Query 008199
Match_columns 574
No_of_seqs 157 out of 177
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 20:31:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008199.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008199hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e8u_A Putative uncharacterize 100.0 1.1E-65 3.8E-70 487.4 13.6 170 112-281 3-172 (172)
2 2v71_A Nuclear distribution pr 95.3 2.2 7.7E-05 41.1 21.0 157 258-429 11-171 (189)
3 1i84_S Smooth muscle myosin he 95.1 0.071 2.4E-06 63.5 10.7 9 19-27 554-562 (1184)
4 1i84_S Smooth muscle myosin he 94.1 0.16 5.6E-06 60.4 10.6 17 172-188 769-785 (1184)
5 3oja_B Anopheles plasmodium-re 93.0 1.6 5.5E-05 47.1 15.3 15 396-410 566-580 (597)
6 3oja_B Anopheles plasmodium-re 92.3 2.1 7.1E-05 46.2 15.1 14 416-429 541-554 (597)
7 2fxo_A Myosin heavy chain, car 91.8 5.8 0.0002 35.5 15.0 75 400-488 46-120 (129)
8 2dfs_A Myosin-5A; myosin-V, in 90.4 5.1 0.00017 47.6 16.9 16 327-342 923-938 (1080)
9 3vkg_A Dynein heavy chain, cyt 88.4 58 0.002 43.2 25.2 24 324-347 1937-1960(3245)
10 3ghg_A Fibrinogen alpha chain; 88.3 3.5 0.00012 45.2 12.2 93 245-337 52-147 (562)
11 2fxo_A Myosin heavy chain, car 88.1 14 0.00048 33.0 16.6 48 317-364 68-115 (129)
12 3vkg_A Dynein heavy chain, cyt 87.4 90 0.0031 41.5 27.7 45 443-487 2055-2102(3245)
13 1wez_A HnRNP H', FTP-3, hetero 86.6 0.38 1.3E-05 40.6 2.9 59 121-191 15-74 (102)
14 2cq3_A RNA-binding protein 9; 86.4 0.94 3.2E-05 37.4 5.2 49 122-181 16-65 (103)
15 2dgw_A Probable RNA-binding pr 85.9 1 3.5E-05 36.3 5.1 58 121-190 10-68 (91)
16 2lxi_A RNA-binding protein 10; 85.0 1.4 4.6E-05 36.2 5.5 51 123-182 3-55 (91)
17 2dnn_A RNA-binding protein 12; 84.9 0.77 2.6E-05 39.6 4.1 59 122-192 17-76 (109)
18 2dfs_A Myosin-5A; myosin-V, in 84.8 19 0.00064 42.9 16.9 26 273-298 923-948 (1080)
19 3na7_A HP0958; flagellar bioge 84.1 34 0.0012 33.6 20.5 31 385-415 94-124 (256)
20 2lmi_A GRSF-1, G-rich sequence 83.1 1.4 4.9E-05 37.0 4.9 59 121-191 11-74 (107)
21 2cqi_A Nucleolysin TIAR; RNA r 82.8 1.6 5.6E-05 35.9 5.1 49 122-181 16-65 (103)
22 2dha_A FLJ20171 protein; RRM d 82.8 1.4 4.7E-05 39.0 4.9 58 121-190 23-86 (123)
23 2err_A Ataxin-2-binding protei 82.4 1.5 5E-05 37.1 4.8 52 122-184 30-82 (109)
24 2e5j_A Methenyltetrahydrofolat 81.9 1.7 5.7E-05 35.7 4.8 48 122-182 20-67 (97)
25 1x4a_A Splicing factor, argini 81.7 1.9 6.4E-05 36.0 5.1 50 122-182 23-72 (109)
26 2cpy_A RNA-binding protein 12; 81.7 1.3 4.6E-05 37.6 4.3 57 123-191 17-76 (114)
27 2hgm_A HNRPF protein, heteroge 81.7 1.4 4.9E-05 39.2 4.6 57 122-190 43-102 (126)
28 3d2w_A TAR DNA-binding protein 79.9 2.5 8.5E-05 34.5 5.2 48 121-182 11-59 (89)
29 2hgn_A Heterogeneous nuclear r 79.7 1.1 3.9E-05 40.4 3.3 49 121-180 46-95 (139)
30 1deq_A Fibrinogen (alpha chain 79.5 36 0.0012 36.1 14.8 92 247-338 57-151 (390)
31 2db1_A Heterogeneous nuclear r 79.4 2 6.7E-05 37.0 4.6 58 122-191 18-80 (118)
32 1wg5_A Heterogeneous nuclear r 79.3 2 6.8E-05 35.9 4.5 57 122-190 16-75 (104)
33 1wi8_A EIF-4B, eukaryotic tran 79.0 1.8 6E-05 35.9 4.0 59 121-191 15-76 (104)
34 2cpe_A RNA-binding protein EWS 79.0 3 0.0001 34.9 5.5 58 121-190 15-83 (113)
35 2ywk_A Putative RNA-binding pr 77.7 3.2 0.00011 33.4 5.2 51 122-183 17-69 (95)
36 3ulh_A THO complex subunit 4; 77.2 3.4 0.00012 34.1 5.3 50 121-181 29-80 (107)
37 4a8x_A RNA-binding protein wit 76.7 2.4 8.3E-05 33.5 4.1 52 121-183 4-59 (88)
38 4f25_A Polyadenylate-binding p 76.7 2.1 7.3E-05 36.4 4.0 49 124-183 8-57 (115)
39 2ek1_A RNA-binding protein 12; 76.7 2.4 8.1E-05 34.2 4.1 50 121-181 15-67 (95)
40 3lqv_A PRE-mRNA branch site pr 76.6 3.2 0.00011 34.8 5.0 49 123-182 10-58 (115)
41 3ghg_A Fibrinogen alpha chain; 76.1 30 0.001 38.1 13.4 81 253-337 81-161 (562)
42 2cph_A RNA binding motif prote 76.1 4.1 0.00014 33.5 5.5 50 122-182 16-69 (107)
43 2dgv_A HnRNP M, heterogeneous 74.2 4.1 0.00014 32.6 4.9 49 122-181 9-58 (92)
44 2dng_A Eukaryotic translation 74.1 2.6 9E-05 34.7 3.8 58 121-190 15-74 (103)
45 1wel_A RNA-binding protein 12; 73.3 3.1 0.00011 35.7 4.2 57 122-190 26-85 (124)
46 2cqp_A RNA-binding protein 12; 72.5 3.5 0.00012 33.5 4.1 50 121-181 15-67 (98)
47 3nmr_A Cugbp ELAV-like family 71.6 4.4 0.00015 35.5 4.9 49 123-182 97-147 (175)
48 2dnz_A Probable RNA-binding pr 71.4 5.9 0.0002 31.8 5.2 49 122-181 6-57 (95)
49 2do4_A Squamous cell carcinoma 71.3 5.3 0.00018 32.6 5.0 50 122-182 18-69 (100)
50 2dnh_A Bruno-like 5, RNA bindi 71.3 5.5 0.00019 32.7 5.1 51 121-182 15-67 (105)
51 2la6_A RNA-binding protein FUS 71.2 5.1 0.00018 32.7 4.9 51 121-182 13-74 (99)
52 1rk8_A CG8781-PA, CG8781-PA pr 71.1 4.1 0.00014 36.8 4.6 57 121-189 72-131 (165)
53 1x5t_A Splicing factor 3B subu 70.7 7.7 0.00026 31.2 5.8 49 122-181 6-58 (96)
54 2kt5_A RNA and export factor-b 70.5 6.3 0.00021 33.6 5.5 49 122-181 36-86 (124)
55 2dgp_A Bruno-like 4, RNA bindi 70.4 5.1 0.00017 33.0 4.7 56 122-189 14-72 (106)
56 1x5s_A Cold-inducible RNA-bind 70.0 5.7 0.00019 32.4 4.9 49 122-181 13-64 (102)
57 2hgl_A HNRPF protein, heteroge 69.8 3.8 0.00013 36.7 4.0 57 122-190 45-106 (136)
58 1s79_A Lupus LA protein; RRM, 69.6 6.9 0.00024 33.0 5.4 57 122-190 12-70 (103)
59 2x1f_A MRNA 3'-END-processing 69.5 7.3 0.00025 31.5 5.4 49 123-182 4-55 (96)
60 2jvr_A Nucleolar protein 3; RN 69.3 6.2 0.00021 34.1 5.2 49 121-180 28-76 (111)
61 3bs9_A Nucleolysin TIA-1 isofo 69.0 6.2 0.00021 31.1 4.8 49 122-181 7-58 (87)
62 1c1g_A Tropomyosin; contractIl 68.9 70 0.0024 29.3 33.3 41 446-486 218-258 (284)
63 2xs2_A Deleted in azoospermia- 68.5 5.5 0.00019 32.6 4.5 58 121-190 9-68 (102)
64 2v71_A Nuclear distribution pr 68.2 87 0.003 30.1 19.5 122 319-457 36-157 (189)
65 1uaw_A Mouse-musashi-1; RNP-ty 68.2 6.4 0.00022 30.2 4.6 56 123-190 2-60 (77)
66 3tnu_A Keratin, type I cytoske 68.1 66 0.0022 28.6 12.5 42 270-311 5-46 (131)
67 2cpf_A RNA binding motif prote 67.6 4.4 0.00015 32.8 3.7 49 122-181 6-60 (98)
68 1iqt_A AUF1, heterogeneous nuc 67.5 5.7 0.00019 30.4 4.1 55 124-190 2-59 (75)
69 2mss_A Protein (musashi1); RNA 67.3 9.8 0.00034 29.1 5.5 55 124-190 2-59 (75)
70 2cqb_A Peptidyl-prolyl CIS-tra 67.0 7.3 0.00025 31.7 4.9 50 122-182 13-65 (102)
71 1x5u_A Splicing factor 3B subu 66.9 8.3 0.00028 31.6 5.3 50 121-181 15-67 (105)
72 2cq4_A RNA binding motif prote 66.8 13 0.00043 31.1 6.5 60 121-192 25-87 (114)
73 2dnm_A SRP46 splicing factor; 66.6 7.6 0.00026 31.8 5.0 51 122-183 14-67 (103)
74 3md1_A Nuclear and cytoplasmic 66.6 7.2 0.00025 30.4 4.6 49 122-181 2-53 (83)
75 1p7a_A BF3, BKLF, kruppel-like 66.3 3.5 0.00012 26.9 2.3 26 36-64 7-32 (37)
76 1oo0_B CG8781-PA, drosophila Y 66.2 8 0.00027 32.0 5.1 50 122-182 27-79 (110)
77 1x4h_A RNA-binding protein 28; 66.0 9.3 0.00032 31.5 5.5 50 122-182 16-68 (111)
78 2fc9_A NCL protein; structure 65.8 5.2 0.00018 32.7 3.8 48 121-181 15-63 (101)
79 2e5h_A Zinc finger CCHC-type a 65.7 6.3 0.00021 31.6 4.2 48 123-181 18-68 (94)
80 2rs2_A Musashi-1, RNA-binding 65.4 7.2 0.00024 32.8 4.7 58 121-190 25-85 (109)
81 2dnl_A Cytoplasmic polyadenyla 65.4 5.7 0.0002 33.5 4.1 48 124-182 11-63 (114)
82 2krb_A Eukaryotic translation 65.1 8.2 0.00028 30.3 4.7 55 123-182 3-58 (81)
83 1p27_B RNA-binding protein 8A; 65.0 7 0.00024 32.1 4.5 50 122-182 24-76 (106)
84 1x4c_A Splicing factor, argini 64.9 7.4 0.00025 32.4 4.7 53 121-190 15-68 (108)
85 2dgs_A DAZ-associated protein 64.9 9 0.00031 31.1 5.1 56 123-190 12-70 (99)
86 2d9p_A Polyadenylate-binding p 64.6 5.1 0.00018 32.8 3.5 49 122-181 16-65 (103)
87 2do0_A HnRNP M, heterogeneous 64.4 8.2 0.00028 32.1 4.8 48 123-181 17-66 (114)
88 3beg_B Splicing factor, argini 64.3 11 0.00039 31.9 5.8 53 121-190 16-69 (115)
89 2m0f_A Zinc finger and BTB dom 64.2 3.5 0.00012 24.8 1.9 22 39-63 1-22 (29)
90 2ku7_A MLL1 PHD3-CYP33 RRM chi 64.2 10 0.00036 32.4 5.6 51 121-182 63-116 (140)
91 2j76_E EIF-4B, EIF4B, eukaryot 63.9 5.2 0.00018 32.9 3.5 58 122-191 20-80 (100)
92 2cqd_A RNA-binding region cont 63.9 10 0.00036 31.7 5.4 48 122-180 18-68 (116)
93 3qne_A Seryl-tRNA synthetase, 63.3 49 0.0017 36.0 11.8 57 436-510 70-135 (485)
94 3ucg_A Polyadenylate-binding p 63.3 10 0.00035 29.9 5.0 57 123-191 8-67 (89)
95 2dgo_A Cytotoxic granule-assoc 63.2 7.7 0.00026 32.4 4.4 49 122-181 16-67 (115)
96 2hvz_A Splicing factor, argini 63.1 9.8 0.00034 31.0 5.0 56 123-193 2-59 (101)
97 2cqc_A Arginine/serine-rich sp 63.1 8.5 0.00029 30.8 4.5 49 122-181 16-67 (95)
98 2jrs_A RNA-binding protein 39; 63.0 7.2 0.00025 32.8 4.2 50 122-182 27-79 (108)
99 1wf0_A TDP-43, TAR DNA-binding 62.9 5.9 0.0002 31.6 3.5 47 123-182 7-53 (88)
100 3brv_B NF-kappa-B essential mo 62.8 38 0.0013 27.8 8.1 53 311-363 5-57 (70)
101 2div_A TRNA selenocysteine ass 62.8 9.5 0.00032 30.9 4.8 49 122-181 10-62 (99)
102 2jwn_A Embryonic polyadenylate 62.6 9.7 0.00033 32.2 5.0 59 121-191 36-97 (124)
103 2elu_A Zinc finger protein 406 62.6 2.8 9.6E-05 29.7 1.3 29 29-65 3-31 (37)
104 2kvh_A Zinc finger and BTB dom 62.2 4.4 0.00015 24.4 2.1 22 39-63 2-23 (27)
105 2ocy_A RAB guanine nucleotide 62.0 1E+02 0.0035 28.7 18.9 74 347-436 73-150 (154)
106 1whw_A Hypothetical protein ri 62.0 13 0.00045 30.0 5.6 50 122-182 9-61 (99)
107 3ex7_B RNA-binding protein 8A; 61.9 10 0.00036 32.1 5.2 50 122-182 23-75 (126)
108 3md3_A Nuclear and cytoplasmic 61.0 10 0.00036 32.6 5.1 49 123-182 2-52 (166)
109 2lkz_A RNA-binding protein 5; 61.0 8.3 0.00028 32.2 4.2 50 123-183 11-65 (95)
110 2ghp_A U4/U6 snRNA-associated 60.9 9.1 0.00031 37.0 5.1 58 122-191 42-100 (292)
111 3sde_A Paraspeckle component 1 60.9 7.5 0.00026 37.5 4.5 52 122-184 97-150 (261)
112 2hzc_A Splicing factor U2AF 65 60.9 9 0.00031 30.1 4.3 49 121-182 6-64 (87)
113 3tnu_B Keratin, type II cytosk 60.9 89 0.003 27.6 13.2 24 405-428 103-126 (129)
114 3s7r_A Heterogeneous nuclear r 60.7 11 0.00039 29.6 4.9 58 121-190 11-71 (87)
115 1m1j_A Fibrinogen alpha subuni 60.2 1.8E+02 0.0062 31.6 15.1 106 221-335 38-146 (491)
116 3p5t_L Cleavage and polyadenyl 60.2 8 0.00027 31.1 3.9 55 123-189 3-62 (90)
117 1fjc_A Nucleolin RBD2, protein 60.1 5 0.00017 32.4 2.7 47 123-182 18-64 (96)
118 2dh8_A DAZ-associated protein 60.0 7.5 0.00026 31.9 3.8 58 122-191 17-77 (105)
119 1why_A Hypothetical protein ri 60.0 12 0.0004 30.4 4.9 54 122-190 18-71 (97)
120 2elt_A Zinc finger protein 406 59.7 5 0.00017 25.8 2.1 24 37-63 6-29 (36)
121 1p1t_A Cleavage stimulation fa 59.6 9.1 0.00031 31.2 4.2 49 123-182 10-61 (104)
122 2dgx_A KIAA0430 protein; RRM d 59.5 9.6 0.00033 31.0 4.3 48 123-182 11-63 (96)
123 1x5o_A RNA binding motif, sing 59.5 20 0.0007 29.7 6.5 50 121-181 25-76 (114)
124 2ki2_A SS-DNA binding protein 58.9 8.1 0.00028 30.7 3.7 49 123-182 3-54 (90)
125 2cqg_A TDP-43, TAR DNA-binding 58.9 11 0.00036 30.9 4.5 56 122-189 16-74 (103)
126 2els_A Zinc finger protein 406 58.7 5.3 0.00018 25.9 2.1 25 37-64 6-30 (36)
127 2elr_A Zinc finger protein 406 58.6 5.7 0.00019 25.5 2.2 26 36-64 5-30 (36)
128 2wbr_A GW182, gawky, LD47780P; 58.3 9 0.00031 32.6 4.0 42 126-181 12-53 (89)
129 3mdf_A Peptidyl-prolyl CIS-tra 57.6 13 0.00044 29.0 4.6 50 122-182 8-60 (85)
130 2cq0_A Eukaryotic translation 57.6 6.2 0.00021 32.3 2.9 50 122-182 16-68 (103)
131 1h2v_Z 20 kDa nuclear CAP bind 57.5 11 0.00037 33.4 4.6 51 121-182 39-92 (156)
132 1x4e_A RNA binding motif, sing 57.4 8.7 0.0003 30.2 3.6 56 123-190 7-65 (85)
133 2m0d_A Zinc finger and BTB dom 57.3 6 0.0002 23.8 2.1 23 39-64 2-24 (30)
134 2dnq_A RNA-binding protein 4B; 57.1 13 0.00043 29.7 4.6 42 123-180 10-51 (90)
135 4fxv_A ELAV-like protein 1; RN 56.9 15 0.00052 30.4 5.2 48 123-181 21-71 (99)
136 2fy1_A RNA-binding motif prote 56.5 16 0.00055 31.0 5.4 49 122-181 8-58 (116)
137 2elp_A Zinc finger protein 406 56.4 6.1 0.00021 25.7 2.1 25 36-63 5-30 (37)
138 2cpd_A Apobec-1 stimulating pr 56.2 15 0.0005 29.9 4.9 46 122-181 16-61 (99)
139 3tyt_A Heterogeneous nuclear r 56.1 16 0.00056 34.3 5.9 62 123-196 125-189 (205)
140 2khc_A Testis-specific RNP-typ 56.1 10 0.00035 31.8 4.0 51 122-183 41-94 (118)
141 2cpz_A CUG triplet repeat RNA- 56.1 13 0.00043 31.1 4.6 49 122-181 26-77 (115)
142 2elx_A Zinc finger protein 406 56.0 6.4 0.00022 25.0 2.2 25 37-64 4-28 (35)
143 2ghp_A U4/U6 snRNA-associated 56.0 13 0.00043 36.0 5.2 52 121-181 117-169 (292)
144 1x4g_A Nucleolysin TIAR; struc 55.9 12 0.00042 31.0 4.4 46 122-182 26-72 (109)
145 3nmr_A Cugbp ELAV-like family 55.9 12 0.00041 32.6 4.6 49 123-182 5-58 (175)
146 2fc8_A NCL protein; structure 55.9 7.6 0.00026 31.6 3.1 46 122-180 16-63 (102)
147 2i2y_A Fusion protein consists 55.8 14 0.00046 32.5 4.9 47 122-182 74-121 (150)
148 2cjk_A Nuclear polyadenylated 55.5 19 0.00064 31.3 5.8 57 121-189 87-146 (167)
149 1x4b_A Heterogeneous nuclear r 55.5 13 0.00043 31.2 4.5 57 122-190 28-87 (116)
150 1whx_A Hypothetical protein ri 55.3 15 0.00051 31.0 4.9 48 122-183 11-58 (111)
151 2kn4_A Immunoglobulin G-bindin 55.2 14 0.00049 32.4 5.0 50 121-181 70-122 (158)
152 2ytc_A PRE-mRNA-splicing facto 54.7 15 0.00051 28.7 4.5 43 123-180 14-57 (85)
153 2dis_A Unnamed protein product 54.6 18 0.00062 29.7 5.3 48 123-181 10-62 (109)
154 2kvf_A Zinc finger and BTB dom 54.5 7 0.00024 23.5 2.1 23 39-64 2-24 (28)
155 2g4b_A Splicing factor U2AF 65 54.4 18 0.0006 31.6 5.5 52 121-183 94-148 (172)
156 3ghg_C Fibrinogen gamma chain; 54.4 1.3E+02 0.0046 32.0 13.0 98 231-342 25-136 (411)
157 2f3j_A RNA and export factor b 54.3 17 0.00057 33.6 5.5 50 122-182 89-140 (177)
158 1srk_A Zinc finger protein ZFP 54.1 7.1 0.00024 24.9 2.2 25 37-64 4-28 (35)
159 2elq_A Zinc finger protein 406 54.0 7 0.00024 25.2 2.1 25 37-64 6-30 (36)
160 1qm9_A Polypyrimidine tract-bi 54.0 14 0.00049 33.3 4.9 48 122-181 121-168 (198)
161 2la4_A Nuclear and cytoplasmic 53.7 15 0.00053 29.8 4.6 47 122-182 28-74 (101)
162 2en2_A B-cell lymphoma 6 prote 53.6 7.3 0.00025 26.1 2.2 26 35-63 6-31 (42)
163 1ard_A Yeast transcription fac 53.5 7.3 0.00025 23.4 2.0 21 40-63 2-22 (29)
164 1m1j_C Fibrinogen gamma chain; 53.1 1E+02 0.0036 32.8 12.0 49 248-296 36-95 (409)
165 1nu4_A U1A RNA binding domain; 53.0 5.5 0.00019 32.1 1.7 48 123-181 10-61 (97)
166 2dit_A HIV TAT specific factor 52.8 8.7 0.0003 32.4 3.0 59 122-183 16-76 (112)
167 2yh0_A Splicing factor U2AF 65 52.8 16 0.00056 32.6 5.1 52 121-183 114-168 (198)
168 4f02_A Polyadenylate-binding p 52.7 11 0.00039 35.0 4.1 49 123-182 105-154 (213)
169 2nlw_A Eukaryotic translation 52.3 16 0.00055 30.2 4.6 57 122-183 16-73 (105)
170 3s8s_A Histone-lysine N-methyl 52.1 17 0.00059 30.8 4.8 50 122-182 7-59 (110)
171 1wf1_A RNA-binding protein RAL 52.0 12 0.00041 31.1 3.8 46 122-183 28-74 (110)
172 3bas_A Myosin heavy chain, str 51.9 1E+02 0.0036 25.7 11.5 27 320-346 58-84 (89)
173 2kvg_A Zinc finger and BTB dom 51.6 5.7 0.0002 24.1 1.3 22 39-63 2-23 (27)
174 2dhg_A TRNA selenocysteine ass 51.4 22 0.00075 28.9 5.2 51 122-182 10-62 (104)
175 2voo_A Lupus LA protein; RNA-b 51.3 15 0.00051 34.3 4.7 50 122-182 110-161 (193)
176 1l3k_A Heterogeneous nuclear r 51.2 17 0.00058 32.5 4.9 49 122-181 105-156 (196)
177 2eos_A B-cell lymphoma 6 prote 51.1 8.8 0.0003 25.7 2.3 27 35-64 6-32 (42)
178 2elv_A Zinc finger protein 406 51.1 8.7 0.0003 24.7 2.2 25 37-64 6-30 (36)
179 2m0e_A Zinc finger and BTB dom 51.0 7.5 0.00026 23.1 1.8 21 40-63 2-22 (29)
180 1rik_A E6APC1 peptide; E6-bind 50.4 8.1 0.00028 23.2 1.9 21 40-63 2-22 (29)
181 2e44_A Insulin-like growth fac 50.4 21 0.0007 28.6 4.8 49 121-182 15-65 (96)
182 3md3_A Nuclear and cytoplasmic 50.1 18 0.00061 31.1 4.7 49 122-181 88-139 (166)
183 1fje_B Nucleolin RBD12, protei 50.1 13 0.00043 32.8 3.8 48 121-181 99-146 (175)
184 1b7f_A Protein (SXL-lethal pro 49.9 16 0.00054 31.7 4.4 56 123-190 5-63 (168)
185 3v4m_A Splicing factor U2AF 65 49.7 9.2 0.00031 32.4 2.7 61 122-184 6-72 (105)
186 2m2b_A RNA-binding protein 10; 49.2 13 0.00045 32.1 3.7 51 123-185 25-80 (131)
187 1klr_A Zinc finger Y-chromosom 49.0 9.1 0.00031 22.9 2.0 22 40-64 2-23 (30)
188 2elo_A Zinc finger protein 406 49.0 6.8 0.00023 25.4 1.4 26 36-64 5-30 (37)
189 2lea_A Serine/arginine-rich sp 48.9 15 0.00052 32.2 4.1 50 121-181 47-99 (135)
190 2epc_A Zinc finger protein 32; 48.9 9.5 0.00032 25.4 2.2 28 34-64 5-32 (42)
191 2cpx_A Hypothetical protein FL 48.6 11 0.00037 31.4 3.0 49 122-181 26-77 (115)
192 2dq0_A Seryl-tRNA synthetase; 48.5 1.5E+02 0.005 31.8 12.4 54 437-508 69-131 (455)
193 2ept_A Zinc finger protein 32; 48.3 9.9 0.00034 25.3 2.2 27 36-65 6-32 (41)
194 2cqh_A IGF-II mRNA-binding pro 48.3 15 0.0005 29.4 3.6 45 123-182 10-55 (93)
195 2jvo_A Nucleolar protein 3; nu 48.3 16 0.00056 30.6 4.0 44 122-181 32-75 (108)
196 3nmd_A CGMP dependent protein 48.2 44 0.0015 27.6 6.3 26 402-430 40-65 (72)
197 1paa_A Yeast transcription fac 48.1 9.5 0.00033 23.1 1.9 20 40-62 2-21 (30)
198 3u59_A Tropomyosin beta chain; 47.7 1.3E+02 0.0044 25.5 9.9 64 394-461 15-82 (101)
199 3na7_A HP0958; flagellar bioge 47.6 2.1E+02 0.0071 27.9 23.3 16 349-364 86-101 (256)
200 2dgt_A RNA-binding protein 30; 47.6 26 0.0009 27.9 5.0 43 122-180 11-53 (92)
201 2elm_A Zinc finger protein 406 47.5 9.2 0.00032 25.1 1.9 23 37-62 6-28 (37)
202 2cpj_A Non-POU domain-containi 47.3 16 0.00056 29.6 3.8 48 122-183 16-63 (99)
203 2eou_A Zinc finger protein 473 47.1 11 0.00036 25.7 2.2 28 33-63 5-32 (44)
204 1njq_A Superman protein; zinc- 46.9 10 0.00036 25.0 2.1 25 37-64 3-27 (39)
205 2ytb_A Zinc finger protein 32; 46.7 11 0.00037 25.1 2.2 26 36-64 7-32 (42)
206 2em9_A Zinc finger protein 224 46.6 11 0.00038 25.7 2.3 28 34-64 6-33 (46)
207 3ns6_A Eukaryotic translation 46.5 12 0.00041 30.8 2.8 55 123-182 8-65 (100)
208 4dnd_A Syntaxin-10, SYN10; str 45.8 87 0.003 28.1 8.6 72 418-493 37-118 (130)
209 2kxn_B Transformer-2 protein h 45.8 18 0.00061 31.5 4.0 48 123-181 48-98 (129)
210 1fxl_A Paraneoplastic encephal 45.6 23 0.00078 30.4 4.7 48 123-181 4-54 (167)
211 1fj7_A Nucleolin RBD1, protein 45.5 11 0.00037 30.7 2.4 58 121-190 17-76 (101)
212 2yu5_A Zinc finger protein 473 45.4 11 0.00036 25.6 2.0 28 35-65 7-34 (44)
213 2emi_A Zinc finger protein 484 45.3 11 0.00038 25.7 2.1 27 35-64 7-33 (46)
214 2el5_A Zinc finger protein 268 45.3 11 0.00038 25.1 2.1 26 36-64 6-31 (42)
215 2emb_A Zinc finger protein 473 45.2 11 0.00039 25.4 2.2 28 34-64 6-33 (44)
216 2enf_A Zinc finger protein 347 45.1 12 0.0004 25.6 2.2 28 34-64 6-33 (46)
217 3egn_A RNA-binding protein 40; 45.0 20 0.00068 31.2 4.2 56 123-190 47-110 (143)
218 2yts_A Zinc finger protein 484 44.9 12 0.0004 25.5 2.2 28 34-64 6-33 (46)
219 2en9_A Zinc finger protein 28 44.7 12 0.00041 25.6 2.2 28 34-64 6-33 (46)
220 2elz_A Zinc finger protein 224 44.6 13 0.00044 25.5 2.4 29 33-64 5-33 (46)
221 3u1c_A Tropomyosin alpha-1 cha 44.5 1.5E+02 0.0051 25.3 9.9 72 395-470 16-91 (101)
222 2eq1_A Zinc finger protein 347 44.5 12 0.00041 25.6 2.2 27 35-64 7-33 (46)
223 2dnp_A RNA-binding protein 14; 44.4 22 0.00074 28.3 4.0 44 122-181 10-53 (90)
224 2ysp_A Zinc finger protein 224 44.3 9.4 0.00032 26.1 1.6 30 33-65 5-34 (46)
225 2yte_A Zinc finger protein 473 44.3 13 0.00043 24.7 2.2 26 36-64 6-31 (42)
226 2eof_A Zinc finger protein 268 44.2 12 0.0004 25.2 2.0 26 36-64 8-33 (44)
227 1u6f_A Tcubp1, RNA-binding pro 44.0 17 0.00059 31.3 3.6 49 123-182 44-95 (139)
228 2emg_A Zinc finger protein 484 43.9 14 0.00047 25.2 2.4 28 34-64 6-33 (46)
229 2drp_A Protein (tramtrack DNA- 43.8 15 0.0005 27.1 2.7 27 35-64 5-31 (66)
230 2eow_A Zinc finger protein 347 43.8 12 0.00043 25.4 2.2 27 35-64 7-33 (46)
231 2epv_A Zinc finger protein 268 43.7 14 0.00047 25.2 2.4 28 34-64 6-33 (44)
232 3n9u_C Cleavage and polyadenyl 43.7 26 0.00089 31.6 4.9 49 122-181 56-109 (156)
233 2en7_A Zinc finger protein 268 43.7 12 0.00041 25.1 2.1 26 36-64 8-33 (44)
234 2enh_A Zinc finger protein 28 43.6 14 0.00047 25.3 2.4 28 34-64 6-33 (46)
235 1b7f_A Protein (SXL-lethal pro 43.6 24 0.0008 30.6 4.5 50 121-181 89-141 (168)
236 2ytf_A Zinc finger protein 268 43.5 13 0.00043 25.4 2.2 26 36-64 8-33 (46)
237 1znf_A 31ST zinc finger from X 43.2 13 0.00043 22.0 1.9 22 40-64 1-22 (27)
238 2adc_A Polypyrimidine tract-bi 43.2 25 0.00085 33.0 4.9 48 122-181 152-199 (229)
239 2ep3_A Zinc finger protein 484 43.1 12 0.00042 25.5 2.1 26 36-64 8-33 (46)
240 1l3k_A Heterogeneous nuclear r 42.8 23 0.0008 31.5 4.4 57 122-190 14-73 (196)
241 2ytp_A Zinc finger protein 484 42.8 13 0.00046 25.4 2.2 28 34-64 6-33 (46)
242 2eon_A ZFP-95, zinc finger pro 42.6 13 0.00045 25.5 2.2 27 35-64 7-33 (46)
243 2em3_A Zinc finger protein 28 42.3 13 0.00044 25.4 2.1 28 34-64 6-33 (46)
244 2ely_A Zinc finger protein 224 42.3 14 0.00049 25.2 2.3 28 33-63 5-32 (46)
245 3pgw_S U1-70K; protein-RNA com 42.2 68 0.0023 33.9 8.5 56 122-189 103-161 (437)
246 2eov_A Zinc finger protein 484 42.1 15 0.00051 25.0 2.4 27 35-64 7-33 (46)
247 2epw_A Zinc finger protein 268 42.1 13 0.00046 25.2 2.1 27 35-64 7-33 (46)
248 2eme_A Zinc finger protein 473 42.1 14 0.00047 25.2 2.2 26 36-64 8-33 (46)
249 2em8_A Zinc finger protein 224 42.0 15 0.00051 25.1 2.4 27 34-63 6-32 (46)
250 2yth_A Zinc finger protein 224 41.9 15 0.0005 25.2 2.3 27 35-64 7-33 (46)
251 2eom_A ZFP-95, zinc finger pro 41.9 14 0.00049 25.3 2.3 28 34-64 6-33 (46)
252 2dgu_A Heterogeneous nuclear r 41.8 22 0.00077 29.0 3.8 44 123-182 13-56 (103)
253 2ytj_A Zinc finger protein 484 41.8 13 0.00046 25.3 2.1 26 36-64 8-33 (46)
254 2yrj_A Zinc finger protein 473 41.8 14 0.00048 25.1 2.2 28 34-64 6-33 (46)
255 2e5g_A U6 snRNA-specific termi 41.6 35 0.0012 27.3 4.9 54 123-190 10-63 (94)
256 2epx_A Zinc finger protein 28 41.6 15 0.00052 25.0 2.4 28 34-64 6-33 (47)
257 3o0z_A RHO-associated protein 41.5 2.3E+02 0.008 26.7 18.3 16 396-411 119-134 (168)
258 2eop_A Zinc finger protein 268 41.5 14 0.0005 25.0 2.2 27 35-64 7-33 (46)
259 2em2_A Zinc finger protein 28 41.4 15 0.0005 25.2 2.3 27 34-63 6-32 (46)
260 2eoz_A Zinc finger protein 473 41.3 11 0.00039 25.8 1.6 27 34-63 6-32 (46)
261 2en3_A ZFP-95, zinc finger pro 41.2 14 0.00048 25.2 2.1 25 36-63 8-32 (46)
262 1x6e_A Zinc finger protein 24; 41.1 11 0.00038 28.5 1.7 27 34-63 8-34 (72)
263 1wex_A Hypothetical protein (r 41.1 29 0.001 29.2 4.5 53 122-189 16-68 (104)
264 2yto_A Zinc finger protein 484 41.0 15 0.00051 25.2 2.2 27 35-64 7-33 (46)
265 2yti_A Zinc finger protein 347 41.0 13 0.00043 25.5 1.8 27 35-64 7-33 (46)
266 3uk3_C Zinc finger protein 217 40.9 13 0.00043 26.5 1.9 23 38-63 2-24 (57)
267 2em6_A Zinc finger protein 224 40.8 15 0.00053 25.1 2.3 28 34-64 6-33 (46)
268 2xdj_A Uncharacterized protein 40.6 76 0.0026 26.6 6.8 44 404-461 22-65 (83)
269 3viq_B Mating-type switching p 40.5 1E+02 0.0035 26.1 7.6 47 396-450 2-48 (85)
270 2eoh_A Zinc finger protein 28 40.5 15 0.00051 25.1 2.2 27 35-64 7-33 (46)
271 2eoy_A Zinc finger protein 473 40.5 15 0.0005 25.2 2.1 28 34-64 6-33 (46)
272 2cjk_A Nuclear polyadenylated 40.3 29 0.001 30.0 4.6 50 123-183 5-57 (167)
273 2eq2_A Zinc finger protein 347 40.1 14 0.00047 25.2 1.9 26 36-64 8-33 (46)
274 2em7_A Zinc finger protein 224 40.1 15 0.0005 25.1 2.1 27 35-64 7-33 (46)
275 2em4_A Zinc finger protein 28 40.0 17 0.00057 24.9 2.4 28 34-64 6-33 (46)
276 2xnq_A Nuclear polyadenylated 39.9 34 0.0011 27.9 4.6 45 123-182 24-68 (97)
277 2ep1_A Zinc finger protein 484 39.7 15 0.00052 24.9 2.1 27 35-64 7-33 (46)
278 2ytn_A Zinc finger protein 347 39.7 16 0.00053 25.0 2.2 28 34-64 6-33 (46)
279 2epz_A Zinc finger protein 28 39.7 17 0.00058 24.8 2.4 28 34-64 6-33 (46)
280 2qfj_A FBP-interacting repress 39.4 35 0.0012 30.9 5.1 57 122-190 29-88 (216)
281 2eoq_A Zinc finger protein 224 39.4 16 0.00053 25.0 2.1 26 36-64 8-33 (46)
282 2k48_A Nucleoprotein; viral pr 39.3 2E+02 0.0068 25.3 9.6 61 343-416 43-103 (107)
283 1fxl_A Paraneoplastic encephal 39.3 37 0.0012 29.1 5.0 49 122-181 89-140 (167)
284 2yrm_A B-cell lymphoma 6 prote 39.3 17 0.00058 24.6 2.3 25 36-63 6-30 (43)
285 2ep2_A Zinc finger protein 484 39.3 15 0.00053 25.0 2.1 27 35-64 7-33 (46)
286 2enc_A Zinc finger protein 224 39.2 16 0.00055 24.9 2.2 27 35-64 7-33 (46)
287 2eor_A Zinc finger protein 224 39.2 15 0.00053 24.9 2.1 26 35-63 7-32 (46)
288 2eoj_A Zinc finger protein 268 39.2 11 0.00038 25.4 1.3 27 36-65 8-34 (44)
289 2yso_A ZFP-95, zinc finger pro 39.2 17 0.00057 24.8 2.2 28 34-64 6-33 (46)
290 2em5_A ZFP-95, zinc finger pro 39.1 16 0.00054 25.0 2.1 28 34-64 6-33 (46)
291 2emh_A Zinc finger protein 484 39.0 16 0.00053 25.0 2.1 25 36-63 8-32 (46)
292 2emz_A ZFP-95, zinc finger pro 38.9 16 0.00056 24.9 2.2 25 36-63 8-32 (46)
293 2emj_A Zinc finger protein 28 38.9 18 0.0006 24.8 2.3 27 34-63 6-32 (46)
294 2yu8_A Zinc finger protein 347 38.8 16 0.00056 24.8 2.2 27 34-63 6-32 (46)
295 2epu_A Zinc finger protein 32; 38.7 12 0.00042 25.4 1.5 26 36-64 8-33 (45)
296 2el4_A Zinc finger protein 268 38.7 16 0.00056 24.8 2.1 26 36-64 8-33 (46)
297 2ene_A Zinc finger protein 347 38.5 17 0.00057 24.8 2.1 26 36-64 8-33 (46)
298 1cii_A Colicin IA; bacteriocin 38.4 2.3E+02 0.0077 31.0 11.6 88 320-432 348-435 (602)
299 2eq3_A Zinc finger protein 347 38.3 12 0.0004 25.6 1.3 26 36-64 8-33 (46)
300 2eoo_A ZFP-95, zinc finger pro 38.3 17 0.00057 24.9 2.1 25 36-63 8-32 (46)
301 2eq0_A Zinc finger protein 347 38.2 17 0.00059 24.7 2.2 26 36-64 8-33 (46)
302 1rim_A E6APC2 peptide; E6-bind 38.2 17 0.00058 23.2 2.1 22 40-64 2-23 (33)
303 2emy_A Zinc finger protein 268 38.2 19 0.00064 24.5 2.4 28 34-64 6-33 (46)
304 2cpi_A CCR4-NOT transcription 38.2 25 0.00085 29.3 3.6 50 122-182 16-74 (111)
305 3pgw_A U1-A; protein-RNA compl 38.2 32 0.0011 32.9 4.8 49 122-183 208-256 (282)
306 2ytm_A Zinc finger protein 28 38.2 16 0.00053 25.1 2.0 28 33-63 5-32 (46)
307 2emx_A Zinc finger protein 268 38.1 17 0.00057 24.5 2.1 26 36-64 6-31 (44)
308 2ytk_A Zinc finger protein 347 38.0 16 0.00056 24.9 2.0 27 35-64 7-33 (46)
309 4gzn_C ZFP-57, zinc finger pro 38.0 16 0.00056 27.9 2.2 24 37-63 1-24 (60)
310 2eml_A Zinc finger protein 28 37.9 17 0.00057 24.8 2.1 27 35-64 7-33 (46)
311 3iuf_A Zinc finger protein UBI 37.8 16 0.00053 25.8 1.9 25 37-64 4-28 (48)
312 2eox_A Zinc finger protein 473 37.6 13 0.00043 25.2 1.4 28 34-64 6-33 (44)
313 2en8_A Zinc finger protein 224 37.4 18 0.00061 24.5 2.2 28 34-64 6-33 (46)
314 2emf_A Zinc finger protein 484 37.4 17 0.00057 24.9 2.0 29 34-65 6-34 (46)
315 2drp_A Protein (tramtrack DNA- 37.4 16 0.00056 26.8 2.1 24 37-63 37-60 (66)
316 2ytq_A Zinc finger protein 268 37.1 18 0.00062 24.7 2.2 29 34-65 6-34 (46)
317 2lw1_A ABC transporter ATP-bin 36.9 1.3E+02 0.0043 25.0 7.7 63 394-466 21-85 (89)
318 2bz2_A Negative elongation fac 36.9 41 0.0014 28.9 4.9 34 143-181 50-83 (121)
319 2lvr_A Zinc finger and BTB dom 43.1 7.3 0.00025 23.6 0.0 22 39-63 2-23 (30)
320 2lvu_A Zinc finger and BTB dom 42.9 7.3 0.00025 23.1 0.0 21 40-63 2-22 (26)
321 2eqb_B RAB guanine nucleotide 36.6 2.1E+02 0.0071 24.8 11.9 82 328-415 15-96 (97)
322 2emm_A ZFP-95, zinc finger pro 36.6 18 0.00062 24.5 2.1 26 35-63 7-32 (46)
323 1bbo_A Human enhancer-binding 36.6 18 0.0006 25.7 2.1 26 37-65 26-51 (57)
324 2ep0_A Zinc finger protein 28 36.4 19 0.00065 24.5 2.2 26 36-64 8-33 (46)
325 1sjq_A Polypyrimidine tract-bi 36.4 33 0.0011 29.5 4.1 46 121-181 16-62 (105)
326 2adr_A ADR1; transcription reg 36.2 18 0.00061 26.0 2.1 24 37-63 27-50 (60)
327 2em0_A Zinc finger protein 224 36.2 20 0.00069 24.4 2.3 28 34-64 6-33 (46)
328 2ytg_A ZFP-95, zinc finger pro 35.9 17 0.0006 24.7 1.9 27 35-64 7-33 (46)
329 2ytr_A Zinc finger protein 347 35.7 19 0.00064 24.4 2.1 28 34-64 6-33 (46)
330 1wg1_A KIAA1579 protein, homol 35.7 22 0.00075 28.3 2.8 52 123-190 7-58 (88)
331 2ytt_A Zinc finger protein 473 35.6 17 0.00059 24.8 1.8 25 36-63 8-32 (46)
332 2qfj_A FBP-interacting repress 35.4 42 0.0014 30.3 5.0 48 122-180 126-176 (216)
333 2emk_A Zinc finger protein 28 35.3 21 0.00073 24.3 2.3 26 35-63 7-32 (46)
334 3q2s_C Cleavage and polyadenyl 35.3 38 0.0013 32.5 4.8 57 122-190 69-130 (229)
335 2el6_A Zinc finger protein 268 35.2 20 0.00068 24.5 2.1 27 35-64 7-33 (46)
336 2eq4_A Zinc finger protein 224 35.2 19 0.00066 24.4 2.0 28 34-64 6-33 (46)
337 1yui_A GAGA-factor; complex (D 34.8 20 0.00068 25.6 2.2 25 36-63 20-44 (54)
338 1x6e_A Zinc finger protein 24; 34.7 19 0.00066 27.1 2.2 25 36-63 38-62 (72)
339 2lvt_A Zinc finger and BTB dom 40.9 8.2 0.00028 23.4 0.0 21 40-63 2-22 (29)
340 3smz_A Protein raver-1, ribonu 34.6 33 0.0011 32.9 4.3 51 121-182 184-237 (284)
341 2emp_A Zinc finger protein 347 34.6 20 0.00069 24.4 2.1 26 35-63 7-32 (46)
342 3mq7_A Bone marrow stromal ant 34.6 1.5E+02 0.005 26.6 7.9 28 444-471 78-105 (121)
343 3s6e_A RNA-binding protein 39; 34.5 33 0.0011 29.7 3.9 87 123-226 9-96 (114)
344 3a7p_A Autophagy protein 16; c 34.0 2.9E+02 0.01 25.7 10.7 63 388-471 68-130 (152)
345 2ema_A Zinc finger protein 347 33.9 22 0.00075 24.2 2.2 26 36-64 8-33 (46)
346 1d0q_A DNA primase; zinc-bindi 33.6 28 0.00096 29.6 3.2 31 32-66 50-80 (103)
347 2kvi_A Nuclear polyadenylated 33.4 43 0.0015 27.0 4.2 43 123-180 12-54 (96)
348 2en6_A Zinc finger protein 268 33.4 18 0.00063 24.6 1.7 28 34-64 6-33 (46)
349 2cq1_A PTB-like protein L; RRM 33.3 32 0.0011 28.9 3.5 45 122-181 16-61 (101)
350 3l4q_C Phosphatidylinositol 3- 33.2 3.1E+02 0.011 25.8 14.4 30 255-284 15-44 (170)
351 2ytd_A Zinc finger protein 473 32.8 23 0.0008 24.0 2.2 27 35-64 7-33 (46)
352 1f2i_G Fusion of N-terminal 17 32.7 22 0.00076 26.6 2.2 10 38-47 47-56 (73)
353 2wvr_A Geminin; DNA replicatio 32.1 98 0.0034 30.2 7.0 36 396-434 116-151 (209)
354 2eoe_A Zinc finger protein 347 32.0 17 0.00058 24.7 1.3 28 34-64 6-33 (46)
355 1wii_A Hypothetical UPF0222 pr 31.9 13 0.00044 31.5 0.8 14 36-49 19-32 (85)
356 4dci_A Uncharacterized protein 31.9 1.3E+02 0.0044 27.9 7.5 94 324-432 28-121 (150)
357 3nmd_A CGMP dependent protein 31.5 1.1E+02 0.0039 25.1 6.3 46 445-490 20-65 (72)
358 3hnw_A Uncharacterized protein 31.1 3E+02 0.01 24.9 14.4 22 391-412 113-134 (138)
359 2lcw_A RNA-binding protein FUS 37.1 10 0.00035 31.8 0.0 56 123-190 9-75 (116)
360 6rxn_A Rubredoxin; electron tr 30.5 15 0.00052 27.7 0.8 13 39-51 29-41 (46)
361 3lay_A Zinc resistance-associa 30.4 2.8E+02 0.0095 26.1 9.8 20 343-362 121-140 (175)
362 2en1_A Zinc finger protein 224 30.3 20 0.0007 24.3 1.5 27 35-64 7-33 (46)
363 4f9d_A Poly-beta-1,6-N-acetyl- 30.0 17 0.00057 40.7 1.5 67 145-221 300-366 (618)
364 2eln_A Zinc finger protein 406 29.8 28 0.00097 24.2 2.2 25 36-63 5-31 (38)
365 2eps_A POZ-, at HOOK-, and zin 29.7 28 0.00094 24.9 2.2 24 37-63 9-32 (54)
366 3pgw_A U1-A; protein-RNA compl 29.5 57 0.002 31.1 5.0 49 123-182 11-63 (282)
367 2e7s_A RAB guanine nucleotide 29.4 3.3E+02 0.011 24.8 10.0 43 389-434 90-132 (135)
368 1fv5_A First zinc finger of U- 29.3 20 0.0007 24.9 1.3 24 37-63 5-28 (36)
369 2ct1_A Transcriptional repress 29.2 26 0.00088 26.7 2.0 28 33-63 8-35 (77)
370 3pq1_A Poly(A) RNA polymerase; 29.1 38 0.0013 36.7 4.0 37 142-182 64-100 (464)
371 3haj_A Human pacsin2 F-BAR; pa 28.7 5.4E+02 0.019 27.2 20.3 185 282-495 36-236 (486)
372 1x5w_A Zinc finger protein 64, 28.6 28 0.00095 25.9 2.1 25 37-64 6-30 (70)
373 2j8a_A Histone-lysine N-methyl 28.6 1.1E+02 0.0037 28.0 6.3 38 141-180 17-57 (136)
374 2a3j_A U1 small nuclear ribonu 28.6 62 0.0021 28.3 4.7 48 123-181 31-82 (127)
375 2ad9_A Polypyrimidine tract-bi 28.6 51 0.0017 28.8 4.1 46 122-182 32-78 (119)
376 3mjh_B Early endosome antigen 28.6 28 0.00097 24.7 1.9 20 40-62 5-24 (34)
377 1e8j_A Rubredoxin; iron-sulfur 28.4 19 0.00066 27.6 1.1 16 38-53 34-49 (52)
378 3r27_A HnRNP L, heterogeneous 28.2 65 0.0022 27.4 4.6 45 123-182 23-68 (100)
379 2lce_A B-cell lymphoma 6 prote 28.2 30 0.001 26.1 2.3 25 36-63 13-37 (74)
380 1zfd_A SWI5; DNA binding motif 28.0 36 0.0012 20.9 2.3 23 39-64 2-26 (32)
381 2epq_A POZ-, at HOOK-, and zin 27.9 19 0.00065 24.4 1.0 27 35-64 5-31 (45)
382 2v3b_B Rubredoxin 2, rubredoxi 27.5 18 0.00062 28.1 0.8 16 38-53 34-49 (55)
383 2go8_A Hypothetical protein YQ 27.4 54 0.0019 29.1 4.1 100 121-225 11-115 (122)
384 1yk4_A Rubredoxin, RD; electro 27.2 18 0.00063 27.7 0.8 16 38-53 33-48 (52)
385 2dmd_A Zinc finger protein 64, 27.2 28 0.00096 27.3 2.0 25 37-64 5-29 (96)
386 2epr_A POZ-, at HOOK-, and zin 27.1 25 0.00085 24.3 1.5 26 37-65 9-34 (48)
387 3hnw_A Uncharacterized protein 27.1 3.1E+02 0.011 24.7 9.2 10 329-338 36-45 (138)
388 4rxn_A Rubredoxin; electron tr 26.8 19 0.00065 28.0 0.8 16 38-53 34-49 (54)
389 3lss_A Seryl-tRNA synthetase; 26.6 3E+02 0.01 29.9 10.4 30 480-509 129-168 (484)
390 2d9h_A Zinc finger protein 692 26.5 33 0.0011 26.0 2.2 23 37-62 4-26 (78)
391 4gzn_C ZFP-57, zinc finger pro 26.4 30 0.001 26.4 1.9 26 36-64 28-53 (60)
392 2kn9_A Rubredoxin; metalloprot 26.3 19 0.00066 30.2 0.8 15 39-53 59-73 (81)
393 2lv2_A Insulinoma-associated p 26.2 30 0.001 28.3 2.1 25 36-63 52-76 (85)
394 2kw0_A CCMH protein; oxidoredu 26.2 17 0.00059 31.1 0.6 13 39-51 22-34 (90)
395 2hl7_A Cytochrome C-type bioge 26.1 19 0.00063 30.4 0.7 13 39-51 25-37 (84)
396 2kmk_A Zinc finger protein GFI 25.8 34 0.0011 25.8 2.1 9 39-47 56-64 (82)
397 2e72_A POGO transposable eleme 25.7 37 0.0013 26.0 2.3 22 38-63 10-32 (49)
398 3oja_A Leucine-rich immune mol 25.7 5.8E+02 0.02 26.5 17.2 22 299-320 324-345 (487)
399 3mq9_A Bone marrow stromal ant 25.6 2.5E+02 0.0087 29.1 9.5 90 380-470 376-469 (471)
400 2d9o_A DNAJ (HSP40) homolog, s 25.2 57 0.002 27.4 3.7 38 141-182 28-65 (100)
401 1a1h_A QGSR zinc finger peptid 25.2 35 0.0012 26.2 2.2 23 38-63 60-82 (90)
402 2yrc_A Protein transport prote 25.0 29 0.00098 27.3 1.6 16 33-48 26-41 (59)
403 2g4b_A Splicing factor U2AF 65 24.9 61 0.0021 28.1 3.9 57 123-190 6-69 (172)
404 2cot_A Zinc finger protein 435 24.8 35 0.0012 25.8 2.1 23 38-63 44-66 (77)
405 1sjr_A Polypyrimidine tract-bi 24.8 63 0.0022 30.1 4.2 48 124-183 49-96 (164)
406 3smz_A Protein raver-1, ribonu 24.8 47 0.0016 31.8 3.4 45 123-182 24-68 (284)
407 1t6f_A Geminin; coiled-coil, c 24.7 1.3E+02 0.0045 21.7 4.7 22 318-339 4-25 (37)
408 1va1_A Transcription factor SP 24.7 41 0.0014 21.8 2.2 24 37-63 5-30 (37)
409 2yt9_A Zinc finger-containing 24.6 37 0.0012 26.5 2.2 25 37-64 4-28 (95)
410 3a43_A HYPD, hydrogenase nicke 24.2 57 0.002 29.4 3.7 30 18-47 42-77 (139)
411 2ic6_A Nucleocapsid protein; h 24.1 3.1E+02 0.011 22.8 8.6 60 344-416 14-73 (78)
412 2pe8_A Splicing factor 45; RRM 23.9 99 0.0034 25.9 4.9 85 123-227 10-98 (105)
413 1jmt_A Splicing factor U2AF 35 23.8 73 0.0025 26.6 4.1 36 147-184 43-81 (104)
414 4f02_A Polyadenylate-binding p 23.5 86 0.003 28.9 4.9 49 123-182 17-68 (213)
415 1dx8_A Rubredoxin; electron tr 23.5 24 0.0008 28.8 0.8 18 38-55 38-55 (70)
416 2lv2_A Insulinoma-associated p 23.3 36 0.0012 27.8 2.0 31 32-65 20-50 (85)
417 1sp2_A SP1F2; zinc finger, tra 23.2 46 0.0016 20.3 2.1 22 40-64 2-25 (31)
418 2ic9_A Nucleocapsid protein; h 23.2 2.8E+02 0.0097 23.9 7.5 57 347-416 17-73 (96)
419 2wbs_A Krueppel-like factor 4; 23.0 41 0.0014 25.8 2.2 22 38-62 63-84 (89)
420 1wjp_A Zinc finger protein 295 22.9 44 0.0015 26.9 2.5 29 32-63 8-36 (107)
421 3a2a_A Voltage-gated hydrogen 22.9 1.6E+02 0.0054 23.1 5.3 41 382-429 9-49 (58)
422 1ic2_A Tropomyosin alpha chain 22.9 3E+02 0.01 22.3 7.6 13 400-412 4-16 (81)
423 1uii_A Geminin; human, DNA rep 22.7 2E+02 0.007 24.2 6.4 48 384-434 27-82 (83)
424 1m1j_B Fibrinogen beta chain; 22.6 5.4E+02 0.018 27.8 11.4 99 233-331 89-196 (464)
425 3u1c_A Tropomyosin alpha-1 cha 22.4 3.4E+02 0.012 23.0 8.1 48 443-490 22-69 (101)
426 3u50_C Telomerase-associated p 22.2 26 0.0009 33.0 1.0 24 33-56 51-75 (172)
427 3k29_A Putative uncharacterize 22.2 5E+02 0.017 24.5 16.9 65 307-374 12-76 (169)
428 2v66_B Nuclear distribution pr 21.7 4.1E+02 0.014 23.4 13.7 25 397-421 86-110 (111)
429 1bhi_A CRE-BP1, ATF-2; CRE bin 21.6 48 0.0016 21.3 2.0 24 37-63 3-28 (38)
430 1x6h_A Transcriptional repress 21.6 45 0.0016 25.3 2.2 27 34-63 9-35 (86)
431 2zxx_A Geminin; coiled-coil, c 21.4 1.8E+02 0.0061 24.3 5.8 45 389-433 21-69 (79)
432 1x5p_A Negative elongation fac 21.2 98 0.0033 24.7 4.2 34 143-181 26-59 (97)
433 1s24_A Rubredoxin 2; electron 21.2 28 0.00095 29.6 0.9 16 39-54 67-82 (87)
434 4b6x_A AVRRPS4, avirulence pro 21.2 73 0.0025 26.9 3.4 8 479-486 43-50 (90)
435 1llm_C Chimera of ZIF23-GCN4; 21.1 47 0.0016 25.8 2.2 25 37-64 28-52 (88)
436 1ncs_A Peptide M30F, transcrip 21.0 48 0.0016 22.9 2.0 28 33-63 11-40 (47)
437 2ebt_A Krueppel-like factor 5; 20.9 48 0.0017 26.0 2.2 8 40-47 75-82 (100)
438 4emc_A Monopolin complex subun 20.9 2E+02 0.0068 27.7 6.8 52 300-351 6-57 (190)
439 2csh_A Zinc finger protein 297 20.6 48 0.0016 26.7 2.2 9 39-47 36-44 (110)
440 3hhm_B NISH2 P85alpha; PI3KCA, 20.3 7.4E+02 0.025 25.7 15.3 20 394-413 239-258 (373)
441 2kdx_A HYPA, hydrogenase/ureas 20.3 73 0.0025 27.6 3.4 30 18-47 44-80 (119)
442 4emc_A Monopolin complex subun 20.0 2.9E+02 0.0099 26.6 7.7 35 241-275 4-38 (190)
No 1
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=100.00 E-value=1.1e-65 Score=487.40 Aligned_cols=170 Identities=65% Similarity=1.136 Sum_probs=162.1
Q ss_pred CCCCceeeecceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChhhhHhHHHH
Q 008199 112 CSHDEKFVWPWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSF 191 (574)
Q Consensus 112 ~~~de~iVWPwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw~Gf~nA~~f 191 (574)
++++++|||||||||+||||++.+||+++|+|+++|+++|+..||+|++|+|+||++||+|+|||+|++||+||+||++|
T Consensus 3 ~~~~~~~VWPwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 3 CDHDEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp ---CCEEEESCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHHH
T ss_pred CCCCCEEECCCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHHH
Confidence 68899999999999999999666899999999999999997777999999999999999999999999999999999999
Q ss_pred HHHhhhcCCChhhhhhhccCCCcceeeeeccCCCCCCCcchhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008199 192 EKAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKNIIGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDK 271 (574)
Q Consensus 192 e~~Fe~~~~GKkdW~~~~~~~~~LYGwvAradD~~~~~~iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~i~~kn~ 271 (574)
|+||+.+||||+||.+++..+++|||||||+|||++.||||+||||+||||||+||++|++|++++||++|+++|++||+
T Consensus 83 ek~Fe~~~~GK~dW~~~~~~~~~lyGW~Ar~dDy~s~~~iG~~Lrk~gdLKTv~~i~~E~~rk~~~lv~~L~~~ie~kn~ 162 (172)
T 4e8u_A 83 DKAYTVDGHGKKDWLKKDGPKLGLYGWIARADDYNGNNIIGENLRKTGDLKTIAELTEEEARKQELLVQNLRQLVEEKKK 162 (172)
T ss_dssp HHHHHHTTCSHHHHTCSSSCCCSCEEEECBHHHHHSSSHHHHHHHTTCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHhhCCCCCCceEEEecccccccCCChHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988778999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhh
Q 008199 272 HLEEMKERFT 281 (574)
Q Consensus 272 ~l~elE~k~~ 281 (574)
||++||++||
T Consensus 163 ~l~ele~k~~ 172 (172)
T 4e8u_A 163 DMKEIEELCS 172 (172)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHhhC
Confidence 9999999996
No 2
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.29 E-value=2.2 Score=41.11 Aligned_cols=157 Identities=20% Similarity=0.248 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 008199 258 LVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKEL 337 (574)
Q Consensus 258 lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL 337 (574)
-|+|.+.........+.+|+.-|++-..|=+.+-.|-+.-+.+...-.+.++... .+.-.+.+.++..++....+.
