Query 008202
Match_columns 574
No_of_seqs 350 out of 2407
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 20:47:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008202.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008202hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00178 sulfite reductase 100.0 1E-128 3E-133 1081.4 54.1 529 42-572 26-554 (623)
2 TIGR02042 sir ferredoxin-sulfi 100.0 1E-119 2E-124 1005.0 51.0 504 68-572 3-515 (577)
3 KOG0560 Sulfite reductase (fer 100.0 6E-121 1E-125 943.0 35.7 537 20-572 26-571 (638)
4 PRK13504 sulfite reductase sub 100.0 2E-110 4E-115 933.6 49.3 485 68-572 8-505 (569)
5 TIGR02041 CysI sulfite reducta 100.0 1E-102 2E-107 866.2 47.7 475 75-572 1-488 (541)
6 PRK09567 nirA ferredoxin-nitri 100.0 2.1E-98 4E-103 837.9 47.3 441 67-572 61-525 (593)
7 COG0155 CysI Sulfite reductase 100.0 4.8E-96 1E-100 795.8 37.2 439 70-572 6-450 (510)
8 PLN02431 ferredoxin--nitrite r 100.0 1.6E-93 3.5E-98 794.0 48.5 446 68-572 72-546 (587)
9 PRK09566 nirA ferredoxin-nitri 100.0 3.3E-91 7.1E-96 770.8 45.2 444 68-572 9-471 (513)
10 TIGR02435 CobG precorrin-3B sy 100.0 1.2E-77 2.7E-82 642.7 38.9 365 127-566 17-389 (390)
11 TIGR02066 dsrB sulfite reducta 100.0 3.4E-43 7.4E-48 368.4 17.7 233 104-393 6-313 (341)
12 TIGR02374 nitri_red_nirB nitri 100.0 1.7E-39 3.6E-44 375.9 23.3 205 124-393 550-756 (785)
13 COG2221 DsrA Dissimilatory sul 100.0 4.7E-39 1E-43 325.1 22.5 225 109-397 19-297 (317)
14 TIGR02912 sulfite_red_C sulfit 100.0 7.5E-39 1.6E-43 334.0 19.9 230 103-394 3-299 (314)
15 TIGR02064 dsrA sulfite reducta 100.0 2.8E-38 6E-43 336.5 21.0 271 69-391 8-366 (402)
16 PRK14989 nitrite reductase sub 100.0 3.9E-38 8.4E-43 365.2 22.8 205 124-393 561-770 (847)
17 PRK09567 nirA ferredoxin-nitri 100.0 1.6E-37 3.6E-42 347.8 24.0 225 105-393 359-588 (593)
18 PLN02431 ferredoxin--nitrite r 100.0 2.7E-34 5.9E-39 320.1 21.4 198 105-363 380-582 (587)
19 PLN00178 sulfite reductase 100.0 3.9E-34 8.5E-39 320.8 22.4 224 107-397 393-619 (623)
20 TIGR02042 sir ferredoxin-sulfi 100.0 2.3E-34 4.9E-39 321.1 19.7 219 107-394 351-577 (577)
21 PRK09566 nirA ferredoxin-nitri 100.0 6.6E-33 1.4E-37 306.8 20.1 196 108-364 309-508 (513)
22 PRK13504 sulfite reductase sub 100.0 6.2E-33 1.3E-37 310.4 19.5 214 108-392 342-563 (569)
23 PF01077 NIR_SIR: Nitrite and 100.0 2.6E-31 5.6E-36 250.4 11.0 153 195-399 1-157 (157)
24 TIGR02041 CysI sulfite reducta 100.0 7.7E-30 1.7E-34 283.8 19.5 210 108-385 326-541 (541)
25 PRK14989 nitrite reductase sub 99.9 3.8E-27 8.2E-32 273.8 19.3 192 373-572 494-706 (847)
26 TIGR02374 nitri_red_nirB nitri 99.9 1.8E-26 3.8E-31 267.6 20.3 191 372-572 482-694 (785)
27 COG2221 DsrA Dissimilatory sul 99.9 2E-26 4.3E-31 233.6 14.3 147 412-565 18-166 (317)
28 TIGR02066 dsrB sulfite reducta 99.9 1.1E-26 2.4E-31 243.9 12.6 141 420-563 27-168 (341)
29 COG1251 NirB NAD(P)H-nitrite r 99.9 3.1E-25 6.7E-30 244.3 14.8 203 124-392 549-753 (793)
30 TIGR02435 CobG precorrin-3B sy 99.9 9.7E-25 2.1E-29 234.3 17.0 149 420-572 15-167 (390)
31 COG0155 CysI Sulfite reductase 99.9 1.7E-23 3.6E-28 228.7 17.4 207 106-383 293-501 (510)
32 TIGR02064 dsrA sulfite reducta 99.9 5E-24 1.1E-28 227.4 12.7 140 421-563 79-222 (402)
33 TIGR02912 sulfite_red_C sulfit 99.9 4.1E-23 8.8E-28 215.8 12.4 147 414-568 10-166 (314)
34 KOG0560 Sulfite reductase (fer 99.7 5.4E-18 1.2E-22 177.8 11.6 219 104-390 408-629 (638)
35 COG1251 NirB NAD(P)H-nitrite r 99.7 8.7E-18 1.9E-22 185.9 13.3 189 371-572 482-692 (793)
36 PF03460 NIR_SIR_ferr: Nitrite 99.7 6.6E-17 1.4E-21 131.5 6.4 66 113-184 1-66 (69)
37 PF01077 NIR_SIR: Nitrite and 99.6 8.5E-16 1.8E-20 144.8 6.8 79 492-572 3-85 (157)
38 PF03460 NIR_SIR_ferr: Nitrite 99.4 1.4E-13 3E-18 111.9 6.6 66 417-482 1-69 (69)
39 PRK00366 ispG 4-hydroxy-3-meth 98.9 2.6E-08 5.7E-13 103.6 16.7 129 410-572 202-332 (360)
40 PRK00366 ispG 4-hydroxy-3-meth 98.8 4.9E-08 1.1E-12 101.6 11.6 111 173-361 245-356 (360)
41 TIGR00612 ispG_gcpE 1-hydroxy- 97.3 0.0082 1.8E-07 62.8 16.1 129 410-571 193-323 (346)
42 PF04551 GcpE: GcpE protein; 96.5 0.011 2.3E-07 62.4 8.7 121 158-361 236-358 (359)
43 PF04551 GcpE: GcpE protein; 96.4 0.0057 1.2E-07 64.4 6.4 98 451-571 234-332 (359)
44 PLN02925 4-hydroxy-3-methylbut 96.0 0.015 3.2E-07 66.0 7.5 81 474-572 617-698 (733)
45 COG0821 gcpE 1-hydroxy-2-methy 96.0 0.032 6.8E-07 58.2 9.0 128 411-571 196-325 (361)
46 TIGR00612 ispG_gcpE 1-hydroxy- 95.8 0.057 1.2E-06 56.6 10.1 118 157-357 226-344 (346)
47 COG0821 gcpE 1-hydroxy-2-methy 95.4 0.15 3.3E-06 53.3 11.4 116 174-366 239-355 (361)
48 PLN02925 4-hydroxy-3-methylbut 94.8 0.74 1.6E-05 52.8 15.5 117 170-366 607-725 (733)
49 PRK00694 4-hydroxy-3-methylbut 94.8 0.063 1.4E-06 59.9 6.8 79 476-572 495-574 (606)
50 cd01916 ACS_1 Acetyl-CoA synth 94.1 0.047 1E-06 63.2 4.3 46 145-191 278-323 (731)
51 PRK02048 4-hydroxy-3-methylbut 93.1 0.13 2.8E-06 57.8 5.3 79 476-572 503-582 (611)
52 PRK00694 4-hydroxy-3-methylbut 91.9 1.3 2.8E-05 49.9 11.0 92 200-366 508-601 (606)
53 PRK02048 4-hydroxy-3-methylbut 90.0 1.1 2.5E-05 50.5 8.5 91 201-366 517-609 (611)
54 PRK00941 acetyl-CoA decarbonyl 87.0 0.69 1.5E-05 54.0 4.5 43 146-189 316-358 (781)
55 cd01916 ACS_1 Acetyl-CoA synth 78.7 2.2 4.7E-05 49.9 4.2 46 440-485 277-323 (731)
56 PRK00941 acetyl-CoA decarbonyl 57.2 13 0.00028 43.7 4.6 44 441-484 315-359 (781)
57 COG4273 Uncharacterized conser 52.6 16 0.00036 33.2 3.5 64 284-367 70-133 (135)
58 PRK07539 NADH dehydrogenase su 47.2 88 0.0019 29.4 7.7 95 432-556 35-131 (154)
59 COG1885 Uncharacterized protei 46.9 24 0.00052 31.0 3.4 38 523-562 30-72 (115)
60 PRK05988 formate dehydrogenase 38.2 1.5E+02 0.0032 28.0 7.8 93 432-554 36-130 (156)
61 TIGR01958 nuoE_fam NADH-quinon 36.7 1.7E+02 0.0036 27.2 7.8 96 432-557 29-126 (148)
62 COG1168 MalY Bifunctional PLP- 35.8 57 0.0012 35.3 5.0 40 427-466 166-207 (388)
63 PF14085 DUF4265: Domain of un 31.5 2.7E+02 0.0059 24.8 8.0 58 421-481 50-108 (117)
64 PF01257 2Fe-2S_thioredx: Thio 30.4 64 0.0014 30.0 3.9 53 495-554 66-120 (145)