T Consensus 11 e~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~----~~L~~E~e~~k~K~~~~~~e~ 86 (189)
T 2v71_A 11 ETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADN----QRLKYEVEALKEKLEHQYAQS 86 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888888888888888887766666655555555544444444433322 222333333333333333331
Q ss_pred ----HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008199 338 ----ELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDA 413 (574)
Q Consensus 338 ----~~r~k~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~ 413 (574)
..-.++|..+... +..|..-+.+-...|..|.- +.-..-.-+++-..--..++.++.-||-.|+.
T Consensus 87 ~~~~~~Lq~el~~l~~~----~~~l~~~ireLEq~NDdlEr-------~~R~~~~SleD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 87 YKQVSVLEDDLSQTRAI----KEQLHKYVRELEQANDDLER-------AKRATIMSLEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhHHHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222222222 22222222221122222221 22222333444444556677888889999999
Q ss_pred HHHHHHHHHHhhhhhh
Q 008199 414 KQALALEIERLKGSLN 429 (574)
Q Consensus 414 kQ~LELEi~qLkg~L~ 429 (574)
|+.|..++|+|+.-+-
T Consensus 156 Ke~l~~~~QRLkdE~r 171 (189)
T 2v71_A 156 KESLLVSVQRLKDEAR 171 (189)
T ss_dssp HHHHHCCC--------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999986544
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.06 E-value=0.071 Score=63.49 Aligned_cols=9 Identities=11% Similarity=0.276 Sum_probs=5.7
Q ss_pred hHHHHHHhh
Q 008199 19 YEDKSYKKL 27 (574)
Q Consensus 19 y~~k~y~~L 27 (574)
|-.+.|..+
T Consensus 554 ~~~kl~~~~ 562 (1184)
T 1i84_S 554 FVEKLIQEQ 562 (1184)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 566666666
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.07 E-value=0.16 Score=60.42 Aligned_cols=17 Identities=12% Similarity=0.067 Sum_probs=7.8
Q ss_pred eeEEEeeCCChhhhHhH
Q 008199 172 GCAVVEFHKDWPGLHNA 188 (574)
Q Consensus 172 g~aIV~F~~dw~Gf~nA 188 (574)
|-+-|-|....-...+.
T Consensus 769 G~TKVF~r~g~l~~LE~ 785 (1184)
T 1i84_S 769 GQSKIFFRTGVLAHLEE 785 (1184)
T ss_dssp CSSEEEECTTHHHHHHH
T ss_pred cCeEEEEechHHHHHHH
Confidence 34445555544444443
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.00 E-value=1.6 Score=47.12 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 008199 396 QKEDLHNRIIQLEKQ 410 (574)
Q Consensus 396 Eke~~~~ki~~Lekq 410 (574)
|...+-.+|.+|++.
T Consensus 566 e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 566 ETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333444444433
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.34 E-value=2.1 Score=46.23 Aligned_cols=14 Identities=29% Similarity=0.242 Sum_probs=5.7
Q ss_pred HHHHHHHHhhhhhh
Q 008199 416 ALALEIERLKGSLN 429 (574)
Q Consensus 416 ~LELEi~qLkg~L~ 429 (574)
.|+-|+.+|+..++
T Consensus 541 ~~~~~~~~le~~~~ 554 (597)
T 3oja_B 541 DLEQENIALEKQLD 554 (597)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHhhhHHHHHHHh
Confidence 33344444444333
No 7
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=91.79 E-value=5.8 Score=35.52 Aligned_cols=75 Identities=24% Similarity=0.290 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcch
Q 008199 400 LHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSND 479 (574)
Q Consensus 400 ~~~ki~~LekqL~~kQ~LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~lnq~Li~ker~sNd 479 (574)
+...+..|..||.+-+.+=.+.+.....|.--| .+|...|.+-.+.+++.+..|..|...-|+.-+
T Consensus 46 l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k--------------~eLe~~l~el~~rleeeee~~~~L~~~kkkle~ 111 (129)
T 2fxo_A 46 LLQEKNDLQLQVQAEQDNLADAEERCDQLIKNK--------------IQLEAKVKEMNKRLEDEEEMNAELTAKKRKLED 111 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666556655555553222 255666666667777778888888888888888
Q ss_pred HHHHHHHHH
Q 008199 480 ELQDARKEL 488 (574)
Q Consensus 480 ELqeARk~L 488 (574)
++++-++.|
T Consensus 112 e~~~Lk~~l 120 (129)
T 2fxo_A 112 ECSELKRDI 120 (129)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887777754
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.45 E-value=5.1 Score=47.59 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 008199 327 KLQLESQKKELELRGE 342 (574)
Q Consensus 327 ~~eLe~k~~eL~~r~k 342 (574)
..+|+++..+|..|-.
T Consensus 923 ~~~LE~kl~eLq~rL~ 938 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKID 938 (1080)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555443
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.37 E-value=58 Score=43.20 Aligned_cols=24 Identities=21% Similarity=0.595 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008199 324 EKLKLQLESQKKELELRGEELEKR 347 (574)
Q Consensus 324 ekl~~eLe~k~~eL~~r~k~L~k~ 347 (574)
..|+.+|..+..+|+.+.++-++.
T Consensus 1937 ~~l~~~L~~~~~~L~~k~~ea~~~ 1960 (3245)
T 3vkg_A 1937 KDLQVSLAQKNRELDVKNEQANQK 1960 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777776666655543
No 10
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=88.31 E-value=3.5 Score=45.23 Aligned_cols=93 Identities=10% Similarity=0.108 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008199 245 SEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLME---EKDRLLQSYNEEIKKIQLSARDHFQRIFT 321 (574)
Q Consensus 245 ~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~me---Ek~~l~~~yneEi~kmQ~~a~~~~~rI~~ 321 (574)
..+..+..+...+.|+.|+++++.-++.-+..+.-|+.+...|+.-.. +++....+|.+|++..++.-.+.++..|.
T Consensus 52 QglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQls 131 (562)
T 3ghg_A 52 KGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQ 131 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888899999999998888888888888777777755443 45666777777888877777777777665
Q ss_pred hhHHHHHHHHHHHHHH
Q 008199 322 DHEKLKLQLESQKKEL 337 (574)
Q Consensus 322 e~ekl~~eLe~k~~eL 337 (574)
--..|+.-|+++..+|
T Consensus 132 nIrvLQsnLedq~~kI 147 (562)
T 3ghg_A 132 HIQLLQKNVRAQLVDM 147 (562)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555666555555433
No 11
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=88.12 E-value=14 Score=33.00 Aligned_cols=48 Identities=25% Similarity=0.294 Sum_probs=34.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 008199 317 QRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEK 364 (574)
Q Consensus 317 ~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~k 364 (574)
..++..-.+.+.+|+.+.++|..|-.+.....+.-...+++|+.+...
T Consensus 68 EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~ 115 (129)
T 2fxo_A 68 EERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSE 115 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555677888888888888888887777777777777666544
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=87.38 E-value=90 Score=41.50 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-HHh--hcchHHHHHHHH
Q 008199 443 LQKMETVLKDLREKEGELDDLEALNQTLII-RER--KSNDELQDARKE 487 (574)
Q Consensus 443 ~~k~~~l~~~L~ek~~el~~~e~lnq~Li~-ker--~sNdELqeARk~ 487 (574)
..+.+.|+.+++....-|+.-+.|-..|-- |+| .+-.+|+...+.
T Consensus 2055 ~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~ 2102 (3245)
T 3vkg_A 2055 IRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMST 2102 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHh
Confidence 444555666666666666666666666652 333 233455544444
No 13
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.56 E-value=0.38 Score=40.63 Aligned_cols=59 Identities=24% Similarity=0.202 Sum_probs=45.1
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCC-CceeEEEeeCCChhhhHhHHHH
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRG-HSGCAVVEFHKDWPGLHNAMSF 191 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~G-h~g~aIV~F~~dw~Gf~nA~~f 191 (574)
+.++.|-|+|. ..+..+|++.|+. |.+..|+.++++.| ++|+|.|.|.+.- .-..|+.+
T Consensus 15 ~~~l~V~nLp~---------~~te~~l~~~F~~--~G~~~v~i~~d~~g~~~G~afV~F~~~~-~a~~Al~~ 74 (102)
T 1wez_A 15 GHCVHMRGLPY---------RATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHE-DAVAAMAK 74 (102)
T ss_dssp SCEEEEESCCT---------TCCHHHHHHSSCS--CCCSEEEEEESSSSCEEEEEEEECSSSH-HHHHHHTT
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHH--cCceEEEEEECCCCCEeeEEEEEECCHH-HHHHHHHh
Confidence 45678899996 3467899999999 76889999888776 5799999998643 34555544
No 14
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.38 E-value=0.94 Score=37.40 Aligned_cols=49 Identities=29% Similarity=0.342 Sum_probs=38.9
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCCCceeEEEeeCCC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRGHSGCAVVEFHKD 181 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~Gh~g~aIV~F~~d 181 (574)
-++.|-|+|. ..+...|++.|+. |.+ ..|+...+..++.|+|.|.|.+.
T Consensus 16 ~~l~V~nlp~---------~~t~~~l~~~f~~--~G~v~~v~i~~~~~~~~g~afV~f~~~ 65 (103)
T 2cq3_A 16 KRLHVSNIPF---------RFRDPDLRQMFGQ--FGKILDVEIIFNERGSKGFGFVTFENS 65 (103)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHGGG--TSCEEEEEEECCTTTTCCEEEEEESCH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEecCCCCcEEEEEEECCH
Confidence 4566889986 3577889999999 765 46677777778999999999874
No 15
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.90 E-value=1 Score=36.32 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=43.3
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCC-CceeEEEeeCCChhhhHhHHH
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRG-HSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~G-h~g~aIV~F~~dw~Gf~nA~~ 190 (574)
+.++.|-|+|. ..+...|++.|+. |.+..++..++..| ++|+|.|.|.+ ...-..|+.
T Consensus 10 ~~~l~v~nLp~---------~~t~~~l~~~F~~--~~i~~v~i~~~~~g~~~g~afV~f~~-~~~a~~A~~ 68 (91)
T 2dgw_A 10 CHTVKLRGAPF---------NVTEKNVMEFLAP--LKPVAIRIVRNAHGNKTGYIFVDFSN-EEEVKQALK 68 (91)
T ss_dssp CCEEEEECCCS---------SCCHHHHHHHHTT--SCCSEEEEEECTTSCEEEEEEEECSS-HHHHHHHHH
T ss_pred ccEEEEECCCC---------CCCHHHHHHHHhh--CCceEEEEEECCCCCCceEEEEEECC-HHHHHHHHH
Confidence 35677899986 3467889999999 87778888877555 58999999974 444455554
No 16
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=84.96 E-value=1.4 Score=36.22 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=38.7
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCC--CCceeEEEeeCCCh
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFR--GHSGCAVVEFHKDW 182 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~--Gh~g~aIV~F~~dw 182 (574)
+++|-|+|. ..+...|++.|+.-|..+..|+...++. .++|+|.|.|.+--
T Consensus 3 ~i~v~nLp~---------~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~ 55 (91)
T 2lxi_A 3 IVMLRMLPQ---------AATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQ 55 (91)
T ss_dssp EEEEETCCS---------SCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHH
Confidence 577889986 4577899999999444466777777653 47799999997643
No 17
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.94 E-value=0.77 Score=39.63 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=45.4
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCC-CceeEEEeeCCChhhhHhHHHHH
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRG-HSGCAVVEFHKDWPGLHNAMSFE 192 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~G-h~g~aIV~F~~dw~Gf~nA~~fe 192 (574)
.++.|-|+|. -.+...|++.|+. |.+..|+.++++.| .+|++.|.|... .....|+.++
T Consensus 17 ~~v~V~nLp~---------~~te~dl~~~F~~--~~v~~v~i~~d~~g~~~G~afV~F~~~-~~a~~Al~~~ 76 (109)
T 2dnn_A 17 LYVSVHGMPF---------SAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSP-QDTFEALKRN 76 (109)
T ss_dssp HEEEEECCCS---------SCCHHHHHHHTTT--SCCCEEEECCCTTCCCCSEEEEECSSH-HHHHHHHHTT
T ss_pred CEEEEeCCCC---------CCCHHHHHHHhcc--CCeeEEEEEECCCCCCCeEEEEEECCH-HHHHHHHhcC
Confidence 5788999996 3467889999998 87788988888776 589999999874 3344555443
No 18
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=84.80 E-value=19 Score=42.85 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHH
Q 008199 273 LEEMKERFTETSNSVEKLMEEKDRLL 298 (574)
Q Consensus 273 l~elE~k~~e~s~sL~~~meEk~~l~ 298 (574)
..+||.+..+.+..|....+++..|.
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~ 948 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLL 948 (1080)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666655544444333
No 19
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=84.05 E-value=34 Score=33.58 Aligned_cols=31 Identities=13% Similarity=0.234 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008199 385 NVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQ 415 (574)
Q Consensus 385 ~vlkLve~hkrEke~~~~ki~~LekqL~~kQ 415 (574)
.+.+-++..+++...+...|+++..++++.+
T Consensus 94 aL~kEie~~~~~i~~lE~eile~~e~ie~~~ 124 (256)
T 3na7_A 94 SLNIEEDIAKERSNQANREIENLQNEIKRKS 124 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666777777777777766666544
No 20
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=83.14 E-value=1.4 Score=36.97 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=43.7
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC----cccccccCCCC-CceeEEEeeCCChhhhHhHHHH
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP----TRVHPLWNFRG-HSGCAVVEFHKDWPGLHNAMSF 191 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p----~kv~~l~~~~G-h~g~aIV~F~~dw~Gf~nA~~f 191 (574)
+.++.|-|+|. ..+...|++.|+. |.+ ..|+.++++.| ++|+|.|.|.+ ...-..|+.+
T Consensus 11 ~~~l~V~nLp~---------~~te~~l~~~F~~--~g~~~~v~~v~i~~~~~g~~~G~afV~F~~-~~~a~~Al~~ 74 (107)
T 2lmi_A 11 VFLIRAQGLPW---------SCTMEDVLNFFSD--CRIRNGENGIHFLLNRDGKRRGDALIEMES-EQDVQKALEK 74 (107)
T ss_dssp CCEEEEECCCS---------SCCSHHHHHHTTT--SCBTTTTTTEECCCCTTSTTCSEEEEEBSS-HHHHHHHHTT
T ss_pred ccEEEEeCCCC---------CCCHHHHHHHHHh--cCCcCCcceEEEEECCCCCEeeEEEEEECC-HHHHHHHHHh
Confidence 34577889986 3467889999998 654 66777777665 68999999975 5556666664
No 21
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.82 E-value=1.6 Score=35.92 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=38.4
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCCCceeEEEeeCCC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRGHSGCAVVEFHKD 181 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~Gh~g~aIV~F~~d 181 (574)
-++.|-|+|. ..+...|++.|+. |.+ ..++...+..++.|++.|.|...
T Consensus 16 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~g~afV~f~~~ 65 (103)
T 2cqi_A 16 RTLYVGNLSR---------DVTEVLILQLFSQ--IGPCKSCKMITEHTSNDPYCFVEFYEH 65 (103)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHHHH--HSCEEEEEEECCCCSSCCEEEEEESSH
T ss_pred CEEEEeCCCc---------cCCHHHHHHHHHh--cCCEeEEEEEecCCCCCCEEEEEECCH
Confidence 4567889986 4577899999999 766 45666777777899999999853
No 22
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.79 E-value=1.4 Score=38.96 Aligned_cols=58 Identities=16% Similarity=0.062 Sum_probs=43.1
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-----ccccccCCCC-CceeEEEeeCCChhhhHhHHH
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-----RVHPLWNFRG-HSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-----kv~~l~~~~G-h~g~aIV~F~~dw~Gf~nA~~ 190 (574)
+..+.|-|+|. -.+...|++.|+. |.++ .|+.+++..| .+|++.|.|...- .-..|+.
T Consensus 23 ~~~v~V~nLp~---------~~te~dl~~~F~~--~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~-~A~~Al~ 86 (123)
T 2dha_A 23 QVIVRMRGLPF---------TATAEEVVAFFGQ--HCPITGGKEGILFVTYPDGRPTGDAFVLFACEE-YAQNALR 86 (123)
T ss_dssp CCEEEECSCCT---------TCCHHHHHHHHHT--TSCCTTGGGGEEEEECTTSCEEEEEEECCSSHH-HHHHHHT
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--hCCccCCcceEEEEECCCCCEeeEEEEEECCHH-HHHHHHH
Confidence 45678899986 3467899999999 8763 6777777666 5799999998644 3444554
No 23
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.41 E-value=1.5 Score=37.08 Aligned_cols=52 Identities=27% Similarity=0.298 Sum_probs=39.5
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCCCceeEEEeeCCChhh
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRGHSGCAVVEFHKDWPG 184 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~Gh~g~aIV~F~~dw~G 184 (574)
-++.|-|++. ..+...|++.|+. |.+ ..++...+..+..|+|.|.|.+.-.-
T Consensus 30 ~~l~V~nLp~---------~~te~~l~~~F~~--~G~i~~v~i~~~~~~~kg~afV~f~~~~~A 82 (109)
T 2err_A 30 KRLHVSNIPF---------RFRDPDLRQMFGQ--FGKILDVEIIFNERGSKGFGFVTFENSADA 82 (109)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHGGG--TCCCSCEEECCBTTBCTTEEEEECCCSHHH
T ss_pred CEEEEECCCC---------cCCHHHHHHHHHh--cCCEEEEEEEECCCCCceEEEEEECCHHHH
Confidence 3456889886 4577889999999 765 46666677778899999999875543
No 24
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.89 E-value=1.7 Score=35.65 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=37.5
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCCh
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDW 182 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw 182 (574)
..+.|-|+|. ..+...|++.|+. |.++.+...++ .+.|+|.|.|.+.-
T Consensus 20 ~~l~V~nL~~---------~~t~~~l~~~F~~--~G~v~~~~~~~--~~~g~afV~f~~~~ 67 (97)
T 2e5j_A 20 ADVYVGNLPR---------DARVSDLKRALRE--LGSVPLRLTWQ--GPRRRAFLHYPDSA 67 (97)
T ss_dssp CEEEEECCCT---------TCCHHHHHHHHHH--TTCCCSEEEEE--TTTTEEEEECSSHH
T ss_pred CEEEEeCCCC---------cCcHHHHHHHHHh--cCCEEEEEEcC--CCCcEEEEEECCHH
Confidence 4677889986 4577899999999 87877666654 57799999998744
No 25
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.71 E-value=1.9 Score=36.00 Aligned_cols=50 Identities=26% Similarity=0.288 Sum_probs=37.3
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCCh
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDW 182 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw 182 (574)
.++.|-|+|. ..+...|++.|+. |.++....+.....+.|+|.|.|...-
T Consensus 23 ~~l~V~nLp~---------~~t~~~l~~~F~~--~G~v~~~~i~~~~~~~g~afV~f~~~~ 72 (109)
T 1x4a_A 23 CRIYVGNLPP---------DIRTKDIEDVFYK--YGAIRDIDLKNRRGGPPFAFVEFEDPR 72 (109)
T ss_dssp SEEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEECCSSSSSCCEEEEESCHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEECCCCCcEEEEEECCHH
Confidence 4677899986 3477889999999 877654445445557899999997643
No 26
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.71 E-value=1.3 Score=37.58 Aligned_cols=57 Identities=21% Similarity=0.215 Sum_probs=41.1
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcc--cccccCCCC-CceeEEEeeCCChhhhHhHHHH
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTR--VHPLWNFRG-HSGCAVVEFHKDWPGLHNAMSF 191 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~k--v~~l~~~~G-h~g~aIV~F~~dw~Gf~nA~~f 191 (574)
++.|-|+|. ..+...|++.|+. |.++. |+.++++.| +.|+|.|.|.+ -..-..|+..
T Consensus 17 ~l~V~nLp~---------~~t~~~l~~~F~~--~g~v~~~v~i~~d~~g~~~G~afV~F~~-~~~a~~Al~~ 76 (114)
T 2cpy_A 17 CAHITNIPF---------SITKMDVLQFLEG--IPVDENAVHVLVDNNGQGLGQALVQFKN-EDDARKSERL 76 (114)
T ss_dssp EEEEESCCT---------TSCHHHHHHHTTT--SCCCSTTEEECCCTTSSCSSCEEEECSS-HHHHHHHGGG
T ss_pred EEEEeCcCC---------cCCHHHHHHHHHh--CCCcCCeEEEEECCCCCcceEEEEEECC-HHHHHHHHHh
Confidence 466889986 3467889999999 65553 888887766 68999999975 3444444433
No 27
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=81.66 E-value=1.4 Score=39.20 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=43.1
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc--ccccccCCCC-CceeEEEeeCCChhhhHhHHH
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT--RVHPLWNFRG-HSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~--kv~~l~~~~G-h~g~aIV~F~~dw~Gf~nA~~ 190 (574)
.++.|-|+|. -.+...|++.|+. |.+. .|+..+++.| .+|++.|.|.+.-. ...|+.
T Consensus 43 ~~lfVgnLp~---------~~te~dL~~~F~~--~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~-A~~Al~ 102 (126)
T 2hgm_A 43 GFVRLRGLPF---------GCTKEEIVQFFSG--LEIVPNGITLPVDPEGKITGEAFVQFASQEL-AEKALG 102 (126)
T ss_dssp CEEEEECCCT---------TCCHHHHHHHTTT--SCEEEEEEECCCCSSSSSCSEEEEEESSTTH-HHHHHT
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHhc--CCceeeEEEEEECCCCCCceEEEEEECCHHH-HHHHHH
Confidence 3467899996 3477899999999 8666 7888888776 58999999986543 344544
No 28
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=79.88 E-value=2.5 Score=34.55 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=36.4
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCCCceeEEEeeCCCh
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRGHSGCAVVEFHKDW 182 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~Gh~g~aIV~F~~dw 182 (574)
|+++.|-|+|. ..+...|++.|+. |.+. .++... .+.|++.|.|...-
T Consensus 11 ~~~l~V~~Lp~---------~~te~~L~~~F~~--~G~i~~v~i~~---~srGfaFV~F~~~~ 59 (89)
T 3d2w_A 11 GSKVFVGRCTE---------DMTAEELQQFFCQ--YGEVVDVFIPK---PFRAFAFVTFADDK 59 (89)
T ss_dssp CCEEEEESCCT---------TCCHHHHHHHHTT--TSCEEEEECCS---SCCSEEEEEESCHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHhc--cCCEEEEEEee---CCCCEEEEEECCHH
Confidence 67888999986 4577899999999 7653 444443 37899999998744
No 29
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=79.66 E-value=1.1 Score=40.36 Aligned_cols=49 Identities=24% Similarity=0.266 Sum_probs=40.1
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCC-CceeEEEeeCC
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRG-HSGCAVVEFHK 180 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~G-h~g~aIV~F~~ 180 (574)
+.++.|-|+|. ..+..+|++.|+. |.+..|+.++++.| .+|++.|.|..
T Consensus 46 ~~~lfV~nLp~---------~~te~dL~~~F~~--~Gi~~v~i~~d~~g~srGfaFV~F~~ 95 (139)
T 2hgn_A 46 GHCVHMRGLPY---------KATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFAT 95 (139)
T ss_dssp CCCEECCSCCT---------TCCHHHHHHHHCS--CCCSEEECCCSSSSCSSCCCEEECSH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEECCCCCCceEEEEEeCC
Confidence 34677889986 3467899999999 66889999988776 58999999975
No 30
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=79.50 E-value=36 Score=36.07 Aligned_cols=92 Identities=10% Similarity=0.120 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008199 247 MMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEE---KDRLLQSYNEEIKKIQLSARDHFQRIFTDH 323 (574)
Q Consensus 247 i~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meE---k~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ 323 (574)
+..+..+.-...|..|++.|..-.+.-...-.-++.++..|+....+ ++....+|.++++.-+..-.+.+..-|..-
T Consensus 57 ~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~i 136 (390)
T 1deq_A 57 LIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRI 136 (390)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44455566666666666666666666666655555666666655544 577778888888776666666666666655
Q ss_pred HHHHHHHHHHHHHHH
Q 008199 324 EKLKLQLESQKKELE 338 (574)
Q Consensus 324 ekl~~eLe~k~~eL~ 338 (574)
.-|+.-|+.+..++.
T Consensus 137 r~Lq~~l~~q~~kiq 151 (390)
T 1deq_A 137 NLLQKNVRDQLVDMK 151 (390)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666655443
No 31
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=79.43 E-value=2 Score=36.97 Aligned_cols=58 Identities=21% Similarity=0.198 Sum_probs=43.3
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC----cccccccCCCC-CceeEEEeeCCChhhhHhHHHH
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP----TRVHPLWNFRG-HSGCAVVEFHKDWPGLHNAMSF 191 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p----~kv~~l~~~~G-h~g~aIV~F~~dw~Gf~nA~~f 191 (574)
.++.|-|+|. ..+..+|++.|+. |.+ ..|+..+++.| ++|+|.|.|.+ -..-..|+.+
T Consensus 18 ~~l~V~nLp~---------~~te~~l~~~F~~--~G~~~~v~~v~i~~~~~g~~~G~afV~F~~-~~~a~~Al~~ 80 (118)
T 2db1_A 18 YVVKLRGLPW---------SCSIEDVQNFLSD--CTIHDGVAGVHFIYTREGRQSGEAFVELES-EDDVKLALKK 80 (118)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHTTT--SCBTTGGGGEEEEECSSSCEEEEEEEEBSS-HHHHHHHGGG
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHH--cCCccCceeEEEEECCCCCCCeEEEEEECC-HHHHHHHHhc
Confidence 4577899986 3467889999999 665 67777777776 58999999975 4555566654
No 32
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.28 E-value=2 Score=35.86 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=40.1
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcc--cccccCCCC-CceeEEEeeCCChhhhHhHHH
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTR--VHPLWNFRG-HSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~k--v~~l~~~~G-h~g~aIV~F~~dw~Gf~nA~~ 190 (574)
..+.|-|+|. ..+...|++.|+. |.++. ++..++..| ++|+|.|.|... ..-..|+.
T Consensus 16 ~~l~V~nLp~---------~~te~~l~~~F~~--~G~v~~~v~i~~~~~g~~~G~afV~F~~~-~~a~~A~~ 75 (104)
T 1wg5_A 16 GFVRLRGLPF---------GCSKEEIVQFFSG--LEIVPNGMTLPVDFQGRSTGEAFVQFASQ-EIAEKALK 75 (104)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHTTT--CCEEEEEEECCBCSSSCBCSEEEEEESSH-HHHHHHHT
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCcceeEEEEECCCCCcceEEEEEECCH-HHHHHHHH
Confidence 4677899986 3467889999998 77654 666666555 579999999753 33344443
No 33
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.00 E-value=1.8 Score=35.86 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=42.5
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCC---CCceeEEEeeCCChhhhHhHHHH
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFR---GHSGCAVVEFHKDWPGLHNAMSF 191 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~---Gh~g~aIV~F~~dw~Gf~nA~~f 191 (574)
|.++.|-|+|. ..+...|++.|+. |.+..|....++. -+.|+|.|.|.+. ..-..|+.|
T Consensus 15 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~Gi~~v~i~~~~~~~g~~~g~afV~f~~~-~~a~~A~~l 76 (104)
T 1wi8_A 15 PYTAFLGNLPY---------DVTEESIKEFFRG--LNISAVRLPREPSNPERLKGFGYAEFEDL-DSLLSALSL 76 (104)
T ss_dssp CEEEEEESCCS---------SCCHHHHHHHTTT--SCEEEEECCBCSSCTTSBCSCEEEEESSH-HHHHHHHGG
T ss_pred CCEEEEeCCCC---------cCCHHHHHHHHHH--CCceEEEEecCCCCCCCcCeEEEEEECCH-HHHHHHHhc
Confidence 46788999986 3477889999999 5577777777653 4689999999753 334555544
No 34
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.96 E-value=3 Score=34.89 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=40.7
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcc---------cccccCCC-C-CceeEEEeeCCChhhhHhHH
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTR---------VHPLWNFR-G-HSGCAVVEFHKDWPGLHNAM 189 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~k---------v~~l~~~~-G-h~g~aIV~F~~dw~Gf~nA~ 189 (574)
+.++.|-|+|. ..+...|++.|+. |.++. ++..+++. | +.|+|.|.|.+.- .-..|+
T Consensus 15 ~~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~-~A~~Ai 82 (113)
T 2cpe_A 15 NSAIYVQGLND---------SVTLDDLADFFKQ--CGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPP-TAKAAV 82 (113)
T ss_dssp CCEEEEECCCT---------TCCHHHHHHHHTT--TSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHH-HHHHHH
T ss_pred CCEEEEcCCCC---------CCCHHHHHHHHHh--cCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHH-HHHHHH
Confidence 34677899986 3467899999999 87776 67776633 3 5799999998543 333444
Q ss_pred H
Q 008199 190 S 190 (574)
Q Consensus 190 ~ 190 (574)
.
T Consensus 83 ~ 83 (113)
T 2cpe_A 83 E 83 (113)
T ss_dssp H
T ss_pred H
Confidence 3
No 35
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=77.74 E-value=3.2 Score=33.42 Aligned_cols=51 Identities=20% Similarity=0.156 Sum_probs=37.8
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCC-CceeEEEeeCCChh
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRG-HSGCAVVEFHKDWP 183 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~G-h~g~aIV~F~~dw~ 183 (574)
.++.|-|+|. ..+...|++.|+. |.+ ..++...++.| ++|++.|.|...-.
T Consensus 17 ~~l~v~nlp~---------~~~~~~l~~~F~~--~G~i~~v~i~~~~~g~~~g~afV~f~~~~~ 69 (95)
T 2ywk_A 17 RTVFVGNLEA---------RVREEILYELFLQ--AGPLTKVTICKDREGKPKSFGFVCFKHPES 69 (95)
T ss_dssp GEEEEECCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTSCEEEEEEEEESSTHH
T ss_pred CEEEEECCCC---------CCCHHHHHHHHHh--cCCEEEEEEEECCCCCCceEEEEEECCHHH
Confidence 4677899986 3467889999999 765 45555555555 47999999987654
No 36
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=77.21 E-value=3.4 Score=34.11 Aligned_cols=50 Identities=20% Similarity=0.307 Sum_probs=37.9
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCCC-ceeEEEeeCCC
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRGH-SGCAVVEFHKD 181 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~Gh-~g~aIV~F~~d 181 (574)
+..+.|-|+|. ..+...|++.|+. |.++ .+....++.|. .|+|.|.|.+.
T Consensus 29 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~g~~~g~afV~f~~~ 80 (107)
T 3ulh_A 29 GGKLLVSNLDF---------GVSDADIQELFAE--FGTLKKAAVHYDRSGRSLGTADVHFERK 80 (107)
T ss_dssp SEEEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEEEEECTTSCEEEEEEEEESSH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEECCCCCcceEEEEEECCH
Confidence 34577889986 4577889999999 8664 66666666664 79999999853
No 37
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=76.72 E-value=2.4 Score=33.48 Aligned_cols=52 Identities=12% Similarity=0.080 Sum_probs=37.4
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCC--C-CceeEEEeeCCChh
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFR--G-HSGCAVVEFHKDWP 183 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~--G-h~g~aIV~F~~dw~ 183 (574)
|-.+.|-|+|. ..+...|++.|+. |.+. .+....+.. + +.|+|.|.|.+.-.
T Consensus 4 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~ 59 (88)
T 4a8x_A 4 PTKVHIGRLTR---------NVTKDHIMEIFST--YGKIKMIDMPVERMHPHLSKGYAYVEFENPDE 59 (88)
T ss_dssp CCEEEEECCCT---------TCCHHHHHHHHHT--TSCEEEEECCEETTEEEEECSEEEEEESSHHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--CCCEEEEEEEeCCCCCCCCCcEEEEEEecHHH
Confidence 45677889986 4577899999999 7654 444444442 4 78999999987543
No 38
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=76.71 E-value=2.1 Score=36.42 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=38.6
Q ss_pred EEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCCCceeEEEeeCCChh
Q 008199 124 GIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRGHSGCAVVEFHKDWP 183 (574)
Q Consensus 124 gIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~Gh~g~aIV~F~~dw~ 183 (574)
+.|-|+|. ..+...|++.|+. |.+ ..|+...+..++.|++.|.|.+.-.
T Consensus 8 lfV~nLp~---------~~te~~L~~~F~~--~G~v~~v~i~~d~~~~kg~afV~f~~~~~ 57 (115)
T 4f25_A 8 IFIKNLDK---------SIDNKALYDTFSA--FGNILSCKVVCDENGSKGYGFVHFETQEA 57 (115)
T ss_dssp EEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEEETTEEEEEEEEEESCHHH
T ss_pred EEECCCCC---------CCCHHHHHHHHhc--cCCEEEEEEeecCCCCCceEEEEECCHHH
Confidence 55788886 3477899999999 766 4677777777889999999986433
No 39
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=76.67 E-value=2.4 Score=34.21 Aligned_cols=50 Identities=22% Similarity=0.116 Sum_probs=36.6
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcc-cccccCCC--CCceeEEEeeCCC
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTR-VHPLWNFR--GHSGCAVVEFHKD 181 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~k-v~~l~~~~--Gh~g~aIV~F~~d 181 (574)
|.++.|-|+|. ..+...|++.|+. |.+.. +..+..+. -++|++.|.|.+.
T Consensus 15 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~~~~~~~~~~g~~~g~afV~f~~~ 67 (95)
T 2ek1_A 15 PTVIKVQNMPF---------TVSIDEILDFFYG--YQVIPGSVCLKYNEKGMPTGEAMVAFESR 67 (95)
T ss_dssp CEEEEEECCCT---------TCCHHHHHHHTTT--SCBCTTCCEEEECTTSCEEEEEEEEESSH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCccceEEEEeCCCCCEeeEEEEEECCH
Confidence 56788999996 3577889999999 76654 55554332 3679999999764
No 40
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=76.63 E-value=3.2 Score=34.82 Aligned_cols=49 Identities=18% Similarity=0.240 Sum_probs=35.8
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCCh
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDW 182 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw 182 (574)
++.|-|+|. ..+...|++.|+. |.++....+.......|+|.|.|.+.-
T Consensus 10 ~l~V~nlp~---------~~t~~~l~~~F~~--~G~v~~v~i~~~~~~~g~afV~f~~~~ 58 (115)
T 3lqv_A 10 ILYIRNLPY---------KITAEEMYDIFGK--YGPIRQIRVGNTPETRGTAYVVYEDIF 58 (115)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEEEECSTTTTTCEEEEESSHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEeeCCCCCcEEEEEECCHH
Confidence 567889986 4577889999999 876554444334445899999998643
No 41
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=76.12 E-value=30 Score=38.06 Aligned_cols=81 Identities=12% Similarity=0.240 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 008199 253 RKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLES 332 (574)
Q Consensus 253 rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~ 332 (574)
....+.+..+.+++..+.....+++..|++.+.-|++..+.-+.-++.--.-|+.+|..-+ .+.-+.+||-..++.
T Consensus 81 Kdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLe----dq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 81 KDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVR----AQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 4566777788888878888888999999999999999887744333333355666655544 445566889999999
Q ss_pred HHHHH
Q 008199 333 QKKEL 337 (574)
Q Consensus 333 k~~eL 337 (574)
|++.-
T Consensus 157 qirsC 161 (562)
T 3ghg_A 157 KIRSC 161 (562)
T ss_dssp HHHHG
T ss_pred HHHhc
Confidence 98753
No 42
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=76.10 E-value=4.1 Score=33.49 Aligned_cols=50 Identities=22% Similarity=0.251 Sum_probs=36.5
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccC---CCCCceeEEEeeCCCh
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWN---FRGHSGCAVVEFHKDW 182 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~---~~Gh~g~aIV~F~~dw 182 (574)
.++.|-|+|. ..+...|++.|+. |.++ .++...+ ..-+.|+|.|.|..--
T Consensus 16 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~ 69 (107)
T 2cph_A 16 SKILVRNIPF---------QANQREIRELFST--FGELKTVRLPKKMTGTGAHRGFGFVDFITKQ 69 (107)
T ss_dssp CCEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEECCCCCSSSCSSCSEEEEEESSHH
T ss_pred CEEEEeCCCC---------cCCHHHHHHHHHc--cCCeEEEEEecCCCCCCCcCceEEEEECCHH
Confidence 4566889986 3477889999999 7664 4555554 3346899999998743
No 43
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=74.17 E-value=4.1 Score=32.58 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=35.3
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcc-cccccCCCCCceeEEEeeCCC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTR-VHPLWNFRGHSGCAVVEFHKD 181 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~k-v~~l~~~~Gh~g~aIV~F~~d 181 (574)
-.+.|-|+|. ..+...|++.|+. |.+.. +........+.|++.|.|.+.
T Consensus 9 ~~l~V~nlp~---------~~t~~~l~~~f~~--~G~v~~~~i~~~~g~~~g~afV~f~~~ 58 (92)
T 2dgv_A 9 CQIFVRNLPF---------DFTWKMLKDKFNE--CGHVLYADIKMENGKSKGCGVVKFESP 58 (92)
T ss_dssp CEEEECSCCT---------TCCHHHHHHHHHT--TSCEEEEEEEESSSCEEEEEEEEESSH
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEccCCCcceEEEEEECCH
Confidence 4567889986 4577899999999 76544 444443334689999999863
No 44
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=74.08 E-value=2.6 Score=34.71 Aligned_cols=58 Identities=21% Similarity=0.311 Sum_probs=41.1
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCC--CCceeEEEeeCCChhhhHhHHH
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFR--GHSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~--Gh~g~aIV~F~~dw~Gf~nA~~ 190 (574)
+.++.|-|+|. ..+...|++.|+. |....++...++. -+.|++.|.|.+ ...-..|+.
T Consensus 15 ~~~l~V~nLp~---------~~t~~~l~~~F~~--~gi~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~A~~ 74 (103)
T 2dng_A 15 PYTAYVGNLPF---------NTVQGDIDAIFKD--LSIRSVRLVRDKDTDKFKGFCYVEFDE-VDSLKEALT 74 (103)
T ss_dssp CEEEEEESCCT---------TCCHHHHHHHTTT--SCEEEEEEEECSSSCSEEEEEEEEESS-HHHHHHHGG
T ss_pred CeEEEEeCCCC---------CCCHHHHHHHHHh--CCceEEEEeecCCCCccceEEEEEECC-HHHHHHHHh
Confidence 45677889986 3577889999999 7566777776653 368999999975 333444443
No 45
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.34 E-value=3.1 Score=35.67 Aligned_cols=57 Identities=14% Similarity=0.253 Sum_probs=39.4
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcc--cccccCCCC-CceeEEEeeCCChhhhHhHHH
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTR--VHPLWNFRG-HSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~k--v~~l~~~~G-h~g~aIV~F~~dw~Gf~nA~~ 190 (574)
.++.|-|+|. ..+...|++.|+. |.++. +.+.....| +.|+|.|.|.+.- .-..|+.
T Consensus 26 ~~l~V~nLp~---------~~te~~l~~~F~~--~G~v~~~~~~~~~~~g~~~G~afV~F~~~~-~a~~Al~ 85 (124)
T 1wel_A 26 FCVYLKGLPF---------EAENKHVIDFFKK--LDIVEDSIYIAYGPNGKATGEGFVEFRNEA-DYKAALC 85 (124)
T ss_dssp CEEEEECCCT---------TCCHHHHHHHSCS--SCBCTTTCEEEECTTSSEEEEEEEEBSSSH-HHHHHHT
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHh--cCCccceEEEEECCCCCCCeEEEEEECCHH-HHHHHHH
Confidence 5678999986 3467889999998 76654 333444555 4799999998654 3444554
No 46
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=72.50 E-value=3.5 Score=33.50 Aligned_cols=50 Identities=24% Similarity=0.195 Sum_probs=35.9
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcc-cccccCC-CC-CceeEEEeeCCC
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTR-VHPLWNF-RG-HSGCAVVEFHKD 181 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~k-v~~l~~~-~G-h~g~aIV~F~~d 181 (574)
|.++.|-|+|. ..+...|++.|+. |.+.. +..+..+ .| +.|+|.|.|.+.