65 PF06183 DinI: DinI-like famil 29.6 89 0.0019 25.2 4.0 51 431-481 2-55 (65)
66 cd02980 TRX_Fd_family Thioredo 27.5 1.4E+02 0.0031 23.7 5.1 53 497-558 3-55 (77)
67 cd03081 TRX_Fd_NuoE_FDH_gamma 24.3 1.1E+02 0.0024 25.2 3.9 53 496-555 3-57 (80)
68 PF06183 DinI: DinI-like famil 22.0 1.3E+02 0.0029 24.2 3.7 54 134-188 1-56 (65)
69 cd06569 GH20_Sm-chitobiase-lik 21.4 5.5E+02 0.012 28.5 9.7 37 511-550 176-214 (445)
70 PF13089 PP_kinase_N: Polyphos 20.9 13 0.00029 32.9 -2.4 44 104-154 28-84 (109)
71 PRK00441 argR arginine repress 20.9 5.5E+02 0.012 24.0 8.2 68 413-485 46-115 (149)
72 PF14527 LAGLIDADG_WhiA: WhiA 20.0 2.5E+02 0.0055 24.0 5.4 58 422-485 20-77 (93)
No 1
>PLN00178 sulfite reductase
Probab=100.00 E-value=1.2e-128 Score=1081.40 Aligned_cols=529 Identities=81% Similarity=1.296 Sum_probs=503.3
Q ss_pred cCCCCCccceeecccCCCCCCcccccCCCCChhhhhhhccCCCccchHHHhhhcCCCCChhHHHHhhhceeEeeccCccc
Q 008202 42 PVPYASRSSVVRAVSTPVKPETETKTETKRSKVEIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDER 121 (574)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~E~~K~~~~~l~~~~~~~~~~~~~~~~~~~~~~~k~~G~y~Q~~r~~r 121 (574)
+.+.+++.+++++|++|++++++. .+|+||+|+||++|++|+++++++|++..++++++|.+++||||+|+|+|||.|
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~--~~k~~~~E~~K~~s~~l~~~~~~~l~~~~~~~~~~d~~~~K~~G~y~q~~r~~r 103 (623)
T PLN00178 26 PSRSRSGRLVIRAVATPVKKPTTE--PPKRSKVEIIKENSNFLRHPLNEELATEAPNINEDAVQLIKFHGSYQQDNREKR 103 (623)
T ss_pred CccccCCCcceeeeecCCCCcccc--cCCCCHHHHHhhhcCCCcchHHHHHHhccCCCChhHHhHhheeeeeeecCcccc
Confidence 444445568889999999998764 779999999999999999999999998888999999999999999999999999
Q ss_pred CCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcCCCCCCCCCCCcc
Q 008202 122 GAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRN 201 (574)
Q Consensus 122 ~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g~t~~a~gd~~RN 201 (574)
.+++|+||+|+|+|+|+||++||++|++||++||+|+||||||||||||||.++|+++++++|.+.+++|.++|||++||
T Consensus 104 ~~~~~~fMlRvriPgG~lt~~Q~~~la~iA~~yg~g~l~lTTRq~iQlhgI~~~dl~~i~~~L~~~gl~t~~a~gD~~RN 183 (623)
T PLN00178 104 GGKAYQFMLRTKQPAGKVPNRLYLVMDDLADEFGIGTLRLTTRQTFQLHGVLKKDLKTVMSSIIKNMGSTLGACGDVNRN 183 (623)
T ss_pred CCcCcceEEEEecCCcccCHHHHHHHHHHHHHhCCCeEEEecccceEEcCCCHHHHHHHHHHHHHcCCCcccccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999955566999999999999
Q ss_pred eecCCCCCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCC
Q 008202 202 VLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPR 281 (574)
Q Consensus 202 V~acp~~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPr 281 (574)
||+||+|++..++.|++++|.+|+++|.|++++|+|+|||++++...++++++.+++++.++++|.+++||+|+..+|||
T Consensus 184 V~~~p~p~~~~e~~d~~~~a~~l~~~l~p~t~~y~e~~ld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ep~yg~~~LPR 263 (623)
T PLN00178 184 VLAPAAPFARKDYLFAQELAKNIAALLAPQSGAYYDIWVDGEKIMSAEPPEVTKARNDNSHGTNFEDSPEPIYGTQFLPR 263 (623)
T ss_pred eecCCCcCCchhhhhHHHHHHHHHHhhcccccchhhhhcccccccccccchhhhhhhcccccccccCCccccccccCCCC
Confidence 99999999989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccCCCChhHHHHHHHHHHHHH
Q 008202 282 KFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQ 361 (574)
Q Consensus 282 KfkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~~v~~eev~~~~~ai~~~~ 361 (574)
||||+|+||++||+++++|||||+++.+++|+..||+|+||||+|++|++..|+|++|+.++||++||+++++++|+.+|
T Consensus 264 KFKiavsg~~~n~~~~~~nDiG~~a~~~~~g~~~Gf~v~vGGg~g~~~~~~~t~pr~a~~l~~v~~e~v~~v~~av~~~~ 343 (623)
T PLN00178 264 KFKIAVTVPGDNSVDILTNDIGVVVVSDEAGEPQGYNIYVGGGMGRTHRNETTFPRLADPLGYVPKEDILYAVKAIVATQ 343 (623)
T ss_pred CeEEEEecCccccccccccceEEEEEEeCCCcEeeEEEEEECccccCCCccCCCCccccccCcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999875566679999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCcchhhhHHHHHHHhhhhHHHHHHHHHhCCCCCCCCCCCcccccccCCeeeecCCcEEEEEEeCCCCcCHHHHH
Q 008202 362 RENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKK 441 (574)
Q Consensus 362 rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve~~~g~~~~~~~~~~~~~~~~~~G~~~q~dG~~~v~v~vp~Grl~~~~l~ 441 (574)
+|+|+|+||+++||||+|++||+++|+++||+|+|+++++..+.+++...+|+|||+|+||.|++++++|+|+|+++||+
T Consensus 344 rd~G~R~~R~~aRlk~li~~~G~e~f~~~ve~~~g~~~~~~~~~~~~~~~d~~G~~~q~dG~~~v~l~vp~Grit~~~l~ 423 (623)
T PLN00178 344 RDYGRRDDRKQSRMKYLVHSWGIEKFRSVVEQYYGKKFEPFRELPEWEFKSYLGWHEQGDGKLFYGVHVDNGRIKGEAKK 423 (623)
T ss_pred HHhCcccchhhhHHHHHHHHHCHHHHHHHHHHHhcccccCCCCccccccccceeEEEccCCcEEEEEecCCeecCHHHHH
Confidence 99999999999999999999999999999999999999888888888889999999999999999999999999999999
Q ss_pred HHHHHHHHhCCeEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHH
Q 008202 442 TLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDIL 521 (574)
Q Consensus 442 ~La~la~~yg~~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~ 521 (574)
.|++||++||.+||||+||||+|++|+++++++|.+.|+++|+......++++++++||+|+++|++|++||+++++.|+
T Consensus 424 ~La~iAe~yg~~iRlT~~Qnlil~~I~~~~~~~i~~~L~~~Gl~~~~~~~~~~r~~vAC~G~~~C~lA~~et~~~a~~l~ 503 (623)
T PLN00178 424 ALREVIEKYNLPVRLTPNQNLILCDIRPAWKEPITAALAAAGLLEPEEVDPLNRTAMACPALPLCPLAITEAERGIPDIL 503 (623)
T ss_pred HHHHHHHHhCCcEEEeCCCCEEEcCCCHHHHHHHHHHHHhCCCCCCCCCCcceeeeeecCCCCCCcccHHHHHHHHHHHH
Confidence 99999999998999999999999999999999999999999998755568899999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeecCCceEEEE
Q 008202 522 KRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVFQ 572 (574)
Q Consensus 522 ~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~~g~Y~l~l 572 (574)
+++++.+.+.+++.+.+++||||||||+|++|+++||||+|++++.|+||+
T Consensus 504 ~~l~~~~~~~~l~~~~~i~I~vSGCpNgCarp~iaDIGlvG~~~~~Y~I~l 554 (623)
T PLN00178 504 KRVRAMFNKVGLKYDESVVVRMTGCPNGCARPYMAELGFVGDGPNSYQIWL 554 (623)
T ss_pred HHHHHHHhhcCCCCCCceEEEEeCCCccccccccCcEEEEcCCCCeEEEEE
Confidence 999998888888766899999999999999999999999999888999997
No 2
>TIGR02042 sir ferredoxin-sulfite reductase. monomeric enzyme that also catalyzes the reduction of sulfite to sulfide.