T Consensus 15 ~~~l~v~nLp~---------~~t~~~l~~~F~~--~G~v~~~~~~~~~~~g~~~g~afV~f~~~ 67 (98)
T 2cqp_A 15 PTIIKVQNMPF---------TVSIDEILDFFYG--YQVIPGSVCLKYNEKGMPTGEAMVAFESR 67 (98)
T ss_dssp SEEEEEESCCT---------TCCHHHHHHHTTT--SCCCTTTCEEEECSSSCEEEEEEEEESCH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHH--cCCccceEEEEECCCCCeeeEEEEEECCH
Confidence 45677889986 3577889999999 77654 4444433 33 579999999764
No 47
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=71.57 E-value=4.4 Score=35.49 Aligned_cols=49 Identities=20% Similarity=0.239 Sum_probs=37.3
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCCC-ceeEEEeeCCCh
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRGH-SGCAVVEFHKDW 182 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~Gh-~g~aIV~F~~dw 182 (574)
.+.|-|+|. ..+...|++.|+. |.+ ..+....++.|. +|++.|.|.+.-
T Consensus 97 ~l~v~nl~~---------~~t~~~l~~~F~~--~G~i~~v~~~~~~~g~~~g~afV~f~~~~ 147 (175)
T 3nmr_A 97 KLFIGMISK---------KCTENDIRVMFSS--FGQIEECRILRGPDGLSRGCAFVTFTTRA 147 (175)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTSCEEEEEEEEESSHH
T ss_pred eEEEcCCCC---------cCCHHHHHHHHHh--CCCEEEEEEEECCCCCEEEEEEEEECCHH
Confidence 567889986 3577899999999 765 556666666664 899999998743
No 48
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.38 E-value=5.9 Score=31.81 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=35.6
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCC--CCCceeEEEeeCCC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNF--RGHSGCAVVEFHKD 181 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~--~Gh~g~aIV~F~~d 181 (574)
-++.|-|+|. ..+...|++.|+. |.+ ..+....++ .-+.|+|.|.|.+-
T Consensus 6 ~~l~v~nlp~---------~~t~~~l~~~f~~--~G~v~~v~i~~~~~~~~~~g~afV~f~~~ 57 (95)
T 2dnz_A 6 SGLYVGSLHF---------NITEDMLRGIFEP--FGKIDNIVLMKDSDTGRSKGYGFITFSDS 57 (95)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHHTT--TSCEEEEEEECCSSSCCCCSEEEEEESCH
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHh--cCCEeEEEEeecCCCCceeeEEEEEECCH
Confidence 3567889986 4577889999999 765 445555543 34679999999873
No 49
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.34 E-value=5.3 Score=32.58 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=36.6
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCC-CceeEEEeeCCCh
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRG-HSGCAVVEFHKDW 182 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~G-h~g~aIV~F~~dw 182 (574)
-++.|-|+|. ..+...|++.|+. |.+ ..++...++.| +.|+|.|.|...-
T Consensus 18 ~~l~v~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 69 (100)
T 2do4_A 18 HKLFISGLPF---------SCTKEELEEICKA--HGTVKDLRLVTNRAGKPKGLAYVEYENES 69 (100)
T ss_dssp SCEEEESCCT---------TCCHHHHHHHHTT--TSCEEEEEEEECTTSCEEEEEEEEESSHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--CCCeEEEEEEECCCCCEEeEEEEEECCHH
Confidence 4567889986 4577889999999 765 45555556544 5699999997633
No 50
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=71.27 E-value=5.5 Score=32.70 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=37.1
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCC-CceeEEEeeCCCh
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRG-HSGCAVVEFHKDW 182 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~G-h~g~aIV~F~~dw 182 (574)
+.++.|-|+|. ..+...|++.|+. |.+ ..+....++.| +.|+|.|.|...-
T Consensus 15 ~~~l~v~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 67 (105)
T 2dnh_A 15 DRKLFVGMLNK---------QQSEEDVLRLFQP--FGVIDECTVLRGPDGSSKGCAFVKFSSHT 67 (105)
T ss_dssp CCEEEEESCCT---------TCCHHHHHHHHTT--TSCEEEEEEEECSSSCEEEEEEEEESSHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEECCCCCcCcEEEEEeCCHH
Confidence 45677889986 3467889999999 765 45555555554 4799999998743
No 51
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=71.22 E-value=5.1 Score=32.67 Aligned_cols=51 Identities=14% Similarity=0.042 Sum_probs=37.7
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcc---------cccccCCC--CCceeEEEeeCCCh
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTR---------VHPLWNFR--GHSGCAVVEFHKDW 182 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~k---------v~~l~~~~--Gh~g~aIV~F~~dw 182 (574)
+.++.|-|+|. ..+...|++.|+. |.+.. ++...++. ...|+|.|.|.+.-
T Consensus 13 ~~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~ 74 (99)
T 2la6_A 13 NNTIFVQGLGE---------NVTIESVADYFKQ--IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPP 74 (99)
T ss_dssp CSEEEEECCCS---------SCCHHHHHHHHTT--TSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHH--hCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHH
Confidence 45677889986 4578899999999 76655 55565533 35799999998644
No 52
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=71.14 E-value=4.1 Score=36.77 Aligned_cols=57 Identities=18% Similarity=0.343 Sum_probs=39.3
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcc-cccccCC-CC-CceeEEEeeCCChhhhHhHH
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTR-VHPLWNF-RG-HSGCAVVEFHKDWPGLHNAM 189 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~k-v~~l~~~-~G-h~g~aIV~F~~dw~Gf~nA~ 189 (574)
++++.|-|+|. ..+...|.+.|+. |.++. |....++ .| +.|+|+|.|.. ...-..|+
T Consensus 72 ~~~l~V~nLp~---------~~t~~~L~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~A~~Ai 131 (165)
T 1rk8_A 72 GWILFVTSIHE---------EAQEDEIQEKFCD--YGEIKNIHLNLDRRTGFSKGYALVEYET-HKQALAAK 131 (165)
T ss_dssp CEEEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTTSSEEEEEEEEESS-HHHHHHHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHhhc--CCCEEEEEEEecCCCCcEeeEEEEEECC-HHHHHHHH
Confidence 57788999996 4578899999999 76654 4444442 23 57999999985 33334444
No 53
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.68 E-value=7.7 Score=31.16 Aligned_cols=49 Identities=14% Similarity=0.108 Sum_probs=35.6
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-cc-ccccC-C-CCCceeEEEeeCCC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RV-HPLWN-F-RGHSGCAVVEFHKD 181 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv-~~l~~-~-~Gh~g~aIV~F~~d 181 (574)
.++.|-|+|. ..+...|++.|+. |.+. .+ +...+ . ..+.|+|.|.|.+.
T Consensus 6 ~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~~~~i~~~~~~g~~~g~afV~f~~~ 58 (96)
T 1x5t_A 6 SGIFIGNLDP---------EIDEKLLYDTFSA--FGVILQTPKIMRDPDTGNSKGYAFINFASF 58 (96)
T ss_dssp CEEEEECCCT---------TCCHHHHHHHHHT--TSCBSSCCEECCCTTTCSCCSEEEEEBSSH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeeEEEEEEEcCCCCCcCeEEEEEECCH
Confidence 4567889986 3477899999999 7765 44 45554 2 23679999999864
No 54
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=70.50 E-value=6.3 Score=33.59 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=36.9
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCC-CceeEEEeeCCC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRG-HSGCAVVEFHKD 181 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~G-h~g~aIV~F~~d 181 (574)
.++.|-|++. ..+...|++.|+. |.+ ..++...+..| +.|+|.|.|.+-
T Consensus 36 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~v~~v~i~~~~~g~~~g~afV~f~~~ 86 (124)
T 2kt5_A 36 AKLLVSNLDF---------GVSDADIQELFAE--FGTLKKAAVDYDRSGRSLGTADVHFERR 86 (124)
T ss_dssp EEEEEESCCS---------SCCHHHHHHHHHT--TSCCSEEEEECCSSSSCCSEEEEEESSH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeeEEEEEECCCCCEeeEEEEEECCH
Confidence 4577889986 4577889999999 754 55666666655 679999999763
No 55
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=70.43 E-value=5.1 Score=32.98 Aligned_cols=56 Identities=18% Similarity=0.203 Sum_probs=38.3
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCC--CCceeEEEeeCCChhhhHhHH
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFR--GHSGCAVVEFHKDWPGLHNAM 189 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~--Gh~g~aIV~F~~dw~Gf~nA~ 189 (574)
-++.|-|+|. ..+...|++.|+. |.+ ..|+...++. -+.|+|.|.|.+--. -..|+
T Consensus 14 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~-A~~A~ 72 (106)
T 2dgp_A 14 IKLFIGQIPR---------NLDEKDLKPLFEE--FGKIYELTVLKDRFTGMHKGCAFLTYCERES-ALKAQ 72 (106)
T ss_dssp EEEEEESCCT---------TCCHHHHHHHHHH--HSCCCEEECCCCSSSCSCCSEEEEEESSHHH-HHHHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeeEEEEEecCCCCCcceEEEEEECCHHH-HHHHH
Confidence 4566889986 3467889999999 754 4555555433 367999999986433 33444
No 56
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.05 E-value=5.7 Score=32.42 Aligned_cols=49 Identities=12% Similarity=0.111 Sum_probs=35.5
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCC--CCceeEEEeeCCC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFR--GHSGCAVVEFHKD 181 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~--Gh~g~aIV~F~~d 181 (574)
.++.|-|+|. ..+...|++.|+. |.++ .+....++. .+.|+|.|.|.+-
T Consensus 13 ~~l~v~nLp~---------~~t~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 64 (102)
T 1x5s_A 13 GKLFVGGLSF---------DTNEQSLEQVFSK--YGQISEVVVVKDRETQRSRGFGFVTFENI 64 (102)
T ss_dssp SEEEEESCCT---------TCCHHHHHHHHHH--HSCCCEEEECCCSSSCSCCSEEEEECSSH
T ss_pred CEEEEECCCC---------CCCHHHHHHHHHh--cCCeEEEEEEeCCCCCCcccEEEEEECCH
Confidence 4567889986 3477889999999 7654 555555432 3678999999763
No 57
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=69.84 E-value=3.8 Score=36.71 Aligned_cols=57 Identities=21% Similarity=0.219 Sum_probs=42.0
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC----cccccccCCCC-CceeEEEeeCCChhhhHhHHH
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP----TRVHPLWNFRG-HSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p----~kv~~l~~~~G-h~g~aIV~F~~dw~Gf~nA~~ 190 (574)
.++.|-|+|. -.+...|++.|+. |.+ ..|+..+++.| .+|++.|.|.+ -..-..|+.
T Consensus 45 ~~lfVgnLp~---------~~te~dL~~~F~~--~G~v~~v~~v~i~~d~~g~srG~aFV~F~~-~e~a~~Al~ 106 (136)
T 2hgl_A 45 FVVKLRGLPW---------SCSVEDVQNFLSD--CTIHDGAAGVHFIYTREGRQSGEAFVELGS-EDDVKMALK 106 (136)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHTTT--CCCSSSSTTEEEEECSSSCEEEEEEEECSS-HHHHHHHHT
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHH--hCCcCceeEEEEEECCCCCCCeEEEEEECC-HHHHHHHHh
Confidence 4567899986 3467889999999 664 57778877776 57999999985 334445554
No 58
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.63 E-value=6.9 Score=32.98 Aligned_cols=57 Identities=11% Similarity=0.131 Sum_probs=39.3
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCC-CceeEEEeeCCChhhhHhHHH
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRG-HSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~G-h~g~aIV~F~~dw~Gf~nA~~ 190 (574)
-++.|-|+|. -.+...|++.|+. |.++ .|+...++.| +.|++.|.|.+ -..-..|+.
T Consensus 12 ~~lfV~~Lp~---------~~te~~L~~~F~~--~G~v~~v~i~~d~~g~~rG~aFV~F~~-~e~a~~Ai~ 70 (103)
T 1s79_A 12 RSVYIKGFPT---------DATLDDIKEWLED--KGQVLNIQMRRTLHKAFKGSIFVVFDS-IESAKKFVE 70 (103)
T ss_dssp GCEEEECCCT---------TCCHHHHHHHHHT--SSCEEEEEEECCCTTSCCCEEEEEESS-HHHHHHHHT
T ss_pred CEEEEECCCC---------CCCHHHHHHHHhh--cCCEEEEEEEECCCCCCccEEEEEECC-HHHHHHHHH
Confidence 4567889886 3467899999999 8764 4555555444 68999999975 333344444
No 59
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=69.54 E-value=7.3 Score=31.54 Aligned_cols=49 Identities=16% Similarity=0.240 Sum_probs=35.2
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCCh
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDW 182 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~--~Gh~g~aIV~F~~dw 182 (574)
++.|-|+|. ..+...|++.|+. |.+. .++...++ ..+.|+|.|.|.+.-
T Consensus 4 ~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 55 (96)
T 2x1f_A 4 VVYLGSIPY---------DQTEEQILDLCSN--VGPVINLKMMFDPQTGRSKGYAFIEFRDLE 55 (96)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEECCBCTTTCCBCSEEEEEESSHH
T ss_pred EEEEECCCC---------CCCHHHHHHHHHh--cCCEEEEEEEeCCCCCccceEEEEEECCHH
Confidence 456788885 4577889999999 7654 55555553 346899999998643
No 60
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=69.34 E-value=6.2 Score=34.06 Aligned_cols=49 Identities=22% Similarity=0.251 Sum_probs=34.5
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCC
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHK 180 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~ 180 (574)
++.+.|-|+|. ..+...|++.|+.-|+....+.... ....|++.|.|.+
T Consensus 28 ~~~l~VgnLp~---------~~te~dL~~~F~~~G~~v~~v~i~~--~~~rGfaFV~F~~ 76 (111)
T 2jvr_A 28 RYRITMKNLPE---------GCSWQDLKDLARENSLETTFSSVNT--RDFDGTGALEFPS 76 (111)
T ss_dssp CEEEEEECSSC---------CCCHHHHHHHHHHHTCCCSEEECSS--CSSSCCEEEEESS
T ss_pred CCEEEEECCCC---------CCCHHHHHHHHHHhCCeeEEEEEEc--CCCCCEEEEEECC
Confidence 46788999996 4477899999999443233333322 3478999999986
No 61
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=69.01 E-value=6.2 Score=31.05 Aligned_cols=49 Identities=10% Similarity=0.215 Sum_probs=35.3
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCC--CCCceeEEEeeCCC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNF--RGHSGCAVVEFHKD 181 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~--~Gh~g~aIV~F~~d 181 (574)
.++.|-|+|. ..+...|++.|+. |.+ ..++...++ ..+.|+|.|.|.+.
T Consensus 7 ~~l~v~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 58 (87)
T 3bs9_A 7 FHVFVGDLSP---------EITTAAIAAAFAP--FGRISDARVVKDMATGKSKGYGFVSFFNK 58 (87)
T ss_dssp EEEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred eEEEEeCCCC---------CCCHHHHHHHHHh--cCCEeEEEEEecCCCCccceEEEEEECCH
Confidence 4567889886 4577889999999 765 445555543 34689999999763
No 62
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=68.92 E-value=70 Score=29.26 Aligned_cols=41 Identities=10% Similarity=0.110 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHH
Q 008199 446 METVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARK 486 (574)
Q Consensus 446 ~~~l~~~L~ek~~el~~~e~lnq~Li~ker~sNdELqeARk 486 (574)
+..+...+......+..++.-...+-..-...+.++..++.
T Consensus 218 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (284)
T 1c1g_A 218 EDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLED 258 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444433333333333333333334433333
No 63
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=68.54 E-value=5.5 Score=32.59 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=40.0
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCC-CceeEEEeeCCChhhhHhHHH
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRG-HSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~G-h~g~aIV~F~~dw~Gf~nA~~ 190 (574)
|..+.|-|+|. ..+...|++.|+. |.+ ..++...++.| +.|+|.|.|.+.-. -..|+.
T Consensus 9 ~~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~g~~~g~afV~f~~~~~-a~~Ai~ 68 (102)
T 2xs2_A 9 PNTVFVGGIDV---------RMDETEIRSFFAR--YGSVKEVKIITDRTGVSKGYGFVSFYNDVD-VQKIVE 68 (102)
T ss_dssp EEEEEEECCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTSCEEEEEEEEESSCCC-HHHHTT
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--CCCeEEEEEEECCCCCccceEEEEECCHHH-HHHHHh
Confidence 35677889886 3477889999999 765 45555555544 57999999986443 244443
No 64
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=68.16 E-value=87 Score=30.07 Aligned_cols=122 Identities=21% Similarity=0.251 Sum_probs=67.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 008199 319 IFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKE 398 (574)
Q Consensus 319 I~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke 398 (574)
......-|-.+||.....++.+.++|....+.-..+...+....+..... .+-+.+.++. -+..-...++
T Consensus 36 FqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e-~~~~~~~Lq~---------el~~l~~~~~ 105 (189)
T 2v71_A 36 FQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ-SYKQVSVLED---------DLSQTRAIKE 105 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---------HHHHHHHHHH
Confidence 33444556677777777777777777655544444433332111110000 0111222221 1223345678
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHH
Q 008199 399 DLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKE 457 (574)
Q Consensus 399 ~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~ 457 (574)
.+..+|..||..-| -||-....+...|+-+.++-+ ....++.=|..+|.+|+
T Consensus 106 ~l~~~ireLEq~ND---dlEr~~R~~~~SleD~e~kln----~aiEr~alLE~El~EKe 157 (189)
T 2v71_A 106 QLHKYVRELEQAND---DLERAKRATIMSLEDFEQRLN----QAIERNAFLESELDEKE 157 (189)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh---HHHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 88899999998887 366666666666766655432 33556667777777655
No 65
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=68.15 E-value=6.4 Score=30.22 Aligned_cols=56 Identities=13% Similarity=0.210 Sum_probs=37.7
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCChhhhHhHHH
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~--~Gh~g~aIV~F~~dw~Gf~nA~~ 190 (574)
++.|-|+|. ..+...|++.|+. |.+. .+....++ ..+.|+|.|.|.+.- .-..|++
T Consensus 2 ~l~v~nlp~---------~~t~~~l~~~F~~--~G~v~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~a~~ 60 (77)
T 1uaw_A 2 KMFIGGLSW---------QTTQEGLREYFGQ--FGEVKECLVMRDPLTKRSRGFGFVTFMDQA-GVDKVLA 60 (77)
T ss_dssp CEEEESCCS---------SCCSHHHHHHHTT--TSCCCCEEEECCCCSSSCSSEEEECCCCTT-HHHHHHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEecCCCCCCcCceEEEEEcCHH-HHHHHHH
Confidence 466888886 3477889999999 7654 44444443 346899999998643 3344443
No 66
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=68.10 E-value=66 Score=28.60 Aligned_cols=42 Identities=19% Similarity=0.356 Sum_probs=2.9
Q ss_pred HhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008199 270 DKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLS 311 (574)
Q Consensus 270 n~~l~elE~k~~e~s~sL~~~meEk~~l~~~yneEi~kmQ~~ 311 (574)
+++.+++|.-|......|+........-......||..+.+.
T Consensus 5 ~knr~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~ 46 (131)
T 3tnu_A 5 EKNRKDAEEWFFTKTEELNREVATNSELVQSGKSEISELRRT 46 (131)
T ss_dssp ------------------------------------CHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344566777776666666665555444445555555555443
No 67
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=67.56 E-value=4.4 Score=32.84 Aligned_cols=49 Identities=12% Similarity=0.078 Sum_probs=35.5
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCC-----CCceeEEEeeCCC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFR-----GHSGCAVVEFHKD 181 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~-----Gh~g~aIV~F~~d 181 (574)
-++.|-|+|. ..+...|++.|+. |.++ .+....++. -+.|+|.|.|.+.
T Consensus 6 ~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~ 60 (98)
T 2cpf_A 6 SGLFIKNLNF---------STTEETLKGVFSK--VGAIKSCTISKKKNKAGVLLSMGFGFVEYKKP 60 (98)
T ss_dssp CCEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEEEEEEECTTCCEEEEEEEEEEESSH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEecCCCCCCcCcccEEEEEECCH
Confidence 3467889986 3577899999999 8764 455554443 4679999999863
No 68
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=67.47 E-value=5.7 Score=30.42 Aligned_cols=55 Identities=13% Similarity=0.199 Sum_probs=37.5
Q ss_pred EEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCChhhhHhHHH
Q 008199 124 GIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 124 gIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~--~Gh~g~aIV~F~~dw~Gf~nA~~ 190 (574)
+.|-|+|. ..+...|++.|+. |.+. .+....++ ..++|+|.|.|.+.- .-..|+.
T Consensus 2 l~v~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~Ai~ 59 (75)
T 1iqt_A 2 IFVGGLSP---------DTPEEKIREYFGG--FGEVESIELPMDNKTNKRRGFCFITFKEEE-PVKKIME 59 (75)
T ss_dssp EEESCCCS---------SCCHHHHHHHHHH--HSCCSEECCCCSCCCSSSCCCEEEECSSSH-HHHHHHT
T ss_pred EEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEecCCCCCcCCEEEEEECCHH-HHHHHHH
Confidence 45778876 3577889999999 7664 44444443 346899999998654 3455554
No 69
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=67.28 E-value=9.8 Score=29.13 Aligned_cols=55 Identities=11% Similarity=0.201 Sum_probs=37.2
Q ss_pred EEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCChhhhHhHHH
Q 008199 124 GIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 124 gIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~--~Gh~g~aIV~F~~dw~Gf~nA~~ 190 (574)
+.|-|+|. ..+...|++.|+. |.+. .+....++ .-++|+|.|.|.+. ..-..|+.
T Consensus 2 l~v~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~a~~ 59 (75)
T 2mss_A 2 IFVGGLSV---------NTTVEDVKHYFEQ--FGKVDDAMLMFDKTTNRHRGFGFVTFESE-DIVEKVCE 59 (75)
T ss_dssp EEEECCCS---------SCCHHHHHHHHHT--TSCCSEECCCBCSSSTTSCBEEEEECSCH-HHHHHHHS
T ss_pred EEEecCCC---------CCCHHHHHHHHHh--cCCEEEEEEEecCCCCCcCcEEEEEECCH-HHHHHHHH
Confidence 45778886 4577889999999 7664 44444443 34679999999874 33344443
No 70
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.95 E-value=7.3 Score=31.74 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=35.7
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCCh
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDW 182 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~--~Gh~g~aIV~F~~dw 182 (574)
.++.|-|+|. ..+...|++.|+. |.++ .+....++ ..+.|+|.|.|..--
T Consensus 13 ~~l~V~nLp~---------~~t~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 65 (102)
T 2cqb_A 13 RVLYVGGLAE---------EVDDKVLHAAFIP--FGDITDIQIPLDYETEKHRGFAFVEFELAE 65 (102)
T ss_dssp SCEEEESCCS---------SCCHHHHHHHHTT--TSCCCCEECCCCSSSCCCSSEEEECCSSHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHhhc--cCCEEEEEEEecCCCCCcceEEEEEECCHH
Confidence 4566889986 3467899999999 7654 44444442 247899999998643
No 71
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.94 E-value=8.3 Score=31.59 Aligned_cols=50 Identities=22% Similarity=0.206 Sum_probs=36.6
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCC
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKD 181 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~--~Gh~g~aIV~F~~d 181 (574)
+..+.|-|+|. ..+...|++.|+. |.++ .+....++ .-+.|++.|.|...
T Consensus 15 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 67 (105)
T 1x5u_A 15 DATVYVGGLDE---------KVSEPLLWELFLQ--AGPVVNTHMPKDRVTGQHQGYGFVEFLSE 67 (105)
T ss_dssp TTEEEEECCCT---------TCCHHHHHHHHHT--TSCEEEEECCBCSSSCSBCSCEEEEESSH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEecCCCCcCCcEEEEEECCH
Confidence 35677889986 3467889999999 7654 55555554 34678999999774
No 72
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.78 E-value=13 Score=31.10 Aligned_cols=60 Identities=17% Similarity=0.152 Sum_probs=41.4
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCC--CCceeEEEeeCCChhhhHhHHHHH
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFR--GHSGCAVVEFHKDWPGLHNAMSFE 192 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~--Gh~g~aIV~F~~dw~Gf~nA~~fe 192 (574)
..++.|-|++. ..+...|++.|+. |.+ ..|+...++. -+.|+|.|.|.+ ...-..|+.|+
T Consensus 25 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~A~~l~ 87 (114)
T 2cq4_A 25 ARTVFCMQLAA---------RIRPRDLEDFFSA--VGKVRDVRIISDRNSRRSKGIAYVEFCE-IQSVPLAIGLT 87 (114)
T ss_dssp HTEEEEESCCT---------TCCHHHHHHHHTT--TSCEEEEEECCSCCSSSCCCCEEEEESC-GGGHHHHHHHT
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--CCCEeEEEEEecCCCCccCcEEEEEeCc-HHHHHHHHHcC
Confidence 35677899986 3467889999999 765 4555555554 467999999965 44445555443
No 73
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.59 E-value=7.6 Score=31.77 Aligned_cols=51 Identities=24% Similarity=0.178 Sum_probs=36.7
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCC--CCceeEEEeeCCChh
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFR--GHSGCAVVEFHKDWP 183 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~--Gh~g~aIV~F~~dw~ 183 (574)
-++.|-|+|. ..+...|++.|+. |.++ .+....++. -+.|+|.|.|.+.-.
T Consensus 14 ~~l~V~nLp~---------~~t~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 67 (103)
T 2dnm_A 14 ITLKVDNLTY---------RTSPDSLRRVFEK--YGRVGDVYIPREPHTKAPRGFAFVRFHDRRD 67 (103)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHHTT--TSCEEEEECCBCSSSCSBCSCEEEEESSSSH
T ss_pred eEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEeCCCCCCCCeEEEEEECCHHH
Confidence 4577889986 3577889999999 7654 455554433 367999999987543
No 74
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=66.57 E-value=7.2 Score=30.37 Aligned_cols=49 Identities=18% Similarity=0.399 Sum_probs=35.1
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCC--CCCceeEEEeeCCC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNF--RGHSGCAVVEFHKD 181 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~--~Gh~g~aIV~F~~d 181 (574)
+.+.|-|+|. ..+...|++.|+. |.+ ..+....++ ..++|++.|.|.+.
T Consensus 2 ~~l~V~nlp~---------~~t~~~l~~~f~~--~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 53 (83)
T 3md1_A 2 FNLFVGDLNV---------NVDDETLRNAFKD--FPSYLSGHVMWDMQTGSSRGYGFVSFTSQ 53 (83)
T ss_dssp EEEEEECCCT---------TCCHHHHHHHHTT--STTEEEEEEEECTTTCCEEEEEEEEESCH
T ss_pred eEEEEeCCCC---------CCCHHHHHHHHHh--cCCeeEEEEEEcCCCCCccceEEEEECCH
Confidence 3567889886 3467889999999 765 445555443 34589999999864
No 75
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=66.33 E-value=3.5 Score=26.87 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=18.5
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
.++.+|.||.|+.. +.....|.+|-.
T Consensus 7 ~~~k~~~C~~C~k~---f~~~~~l~~H~~ 32 (37)
T 1p7a_A 7 TGIKPFQCPDCDRS---FSRSDHLALHRK 32 (37)
T ss_dssp CCSSSBCCTTTCCC---BSSHHHHHHHHG
T ss_pred CCCCCccCCCCCcc---cCcHHHHHHHHH
Confidence 45678999999743 555667777743
No 76
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=66.24 E-value=8 Score=32.05 Aligned_cols=50 Identities=16% Similarity=0.313 Sum_probs=35.6
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCCh
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDW 182 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~--~Gh~g~aIV~F~~dw 182 (574)
.++.|-|+|. ..+...|++.|+. |.++ .+....++ ..+.|+|.|.|.+.-
T Consensus 27 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 79 (110)
T 1oo0_B 27 WILFVTSIHE---------EAQEDEIQEKFCD--YGEIKNIHLNLDRRTGFSKGYALVEYETHK 79 (110)
T ss_dssp EEEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEECCBCTTTSSBCSEEEEEESSHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEecCCCCCcceEEEEEECCHH
Confidence 4567889986 4577889999999 7654 44444443 346799999998543
No 77
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=66.01 E-value=9.3 Score=31.53 Aligned_cols=50 Identities=20% Similarity=0.247 Sum_probs=36.4
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCC--CCceeEEEeeCCCh
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFR--GHSGCAVVEFHKDW 182 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~--Gh~g~aIV~F~~dw 182 (574)
.++.|-|+|. ..+...|++.|+. |.++ .++..+++. -+.|+|.|.|.+.-
T Consensus 16 ~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 68 (111)
T 1x4h_A 16 KTVFIRNLSF---------DSEEEALGEVLQQ--FGDLKYVRVVLHPDTEHSKGCAFAQFMTQE 68 (111)
T ss_dssp CCEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEECCBCSSSCCBCSEEEEEESSHH
T ss_pred CEEEEECCCC---------CCCHHHHHHHHHh--cCCeEEEEEEecCCCCCCccEEEEEECCHH
Confidence 3566889986 3577889999999 7764 455555543 36899999998644
No 78
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.81 E-value=5.2 Score=32.66 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=34.5
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCC-CceeEEEeeCCC
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRG-HSGCAVVEFHKD 181 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~G-h~g~aIV~F~~d 181 (574)
+.++.|-|+|. ..+...|++.|+. |.++ +.+....| +.|++.|.|.+.
T Consensus 15 ~~~l~V~nLp~---------~~t~~~l~~~F~~--~g~v--~~~~~~~g~~~g~afV~f~~~ 63 (101)
T 2fc9_A 15 SKTLVLSNLSY---------SATEETLQEVFEK--ATFI--KVPQNQNGKSKGYAFIEFASF 63 (101)
T ss_dssp CSEEEEESCCT---------TCCHHHHHHHCSS--CSEE--ECCBCSSSCBCSEEEEECSSH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--CCEE--EEEECCCCCEeeEEEEEECCH
Confidence 34567889986 3577889999888 7555 44444444 679999999853
No 79
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.74 E-value=6.3 Score=31.57 Aligned_cols=48 Identities=19% Similarity=0.253 Sum_probs=35.1
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCC--CCceeEEEeeCCC
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFR--GHSGCAVVEFHKD 181 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~--Gh~g~aIV~F~~d 181 (574)
++.|-|+|. ..+...|++.|+. |.++ .+....++. .++|++.|.|.+.
T Consensus 18 ~l~V~nlp~---------~~t~~~l~~~f~~--~G~v~~v~i~~~~~~~~~~g~afV~f~~~ 68 (94)
T 2e5h_A 18 TVYVSNLPF---------SLTNNDLYRIFSK--YGKVVKVTIMKDKDTRKSKGVAFILFLDK 68 (94)
T ss_dssp SEEEESCCT---------TSCHHHHHHHTTT--TSCEEEEEECCCSSSCCCTTCEEEEESCH
T ss_pred EEEEECCCC---------CCCHHHHHHHHHh--cCCeEEEEEEeCCCCCCcccEEEEEECCH
Confidence 566889986 4577889999999 7654 555555443 3679999999763
No 80
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=65.45 E-value=7.2 Score=32.81 Aligned_cols=58 Identities=12% Similarity=0.190 Sum_probs=38.9
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCChhhhHhHHH
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~--~Gh~g~aIV~F~~dw~Gf~nA~~ 190 (574)
+..+.|-|+|. ..+...|++.|+. |.++ .++...++ ..+.|++.|.|.+ -..-..|+.
T Consensus 25 ~~~lfV~nLp~---------~~te~~L~~~F~~--~G~i~~v~i~~~~~tg~~kg~afV~f~~-~~~A~~Ai~ 85 (109)
T 2rs2_A 25 GCKMFIGGLSW---------QTTQEGLREYFGQ--FGEVKECLVMRDPLTKRSRGFGFVTFMD-QAGVDKVLA 85 (109)
T ss_dssp -CCEEEESCCT---------TCCHHHHHHHHTT--TSCEEEEEECCCTTTCCCTTCEEEEESS-HHHHHHHHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHc--cCCeEEEEEEECCCCCCcCcEEEEEECC-HHHHHHHHH
Confidence 35667889986 3467889999999 7654 45555554 3468999999975 333344443
No 81
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.36 E-value=5.7 Score=33.55 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=36.3
Q ss_pred EEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCC-----CCceeEEEeeCCCh
Q 008199 124 GIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFR-----GHSGCAVVEFHKDW 182 (574)
Q Consensus 124 gIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~-----Gh~g~aIV~F~~dw 182 (574)
+.|-|+|. ..+...|++.|+. |.++.+....... -+.|+|.|.|...-
T Consensus 11 lfVgnLp~---------~~te~~L~~~F~~--~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~ 63 (114)
T 2dnl_A 11 VFVGGLPP---------DIDEDEITASFRR--FGPLVVDWPHKAESKSYFPPKGYAFLLFQEES 63 (114)
T ss_dssp EEEECCCT---------TCCHHHHHHHTTT--TCCCCEECTTSSSSCCCSCTTSEEEECCSSHH
T ss_pred EEEcCCCC---------CCCHHHHHHHHHh--cCCEEEEEeecCCCCCCCCcccEEEEEECCHH
Confidence 55788886 3467889999999 8887766666543 46899999998743
No 82
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=65.13 E-value=8.2 Score=30.27 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=33.4
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCC-CCceeEEEeeCCCh
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFR-GHSGCAVVEFHKDW 182 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~-Gh~g~aIV~F~~dw 182 (574)
++.|-|+|. ...+. ...+...|++.|+. |.+..-..+.... .+.|+|.|.|.+.-
T Consensus 3 ~l~V~nLp~-~~~~~--~~~t~~~l~~~F~~--~G~i~~v~i~~~~g~~~g~afV~f~~~~ 58 (81)
T 2krb_A 3 VIVVDNVPQ-VGPDR--LEKLKNVIHKIFSK--FGKITNDFYPEEDGKTKGYIFLEYASPA 58 (81)
T ss_dssp EEEEESCCC-CCTTT--HHHHHHHHHHHHHT--TCCEEEEECCCBTTBCCCEEEEEESSHH
T ss_pred EEEEeCCCC-CcHHH--HHHHHHHHHHHHhh--cCCeEEEEecCCCCcEeEEEEEEECCHH
Confidence 466888885 11110 01145789999999 7765433333333 45799999998643
No 83
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=65.02 E-value=7 Score=32.11 Aligned_cols=50 Identities=16% Similarity=0.321 Sum_probs=36.1
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCC--CCceeEEEeeCCCh
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFR--GHSGCAVVEFHKDW 182 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~--Gh~g~aIV~F~~dw 182 (574)
.++.|-|+|. ..+...|++.|+. |.++ .+....++. .+.|+|.|.|.+.-
T Consensus 24 ~~l~V~nlp~---------~~t~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 76 (106)
T 1p27_B 24 WILFVTGVHE---------EATEEDIHDKFAE--YGEIKNIHLNLDRRTGYLKGYTLVEYETYK 76 (106)
T ss_dssp EEEEEECCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTTSSEEEEEEEEESCHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHhc--cCCeEEEEEEecCCCCceeeEEEEEECCHH
Confidence 4677889986 4477889999999 7654 444444433 45799999998643
No 84
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=64.91 E-value=7.4 Score=32.43 Aligned_cols=53 Identities=21% Similarity=0.278 Sum_probs=36.7
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCCCceeEEEeeCCChhhhHhHHH
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~Gh~g~aIV~F~~dw~Gf~nA~~ 190 (574)
+..+.|-|+|. ..+...|++.|+. |.+ ..+....+ |++.|.|... ..-..|+.
T Consensus 15 ~~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~~~i~~~-----g~afV~f~~~-~~a~~Ai~ 68 (108)
T 1x4c_A 15 ENRVVVSGLPP---------SGSWQDLKDHMRE--AGDVCYADVYRD-----GTGVVEFVRK-EDMTYAVR 68 (108)
T ss_dssp CCEEEEESCCS---------SCCHHHHHHHHGG--GSCEEEEEEETT-----TEEEEEESSH-HHHHHHHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCEeEEEEecC-----CEEEEEECCH-HHHHHHHH
Confidence 45678999996 4577899999999 755 34444433 8999999773 33444444
No 85
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.87 E-value=9 Score=31.08 Aligned_cols=56 Identities=18% Similarity=0.349 Sum_probs=38.1
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCChhhhHhHHH
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~--~Gh~g~aIV~F~~dw~Gf~nA~~ 190 (574)
.+.|-|+|. ..+...|++.|+. |.++ .++...++ ..+.|+|.|.|.+. ..-..|+.
T Consensus 12 ~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~A~~ 70 (99)
T 2dgs_A 12 KIFVGGIPH---------NCGETELREYFKK--FGVVTEVVMIYDAEKQRPRGFGFITFEDE-QSVDQAVN 70 (99)
T ss_dssp EEEEESCCS---------SCCHHHHHHHHSS--SSCEEEEEECCCTTTCSCCSEEEEEESSH-HHHHHHHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEeCCCCCCCCceEEEEECCH-HHHHHHHH
Confidence 456889986 3477889999999 7654 55555543 33789999999763 33344444
No 86
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.55 E-value=5.1 Score=32.84 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=35.6
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCCCceeEEEeeCCC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRGHSGCAVVEFHKD 181 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~Gh~g~aIV~F~~d 181 (574)
..+.|-|+|. ..+...|++.|+. |.++ .+....+...+.|+|.|.|..-
T Consensus 16 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~g~~~g~afV~f~~~ 65 (103)
T 2d9p_A 16 VNLYVKNLDD---------GIDDERLRKAFSP--FGTITSAKVMMEGGRSKGFGFVCFSSP 65 (103)
T ss_dssp CCEEEECCCT---------TCCHHHHHHTTTT--TSCEEEEEEEECSSSEEEEEEEEESSH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEcCCCCcCEEEEEEECCH
Confidence 3566889986 3577889999998 7654 5555555344689999999853
No 87
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.36 E-value=8.2 Score=32.11 Aligned_cols=48 Identities=23% Similarity=0.228 Sum_probs=36.0
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCC-CceeEEEeeCCC
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRG-HSGCAVVEFHKD 181 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~G-h~g~aIV~F~~d 181 (574)
++.|-|+|. ..+...|++.|+. |.+ ..++...++.| +.|++.|.|.+-
T Consensus 17 ~l~V~nlp~---------~~~~~~l~~~f~~--~G~i~~~~i~~~~~g~~~g~afV~f~~~ 66 (114)
T 2do0_A 17 TVFVANLDY---------KVGWKKLKEVFSM--AGVVVRADILEDKDGKSRGIGTVTFEQS 66 (114)
T ss_dssp CEEEESCCT---------TCCHHHHHHHHTT--TSCEEEEEEEECTTCSEEEEEEEEESSH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEECCCCCeeeEEEEEECCH
Confidence 566889986 3477889999999 765 45566666655 479999999863
No 88
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=64.26 E-value=11 Score=31.86 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=35.9
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCCCceeEEEeeCCChhhhHhHHH
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRGHSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~Gh~g~aIV~F~~dw~Gf~nA~~ 190 (574)
++.+.|-|+|. ..+...|++.|+. |.++ .+....+ |++.|.|.+ ...-..|+.
T Consensus 16 ~~~l~V~nLp~---------~~t~~~l~~~F~~--~G~v~~~~i~~~-----g~afV~f~~-~~~a~~Ai~ 69 (115)
T 3beg_B 16 ENRVVVSGLPP---------SGSWQDLKDHMRE--AGDVCYADVYRD-----GTGVVEFVR-KEDMTYAVR 69 (115)
T ss_dssp -CCEEEEECCS---------SCCTTHHHHHHGG--GSCEEEEEECTT-----SEEEEEESS-HHHHHHHHH
T ss_pred CcEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEecC-----CEEEEEECC-HHHHHHHHH
Confidence 36678999996 3467889999999 7553 3433332 899999987 334445554
No 89
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=64.20 E-value=3.5 Score=24.83 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=15.6
Q ss_pred CeeeccCCCCCCccccChHHHHhhh
Q 008199 39 EAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 39 ~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
++|.|+.|+.. +.....|..|.
T Consensus 1 ~~~~C~~C~k~---f~~~~~l~~H~ 22 (29)
T 2m0f_A 1 GPLKCRECGKQ---FTTSGNLKRHL 22 (29)
T ss_dssp CCEECTTTSCE---ESCHHHHHHHH
T ss_pred CCccCCCCCCc---cCChhHHHHHH
Confidence 47999999733 55566777774
No 90
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=64.17 E-value=10 Score=32.41 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=36.6
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCCh
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDW 182 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~--~Gh~g~aIV~F~~dw 182 (574)
+..+.|-|+|. ..+...|++.|+. |.++ .++...++ ..+.|+|.|.|.+--
T Consensus 63 ~~~l~v~nlp~---------~~~~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 116 (140)
T 2ku7_A 63 KRVLYVGGLAE---------EVDDKVLHAAFIP--FGDITDIQIPLDYETEKHRGFAFVEFELAE 116 (140)
T ss_dssp CCEEEEECCCT---------TCCHHHHHHHHGG--GSCEEEEECCCCTTTCCCCSEEEEEESCHH
T ss_pred CcEEEEEeCCC---------CCCHHHHHHHHHh--cCCEEEEEEeecCCCCCcCcEEEEEECCHH
Confidence 34566889986 3567889999999 7664 45555543 346899999998643
No 91
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=63.95 E-value=5.2 Score=32.92 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=39.8
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCC---CCCceeEEEeeCCChhhhHhHHHH
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNF---RGHSGCAVVEFHKDWPGLHNAMSF 191 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~---~Gh~g~aIV~F~~dw~Gf~nA~~f 191 (574)
.++.|-|++. ..+...|++.|+. |....++...+. .-+.|+|.|.|.+ ...-..|+.+
T Consensus 20 ~~l~V~nLp~---------~~t~~~l~~~F~~--~Gi~~v~i~~~~~~~g~~~g~afV~f~~-~~~a~~Ai~l 80 (100)
T 2j76_E 20 YTAFLGNLPY---------DVTEESIKEFFRG--LNISAVRLPREPSNPERLKGFGYAEFED-LDSLLSALSL 80 (100)
T ss_dssp CEEEESCCSS---------CCSSSHHHHHSCS--SCEEEEECSCCTTTTCCCCSCEEEEECC-HHHHHHHHHT
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEecCCcCCccCeEEEEEECC-HHHHHHHHhc
Confidence 4566889886 3467789999999 546666666654 2368999999975 4444555543
No 92
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.87 E-value=10 Score=31.71 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=35.2
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHK 180 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~--~Gh~g~aIV~F~~ 180 (574)
-++.|-|+|. ..+...|++.|+. |.++ .++...++ .-+.|+|.|.|..
T Consensus 18 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~ 68 (116)
T 2cqd_A 18 TKIFVGGLPY---------HTTDASLRKYFEG--FGDIEEAVVITDRQTGKSRGYGFVTMAD 68 (116)
T ss_dssp SEEEEECCCS---------SCCHHHHHHHHHT--TSCEEEEEESCCSSSCCCCSEEEEEESS
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--CCCeeEEEEEEcCCCCccceEEEEEECC
Confidence 3566889986 3477889999999 8654 55555543 3467999999975
No 93
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=63.33 E-value=49 Score=35.99 Aligned_cols=57 Identities=9% Similarity=0.120 Sum_probs=38.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHhc-cCCcccc--------eeec
Q 008199 436 DDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELINALKEL-SGRAHIG--------LKRM 506 (574)
Q Consensus 436 ~~~d~~~~~k~~~l~~~L~ek~~el~~~e~lnq~Li~ker~sNdELqeARk~LI~~l~~~-~~~~~Ig--------iKrm 506 (574)
+++-++++..+.+|.+++.+.++++. ++++....++..+.++ ...++|| |++-
T Consensus 70 ~~~~~~l~~~~~~l~~~i~~le~~~~------------------~~~~~~~~~l~~iPN~~~~~vP~g~~e~~n~~v~~~ 131 (485)
T 3qne_A 70 KEDAKDLIAEKEKLSNEKKEIIEKEA------------------EADKNLRSKINQVGNIVHESVVDSQDEENNELVRTW 131 (485)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHTTSCCCCCTTSCCCSCGGGCEEEEEE
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhCCCCCCccCCCCCCccCCEEEEEe
Confidence 34456778888888888877777663 4555555666667666 4555666 8999
Q ss_pred CCCC
Q 008199 507 GELD 510 (574)
Q Consensus 507 GeLd 510 (574)
|+.-
T Consensus 132 g~~~ 135 (485)
T 3qne_A 132 TPEN 135 (485)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 9754
No 94
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=63.30 E-value=10 Score=29.86 Aligned_cols=57 Identities=19% Similarity=0.269 Sum_probs=38.8
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCC--CCCceeEEEeeCCChhhhHhHHHH
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNF--RGHSGCAVVEFHKDWPGLHNAMSF 191 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~--~Gh~g~aIV~F~~dw~Gf~nA~~f 191 (574)
++.|-|+|. ..+...|++.|+. |.+ ..+....++ ..+.|+|.|.|.+.- .-..|+.+
T Consensus 8 ~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~a~~~ 67 (89)
T 3ucg_A 8 SIYVGNVDY---------GATAEELEAHFHG--CGSVNRVTILCDKFSGHPKGFAYIEFSDKE-SVRTSLAL 67 (89)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHGG--GCCEEEEEEEESCSSSSCCEEEEEEESSTH-HHHHHGGG
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--CCCEEEEEEEecCCCCCcceEEEEEECCHH-HHHHHHhc
Confidence 567888885 3467889999999 765 445555543 346899999999754 33444433
No 95
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=63.15 E-value=7.7 Score=32.42 Aligned_cols=49 Identities=10% Similarity=0.238 Sum_probs=35.7
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCC--CCCceeEEEeeCCC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNF--RGHSGCAVVEFHKD 181 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~--~Gh~g~aIV~F~~d 181 (574)
.++.|-|+|. ..+...|++.|+. |.+ ..++...++ ..+.|+|.|.|..-
T Consensus 16 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 67 (115)
T 2dgo_A 16 FHVFVGDLSP---------EITTEDIKAAFAP--FGRISDARVVKDMATGKSKGYGFVSFFNK 67 (115)
T ss_dssp EEEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEEcCCCCCcceEEEEEECCH
Confidence 4566889986 3577889999999 765 455555553 34679999999763
No 96
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=63.15 E-value=9.8 Score=30.97 Aligned_cols=56 Identities=25% Similarity=0.331 Sum_probs=37.5
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCCCceeEEEeeCCChhhhHhHHH-HHH
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRGHSGCAVVEFHKDWPGLHNAMS-FEK 193 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~Gh~g~aIV~F~~dw~Gf~nA~~-fe~ 193 (574)
++.|-|+|. ..+...|++.|+. |.+. .+....+ +.|+|.|.|.+.- .-..|+. |+.
T Consensus 2 ~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~---~~g~afV~f~~~~-~a~~A~~~l~g 59 (101)
T 2hvz_A 2 KVYVGNLGT---------GAGKGELERAFSY--YGPLRTVWIARN---PPGFAFVEFEDPR-DAEDAVRGLDG 59 (101)
T ss_dssp EEEEECCCS---------SCSHHHHHHHHHH--HCCCSEEEEESS---SSSEEEEECSSHH-HHHHHHHHHHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEeeC---CCCEEEEEECCHH-HHHHHHHHHCC
Confidence 356788885 4577889999999 7654 3444433 7899999997643 3344444 443
No 97
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.10 E-value=8.5 Score=30.77 Aligned_cols=49 Identities=18% Similarity=0.256 Sum_probs=35.6
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCC--CCceeEEEeeCCC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFR--GHSGCAVVEFHKD 181 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~--Gh~g~aIV~F~~d 181 (574)
.++.|-|+|. ..+...|++.|+. |.++ .+...+++. -++|+|.|.|.+-
T Consensus 16 ~~l~v~nlp~---------~~t~~~l~~~f~~--~G~v~~v~i~~~~~~~~~~g~afV~f~~~ 67 (95)
T 2cqc_A 16 CCLGVFGLSL---------YTTERDLREVFSK--YGPIADVSIVYDQQSRRSRGFAFVYFENV 67 (95)
T ss_dssp GCEEEESCCS---------SCCHHHHHHHHHT--TSCEEEEEEEECSSSSSEEEEEEEEESSH
T ss_pred CEEEEECCCC---------CCCHHHHHHHHHh--cCCeeEEEEEEcCCCCCcccEEEEEECCH
Confidence 3466889986 3467889999999 7654 555555543 4679999999864
No 98
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=62.96 E-value=7.2 Score=32.81 Aligned_cols=50 Identities=12% Similarity=0.120 Sum_probs=36.1
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCC--CCceeEEEeeCCCh
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFR--GHSGCAVVEFHKDW 182 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~--Gh~g~aIV~F~~dw 182 (574)
-.+.|-|+|. ..+...|++.|+. |.+. .+....++. .+.|+|.|.|.+.-
T Consensus 27 ~~l~V~nLp~---------~~te~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~F~~~~ 79 (108)
T 2jrs_A 27 MRLYVGSLHF---------NITEDMLRGIFEP--FGRIESIQLMMDSETGRSKGYGFITFSDSE 79 (108)
T ss_dssp EEEEEECCCS---------SCCHHHHHHHHTT--TSCEEEEEEEEETTTTEEEEEEEEEESCHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEEcCCCCccceEEEEEECCHH
Confidence 4566889986 4578899999999 7654 455555433 45799999998643
No 99
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.88 E-value=5.9 Score=31.59 Aligned_cols=47 Identities=15% Similarity=0.086 Sum_probs=32.9
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCCh
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDW 182 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw 182 (574)
++.|-|+|. ..+...|++.|+. |.+..-..+. ..+.|+|.|.|.+.-
T Consensus 7 ~l~V~nLp~---------~~te~~l~~~F~~--~G~i~~v~i~--~~~~g~afV~f~~~~ 53 (88)
T 1wf0_A 7 GVFVGRCTG---------DMTEDELREFFSQ--YGDVMDVFIP--KPFRAFAFVTFADDQ 53 (88)
T ss_dssp EEEEESCCS---------SSCHHHHHHHSTT--TSCCCEEECC--SSCCSCCEEECSCHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHH--cCCeeEEEEe--cCCCCEEEEEECCHH
Confidence 356788886 3577889999999 7664333332 237889999999843
No 100
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=62.80 E-value=38 Score=27.76 Aligned_cols=53 Identities=19% Similarity=0.337 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 008199 311 SARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIE 363 (574)
Q Consensus 311 ~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~ 363 (574)
.+-+-+++++.+|..||..|.--...|.-|+++|.--....-.+|.-|.-..+
T Consensus 5 ~~~e~~q~ll~EN~~LreAlkqsNq~mkeR~eeL~~wqekQkeErefl~~kf~ 57 (70)
T 3brv_B 5 GAPETLQRCLEENQELRDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQ 57 (70)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45567889999999999999999999999999998777666666666544333
No 101
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.78 E-value=9.5 Score=30.87 Aligned_cols=49 Identities=14% Similarity=0.051 Sum_probs=36.1
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc--ccccccCC--CCCceeEEEeeCCC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT--RVHPLWNF--RGHSGCAVVEFHKD 181 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~--kv~~l~~~--~Gh~g~aIV~F~~d 181 (574)
-++.|-|+|. ..+...|++.|+. |.+. .++...++ ..+.|+|.|.|.+-
T Consensus 10 ~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~~v~i~~~~~~g~~~g~afV~f~~~ 62 (99)
T 2div_A 10 ASLWMGDLEP---------YMDENFISRAFAT--MGETVMSVKIIRNRLTGIPAGYCFVEFADL 62 (99)
T ss_dssp SEEEECSCCT---------TCCHHHHHHHHHH--TTCCCCEEEEEECSSSCCEEEEEEEECSCH
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHH--hCCcceEEEEeecCCCCCcCCEEEEEeCCH
Confidence 4466889886 4577899999999 7763 56666654 34679999999754
No 102
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=62.60 E-value=9.7 Score=32.23 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=41.4
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCChhhhHhHHHH
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDWPGLHNAMSF 191 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~--~Gh~g~aIV~F~~dw~Gf~nA~~f 191 (574)
+.++.|-|+|. ..+...|++.|+. |.++ .++..+++ ..+.|++.|.|.+.-. -..|+.|
T Consensus 36 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~-a~~A~~l 97 (124)
T 2jwn_A 36 KRSVYVGNVDY---------GSTAQDLEAHFSS--CGSINRITILCDKFSGHPKGYAYIEFAERNS-VDAAVAM 97 (124)
T ss_dssp HTEEEEEEECT---------TCCHHHHHHHHHT--TSCEEEEEEEEECTTSSCEEEEEEEESSHHH-HHHHHTT
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEecCCCCCcccEEEEEECCHHH-HHHHHhc
Confidence 45677889986 4577889999999 7654 56666653 3468999999976543 3444433
No 103
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=62.58 E-value=2.8 Score=29.75 Aligned_cols=29 Identities=34% Similarity=0.637 Sum_probs=20.3
Q ss_pred CCCceEeecCCeeeccCCCCCCccccChHHHHhhhhc
Q 008199 29 SGNHSVKISDEAFTCPYCPKKRKQEYLYKDLLQHASG 65 (574)
Q Consensus 29 ~g~~kVk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~g 65 (574)
+|+-+|+ -||-||..+ +.+.+.|+-|-..
T Consensus 3 sgsskik-----qhcrfckkk---ysdvknlikhire 31 (37)
T 2elu_A 3 SGSSGIK-----QHCRFCKKK---YSDVKNLIKHIRD 31 (37)
T ss_dssp SCCCCCC-----CEETTTTEE---CSSHHHHHHHHHH
T ss_pred CchHHHH-----HHHHHHHHH---HHHHHHHHHHHHH
Confidence 3444554 699999733 5579999999644
No 104
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=62.18 E-value=4.4 Score=24.43 Aligned_cols=22 Identities=23% Similarity=0.792 Sum_probs=15.9
Q ss_pred CeeeccCCCCCCccccChHHHHhhh
Q 008199 39 EAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 39 ~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
.+|.|+.|+.. +.....|..|-
T Consensus 2 k~~~C~~C~k~---f~~~~~l~~H~ 23 (27)
T 2kvh_A 2 KPFSCSLCPQR---SRDFSAMTKHL 23 (27)
T ss_dssp CCEECSSSSCE---ESSHHHHHHHH
T ss_pred cCccCCCcChh---hCCHHHHHHHH
Confidence 57999999733 55566777774
No 105
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=61.95 E-value=1e+02 Score=28.70 Aligned_cols=74 Identities=26% Similarity=0.380 Sum_probs=43.8
Q ss_pred HhhhcHHHHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 008199 347 RETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKG 426 (574)
Q Consensus 347 ~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg 426 (574)
+....+..+.+++.|.+. |-.+=.++ |.. .|-.-.++-..+..+.-+|++||..+..+ |.-|.+
T Consensus 73 ~R~~aE~~~~~ie~ElEe-------LTasLFeE--AN~----MVa~ar~~~~~~e~r~~~L~~ql~e~~~~---l~~lq~ 136 (154)
T 2ocy_A 73 LRTKAEEEADKLNKEVED-------LTASLFDE--ANN----MVADARKEKYAIEILNKRLTEQLREKDTL---LDTLTL 136 (154)
T ss_dssp HHHHHHTHHHHHHHHHHH-------HHHHHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 334445556666666554 22333343 443 34455788889999999999999988654 333444
Q ss_pred hhh----hhhccCC
Q 008199 427 SLN----VMKHMGD 436 (574)
Q Consensus 427 ~L~----VmKhm~~ 436 (574)
+|. ||-+|.+
T Consensus 137 ql~~LK~v~~~m~~ 150 (154)
T 2ocy_A 137 QLKNLKKVMHSLDN 150 (154)
T ss_dssp HHHHHHHTTSCCC-
T ss_pred HHHHHHHHHHHhhh
Confidence 444 5555544
No 106
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=61.95 E-value=13 Score=29.97 Aligned_cols=50 Identities=20% Similarity=0.159 Sum_probs=36.0
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCCh
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDW 182 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~--~Gh~g~aIV~F~~dw 182 (574)
-++.|-|+|. ..+...|++.|+. |.+. .+....++ .-+.|+|.|.|.+.-
T Consensus 9 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 61 (99)
T 1whw_A 9 GRLFVRNLSY---------TSSEEDLEKLFSA--YGPLSELHYPIDSLTKKPKGFAFVTFMFPE 61 (99)
T ss_dssp EEEEEECCCT---------TCCHHHHHHHHHT--TSCEEEEECCCCTTTCCCCSEEEEEESSHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCEeEEEEEecCCCCCcCeEEEEEECCHH
Confidence 3567889986 3467889999999 7664 45555554 336799999998743
No 107
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=61.93 E-value=10 Score=32.11 Aligned_cols=50 Identities=14% Similarity=0.299 Sum_probs=36.1
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcc-cccccCC--CCCceeEEEeeCCCh
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTR-VHPLWNF--RGHSGCAVVEFHKDW 182 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~k-v~~l~~~--~Gh~g~aIV~F~~dw 182 (574)
.++.|-|+|. ..+...|.+.|+. |.++. |....++ ..+.|+|.|.|.+.-
T Consensus 23 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 75 (126)
T 3ex7_B 23 WILFVTGVHE---------EATEEDIHDKFAE--YGEIKNIHLNLDRRTGYLKGYTLVEYETYK 75 (126)
T ss_dssp EEEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEECCBCTTTSSBCSCEEEEESSHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEecCCCCccceEEEEEECCHH
Confidence 4677899986 3477889999999 76544 4444443 335899999997653
No 108
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=60.98 E-value=10 Score=32.63 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=35.5
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCC-CceeEEEeeCCCh
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRG-HSGCAVVEFHKDW 182 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~G-h~g~aIV~F~~dw 182 (574)
++.|-|+|. ..+...|++.|+. |.+. .+....++.| +.|+|.|.|.+.-
T Consensus 2 ~l~V~nlp~---------~~t~~~l~~~f~~--~G~i~~v~i~~~~~~~~~g~afV~f~~~~ 52 (166)
T 3md3_A 2 VLYVGNLDK---------AITEDILKQYFQV--GGPIANIKIMIDKNNKNVNYAFVEYHQSH 52 (166)
T ss_dssp EEEEEEEET---------TCCHHHHHHHHGG--GSCEEEEEEECCCC-CCEEEEEEEESSHH
T ss_pred EEEECCCCC---------cCCHHHHHHHHHh--cCCeEEEEEEECCCCCCCCEEEEEeCCHH
Confidence 356888886 3467889999999 7654 4666666544 6799999997643
No 109
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=60.97 E-value=8.3 Score=32.17 Aligned_cols=50 Identities=16% Similarity=0.186 Sum_probs=36.4
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCC---cccccccCCC--CCceeEEEeeCCChh
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP---TRVHPLWNFR--GHSGCAVVEFHKDWP 183 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p---~kv~~l~~~~--Gh~g~aIV~F~~dw~ 183 (574)
+++|-|+|. -.+...|++.|+. |.+ ..|+...++. -++|++.|.|.+--.
T Consensus 11 tlfV~nL~~---------~~tee~L~~~F~~--~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~ 65 (95)
T 2lkz_A 11 TIILRNIAP---------HTVVDSIMTALSP--YASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMD 65 (95)
T ss_dssp EEEEESCCT---------TCCHHHHHHHSTT--TCCCCGGGEECCCCSSSSSCSSEEEEECSSSHH
T ss_pred EEEEeCCCC---------cCCHHHHHHHHHh--hCCccEEEEEEEecCCCCCCceEeEEEECCHHH
Confidence 367889986 3477899999999 764 3555555543 357999999987553
No 110
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=60.95 E-value=9.1 Score=37.02 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=42.6
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCCCceeEEEeeCCChhhhHhHHHH
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSF 191 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~Gh~g~aIV~F~~dw~Gf~nA~~f 191 (574)
-++.|-|+|. ..+...|.+.|+. |.+ ..++...+..|..|+|.|.|.+ ...-..|+.+
T Consensus 42 ~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~g~afV~f~~-~~~A~~A~~~ 100 (292)
T 2ghp_A 42 TTVLVKNLPK---------SYNQNKVYKYFKH--CGPIIHVDVADSLKKNFRFARIEFAR-YDGALAAITK 100 (292)
T ss_dssp CEEEEEEECT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTSSSEEEEEEESS-HHHHHHHHTT
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEECCCCCcEEEEEEECC-HHHHHHHHHh
Confidence 3567899996 4577889999999 755 5566667778889999999985 3444455543
No 111
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=60.94 E-value=7.5 Score=37.48 Aligned_cols=52 Identities=25% Similarity=0.302 Sum_probs=39.1
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCC-CceeEEEeeCCChhh
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRG-HSGCAVVEFHKDWPG 184 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~G-h~g~aIV~F~~dw~G 184 (574)
.++.|-|+|. ..+...|++.|+. |.+ ..|..+.+..| ++|++.|.|.+.-..
T Consensus 97 ~~l~v~nl~~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A 150 (261)
T 3sde_A 97 AALTVKNLSP---------VVSNELLEQAFSQ--FGPVEKAVVVVDDRGRATGKGFVEFAAKPPA 150 (261)
T ss_dssp SEEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEEETTSCEEEEEEEEESSHHHH
T ss_pred CcccccCCCC---------CCCHHHHHHHHHh--cCCeEEEEeeeCCCCCcCcEEEEEeCCHHHH
Confidence 3577889986 3467899999999 765 46666666666 589999999875444
No 112
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=60.94 E-value=9 Score=30.08 Aligned_cols=49 Identities=22% Similarity=0.145 Sum_probs=32.5
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhc----CC------CCcccccccCCCCCceeEEEeeCCCh
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRR----GF------NPTRVHPLWNFRGHSGCAVVEFHKDW 182 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~----GF------~p~kv~~l~~~~Gh~g~aIV~F~~dw 182 (574)
+.++.|-|+|. ..+...|++.|+.- |+ ....++... ..|+|.|.|.+--
T Consensus 6 ~~~l~V~nLp~---------~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~----~kg~afV~f~~~~ 64 (87)
T 2hzc_A 6 ARRLYVGNIPF---------GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ----DKNFAFLEFRSVD 64 (87)
T ss_dssp GGEEEEESCCT---------TCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS----SSSEEEEEESSHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC----CCcEEEEEcCCHH
Confidence 45677889986 45778999999993 32 222333322 2789999998643
No 113
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=60.90 E-value=89 Score=27.62 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=17.2
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhhh
Q 008199 405 IQLEKQLDAKQALALEIERLKGSL 428 (574)
Q Consensus 405 ~~LekqL~~kQ~LELEi~qLkg~L 428 (574)
.+.+.=|+-|-.|+.||.--+.-|
T Consensus 103 ~EYq~LlnvKl~Ld~EIatYRkLL 126 (129)
T 3tnu_B 103 REYQELMNTKLALDVEIATYRKLL 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344455788899999998766554
No 114
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=60.66 E-value=11 Score=29.60 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=39.1
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCC--CCceeEEEeeCCChhhhHhHHH
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFR--GHSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~--Gh~g~aIV~F~~dw~Gf~nA~~ 190 (574)
+-.+.|-|+|. ..+...|++.|+. |.+ ..++...++. -+.|++.|.|.+.-. -..|+.
T Consensus 11 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~-a~~A~~ 71 (87)
T 3s7r_A 11 AGKMFVGGLSW---------DTSKKDLKDYFTK--FGEVVDCTIKMDPNTGRSRGFGFILFKDAAS-VEKVLD 71 (87)
T ss_dssp TTEEEEECCCT---------TCCHHHHHHHHTT--TSCEEEEEEEECTTTCCEEEEEEEEESSTHH-HHHHHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--CCCEEEEEEeecCCCCccccEEEEEECCHHH-HHHHHH
Confidence 34567889986 3477889999999 765 4555555533 357999999986543 233443
No 115
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=60.18 E-value=1.8e+02 Score=31.59 Aligned_cols=106 Identities=12% Similarity=0.186 Sum_probs=57.6
Q ss_pred ccCCCCCCCcchhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHH---HHHH
Q 008199 221 RSDDYNLKNIIGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEE---KDRL 297 (574)
Q Consensus 221 radD~~~~~~iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meE---k~~l 297 (574)
.-+|+...=|-|= .| .++..+..|.-..-|..|+|.|..-.+.-...-.-.+.++..|+....+ ++..
T Consensus 38 aDeDwGvkCPSGC------rL---qglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~ 108 (491)
T 1m1j_A 38 VDDDWGTKCPSGC------RM---QGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDEN 108 (491)
T ss_dssp CTTSTTTEECCST------TH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCcc------ch---hhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhH
Confidence 5566655434442 32 3455566666666666666666665555555555555555555555533 5666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 008199 298 LQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKK 335 (574)
Q Consensus 298 ~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~~ 335 (574)
..+|.++++.-+---.+-+..-|.--.-|+.-|+.+..
T Consensus 109 ~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~s 146 (491)
T 1m1j_A 109 YGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVV 146 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777665554444444444333444555554444
No 116
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=60.17 E-value=8 Score=31.06 Aligned_cols=55 Identities=13% Similarity=0.092 Sum_probs=36.1
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCC---CcccccccCC--CCCceeEEEeeCCChhhhHhHH
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFN---PTRVHPLWNF--RGHSGCAVVEFHKDWPGLHNAM 189 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~---p~kv~~l~~~--~Gh~g~aIV~F~~dw~Gf~nA~ 189 (574)
++.|-|++. ..+...|++.|+. |. ...++...++ .-+.|++.|.|.+. ..-..|+
T Consensus 3 ~l~V~nL~~---------~~t~~~l~~~F~~--~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~-~~a~~Ai 62 (90)
T 3p5t_L 3 ALYIGNLTW---------WTTDEDLTEAVHS--LGVNDILEIKFFENRANGQSKGFALVGVGSE-ASSKKLM 62 (90)
T ss_dssp -CEEESCCT---------TCCHHHHHHHHHT--TTCCCCCCEEEEECTTTCCEEEEEEECC-CH-HHHHHHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHH--hCCCceEEEEEEecCCCCccCcEEEEEECCH-HHHHHHH
Confidence 456778885 3467889999999 65 4555555553 24689999999753 3344444
No 117
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=60.08 E-value=5 Score=32.36 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=33.4
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCCh
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDW 182 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw 182 (574)
++.|-|+|. ..+...|++.|+. |....+ +.....+.|+|.|.|.+.-
T Consensus 18 ~l~V~nL~~---------~~t~~~l~~~F~~--~g~v~~--~~~~~~~~g~afV~f~~~~ 64 (96)
T 1fjc_A 18 TLLAKNLSF---------NITEDELKEVFED--ALEIRL--VSQDGKSKGIAYIEFKSEA 64 (96)
T ss_dssp EEEEESCCS---------SCCHHHHHHHHCS--EEEECC--EEETTEEEEEEEEEESSHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHhh--CCcEEE--eCCCCCcceEEEEEECCHH
Confidence 466889886 4577889999988 754443 3334456899999998643
No 118
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.05 E-value=7.5 Score=31.95 Aligned_cols=58 Identities=10% Similarity=0.094 Sum_probs=39.6
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCChhhhHhHHHH
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDWPGLHNAMSF 191 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~--~Gh~g~aIV~F~~dw~Gf~nA~~f 191 (574)
..+.|-|+|. ..+...|++.|+. |.++ .++...++ .-+.|+|.|.|.+. ..-..|+..
T Consensus 17 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~v~~v~i~~~~~~g~~~g~afV~f~~~-~~a~~a~~~ 77 (105)
T 2dh8_A 17 GKLFVGGLDW---------STTQETLRSYFSQ--YGEVVDCVIMKDKTTNQSRGFGFVKFKDP-NCVGTVLAS 77 (105)
T ss_dssp SEECCBSCCT---------TCCHHHHHHHHHT--TSCEEEEEEEECSSSCCEEEEEEEEESST-THHHHHHHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEeeCCCCCCcceEEEEEECCH-HHHHHHHHh
Confidence 4566889986 3477889999999 7654 55555553 24679999999864 334444443
No 119
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=59.97 E-value=12 Score=30.36 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=35.4
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChhhhHhHHH
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw~Gf~nA~~ 190 (574)
.++.|-|+|. ..+...|++.|+. |.++.-..+. .+ .|+|.|.|.+. ..-..|+.
T Consensus 18 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~v~~v~~~--~~-~g~afV~f~~~-~~A~~A~~ 71 (97)
T 1why_A 18 TRLWVGGLGP---------NTSLAALAREFDR--FGSIRTIDHV--KG-DSFAYIQYESL-DAAQAACA 71 (97)
T ss_dssp SCEEEECCCS---------SCCHHHHHHHHHT--TSCEEEEEEC--SS-SCCEEEEESSH-HHHHHHHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeeEEEEe--CC-CCEEEEEECCH-HHHHHHHH
Confidence 3566889986 3477899999999 7764333322 22 78999999764 33344443
No 120
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.67 E-value=5 Score=25.80 Aligned_cols=24 Identities=25% Similarity=0.564 Sum_probs=17.0
Q ss_pred cCCeeeccCCCCCCccccChHHHHhhh
Q 008199 37 SDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 37 ~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
...+|.|+.|+.. +.....|..|-
T Consensus 6 ~~k~~~C~~C~k~---f~~~~~l~~H~ 29 (36)
T 2elt_A 6 SGKPYKCPQCSYA---SAIKANLNVHL 29 (36)
T ss_dssp CCCSEECSSSSCE---ESSHHHHHHHH
T ss_pred CCCCCCCCCCCcc---cCCHHHHHHHH
Confidence 4568999999733 45556677774
No 121
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.58 E-value=9.1 Score=31.19 Aligned_cols=49 Identities=18% Similarity=0.311 Sum_probs=35.7
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCC--CCCceeEEEeeCCCh
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNF--RGHSGCAVVEFHKDW 182 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~--~Gh~g~aIV~F~~dw 182 (574)
++.|-|+|. ..+...|++.|+. |.+ ..++..+++ .-+.|+|.|.|.+.-
T Consensus 10 ~l~V~nlp~---------~~~~~~l~~~f~~--~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 61 (104)
T 1p1t_A 10 SVFVGNIPY---------EATEEQLKDIFSE--VGPVVSFRLVYDRETGKPKGYGFCEYQDQE 61 (104)
T ss_dssp CEEEESCCT---------TSCHHHHHHHHHT--TSCCSEEEEEEETTTTEEEEEEEEECSCHH
T ss_pred EEEEeCCCC---------cCCHHHHHHHHHh--cCCeeEEEEEeCCCCCccceEEEEEECCHH
Confidence 467889886 4577899999999 765 455556553 235799999998643
No 122
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.52 E-value=9.6 Score=31.04 Aligned_cols=48 Identities=21% Similarity=0.030 Sum_probs=36.0
Q ss_pred eEEEeeccccccCCCcccccCchhHH----HHHHhcCCCC-cccccccCCCCCceeEEEeeCCCh
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLR----DELIRRGFNP-TRVHPLWNFRGHSGCAVVEFHKDW 182 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~----~~l~~~GF~p-~kv~~l~~~~Gh~g~aIV~F~~dw 182 (574)
.+.|-|+|. ..+...|+ +.|+. |.+ ..|+...++.+ .|++.|.|.+.-
T Consensus 11 ~l~V~nL~~---------~~~~~~l~~~l~~~F~~--~G~v~~v~i~~~~~~-rg~afV~f~~~~ 63 (96)
T 2dgx_A 11 DVQVSNIDY---------RLSRKELQQLLQEAFAR--HGKVKSVELSPHTDY-QLKAVVQMENLQ 63 (96)
T ss_dssp EEEEESCCT---------TSCHHHHHHHHHHHHHH--HSCEEEEEECSCCST-TCCEEEEESSHH
T ss_pred EEEEECCCC---------CCCHHHHHHHHHHhccc--cCcEEEEEEEeCCCC-CeEEEEEECCHH
Confidence 466889986 34667788 99999 765 55666666667 899999997643
No 123
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.46 E-value=20 Score=29.69 Aligned_cols=50 Identities=18% Similarity=0.279 Sum_probs=36.7
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCC-CceeEEEeeCCC
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRG-HSGCAVVEFHKD 181 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~G-h~g~aIV~F~~d 181 (574)
|-++.|-|+|. ..+...|++.|+. |.+ ..++...++.| +.|++.|.|.+.
T Consensus 25 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~~~i~~~~~g~~~g~afV~f~~~ 76 (114)
T 1x5o_A 25 PTNLYISNLPL---------SMDEQELENMLKP--FGQVISTRILRDSSGTSRGVGFARMEST 76 (114)
T ss_dssp TTEEEEESCCT---------TCCHHHHHHTTTT--TSCEEEEEEEECSSSCEEEEEEEEESCH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEECCCCCcceEEEEEECCH
Confidence 45677889986 3477889999998 754 45555666544 579999999863
No 124
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=58.87 E-value=8.1 Score=30.73 Aligned_cols=49 Identities=14% Similarity=0.262 Sum_probs=35.4
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCC--CCCceeEEEeeCCCh
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNF--RGHSGCAVVEFHKDW 182 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~--~Gh~g~aIV~F~~dw 182 (574)
.+.|-|+|. ..+...|++.|+. |.+ ..+....++ ..+.|+|.|.|.+.-
T Consensus 3 ~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 54 (90)
T 2ki2_A 3 NIYVGNLVY---------SATSEQVKELFSQ--FGKVFNVKLIYDRETKKPKGFGFVEMQEES 54 (90)
T ss_dssp EEEEEEECT---------TSSHHHHTTTHHH--HTCCSEEEECCCSSSCCCCEEEEEEECTTH
T ss_pred EEEECCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEEcCCCCCcceEEEEEECCHH
Confidence 356788886 3467889999999 755 455555554 346899999998754
No 125
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=58.86 E-value=11 Score=30.91 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=37.9
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCChhhhHhHH
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDWPGLHNAM 189 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~--~Gh~g~aIV~F~~dw~Gf~nA~ 189 (574)
-.+.|-|+|. ..+...|++.|+. |.++ .++...++ .-+.|+|.|.|..- ..-..|+
T Consensus 16 ~~l~v~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~-~~a~~A~ 74 (103)
T 2cqg_A 16 SDLIVLGLPW---------KTTEQDLKEYFST--FGEVLMVQVKKDLKTGHSKGFGFVRFTEY-ETQVKVM 74 (103)
T ss_dssp CCEEEESCCS---------SCCHHHHHHHHGG--GSCEEEEEEEECSSSCSEEEEEEEEESSH-HHHHHHH
T ss_pred CEEEEEcCCC---------cCCHHHHHHHHHh--cCCeEEEEEEecCCCCCccceEEEEECCH-HHHHHHH
Confidence 3466889986 3467889999999 7664 55555554 34579999999753 3333444
No 126
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.72 E-value=5.3 Score=25.85 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=17.5
Q ss_pred cCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 37 SDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 37 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+..+|.|+.|+.. +.....|..|..
T Consensus 6 ~~k~~~C~~C~k~---f~~~~~l~~H~~ 30 (36)
T 2els_A 6 SGKIFTCEYCNKV---FKFKHSLQAHLR 30 (36)
T ss_dssp CCCCEECTTTCCE---ESSHHHHHHHHH
T ss_pred CCCCEECCCCCce---eCCHHHHHHHHH
Confidence 4578999999733 455666777753
No 127
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.58 E-value=5.7 Score=25.52 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=18.2
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
....+|.|+.|+.. +.....|..|-.
T Consensus 5 ~~~~~~~C~~C~k~---f~~~~~l~~H~~ 30 (36)
T 2elr_A 5 SSGKTHLCDMCGKK---FKSKGTLKSHKL 30 (36)
T ss_dssp CCCSSCBCTTTCCB---CSSHHHHHHHHH
T ss_pred CCCCCeecCcCCCC---cCchHHHHHHHH
Confidence 35678999999743 555667777743
No 128
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=58.31 E-value=9 Score=32.60 Aligned_cols=42 Identities=17% Similarity=0.301 Sum_probs=33.2
Q ss_pred EeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCC
Q 008199 126 VVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKD 181 (574)
Q Consensus 126 i~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~d 181 (574)
|-|++. -.+...|++.|.. |.|+.-..+.- |+||+.|+|...
T Consensus 12 VgNL~~---------~~te~~L~~lF~q--~G~V~~~~l~~---~kGfaFVey~~~ 53 (89)
T 2wbr_A 12 LKNLTA---------QIDGPTLRTLCMQ--HGPLVSFHPYL---NQGIALCKYTTR 53 (89)
T ss_dssp EECCCT---------TCCCHHHHHHHHH--HSCEEEEEEET---TTTEEEEEESSH
T ss_pred EeCCCc---------cCCHHHHHHHHHh--hCCEEEEEEcC---CCcEEEEEECCH
Confidence 678875 2466899999999 88877766643 789999999875
No 129
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=57.63 E-value=13 Score=29.00 Aligned_cols=50 Identities=22% Similarity=0.258 Sum_probs=34.9
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCC--CCceeEEEeeCCCh
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFR--GHSGCAVVEFHKDW 182 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~--Gh~g~aIV~F~~dw 182 (574)
.++.|-|+|. ..+...|++.|+. |.+ ..+....++. .+.|+|.|.|.+.-
T Consensus 8 ~~l~V~nl~~---------~~~~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 60 (85)
T 3mdf_A 8 RVLYVGGLAE---------EVDDKVLHAAFIP--FGDITDIQIPLDYETEKHRGFAFVEFELAE 60 (85)
T ss_dssp SEEEEECCCT---------TCCHHHHHHHHGG--GSCEEEEECCEETTTTEECSEEEEEESSHH
T ss_pred CEEEEECCCC---------CCCHHHHHHHHhc--cCCEEEEEEEECCCCCccccEEEEEECCHH
Confidence 3566889886 3467899999999 765 3444444422 36899999998643
No 130
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.61 E-value=6.2 Score=32.31 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=36.0
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCCh
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDW 182 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~--~Gh~g~aIV~F~~dw 182 (574)
.++.|-|+|. ..+...|++.|+. |.++ .+....++ ..+.|+|.|.|.+.-
T Consensus 16 ~~l~V~nlp~---------~~t~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 68 (103)
T 2cq0_A 16 ATIRVTNLSE---------DTRETDLQELFRP--FGSISRIYLAKDKTTGQSKGFAFISFHRRE 68 (103)
T ss_dssp EEEEEESCCT---------TCCHHHHHTTSTT--TCCEEEEEEEECSSSCSEEEEEEEEESSHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--CCCeEEEEEeecCCCCceeeEEEEEECCHH
Confidence 4567889986 3477889999998 7654 55555553 346799999998643
No 131
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=57.51 E-value=11 Score=33.41 Aligned_cols=51 Identities=12% Similarity=0.034 Sum_probs=37.6
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCC--CCceeEEEeeCCCh
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFR--GHSGCAVVEFHKDW 182 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~--Gh~g~aIV~F~~dw 182 (574)
+.++.|-|+|. ..+...|++.|+. |.+ ..|....++. -+.|+|.|.|.+.-
T Consensus 39 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 92 (156)
T 1h2v_Z 39 SCTLYVGNLSF---------YTTEEQIYELFSK--SGDIKKIIMGLDKMKKTACGFCFVEYYSRA 92 (156)
T ss_dssp CCEEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEecCCCCccceEEEEEECCHH
Confidence 45677899986 4467889999999 765 4566666543 35799999998643
No 132
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.43 E-value=8.7 Score=30.18 Aligned_cols=56 Identities=11% Similarity=0.176 Sum_probs=37.7
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCChhhhHhHHH
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~--~Gh~g~aIV~F~~dw~Gf~nA~~ 190 (574)
++.|-|+|. ..+...|++.|+. |.+. .+....++ ..+.|++.|.|.+-- .-..|++
T Consensus 7 ~l~v~nlp~---------~~t~~~l~~~f~~--~G~i~~~~i~~~~~~~~~~g~afV~f~~~~-~a~~A~~ 65 (85)
T 1x4e_A 7 GLYIRGLQP---------GTTDQDLVKLCQP--YGKIVSTKAILDKTTNKCKGYGFVDFDSPS-AAQKAVT 65 (85)
T ss_dssp EEEEESCCT---------TCCHHHHHTTSTT--TSCEEEEEEECCSSSCSCCSEEEEEESCHH-HHHHHHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEecCCCCCcCcEEEEEECCHH-HHHHHHH
Confidence 566889886 4567889999998 7654 44444443 346899999998643 3344444
No 133
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=57.27 E-value=6 Score=23.82 Aligned_cols=23 Identities=17% Similarity=0.476 Sum_probs=16.5
Q ss_pred CeeeccCCCCCCccccChHHHHhhhh
Q 008199 39 EAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 39 ~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
.+|.|+.|+.. +.....|..|-.
T Consensus 2 k~~~C~~C~~~---f~~~~~l~~H~~ 24 (30)
T 2m0d_A 2 KPYQCDYCGRS---FSDPTSKMRHLE 24 (30)
T ss_dssp CCEECTTTCCE---ESCHHHHHHHHH
T ss_pred cCccCCCCCcc---cCCHHHHHHHHH
Confidence 57999999743 455667778853
No 134
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.09 E-value=13 Score=29.70 Aligned_cols=42 Identities=10% Similarity=0.192 Sum_probs=31.2
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCC
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHK 180 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~ 180 (574)
++.|-|+|. ..+...|++.|+. |.+.....+. .|++.|.|.+
T Consensus 10 ~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~~~-----~g~afV~f~~ 51 (90)
T 2dnq_A 10 KLFIGNLPR---------EATEQEIRSLFEQ--YGKVLECDII-----KNYGFVHIED 51 (90)
T ss_dssp EEEEESCCS---------SCCHHHHHHHHHT--SSCEEEEEEE-----TTEEEEEESS
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--CCCEEEEEEE-----CCEEEEEECC
Confidence 466889986 4577889999999 7664433332 6799999986
No 135
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=56.92 E-value=15 Score=30.41 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=35.4
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCC--CCceeEEEeeCCC
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFR--GHSGCAVVEFHKD 181 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~--Gh~g~aIV~F~~d 181 (574)
.+.|-|+|. ..+...|++.|+. |.++ .++...++. -+.|+|.|.|.+.
T Consensus 21 ~lfV~nLp~---------~~te~~L~~~F~~--~G~I~~v~i~~d~~tg~~kG~afV~f~~~ 71 (99)
T 4fxv_A 21 NLIVNYLPQ---------NMTQDELRSLFSS--IGEVESAKLIRDKVAGHSLGYGFVNYVTA 71 (99)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEEEEECSSSCCEEEEEEEEESSH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEeEeeecCCCCcccccEEEEECCH
Confidence 466889996 4577899999999 8664 455555443 4679999999864
No 136
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=56.54 E-value=16 Score=30.99 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=35.9
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCC-CceeEEEeeCCC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRG-HSGCAVVEFHKD 181 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~G-h~g~aIV~F~~d 181 (574)
-++.|-|+|. ..+...|++.|+. |.+ ..+....+..| +.|+|.|.|.+.
T Consensus 8 ~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~g~~~g~afV~F~~~ 58 (116)
T 2fy1_A 8 GKLFIGGLNR---------ETNEKMLKAVFGK--HGPISEVLLIKDRTSKSRGFAFITFENP 58 (116)
T ss_dssp CEEEEECCTT---------TCCHHHHHHHHHT--SSCCSEEEEECSTTTTCCCEEEEECSSH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEECCCCCcccEEEEEECCH
Confidence 3566889986 3577889999999 765 45555555544 569999999763
No 137
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.41 E-value=6.1 Score=25.70 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=17.2
Q ss_pred ecCCeeeccCCCCCCccccCh-HHHHhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLY-KDLLQHA 63 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~-~~LLqHA 63 (574)
....+|.|+.|+.. +..- ..|..|-
T Consensus 5 ~~~k~~~C~~C~k~---f~~~~~~L~~H~ 30 (37)
T 2elp_A 5 SSGRAMKCPYCDFY---FMKNGSDLQRHI 30 (37)
T ss_dssp CCCCCEECSSSSCE---ECSSCHHHHHHH
T ss_pred CCCCCeECCCCChh---hccCHHHHHHHH
Confidence 35678999999743 4444 6777774
No 138
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.18 E-value=15 Score=29.88 Aligned_cols=46 Identities=20% Similarity=0.191 Sum_probs=33.3
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKD 181 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~d 181 (574)
-++.|-|+|. ..+...|++.|+. |.+..|..+.-. +|+|.|.|.+.
T Consensus 16 ~~l~V~nLp~---------~~t~~~l~~~F~~--~g~g~v~~~~~~---~g~afV~f~~~ 61 (99)
T 2cpd_A 16 KILYVRNLML---------STSEEMIEKEFNN--IKPGAVERVKKI---RDYAFVHFSNR 61 (99)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHHHT--TSTTCEEEEEEC---SSEEEEEESSH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCcceEEEEEe---CCeEEEEeCCH
Confidence 3566889986 3577889999999 755555555433 56999999763
No 139
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=56.11 E-value=16 Score=34.25 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=41.6
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCC---cccccccCCCCCceeEEEeeCCChhhhHhHHHHHHHhh
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP---TRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKAYE 196 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p---~kv~~l~~~~Gh~g~aIV~F~~dw~Gf~nA~~fe~~Fe 196 (574)
++.|-|+|. ..+...|++.|+. |.+ ..|+.+....+.+|++.|.|.+ ..-=..|+.-=+.+.
T Consensus 125 ~l~v~NLp~---------~~t~~~L~~~F~~--~G~v~~~~v~~~~~~~~~~g~gfV~f~~-~~~A~~Ai~~lng~~ 189 (205)
T 3tyt_A 125 VLHFFNAPL---------EVTEENFFEICDE--LGVKRPTSVKVFSGKSERSSSGLLEWDS-KSDALETLGFLNHYQ 189 (205)
T ss_dssp EEEEEEECT---------TCCHHHHHHHHHH--HTCCCCSEEEECSCCSSSSEEEEEECSS-HHHHHHHHHHHTTCE
T ss_pred eEEEeCCCC---------CCCHHHHHHHHHh--cCCcceEEEEEEcCCCCCceEEEEEeCC-HHHHHHHHHHhCCCC
Confidence 466789986 4577899999999 665 4566655554567999999985 333344544333333
No 140
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=56.10 E-value=10 Score=31.76 Aligned_cols=51 Identities=10% Similarity=0.129 Sum_probs=36.2
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCC--CCCceeEEEeeCCChh
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNF--RGHSGCAVVEFHKDWP 183 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~--~Gh~g~aIV~F~~dw~ 183 (574)
.++.|-|+|. ..+...|++.|+. |.+ ..++...++ ..+.|++.|.|.+.-.
T Consensus 41 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 94 (118)
T 2khc_A 41 CNLFIYHLPQ---------EFTDTDLASTFLP--FGNVISAKVFIDKQTSLSKCFGFVSFDNPDS 94 (118)
T ss_dssp EEEEEECSCT---------TCCHHHHHHHTTT--SCEEEEEEECCCSSSSCCCCEEEEEEESSHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEeCCCCCCcCcEEEEEECCHHH
Confidence 4567889986 3467889999999 765 344555443 3468999999987543
No 141
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=56.07 E-value=13 Score=31.15 Aligned_cols=49 Identities=8% Similarity=0.104 Sum_probs=35.8
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCC--CCCceeEEEeeCCC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNF--RGHSGCAVVEFHKD 181 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~--~Gh~g~aIV~F~~d 181 (574)
..+.|-|+|. ..+...|++.|+. |.+ ..++...++ .-+.|++.|.|...
T Consensus 26 ~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 77 (115)
T 2cpz_A 26 ANLFIYHLPQ---------EFGDQDLLQMFMP--FGNVVSAKVFIDKQTNLSKCFGFVSYDNP 77 (115)
T ss_dssp CCEEEESCCS---------SCCHHHHHHHHGG--GSCCSEEEEEECSSSCSEEEEEEEECSSH
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEECCCCCCcCccEEEEECCH
Confidence 4567889986 3467889999999 765 455555554 34679999999853
No 142
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=56.04 E-value=6.4 Score=24.98 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=17.6
Q ss_pred cCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 37 SDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 37 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+..+|.|+.|+.. +.....|..|-.
T Consensus 4 ~~k~~~C~~C~k~---f~~~~~L~~H~~ 28 (35)
T 2elx_A 4 GSSGYVCALCLKK---FVSSIRLRSHIR 28 (35)
T ss_dssp CCCSEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCCeECCCCcch---hCCHHHHHHHHH
Confidence 4678999999743 455566777754
No 143
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=55.96 E-value=13 Score=35.99 Aligned_cols=52 Identities=13% Similarity=0.039 Sum_probs=34.9
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCC-CceeEEEeeCCC
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRG-HSGCAVVEFHKD 181 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~G-h~g~aIV~F~~d 181 (574)
+.++.|-|+|. ..+...|.+.|+.-|+....+.......| +.|++.|.|.+.
T Consensus 117 ~~~l~v~nlp~---------~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~ 169 (292)
T 2ghp_A 117 ECTLWMTNFPP---------SYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSK 169 (292)
T ss_dssp SCEEEEECCCT---------TCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSH
T ss_pred CCEEEEECCCC---------CCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCH
Confidence 45677889986 34678899999994444566666665544 789999999764
No 144
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.89 E-value=12 Score=30.97 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=33.7
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCCCceeEEEeeCCCh
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRGHSGCAVVEFHKDW 182 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~Gh~g~aIV~F~~dw 182 (574)
-++.|-|+|. ..+...|++.|+. |.++ .++...+ .|+|.|.|...-
T Consensus 26 ~~l~V~nl~~---------~~t~~~l~~~F~~--~G~i~~v~i~~~----~g~afV~f~~~~ 72 (109)
T 1x4g_A 26 CTVYCGGIAS---------GLTDQLMRQTFSP--FGQIMEIRVFPE----KGYSFVRFSTHE 72 (109)
T ss_dssp CEEEEECCSS---------CCCHHHHHHHHHH--HSCEEEEEEETT----TTEEEEEESSHH
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEeCC----CCEEEEEECCHH
Confidence 4567899986 4578899999999 7654 4444433 789999998744
No 145
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=55.88 E-value=12 Score=32.62 Aligned_cols=49 Identities=20% Similarity=0.307 Sum_probs=36.5
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCC----CceeEEEeeCCCh
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRG----HSGCAVVEFHKDW 182 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~G----h~g~aIV~F~~dw 182 (574)
++.|-|+|. ..+...|++.|+. |.+ ..++...++.+ +.|+|.|.|.+.-
T Consensus 5 ~l~V~nLp~---------~~te~~l~~~F~~--~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~ 58 (175)
T 3nmr_A 5 KMFVGQVPR---------TWSEKDLRELFEQ--YGAVYEINVLRDRSQNPPQSKGCCFVTFYTRK 58 (175)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEEEEEECSSSSCEEEEEEEEEESSHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--CCCEEEEEEEecCCCCCCCcceEEEEEECCHH
Confidence 356788886 3577889999999 765 45556666554 6899999998754
No 146
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.87 E-value=7.6 Score=31.64 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=32.8
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCC--CCCceeEEEeeCC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNF--RGHSGCAVVEFHK 180 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~--~Gh~g~aIV~F~~ 180 (574)
.++.|-|+|. ..+...|++.|+. | ..+..+... ..+.|+|.|.|.+
T Consensus 16 ~~l~V~nLp~---------~~t~~~l~~~F~~--~--~~~~~~~~~~~~~~~g~afV~f~~ 63 (102)
T 2fc8_A 16 KTLFVKGLSE---------DTTEETLKESFDG--S--VRARIVTDRETGSSKGFGFVDFNS 63 (102)
T ss_dssp SSEEEECCCT---------TCCHHHHHHTSTT--C--SEEEEEECSSSCSEEEEEEEECSS
T ss_pred CEEEEeCCCC---------ccCHHHHHHHhcC--C--eEEEEEecCCCCCcCcEEEEEECC
Confidence 3456889986 3467889998886 7 355555543 3467999999985
No 147
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=55.75 E-value=14 Score=32.53 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=33.5
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCCCceeEEEeeCCCh
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRGHSGCAVVEFHKDW 182 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~Gh~g~aIV~F~~dw 182 (574)
-++.|-|+|. ..+...|++.|+. |.++ .++... ++.|++.|.|.+.-
T Consensus 74 ~~l~V~nl~~---------~~t~~~l~~~F~~--~G~i~~v~i~~---~~~g~afV~f~~~~ 121 (150)
T 2i2y_A 74 CKVYVGNLGN---------NGNKTELERAFGY--YGPLRSVWVAR---NPPGFAFVEFEDPR 121 (150)
T ss_dssp CEEEEESCCS---------CCSCHHHHHHHHH--HSCEEEEEECS---SSCSEEEEEESSHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--hCCEEEEEEee---CCCcEEEEEECCHH
Confidence 4566889986 4467889999999 7654 333333 37899999997643
No 148
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=55.48 E-value=19 Score=31.29 Aligned_cols=57 Identities=7% Similarity=0.082 Sum_probs=39.2
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCChhhhHhHH
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDWPGLHNAM 189 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~--~Gh~g~aIV~F~~dw~Gf~nA~ 189 (574)
+..+.|-|+|. ..+...|++.|+. |.+. .++...++ ..++|++.|.|.+. ..-..|+
T Consensus 87 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~~~i~~~~~~g~~~g~afV~f~~~-~~a~~A~ 146 (167)
T 2cjk_A 87 TGKIFVGGIGP---------DVRPKEFEEFFSQ--WGTIIDAQLMLDKDTGQSRGFGFVTYDSA-DAVDRVC 146 (167)
T ss_dssp CEEEEEEEECT---------TCCHHHHHHHHHT--TSCCSEEECCCSSSSSTTSEEEEEEESSH-HHHHHHH
T ss_pred CCeEEECCCCC---------CCCHHHHHHHHHh--CccEEEEEEEEcCCCCccceEEEEEECCH-HHHHHHH
Confidence 34677889986 3467889999999 7654 55555553 34779999999763 3333343
No 149
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.46 E-value=13 Score=31.17 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=38.9
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCC--CCceeEEEeeCCChhhhHhHHH
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFR--GHSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~--Gh~g~aIV~F~~dw~Gf~nA~~ 190 (574)
-++.|-|+|. ..+...|++.|+. |.+ ..++...++. .+.|+|.|.|.. -..-..|+.
T Consensus 28 ~~l~V~nLp~---------~~te~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~Ai~ 87 (116)
T 1x4b_A 28 RKLFIGGLSF---------ETTEESLRNYYEQ--WGKLTDCVVMRDPASKRSRGFGFVTFSS-MAEVDAAMA 87 (116)
T ss_dssp TEEEEECCTT---------CCCHHHHHHHHTS--SCCCSEEEEECCTTTSSCCSEEEEECSS-HHHHHHHHT
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEECCCCCCcCceEEEEeCC-HHHHHHHHH
Confidence 5677889986 3467889999999 765 4555555533 467999999975 333344443
No 150
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=55.34 E-value=15 Score=30.96 Aligned_cols=48 Identities=21% Similarity=0.247 Sum_probs=34.1
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChh
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWP 183 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw~ 183 (574)
.++.|-|+|. ..+...|++.|+. |.+..-..+- -..|+|.|.|...-.
T Consensus 11 ~~l~V~nLp~---------~~te~~L~~~F~~--~G~i~~v~i~---~~~g~afV~f~~~~~ 58 (111)
T 1whx_A 11 TVILAKNLPA---------GTLAAEIQETFSR--FGSLGRVLLP---EGGITAIVEFLEPLE 58 (111)
T ss_dssp EEEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEECC---SSSSCEEEEESCHHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEe---CCCCEEEEEeCCHHH
Confidence 3567889986 4578899999999 8765433332 156799999986543
No 151
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=55.15 E-value=14 Score=32.42 Aligned_cols=50 Identities=22% Similarity=0.193 Sum_probs=37.1
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCC
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKD 181 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~--~Gh~g~aIV~F~~d 181 (574)
+.++.|-|+|. ..+...|++.|+. |.++ .++...++ ..+.|++.|.|.+.
T Consensus 70 ~~~l~v~nl~~---------~~~~~~l~~~F~~--~G~v~~~~i~~~~~~g~~~g~afV~f~~~ 122 (158)
T 2kn4_A 70 MTSLKVDNLTY---------RTSPDTLRRVFEK--YGRVGDVYIPRDRYTKESRGFAFVRFHDK 122 (158)
T ss_dssp CCEEEEESCCT---------TCCHHHHHHHHHH--HSCEEEEECCCCSSCTTSCCEEEEEESBH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEeecCCCCccceEEEEEECCH
Confidence 45677889986 4577899999999 7654 55555553 34789999999863
No 152
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.70 E-value=15 Score=28.73 Aligned_cols=43 Identities=21% Similarity=0.374 Sum_probs=31.4
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcc-cccccCCCCCceeEEEeeCC
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTR-VHPLWNFRGHSGCAVVEFHK 180 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~k-v~~l~~~~Gh~g~aIV~F~~ 180 (574)
++.|-|+|. ..+...|++.|+. |.+.. ++... ..|+|.|.|.+
T Consensus 14 ~l~V~~l~~---------~~t~~~l~~~f~~--~G~i~~~~~~~----~kg~afV~f~~ 57 (85)
T 2ytc_A 14 TLYVGGLGD---------TITETDLRNHFYQ--FGEIRTITVVQ----RQQCAFIQFAT 57 (85)
T ss_dssp CEEEECCTT---------TSCHHHHHHHHHT--TSCEEEEEEEG----GGTEEEEEESS
T ss_pred EEEEcCCCC---------CCCHHHHHHHHHh--CCCEeEEEEEC----CCCEEEEEECC
Confidence 466889986 3577899999999 76543 33332 36899999985
No 153
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.64 E-value=18 Score=29.69 Aligned_cols=48 Identities=17% Similarity=0.217 Sum_probs=33.3
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCC--cccccc-cCCC--CCceeEEEeeCCC
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP--TRVHPL-WNFR--GHSGCAVVEFHKD 181 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p--~kv~~l-~~~~--Gh~g~aIV~F~~d 181 (574)
.+.|-|+|. ..+...|++.|+. |.+ ..+... .... -+.|+|.|.|.+-
T Consensus 10 ~l~V~nLp~---------~~t~~~l~~~f~~--~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~ 62 (109)
T 2dis_A 10 RLFIGGIPK---------MKKREEILEEIAK--VTEGVLDVIVYASAADKMKNRGFAFVEYESH 62 (109)
T ss_dssp EEEEECCCT---------TSCHHHHHHHHHH--HSTTEEEEECCSSSCTTTTTCCEEEEEESSH
T ss_pred EEEEeCCCC---------cCCHHHHHHHHHH--hcCCceEEEEEccCCCCCCcCcEEEEEecCH
Confidence 456889886 3477899999999 744 444443 2222 4689999999863
No 154
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=54.51 E-value=7 Score=23.50 Aligned_cols=23 Identities=22% Similarity=0.509 Sum_probs=16.4
Q ss_pred CeeeccCCCCCCccccChHHHHhhhh
Q 008199 39 EAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 39 ~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
.+|.|+.|+.. +.....|..|-.
T Consensus 2 k~~~C~~C~k~---f~~~~~l~~H~~ 24 (28)
T 2kvf_A 2 RPYSCSVCGKR---FSLKHQMETHYR 24 (28)
T ss_dssp CSEECSSSCCE---ESCHHHHHHHHT
T ss_pred cCccCCCCCcc---cCCHHHHHHHHH
Confidence 47999999733 555677888843
No 155
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=54.45 E-value=18 Score=31.61 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=38.3
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC-C-CCceeEEEeeCCChh
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF-R-GHSGCAVVEFHKDWP 183 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~-~-Gh~g~aIV~F~~dw~ 183 (574)
+.++.|-|+|. ..+...|++.|+. |.+. .+....++ . -+.|++.|.|.+.-.