Probab=100.00 E-value=9.7e-120 Score=1005.03 Aligned_cols=504 Identities=71% Similarity=1.181 Sum_probs=471.7
Q ss_pred CCCCChhhhhhhccCCCccchHHHhhhcCCCCChhHHHHhhhceeEeeccCcccC---CccceEEEEEEcCCccccHHHH
Q 008202 68 ETKRSKVEIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDERG---AKSYSFMLRTKNPCGKVSNQLY 144 (574)
Q Consensus 68 ~~k~~~~E~~K~~~~~l~~~~~~~~~~~~~~~~~~~~~~~k~~G~y~Q~~r~~r~---~~~~~fmvRiripgG~lt~~ql 144 (574)
.+|+||+|+||.+|++||++|.++|.+..++++++|.+++||||+|+|+|||.|. +++|+||+|+|+|+|+||++||
T Consensus 3 ~~~~~~~e~~k~~s~~l~~~~~~~l~~~~~~~~~~d~~~lK~~G~y~q~~r~~r~~~~~~~~~fM~RiriPgG~lt~~q~ 82 (577)
T TIGR02042 3 PQKRSKVEILKERSNFLREPLNEQLLEEATHFNEDAVQILKFHGSYQQDNRDNRGKGQEKDYQFMLRTKNPGGYVPPQLY 82 (577)
T ss_pred CCCCChHHHHhhhcccccCcHHHHhhccccCCChhHHHHHhheeeeeecCccccccccCccceEEEEEecCCcccCHHHH
Confidence 3479999999999999999999999988889999999999999999999998774 6788999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcCCCCCCCCCCCcceecCCCCCCch-hhhhHHHHHHH
Q 008202 145 LTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRK-DYLFAQKTAEN 223 (574)
Q Consensus 145 ~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g~t~~a~gd~~RNV~acp~~~~~~-~~~d~~~la~~ 223 (574)
+.|++||++||+|++|||||||||||||+++++++++++|.+.+++|.++|||++||||+||+++|.. ++.++.+++++
T Consensus 83 ~~ia~ia~~yg~g~~~iTtRq~iql~gi~~~~~~~~~~~l~~~~l~t~~a~gd~~RNV~~~P~~~~~~~~~~~~~~~a~~ 162 (577)
T TIGR02042 83 LTLDDLADEYGNGTLRATTRQTFQLHGILKKNLKTVISTIVKNLGSTLGACGDLNRNVMAPPAPFRKRPEYEFAREYADN 162 (577)
T ss_pred HHHHHHHHHhCCCcEEEEcccceEeCCCCHHHHHHHHHHHHHhCCCceeccCCCCCCeecCCCccccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999996666689999999999999999998876 89999999999
Q ss_pred HHHHhCCCcccccceeccccccccCC-ChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCE
Q 008202 224 IAALLTPQSGFYYDMWVDGEQIMTAE-PPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDI 302 (574)
Q Consensus 224 l~~~l~p~~~ay~e~wld~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DI 302 (574)
|+++|.|+|+||+|+|||++++++.+ .+.+...++++.+|+.+..++||+|+..+|||||||+||||++||+++++|||
T Consensus 163 i~~~~~p~t~a~~e~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPRKFKi~vsg~~~~~~~~~~nDl 242 (577)
T TIGR02042 163 IADLLTPQSGAYYELWLDGEKVMSAEPDPEVVAARNDNSHGTNFADSPEPLYGTQYLPRKFKIAVTVPGDNSIDLFTQDI 242 (577)
T ss_pred HHHhhcccccchhheecccccccccccchhhhhhhhcccccccccCCccccccccCCCCCceEEEEcCCCCcccceecce
Confidence 99999999999999999999998764 35566777777777767667899998889999999999999999999999999
Q ss_pred EEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccCCCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHh
Q 008202 303 GVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSW 382 (574)
Q Consensus 303 G~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~ 382 (574)
||+++.+++|+..||+|+||||+|++|+++.|+|++|+.++||++||+++++++|+.+|+|||+|+||+++||||+|++|
T Consensus 243 gf~a~~~~~g~~~Gf~v~vGGglg~~~~~~~t~p~~a~~l~~v~~e~v~~~~~av~~~~rd~G~R~nR~~aRlk~li~~~ 322 (577)
T TIGR02042 243 GLVVVSNERGELEGFNIYVGGGMGRTHNKEETFARLADPLGYVPKEDIYYAVKAIVATQRDYGDRDDRRHARMKYLISDW 322 (577)
T ss_pred EEEEEEeCCCcEeeEEEEEecccCCCCCCccccchhccccCcCCHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHH
Confidence 99999875566679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhCCCCCCCCCCCcccccccCCeeeecCCcEEEEEEeCCCCcCHH----HHHHHHHHHHHhCCeEEEcc
Q 008202 383 GIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGK----MKKTLREIIEKYNLNVRITP 458 (574)
Q Consensus 383 G~e~fr~~ve~~~g~~~~~~~~~~~~~~~~~~G~~~q~dG~~~v~v~vp~Grl~~~----~l~~La~la~~yg~~irlT~ 458 (574)
|+|+|+++|++++++.+++..+.+.+...+|+||++|++|.|++++++|+|+|+++ +++.|++||++|+.++|||+
T Consensus 323 G~e~f~~~ve~~~~~~~~~~~~~~~~~~~d~~G~~~q~dG~~~v~l~vp~Grl~~~~~~~l~~~LaeIA~~yg~~irlT~ 402 (577)
T TIGR02042 323 GIEKFREVVEQYFGKKIAPVRELPEFEYKDYLGWHEQGDGKWFLGLHIDSGRVKDDGNWQLKKALREIVEKYNLPVRLTP 402 (577)
T ss_pred CHHHHHHHHHHHhccccCCcccCCcccccccceEEECCCceEEEEEEecCceecCCchHHHHHHHHHHHHHhCCCEEEcC
Confidence 99999999999999998887777777888999999999999999999999999995 45899999999998999999
Q ss_pred CCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCc
Q 008202 459 NQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNES 538 (574)
Q Consensus 459 ~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ 538 (574)
+|||+|++|+++++++|.+.|++.||......++.+++++||+|+++|+++++||++.++.++++++++++..+++ +.+
T Consensus 403 ~Qnl~l~~V~~~~~~~i~~~L~~~Gl~~~~~~~~~~~~~~aC~G~~~C~lal~et~~~~~~l~~~l~~l~~~~~l~-~~~ 481 (577)
T TIGR02042 403 NQNIILYDIQPEWKRAITTVLAQRGVLQPEAIDPLNRYAMACPALPTCGLAITESERAIPGILKRIRALLEKVGLP-DEH 481 (577)
T ss_pred CCCeEECCCCHHHHHHHHHHHHhcCCCCCCCCCccceeeEeCCCcccccCchHHHHHHHHHHHHHHHHHHHhcCCC-CCC
Confidence 9999999999999999999999999987655788999999999999999999999999999999999988888875 478
Q ss_pred eEEEEecCCCcCCCCCcccEEEEeecCCceEEEE
Q 008202 539 VVIRVTGCPNGCARPYMAELGLVGDGPNSYQVFQ 572 (574)
Q Consensus 539 ikI~iSGCpn~Ca~~~~aDIGlvG~~~g~Y~l~l 572 (574)
++||||||||+|++|+++||||+|++.++|+||+
T Consensus 482 i~I~vSGCpn~Ca~p~iaDIG~vG~~~~~y~l~l 515 (577)
T TIGR02042 482 FVVRMTGCPNGCARPYMAELGFVGSAPNSYQVWL 515 (577)
T ss_pred cEEEEECCCccccCCCcCcEEEECCCCCcEEEEE
Confidence 9999999999999999999999999888899997
No 3
>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.2e-121 Score=942.99 Aligned_cols=537 Identities=48% Similarity=0.793 Sum_probs=490.7
Q ss_pred cccccccccccccccc--cc-cccccCCCCCccce--eecccCCCCCCcccccCCCCChhhhhhhccCCCccchHHHhhh
Q 008202 20 IRSFNGLKPSHSLSIR--TN-LRAFPVPYASRSSV--VRAVSTPVKPETETKTETKRSKVEIIKEQSNFIRYPLNEELLT 94 (574)
Q Consensus 20 ~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~k~~~~E~~K~~~~~l~~~~~~~~~~ 94 (574)
+..+.-++..+.+.+| +. .+..|..+.+..++ .+|+.++..|.+.. ++|+.++|.||++|+++|+++.+++.+
T Consensus 26 l~r~~~l~a~a~vtlglg~d~d~~~p~ta~s~~~p~l~eal~~~~~p~d~d--~~kr~~~e~ike~snflr~~iseelld 103 (638)
T KOG0560|consen 26 LVRLAQLTAPALVTLGLGVDQDPDGPRTAYSDWEPILWEALGKGINPQDKD--EPKRETNEDIKENSNFLRGTISEELLD 103 (638)
T ss_pred HHHHHHhcCCceeeeccCCCCCCCCccccccccChHHHHHhcCCCCccccc--cCCcccHHHHHhhcchhhcccchhhhh
Confidence 4556667776666666 22 22223322223344 78999998887754 789999999999999999999999987
Q ss_pred cC-CCCChhHHHHhhhceeEeeccCcccCCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCC
Q 008202 95 DA-PNVNESATQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVL 173 (574)
Q Consensus 95 ~~-~~~~~~~~~~~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~ 173 (574)
+. .++++.|.|++||||+|+|+|||.|.++.|+||+|.|+|+|+.|++||++|++|+++||+|+++|||||++|+|||.