T Consensus 94 ~~~l~v~nlp~---------~~t~~~l~~~f~~--~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~ 148 (172)
T 2g4b_A 94 AHKLFIGGLPN---------YLNDDQVKELLTS--FGPLKAFNLVKDSATGLSKGYAFCEYVDINV 148 (172)
T ss_dssp TTCEEEECCCT---------TCCHHHHHHHHHT--TSCEEEEEEEECTTTCSEEEEEEEEESSTTH
T ss_pred CCEEEEEcCCC---------cCCHHHHHHHHHh--cCCceEEEEEecCCCCCcceEEEEEeCCHHH
Confidence 67788999986 3467899999999 8764 45555553 2 357999999987544
No 156
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=54.42 E-value=1.3e+02 Score=32.02 Aligned_cols=98 Identities=12% Similarity=0.227 Sum_probs=56.5
Q ss_pred chhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh-----------chHHHHHHHHHH---HH
Q 008199 231 IGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTE-----------TSNSVEKLMEEK---DR 296 (574)
Q Consensus 231 iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e-----------~s~sL~~~meEk---~~ 296 (574)
|-++|.|+ .-=|....+....+|..++|.=.....+++.|..+++. .+..=++||+|+ +.
T Consensus 25 l~d~L~ky------e~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~ 98 (411)
T 3ghg_C 25 IADFLSTY------QTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEA 98 (411)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh------ccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 44555554 33344455556666666666666666777777766543 344445677776 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 008199 297 LLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGE 342 (574)
Q Consensus 297 l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k 342 (574)
++..+...|+.+|..+ .-+..+-.+|..+...|..+|.
T Consensus 99 ~~~~~~~~i~~l~~~~--------~~~~~~i~~L~~~v~~l~~~~~ 136 (411)
T 3ghg_C 99 SILTHDSSIRYLQEIY--------NSNNQKIVNLKEKVAQLEAQCQ 136 (411)
T ss_dssp HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhc
Confidence 4555566666665544 3333333666666666666654
No 157
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=54.31 E-value=17 Score=33.60 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=37.9
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCC-CceeEEEeeCCCh
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRG-HSGCAVVEFHKDW 182 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~G-h~g~aIV~F~~dw 182 (574)
.++.|-|++. ..+...|++.|+. |.+ ..|...++..| +.|+|.|.|...-
T Consensus 89 ~~l~V~nLp~---------~~te~~L~~~F~~--~G~I~~v~i~~d~~g~~kG~afV~F~~~~ 140 (177)
T 2f3j_A 89 AKLLVSNLDF---------GVSDADIQELFAE--FGTLKKAAVDYDRSGRSLGTADVHFERRA 140 (177)
T ss_dssp EEEEEECCCS---------CCCHHHHHHHHHH--TSCCSEEEECCCTTSSCSCCEEEEESCHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEECCCCCEeeEEEEEeCCHH
Confidence 4677889986 4578899999999 765 45666666644 5799999998643
No 158
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=54.10 E-value=7.1 Score=24.92 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=18.1
Q ss_pred cCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 37 SDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 37 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+..+|.|+.|+.. +.....|..|-.
T Consensus 4 ~~k~~~C~~C~k~---f~~~~~l~~H~~ 28 (35)
T 1srk_A 4 GKRPFVCRICLSA---FTTKANCARHLK 28 (35)
T ss_dssp CCSCEECSSSCCE---ESSHHHHHHHHG
T ss_pred CCcCeeCCCCCcc---cCCHHHHHHHHH
Confidence 4678999999733 555677888854
No 159
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.98 E-value=7 Score=25.23 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=17.6
Q ss_pred cCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 37 SDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 37 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~~k~~~C~~C~k~---f~~~~~l~~H~~ 30 (36)
T 2elq_A 6 SGKPFKCSLCEYA---TRSKSNLKAHMN 30 (36)
T ss_dssp CCCSEECSSSSCE---ESCHHHHHHHHH
T ss_pred CCCCccCCCCCch---hCCHHHHHHHHH
Confidence 4578999999743 555666777743
No 160
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=53.97 E-value=14 Score=33.31 Aligned_cols=48 Identities=17% Similarity=0.062 Sum_probs=33.9
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKD 181 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~d 181 (574)
.++.|.|+|. ..+...|++.|+.-||.+..++.+.. ..|++.|.|.+.
T Consensus 121 ~~l~v~nl~~---------~~~~~~l~~~f~~~G~~v~~v~i~~~---~~g~afV~f~~~ 168 (198)
T 1qm9_A 121 ATLHLSNIPP---------SVSEEDLKVLFSSNGGVVKGFKFFQK---DRKMALIQMGSV 168 (198)
T ss_dssp CEEEECCCCT---------TCCHHHHHHHHHHTTSCCCEEEESST---TSSCEEEECSSH
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHHcCCCceEEEEEeC---CCcEEEEEeCCH
Confidence 4566788885 34678999999995544455555443 368999999763
No 161
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=53.73 E-value=15 Score=29.76 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=33.5
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCCh
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDW 182 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw 182 (574)
.++.|-|++. ..+...|++.|+. |.+..-..+. -+.|++.|.|.+.-
T Consensus 28 ~~l~V~nlp~---------~~~~~~l~~~f~~--~G~i~~~~~~---~~~g~afV~f~~~~ 74 (101)
T 2la4_A 28 TTAYIGNIPH---------FATEADLIPLFQN--FGFILDFKHY---PEKGCCFIKYDTHE 74 (101)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHHHT--TSCCSEEEEE---TTTTEEEEECSSHH
T ss_pred CEEEEcCCCc---------ccCHHHHHHHHHh--CCCEEEEEEe---cCCCEEEEEECCHH
Confidence 3566889986 4477899999999 7654333332 35789999998644
No 162
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.61 E-value=7.3 Score=26.09 Aligned_cols=26 Identities=15% Similarity=0.344 Sum_probs=18.6
Q ss_pred eecCCeeeccCCCCCCccccChHHHHhhh
Q 008199 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 35 k~~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
-.++.+|.|+.|+.. +.....|..|-
T Consensus 6 H~~~k~~~C~~C~k~---f~~~~~L~~H~ 31 (42)
T 2en2_A 6 SGGEKPYKCETCGAR---FVQVAHLRAHV 31 (42)
T ss_dssp CCSSCSEECTTTCCE---ESSHHHHHHHT
T ss_pred cCCCCCEeCCCcChh---hCCHHHHHHHH
Confidence 346778999999743 55566777774
No 163
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=53.49 E-value=7.3 Score=23.37 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=14.5
Q ss_pred eeeccCCCCCCccccChHHHHhhh
Q 008199 40 AFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 40 ~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
+|.|+.|+.. +..-..|..|-
T Consensus 2 ~~~C~~C~~~---f~~~~~l~~H~ 22 (29)
T 1ard_A 2 SFVCEVCTRA---FARQEHLKRHY 22 (29)
T ss_dssp CCBCTTTCCB---CSSHHHHHHHH
T ss_pred CeECCCCCcc---cCCHHHHHHHH
Confidence 6899999743 44556677774
No 164
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=53.09 E-value=1e+02 Score=32.75 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhc-----------hHHHHHHHHHHHH
Q 008199 248 MEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTET-----------SNSVEKLMEEKDR 296 (574)
Q Consensus 248 ~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~-----------s~sL~~~meEk~~ 296 (574)
|....+....+|.-|.|.-...+.+++.+...++.. +.+.++|+++..+
T Consensus 36 V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~ 95 (409)
T 1m1j_C 36 TDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIR 95 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHH
Confidence 444555556666666666666777777777776653 5666667666533
No 165
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=52.98 E-value=5.5 Score=32.11 Aligned_cols=48 Identities=19% Similarity=0.077 Sum_probs=32.7
Q ss_pred eEEEeeccccccCCCcccccCchhHH----HHHHhcCCCCcccccccCCCCCceeEEEeeCCC
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLR----DELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKD 181 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~----~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~d 181 (574)
++.|-|+|. ..+...|+ +.|+. |.+.....+.....+.|+|.|.|.+.
T Consensus 10 ~l~V~nLp~---------~~~~~~l~~~l~~~f~~--~G~i~~v~i~~~~~~~g~afV~f~~~ 61 (97)
T 1nu4_A 10 TIYINNLNE---------KIKKDELKKSLHAIFSR--FGQILDILVSRSLKMRGQAFVIFKEV 61 (97)
T ss_dssp EEEEESCCT---------TSCHHHHHHHHHHHHGG--GSCEEEEECCHHHHHTTCEEEEESSH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHHHHHh--CCCEEEEEEEcCCCcCcEEEEEeCCH
Confidence 567889886 34677788 99999 76654433332223568999999854
No 166
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.84 E-value=8.7 Score=32.36 Aligned_cols=59 Identities=24% Similarity=0.223 Sum_probs=36.9
Q ss_pred ceEEEeecccccc--CCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChh
Q 008199 122 WTGIVVNIPTRRA--EDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWP 183 (574)
Q Consensus 122 wmgIi~N~~t~e~--~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw~ 183 (574)
.+++|.|+..... .+..+.......|++.|+. |.++.-..++.. ...|++.|.|.+.-.
T Consensus 16 ~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~--~G~v~~v~i~~~-~~~G~afV~f~~~~~ 76 (112)
T 2dit_A 16 RVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSK--FGQIRKLLLFDR-HPDGVASVSFRDPEE 76 (112)
T ss_dssp CEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGG--TSCCSEEEEETT-CTTCEEEEECSCHHH
T ss_pred eEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHc--cCCEeEEEEecC-CCCEEEEEEECCHHH
Confidence 4688889864111 1222333345789999999 766544344433 478999999986543
No 167
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=52.78 E-value=16 Score=32.60 Aligned_cols=52 Identities=15% Similarity=0.219 Sum_probs=38.1
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC-CC-CceeEEEeeCCChh
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF-RG-HSGCAVVEFHKDWP 183 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~-~G-h~g~aIV~F~~dw~ 183 (574)
+.++.|-|+|. ..+...|++.|+. |.+. .+....++ .| +.|++.|.|.+.-.
T Consensus 114 ~~~l~v~nl~~---------~~~~~~l~~~f~~--~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~ 168 (198)
T 2yh0_A 114 AHKLFIGGLPN---------YLNDDQVKELLTS--FGPLKAFNLVKDSATGLSKGYAFCEYVDINV 168 (198)
T ss_dssp CCEEEEECCCT---------TCCHHHHHHHHHT--BSCEEEEEEEECTTTCSEEEEEEEEESSSSH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHH--cCCccEEEEeecCCCCCcceEEEEEECCHHH
Confidence 46677889886 3467889999999 7664 55666653 33 58999999987544
No 168
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=52.71 E-value=11 Score=35.00 Aligned_cols=49 Identities=16% Similarity=0.229 Sum_probs=38.5
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCCCceeEEEeeCCCh
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRGHSGCAVVEFHKDW 182 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~Gh~g~aIV~F~~dw 182 (574)
.+.|-|++. ..+...|++.|+. |.+ ..++.+++..+.+|++.|.|.+.-
T Consensus 105 ~l~v~nl~~---------~~t~~~l~~~F~~--~G~i~~~~i~~d~~~~~g~~fV~f~~~~ 154 (213)
T 4f02_A 105 NIFIKNLDK---------SIDNKALYDTFSA--FGNILSCKVVCDENGSKGYGFVHFETQE 154 (213)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEEETTEEEEEEEEEESSHH
T ss_pred cceECCccc---------ccHHHHHHHHHhh--cCCeEEEEeeccCCCCceEEEEEeCCHH
Confidence 456889886 3467899999999 765 566777788888999999997754
No 169
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=52.35 E-value=16 Score=30.21 Aligned_cols=57 Identities=12% Similarity=0.089 Sum_probs=35.0
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCC-CCceeEEEeeCCChh
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFR-GHSGCAVVEFHKDWP 183 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~-Gh~g~aIV~F~~dw~ 183 (574)
-++.|-|+|. ...+. ...+...|++.|+. |.++.-..+-... .+.|+|.|.|.+.-.
T Consensus 16 ~~l~V~nLp~-~~~~~--~~~t~~~l~~~F~~--~G~v~~v~i~~~~g~~~G~afV~f~~~~~ 73 (105)
T 2nlw_A 16 SVIVVDNVPQ-VGPDR--LEKLKNVIHKIFSK--FGKITNDFYPEEDGKTKGYIFLEYASPAH 73 (105)
T ss_dssp SEEEEESCCC-CCTTT--TTHHHHHHHHHHGG--GSCEEEEECCCBTTBSCCEEEEEECSSSH
T ss_pred CEEEEeCCCc-chhhh--hHHHHHHHHHHHhc--CCCEEEEEeeCCCCCeeeEEEEEECCHHH
Confidence 3567889985 21110 01145789999999 7765333332333 467999999987544
No 170
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=52.12 E-value=17 Score=30.78 Aligned_cols=50 Identities=20% Similarity=0.167 Sum_probs=37.3
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCC--CCceeEEEeeCCCh
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFR--GHSGCAVVEFHKDW 182 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~--Gh~g~aIV~F~~dw 182 (574)
-++.|-|++. ..+...|++.|+. |.+ ..|+..+++. -+.|++.|.|.+.-
T Consensus 7 ~~lfV~nL~~---------~~te~~L~~~F~~--~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~ 59 (110)
T 3s8s_A 7 KEVTFARLND---------NVRETFLKDMCRK--YGEVEEVEILLHPRTRKHLGLARVLFTSTR 59 (110)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHHTT--TSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred cEEEEECCCC---------CCCHHHHHHHHHh--cCCeeEEEEEECCCCCceeeEEEEEECCHH
Confidence 3567889885 3477899999999 876 4566666654 36899999998743
No 171
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=51.97 E-value=12 Score=31.07 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=34.1
Q ss_pred ceEEEeeccccccCCCcccc-cCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChh
Q 008199 122 WTGIVVNIPTRRAEDGRSVG-ESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWP 183 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G-~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw~ 183 (574)
-++.|-|+|. . .+...|++.|+. |.++.-..+ +.|+|.|.|...-.
T Consensus 28 ~~l~V~nl~~---------~~~t~~~l~~~F~~--~G~v~~v~i-----~~g~afV~f~~~~~ 74 (110)
T 1wf1_A 28 SRVFIGNLNT---------ALVKKSDVETIFSK--YGRVAGCSV-----HKGYAFVQYSNERH 74 (110)
T ss_dssp SEEEECSCCC---------SSCCHHHHHHHHGG--GSCCSEEEE-----ETTEEEEECSSSHH
T ss_pred cEEEEeCCCc---------ccCCHHHHHHHHHh--CCCeEEEEE-----eCCEEEEEECCHHH
Confidence 3677889986 3 467889999999 766544444 67899999977543
No 172
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=51.94 E-value=1e+02 Score=25.68 Aligned_cols=27 Identities=26% Similarity=0.180 Sum_probs=12.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008199 320 FTDHEKLKLQLESQKKELELRGEELEK 346 (574)
Q Consensus 320 ~~e~ekl~~eLe~k~~eL~~r~k~L~k 346 (574)
+.+.+-....|.+++.+|+..-.+|..
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555554433
No 173
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=51.60 E-value=5.7 Score=24.12 Aligned_cols=22 Identities=18% Similarity=0.480 Sum_probs=15.5
Q ss_pred CeeeccCCCCCCccccChHHHHhhh
Q 008199 39 EAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 39 ~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
.+|.|+.|+.. +..-..|..|-
T Consensus 2 k~~~C~~C~k~---f~~~~~l~~H~ 23 (27)
T 2kvg_A 2 APYRCPLCRAG---CPSLASMQAHM 23 (27)
T ss_dssp CTEEETTTTEE---ESCHHHHHHHH
T ss_pred cCcCCCCCCcc---cCCHHHHHHHH
Confidence 57999999732 55566677774
No 174
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.42 E-value=22 Score=28.91 Aligned_cols=51 Identities=12% Similarity=0.200 Sum_probs=36.4
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHh-cCCCCcccccccCCCC-CceeEEEeeCCCh
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIR-RGFNPTRVHPLWNFRG-HSGCAVVEFHKDW 182 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~-~GF~p~kv~~l~~~~G-h~g~aIV~F~~dw 182 (574)
..+.|-|+|. ..+...|++.|+. -| ....+....++.| +.|+|.|.|.+--
T Consensus 10 ~~l~V~nLp~---------~~t~~~l~~~F~~~~G-~v~~v~i~~~~~g~~~g~afV~f~~~~ 62 (104)
T 2dhg_A 10 YSLFVGDLTP---------DVDDGMLYEFFVKVYP-SCRGGKVVLDQTGVSKGYGFVKFTDEL 62 (104)
T ss_dssp CCEEEECCCT---------TCCHHHHHHHHHHHCT-TEEEEEEEECTTCCEEEEEEEEESCHH
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHHhCC-CeEEEEEEECCCCCccceEEEEECCHH
Confidence 3466889986 3467889999987 55 2456666666555 5899999998643
No 175
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=51.29 E-value=15 Score=34.34 Aligned_cols=50 Identities=12% Similarity=0.110 Sum_probs=36.3
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCC-CceeEEEeeCCCh
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRG-HSGCAVVEFHKDW 182 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~G-h~g~aIV~F~~dw 182 (574)
-++.|-|+|. ..+...|++.|+. |.++ .|+......| +.|+|.|.|.+.-
T Consensus 110 ~~l~V~nLp~---------~~t~~~L~~~F~~--~G~v~~v~i~~~~~~~~kG~aFVeF~~~e 161 (193)
T 2voo_A 110 RSVYIKGFPT---------DATLDDIKEWLED--KGQVLNIQMRRTLHKAFKGSIFVVFDSIE 161 (193)
T ss_dssp TEEEEECCCT---------TCCHHHHHHHHTT--SCCEEEEEEEECTTCCEEEEEEEEESSHH
T ss_pred CEEEecCCCC---------cCCHHHHHHHHhc--CCCEEEEEEEECCCCCcccEEEEEECCHH
Confidence 4677899986 2467889999999 8663 4555544444 6799999998743
No 176
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=51.20 E-value=17 Score=32.45 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=36.5
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKD 181 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~--~Gh~g~aIV~F~~d 181 (574)
.++.|-|+|. ..+...|++.|+. |.++ .+....++ ..+.|++.|.|.+.
T Consensus 105 ~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 105 KKIFVGGIKE---------DTEEHHLRDYFEQ--YGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp SEEEEECCTT---------TCCHHHHHHHHTT--TSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred ceEEEeCCCC---------CCCHHHHHHHHhc--CCCeEEEEEeecCCCCCccceEEEEECCH
Confidence 5678899986 3467889999998 8764 45555553 33689999999873
No 177
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.06 E-value=8.8 Score=25.74 Aligned_cols=27 Identities=15% Similarity=0.359 Sum_probs=19.4
Q ss_pred eecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 35 k~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
-....+|.|+.|+.. +.....|..|-.
T Consensus 6 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 32 (42)
T 2eos_A 6 SGGEKPYPCEICGTR---FRHLQTLKSHLR 32 (42)
T ss_dssp CSSSCCBCCSSSCCC---BSSHHHHHHHTT
T ss_pred cCCCCCEECCCCCCc---cCCHHHHHHHHH
Confidence 345678999999743 556677888854
No 178
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.06 E-value=8.7 Score=24.73 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=17.8
Q ss_pred cCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 37 SDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 37 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
...+|.|+.|+.. +.....|..|-.
T Consensus 6 ~~k~~~C~~C~k~---f~~~~~l~~H~~ 30 (36)
T 2elv_A 6 SGLLYDCHICERK---FKNELDRDRHML 30 (36)
T ss_dssp CCCCEECSSSCCE---ESSHHHHHHHHT
T ss_pred CCCCeECCCCCCc---cCCHHHHHHHHH
Confidence 4578999999733 555667778853
No 179
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=51.05 E-value=7.5 Score=23.13 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=13.8
Q ss_pred eeeccCCCCCCccccChHHHHhhh
Q 008199 40 AFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 40 ~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
+|.|+.|+.. +.....|..|-
T Consensus 2 ~~~C~~C~~~---f~~~~~l~~H~ 22 (29)
T 2m0e_A 2 EHKCPHCDKK---FNQVGNLKAHL 22 (29)
T ss_dssp CCCCSSCCCC---CCTTTHHHHHH
T ss_pred CCcCCCCCcc---cCCHHHHHHHH
Confidence 6899999743 33445566664
No 180
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=50.42 E-value=8.1 Score=23.23 Aligned_cols=21 Identities=38% Similarity=0.755 Sum_probs=14.9
Q ss_pred eeeccCCCCCCccccChHHHHhhh
Q 008199 40 AFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 40 ~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
+|.|+.|+.. +..-..|..|-
T Consensus 2 ~~~C~~C~k~---f~~~~~l~~H~ 22 (29)
T 1rik_A 2 KFACPECPKR---FMRSDHLTLHI 22 (29)
T ss_dssp CEECSSSSCE---ESCSHHHHHHH
T ss_pred CccCCCCCch---hCCHHHHHHHH
Confidence 6999999743 45566677774
No 181
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.36 E-value=21 Score=28.63 Aligned_cols=49 Identities=12% Similarity=0.048 Sum_probs=33.3
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccc--cccCCCCCceeEEEeeCCCh
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVH--PLWNFRGHSGCAVVEFHKDW 182 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~--~l~~~~Gh~g~aIV~F~~dw 182 (574)
+..+.|-|+|. ..+...|++.|+. |.++.-. ...+ ..+|.+.|.|.+.-
T Consensus 15 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~v~~~~~i~~~--~~~~~afV~f~~~~ 65 (96)
T 2e44_A 15 IRKLQIRNIPP---------HLQWEVLDSLLVQ--YGVVESCEQVNTD--SETAVVNVTYSSKD 65 (96)
T ss_dssp CCCEEEEEECS---------SSCHHHHHHHHHH--HSCEEEEEEECCS--SSSEEEEEEESSHH
T ss_pred CCEEEEEcCCC---------CCCHHHHHHHHHh--cCCeEEEEEeecC--CCCCEEEEEECCHH
Confidence 35577889986 4477889999999 7665433 2333 34455999997543
No 182
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=50.10 E-value=18 Score=31.12 Aligned_cols=49 Identities=18% Similarity=0.399 Sum_probs=35.6
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCC--CCCceeEEEeeCCC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNF--RGHSGCAVVEFHKD 181 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~--~Gh~g~aIV~F~~d 181 (574)
..+.|-|+|. ..+...|++.|+. |.+ ..+....++ .-+.|++.|.|.+.
T Consensus 88 ~~l~v~nl~~---------~~t~~~l~~~f~~--~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 139 (166)
T 3md3_A 88 FNLFVGDLNV---------NVDDETLRNAFKD--FPSYLSGHVMWDMQTGSSRGYGFVSFTSQ 139 (166)
T ss_dssp EEEEEESCCT---------TCCHHHHHHHHTT--STTEEEEEEEECTTTCCEEEEEEEEESCH
T ss_pred ceEEECCCCC---------CCCHHHHHHHHhc--cCCeeEEEEEecCCCCCcceEEEEEeCCH
Confidence 4577889986 3467899999999 866 445555443 34578999999864
No 183
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=50.09 E-value=13 Score=32.81 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=34.8
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCC
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKD 181 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~d 181 (574)
+.++.|.|+|. ..+...|++.|+. |...... ....-++|++.|.|.+.
T Consensus 99 ~~~l~v~nlp~---------~~t~~~l~~~F~~--~g~v~~~--~~~~~~~g~afV~f~~~ 146 (175)
T 1fje_B 99 ARTLLAKNLSF---------NITEDELKEVFED--ALEIRLV--SQDGKSKGIAYIEFKSE 146 (175)
T ss_dssp GGEEEEESCCS---------SCCHHHHHHHCTT--CSEEEEE--CSSSSCCSEEEEECSSH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCeEEEe--cCCCCCceEEEEEECCH
Confidence 45778899986 3467889999988 7544443 33445789999999863
No 184
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=49.90 E-value=16 Score=31.68 Aligned_cols=56 Identities=20% Similarity=0.325 Sum_probs=38.3
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC-CC-CceeEEEeeCCChhhhHhHHH
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF-RG-HSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~-~G-h~g~aIV~F~~dw~Gf~nA~~ 190 (574)
++.|-|+|. ..+...|++.|+. |.+. .++...++ .| +.|+|.|.|.+. ..-..|+.
T Consensus 5 ~l~v~nlp~---------~~~~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~A~~a~~ 63 (168)
T 1b7f_A 5 NLIVNYLPQ---------DMTDRELYALFRA--IGPINTCRIMRDYKTGYSYGYAFVDFTSE-MDSQRAIK 63 (168)
T ss_dssp EEEEECCCT---------TCCHHHHHHHHHT--TSCEEEEECCEETTTTEECSEEEEEESSH-HHHHHHHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCeeEEEEEEeCCCCccceEEEEEECCH-HHHHHHHH
Confidence 467889986 4577889999999 7765 45555443 23 679999999853 33344443
No 185
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=49.69 E-value=9.2 Score=32.42 Aligned_cols=61 Identities=18% Similarity=0.164 Sum_probs=38.8
Q ss_pred ceEEEeecccccc-CCCcccccCchhHHHHHHhcCCCC-cccccccCCCC----CceeEEEeeCCChhh
Q 008199 122 WTGIVVNIPTRRA-EDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRG----HSGCAVVEFHKDWPG 184 (574)
Q Consensus 122 wmgIi~N~~t~e~-~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~G----h~g~aIV~F~~dw~G 184 (574)
.+++|.|+.+.+. .+......--..|++.|+. |.+ ..|+..-+..+ ..|++.|.|.+.-+.
T Consensus 6 ~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k--~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A 72 (105)
T 3v4m_A 6 EVLCLMNMVLPEELLDDEEYEEIVEDVRDECSK--YGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDC 72 (105)
T ss_dssp SEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHT--TSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHH
T ss_pred eEEEEECCCCHHHccChHHHHHHHHHHHHHHHc--cCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHH
Confidence 3578999976222 3322233344788999999 776 44554444444 369999999886443
No 186
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=49.18 E-value=13 Score=32.09 Aligned_cols=51 Identities=14% Similarity=0.120 Sum_probs=37.2
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcc---cccccCC--CCCceeEEEeeCCChhhh
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTR---VHPLWNF--RGHSGCAVVEFHKDWPGL 185 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~k---v~~l~~~--~Gh~g~aIV~F~~dw~Gf 185 (574)
.+.|-|+|. ..+...|++.|+. |.++. |+...++ .-+.||+.|.|... ..-
T Consensus 25 ~lfV~nL~~---------~~te~~L~~~F~~--~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~ 80 (131)
T 2m2b_A 25 TIILRNLNP---------HSTMDSILGALAP--YAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAA 80 (131)
T ss_dssp EEEECSCCT---------TCCSHHHHHHHGG--GCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHH--hCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHH
Confidence 456889986 3467889999999 76653 5666665 24679999999887 443
No 187
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=49.05 E-value=9.1 Score=22.94 Aligned_cols=22 Identities=23% Similarity=0.558 Sum_probs=15.5
Q ss_pred eeeccCCCCCCccccChHHHHhhhh
Q 008199 40 AFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 40 ~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+|.|+.|+.. +.....|..|..
T Consensus 2 ~~~C~~C~k~---f~~~~~l~~H~~ 23 (30)
T 1klr_A 2 TYQCQYCEFR---SADSSNLKTHIK 23 (30)
T ss_dssp CCCCSSSSCC---CSCSHHHHHHHH
T ss_pred CccCCCCCCc---cCCHHHHHHHHH
Confidence 6899999743 455667777753
No 188
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.00 E-value=6.8 Score=25.37 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=17.9
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
.+..+|.|+.|+.. +..-..|..|-.
T Consensus 5 ~~~k~~~C~~C~k~---f~~~~~l~~H~~ 30 (37)
T 2elo_A 5 SSGRSYSCPVCEKS---FSEDRLIKSHIK 30 (37)
T ss_dssp CCCCCCEETTTTEE---CSSHHHHHHHHH
T ss_pred CCCCCcCCCCCCCc---cCCHHHHHHHHH
Confidence 35678999999733 455566777743
No 189
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=48.91 E-value=15 Score=32.18 Aligned_cols=50 Identities=22% Similarity=0.193 Sum_probs=36.4
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCC
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKD 181 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~--~Gh~g~aIV~F~~d 181 (574)
+.++.|-|+|. ..+...|++.|+. |.++ .|....++ ..+.|++.|.|.+.
T Consensus 47 ~~~l~V~nLp~---------~~te~~L~~~F~~--~G~i~~v~i~~~~~~g~~~G~afV~F~~~ 99 (135)
T 2lea_A 47 MTSLKVDNLTY---------RTSPDTLRRVFEK--YGRVGDVYIPRDRYTKESRGFAFVRFHDK 99 (135)
T ss_dssp CCCEEEECCCS---------SCHHHHHHHHHGG--GSCCSEEECCCCSSSSSCCSCCEEECSCH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEecCCCCccceEEEEEECCH
Confidence 34577899986 3577899999999 7654 55555543 34789999999863
No 190
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=48.90 E-value=9.5 Score=25.39 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=19.4
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+-.++.+|.|+.|+.. +.....|..|-.
T Consensus 5 ~H~~~~~~~C~~C~k~---f~~~~~l~~H~~ 32 (42)
T 2epc_A 5 SSGGETPYLCGQCGKS---FTQRGSLAVHQR 32 (42)
T ss_dssp CCCSSCCEECSSSCCE---ESSHHHHHHHHH
T ss_pred cCCCCCCeECCCCCcc---cCCHHHHHHHhh
Confidence 3346778999999733 555667777754
No 191
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.55 E-value=11 Score=31.38 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=33.0
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcc---cccccCCCCCceeEEEeeCCC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTR---VHPLWNFRGHSGCAVVEFHKD 181 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~k---v~~l~~~~Gh~g~aIV~F~~d 181 (574)
.++.|-|+|. ..+...|++.|+. |.++. +..-.....+.|+|.|.|...
T Consensus 26 ~~l~V~nLp~---------~~t~~~l~~~f~~--~G~v~~~~~~~~~~~g~~~g~afV~f~~~ 77 (115)
T 2cpx_A 26 KVLYLKNLSP---------RVTERDLVSLFAR--FQEKKGPPIQFRMMTGRMRGQAFITFPNK 77 (115)
T ss_dssp SEEEEECCCT---------TCCHHHHHHHTHH--HHHSSSSCCEEEEECSSSCSEEEEECSSH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHH--hCCccceEEEEEcCCCccceEEEEEECCH
Confidence 4567889986 3467889999999 75542 111112445679999999863
No 192
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=48.51 E-value=1.5e+02 Score=31.82 Aligned_cols=54 Identities=22% Similarity=0.341 Sum_probs=38.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHhc-cCCcccc--------eeecC
Q 008199 437 DGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELINALKEL-SGRAHIG--------LKRMG 507 (574)
Q Consensus 437 ~~d~~~~~k~~~l~~~L~ek~~el~~~e~lnq~Li~ker~sNdELqeARk~LI~~l~~~-~~~~~Ig--------iKrmG 507 (574)
++-.+++..+.+|.+++.+.++++. ++++....++..+.++ ...++|| |++-|
T Consensus 69 ~~~~~l~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~ipN~~~~~vP~g~~e~~n~~~~~~g 130 (455)
T 2dq0_A 69 EPVDELLAKSREIVKRIGELENEVE------------------ELKKKIDYYLWRLPNITHPSVPVGKDENDNVPIRFWG 130 (455)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHTTSCCCCCTTSCCCSSGGGCEEEEEES
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhCCCCCCccCCCCCCCCCCEEEEEcC
Confidence 4456778888888888877777663 5555556666667766 4556666 99999
Q ss_pred C
Q 008199 508 E 508 (574)
Q Consensus 508 e 508 (574)
+
T Consensus 131 ~ 131 (455)
T 2dq0_A 131 K 131 (455)
T ss_dssp C
T ss_pred C
Confidence 7
No 193
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.34 E-value=9.9 Score=25.31 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=19.3
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhhhc
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHASG 65 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA~g 65 (574)
.++.+|.|+.|+.. +.....|..|-..
T Consensus 6 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 32 (41)
T 2ept_A 6 SGQRVYECQECGKS---FRQKGSLTLHERI 32 (41)
T ss_dssp CCCCCEECSSSCCE---ESSHHHHHHHGGG
T ss_pred CCCCCeECCCCCCC---cCCHHHHHHHHHH
Confidence 35678999999733 5566778888543
No 194
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.27 E-value=15 Score=29.41 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=32.8
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCCCceeEEEeeCCCh
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRGHSGCAVVEFHKDW 182 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~Gh~g~aIV~F~~dw 182 (574)
.+.|-|+|. ..+...|++.|+. |.+ .....+. +.|+|.|.|.+.-
T Consensus 10 ~l~V~nLp~---------~~t~~~l~~~F~~--~G~vv~~~~~~----~~g~afV~f~~~~ 55 (93)
T 2cqh_A 10 KLYIGNLSP---------AVTADDLRQLFGD--RKLPLAGQVLL----KSGYAFVDYPDQN 55 (93)
T ss_dssp CEEEECCCT---------TCCHHHHHHHHHH--TTCCCSSCEEE----ETTEEEECCSCHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHH--cCCceEEEEEc----CCCEEEEEECCHH
Confidence 356889886 3477899999999 766 5544442 4689999998643
No 195
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=48.26 E-value=16 Score=30.63 Aligned_cols=44 Identities=25% Similarity=0.318 Sum_probs=31.8
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKD 181 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~d 181 (574)
-++.|-|+|. ..+...|++.|+. |.++....+. .|+|.|.|.+.
T Consensus 32 ~~l~V~nLp~---------~~t~~~L~~~F~~--~G~i~~v~i~-----kg~afV~f~~~ 75 (108)
T 2jvo_A 32 TRLFVRPFPL---------DVQESELNEIFGP--FGPMKEVKIL-----NGFAFVEFEEA 75 (108)
T ss_dssp SEEEECSSCT---------TCCHHHHHHHHTT--TSCCCEEEEE-----TTEEEEECSSH
T ss_pred CEEEEECCCC---------CCCHHHHHHHHHh--cCCEEEEEEE-----CCEEEEEECCH
Confidence 4566889886 3467889999999 7664433333 78999999863
No 196
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=48.17 E-value=44 Score=27.56 Aligned_cols=26 Identities=35% Similarity=0.348 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Q 008199 402 NRIIQLEKQLDAKQALALEIERLKGSLNV 430 (574)
Q Consensus 402 ~ki~~LekqL~~kQ~LELEi~qLkg~L~V 430 (574)
..|-.||++|++| +-+|++|+..|.-
T Consensus 40 ~~I~eLEk~L~ek---d~eI~~LqseLDK 65 (72)
T 3nmd_A 40 ALIDELELELDQK---DELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3478888888765 6788888887753
No 197
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=48.07 E-value=9.5 Score=23.11 Aligned_cols=20 Identities=25% Similarity=0.532 Sum_probs=15.1
Q ss_pred eeeccCCCCCCccccChHHHHhh
Q 008199 40 AFTCPYCPKKRKQEYLYKDLLQH 62 (574)
Q Consensus 40 ~~~CP~C~gkkk~~y~~~~LLqH 62 (574)
+|.|+.|+.. +.....|..|
T Consensus 2 ~~~C~~C~k~---f~~~~~l~~H 21 (30)
T 1paa_A 2 AYACGLCNRA---FTRRDLLIRH 21 (30)
T ss_dssp CSBCTTTCCB---CSSSHHHHHH
T ss_pred CcCCcccCcc---cCChHHHHHH
Confidence 6899999743 5566778888
No 198
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=47.71 E-value=1.3e+02 Score=25.53 Aligned_cols=64 Identities=19% Similarity=0.163 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhh
Q 008199 394 KKQKEDLHNRIIQLEKQLDAK----QALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELD 461 (574)
Q Consensus 394 krEke~~~~ki~~LekqL~~k----Q~LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~el~ 461 (574)
+.+++.+..+.-++|.++... -++|-||..|+-+++++.- +=......+...+..|++.+....
T Consensus 15 k~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~----eld~~~e~l~~a~~kLe~~ek~~~ 82 (101)
T 3u59_A 15 KLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTED----EVEKYSESVKEAQEKLEQAEKKAT 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777777776443 3466677777777665532 111223344555555555554444
No 199
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=47.63 E-value=2.1e+02 Score=27.88 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=9.1
Q ss_pred hhcHHHHHHHHHHHHH
Q 008199 349 TQNENDRKILAEEIEK 364 (574)
Q Consensus 349 ~~~~~er~kl~~e~~k 364 (574)
+.|..+...|..|++.
T Consensus 86 v~~~kE~~aL~kEie~ 101 (256)
T 3na7_A 86 IKSERELRSLNIEEDI 101 (256)
T ss_dssp CSSSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4455566666655554
No 200
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.62 E-value=26 Score=27.90 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=30.7
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHK 180 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~ 180 (574)
-++.|-|+|. ..+...|++.|+. |.++.-..+. .|+|.|.|.+
T Consensus 11 ~~l~V~nLp~---------~~t~~~l~~~F~~--~G~v~~v~~~-----~~~afV~f~~ 53 (92)
T 2dgt_A 11 TKLHVGNISP---------TCTNQELRAKFEE--YGPVIECDIV-----KDYAFVHMER 53 (92)
T ss_dssp EEEEEESCCS---------SCCHHHHHHHHHT--TSCCCEEEEC-----SSEEEEEESC
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEE-----CCEEEEEECC
Confidence 4566889986 4577899999999 7654333332 3499999986
No 201
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.50 E-value=9.2 Score=25.09 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=16.6
Q ss_pred cCCeeeccCCCCCCccccChHHHHhh
Q 008199 37 SDEAFTCPYCPKKRKQEYLYKDLLQH 62 (574)
Q Consensus 37 ~~~~~~CP~C~gkkk~~y~~~~LLqH 62 (574)
+..+|.|+.|+.. +..-..|..|
T Consensus 6 ~~k~~~C~~C~k~---f~~~~~L~~H 28 (37)
T 2elm_A 6 SGHLYYCSQCHYS---SITKNCLKRH 28 (37)
T ss_dssp SSCEEECSSSSCE---EECHHHHHHH
T ss_pred CCcCeECCCCCcc---cCCHHHHHHH
Confidence 4678999999733 4455667777
No 202
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=47.33 E-value=16 Score=29.57 Aligned_cols=48 Identities=10% Similarity=0.145 Sum_probs=33.1
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChh
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWP 183 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw~ 183 (574)
..+.|-|+|. ..+...|++.|+. |.+.....+-. ..|+|.|.|...-.
T Consensus 16 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~~~~---~kg~afV~f~~~~~ 63 (99)
T 2cpj_A 16 SRLFVGNLPP---------DITEEEMRKLFEK--YGKAGEVFIHK---DKGFGFIRLETRTL 63 (99)
T ss_dssp TEEEEESCCT---------TCCHHHHHHHTST--TCCCSEEEEET---TTTEEEEECSSSHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHhh--cCCeEEEEEec---CCCEEEEEECCHHH
Confidence 4567889986 3467889999999 76543333322 26899999987543
No 203
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.07 E-value=11 Score=25.68 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=19.0
Q ss_pred eEeecCCeeeccCCCCCCccccChHHHHhhh
Q 008199 33 SVKISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 33 kVk~~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
.+-....+|.|+.|+.. +.....|..|-
T Consensus 5 ~~h~~~~~~~C~~C~k~---f~~~~~L~~H~ 32 (44)
T 2eou_A 5 SSGAAKTTSECQECGKI---FRHSSLLIEHQ 32 (44)
T ss_dssp CSCSSSCCCCCTTTCCC---CSSHHHHHHHH
T ss_pred CCCCCCcCeECCCCCcc---cCCHHHHHHHH
Confidence 33456788999999744 44556677774
No 204
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=46.89 E-value=10 Score=24.97 Aligned_cols=25 Identities=20% Similarity=0.489 Sum_probs=17.8
Q ss_pred cCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 37 SDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 37 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
++.+|.|+.|+.. +.....|..|-.
T Consensus 3 ~~k~~~C~~C~k~---f~~~~~L~~H~~ 27 (39)
T 1njq_A 3 PPRSYTCSFCKRE---FRSAQALGGHMN 27 (39)
T ss_dssp CSSSEECTTTCCE---ESSHHHHHHHHH
T ss_pred CCCceECCCCCcc---cCCHHHHHHHHH
Confidence 4578999999743 455667777854
No 205
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.72 E-value=11 Score=25.10 Aligned_cols=26 Identities=19% Similarity=0.347 Sum_probs=19.1
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
.+..+|.|+.|+.. +.....|..|-.
T Consensus 7 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 32 (42)
T 2ytb_A 7 GGEKPYRCDQCGKA---FSQKGSLIVHIR 32 (42)
T ss_dssp CSCCSBCCTTTTCC---BSSHHHHHTTGG
T ss_pred CCCCCeeCCCccch---hCCHHHHHHHHH
Confidence 45678999999743 556677888854
No 206
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=46.65 E-value=11 Score=25.68 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=19.9
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+-....+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2em9_A 6 SGTGEKPYNCKECGKS---FRWASCLLKHQR 33 (46)
T ss_dssp SCCCCCSEECSSSCCE---ESSHHHHHHHGG
T ss_pred CCCCCcCeECCccccc---cCChHHHHHHHH
Confidence 3446789999999733 556677888854
No 207
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=46.48 E-value=12 Score=30.85 Aligned_cols=55 Identities=15% Similarity=0.019 Sum_probs=36.9
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCC-C-CceeEEEeeCCCh
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFR-G-HSGCAVVEFHKDW 182 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~-G-h~g~aIV~F~~dw 182 (574)
+++|-|+|. -... ....+...|++.|+. |.+ ..++...++. | +.|++.|.|.+.-
T Consensus 8 ~vfV~nLp~-v~~~--~~~~~~~~L~~~F~~--~G~i~~v~i~~d~~tg~~kG~afV~f~~~~ 65 (100)
T 3ns6_A 8 YIVVNGAPV-IPSA--KVPVLKKALTSLFSK--AGKVVNMEFPIDEATGKTKGFLFVECGSMN 65 (100)
T ss_dssp EEEEESCCC-CBGG--GHHHHHHHHHHHHHT--TSCEEEEECCEETTTTEECSEEEEEESSHH
T ss_pred EEEEeCCCc-CChH--HHHHHHHHHHHHHHh--cCCEeEEEEEEcCCCCccceEEEEEECCHH
Confidence 577889984 1111 112356889999999 765 4566666654 3 6799999998643
No 208
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=45.83 E-value=87 Score=28.14 Aligned_cols=72 Identities=21% Similarity=0.291 Sum_probs=36.3
Q ss_pred HHHHHHhhhhhhhhhccCCCCch----HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhc------chHHHHHHHH
Q 008199 418 ALEIERLKGSLNVMKHMGDDGDI----EVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKS------NDELQDARKE 487 (574)
Q Consensus 418 ELEi~qLkg~L~VmKhm~~~~d~----~~~~k~~~l~~~L~ek~~el~~~e~lnq~Li~ker~s------NdELqeARk~ 487 (574)
.--|..|++.+.--.++..+... ++..--.+|...|..-+.+ +++|..+..+-|+-. .+||+. |+.
T Consensus 37 q~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~d---LeDLe~sI~ivE~np~kF~l~~~Ei~~-Rr~ 112 (130)
T 4dnd_A 37 QKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWD---LEDLEETIGIVEANPGKFKLPAGDLQE-RKV 112 (130)
T ss_dssp HHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCHHHHCCCHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhCHHhcCCCHHHHHH-HHH
Confidence 33344445555544444433222 3333344444444444444 456777777777544 678866 776
Q ss_pred HHHHHH
Q 008199 488 LINALK 493 (574)
Q Consensus 488 LI~~l~ 493 (574)
.|..++
T Consensus 113 fV~~~r 118 (130)
T 4dnd_A 113 FVERMR 118 (130)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 209
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=45.79 E-value=18 Score=31.52 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=35.3
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCC--CCceeEEEeeCCC
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFR--GHSGCAVVEFHKD 181 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~--Gh~g~aIV~F~~d 181 (574)
++.|-|+|. ..+...|++.|+. |.+ ..+...+++. -..|+|.|.|...
T Consensus 48 ~l~V~nLp~---------~~te~~L~~~F~~--~G~I~~v~i~~d~~tg~~~G~afV~F~~~ 98 (129)
T 2kxn_B 48 CLGVFGLSL---------YTTERDLREVFSK--YGPIADVSIVYDQQSRRSRGFAFVYFENV 98 (129)
T ss_dssp CBCEETCTT---------SCCHHHHHHHHTT--TSCEEEEEEECCSSSSCCCCEEEEEESCH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEecCCCCccceEEEEEECCH
Confidence 455889986 3577889999999 765 4555555543 4689999999764
No 210
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=45.58 E-value=23 Score=30.44 Aligned_cols=48 Identities=13% Similarity=0.141 Sum_probs=34.7
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC-C-CCceeEEEeeCCC
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF-R-GHSGCAVVEFHKD 181 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~-~-Gh~g~aIV~F~~d 181 (574)
++.|-|+|. ..+...|++.|+. |.+. .++...++ . .+.|+|.|.|.+.
T Consensus 4 ~l~v~nlp~---------~~~~~~l~~~f~~--~G~i~~v~~~~~~~~~~~~g~afV~f~~~ 54 (167)
T 1fxl_A 4 NLIVNYLPQ---------NMTQEEFRSLFGS--IGEIESCKLVRDKITGQSLGYGFVNYIDP 54 (167)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred eEEEcCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEeCCCCCcceeEEEEEECCH
Confidence 466889986 4577889999999 7664 45555544 2 3569999999863
No 211
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=45.51 E-value=11 Score=30.72 Aligned_cols=58 Identities=14% Similarity=0.223 Sum_probs=39.2
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCC--CCCceeEEEeeCCChhhhHhHHH
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNF--RGHSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~--~Gh~g~aIV~F~~dw~Gf~nA~~ 190 (574)
+..+.|-|+|. ..+...|++.|+. |.++....+... .-+.|+|.|.|.+. ..-..|+.
T Consensus 17 ~~~l~V~nLp~---------~~t~~~l~~~F~~--~G~v~~~~~~~~~~g~~~g~afV~f~~~-~~a~~A~~ 76 (101)
T 1fj7_A 17 PFNLFIGNLNP---------NKSVAELKVAISE--LFAKNDLAVVDVRTGTNRKFGYVDFESA-EDLEKALE 76 (101)
T ss_dssp SEEEEEECCCT---------TSCHHHHHHHHHH--HHHHHTCCCCEEEEETTTTEEEEEESSH-HHHHHHHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHH--hCCcceEEEecCCCCCcCcEEEEEECCH-HHHHHHHh
Confidence 34677889986 3477889999999 766554333332 23678999999753 44455554
No 212
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.45 E-value=11 Score=25.59 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=19.8
Q ss_pred eecCCeeeccCCCCCCccccChHHHHhhhhc
Q 008199 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHASG 65 (574)
Q Consensus 35 k~~~~~~~CP~C~gkkk~~y~~~~LLqHA~g 65 (574)
-..+.+|.|+.|+.. +.....|..|...
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (44)
T 2yu5_A 7 GAGENPFKCSKCDRV---FTQRNYLVQHERT 34 (44)
T ss_dssp CSCCCSEECSSSSCE---ESSSHHHHHHHHH
T ss_pred cCCCCCeECCCCCch---hCCHHHHHHHhHh
Confidence 345678999999743 5566778888543
No 213
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.32 E-value=11 Score=25.73 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=19.0
Q ss_pred eecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 35 k~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
-....+|.|+.|+.. +.....|..|-.
T Consensus 7 H~~~~~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2emi_A 7 GTGERHYECSECGKA---FIQKSTLSMHQR 33 (46)
T ss_dssp CSSCCCEECSSSCCE---ESSHHHHHHHHG
T ss_pred cCCCCCCCCCCCCcc---cCCHHHHHHHHh
Confidence 345678999999743 555667777743
No 214
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=45.31 E-value=11 Score=25.11 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=18.7
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 31 (42)
T 2el5_A 6 SGENPYECSECGKA---FNRKDQLISHQR 31 (42)
T ss_dssp SSCCSEECSSSCCE---ESSHHHHHHHHG
T ss_pred CCCCCccCCCcChh---hCCHHHHHHHHH
Confidence 35678999999743 556677778854
No 215
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.18 E-value=11 Score=25.40 Aligned_cols=28 Identities=25% Similarity=0.468 Sum_probs=19.7
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+-.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (44)
T 2emb_A 6 SGHTRKRYECSKCQAT---FNLRKHLIQHQK 33 (44)
T ss_dssp CCCCCSSEECTTTCCE---ESCHHHHHHHGG
T ss_pred ccCCCCCeECCCCCCc---cCCHHHHHHHHH
Confidence 3356778999999743 555667778854
No 216
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.14 E-value=12 Score=25.60 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=19.8
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+-.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2enf_A 6 SGTGEKPYKCNECGKV---FTQNSHLVRHRG 33 (46)
T ss_dssp CCCCCCSCBCSSSCCB---CSSHHHHHHHHT
T ss_pred CCCCCcCeECCCCCcc---cCCHHHHHHHHH
Confidence 3356788999999743 556677888853
No 217
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=45.04 E-value=20 Score=31.17 Aligned_cols=56 Identities=13% Similarity=0.088 Sum_probs=36.6
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccc---ccc-----CCCCCceeEEEeeCCChhhhHhHHH
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVH---PLW-----NFRGHSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~---~l~-----~~~Gh~g~aIV~F~~dw~Gf~nA~~ 190 (574)
++.|-|+|. ..+...|++.|+. |.+.... +.+ ....+.|+|.|.|.+.-. -..|+.