T Consensus 104 es~~~v~esdvqL~KfhGiy~qddRd~r~gr~y~FM~R~klP~Gvtt~qq~l~lddls~k~G~gtlklTTRqtfQihGVl 183 (638)
T KOG0560|consen 104 ESKGSVDESDVQLIKFHGIYHQDDRDIRYGRSYSFMMRAKLPNGVTTPQQWLALDDLSDKYGNGTLKLTTRQTFQIHGVL 183 (638)
T ss_pred cCcCCcchhHHHHHHHhhhhhhcchhhhcchhhhhhheecCCCCCCCHHHHHHHHHHHHhhCCceeeeeeeceeeeeeee
Confidence 75 46999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHcCCCCCCCCCCCcceecCCCCCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhh
Q 008202 174 KKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEV 253 (574)
Q Consensus 174 ~~~l~~i~~~L~~~~g~t~~a~gd~~RNV~acp~~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~ 253 (574)
+.||+++++.|++.+++|+++|||++|||+++.+|.....+.+..+.++.|+++|.|+|++|||+|++++++
T Consensus 184 kknlk~~lrgi~kv~ltTL~a~gD~~RNv~~sa~P~~~kd~~qi~dt~k~is~~llP~T~~y~e~w~e~~q~-------- 255 (638)
T KOG0560|consen 184 KKNLKETLRGIAKVGLTTLGACGDVNRNVVGSANPINGKDHEQIVDTAKNISALLLPYTNLYHEFWTEGPQV-------- 255 (638)
T ss_pred hhhhHHHHHHHHHHHhhhhhhhccccccccccCCCccccCHHHHHHHHHHHhhhhCCccchHHHHhhcCcHH--------
Confidence 999999999997777799999999999999998888888889999999999999999999999999998664
Q ss_pred hhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccc
Q 008202 254 VKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLET 333 (574)
Q Consensus 254 ~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~ 333 (574)
+.+|+ .+|+++-++ |||||.++||||||++|+++|+|.+++++||||++++.+. +.+.||||+||||||++|++++
T Consensus 256 ve~rk--v~Gn~~~d~-epiygptyLPRKfkv~Vavp~dn~vd~~tnDva~v~i~en-d~~~GfNv~VGGgmgtthr~ek 331 (638)
T KOG0560|consen 256 VEARK--VHGNADVDN-EPIYGPTYLPRKFKVCVAVPPDNDVDVLTNDVALVAINEN-DGVFGFNVLVGGGMGTTHRNEK 331 (638)
T ss_pred hhhhc--cCCCccccc-ccccCcccCccceeEEEecCCCccccccccceeEEEEecc-CCceeeEEEeccccCCcccchh
Confidence 34454 678888766 9999999999999999999999999999999999999954 6678999999999999999999
Q ss_pred cccccccccCCCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHhhhhHHHHHHHHHhCCCCCCCC--CCCccccc
Q 008202 334 TFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFR--QLPEWEFK 411 (574)
Q Consensus 334 t~p~la~~l~~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve~~~g~~~~~~~--~~~~~~~~ 411 (574)
|+||+|..+|||+.|+++++++||+.+|||+|+|+||+++||||+|+.||++.||++||+|+|++|+|.+ +.+.|++.
T Consensus 332 t~prla~~~gyVptddIl~~vkaIli~qRd~G~R~nRk~aRmkylid~lGVe~Fr~~VEe~~g~KfE~~r~~~~~~we~~ 411 (638)
T KOG0560|consen 332 TYPRLAELDGYVPTDDILPLVKAILIVQRDHGDRGNRKHARMKYLIDELGVEGFRTKVEEYMGKKFEPGRSEPNKQWERR 411 (638)
T ss_pred hcccccccccccchhhhHHHhhhheeeehhccCccchhhhhhhhhHHhhhhHHHHHHHHHHhcccCCcCcCCcchhhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988 77889999
Q ss_pred ccCCeeeecCCcEEEEEEeCCCCcCHHHHHH-HHHHHHHhCCeEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCC
Q 008202 412 SHLGWHEQGDGGLFCGLHVDNGRIAGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYV 490 (574)
Q Consensus 412 ~~~G~~~q~dG~~~v~v~vp~Grl~~~~l~~-La~la~~yg~~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~ 490 (574)
||+|||+|++|.|+++++|++||+.+.+++. |+++++.+..++|||++|||+|+||.+++.+.|.+.|+..++.... .