T Consensus 47 ~l~V~nLp~---------~~te~~L~~~F~~--~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~-A~~Ai~ 110 (143)
T 3egn_A 47 RIYVKNLAK---------HVQEKDLKYIFGR--YVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKA-AAKALK 110 (143)
T ss_dssp EEEEEEECT---------TCCHHHHHHHHGG--GCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHH-HHHHHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHH--hCCcccccccceeeEEeccCCCcccEEEEEeCCHHH-HHHHHH
Confidence 467889986 3577899999999 7654431 111 234568999999975433 334444
No 218
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.88 E-value=12 Score=25.55 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=20.0
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+-.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2yts_A 6 SGTGEKPYICNECGKS---FIQKSHLNRHRR 33 (46)
T ss_dssp CCCSCCSEECSSSCCE---ESSHHHHHHHGG
T ss_pred CCCCCcCEECCCCChh---hCChHHHHHHHH
Confidence 3346778999999733 556677888854
No 219
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.69 E-value=12 Score=25.64 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=19.0
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+-.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2en9_A 6 SGAGKKLFKCNECKKT---FTQSSSLTVHQR 33 (46)
T ss_dssp SCCSSCCCBCTTTCCB---CSSHHHHHHHHH
T ss_pred CCCCCCCEECCccCcc---cCCHHHHHHHHH
Confidence 3456788999999743 555566777743
No 220
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.59 E-value=13 Score=25.46 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=20.3
Q ss_pred eEeecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 33 SVKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 33 kVk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
.+-.+..+|.|+.|+.. +.....|..|-.
T Consensus 5 ~~h~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2elz_A 5 SSGSVEKPYKCEDCGKG---YNRRLNLDMHQR 33 (46)
T ss_dssp SCCCCCSSCBCSSSCCB---CSSHHHHHHHGG
T ss_pred CCCCCCCCeeCcccCch---hCCHHHHHHHHH
Confidence 34456789999999743 555667777854
No 221
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=44.50 E-value=1.5e+02 Score=25.31 Aligned_cols=72 Identities=24% Similarity=0.224 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHhH----HHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 008199 395 KQKEDLHNRIIQLEKQLDA----KQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTL 470 (574)
Q Consensus 395 rEke~~~~ki~~LekqL~~----kQ~LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~lnq~L 470 (574)
.+++.+..+.-++|.++.. .-++|-||..|+-+++++.- +=......+.+....|++.+......|+-+.+|
T Consensus 16 ~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~----eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L 91 (101)
T 3u1c_A 16 LDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTED----SRDQVLEELHKSEDSLLFAEENAAKAESEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777766543 33477778888777776532 111233445555555555555555333333333
No 222
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.49 E-value=12 Score=25.56 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=19.5
Q ss_pred eecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 35 k~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
-.+..+|.|+.|+.. +.....|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eq1_A 7 GTGEKPYKCNECGKA---FRAHSNLTTHQV 33 (46)
T ss_dssp CCCSCCCCCTTTTCC---CSSHHHHHHHHT
T ss_pred cCCCCCeECCcCChh---hCCHHHHHHHHH
Confidence 345778999999743 556677888854
No 223
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.43 E-value=22 Score=28.28 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=30.7
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKD 181 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~d 181 (574)
.++.|-|+|. ..+...|++.|+. |.+..-..+. .|++.|.|.+.
T Consensus 10 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~v~~~~~~-----~~~afV~f~~~ 53 (90)
T 2dnp_A 10 WKIFVGNVSA---------ACTSQELRSLFER--RGRVIECDVV-----KDYAFVHMEKE 53 (90)
T ss_dssp CCEEEESCCT---------TCCHHHHHHHHHH--HSCEEEEEEC-----SSCEEEEESCH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHc--CCCEEEEEEE-----CCEEEEEECCH
Confidence 3466889986 4577899999999 7664333232 34999999853
No 224
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.32 E-value=9.4 Score=26.14 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=21.1
Q ss_pred eEeecCCeeeccCCCCCCccccChHHHHhhhhc
Q 008199 33 SVKISDEAFTCPYCPKKRKQEYLYKDLLQHASG 65 (574)
Q Consensus 33 kVk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~g 65 (574)
.+-.+..+|.|+.|+. .+.....|..|-..
T Consensus 5 ~~h~~~k~~~C~~C~k---~f~~~~~L~~H~~~ 34 (46)
T 2ysp_A 5 SSGTGEKPYKCEKCGK---GYNSKFNLDMHQKV 34 (46)
T ss_dssp CCCSSCCSEEETTTTE---EESCHHHHHHHHTT
T ss_pred cCCCCCCCeECCCCCC---ccCCHHHHHHHHHh
Confidence 3445678999999973 35566778888543
No 225
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.26 E-value=13 Score=24.75 Aligned_cols=26 Identities=19% Similarity=0.442 Sum_probs=18.4
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
.++.+|.|+.|+.. +.....|..|-.
T Consensus 6 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 31 (42)
T 2yte_A 6 SGEKPYSCAECKET---FSDNNRLVQHQK 31 (42)
T ss_dssp CSCCSCBCTTTCCB---CSSHHHHHHHHH
T ss_pred CCCCCeECCCCCCc---cCCHHHHHHHHH
Confidence 45678999999743 555667777754
No 226
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.22 E-value=12 Score=25.22 Aligned_cols=26 Identities=19% Similarity=0.456 Sum_probs=18.5
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
.+..+|.|+.|+.. +.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (44)
T 2eof_A 8 TGEKPYECNECQKA---FNTKSNLMVHQR 33 (44)
T ss_dssp SCCCSEECTTTCCE---ESCHHHHHHHHH
T ss_pred CCCCCeECCCCCcc---cCCHhHHHHHHH
Confidence 45678999999733 555667777753
No 227
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=43.98 E-value=17 Score=31.28 Aligned_cols=49 Identities=24% Similarity=0.341 Sum_probs=35.5
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCC--CCceeEEEeeCCCh
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFR--GHSGCAVVEFHKDW 182 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~--Gh~g~aIV~F~~dw 182 (574)
++.|-|++. ..+...|++.|+. |.+ ..|+...++. -+.|+|.|.|.+.-
T Consensus 44 ~l~V~nLp~---------~~~~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 95 (139)
T 1u6f_A 44 NLMVNYIPT---------TVDEVQLRQLFER--YGPIESVKIVCDRETRQSRGYGFVKFQSGS 95 (139)
T ss_dssp EEEEESCST---------TCCHHHHHHHHHH--HSCEEEEEEEEETTTTEEEEEEEEEESSHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEEcCCCCCcceEEEEEECCHH
Confidence 466788886 3467889999999 765 4555555543 35899999998643
No 228
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.89 E-value=14 Score=25.24 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=19.8
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+-.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2emg_A 6 SGTGENPFICSECGKV---FTHKTNLIIHQK 33 (46)
T ss_dssp CCCSCCSCBCTTTCCB---CSSHHHHHHHHT
T ss_pred CCCCCCCEECCccCcc---cCCHHHHHHHHH
Confidence 3345678999999743 556677888854
No 229
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=43.81 E-value=15 Score=27.07 Aligned_cols=27 Identities=15% Similarity=0.397 Sum_probs=18.5
Q ss_pred eecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 35 k~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
-.++.+|.|+.|+.. +.....|..|-.
T Consensus 5 h~~~k~~~C~~C~k~---f~~~~~l~~H~~ 31 (66)
T 2drp_A 5 KEGEHTYRCKVCSRV---YTHISNFCRHYV 31 (66)
T ss_dssp EEETTEEECTTTCCE---ESSHHHHHHHHH
T ss_pred cCCCcceECCCCcch---hCCHHHHHHHHH
Confidence 356789999999743 445666777743
No 230
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.76 E-value=12 Score=25.40 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=18.5
Q ss_pred eecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 35 k~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
-.+..+|.|+.|+.. +.....|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eow_A 7 GTGEKPYKCNECGKA---FRARSSLAIHQA 33 (46)
T ss_dssp SCCCCCEECTTSCCE---ESSHHHHHHHHH
T ss_pred CCCCCCeeccccCCh---hcCHHHHHHHHH
Confidence 346778999999733 555566777743
No 231
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.68 E-value=14 Score=25.15 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=19.8
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+-....+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (44)
T 2epv_A 6 SGSGEKPYECNECGKA---FIWKSLLIVHER 33 (44)
T ss_dssp CCCCCCSEECSSSCCE---ESSHHHHHHHHG
T ss_pred ccCCCcCeECCCCCcc---cCchHHHHHHHh
Confidence 3346778999999733 556677888854
No 232
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=43.66 E-value=26 Score=31.64 Aligned_cols=49 Identities=12% Similarity=-0.040 Sum_probs=35.4
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCC---CcccccccCC--CCCceeEEEeeCCC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFN---PTRVHPLWNF--RGHSGCAVVEFHKD 181 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~---p~kv~~l~~~--~Gh~g~aIV~F~~d 181 (574)
-.+.|-|++. ..+...|++.|+. |. ...|+...++ .-..||+.|.|.+.
T Consensus 56 ~~lfVgnLp~---------~~te~~L~~~F~~--~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~ 109 (156)
T 3n9u_C 56 AAVYVGSFSW---------WTTDQQLIQVIRS--IGVYDVVELKFAENRANGQSKGYAEVVVASE 109 (156)
T ss_dssp CEEEEECCCT---------TCCHHHHHHHHHH--TTCCCEEEEEEEECTTTCCEEEEEEEEESCH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHH--HCCccEEEEEEEecCCCCccceEEEEEECCH
Confidence 3667888886 3577899999999 66 4556655553 23579999999753
No 233
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.66 E-value=12 Score=25.14 Aligned_cols=26 Identities=19% Similarity=0.292 Sum_probs=19.0
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
.+..+|.|+.|+.. +.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (44)
T 2en7_A 8 TGMKPYVCNECGKA---FRSKSYLIIHTR 33 (44)
T ss_dssp SSSSSSCCTTTCCC---CSSHHHHHHHHT
T ss_pred CCCcCeECCCCCCc---cCCHHHHHHHhh
Confidence 45678999999743 556677888854
No 234
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.64 E-value=14 Score=25.35 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=19.9
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+-....+|.|+.|+.. +..-..|..|-.
T Consensus 6 ~h~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2enh_A 6 SGTGEKPYECDVCRKA---FSHHASLTQHQR 33 (46)
T ss_dssp CCCCSSSCBCTTTCCB---CSSSHHHHHHGG
T ss_pred CcCCCCCcCCCCcCch---hCCHHHHHHHHH
Confidence 3456778999999743 556677888854
No 235
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=43.63 E-value=24 Score=30.56 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=36.2
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCC
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKD 181 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~--~Gh~g~aIV~F~~d 181 (574)
+.++.|-|+|. ..+...|++.|+. |.+. .+....++ ..++|++.|.|.+.
T Consensus 89 ~~~l~v~nl~~---------~~t~~~l~~~f~~--~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 141 (168)
T 1b7f_A 89 DTNLYVTNLPR---------TITDDQLDTIFGK--YGSIVQKNILRDKLTGRPRGVAFVRYNKR 141 (168)
T ss_dssp TCEEEEESCCT---------TCCHHHHHHHHTS--SSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCCEEEeCCCC---------CCCHHHHHHhhhc--CCcEEEEEEEEcCCCCCcceEEEEEECCH
Confidence 35678899986 3467889999999 7654 45555544 33579999999863
No 236
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.53 E-value=13 Score=25.37 Aligned_cols=26 Identities=23% Similarity=0.497 Sum_probs=18.9
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
....+|.|+.|+.. +.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ytf_A 8 TGEKPFECSECQKA---FNTKSNLIVHQR 33 (46)
T ss_dssp CCCCSEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCCCcCCCCCCcc---cCCHHHHHHHHH
Confidence 45678999999733 556677777854
No 237
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=43.24 E-value=13 Score=21.97 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=14.7
Q ss_pred eeeccCCCCCCccccChHHHHhhhh
Q 008199 40 AFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 40 ~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+|.|+.|+.. +.....|..|-.
T Consensus 1 ~~~C~~C~k~---f~~~~~l~~H~~ 22 (27)
T 1znf_A 1 XYKCGLCERS---FVEKSALSRHQR 22 (27)
T ss_dssp -CBCSSSCCB---CSSHHHHHHHGG
T ss_pred CccCCCCCCc---CCCHHHHHHHHH
Confidence 4889999733 455667777853
No 238
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=43.22 E-value=25 Score=33.02 Aligned_cols=48 Identities=17% Similarity=0.062 Sum_probs=34.2
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKD 181 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~d 181 (574)
.++.|-|+|. ..+...|++.|+.-||....++.+.. ..|++.|.|.+.
T Consensus 152 ~~l~V~nlp~---------~~t~~~l~~~f~~~G~~i~~v~i~~~---~~g~afV~f~~~ 199 (229)
T 2adc_A 152 ATLHLSNIPP---------SVSEEDLKVLFSSNGGVVKGFKFFQK---DRKMALIQMGSV 199 (229)
T ss_dssp SEEEEECCCT---------TCCHHHHHHHHHTTSCCEEEEEECSS---STTCEEEEESSH
T ss_pred CEEEEeCCCc---------cCCHHHHHHHHHHcCCCeeEEEEEEC---CCcEEEEEECCH
Confidence 6678889986 34678999999994444455555432 367999999773
No 239
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.07 E-value=12 Score=25.48 Aligned_cols=26 Identities=19% Similarity=0.428 Sum_probs=19.1
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
.+..+|.|+.|+.. +.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ep3_A 8 TGEKPYRCAECGKA---FTDRSNLFTHQK 33 (46)
T ss_dssp SCCCSEECSSSCCE---ESSHHHHHHHHT
T ss_pred CCCCCeECCCCCch---hCCHHHHHHHHH
Confidence 45678999999733 566677888854
No 240
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=42.84 E-value=23 Score=31.51 Aligned_cols=57 Identities=11% Similarity=0.144 Sum_probs=39.2
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCC-C-CceeEEEeeCCChhhhHhHHH
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFR-G-HSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~-G-h~g~aIV~F~~dw~Gf~nA~~ 190 (574)
-++.|-|+|. ..+...|++.|+. |.+. .++...++. | +.|+|.|.|.+. ..-..|+.
T Consensus 14 ~~l~V~nLp~---------~~te~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~-~~A~~A~~ 73 (196)
T 1l3k_A 14 RKLFIGGLSF---------ETTDESLRSHFEQ--WGTLTDCVVMRDPNTKRSRGFGFVTYATV-EEVDAAMN 73 (196)
T ss_dssp GEEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTTCCEEEEEEEEESSH-HHHHHHHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--CCCEEEEEEEEcCCCCCccceEEEEeCCH-HHHHHHHh
Confidence 3577889996 4477899999999 7654 555555543 3 689999999753 33444443
No 241
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.76 E-value=13 Score=25.39 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=19.9
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+-....+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2ytp_A 6 SGTGERHYECSECGKA---FARKSTLIMHQR 33 (46)
T ss_dssp SSCCCCCEECSSSCCE---ESSHHHHHHHHT
T ss_pred CcCCCCCeECCcCCcc---cCCHHHHHHHHH
Confidence 3356788999999733 556677888854
No 242
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.59 E-value=13 Score=25.51 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=19.7
Q ss_pred eecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 35 k~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
-....+|.|+.|+.. +.....|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eon_A 7 GTGEKPYKCQVCGKA---FRVSSHLVQHHS 33 (46)
T ss_dssp CSSCCSCBCSSSCCB---CSSHHHHHHHTT
T ss_pred CCCCcccCCCCCCcc---cCcHHHHHHHHH
Confidence 346778999999743 556677888854
No 243
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.32 E-value=13 Score=25.38 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=19.0
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+-....+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~~~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2em3_A 6 SGTGEKPYECKVCSKA---FTQKAHLAQHQK 33 (46)
T ss_dssp CCSSCCSEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCCCcCeECCCCCcc---cCCHHHHHHHHH
Confidence 3345778999999733 555666777743
No 244
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=42.30 E-value=14 Score=25.25 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=18.6
Q ss_pred eEeecCCeeeccCCCCCCccccChHHHHhhh
Q 008199 33 SVKISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 33 kVk~~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
++-....+|.|+.|+.. +..-..|..|-
T Consensus 5 ~~H~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2ely_A 5 SSGTGEKPFKCVECGKG---FSRRSALNVHH 32 (46)
T ss_dssp CCCCCCCSBCCSSSCCC---BSSTTHHHHHH
T ss_pred CCCCCCCCcccCccCcc---cCCHHHHHHHH
Confidence 34456788999999743 44455666664
No 245
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=42.18 E-value=68 Score=33.92 Aligned_cols=56 Identities=29% Similarity=0.485 Sum_probs=39.1
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC-CC-CceeEEEeeCCChhhhHhHH
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF-RG-HSGCAVVEFHKDWPGLHNAM 189 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~-~G-h~g~aIV~F~~dw~Gf~nA~ 189 (574)
-++.|-|++. ..+...|.+.|+. |.++ .|..+++. .| +.|||.|.|..--. -..|+
T Consensus 103 ~~lfV~nL~~---------~~te~~L~~~F~~--~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~-A~~Ai 161 (437)
T 3pgw_S 103 KTLFVARVNY---------DTTESKLRREFEV--YGPIKRIHMVYSKRSGKPRGYAFIEYEHERD-MHSAY 161 (437)
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHH--cCCeeEEEeeccCCCCCccceEEEeeccHHH-HHHHH
Confidence 4677889986 3467889999999 8654 55555553 23 57999999976543 33444
No 246
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.15 E-value=15 Score=24.99 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=18.7
Q ss_pred eecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 35 k~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
-.+..+|.|+.|+.. +.....|..|-.
T Consensus 7 H~~~~~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eov_A 7 GTGEKPYKCSDCGKS---FTWKSRLRIHQK 33 (46)
T ss_dssp CSSCCSCBCSSSCCB---CSSHHHHHHHHH
T ss_pred CCCCCCccCCccChh---hCCHHHHHHHHH
Confidence 345678999999743 555666777743
No 247
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.11 E-value=13 Score=25.21 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=19.3
Q ss_pred eecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 35 k~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
-.+..+|.|+.|+.. +.....|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2epw_A 7 GTGEKPCKCTECGKA---FCWKSQLIMHQR 33 (46)
T ss_dssp CCCCCSEECSSSCCE---ESSSHHHHHHHH
T ss_pred CCCCCCeeCCCCCCc---cCCHHHHHHHHH
Confidence 345678999999733 566677777754
No 248
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.06 E-value=14 Score=25.18 Aligned_cols=26 Identities=27% Similarity=0.623 Sum_probs=18.8
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
.+..+|.|+.|+.. +.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eme_A 8 SGEKPYVCDYCGKA---FGLSAELVRHQR 33 (46)
T ss_dssp CCCCSEECSSSCCE---ESSHHHHHHHHG
T ss_pred CCCCCeECCCCChh---hCCHHHHHHHHH
Confidence 45678999999743 556677778854
No 249
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.98 E-value=15 Score=25.12 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=18.5
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
+-....+|.|+.|+.. +.....|..|-
T Consensus 6 ~h~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2em8_A 6 SGSGEKPYKCVECGKG---YKRRLDLDFHQ 32 (46)
T ss_dssp CCCSCCSEECSSSCCE---ESSHHHHHHHH
T ss_pred CCCCCCCeECcccCch---hCCHHHHHHHH
Confidence 3456789999999733 44556677774
No 250
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.95 E-value=15 Score=25.16 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=19.1
Q ss_pred eecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 35 k~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
-.+..+|.|+.|+.. +.....|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2yth_A 7 GSGEKPFQCEECGKR---FTQNSHLHSHQR 33 (46)
T ss_dssp CCCSSSBCCSSSCCC---BSSHHHHHHHGG
T ss_pred CCCCcCCCCCCCCcc---cCCHHHHHHHHH
Confidence 346778999999743 555667777753
No 251
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.90 E-value=14 Score=25.31 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=19.1
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+-....+|.|+.|+.. +.....|..|-.
T Consensus 6 ~h~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2eom_A 6 SGHGERGHRCSDCGKF---FLQASNFIQHRR 33 (46)
T ss_dssp CCCCCSSCCCSSSCCC---CSSHHHHHHHHH
T ss_pred CCCCCCCcCCCCCCCe---eCChHHHHHHHH
Confidence 3346778999999743 555666777743
No 252
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=41.81 E-value=22 Score=29.01 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=31.2
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCCh
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDW 182 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw 182 (574)
++.|-|+|. ..+...|++.|+. |.++....+. .|++.|.|...-
T Consensus 13 ~l~V~nl~~---------~~t~~~l~~~F~~--~G~i~~v~~~-----~~~afV~f~~~~ 56 (103)
T 2dgu_A 13 VLFVRNLAN---------TVTEEILEKAFSQ--FGKLERVKKL-----KDYAFIHFDERD 56 (103)
T ss_dssp CEEEECCCT---------TCCHHHHHHHHHH--HSCEEEEEEC-----SSCEEEEESSHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEE-----CCEEEEEeCCHH
Confidence 466889986 3477889999999 7664433332 459999998643
No 253
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.80 E-value=13 Score=25.31 Aligned_cols=26 Identities=19% Similarity=0.539 Sum_probs=18.5
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
.+..+|.|+.|+.. +.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ytj_A 8 TGEKPYICAECGKA---FTIRSNLIKHQK 33 (46)
T ss_dssp SSCCSEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCcCeECCCCChh---hCCHHHHHHHHH
Confidence 45678999999743 556667777753
No 254
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.77 E-value=14 Score=25.09 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=19.7
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+-.+..+|.|+.|+.. +..-..|..|-.
T Consensus 6 ~H~~~~~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2yrj_A 6 SGTGEKPYRCGECGKA---FAQKANLTQHQR 33 (46)
T ss_dssp CCCCCCCEECSSSCCE---ESSHHHHHHHHT
T ss_pred CCCCCCCeECCCCCCc---cCCHHHHHHHHH
Confidence 3346778999999733 556667778854
No 255
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.57 E-value=35 Score=27.31 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=36.1
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChhhhHhHHH
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw~Gf~nA~~ 190 (574)
.+.|-|+|. ..+...|++.|+. |.++.-.+.....|. ++.|.|.+ -..-..|+.
T Consensus 10 ~l~V~nl~~---------~~t~~~l~~~F~~--~G~v~~v~~~~~~g~--~afV~f~~-~~~a~~ai~ 63 (94)
T 2e5g_A 10 SVFVSGFPR---------GVDSAQLSEYFLA--FGPVASVVMDKDKGV--FAIVEMGD-VGAREAVLS 63 (94)
T ss_dssp EEEEECCCT---------TCCHHHHHHHGGG--TSCEEEEEECSSSCC--EEEEEESS-HHHHHHHHT
T ss_pred EEEEECCCC---------CCCHHHHHHHHHh--cCCeEEEEEcCCCCc--EEEEEECC-HHHHHHHHh
Confidence 355778885 3467889999999 876554333333344 99999976 444555555
No 256
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.56 E-value=15 Score=24.96 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=20.2
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+-.++.+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (47)
T 2epx_A 6 SGTGKKPYECIECGKA---FIQNTSLIRHWR 33 (47)
T ss_dssp CCCCCCSBCCSSSCCC---BSSHHHHHHHHT
T ss_pred ccCCCCCEECCccCch---hCChHHHHHHhH
Confidence 3346778999999743 556677888854
No 257
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=41.47 E-value=2.3e+02 Score=26.70 Aligned_cols=16 Identities=13% Similarity=0.300 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 008199 396 QKEDLHNRIIQLEKQL 411 (574)
Q Consensus 396 Eke~~~~ki~~LekqL 411 (574)
++-.+..+|..|||+-
T Consensus 119 e~r~L~Ekl~~lEKe~ 134 (168)
T 3o0z_A 119 ERKEAQDMLNHSEKEK 134 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556666777777653
No 258
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.47 E-value=14 Score=25.05 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=19.3
Q ss_pred eecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 35 k~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
-.+..+|.|+.|+.. +..-..|..|-.
T Consensus 7 H~~~~~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eop_A 7 GTGEKPHECRECGKS---FSFNSQLIVHQR 33 (46)
T ss_dssp CCCCCSCBCTTTCCB---CSSHHHHHHHHT
T ss_pred cCCCCCeeCCCCCch---hCCHHHHHHHHH
Confidence 345778999999743 556677878853
No 259
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.44 E-value=15 Score=25.18 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=18.5
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
+-.+..+|.|+.|+.. +.....|..|-
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2em2_A 6 SGSGEKPFKCKECGKA---FRQNIHLASHL 32 (46)
T ss_dssp SCCCCCSEECSSSCCE---ESSHHHHHHHH
T ss_pred CCCCCCCEECCcCCch---hCCHHHHHHHH
Confidence 3346778999999743 45556677774
No 260
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.33 E-value=11 Score=25.78 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=18.4
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
+-....+|.|+.|+.. +..-..|..|-
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2eoz_A 6 SGTGEKPYSCNVCGKA---FVLSAHLNQHL 32 (46)
T ss_dssp CCSSCCSEEETTTTEE---ESSHHHHHHHH
T ss_pred cCCCCCCeECcccChh---hCCHHHHHHHH
Confidence 3346778999999733 55556677774
No 261
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.22 E-value=14 Score=25.18 Aligned_cols=25 Identities=20% Similarity=0.402 Sum_probs=17.4
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
..+.+|.|+.|+.. +.....|..|-
T Consensus 8 ~~~k~~~C~~C~k~---F~~~~~L~~H~ 32 (46)
T 2en3_A 8 TGEKPFQCKECGMN---FSWSCSLFKHL 32 (46)
T ss_dssp CCCCSEECSSSCCE---ESSSHHHHHHH
T ss_pred CCCCCeeCcccChh---hCCHHHHHHHH
Confidence 45678999999733 45556666664
No 262
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=41.13 E-value=11 Score=28.49 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=16.5
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
+-....+|.|+.|... +.....|..|-
T Consensus 8 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~ 34 (72)
T 1x6e_A 8 IHSGEKPYGCVECGKA---FSRSSILVQHQ 34 (72)
T ss_dssp TTTTCCCEECSSSCCE---ESSHHHHHHHH
T ss_pred ccCCCCCccCCCCCCc---cCCHHHHHHHH
Confidence 3345678888888633 44455566664
No 263
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=41.11 E-value=29 Score=29.22 Aligned_cols=53 Identities=15% Similarity=0.092 Sum_probs=35.2
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChhhhHhHH
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAM 189 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw~Gf~nA~ 189 (574)
.++.|-|+|. ..+...|++.|+. |.++.-..+-. ..|+|.|+|.. ...-..|+
T Consensus 16 ~~l~V~nLp~---------~~te~~L~~~F~~--fG~V~~v~i~~---~kg~aFVef~~-~~~A~~Ai 68 (104)
T 1wex_A 16 PVVHVRGLCE---------SVVEADLVEALEK--FGTICYVMMMP---FKRQALVEFEN-IDSAKECV 68 (104)
T ss_dssp SEEEEESCCS---------SCCHHHHHHHHTT--TSCEEEEEEET---TTTEEEEEESS-HHHHHHHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--CCCEEEEEEEC---CCCEEEEEECC-HHHHHHHH
Confidence 4677889985 4577889999999 87644322221 26899999986 33333444
No 264
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.00 E-value=15 Score=25.15 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=18.5
Q ss_pred eecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 35 k~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
-....+|.|+.|+.. +.....|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2yto_A 7 GTGEKPYKCSDCGKA---FTRKSGLHIHQQ 33 (46)
T ss_dssp CCSCCCEECSSSCCE---ESSHHHHHHHHH
T ss_pred cCCCCCEECcccCCc---cCCHhHHHHHHH
Confidence 346778999999733 555566777743
No 265
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.97 E-value=13 Score=25.45 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=19.2
Q ss_pred eecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 35 k~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
-.+..+|.|+.|+.. +.....|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2yti_A 7 GTGEKPYKCNECGKV---FTQNSHLARHRG 33 (46)
T ss_dssp CSCCCTTCCSSSCCC---CSSHHHHHHHHT
T ss_pred CCCCcCeECCCCCcc---cCChhHHHHHhH
Confidence 345778999999743 555667778853
No 266
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=40.92 E-value=13 Score=26.48 Aligned_cols=23 Identities=26% Similarity=0.259 Sum_probs=12.9
Q ss_pred CCeeeccCCCCCCccccChHHHHhhh
Q 008199 38 DEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 38 ~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
+.+|.||.|+.. +.....|..|-
T Consensus 2 ~~~~~C~~C~~~---f~~~~~l~~H~ 24 (57)
T 3uk3_C 2 SSSRECSYCGKF---FRSNYYLNIHL 24 (57)
T ss_dssp ---CBCTTTCCB---CSCHHHHHHHH
T ss_pred CCCccCCCCcch---hCChHHHHHHH
Confidence 467899999743 44455566663
No 267
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.77 E-value=15 Score=25.06 Aligned_cols=28 Identities=18% Similarity=0.401 Sum_probs=19.6
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+-.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2em6_A 6 SGMGEKCYKCDVCGKE---FSQSSHLQTHQR 33 (46)
T ss_dssp CCCCCCCCBCSSSCCB---CSSHHHHHHHHT
T ss_pred ccCCCCCeECCCCCcc---cCCHHHHHHHHH
Confidence 3346778999999743 555667778853
No 268
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=40.61 E-value=76 Score=26.57 Aligned_cols=44 Identities=20% Similarity=0.373 Sum_probs=30.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhh
Q 008199 404 IIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELD 461 (574)
Q Consensus 404 i~~LekqL~~kQ~LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~el~ 461 (574)
+++|..||+ .|.-||.+|+|.+++.-| .|+.+.+...+-..+|+
T Consensus 22 ~~~Lq~Ql~---~Lq~Ev~~LRGqiE~~~~-----------~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 22 LTQLQQQLS---DNQSDIDSLRGQIQENQY-----------QLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHhHHHHHHH-----------HHHHHHHHHHHHHHHHH
Confidence 456666665 688899999999998765 45566666655555553
No 269
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=40.55 E-value=1e+02 Score=26.07 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHH
Q 008199 396 QKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVL 450 (574)
Q Consensus 396 Eke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l~ 450 (574)
+++.+..+|..|+.|.+ +|+.+|+++..+|. +.+....+++-|+.|+
T Consensus 2 ~~~~L~~~i~~L~~q~~---~L~~ei~~~~a~L~-----~~~~~~~~~~hI~~Lh 48 (85)
T 3viq_B 2 EKSQLESRVHLLEQQKE---QLESSLQDALAKLK-----NRDAKQTVQKHIDLLH 48 (85)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHHHHHHHHHTCS-----SSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhc-----cCCHHHHHHHHHHHHH
Confidence 46778888988888765 78999999998885 2222233444566665
No 270
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.52 E-value=15 Score=25.12 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=18.9
Q ss_pred eecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 35 k~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
-....+|.|+.|+.. +.....|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eoh_A 7 GSGKKPYECKECRKT---FIQIGHLNQHKR 33 (46)
T ss_dssp CCCSCSCCCSSSCCC---CSSHHHHHHHHH
T ss_pred cCCCCCcCCCCcCch---hCCHHHHHHHHH
Confidence 345678999999743 455666777754
No 271
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.51 E-value=15 Score=25.17 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=19.8
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+-....+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eoy_A 6 SGQKEKCFKCNKCEKT---FSCSKYLTQHER 33 (46)
T ss_dssp CCCCSCCEECSSSCCE---ESSSHHHHHHHT
T ss_pred ccCCCCCEECcCCCCc---CCCHHHHHHHHH
Confidence 3346678999999733 556677888854
No 272
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=40.34 E-value=29 Score=29.99 Aligned_cols=50 Identities=12% Similarity=0.171 Sum_probs=36.0
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCC--CCCceeEEEeeCCChh
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNF--RGHSGCAVVEFHKDWP 183 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~--~Gh~g~aIV~F~~dw~ 183 (574)
.+.|-|+|. ..+...|++.|+. |.+ ..++...++ .-+.|+|.|.|.+.-.
T Consensus 5 ~l~v~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~ 57 (167)
T 2cjk_A 5 KMFIGGLNW---------DTTEDNLREYFGK--YGTVTDLKIMKDPATGRSRGFGFLSFEKPSS 57 (167)
T ss_dssp EEEECSCCT---------TCCHHHHHHHHTT--TCCEEEEECCCCTTTSSCCSCEEEEESSTHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--CCCEEEEEEEECCCCCCccceEEEEEccHHH
Confidence 466888886 4577889999999 765 445555543 3477999999986543
No 273
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.15 E-value=14 Score=25.23 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=18.7
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
.+..+|.|+.|+.. +.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eq2_A 8 TGGKPYQCNECGKA---FSQTSKLARHQR 33 (46)
T ss_dssp SSSCSSSCCSSCCC---CSSHHHHHHHGG
T ss_pred CCCCCeECCCCCcc---cCCHHHHHHHHH
Confidence 45678999999743 556667777743
No 274
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.11 E-value=15 Score=25.10 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=19.5
Q ss_pred eecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 35 k~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
-.+..+|.|+.|+. .+.....|..|-.
T Consensus 7 H~~~k~~~C~~C~k---~f~~~~~L~~H~~ 33 (46)
T 2em7_A 7 GTGEKPYKCEECGK---GFICRRDLYTHHM 33 (46)
T ss_dssp SSCCCSEECSSSCC---EESCHHHHHHHGG
T ss_pred CCCCcCccCCCccc---hhCCHHHHHHHHH
Confidence 34567899999973 3566677888854
No 275
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.96 E-value=17 Score=24.86 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=19.0
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+-....+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2em4_A 6 SGTGQRPYECIECGKA---FKTKSSLICHRR 33 (46)
T ss_dssp CCCCSSSEECSSSCCE---ESSHHHHHHHHH
T ss_pred ccCCCcCcCCCCCCCc---cCCHHHHHHHHH
Confidence 3346778999999733 555566777743
No 276
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=39.88 E-value=34 Score=27.94 Aligned_cols=45 Identities=11% Similarity=0.157 Sum_probs=31.2
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCCh
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDW 182 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw 182 (574)
.+.|-|++. . ..+...|++.|+. |.++....+ ..|+|.|.|.+.-
T Consensus 24 ~l~V~nLp~-~-------~~t~~~L~~~F~~--~G~v~~v~i-----~~g~afV~f~~~~ 68 (97)
T 2xnq_A 24 RLFIGNLPL-K-------NVSKEDLFRIFSP--YGHIMQINI-----KNAFGFIQFDNPQ 68 (97)
T ss_dssp EEEEESCCS-S-------CCCHHHHHHHHGG--GSCEEEEEE-----CSSEEEEEESSHH
T ss_pred EEEEeCCCc-c-------cCCHHHHHHHHHh--cCCEEEEEE-----eCCEEEEEECCHH
Confidence 355788872 0 3467889999999 766544333 3789999998743
No 277
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.71 E-value=15 Score=24.94 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=19.0
Q ss_pred eecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 35 k~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
-.+..+|.|+.|+.. +..-..|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ep1_A 7 GTGEKPYECSDCGKS---FIKKSQLHVHQR 33 (46)
T ss_dssp CSSCCSSCCSSSCCC---CSSHHHHHHHHG
T ss_pred CCCCCCcCCCCCCch---hCCHHHHHHHHH
Confidence 345778999999744 555667777754
No 278
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.66 E-value=16 Score=24.95 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=19.8
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+-.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2ytn_A 6 SGTGKKPYKCNECGKV---FTQNSHLARHRG 33 (46)
T ss_dssp CCSCCSSCBCTTTCCB---CSSHHHHHHHGG
T ss_pred CCCCCcCeECCCCCCe---eCCHHHHHHHhh
Confidence 3356788999999743 556667778854
No 279
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.66 E-value=17 Score=24.76 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=19.9
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+-.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2epz_A 6 SGTGEKPFDCIDCGKA---FSDHIGLNQHRR 33 (46)
T ss_dssp SCCCCCSBCCTTTCCC---BSSHHHHHHHHT
T ss_pred CcCCCCCeECCCCCce---eCCHHHHHHHHH
Confidence 3456778999999743 556677778854
No 280
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=39.39 E-value=35 Score=30.88 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=38.7
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCC--CCCceeEEEeeCCChhhhHhHHH
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNF--RGHSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~--~Gh~g~aIV~F~~dw~Gf~nA~~ 190 (574)
.++.|-|+|. ..+...|++.|+. |.+ ..++.+..+ .-+.|+|.|.|.+. ..-..|+.
T Consensus 29 ~~l~V~nLp~---------~~t~~~l~~~f~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~-~~A~~A~~ 88 (216)
T 2qfj_A 29 SRVYVGSIYY---------ELGEDTIRQAFAP--FGPIKSIDMSWDSVTMKHKGFAFVEYEVP-EAAQLALE 88 (216)
T ss_dssp TEEEEECCCT---------TCCHHHHHHHHGG--GSCEEEEEECCC-CC-CCCSEEEEEESSH-HHHHHHHH
T ss_pred CEEEEECCCC---------CCCHHHHHHHHHh--CCCEEEEEEeecCCCCccCceEEEEeCCH-HHHHHHHH
Confidence 4678899996 3577899999999 765 445555554 23789999999753 33334443
No 281
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.35 E-value=16 Score=24.96 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=18.6
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
.+..+|.|+.|+.. +.....|..|-.
T Consensus 8 ~~~~~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eoq_A 8 TGEKPFKCDICGKS---FCGRSRLNRHSM 33 (46)
T ss_dssp SSSCSCCCSSSCCC---CSSHHHHHHHHH
T ss_pred CCCCCcCCCcCCch---hCCHHHHHHHHH
Confidence 45678999999743 556667777754
No 282
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=39.33 E-value=2e+02 Score=25.30 Aligned_cols=61 Identities=18% Similarity=0.254 Sum_probs=41.9
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 008199 343 ELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQA 416 (574)
Q Consensus 343 ~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~ 416 (574)
+|...+.+--.-|+||....+.-......++..++.++.+. -..+.+||-+|.+||.....
T Consensus 43 Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~-------------Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 43 NITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAA-------------VSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
Confidence 33333444445678888777777777888888888875443 33566899999999987654
No 283
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=39.31 E-value=37 Score=29.11 Aligned_cols=49 Identities=16% Similarity=0.252 Sum_probs=35.5
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC-CC-CceeEEEeeCCC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF-RG-HSGCAVVEFHKD 181 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~-~G-h~g~aIV~F~~d 181 (574)
..+.|-|+|. ..+...|++.|+. |.+. .++...+. .| +.|++.|.|.+.
T Consensus 89 ~~l~v~nl~~---------~~t~~~l~~~f~~--~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 140 (167)
T 1fxl_A 89 ANLYVSGLPK---------TMTQKELEQLFSQ--YGRIITSRILVDQVTGVSRGVGFIRFDKR 140 (167)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CcEEECCCCC---------cCCHHHHHHHHHh--cCCEeEEEEEecCCCCCccceEEEEeCCH
Confidence 4577889986 3467899999999 7654 45555544 33 579999999874
No 284
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.29 E-value=17 Score=24.61 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=17.5
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
....+|.|+.|+.. +.....|..|-
T Consensus 6 ~~~k~~~C~~C~k~---f~~~~~L~~H~ 30 (43)
T 2yrm_A 6 SGNGAFFCNECDCR---FSEEASLKRHT 30 (43)
T ss_dssp SSSCCBCCSSSCCC---BSSHHHHHHHH
T ss_pred CCCCCEECCCCCCe---eCChHHHHHHH
Confidence 35678999999744 44556677774
No 285
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.29 E-value=15 Score=24.98 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=19.3
Q ss_pred eecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 35 k~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
-.+..+|.|+.|+.. +.....|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ep2_A 7 GTGEKPYECSICGKS---FTKKSQLHVHQQ 33 (46)
T ss_dssp SSCCCSEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCCcCcCCCCCCcc---cCCHHHHHHHHH
Confidence 345778999999733 556677777854
No 286
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.23 E-value=16 Score=24.89 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=19.3
Q ss_pred eecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 35 k~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
-.+..+|.|+.|+.. +.....|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2enc_A 7 GSGEKPFKCEECGKG---FYTNSQCYSHQR 33 (46)
T ss_dssp CCCCCSEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCCCCcCCCCCCCc---CCChHHHHHHHH
Confidence 345778999999733 556677878854
No 287
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.19 E-value=15 Score=24.90 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=17.6
Q ss_pred eecCCeeeccCCCCCCccccChHHHHhhh
Q 008199 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 35 k~~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
-.+..+|.|+.|+.. +.....|..|-
T Consensus 7 H~~~~~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2eor_A 7 GTGEKPYNCEECGKA---FIHDSQLQEHQ 32 (46)
T ss_dssp SSCCCSEECTTTCCE---ESSHHHHHHHH
T ss_pred cCCCcCccCCCCCCC---cCCHHHHHHHH
Confidence 345778999999733 44555666664
No 288
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.18 E-value=11 Score=25.37 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=19.3
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhhhc
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHASG 65 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA~g 65 (574)
.+..+|.|+.|+. .+.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k---~f~~~~~L~~H~~~ 34 (44)
T 2eoj_A 8 TGENPYECCECGK---VFSRKDQLVSHQKT 34 (44)
T ss_dssp SSCCSCEETTTTE---ECSSHHHHHHHHTT
T ss_pred CCCcCeeCCCCCC---ccCCHHHHHHHHHH
Confidence 4567899999973 35566778888543
No 289
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.17 E-value=17 Score=24.80 Aligned_cols=28 Identities=18% Similarity=0.444 Sum_probs=19.3
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+-.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~~~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2yso_A 6 SGSREKSHQCRECGEI---FFQYVSLIEHQV 33 (46)
T ss_dssp CSSCCCCEECTTTCCE---ESSHHHHHHHHH
T ss_pred ccCCCCCEEccccChh---hCCHHHHHHHHH
Confidence 3345678999999743 556667777743
No 290
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.06 E-value=16 Score=25.00 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=19.9
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+-.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~~~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2em5_A 6 SGSSTKSHQCHECGRG---FTLKSHLNQHQR 33 (46)
T ss_dssp CCCCSCSEECSSSCCE---ESSHHHHHHHHT
T ss_pred CCCCCCCeECCcCCCc---cCCHHHHHHHHH
Confidence 3346778999999733 556677888853
No 291
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.97 E-value=16 Score=24.95 Aligned_cols=25 Identities=20% Similarity=0.477 Sum_probs=17.5
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
.+..+|.|+.|+.. +.....|..|-
T Consensus 8 ~~~k~~~C~~C~k~---F~~~~~L~~H~ 32 (46)
T 2emh_A 8 TGERPYICTVCGKA---FTDRSNLIKHQ 32 (46)
T ss_dssp SCCCSEECTTTCCE---ESSHHHHHHHH
T ss_pred CCCCCcCCCCCCch---hCCHHHHHHHH
Confidence 45678999999733 45556676664
No 292
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.90 E-value=16 Score=24.94 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=17.2
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
....+|.|+.|+.. +.....|..|-
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2emz_A 8 SGERPFKCNECGKG---FGRRSHLAGHL 32 (46)
T ss_dssp SCCCSCCCSSSCCC---CSSHHHHHHHH
T ss_pred CCCCCeECCCCCcc---cCCHHHHHHHH
Confidence 45678999999743 44555666663
No 293
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=38.88 E-value=18 Score=24.76 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=18.1
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
+-.+..+|.|+.|+.. +..-..|..|-
T Consensus 6 ~H~~~k~~~C~~C~k~---F~~~~~L~~H~ 32 (46)
T 2emj_A 6 SGTGEKPFECAECGKS---FSISSQLATHQ 32 (46)
T ss_dssp CCCCCCSEECSSSSCE---ESSHHHHHHHH
T ss_pred CCCCCCCEECCCCCcc---cCCHHHHHHHH
Confidence 3345778999999733 44556666664
No 294
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.83 E-value=16 Score=24.83 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=18.8
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
+-.+..+|.|+.|+.. +.....|..|-
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2yu8_A 6 SGTGEKPYKCNECGKV---FTQNSHLARHR 32 (46)
T ss_dssp CCCCCSSEECSSSCCE---ESSSHHHHHHT
T ss_pred CCCCCCCeECCcCCch---hCCHHHHHHHH
Confidence 3456789999999733 55566677774
No 295
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.67 E-value=12 Score=25.44 Aligned_cols=26 Identities=23% Similarity=0.453 Sum_probs=19.0
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
....+|.|+.|+. .+.....|..|..
T Consensus 8 ~~~k~~~C~~C~k---~F~~~~~L~~H~~ 33 (45)
T 2epu_A 8 TGQKPFECTHCGK---SFRAKGNLVTHQR 33 (45)
T ss_dssp CSCCSEEETTTTE---EESSHHHHHHHHT
T ss_pred CCCcCccCCCCCC---ccCChHHHHHHHH
Confidence 4567899999973 3556677888854
No 296
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=38.67 E-value=16 Score=24.78 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=19.2
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
.+..+|.|+.|+. .+.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k---~f~~~~~L~~H~~ 33 (46)
T 2el4_A 8 TGVKPYGCSQCAK---TFSLKSQLIVHQR 33 (46)
T ss_dssp CCCCSEECSSSSC---EESSHHHHHHHGG
T ss_pred CCCCceECCCCCc---hhCCHHHHHHHHH
Confidence 4567899999973 3566777888854
No 297
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.49 E-value=17 Score=24.82 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=18.8
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
.+..+|.|+.|+.. +.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ene_A 8 TGEKPYKCNECGKV---FRHNSYLSRHQR 33 (46)
T ss_dssp CCSSSEECSSSCCE---ESSHHHHHHHHT
T ss_pred CCCCCeECCCCCch---hCChHHHHHHHh
Confidence 45778999999733 555667778854
No 298
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=38.45 E-value=2.3e+02 Score=31.04 Aligned_cols=88 Identities=16% Similarity=0.315 Sum_probs=52.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 008199 320 FTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKED 399 (574)
Q Consensus 320 ~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~ 399 (574)
+.++++|+..|...+.++.+=...++.++++ +.-.+-|||.|..+.-.+ .+||+.
T Consensus 348 vae~~~lrQRlddArNEItsaeSaInslqaq---------------------vSa~t~e~k~A~d~l~a~----~kek~~ 402 (602)
T 1cii_A 348 VAEWDKLRQRLLDARNKITSAESAVNSARNN---------------------LSARTNEQKHANDALNAL----LKEKEN 402 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH----HHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 3466778777777777766655555433332 112222333333222111 256777
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhh
Q 008199 400 LHNRIIQLEKQLDAKQALALEIERLKGSLNVMK 432 (574)
Q Consensus 400 ~~~ki~~LekqL~~kQ~LELEi~qLkg~L~VmK 432 (574)
+.+.+-.+.+...++++=+-|..+++..+..+-
T Consensus 403 ~~n~~a~~~~KiAE~KrK~dE~~aIKDAVkfTA 435 (602)
T 1cii_A 403 IRNQLSGINQKIAEEKRKQDELKATKDAINFTT 435 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 777777777777777777778888888777663
No 299
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.33 E-value=12 Score=25.56 Aligned_cols=26 Identities=19% Similarity=0.452 Sum_probs=18.7
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
.+..+|.|+.|+. .+.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k---~f~~~~~L~~H~~ 33 (46)
T 2eq3_A 8 TGEKPYECNQCGK---AFSVRSSLTTHQA 33 (46)
T ss_dssp CCCCSSEETTTTE---ECSSHHHHHHHHT
T ss_pred CCCCCeECCCCCh---hhCCHHHHHHHHH
Confidence 4567899999973 3556677778854
No 300
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.29 E-value=17 Score=24.88 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=17.9
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
.++.+|.|+.|+.. +.....|..|-
T Consensus 8 ~~~k~~~C~~C~k~---F~~~~~L~~H~ 32 (46)
T 2eoo_A 8 SGERPYGCNECGKN---FGRHSHLIEHL 32 (46)
T ss_dssp SCCCCEECSSSCCE---ESSHHHHHHHH
T ss_pred CCCCCEEccccCcc---cCCHHHHHHHH
Confidence 45778999999733 55566677774
No 301
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.24 E-value=17 Score=24.71 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=18.8
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
.+..+|.|+.|+.. +..-..|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2eq0_A 8 TGEKPYKCHECGKV---FRRNSHLARHQL 33 (46)
T ss_dssp TCCCCEECTTTCCE---ESSHHHHHHHHT
T ss_pred CCCCCeECCCCCch---hCCHHHHHHHHH
Confidence 45678999999743 556667778854
No 302
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=38.23 E-value=17 Score=23.22 Aligned_cols=22 Identities=36% Similarity=0.778 Sum_probs=15.3
Q ss_pred eeeccCCCCCCccccChHHHHhhhh
Q 008199 40 AFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 40 ~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+|.|+.|+.. +.....|..|-.
T Consensus 2 p~~C~~C~k~---F~~~~~L~~H~~ 23 (33)
T 1rim_A 2 KFACPECPKR---FMRSDHLSKHIT 23 (33)
T ss_dssp CCCCSSSCCC---CSSHHHHHHHHH
T ss_pred cccCCCCCch---hCCHHHHHHHHH
Confidence 6899999743 555666777743
No 303
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.18 E-value=19 Score=24.54 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=19.0
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+-.+..+|.|+.|+.. +..-..|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2emy_A 6 SGTGENPYECHECGKA---FSRKYQLISHQR 33 (46)
T ss_dssp CCCSSCCEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCCCcCcCCCCCCcc---cCcHHHHHHHHH
Confidence 3346788999999743 555666777743
No 304
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=38.17 E-value=25 Score=29.35 Aligned_cols=50 Identities=16% Similarity=0.111 Sum_probs=33.5
Q ss_pred ceEEEeeccccccCCCcccccCchhHH---HHHHhcCCCCc-ccccccCCC-----CCceeEEEeeCCCh
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLR---DELIRRGFNPT-RVHPLWNFR-----GHSGCAVVEFHKDW 182 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~---~~l~~~GF~p~-kv~~l~~~~-----Gh~g~aIV~F~~dw 182 (574)
-++.|-|+|. ..+...|+ +.|+. |.+. .+....+.. .++|+|.|.|...-
T Consensus 16 ~~l~V~nLp~---------~~~~~~l~~~~~~F~~--~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~ 74 (111)
T 2cpi_A 16 NLVFVVGLSQ---------RLADPEVLKRPEYFGK--FGKIHKVVINNSTSYAGSQGPSASAYVTYIRSE 74 (111)
T ss_dssp SCEEEEEECT---------TTCCHHHHHSTTTTTT--TSCEEEEEEECCSSCCSSSCCCEEEEEEESSHH
T ss_pred CEEEEECCCC---------CCCHHHHHHHHHHhhc--cCCEEEEEEecCCCcCccCCCCeEEEEEECcHH
Confidence 4567889986 23567788 88888 7764 444443332 45689999998643
No 305
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=38.17 E-value=32 Score=32.91 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=34.2
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChh
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWP 183 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw~ 183 (574)
.++.|-|++. ..+...|++.|+. |.++.-..+. .+..|++.|+|.+.-.
T Consensus 208 ~~l~v~nl~~---------~~~~~~l~~~F~~--~G~i~~v~~~--~~~~g~afV~f~~~~~ 256 (282)
T 3pgw_A 208 HILFLTNLPE---------ETNELMLSMLFNQ--FPGFKEVRLV--PGRHDIAFVEFDNEVQ 256 (282)
T ss_pred CEEEEeCCCC---------cCCHHHHHHHHHh--cCCeEEEEEe--cCCCcEEEEEeCCHHH
Confidence 4577888875 3467899999999 8664433333 3446899999987543
No 306
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.16 E-value=16 Score=25.11 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=18.7
Q ss_pred eEeecCCeeeccCCCCCCccccChHHHHhhh
Q 008199 33 SVKISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 33 kVk~~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
.+-.+..+|.|+.|+.. +..-..|..|-
T Consensus 5 ~~h~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2ytm_A 5 SSGTGEKPYKCMECGKA---FGDNSSCTQHQ 32 (46)
T ss_dssp CCCSSCCSSSBTTTTBC---CSSHHHHHHHH
T ss_pred cCCCCCCCcCCCCCCch---hCCHHHHHHHH
Confidence 34456778999999743 44555666664
No 307
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.07 E-value=17 Score=24.54 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=18.0
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 31 (44)
T 2emx_A 6 SGEKPFGCSCCEKA---FSSKSYLLVHQQ 31 (44)
T ss_dssp SSCCCEECSSSSCE---ESSHHHHHHHHH
T ss_pred CCCcCccCCCCCcc---cCCHHHHHHHHH
Confidence 45678999999743 555666777743
No 308
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.00 E-value=16 Score=24.85 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=18.5
Q ss_pred eecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 35 k~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
-.+..+|.|+.|+.. +..-..|..|-.
T Consensus 7 H~~~~~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ytk_A 7 GSGEKPYKCNECGKV---FTQNSHLTNHWR 33 (46)
T ss_dssp SSSSCSEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCCCCEeCCcCCCc---cCCHHHHHHHHH
Confidence 345778999999743 455566777743
No 309
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=38.00 E-value=16 Score=27.94 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=14.6
Q ss_pred cCCeeeccCCCCCCccccChHHHHhhh
Q 008199 37 SDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 37 ~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
|+.+|.|+.|+.. +.....|..|-
T Consensus 1 SEKpy~C~~C~k~---F~~~~~L~~H~ 24 (60)
T 4gzn_C 1 SERPFFCNFCGKT---YRDASGLSRHR 24 (60)
T ss_dssp CCCCEECTTTCCE---ESSHHHHHHHH
T ss_pred CCCCccCCCCCCE---eCCHHHHHHHH
Confidence 4567888888633 44455566554
No 310
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.86 E-value=17 Score=24.78 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=19.1
Q ss_pred eecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 35 k~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
-.+..+|.|+.|+.. +.....|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eml_A 7 GTGEKPYECSVCGKA---FSHRQSLSVHQR 33 (46)
T ss_dssp CSSCCSEECSSSCCE---ESSHHHHHHHHG
T ss_pred cCCCCCeeCCCcCCc---cCCHHHHHHHHH
Confidence 346788999999733 555667777754
No 311
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=37.77 E-value=16 Score=25.82 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=18.4
Q ss_pred cCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 37 SDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 37 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
.+.+|.|+.|+. .+.....|..|-.
T Consensus 4 ~~kp~~C~~C~k---~F~~~~~L~~H~~ 28 (48)
T 3iuf_A 4 RDKPYACDICGK---RYKNRPGLSYHYA 28 (48)
T ss_dssp TTSCEECTTTCC---EESSHHHHHHHHH
T ss_pred CCcCEECCCcCc---ccCCHHHHHHHhh
Confidence 467899999973 3556677888865
No 312
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.55 E-value=13 Score=25.19 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=19.4
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+-.++.+|.|+.|+. .+.....|..|-.
T Consensus 6 ~H~~~~~~~C~~C~k---~F~~~~~L~~H~~ 33 (44)
T 2eox_A 6 SGTDSKSYNCNECGK---AFTRIFHLTRHQK 33 (44)
T ss_dssp CCCCCCCEEETTTTE---EESSSHHHHTTHH
T ss_pred CCCCCCCeECcccCc---ccCCHHHHHHHHH
Confidence 334678899999973 3556667777753
No 313
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.42 E-value=18 Score=24.55 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=19.9
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+-.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~~~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2en8_A 6 SGSGEKSHTCDECGKN---FCYISALRIHQR 33 (46)
T ss_dssp CCCCCSSEECTTTCCE---ESSHHHHHHHHT
T ss_pred cCCCCCCeECCCcCcc---cCCHHHHHHHHH
Confidence 3346778999999743 556677888854
No 314
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.40 E-value=17 Score=24.90 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=20.1
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhhhc
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHASG 65 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~g 65 (574)
+-.++.+|.|+.|+.. +..-..|..|-..
T Consensus 6 ~H~~~k~~~C~~C~k~---F~~~~~L~~H~~~ 34 (46)
T 2emf_A 6 SGTGGKHFECTECGKA---FTRKSTLSMHQKI 34 (46)
T ss_dssp SSSSSCCEECSSSCCE---ESCHHHHHHHGGG
T ss_pred ccCCCCCeECCCCCch---hCCHHHHHHHHHH
Confidence 3346778999999733 5566778788543
No 315
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=37.37 E-value=16 Score=26.76 Aligned_cols=24 Identities=21% Similarity=0.567 Sum_probs=17.4
Q ss_pred cCCeeeccCCCCCCccccChHHHHhhh
Q 008199 37 SDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 37 ~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
+..+|.||+|+.. +..-..|..|-
T Consensus 37 ~~~~~~C~~C~k~---f~~~~~L~~H~ 60 (66)
T 2drp_A 37 NVKVYPCPFCFKE---FTRKDNMTAHV 60 (66)
T ss_dssp SCCCEECTTTCCE---ESCHHHHHHHH
T ss_pred CCcCeECCCCCCc---cCCHHHHHHHH
Confidence 5678999999743 55566777774
No 316
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.08 E-value=18 Score=24.67 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=20.3
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhhhc
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHASG 65 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~g 65 (574)
+-....+|.|+.|+.. +.....|..|...
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2ytq_A 6 SGAGEKPYGCSECGKA---FSSKSYLIIHMRT 34 (46)
T ss_dssp CSSCCCSCBCSSSCCB---CSCHHHHHHHHTT
T ss_pred CcCCCCCcCCCccChh---hCChHHHHHHHHH
Confidence 3346778999999743 5566778888543
No 317
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=36.95 E-value=1.3e+02 Score=24.98 Aligned_cols=63 Identities=21% Similarity=0.278 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCC--CchHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 008199 394 KKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDD--GDIEVLQKMETVLKDLREKEGELDDLEAL 466 (574)
Q Consensus 394 krEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~VmKhm~~~--~d~~~~~k~~~l~~~L~ek~~el~~~e~l 466 (574)
+||-+.+-.+|-+| |-+|..|...|.-----..| .-.++...++++..+|....+....|+++
T Consensus 21 qrEle~le~~Ie~L----------E~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~ 85 (89)
T 2lw1_A 21 QRELEQLPQLLEDL----------EAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEAL 85 (89)
T ss_dssp HHHHHHHHHHHHHH----------HHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666554 44455555544311000000 01233455666677777777766665544
No 318
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=36.86 E-value=41 Score=28.88 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=24.5
Q ss_pred CchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCC
Q 008199 143 SGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKD 181 (574)
Q Consensus 143 s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~d 181 (574)
+...|++.|+. |.++.-..+- ...|+|.|.|...
T Consensus 50 te~~L~~~F~~--~G~I~~v~i~---~~kg~aFV~f~~~ 83 (121)
T 2bz2_A 50 TPTLLRGAFSP--FGNIIDLSMD---PPRNCAFVTYEKM 83 (121)
T ss_dssp CHHHHHHHHST--TCCCSCEEEE---TTTTEEEEECSSH
T ss_pred CHHHHHHHHHc--cCCEEEEEEe---CCCCEEEEEECCH
Confidence 67889999999 7665433331 4678999999763
No 319
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=43.06 E-value=7.3 Score=23.59 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=14.5
Q ss_pred CeeeccCCCCCCccccChHHHHhhh
Q 008199 39 EAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 39 ~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
.+|.|+.|+.. +.....|..|-
T Consensus 2 k~~~C~~C~k~---f~~~~~l~~H~ 23 (30)
T 2lvr_A 2 KPYVCIHCQRQ---FADPGALQRHV 23 (30)
Confidence 47999999733 44455566664
No 320
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=42.91 E-value=7.3 Score=23.13 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=13.6
Q ss_pred eeeccCCCCCCccccChHHHHhhh
Q 008199 40 AFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 40 ~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
+|.|+.|+.. +..-..|..|-
T Consensus 2 p~~C~~C~k~---f~~~~~l~~H~ 22 (26)
T 2lvu_A 2 PYVCERCGKR---FVQSSQLANHI 22 (26)
Confidence 6899999743 33445566663
No 321
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=36.62 E-value=2.1e+02 Score=24.76 Aligned_cols=82 Identities=17% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008199 328 LQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQL 407 (574)
Q Consensus 328 ~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~L 407 (574)
.+|+++....+.....|...-+....-|...+.++.+-...-..|..+=.++ .=+.|-.-.++-..+..+.-+|
T Consensus 15 ~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeE------AN~MVa~ar~e~~~~e~kn~~L 88 (97)
T 2eqb_B 15 NTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDE------ANNMVADARKEKYAIEILNKRL 88 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHH
Q 008199 408 EKQLDAKQ 415 (574)
Q Consensus 408 ekqL~~kQ 415 (574)
+.||..+.
T Consensus 89 ~~qL~d~d 96 (97)
T 2eqb_B 89 TEQLREKD 96 (97)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhcc
No 322
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.59 E-value=18 Score=24.53 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=18.2
Q ss_pred eecCCeeeccCCCCCCccccChHHHHhhh
Q 008199 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 35 k~~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
-.+..+|.|+.|+.. +.....|..|-
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2emm_A 7 GTGERPHKCNECGKS---FIQSAHLIQHQ 32 (46)
T ss_dssp SSCCCSEECSSSCCE---ESSHHHHHHHH
T ss_pred cCCCCCeeCCCCChh---hCCHHHHHHHH
Confidence 345778999999733 55566677774
No 323
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=36.57 E-value=18 Score=25.68 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=18.8
Q ss_pred cCCeeeccCCCCCCccccChHHHHhhhhc
Q 008199 37 SDEAFTCPYCPKKRKQEYLYKDLLQHASG 65 (574)
Q Consensus 37 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~g 65 (574)
+..+|.||.|+.. +.....|..|-..
T Consensus 26 ~~~~~~C~~C~~~---f~~~~~l~~H~~~ 51 (57)
T 1bbo_A 26 DVRPYHCTYCNFS---FKTKGNLTKHMKS 51 (57)
T ss_dssp SCCCEECSSSSCE---ESSHHHHHHHHHS
T ss_pred CCCCccCCCCCch---hcCHHHHHHHHHH
Confidence 4578999999733 5566778888643
No 324
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.45 E-value=19 Score=24.51 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=19.2
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
..+.+|.|+.|+.. +.....|..|-.
T Consensus 8 ~~~~~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ep0_A 8 TGEKPYKCDVCHKS---FRYGSSLTVHQR 33 (46)
T ss_dssp TTCCSEECSSSCCE---ESSHHHHHHHHT
T ss_pred CCCCCeeCcccCcc---cCChHHHHHHHH
Confidence 45778999999733 556677888854
No 325
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.38 E-value=33 Score=29.53 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=33.6
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCCCceeEEEeeCCC
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRGHSGCAVVEFHKD 181 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~Gh~g~aIV~F~~d 181 (574)
++++.|-|+|. ..+...|++.|+. |.+ ..|+.+.+ .|+|.|+|...
T Consensus 16 ~~~LfV~nLp~---------~vte~dL~~lF~~--fG~V~~v~i~~~----kGfaFVeF~~~ 62 (105)
T 1sjq_A 16 SRVIHIRKLPI---------DVTEGEVISLGLP--FGKVTNLLMLKG----KNQAFIEMNTE 62 (105)
T ss_dssp CCEEEECSCCT---------TSCHHHHHHHHHH--HCCEEEEEEETT----TTEEEEEESSH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEcC----CCEEEEEECCH
Confidence 35667889985 3477889999999 765 34444432 68999999863
No 326
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=36.20 E-value=18 Score=25.99 Aligned_cols=24 Identities=21% Similarity=0.508 Sum_probs=17.8
Q ss_pred cCCeeeccCCCCCCccccChHHHHhhh
Q 008199 37 SDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 37 ~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
+..+|.||.|+.. +.....|..|-
T Consensus 27 ~~~~~~C~~C~~~---f~~~~~l~~H~ 50 (60)
T 2adr_A 27 NEKPYPCGLCNRA---FTRRDLLIRHA 50 (60)
T ss_dssp SSCSEECTTTCCE---ESSHHHHHHHH
T ss_pred CCCCccCCCCCCc---cCCHHHHHHHH
Confidence 4568999999743 55667788884
No 327
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=36.19 E-value=20 Score=24.36 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=19.5
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+-.+..+|.|+.|+.. +..-..|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2em0_A 6 SGMGEKTWKCRECDMC---FSQASSLRLHQN 33 (46)
T ss_dssp CSCCCCCCCCSSSCCC---CSSHHHHHHHGG
T ss_pred ccCCCcCeECCCCCcc---cCCHHHHHHHHH
Confidence 3346778999999743 556667777753
No 328
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.90 E-value=17 Score=24.69 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=19.4
Q ss_pred eecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 35 k~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
-.+..+|.|+.|+.. +.....|..|-.
T Consensus 7 H~~~~~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ytg_A 7 GTGEKPFKCGECGKS---YNQRVHLTQHQR 33 (46)
T ss_dssp CSSCCSEECTTTCCE---ESSSHHHHTTGG
T ss_pred CCCCCCeECCCCCcc---cCCHHHHHHHHH
Confidence 346778999999733 556677888854
No 329
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.70 E-value=19 Score=24.44 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=19.8
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+-.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ytr_A 6 SGTGEKPYKCNECGKA---FSQTSKLARHQR 33 (46)
T ss_dssp CCSSCCTTCCTTTCCC---CSSHHHHHHHHT
T ss_pred CCCCCcCcCCCCCCCc---cCCHHHHHHHHH
Confidence 3346778999999743 556667888854
No 330
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=35.68 E-value=22 Score=28.25 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=33.9
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChhhhHhHHH
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw~Gf~nA~~ 190 (574)
.+.|-|+|. ..+...|++.|+. |....++. + .+.|++.|.|.+. ..-..|+.
T Consensus 7 ~l~V~nLp~---------~~t~~~l~~~F~~--~~v~~~~i---~-~~~g~afV~f~~~-~~a~~Ai~ 58 (88)
T 1wg1_A 7 GILVKNLPQ---------DSNCQEVHDLLKD--YDLKYCYV---D-RNKRTAFVTLLNG-EQAQNAIQ 58 (88)
T ss_dssp CEEEESCCS---------SCCHHHHHHHTCS--SCCCCEEE---E-GGGTEEEECCSCH-HHHHHHHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHhh--CCeEEEEE---e-CCCcEEEEEECCH-HHHHHHHH
Confidence 456788886 3467889999988 83333333 1 5678999999753 33334433
No 331
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.60 E-value=17 Score=24.81 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=17.7
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
....+|.|+.|+.. +.....|..|-
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2ytt_A 8 EGEKPYQCSECGKS---FSGSYRLTQHW 32 (46)
T ss_dssp SCCCTTCCSSSCCC---CSSHHHHHHHH
T ss_pred CCCCCeeCCCCCcc---cCCHHHHHHHH
Confidence 45678999999743 55566677774
No 332
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=35.44 E-value=42 Score=30.28 Aligned_cols=48 Identities=15% Similarity=0.193 Sum_probs=35.1
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCC-C-CCceeEEEeeCC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNF-R-GHSGCAVVEFHK 180 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~-~-Gh~g~aIV~F~~ 180 (574)
-++.|-|++. ..+...|++.|+. |.+ ..++...++ . .+.|++.|.|.+
T Consensus 126 ~~l~v~nlp~---------~~t~~~l~~~f~~--~G~v~~v~i~~~~~~g~~~g~afV~F~~ 176 (216)
T 2qfj_A 126 NRIYVASVHQ---------DLSDDDIKSVFEA--FGKIKSATLARDPTTGKHKGYGFIEYEK 176 (216)
T ss_dssp CEEEEECCCT---------TCCHHHHHHHHTT--SSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred cEEEEeCCCC---------cCCHHHHHHHHhc--cCCeeEEEEEecCCCCCcCceEEEEecC
Confidence 4677889986 3467899999999 765 455555553 2 358999999976
No 333
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=35.32 E-value=21 Score=24.31 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=18.0
Q ss_pred eecCCeeeccCCCCCCccccChHHHHhhh
Q 008199 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 35 k~~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
-.+..+|.|+.|+.. +..-..|..|-
T Consensus 7 H~~~k~~~C~~C~k~---F~~~~~L~~H~ 32 (46)
T 2emk_A 7 GTGEKPYECKECGKA---FSQTTHLIQHQ 32 (46)
T ss_dssp CSSSCSCBCSSSCCB---CSCHHHHHHHH
T ss_pred cCCCCceECCCCCch---hCCHHHHHHHH
Confidence 345678999999743 55556676774
No 334
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=35.31 E-value=38 Score=32.47 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=40.3
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCC---CcccccccCC-CC-CceeEEEeeCCChhhhHhHHH
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFN---PTRVHPLWNF-RG-HSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~---p~kv~~l~~~-~G-h~g~aIV~F~~dw~Gf~nA~~ 190 (574)
..+.|-|++. ..+...|++.|+. |. ...|+.+.+. .| ..||+.|.|.+.-. -..|+.
T Consensus 69 ~~lfVgnL~~---------~~te~~L~~~F~~--~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~-a~~Ai~ 130 (229)
T 3q2s_C 69 IALYIGNLTW---------WTTDEDLTEAVHS--LGVNDILEIKFFENRANGQSKGFALVGVGSEAS-SKKLMD 130 (229)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHHHT--TTCCCEEEEEEEECTTTCCEEEEEEEEESCTTH-HHHHHT
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHH--HCCcceEEEEEEecCCCCccceEEEEEECCHHH-HHHHHH
Confidence 3566889886 3467889999999 65 5667777664 23 67999999987643 344544
No 335
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=35.23 E-value=20 Score=24.48 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=19.1
Q ss_pred eecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 35 k~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
-.+..+|.|+.|+.. +.....|..|-.
T Consensus 7 h~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2el6_A 7 GAGVNPYKCSQCEKS---FSGKLRLLVHQR 33 (46)
T ss_dssp SCCCCSEECSSSSCE---ESSHHHHHHHHG
T ss_pred CCCCCCeECCCCCcc---cCCHHHHHHHHH
Confidence 345678999999733 555667778854
No 336
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.22 E-value=19 Score=24.39 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=19.4
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+-.+..+|.|+.|+.. +..-..|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eq4_A 6 SGTGEKLYNCKECGKS---FSRAPCLLKHER 33 (46)
T ss_dssp CSSCCCCCCBTTTTBC---CSCHHHHHHHHH
T ss_pred cCCCCCCeECCCCCCc---cCchHHHHHHHH
Confidence 3346778999999743 555667777754
No 337
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=34.85 E-value=20 Score=25.60 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=17.6
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
.++.+|.|+.|+.. +..-..|..|-
T Consensus 20 ~~~k~~~C~~C~k~---f~~~~~L~~H~ 44 (54)
T 1yui_A 20 QSEQPATCPICYAV---IRQSRNLRRHL 44 (54)
T ss_dssp TSSCCEECTTTCCE---ESSHHHHHHHH
T ss_pred CCCCCccCCCCCcc---cCCHHHHHHHH
Confidence 45678999999733 55556677774
No 338
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=34.69 E-value=19 Score=27.07 Aligned_cols=25 Identities=20% Similarity=0.442 Sum_probs=17.8
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
....+|.||.|... +.....|..|-
T Consensus 38 ~~~~~~~C~~C~~~---f~~~~~L~~H~ 62 (72)
T 1x6e_A 38 TGEKPYKCLECGKA---FSQNSGLINHQ 62 (72)
T ss_dssp GCSCCEECSSSCCE---ESSHHHHHHHH
T ss_pred CCCCCeECCCCCcc---cCCHHHHHHHH
Confidence 34678999999743 55566777774
No 339
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=40.95 E-value=8.2 Score=23.38 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=13.7
Q ss_pred eeeccCCCCCCccccChHHHHhhh
Q 008199 40 AFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 40 ~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
+|.|+.|+.. +.....|..|-
T Consensus 2 ~~~C~~C~k~---f~~~~~l~~H~ 22 (29)
T 2lvt_A 2 PCQCVMCGKA---FTQASSLIAHV 22 (29)
Confidence 6899999743 33445566663
No 340
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=34.64 E-value=33 Score=32.88 Aligned_cols=51 Identities=22% Similarity=0.187 Sum_probs=37.6
Q ss_pred cceEEEeeccccccCCCccccc-CchhHHHHHHhcCCCC-cccccccCCCCC-ceeEEEeeCCCh
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGE-SGSKLRDELIRRGFNP-TRVHPLWNFRGH-SGCAVVEFHKDW 182 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~-s~~~L~~~l~~~GF~p-~kv~~l~~~~Gh-~g~aIV~F~~dw 182 (574)
+.++.|-|+|. .. +...|++.|+. |.+ ..++...++.|. +|++.|.|.+.-
T Consensus 184 ~~~l~v~nlp~---------~~~~~~~l~~~f~~--~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 237 (284)
T 3smz_A 184 SRCLCVDRLPP---------GFNDVDALCRALSA--VHSPTFCQLACGQDGQLKGFAVLEYETAE 237 (284)
T ss_dssp CSEEEEECCCT---------TCCCHHHHHHHTCS--SSCCSEEEEEECSSCCEEEEEEEECSSHH
T ss_pred ccEEEEecCCc---------ccCCHHHHHHHhhC--CCCeEEEEEEECCCCCcccEEEEEeCCHH
Confidence 45677889986 22 45889999998 765 466666666674 899999998653
No 341
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.62 E-value=20 Score=24.37 Aligned_cols=26 Identities=23% Similarity=0.453 Sum_probs=17.7
Q ss_pred eecCCeeeccCCCCCCccccChHHHHhhh
Q 008199 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 35 k~~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
-.+..+|.|+.|+.. +.....|..|-
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2emp_A 7 GTGVKPYMCNECGKA---FSVYSSLTTHQ 32 (46)
T ss_dssp SSCCCSEECSSSCCE---ESCHHHHHHHH
T ss_pred cCCCcCeECCCCCch---hCCHHHHHHHH
Confidence 345678999999743 45556666664
No 342
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=34.55 E-value=1.5e+02 Score=26.62 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 008199 444 QKMETVLKDLREKEGELDDLEALNQTLI 471 (574)
Q Consensus 444 ~k~~~l~~~L~ek~~el~~~e~lnq~Li 471 (574)
..|..|+.+|++..++++.+-.-|+.|-
T Consensus 78 gEI~~Lnq~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 78 GEITTLNHKLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 3455666666666666666666665554
No 343
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=34.53 E-value=33 Score=29.67 Aligned_cols=87 Identities=13% Similarity=-0.024 Sum_probs=50.5
Q ss_pred eEEEeecccccc-CCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChhhhHhHHHHHHHhhhcCCC
Q 008199 123 TGIVVNIPTRRA-EDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKAYEADHYG 201 (574)
Q Consensus 123 mgIi~N~~t~e~-~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw~Gf~nA~~fe~~Fe~~~~G 201 (574)
+++|.|+.+.+. .|..+...--..|++.|+. |.++.-..+. .....|++.|.|...-. |.+--..+. |+
T Consensus 9 vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~k--fG~V~~v~i~-~~~~~G~~fV~f~~~e~----A~~Ai~~ln--G~- 78 (114)
T 3s6e_A 9 CFQLSNMFNPQTEEEVGWDTEIKDDVIEECNK--HGGVIHIYVD-KNSAQGNVYVKCPSIAA----AIAAVNALH--GR- 78 (114)
T ss_dssp EEEEESSCCTTTCCSTTHHHHHHHHHHHHHTT--TTCCSEEEEC-TTCTTCCEEEECSSHHH----HHHHHHHHT--TC-
T ss_pred EEEEECCCChHHccChhHHHHHHHHHHHHHhc--cCCEEEEEEe-cCCCcEEEEEEECCHHH----HHHHHHHhC--CC-
Confidence 588999987222 3444444445678888998 7654332232 22347999999987432 222222222 11
Q ss_pred hhhhhhhccCCCcceeeeeccCCCC
Q 008199 202 KKDWYASNQEKSGLYAWVARSDDYN 226 (574)
Q Consensus 202 KkdW~~~~~~~~~LYGwvAradD~~ 226 (574)
| ..|+.|+--.+..++|.
T Consensus 79 ---~----f~GR~i~v~~~~~~~y~ 96 (114)
T 3s6e_A 79 ---W----FAGKMITAAYVPLPTYH 96 (114)
T ss_dssp ---E----ETTEECEEEEECHHHHH
T ss_pred ---E----ECCEEEEEEEEcHHHHH
Confidence 1 23567777777777774
No 344
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=33.99 E-value=2.9e+02 Score=25.67 Aligned_cols=63 Identities=13% Similarity=0.092 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 008199 388 KLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALN 467 (574)
Q Consensus 388 kLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~ln 467 (574)
..+..-+.|...+..+|.+|+..|..|.++-- .+...+..|+-++..-++.+..++.-|
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e---------------------~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTE---------------------RLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666667777778888888877777765421 123334444555555555555555556
Q ss_pred HHHH
Q 008199 468 QTLI 471 (574)
Q Consensus 468 q~Li 471 (574)
+.||
T Consensus 127 ~~LV 130 (152)
T 3a7p_A 127 SQLV 130 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 345
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=33.88 E-value=22 Score=24.16 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=18.5
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
.+..+|.|+.|+.. +..-..|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ema_A 8 TGEKRYKCNECGKV---FSRNSQLSQHQK 33 (46)
T ss_dssp TTSCCEECSSSCCE---ESSHHHHHHHHT
T ss_pred CCCcCcCCCCCcch---hCCHHHHHHHHH
Confidence 45678999999733 556667777743
No 346
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=33.60 E-value=28 Score=29.62 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=14.9
Q ss_pred ceEeecCCeeeccCCCCCCccccChHHHHhhhhcC
Q 008199 32 HSVKISDEAFTCPYCPKKRKQEYLYKDLLQHASGV 66 (574)
Q Consensus 32 ~kVk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~gv 66 (574)
+.|+...+.|+|-.|+.+ .+.=+|+++-.|.
T Consensus 50 f~V~~~k~~~~Cf~cg~g----Gd~i~fv~~~~~~ 80 (103)
T 1d0q_A 50 FSVSPEKQIFHCFGCGAG----GNAFTFLMDIEGI 80 (103)
T ss_dssp EEEETTTTEEEETTTCCE----ECHHHHHHHHHTC
T ss_pred EEEEcCCCEEEECCCCCC----CCHHHHHHHHhCC
Confidence 444444445555555421 2444566665553
No 347
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=33.44 E-value=43 Score=26.95 Aligned_cols=43 Identities=12% Similarity=0.190 Sum_probs=30.4
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCC
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHK 180 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~ 180 (574)
.+.|-|+|. + ..+...|++.|+. |.++....+ +.|++.|.|.+
T Consensus 12 ~l~V~nlp~-~-------~~t~~~l~~~F~~--~G~v~~v~i-----~~g~afV~f~~ 54 (96)
T 2kvi_A 12 RLFIGNLPL-K-------NVSKEDLFRIFSP--YGHIMQINI-----KNAFGFIQFDN 54 (96)
T ss_dssp EEEEESSTT-S-------CCCHHHHHHHHTT--TCCCCEEEE-----ETTEEEEEESC
T ss_pred EEEEeCCCc-c-------cCCHHHHHHHHHh--cCCEEEEEE-----eCCEEEEEECC
Confidence 355778872 0 2467889999999 776544444 36899999986
No 348
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.36 E-value=18 Score=24.57 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=19.1
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+-.+..+|.|+.|+. .+..-..|..|-.
T Consensus 6 ~H~~~~~~~C~~C~k---~f~~~~~L~~H~~ 33 (46)
T 2en6_A 6 SGSGEKPYGCNECGK---TFSQKSILSAHQR 33 (46)
T ss_dssp CCCSSCCEEETTTTE---EESSHHHHHHHHH
T ss_pred ccCCCcCeECCCCCc---ccCchHHHHHHHH
Confidence 345678899999973 3555666777743
No 349
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.29 E-value=32 Score=28.91 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=32.2
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCCCceeEEEeeCCC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRGHSGCAVVEFHKD 181 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~Gh~g~aIV~F~~d 181 (574)
.++.|-|+|. ..+...|++.|+. |..+ .|..+. + .|+|.|+|...
T Consensus 16 ~~l~V~nLp~---------~~te~~L~~~F~~--fG~v~~v~i~~---~-kg~aFVef~~~ 61 (101)
T 2cq1_A 16 RVLHIRKLPG---------EVTETEVIALGLP--FGKVTNILMLK---G-KNQAFLELATE 61 (101)
T ss_dssp SEEEEESCCT---------TCCHHHHHHTTTT--TSCEEEEEEET---T-TTEEEEEESSH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEC---C-CCEEEEEECCH
Confidence 3566789985 4577889999998 7654 343332 2 78999999864
No 350
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=33.19 E-value=3.1e+02 Score=25.80 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhch
Q 008199 255 QNLLVSNLTNMIEVKDKHLEEMKERFTETS 284 (574)
Q Consensus 255 ~~~lv~~L~n~i~~kn~~l~elE~k~~e~s 284 (574)
..+.+..+.++...+.+.-..|=+.|+.++
T Consensus 15 v~~~L~e~h~qy~~ks~~yd~l~e~y~r~s 44 (170)
T 3l4q_C 15 VGAQLKVYHQQYQDKSREYDQLYEEYTRTS 44 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444444455555554444444444443
No 351
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.81 E-value=23 Score=24.01 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=18.2
Q ss_pred eecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 35 k~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
-.+..+|.|+.|+.. +..-..|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ytd_A 7 GSGEKPYKCSECGKA---FHRHTHLNEHRR 33 (46)
T ss_dssp SCCCCSEECSSSCCE---ESSHHHHHHHHH
T ss_pred cCCCcCeECCCCCCe---eCChHHHHHHHH
Confidence 345678999999743 445566777743
No 352
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=32.71 E-value=22 Score=26.59 Aligned_cols=10 Identities=30% Similarity=0.946 Sum_probs=5.2
Q ss_pred CCeeeccCCC
Q 008199 38 DEAFTCPYCP 47 (574)
Q Consensus 38 ~~~~~CP~C~ 47 (574)
..+|.||.|+
T Consensus 47 ~~~~~C~~C~ 56 (73)
T 1f2i_G 47 QKPFQCRICM 56 (73)
T ss_dssp CCCEECTTTC
T ss_pred CCCeECCCCC
Confidence 3445555554
No 353
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=32.07 E-value=98 Score=30.15 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcc
Q 008199 396 QKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHM 434 (574)
Q Consensus 396 Eke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~VmKhm 434 (574)
|.+.||..|.+|+.++ ..|.-|+++|+...++.+||
T Consensus 116 EN~~Lh~~ie~l~eEi---~~LkeEn~eLkeLae~~q~l 151 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEI---ARLKKENKELAEVAEHVQYM 151 (209)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433332 25677777777777777776
No 354
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.98 E-value=17 Score=24.68 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=19.5
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+-.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~~~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2eoe_A 6 SGTGEKPYKCNECGKV---FTQNSHLANHQR 33 (46)
T ss_dssp CCCCCCSSEETTTTEE---CSSHHHHHHHHG
T ss_pred CCCCCCCeECCCcChh---hCCHHHHHHHHH
Confidence 3346778999999733 556667777854
No 355
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=31.94 E-value=13 Score=31.48 Aligned_cols=14 Identities=36% Similarity=1.089 Sum_probs=11.2
Q ss_pred ecCCeeeccCCCCC
Q 008199 36 ISDEAFTCPYCPKK 49 (574)
Q Consensus 36 ~~~~~~~CP~C~gk 49 (574)
..+.+|.||||...
T Consensus 19 ~L~t~F~CPfCnh~ 32 (85)
T 1wii_A 19 TLETQFTCPFCNHE 32 (85)
T ss_dssp CCSSCCCCTTTCCS
T ss_pred CCCCeEcCCCCCCC
Confidence 45689999999854
No 356
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=31.93 E-value=1.3e+02 Score=27.93 Aligned_cols=94 Identities=14% Similarity=0.209 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008199 324 EKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNR 403 (574)
Q Consensus 324 ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~k 403 (574)
+++..+|.++...+|.-+.+|+- +-+++..|.++... +.+.-...+| -.+ +-..=..|+...+.+
T Consensus 28 e~l~~~l~~~i~q~d~elqQLef-------q~kr~~~e~~~q~~--~~~~p~~~~q---i~~---iq~q~~~ek~~r~e~ 92 (150)
T 4dci_A 28 EEAEREISNGIANADQQLAQLEQ-------EGQTVVDQVRRQSA--NPLDPRVQEQ---VAN---IQQQVAGKRSELEEQ 92 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTTS--CTTCHHHHHH---HHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhccC--CCCChhHHHH---HHH---HHHHHHHHHHHHHHH
Confidence 45667788888888887777754 33333334333111 1111000000 001 111223567778888
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhhhhh
Q 008199 404 IIQLEKQLDAKQALALEIERLKGSLNVMK 432 (574)
Q Consensus 404 i~~LekqL~~kQ~LELEi~qLkg~L~VmK 432 (574)
+-+|..||.+-+.|+|.-+=..|+++-+=
T Consensus 93 k~~l~~ql~qv~~L~lGsEv~qg~vE~~v 121 (150)
T 4dci_A 93 KRNLLQQQAQVRELEMDQIVEQGQLESSC 121 (150)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEEEEECC
T ss_pred HHHHHHHHHHHhcCCCcCEEeeceeeEEE
Confidence 89999999999999998776777766443
No 357
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=31.52 E-value=1.1e+02 Score=25.08 Aligned_cols=46 Identities=24% Similarity=0.265 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 008199 445 KMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELIN 490 (574)
Q Consensus 445 k~~~l~~~L~ek~~el~~~e~lnq~Li~ker~sNdELqeARk~LI~ 490 (574)
.|.+|+.-|+.|.+++...+.+...|-..-..-.+++++-|.+|-+
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888888888888888888887776666666777777776643
No 358
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=31.12 E-value=3e+02 Score=24.85 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 008199 391 EDQKKQKEDLHNRIIQLEKQLD 412 (574)
Q Consensus 391 e~hkrEke~~~~ki~~LekqL~ 412 (574)
++-+++...+..+|.+||..|.
T Consensus 113 ~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 113 KELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666655554
No 359
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=37.14 E-value=10 Score=31.81 Aligned_cols=56 Identities=14% Similarity=0.104 Sum_probs=36.3
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcc---------cccccCCC--CCceeEEEeeCCChhhhHhHHH
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTR---------VHPLWNFR--GHSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~k---------v~~l~~~~--Gh~g~aIV~F~~dw~Gf~nA~~ 190 (574)
.+.|-|+|. ..+...|++.|+. |.+.. +....++. -..|+|.|.|.+.-.- ..|+.
T Consensus 9 ~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A-~~Ai~ 75 (116)
T 2lcw_A 9 TIFVQGLGE---------NVTIESVADYFKQ--IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSA-KAAID 75 (116)
Confidence 355778875 2356778899999 76655 45555533 3578999999865433 33443
No 360
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=30.47 E-value=15 Score=27.65 Aligned_cols=13 Identities=23% Similarity=0.897 Sum_probs=9.6
Q ss_pred CeeeccCCCCCCc
Q 008199 39 EAFTCPYCPKKRK 51 (574)
Q Consensus 39 ~~~~CP~C~gkkk 51 (574)
..|+||.|...+.
T Consensus 29 ~dw~CP~Cg~~k~ 41 (46)
T 6rxn_A 29 DDWCCPVCGVSKD 41 (46)
T ss_dssp TTCBCTTTCCBGG
T ss_pred CCCcCcCCCCcHH
Confidence 3599999986543
No 361
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=30.41 E-value=2.8e+02 Score=26.08 Aligned_cols=20 Identities=15% Similarity=0.154 Sum_probs=7.7
Q ss_pred HHHHHhhhcHHHHHHHHHHH
Q 008199 343 ELEKRETQNENDRKILAEEI 362 (574)
Q Consensus 343 ~L~k~~~~~~~er~kl~~e~ 362 (574)
++.++.++-..+|-++..++
T Consensus 121 Ei~~Lr~qL~~~R~k~~~em 140 (175)
T 3lay_A 121 EMESLGQKLDEQRVKRDVAM 140 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444443333
No 362
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.28 E-value=20 Score=24.33 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=19.2
Q ss_pred eecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 35 k~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
-.+..+|.|+.|+. .+.....|..|-.
T Consensus 7 H~~~~~~~C~~C~k---~f~~~~~L~~H~~ 33 (46)
T 2en1_A 7 GSGEKPFKCEECGK---RFTQNSQLHSHQR 33 (46)
T ss_dssp CCCCCSEEETTTTE---EESSHHHHHHHGG
T ss_pred CCCCCCeeCCCCCc---ccCCHHHHHHHHH
Confidence 34677899999973 3556667778854
No 363
>4f9d_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; family 4 carbohydrate esterase, TIM barrel, hydrolase, deace carbohydrate/sugar binding; HET: MES; 1.90A {Escherichia coli} PDB: 4f9j_A*
Probab=29.97 E-value=17 Score=40.74 Aligned_cols=67 Identities=15% Similarity=0.269 Sum_probs=52.6
Q ss_pred hhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChhhhHhHHHHHHHhhhcCCChhhhhhhccCCCcceeeeec
Q 008199 145 SKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKAYEADHYGKKDWYASNQEKSGLYAWVAR 221 (574)
Q Consensus 145 ~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw~Gf~nA~~fe~~Fe~~~~GKkdW~~~~~~~~~LYGwvAr 221 (574)
..|-+.+..+||+-+=+.++.+++|..-..-|-|.+.|-=. .++=.+|-.|+-.+..+-.+|+||-+
T Consensus 300 ~~li~ri~~~g~~~V~lqaf~dp~gdg~~~~~yfpn~~~p~----------~~Dlf~~v~wql~~r~~v~vyAWmp~ 366 (618)
T 4f9d_A 300 DVLIQRVKDMQISTVYLQAFADPDGDGLVKEVWFPNRLLPM----------KADIFSRVAWQLRTRSGVNIYAWMPV 366 (618)
T ss_dssp HHHHHHHHHTTCCEEEEECEECTTCSSCBCEESSCCSSSCB----------SCSCHHHHHHHHHHHHCCEEEEEECS
T ss_pred HHHHHHHHHcCCCEEEEEEEEcCCCCcccccccCCCCCcch----------hhhhHHHHHHHHhhhcCCEEEEeeeh
Confidence 45777899999999999999999988545588999988765 22333488998655567899999966
No 364
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.84 E-value=28 Score=24.21 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=17.4
Q ss_pred ecCCeeeccC--CCCCCccccChHHHHhhh
Q 008199 36 ISDEAFTCPY--CPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 36 ~~~~~~~CP~--C~gkkk~~y~~~~LLqHA 63 (574)
.++.+|.||+ |.. .+..-..|..|-
T Consensus 5 ~gekp~~C~~~~C~k---~F~~~~~L~~H~ 31 (38)
T 2eln_A 5 SSGILLKCPTDGCDY---STPDKYKLQAHL 31 (38)
T ss_dssp SCCCCEECSSSSCCC---EESCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCC---ccCCHHHHHHHH
Confidence 3567899987 973 355666777774
No 365
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=29.66 E-value=28 Score=24.90 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=17.9
Q ss_pred cCCeeeccCCCCCCccccChHHHHhhh
Q 008199 37 SDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 37 ~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
...+|.|+.|+.. +.....|..|-
T Consensus 9 ~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (54)
T 2eps_A 9 VGKPYICQSCGKG---FSRPDHLNGHI 32 (54)
T ss_dssp SSCCEECSSSCCE---ESSHHHHHHHH
T ss_pred CCCCeECCCCCcc---cCCHHHHHHHH
Confidence 4678999999743 55667788884
No 366
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=29.50 E-value=57 Score=31.09 Aligned_cols=49 Identities=16% Similarity=0.032 Sum_probs=31.9
Q ss_pred eEEEeeccccccCCCcccccCchhHH----HHHHhcCCCCcccccccCCCCCceeEEEeeCCCh
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLR----DELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDW 182 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~----~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw 182 (574)
++.|-|++. ..+...|+ +.|+. |.++.-..+....-+.|++.|.|.+.-
T Consensus 11 ~l~V~nlp~---------~~~~~~l~~~L~~~F~~--~G~i~~v~~~~~~~~~g~afV~f~~~~ 63 (282)
T 3pgw_A 11 TIYINNLNE---------KIKKDELKKSLYAIFSQ--FGQILDILVSRSLKMRGQAFVIFKEVS 63 (282)
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHHHHhc--cCCeEEEEEcCCCCcceEEEEEECCHH
Confidence 456889886 33556655 78988 765443333334447799999997543
No 367
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.41 E-value=3.3e+02 Score=24.83 Aligned_cols=43 Identities=26% Similarity=0.323 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcc
Q 008199 389 LAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHM 434 (574)
Q Consensus 389 Lve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~VmKhm 434 (574)
.|-.-.++-..+..+.-+|+.||..+..| |.-|..+|.-+||+
T Consensus 90 MVa~ar~~~~~~e~r~~~L~~ql~e~e~l---l~~lq~QL~~LK~v 132 (135)
T 2e7s_A 90 LVADARMEKYAIEILNKRLTEQLREKDML---LDTLTLQLKNLKKV 132 (135)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHTTTHHHHC---C-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 44555788889999999999999998654 55566666666653
No 368
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=29.29 E-value=20 Score=24.88 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=18.2
Q ss_pred cCCeeeccCCCCCCccccChHHHHhhh
Q 008199 37 SDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 37 ~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
.+.+|.|+.|+. .+.....|..|-
T Consensus 5 gekp~~C~~CgK---~F~~~s~L~~H~ 28 (36)
T 1fv5_A 5 KPARFMCLPCGI---AFSSPSTLEAHQ 28 (36)
T ss_dssp SCCCCEETTTTE---ECSCHHHHHHHH
T ss_pred CccCeECCCCCC---ccCCHhHccCcC
Confidence 567999999973 356677788885
No 369
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=29.18 E-value=26 Score=26.66 Aligned_cols=28 Identities=11% Similarity=0.277 Sum_probs=19.6
Q ss_pred eEeecCCeeeccCCCCCCccccChHHHHhhh
Q 008199 33 SVKISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 33 kVk~~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
++-..+.+|.|+.|+.. +.....|..|-
T Consensus 8 ~~H~~~k~~~C~~C~k~---f~~~~~L~~H~ 35 (77)
T 2ct1_A 8 RTHSGEKPYECYICHAR---FTQSGTMKMHI 35 (77)
T ss_dssp CCCSCCCSEECTTTCCE---ESCHHHHHHHH
T ss_pred cccCCCCCeECCCcCch---hCCHHHHHHHH
Confidence 44456788999999743 55566777774
No 370
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=29.09 E-value=38 Score=36.67 Aligned_cols=37 Identities=32% Similarity=0.341 Sum_probs=28.6
Q ss_pred cCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCCh
Q 008199 142 ESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDW 182 (574)
Q Consensus 142 ~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw 182 (574)
-|-.+|.++|+. |.|+.-.+.|-..| -+|||+|...-
T Consensus 64 ~~~~~l~~y~~~--~g~i~~~~~~~~~g--~~~~vef~~~~ 100 (464)
T 3pq1_A 64 ISENKFLKYLSQ--FGPINNHFFYESFG--LYAVVEFCQKE 100 (464)
T ss_dssp ---CHHHHHHGG--GSCCCCEEEECSSS--EEEEEECC---
T ss_pred CCHHHHHHHHHh--cCCcceEEEEccCC--eEEEEEeCCHH
Confidence 477899999999 99999999998777 59999999853
No 371
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=28.68 E-value=5.4e+02 Score=27.15 Aligned_cols=185 Identities=9% Similarity=0.132 Sum_probs=0.0
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 008199 282 ETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEE 361 (574)
Q Consensus 282 e~s~sL~~~meEk~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl~~e 361 (574)
....-|...+.+|-.+...|...+.+|-..++.-..+ -.+.--+..-...-+.+++..+.
T Consensus 36 ~~~~el~~f~keRa~iE~eYAk~L~kLakk~~~~~~~-~~e~gtl~~aw~~~~~e~e~~a~------------------- 95 (486)
T 3haj_A 36 RLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEK-GPQYGTVEKAWMAFMSEAERVSE------------------- 95 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SSCCSHHHHHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCccHHHHHHHHHHHHHHHHHH-------------------
Q ss_pred HHHHhhhhchhHHHHHHHHhhhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH--------hHHHHHHHHHHHhh
Q 008199 362 IEKNAMRNNSLQLASLVQQKADENVRKLAEDQ--------KKQKEDLHNRIIQLEKQL--------DAKQALALEIERLK 425 (574)
Q Consensus 362 ~~kn~~~~~~l~lA~~Eq~kade~vlkLve~h--------krEke~~~~ki~~LekqL--------~~kQ~LELEi~qLk 425 (574)
.|+++|..=+...-+.+..++.+| -++...+..-+.+++++| .+|.+.+...++.+
T Consensus 96 --------~H~~~a~~L~~~v~~~l~~~~~e~~~K~~~~~~kerK~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~e 167 (486)
T 3haj_A 96 --------LHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEK 167 (486)
T ss_dssp --------HHHHHHHHHHHTHHHHHHHHHHHHCCBCSSSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHhc
Q 008199 426 GSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELINALKEL 495 (574)
Q Consensus 426 g~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~lnq~Li~ker~sNdELqeARk~LI~~l~~~ 495 (574)
...........+...- .+.+++++.+++.....+...+.--...|.+--..+.++......+++.|.++
T Consensus 168 ~a~~~~~~a~~d~~~t-~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~l 236 (486)
T 3haj_A 168 LAISREANSKADPSLN-PEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQF 236 (486)
T ss_dssp HHHHHHHHHHHCCCSC-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 372
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=28.64 E-value=28 Score=25.94 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=17.4
Q ss_pred cCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 37 SDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 37 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
++.+|.|+.|... +.....|..|-.
T Consensus 6 ~~~~~~C~~C~k~---f~~~~~L~~H~~ 30 (70)
T 1x5w_A 6 SGHPEKCSECSYS---CSSKAALRIHER 30 (70)
T ss_dssp CCCSEECSSSSCE---ESSHHHHHHHHG
T ss_pred CCCCeECCCCCcc---cCCHHHHHHHHH
Confidence 4678999999743 455666777754
No 373
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=28.63 E-value=1.1e+02 Score=28.02 Aligned_cols=38 Identities=0% Similarity=0.116 Sum_probs=28.9
Q ss_pred ccCchhHHHHHHhcCCCC-cccccccCCCC--CceeEEEeeCC
Q 008199 141 GESGSKLRDELIRRGFNP-TRVHPLWNFRG--HSGCAVVEFHK 180 (574)
Q Consensus 141 G~s~~~L~~~l~~~GF~p-~kv~~l~~~~G--h~g~aIV~F~~ 180 (574)
..+-..|+++|+. |.+ ..+...+++.. ..|++.|+|..
T Consensus 17 ~tte~~Lk~~Fs~--fGeV~~~~li~Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 17 NIQDISIKNYFKK--YGEISHFEAFNDPNSALPLHVYLIKYAS 57 (136)
T ss_dssp CCCHHHHHHHHHT--TSCCSEEEEEECTTTCCEEEEEEEECC-
T ss_pred CCCHHHHHHHHHh--cCCeEEEEEEecCCCCceeeEEEEEECC
Confidence 3467899999999 876 56666666553 68999999996
No 374
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=28.62 E-value=62 Score=28.28 Aligned_cols=48 Identities=17% Similarity=0.005 Sum_probs=30.1
Q ss_pred eEEEeeccccccCCCcccccCchhH----HHHHHhcCCCCcccccccCCCCCceeEEEeeCCC
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKL----RDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKD 181 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L----~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~d 181 (574)
++.|-|++. ..+...| .+.|+. |.++.-..+-......|+|.|.|..-
T Consensus 31 ~LfV~nL~~---------~~~e~~L~~~L~~~F~~--~G~I~~v~i~~~~~~rG~aFV~F~~~ 82 (127)
T 2a3j_A 31 VVLITNINP---------EVPKEKLQALLYALASS--QGDILDIVVDLSDDNSGKAYIVFATQ 82 (127)
T ss_dssp EEEEESCCT---------TSCHHHHHHHHHHHHHH--HSCEEEEEECCCCSSCCCEEEEESSH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHHHhcc--CCCeEEEEeccCCCcCCEEEEEECCH
Confidence 566889885 2244444 467999 77653222222335689999999763
No 375
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.60 E-value=51 Score=28.85 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=34.1
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCCCceeEEEeeCCCh
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRGHSGCAVVEFHKDW 182 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~Gh~g~aIV~F~~dw 182 (574)
.++.|-|+|. ..+...|++.|+. |.++ .|..+.+ .|+|.|+|...-
T Consensus 32 ~~LfVgNLp~---------~vte~dL~~lF~~--fG~V~~v~i~~~----kG~AFVeF~~~e 78 (119)
T 2ad9_A 32 RVIHIRKLPI---------DVTEGEVISLGLP--FGKVTNLLMLKG----KNQAFIEMNTEE 78 (119)
T ss_dssp SEEEEESCCT---------TCCHHHHHHHHTT--TSCCCEEEEEGG----GTEEEEECSCHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEeCC----CCEEEEEECCHH
Confidence 4577889985 3467889999999 8754 4555543 689999998744
No 376
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=28.56 E-value=28 Score=24.66 Aligned_cols=20 Identities=35% Similarity=0.707 Sum_probs=15.3
Q ss_pred eeeccCCCCCCccccChHHHHhh
Q 008199 40 AFTCPYCPKKRKQEYLYKDLLQH 62 (574)
Q Consensus 40 ~~~CP~C~gkkk~~y~~~~LLqH 62 (574)
-|-||.|. ++.-....|..|
T Consensus 5 GFiCP~C~---~~l~s~~~L~~H 24 (34)
T 3mjh_B 5 GFICPQCM---KSLGSADELFKH 24 (34)
T ss_dssp EEECTTTC---CEESSHHHHHHH
T ss_pred ccCCcHHH---HHcCCHHHHHHH
Confidence 39999997 245667788887
No 377
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=28.37 E-value=19 Score=27.59 Aligned_cols=16 Identities=19% Similarity=0.679 Sum_probs=11.2
Q ss_pred CCeeeccCCCCCCccc
Q 008199 38 DEAFTCPYCPKKRKQE 53 (574)
Q Consensus 38 ~~~~~CP~C~gkkk~~ 53 (574)
-..|.||.|...+.++
T Consensus 34 P~dw~CP~Cg~~K~~F 49 (52)
T 1e8j_A 34 PDDWACPVCGASKDAF 49 (52)
T ss_dssp CTTCCCSSSCCCTTSC
T ss_pred CCCCcCCCCCCcHHHc
Confidence 3469999998655443
No 378
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=28.22 E-value=65 Score=27.41 Aligned_cols=45 Identities=22% Similarity=0.241 Sum_probs=32.1
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcc-cccccCCCCCceeEEEeeCCCh
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTR-VHPLWNFRGHSGCAVVEFHKDW 182 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~k-v~~l~~~~Gh~g~aIV~F~~dw 182 (574)
++-|-|+|. ..+..+|++.|+. |.++. |..+- ..|+|.|+|...-
T Consensus 23 ~l~V~NLp~---------~~te~~L~~lF~~--fG~V~~v~i~~----~kg~AFVef~~~~ 68 (100)
T 3r27_A 23 VVHIRGLID---------GVVEADLVEALQE--FGPISYVVVMP----KKRQALVEFEDVL 68 (100)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEET----TTTEEEEEESSHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHhc--cCCEEEEEEEc----CCCEEEEEECCHH
Confidence 466889985 3477899999999 87643 33332 3589999998643
No 379
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=28.19 E-value=30 Score=26.06 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=17.0
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
.+..+|.|+.|+.. +.....|..|-
T Consensus 13 ~~~~~~~C~~C~k~---f~~~~~l~~H~ 37 (74)
T 2lce_A 13 HSDKPYKCDRCQAS---FRYKGNLASHK 37 (74)
T ss_dssp CCCCSBCCTTSSCC---BSCHHHHHHHH
T ss_pred CCCCCeECCCCCce---eCCHHHHHHHH
Confidence 45678999999744 44455666664
No 380
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=27.95 E-value=36 Score=20.88 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=16.4
Q ss_pred Ceeecc--CCCCCCccccChHHHHhhhh
Q 008199 39 EAFTCP--YCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 39 ~~~~CP--~C~gkkk~~y~~~~LLqHA~ 64 (574)
.+|.|+ .|+.. +.....|..|-.
T Consensus 2 k~~~C~~~~C~k~---f~~~~~L~~H~~ 26 (32)
T 1zfd_A 2 RPYSCDHPGCDKA---FVRNHDLIRHKK 26 (32)
T ss_dssp CSBCCCCTTCCCC---BSSSHHHHHHHG
T ss_pred CCCcCcCCCCCCc---cCCHHHHHHHHH
Confidence 579999 89733 556677888854
No 381
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=27.94 E-value=19 Score=24.43 Aligned_cols=27 Identities=15% Similarity=0.406 Sum_probs=18.2
Q ss_pred eecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 35 k~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
-..+.+|.|+.|... +.....|..|-.
T Consensus 5 h~~~k~~~C~~C~k~---f~~~~~l~~H~~ 31 (45)
T 2epq_A 5 SSGEKPYSCPVCGLR---FKRKDRMSYHVR 31 (45)
T ss_dssp CSSCCSSEETTTTEE---CSCHHHHHHHHH
T ss_pred cCCCCCCcCCCCCcc---cCCHHHHHHHHH
Confidence 345778999999733 455566767743
No 382
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=27.45 E-value=18 Score=28.06 Aligned_cols=16 Identities=19% Similarity=0.492 Sum_probs=11.5
Q ss_pred CCeeeccCCCCCCccc
Q 008199 38 DEAFTCPYCPKKRKQE 53 (574)
Q Consensus 38 ~~~~~CP~C~gkkk~~ 53 (574)
-..|.||.|...+.++
T Consensus 34 P~dw~CP~Cga~K~~F 49 (55)
T 2v3b_B 34 PADWVCPDCGVGKIDF 49 (55)
T ss_dssp CTTCCCTTTCCCGGGE
T ss_pred CCCCcCCCCCCCHHHc
Confidence 3469999998665444
No 383
>2go8_A Hypothetical protein YQJZ; SR435, protein structure, structural genomics, PSI, protein initiative, northeast structural genomics consortium; 2.30A {Bacillus subtilis} SCOP: d.58.4.5
Probab=27.40 E-value=54 Score=29.10 Aligned_cols=100 Identities=15% Similarity=0.233 Sum_probs=45.6
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHh-cCCCCcccccccCCCCCceeEEEeeCCChhhhHhHHHHHHHhhhcC
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIR-RGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKAYEADH 199 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~-~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw~Gf~nA~~fe~~Fe~~~ 199 (574)
|||..|+.+.+ ...+..-...-+..|...+.. =||-... .+.++.| . ...|-|=.|-.-|..-.+-..|-+++.
T Consensus 11 ~pm~aViFe~~-~~~~~~~Y~~la~~~~~la~~qpGFI~~E--s~~~~dg-~-~is~SyW~deeai~aW~~~~eHr~Aq~ 85 (122)
T 2go8_A 11 PPYYAVIFSSV-KSENDTGYGETAERMVSLAADQPGFLGVE--SVREADG-R-GITVSYWDSMDAINHWRHHTEHQAAKE 85 (122)
T ss_dssp SCEEEEEEEEE-CC------CHHHHHHHHHHHHSTTEEEEE--EEECTTS-E-EEEEEEESCHHHHHHHHHHC-------
T ss_pred CCEEEEEEEEE-eCCchhHHHHHHHHHHHHHhhCCCceEEE--EEEcCCC-C-EEEEEEeCCHHHHHHHHhCHHHHHHHH
Confidence 67777766654 222211223334566664443 2554444 5666666 3 456677788888999999999999999
Q ss_pred CChhhhhhh-ccC---CCcceeeeeccCCC
Q 008199 200 YGKKDWYAS-NQE---KSGLYAWVARSDDY 225 (574)
Q Consensus 200 ~GKkdW~~~-~~~---~~~LYGwvAradD~ 225 (574)
.||..|... +.. --.=||+-.+..|+
T Consensus 86 ~Gr~~w~~~y~~rv~~V~r~y~~~~~~~~~ 115 (122)
T 2go8_A 86 KGRSVWYESYAVRVAKVDRQRLFQENTNDL 115 (122)
T ss_dssp ------CCEEEEEEEEECCCCCCCC-----
T ss_pred hHHHHHhccCcEEEEEEEEEecCCCCCcch
Confidence 999999863 211 23446665555555
No 384
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=27.25 E-value=18 Score=27.71 Aligned_cols=16 Identities=19% Similarity=0.706 Sum_probs=11.2
Q ss_pred CCeeeccCCCCCCccc
Q 008199 38 DEAFTCPYCPKKRKQE 53 (574)
Q Consensus 38 ~~~~~CP~C~gkkk~~ 53 (574)
-..|.||.|...+.++
T Consensus 33 P~dw~CP~Cg~~K~~F 48 (52)
T 1yk4_A 33 PDDWVCPLCGAPKSEF 48 (52)
T ss_dssp CTTCBCTTTCCBGGGE
T ss_pred CCCCcCCCCCCCHHHc
Confidence 4569999998654443
No 385
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=27.17 E-value=28 Score=27.26 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=18.1
Q ss_pred cCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 37 SDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 37 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+.++|.|+.|+.. +.....|..|-.
T Consensus 5 ~~~~~~C~~C~~~---f~~~~~l~~H~~ 29 (96)
T 2dmd_A 5 SSGPHKCEVCGKC---FSRKDKLKTHMR 29 (96)
T ss_dssp CCCCCCBTTTTBC---CCCHHHHHHHGG
T ss_pred CCcCeECCCCCCc---cCCHHHHHHHHH
Confidence 5678999999733 556677888854
No 386
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=27.13 E-value=25 Score=24.35 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=18.8
Q ss_pred cCCeeeccCCCCCCccccChHHHHhhhhc
Q 008199 37 SDEAFTCPYCPKKRKQEYLYKDLLQHASG 65 (574)
Q Consensus 37 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~g 65 (574)
...+|.|+.|.. .+.....|..|-..
T Consensus 9 ~~k~~~C~~C~k---~f~~~~~L~~H~~~ 34 (48)
T 2epr_A 9 TRKQVACEICGK---IFRDVYHLNRHKLS 34 (48)
T ss_dssp CCCSEEETTTTE---EESSHHHHHHHGGG
T ss_pred CCcCeeCCCCCc---ccCCHHHHHHHHHh
Confidence 567899999973 35566778888543
No 387
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=27.10 E-value=3.1e+02 Score=24.70 Aligned_cols=10 Identities=10% Similarity=0.298 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 008199 329 QLESQKKELE 338 (574)
Q Consensus 329 eLe~k~~eL~ 338 (574)
.|+.+|++|.
T Consensus 36 ~vd~km~ei~ 45 (138)
T 3hnw_A 36 YINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 3444555444
No 388
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=26.82 E-value=19 Score=28.00 Aligned_cols=16 Identities=19% Similarity=0.677 Sum_probs=11.3
Q ss_pred CCeeeccCCCCCCccc
Q 008199 38 DEAFTCPYCPKKRKQE 53 (574)
Q Consensus 38 ~~~~~CP~C~gkkk~~ 53 (574)
-..|.||.|...|.++
T Consensus 34 P~dw~CP~Cg~~K~~F 49 (54)
T 4rxn_A 34 PDDWVCPLCGVGKDEF 49 (54)
T ss_dssp CTTCBCTTTCCBGGGE
T ss_pred CCCCcCcCCCCcHHHc
Confidence 3459999998665444
No 389
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=26.56 E-value=3e+02 Score=29.87 Aligned_cols=30 Identities=17% Similarity=0.429 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhc-cCCcccc---------eeecCCC
Q 008199 480 ELQDARKELINALKEL-SGRAHIG---------LKRMGEL 509 (574)
Q Consensus 480 ELqeARk~LI~~l~~~-~~~~~Ig---------iKrmGeL 509 (574)
++++....++..+.++ ...++|| |++-|+.
T Consensus 129 ~~~~~~~~~l~~iPN~~~~~vP~g~~e~~~n~~v~~~g~~ 168 (484)
T 3lss_A 129 QLEEERDKLMLNVGNILHESVPIAQDEETGNTVVRTFGNT 168 (484)
T ss_dssp HHHHHHHHHHTTCCCCCCTTSCCCSCHHHHCEEEEEESCT
T ss_pred HHHHHHHHHHHhCCCCCCccCCCCCCcccCcEEEEecCCC
Confidence 4555555566666666 4444555 8888864
No 390
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.50 E-value=33 Score=26.03 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=15.0
Q ss_pred cCCeeeccCCCCCCccccChHHHHhh
Q 008199 37 SDEAFTCPYCPKKRKQEYLYKDLLQH 62 (574)
Q Consensus 37 ~~~~~~CP~C~gkkk~~y~~~~LLqH 62 (574)
...+|.|+.|... +.....|..|
T Consensus 4 ~~k~~~C~~C~k~---f~~~~~L~~H 26 (78)
T 2d9h_A 4 GSSGLQCEICGFT---CRQKASLNWH 26 (78)
T ss_dssp SCCCEECSSSCCE---ESSHHHHHHH
T ss_pred CCcCeECCCCCCe---eCCHHHHHHH
Confidence 5678999999743 4444555555
No 391
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=26.41 E-value=30 Score=26.43 Aligned_cols=26 Identities=19% Similarity=0.292 Sum_probs=19.6
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
.++.+|.|+.|+.. +.....|..|-.
T Consensus 28 t~ekp~~C~~C~k~---F~~~~~L~~H~~ 53 (60)
T 4gzn_C 28 LGYRPRSCPECGKC---FRDQSEVNRHLK 53 (60)
T ss_dssp HTCCCEECTTTCCE---ESSHHHHHHHGG
T ss_pred CCCcCeECCCCCCC---cCCHHHHHHHhC
Confidence 46789999999743 666777888853
No 392
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=26.30 E-value=19 Score=30.23 Aligned_cols=15 Identities=20% Similarity=0.727 Sum_probs=10.9
Q ss_pred CeeeccCCCCCCccc
Q 008199 39 EAFTCPYCPKKRKQE 53 (574)
Q Consensus 39 ~~~~CP~C~gkkk~~ 53 (574)
..|.||.|...+.++
T Consensus 59 ddW~CPvCga~K~~F 73 (81)
T 2kn9_A 59 DDWSCPDCGAAKSDF 73 (81)
T ss_dssp TTCCCTTTCCCGGGE
T ss_pred CCCcCCCCCCCHHHc
Confidence 459999998655444
No 393
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=26.21 E-value=30 Score=28.27 Aligned_cols=25 Identities=32% Similarity=0.716 Sum_probs=17.2
Q ss_pred ecCCeeeccCCCCCCccccChHHHHhhh
Q 008199 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
.++.+|.|++|+. .+.....|..|-
T Consensus 52 ~~~k~~~C~~C~k---~F~~~~~L~~H~ 76 (85)
T 2lv2_A 52 HAAQVFPCKYCPA---TFYSSPGLTRHI 76 (85)
T ss_dssp SCSSSEECTTSSC---EESSHHHHHHHH
T ss_pred cCCCccCCCCCCC---EeCCHHHHHHhC
Confidence 3566788888863 356667777884
No 394
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=26.18 E-value=17 Score=31.07 Aligned_cols=13 Identities=31% Similarity=0.846 Sum_probs=10.0
Q ss_pred CeeeccCCCCCCc
Q 008199 39 EAFTCPYCPKKRK 51 (574)
Q Consensus 39 ~~~~CP~C~gkkk 51 (574)
..+|||.|++-.=
T Consensus 22 ~~LRCpvCqnqsI 34 (90)
T 2kw0_A 22 EELRCPKCQNNSI 34 (90)
T ss_dssp HSSBCSCTTSCTT
T ss_pred HcCcCCCCCCCch
Confidence 4589999997543
No 395
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=26.09 E-value=19 Score=30.45 Aligned_cols=13 Identities=23% Similarity=0.812 Sum_probs=10.0
Q ss_pred CeeeccCCCCCCc
Q 008199 39 EAFTCPYCPKKRK 51 (574)
Q Consensus 39 ~~~~CP~C~gkkk 51 (574)
..+|||.|++-.=
T Consensus 25 ~~LRCp~Cqnqsi 37 (84)
T 2hl7_A 25 QELRCPKCQNQDI 37 (84)
T ss_dssp HHEECTTSSSCBT
T ss_pred HcCcCCCCCCCch
Confidence 4689999997543
No 396
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=25.80 E-value=34 Score=25.77 Aligned_cols=9 Identities=22% Similarity=0.800 Sum_probs=4.4
Q ss_pred CeeeccCCC
Q 008199 39 EAFTCPYCP 47 (574)
Q Consensus 39 ~~~~CP~C~ 47 (574)
.+|.||.|+
T Consensus 56 ~~~~C~~C~ 64 (82)
T 2kmk_A 56 KPHKCQVCG 64 (82)
T ss_dssp CCEECTTTS
T ss_pred CCCcCCCcc
Confidence 345555553
No 397
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.73 E-value=37 Score=26.00 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=16.1
Q ss_pred CCeeeccCCCCCCccccC-hHHHHhhh
Q 008199 38 DEAFTCPYCPKKRKQEYL-YKDLLQHA 63 (574)
Q Consensus 38 ~~~~~CP~C~gkkk~~y~-~~~LLqHA 63 (574)
.++|.||-|... |. +.+|-.|-
T Consensus 10 ~~~~~CPrCn~~----f~~~~sLr~Hm 32 (49)
T 2e72_A 10 GGRKICPRCNAQ----FRVTEALRGHM 32 (49)
T ss_dssp SSCCCCTTTCCC----CSSHHHHHHHH
T ss_pred CCceeCCccccc----ccchHHHHhhh
Confidence 489999999855 55 55676664
No 398
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.65 E-value=5.8e+02 Score=26.46 Aligned_cols=22 Identities=5% Similarity=0.058 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008199 299 QSYNEEIKKIQLSARDHFQRIF 320 (574)
Q Consensus 299 ~~yneEi~kmQ~~a~~~~~rI~ 320 (574)
..|..|+.-+-+.-+++.-+++
T Consensus 324 ~eF~~Eve~L~~i~HrNLV~L~ 345 (487)
T 3oja_A 324 ETERLECERENQARQREIDALK 345 (487)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchhhHH
Confidence 4555666655555555554443
No 399
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=25.63 E-value=2.5e+02 Score=29.09 Aligned_cols=90 Identities=17% Similarity=0.198 Sum_probs=0.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHhhhhhhhhhccCC--CCchHHHHHHHHHHHHHHH
Q 008199 380 QKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQA--LALEIERLKGSLNVMKHMGD--DGDIEVLQKMETVLKDLRE 455 (574)
Q Consensus 380 ~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~--LELEi~qLkg~L~VmKhm~~--~~d~~~~~k~~~l~~~L~e 455 (574)
+.+.+.+-+++.+-+.+. ++.+.-..|++||+.-|+ +.+|-|--.-.+-||-.|.. -.-+.-.++|.||+.++..
T Consensus 376 ~~~~~~i~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (471)
T 3mq9_A 376 KDAQTRITAARDGLRAVM-EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITT 454 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHH-HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhhHHHHHHHH
Q 008199 456 KEGELDDLEALNQTL 470 (574)
Q Consensus 456 k~~el~~~e~lnq~L 470 (574)
...+|++.++-...|
T Consensus 455 ~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 455 LNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
No 400
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.21 E-value=57 Score=27.44 Aligned_cols=38 Identities=29% Similarity=0.207 Sum_probs=27.6
Q ss_pred ccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCCh
Q 008199 141 GESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDW 182 (574)
Q Consensus 141 G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw 182 (574)
+.+...|++.|+. |.++.-..+- ..+.|++.|+|...-
T Consensus 28 ~~te~~L~~~F~~--~G~V~~v~i~--~~~rGfaFVeF~~~~ 65 (100)
T 2d9o_A 28 GYSKDVLLRLLQK--YGEVLNLVLS--SKKPGTAVVEFATVK 65 (100)
T ss_dssp SCCHHHHHHHHHT--TSCEEEEEEE--SSSSSEEEEEESCHH
T ss_pred CCCHHHHHHHHHh--cCCEEEEEEc--cCCCCEEEEEECCHH
Confidence 4577899999999 8764333332 357899999998744
No 401
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=25.16 E-value=35 Score=26.22 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=11.2
Q ss_pred CCeeeccCCCCCCccccChHHHHhhh
Q 008199 38 DEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 38 ~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
..+|.||.|+.. +.....|..|-
T Consensus 60 ~~~~~C~~C~~~---f~~~~~l~~H~ 82 (90)
T 1a1h_A 60 EKPFACDICGRK---FARSDERKRHT 82 (90)
T ss_dssp CCCEECTTTCCE---ESSHHHHHHHH
T ss_pred CCCccCCCCCch---hCCHHHHHHHH
Confidence 345666666522 33444555553
No 402
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=24.98 E-value=29 Score=27.31 Aligned_cols=16 Identities=19% Similarity=0.681 Sum_probs=12.3
Q ss_pred eEeecCCeeeccCCCC
Q 008199 33 SVKISDEAFTCPYCPK 48 (574)
Q Consensus 33 kVk~~~~~~~CP~C~g 48 (574)
.|-...++|.||||..
T Consensus 26 ~~~~~~~~W~C~~C~~ 41 (59)
T 2yrc_A 26 QVDYRAKLWACNFCYQ 41 (59)
T ss_dssp EEEGGGTEEECSSSCC
T ss_pred EEECCCCEEEcccCCC
Confidence 5655567999999973
No 403
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=24.86 E-value=61 Score=28.06 Aligned_cols=57 Identities=23% Similarity=0.227 Sum_probs=33.7
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhc----CCCCc---ccccccCCCCCceeEEEeeCCChhhhHhHHH
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRR----GFNPT---RVHPLWNFRGHSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~----GF~p~---kv~~l~~~~Gh~g~aIV~F~~dw~Gf~nA~~ 190 (574)
.+.|-|+|. ..+...|++.|+.- |+... .+....- ....|+|.|.|.+. ..-..|+.
T Consensus 6 ~l~V~nLp~---------~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~-~~~~g~afV~f~~~-~~A~~A~~ 69 (172)
T 2g4b_A 6 RLYVGNIPF---------GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSV-DETTQAMA 69 (172)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-ETTTTEEEEEESSH-HHHHHHGG
T ss_pred EEEEcCCCc---------ccCHHHHHHHHHHHhhhcccccCCCCceeeeEe-cCCCCEEEEEeCCH-HHHHHHHH
Confidence 467889986 45788999999993 22110 2222221 12378999999753 33334443
No 404
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.81 E-value=35 Score=25.84 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=11.7
Q ss_pred CCeeeccCCCCCCccccChHHHHhhh
Q 008199 38 DEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 38 ~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
..+|.||.|... +.....|..|-
T Consensus 44 ~~~~~C~~C~~~---f~~~~~L~~H~ 66 (77)
T 2cot_A 44 EKPYKCDECGKA---FIQRSHLIGHH 66 (77)
T ss_dssp SCSEECSSSCCE---ESSHHHHHHHG
T ss_pred CcCeeCCCCCCc---cCCHHHHHHHH
Confidence 445666666522 33444555554
No 405
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=24.78 E-value=63 Score=30.07 Aligned_cols=48 Identities=13% Similarity=0.017 Sum_probs=32.7
Q ss_pred EEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChh
Q 008199 124 GIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWP 183 (574)
Q Consensus 124 gIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw~ 183 (574)
+.|-|++. ..+...|.+.|+. |..+.-..++.+ ...|++.|+|...-.
T Consensus 49 l~VgNL~~---------~vted~L~~~Fs~--fG~V~~V~i~~k-~~rgfAFVeF~d~~~ 96 (164)
T 1sjr_A 49 IIVENLFY---------PVTLDVLHQIFSK--FGTVLKIITFTK-NNQFQALLQYADPVS 96 (164)
T ss_dssp EEECSCCS---------CCCHHHHHHHHHH--HSCEEEEEEEES-SSCEEEEEEESCHHH
T ss_pred EEEeCcCC---------CCCHHHHHHHHHh--cCCEEEEEEEeC-CCCCEEEEEECCHHH
Confidence 55778875 3466789999999 766444444322 356899999976543
No 406
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=24.78 E-value=47 Score=31.78 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=32.7
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCCh
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDW 182 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw 182 (574)
++.|-|+|. ..+...|.+.|+. |....+.. ..+.|+|.|.|.+.-
T Consensus 24 ~l~V~nLp~---------~~te~~l~~~F~~--~Gi~~~~~----~~~~g~afV~f~~~~ 68 (284)
T 3smz_A 24 KILIRGLPG---------DVTNQEVHDLLSD--YELKYCFV----DKYKGTAFVTLLNGE 68 (284)
T ss_dssp EEEEECCCT---------TCCHHHHHHHTTT--SCEEEEEE----ETTTTEEEEEESSHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHH--cCCEEEEE----ecCCCEEEEEeCCHH
Confidence 577899986 4577889999999 64444443 345789999997643
No 407
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=24.75 E-value=1.3e+02 Score=21.67 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=16.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHH
Q 008199 318 RIFTDHEKLKLQLESQKKELEL 339 (574)
Q Consensus 318 rI~~e~ekl~~eLe~k~~eL~~ 339 (574)
.++.+|+||..+|+.|-.++-+
T Consensus 4 ~~L~ENekLhk~ie~KdeeIa~ 25 (37)
T 1t6f_A 4 EALKENEKLHKEIEQKDNEIAR 25 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999998877665543
No 408
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=24.74 E-value=41 Score=21.78 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=16.3
Q ss_pred cCCeeeccC--CCCCCccccChHHHHhhh
Q 008199 37 SDEAFTCPY--CPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 37 ~~~~~~CP~--C~gkkk~~y~~~~LLqHA 63 (574)
...+|.|++ |+.. +..-..|..|-
T Consensus 5 ~~k~~~C~~~~C~k~---f~~~~~L~~H~ 30 (37)
T 1va1_A 5 KKKQHICHIQGCGKV---YGKTSHLRAHL 30 (37)
T ss_dssp SCCCEECCSTTCCCE---ESCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCc---cCCHHHHHHHH
Confidence 457899996 9733 55556677774
No 409
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=24.59 E-value=37 Score=26.51 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=17.9
Q ss_pred cCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 37 SDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 37 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+..+|.|+.|+.. +.....|..|-.
T Consensus 4 ~~~~~~C~~C~~~---f~~~~~l~~H~~ 28 (95)
T 2yt9_A 4 GSSGVACEICGKI---FRDVYHLNRHKL 28 (95)
T ss_dssp CCSCEECSSSCCE---ESSSHHHHHHHH
T ss_pred CCCCeECCCCCCc---cCChHHHHHHHH
Confidence 4678999999733 556677777754
No 410
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=24.20 E-value=57 Score=29.40 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=25.6
Q ss_pred HhHHHHHHhhhCCC------ceEeecCCeeeccCCC
Q 008199 18 KYEDKSYKKLKSGN------HSVKISDEAFTCPYCP 47 (574)
Q Consensus 18 ~y~~k~y~~Lk~g~------~kVk~~~~~~~CP~C~ 47 (574)
+.....|+.++.|+ +.|......|+|+-|+
T Consensus 42 e~l~faf~~~~~gt~~e~A~L~i~~~p~~~~C~~CG 77 (139)
T 3a43_A 42 DIVKFAMEQLFAGTIAEGAEIEFVEEEAVFKCRNCN 77 (139)
T ss_dssp HHHHHHHHHHHTTSTTTTCEEEEEEECCEEEETTTC
T ss_pred HHHHHHHHHHHcCCcccCCEEEEEecCCcEECCCCC
Confidence 46778899999999 4777888999999996
No 411
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=24.11 E-value=3.1e+02 Score=22.82 Aligned_cols=60 Identities=15% Similarity=0.228 Sum_probs=40.9
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 008199 344 LEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQA 416 (574)
Q Consensus 344 L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~ 416 (574)
|...+.+--.-|+||....+.-......++..++.++.+.. ..+.+||-+|.+||.....
T Consensus 14 ~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V-------------~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 14 ITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAV-------------SALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHh
Confidence 33333344456778877777767778888888888755433 3456889999999876554
No 412
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=23.94 E-value=99 Score=25.94 Aligned_cols=85 Identities=7% Similarity=0.026 Sum_probs=49.7
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCC---CCceeEEEeeCCChhhhHhHHHHHHHhhhc
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFR---GHSGCAVVEFHKDWPGLHNAMSFEKAYEAD 198 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~---Gh~g~aIV~F~~dw~Gf~nA~~fe~~Fe~~ 198 (574)
+++|.|+.+.+. +.-.....|++.|+. |.+ ..|.....+. ...|++.|.|.+.-..-.-...|+..
T Consensus 10 ~l~l~Nm~~~~~----l~dd~~~dl~~~f~~--~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~---- 79 (105)
T 2pe8_A 10 VVLLRNMVGAGE----VDEDLEVETKEECEK--YGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGR---- 79 (105)
T ss_dssp EEEEESSSCSCC----C---CHHHHHHHGGG--GSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTC----
T ss_pred EEEEEcCCChHH----hhHHHHHHHHHHHHh--cCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCC----
Confidence 678889875111 111246889999999 765 4555554432 34799999998764332222222211
Q ss_pred CCChhhhhhhccCCCcceeeeeccCCCCC
Q 008199 199 HYGKKDWYASNQEKSGLYAWVARSDDYNL 227 (574)
Q Consensus 199 ~~GKkdW~~~~~~~~~LYGwvAradD~~~ 227 (574)
.-.++.|+--.|..++|..
T Consensus 80 ----------~~~Gr~i~v~~a~~~~f~~ 98 (105)
T 2pe8_A 80 ----------YFGGRVVKACFYNLDKFRV 98 (105)
T ss_dssp ----------EETTEECEEEECCHHHHHT
T ss_pred ----------EECCcEEEEEEcCHHHhhh
Confidence 1125677777777776654
No 413
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=23.78 E-value=73 Score=26.62 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=23.6
Q ss_pred HHHHH-HhcCCCC-cccccccCCCCC-ceeEEEeeCCChhh
Q 008199 147 LRDEL-IRRGFNP-TRVHPLWNFRGH-SGCAVVEFHKDWPG 184 (574)
Q Consensus 147 L~~~l-~~~GF~p-~kv~~l~~~~Gh-~g~aIV~F~~dw~G 184 (574)
|++.| +. |.+ ..|....+..|+ .|++.|.|.+.-..
T Consensus 43 l~~~f~~~--~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A 81 (104)
T 1jmt_A 43 VFTEMEEK--YGEVEEMNVCDNLGDHLVGNVYVKFRREEDA 81 (104)
T ss_dssp HHHHHHHH--TCCEEEEEECCSSSSSSEEEEEEEESCHHHH
T ss_pred HHHHhhcc--CCceEEEEEEeCCCCCccEEEEEEECCHHHH
Confidence 33444 88 765 455555555554 89999999875543
No 414
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=23.49 E-value=86 Score=28.87 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=35.4
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCCh
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDW 182 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~--~Gh~g~aIV~F~~dw 182 (574)
++.|-|+|. ..+...|++.|+. |.++ .|+...++ .-+.|++.|.|.+..
T Consensus 17 tlfVgnLp~---------~~te~~L~~~F~~--~G~I~~v~i~~d~~tg~~~G~afV~F~~~~ 68 (213)
T 4f02_A 17 SLYVGDLHP---------DVTEAMLYEKFSP--AGPILSIRVCRDMITRRSLGYAYVNFQQPA 68 (213)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--hCCEEEEEEecccCCCCccccccceeCCHH
Confidence 356789986 3467889999999 7664 45555443 347899999998643
No 415
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=23.46 E-value=24 Score=28.76 Aligned_cols=18 Identities=28% Similarity=0.663 Sum_probs=12.2
Q ss_pred CCeeeccCCCCCCccccC
Q 008199 38 DEAFTCPYCPKKRKQEYL 55 (574)
Q Consensus 38 ~~~~~CP~C~gkkk~~y~ 55 (574)
-..|.||.|...+.++-.
T Consensus 38 Pddw~CP~Cga~K~~F~~ 55 (70)
T 1dx8_A 38 SDSFMCPACRSPKNQFKS 55 (70)
T ss_dssp CTTCBCTTTCCBGGGEEE
T ss_pred CCCCcCCCCCCCHHHceE
Confidence 345999999865544433
No 416
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=23.31 E-value=36 Score=27.80 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=22.6
Q ss_pred ceEeecCCeeeccCCCCCCccccChHHHHhhhhc
Q 008199 32 HSVKISDEAFTCPYCPKKRKQEYLYKDLLQHASG 65 (574)
Q Consensus 32 ~kVk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~g 65 (574)
+.+..+..+|.||.|+. .+.....|..|-..
T Consensus 20 ~~~~~~~~~h~C~~Cgk---~F~~~~~L~~H~~~ 50 (85)
T 2lv2_A 20 LGLSASAECHLCPVCGE---SFASKGAQERHLRL 50 (85)
T ss_dssp CSSCCCCTTEECTTSCC---EESSHHHHHHHHHT
T ss_pred CCCCCCCCCEECCCCCC---CcCcHHHHhhhhhh
Confidence 45566778899999973 36667778888643
No 417
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=23.18 E-value=46 Score=20.28 Aligned_cols=22 Identities=32% Similarity=0.674 Sum_probs=15.6
Q ss_pred eeecc--CCCCCCccccChHHHHhhhh
Q 008199 40 AFTCP--YCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 40 ~~~CP--~C~gkkk~~y~~~~LLqHA~ 64 (574)
+|.|+ .|+.. +.....|..|-.
T Consensus 2 p~~C~~~~C~k~---f~~~~~L~~H~~ 25 (31)
T 1sp2_A 2 PFMCTWSYCGKR---FTRSDELQRHKR 25 (31)
T ss_dssp CCBCCSTTCCCB---CSSHHHHHHHHT
T ss_pred CcCCcCCCCCcc---cCCHhHHHHHHH
Confidence 68998 89733 556677888854
No 418
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=23.17 E-value=2.8e+02 Score=23.94 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=40.2
Q ss_pred HhhhcHHHHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 008199 347 RETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQA 416 (574)
Q Consensus 347 ~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~ 416 (574)
.+.+--.-|+||....+.-......++..++.++.+. -..+.+||-+|.++|.....
T Consensus 17 ~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~-------------V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 17 HEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAA-------------VSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHh
Confidence 3333344677887777776677888888888775443 33566899999999987766
No 419
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=22.99 E-value=41 Score=25.80 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=12.0
Q ss_pred CCeeeccCCCCCCccccChHHHHhh
Q 008199 38 DEAFTCPYCPKKRKQEYLYKDLLQH 62 (574)
Q Consensus 38 ~~~~~CP~C~gkkk~~y~~~~LLqH 62 (574)
..+|.||.|+.. +.....|..|
T Consensus 63 ~~~~~C~~C~~~---f~~~~~l~~H 84 (89)
T 2wbs_A 63 HRPFQCQKCDRA---FSRSDHLALH 84 (89)
T ss_dssp CCCEECSSSSCE---ESSHHHHHHH
T ss_pred CCCccCCCCCcc---cCCHHHHHHH
Confidence 445666666522 4445555555
No 420
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=22.95 E-value=44 Score=26.94 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=18.8
Q ss_pred ceEeecCCeeeccCCCCCCccccChHHHHhhh
Q 008199 32 HSVKISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 32 ~kVk~~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
+.+-....+|.|+.|... +.....|..|-
T Consensus 8 ~~~h~~~~~~~C~~C~~~---f~~~~~l~~H~ 36 (107)
T 1wjp_A 8 ASPVENKEVYQCRLCNAK---LSSLLEQGSHE 36 (107)
T ss_dssp CCCCCCCCCCBCTTTCCB---CSSHHHHHHHH
T ss_pred CcccCCCcCeECCCCCCc---cCCHHHHHHHH
Confidence 345556788999999743 44455666663
No 421
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=22.90 E-value=1.6e+02 Score=23.15 Aligned_cols=41 Identities=32% Similarity=0.412 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhh
Q 008199 382 ADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLN 429 (574)
Q Consensus 382 ade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~ 429 (574)
+...|+|| |.-+..+..||.+||.|-..+ |-||++|..-|.
T Consensus 9 se~q~~kL----Kq~n~~L~~kv~~Le~~c~e~---eQEieRL~~LLk 49 (58)
T 3a2a_A 9 SERQLLRL----KQMNVQLAAKIQHLEFSCSEK---EQEIERLNKLLR 49 (58)
T ss_dssp --CHHHHH----HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 33445555 566788899999998876654 778999887664
No 422
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=22.87 E-value=3e+02 Score=22.26 Aligned_cols=13 Identities=8% Similarity=0.286 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHh
Q 008199 400 LHNRIIQLEKQLD 412 (574)
Q Consensus 400 ~~~ki~~LekqL~ 412 (574)
+-.||..|+.+++
T Consensus 4 ikkKm~~lk~e~d 16 (81)
T 1ic2_A 4 IKKKMQMLKLDKE 16 (81)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445555544443
No 423
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=22.71 E-value=2e+02 Score=24.20 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcc
Q 008199 384 ENVRKLAEDQKK--------QKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHM 434 (574)
Q Consensus 384 e~vlkLve~hkr--------Eke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~VmKhm 434 (574)
++.-+.+.++.| |.+.+|..|.+|+.++ ..|.-+.++|+..-++.+||
T Consensus 27 e~YWk~lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi---~~lk~en~eL~elae~~q~m 82 (83)
T 1uii_A 27 SQYWKEVAEKRRKALYEALKENEKLHKEIEQKDNEI---ARLKKENKELAEVAEHVQYM 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
No 424
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=22.62 E-value=5.4e+02 Score=27.81 Aligned_cols=99 Identities=13% Similarity=0.139 Sum_probs=0.0
Q ss_pred hhhhcc-----cCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHH-HHHHHHHHHH
Q 008199 233 DHLRKI-----GDLKTISEMMEEEARKQNL---LVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEE-KDRLLQSYNE 303 (574)
Q Consensus 233 ~~LrK~-----gdLKTi~ei~~E~~rk~~~---lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meE-k~~l~~~yne 303 (574)
++|.++ .+|..+.+++.+-++.+.. +|..|...+..+...+..++...++.+..|.+.... ++.+...+-.
T Consensus 89 D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~ 168 (464)
T 1m1j_B 89 TTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPS 168 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchh
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008199 304 EIKKIQLSARDHFQRIFTDHEKLKLQLE 331 (574)
Q Consensus 304 Ei~kmQ~~a~~~~~rI~~e~ekl~~eLe 331 (574)
.|+.++........+|..=..++....+
T Consensus 169 ~i~~L~~~~~~l~~ki~~l~~~~~~~~~ 196 (464)
T 1m1j_B 169 SLRVLRAVIDSLHKKIQKLENAIATQTD 196 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 425
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=22.36 E-value=3.4e+02 Score=23.01 Aligned_cols=48 Identities=23% Similarity=0.189 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 008199 443 LQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELIN 490 (574)
Q Consensus 443 ~~k~~~l~~~L~ek~~el~~~e~lnq~Li~ker~sNdELqeARk~LI~ 490 (574)
..+.+.+..++.+.+......+.-...|-.|-+..-+||..+...|-.
T Consensus 22 ~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~e 69 (101)
T 3u1c_A 22 LDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHK 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555544443
No 426
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=22.19 E-value=26 Score=33.04 Aligned_cols=24 Identities=21% Similarity=0.373 Sum_probs=16.1
Q ss_pred eEe-ecCCeeeccCCCCCCccccCh
Q 008199 33 SVK-ISDEAFTCPYCPKKRKQEYLY 56 (574)
Q Consensus 33 kVk-~~~~~~~CP~C~gkkk~~y~~ 56 (574)
||- .++|+|+||.|...+.-.|.|
T Consensus 51 KV~~~~~g~~~CekC~~~~~~~~RY 75 (172)
T 3u50_C 51 SVLKYHGDSFFCESCQQFINPQVHL 75 (172)
T ss_dssp CEEEETTTEEEETTTTEECCCEEEE
T ss_pred EeeeCCCCeEECCCCCCCCCceEEE
Confidence 454 689999999998542333443
No 427
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=22.17 E-value=5e+02 Score=24.49 Aligned_cols=65 Identities=17% Similarity=0.303 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhhhchhHH
Q 008199 307 KIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQL 374 (574)
Q Consensus 307 kmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~l 374 (574)
.|-..+-+.+.++|-.. +..||....+|..+..++++.-.+--.--..|.+++-+.+.-+.-++|
T Consensus 12 ~~k~~r~e~aek~~~~k---~~~le~ek~~l~~~e~~r~k~~~h~~~k~~qlre~~d~gtt~~~i~~m 76 (169)
T 3k29_A 12 SIKKDRVDRAEKVVKEK---RRLLELEQEKLRERESERDKVKNHYMQKIRQLREQLDDGTTSDAILKM 76 (169)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 34555566666676655 345555566666666655555444332233334444444433444444
No 428
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=21.73 E-value=4.1e+02 Score=23.35 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q 008199 397 KEDLHNRIIQLEKQLDAKQALALEI 421 (574)
Q Consensus 397 ke~~~~ki~~LekqL~~kQ~LELEi 421 (574)
-..+..+..-||-+|+.|..|.-.+
T Consensus 86 ~n~aiErnalLE~El~EKe~L~~~~ 110 (111)
T 2v66_B 86 LNQAIERNAFLESELDEKESLLVSV 110 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456667777889999888876543
No 429
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=21.60 E-value=48 Score=21.26 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=16.0
Q ss_pred cCCeeeccC--CCCCCccccChHHHHhhh
Q 008199 37 SDEAFTCPY--CPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 37 ~~~~~~CP~--C~gkkk~~y~~~~LLqHA 63 (574)
++.+|.|++ |... +.....|..|-
T Consensus 3 ~~k~~~C~~~~C~k~---f~~~~~L~~H~ 28 (38)
T 1bhi_A 3 DDKPFLCTAPGCGQR---FTNEDHLAVHK 28 (38)
T ss_dssp TCCCEECCCTTTCCE---ESSHHHHHHHH
T ss_pred CCcceECCCCCCCcc---cCCHHHHHHHH
Confidence 457899995 9733 44555677774
No 430
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=21.57 E-value=45 Score=25.33 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=18.8
Q ss_pred EeecCCeeeccCCCCCCccccChHHHHhhh
Q 008199 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 34 Vk~~~~~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
+-..+.+|.|+.|... +.....|..|-
T Consensus 9 ~H~~~k~~~C~~C~~~---f~~~~~l~~H~ 35 (86)
T 1x6h_A 9 THTGEKPYACSHCDKT---FRQKQLLDMHF 35 (86)
T ss_dssp TCCCCCCEECSSSSCE---ESSHHHHHHHH
T ss_pred eecCCCCCcCCCCCCc---cCCHHHHHHHH
Confidence 3456788999999743 45566677774
No 431
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=21.37 E-value=1.8e+02 Score=24.32 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHhhhhhhhhhc
Q 008199 389 LAEDQKKQKEDLHNRIIQLEKQLDAKQ----ALALEIERLKGSLNVMKH 433 (574)
Q Consensus 389 Lve~hkrEke~~~~ki~~LekqL~~kQ----~LELEi~qLkg~L~VmKh 433 (574)
|||++..--.+++....+|-+++.+++ .|.-|+.+|+.-++=.+|
T Consensus 21 lAE~RR~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~ 69 (79)
T 2zxx_A 21 VAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQY 69 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444434444444444444444444 355555555554444444
No 432
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.22 E-value=98 Score=24.73 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=24.8
Q ss_pred CchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCC
Q 008199 143 SGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKD 181 (574)
Q Consensus 143 s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~d 181 (574)
+...|++.|+. |.++.-..+ .-..|+|.|.|...
T Consensus 26 t~~~l~~~F~~--~G~i~~v~i---~~~~g~afV~f~~~ 59 (97)
T 1x5p_A 26 TPTLLRGAFSP--FGNIIDLSM---DPPRNCAFVTYEKM 59 (97)
T ss_dssp CHHHHHHHHTT--TSCEEEEEE---ETTTTEEEEEESSH
T ss_pred CHHHHHHHHhh--CCCEEEEEe---cCCCCEEEEEECCH
Confidence 67889999999 766544333 24568999999863
No 433
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=21.17 E-value=28 Score=29.63 Aligned_cols=16 Identities=19% Similarity=0.675 Sum_probs=11.2
Q ss_pred CeeeccCCCCCCcccc
Q 008199 39 EAFTCPYCPKKRKQEY 54 (574)
Q Consensus 39 ~~~~CP~C~gkkk~~y 54 (574)
..|.||.|...+.++.
T Consensus 67 ddW~CPvCga~K~~F~ 82 (87)
T 1s24_A 67 DDWCCPDCGATKEDYV 82 (87)
T ss_dssp TTCCCSSSCCCGGGEE
T ss_pred CCCCCCCCCCCHHHhh
Confidence 4599999986554443
No 434
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=21.16 E-value=73 Score=26.87 Aligned_cols=8 Identities=75% Similarity=0.841 Sum_probs=4.4
Q ss_pred hHHHHHHH
Q 008199 479 DELQDARK 486 (574)
Q Consensus 479 dELqeARk 486 (574)
+|||+|+.
T Consensus 43 ~eLq~A~~ 50 (90)
T 4b6x_A 43 DELQDAID 50 (90)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
No 435
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=21.15 E-value=47 Score=25.82 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=17.8
Q ss_pred cCCeeeccCCCCCCccccChHHHHhhhh
Q 008199 37 SDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 37 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+..+|.|+.|+.. +.....|..|-.
T Consensus 28 ~~~~~~C~~C~k~---f~~~~~L~~H~~ 52 (88)
T 1llm_C 28 GEKPFACDICGRK---FARSDERKRHRD 52 (88)
T ss_dssp CCCCEECTTTCCE---ESSHHHHHHHHH
T ss_pred CCCCccCCCCCCc---cCCHHHHHHHHH
Confidence 4568999999733 556677878854
No 436
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=20.99 E-value=48 Score=22.92 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=17.4
Q ss_pred eEeecCCeeecc--CCCCCCccccChHHHHhhh
Q 008199 33 SVKISDEAFTCP--YCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 33 kVk~~~~~~~CP--~C~gkkk~~y~~~~LLqHA 63 (574)
.+-.++.+|.|+ .|+.. +..-..|..|-
T Consensus 11 ~~H~~~k~~~C~~~~C~k~---F~~~~~L~~H~ 40 (47)
T 1ncs_A 11 VKEMPDKTFECLFPGCTKT---FKRRYNIRSHI 40 (47)
T ss_dssp CEEETTTEEECCCTTCCCE---ECSSSSHHHHH
T ss_pred hccCCCCCeECCCCCCCCc---cCCHHHHHHHH
Confidence 345678899996 59743 33444555663
No 437
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=20.91 E-value=48 Score=25.97 Aligned_cols=8 Identities=38% Similarity=1.111 Sum_probs=3.5
Q ss_pred eeeccCCC
Q 008199 40 AFTCPYCP 47 (574)
Q Consensus 40 ~~~CP~C~ 47 (574)
+|.|+.|.
T Consensus 75 ~~~C~~C~ 82 (100)
T 2ebt_A 75 PFQCGVCN 82 (100)
T ss_dssp SCBCSSSC
T ss_pred CeECCCCc
Confidence 34444443
No 438
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=20.87 E-value=2e+02 Score=27.70 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008199 300 SYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQN 351 (574)
Q Consensus 300 ~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~ 351 (574)
.|..=+..-...|..-++++..+|..|..+|+++-.|++.=.++|+.+.++.
T Consensus 6 ~YK~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 6 VYKNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3555555556677788899999999999999999888888777776655543
No 439
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.62 E-value=48 Score=26.74 Aligned_cols=9 Identities=22% Similarity=0.866 Sum_probs=4.4
Q ss_pred CeeeccCCC
Q 008199 39 EAFTCPYCP 47 (574)
Q Consensus 39 ~~~~CP~C~ 47 (574)
.+|.||.|.
T Consensus 36 ~~~~C~~C~ 44 (110)
T 2csh_A 36 RPYGCGVCG 44 (110)
T ss_dssp CSEECTTTS
T ss_pred cCccCCCCC
Confidence 345555554
No 440
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=20.33 E-value=7.4e+02 Score=25.73 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 008199 394 KKQKEDLHNRIIQLEKQLDA 413 (574)
Q Consensus 394 krEke~~~~ki~~LekqL~~ 413 (574)
.|++..+--.+++|.|+-|+
T Consensus 239 ~~~~~~lkp~l~ql~k~rd~ 258 (373)
T 3hhm_B 239 DKRMNSIKPDLIQLRKTRDQ 258 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhhccChHHHHHHHHHHH
Confidence 35566666667777776665
No 441
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=20.28 E-value=73 Score=27.63 Aligned_cols=30 Identities=7% Similarity=0.254 Sum_probs=24.7
Q ss_pred HhHHHHHHhhhCCC-c------eEeecCCeeeccCCC
Q 008199 18 KYEDKSYKKLKSGN-H------SVKISDEAFTCPYCP 47 (574)
Q Consensus 18 ~y~~k~y~~Lk~g~-~------kVk~~~~~~~CP~C~ 47 (574)
++....|+.++.|+ + .|......|+|+-|+
T Consensus 44 e~l~f~f~~~~~gt~~~e~a~L~i~~~p~~~~C~~CG 80 (119)
T 2kdx_A 44 SLFVSAFETFREESLVCKDAILDIVDEKVELECKDCS 80 (119)
T ss_dssp HHHHHHHHHHGGGCTTTSSCCEEEEEECCEEECSSSS
T ss_pred HHHHHHHHHHHhCChhhcCcEEEEEeccceEEcCCCC
Confidence 57788899999998 4 667778889999996
No 442
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=20.03 E-value=2.9e+02 Score=26.59 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 008199 241 LKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEE 275 (574)
Q Consensus 241 LKTi~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~e 275 (574)
|-.|...+++..+..+.+|+.|.+++...++.|+.
T Consensus 4 ~~~YK~~~q~ql~~ad~LV~~L~~En~~L~~ql~~ 38 (190)
T 4emc_A 4 LTVYKNSVKQQIDSADLLVANLVNENFVLSEKLDT 38 (190)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788999999999999999977777666553
Done!