T Consensus 412 dyfGwh~q~~gl~f~glhVe~GRve~l~~ktglRev~e~~~~e~rlT~nQniii~nv~te~~~~i~~~la~~~l~npe-f 490 (638)
T KOG0560|consen 412 DYFGWHKQEEGLSFVGLHVENGRVEALDMKTGLREVAEYGSGELRLTVNQNIIIPNVETEKTEAILQELALYKLDNPE-F 490 (638)
T ss_pred cccccccCCCCceEEEEEccccccccchhhhHHHHHHHhhcceeeecccccEEecccchhhhHHHHHHHHHhccCCcc-h
Confidence 9999999999999999999999999988887 6666666556899999999999999999999999999999998865 4
Q ss_pred CCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeecCCceEE
Q 008202 491 DPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQV 570 (574)
Q Consensus 491 ~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~~g~Y~l 570 (574)
+.++.+++||+|+|+|++|++||++.+|+|.+++++.|+.+|++.| +|.+|||||||+|+||++|||||+|++|+.|++
T Consensus 491 s~L~~ss~AC~g~p~CglAi~Eser~lpkii~~ve~~~e~vgl~~d-sIvmr~TGCPNgCsrp~vaeig~vGkapnty~~ 569 (638)
T KOG0560|consen 491 SGLRLSSVACVGLPTCGLAIAESERRLPKIITEVERMFEEVGLPRD-SIVMRMTGCPNGCSRPWVAEIGLVGKAPNTYNL 569 (638)
T ss_pred hhhhhhhhcccCCCcchhHHHHHhhchhHHHHHHHHHHHHhCCCCC-ceEEEeccCCCCCCcchhhheeecccCCcceee
Confidence 6688999999999999999999999999999999999999999976 699999999999999999999999999999999
Q ss_pred EE
Q 008202 571 FQ 572 (574)
Q Consensus 571 ~l 572 (574)
++
T Consensus 570 ~l 571 (638)
T KOG0560|consen 570 ML 571 (638)
T ss_pred ec
Confidence 86
No 4
>PRK13504 sulfite reductase subunit beta; Provisional
Probab=100.00 E-value=1.9e-110 Score=933.65 Aligned_cols=485 Identities=47% Similarity=0.781 Sum_probs=446.7
Q ss_pred CCCCChhhhhhhccCCCccchHHHhhhc-CCCCChhHHHHhhhceeEeeccCcccC-------CccceEEEEEEcCCccc
Q 008202 68 ETKRSKVEIIKEQSNFIRYPLNEELLTD-APNVNESATQLIKFHGSYQQYNRDERG-------AKSYSFMLRTKNPCGKV 139 (574)
Q Consensus 68 ~~k~~~~E~~K~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~k~~G~y~Q~~r~~r~-------~~~~~fmvRiripgG~l 139 (574)
.+|+||+|+||.+|++|++++.++|++. .+++++++++++||||+|+|+|||.|. +++|.||+|||+|+|+|
T Consensus 8 ~~~~~~~E~~K~~~~~l~~~i~~~~~~~~~~~~~~~~~~~lk~~G~y~q~~r~~r~~~~~~~~~~~~~fm~RvriP~G~l 87 (569)
T PRK13504 8 EGKLSDVERIKLESNYLRGTIAEELNDGLTGGFSEDDFQLLKFHGSYQQDDRDIRAERAEQKLEPAYQFMLRCRLPGGVI 87 (569)
T ss_pred CCCCChHHHhhccCcCccchHHHHHHhhccCCCCHHHHHHHhheeeeEecchhhhhhhcccccCcCcceEEEEecCCCcc
Confidence 5689999999999999998898988764 578999999999999999999988763 34578999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcceecCCCCCCchhhhhHH
Q 008202 140 SNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAPLVRKDYLFAQ 218 (574)
Q Consensus 140 t~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g-~t~~a~gd~~RNV~acp~~~~~~~~~d~~ 218 (574)
|++||++|++||++||+|++|||||||||||||+++++++++++| .+.| ++.++|||++|||++||+++|..++.|++
T Consensus 88 t~~Ql~~la~la~~yg~G~i~lTtRQniQL~gI~~~~l~~i~~~L-~~~gl~t~~a~gd~~RNV~~~p~~~~~~~~~d~~ 166 (569)
T PRK13504 88 TPQQWLALDKLADEYGNGTLRLTTRQTFQFHGILKKNLKPVIQTI-NSVLLDTLAACGDVNRNVMCTPNPYESRLHAEAY 166 (569)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEecccceeecCCchHhHHHHHHHH-HHcCCCcccccCCCCCceecCCCcccccchHHHH
Confidence 999999999999999999999999999999999999999999999 6666 77899999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCCCCCcccc
Q 008202 219 KTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDIL 298 (574)
Q Consensus 219 ~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~ 298 (574)
+++.+|.++|.|++.+|+|+|+++++...... ...+|+|+..+|||||||+||||+++|++++
T Consensus 167 ~la~~l~~~l~~~~~~y~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~LPrKfKiavsgc~~~c~~~~ 229 (569)
T PRK13504 167 EWAKKISDHLLPRTRAYAEIWLDGEKVATFSG-----------------TEEEPIYGKTYLPRKFKIAVAVPPDNDVDVY 229 (569)
T ss_pred HHHHHHHHHhccccchhHHhhhcCcccccccc-----------------cccCcccccCCCCCceEEEEEcCCccccCce
Confidence 99999999999999999999998765432100 0125678878999999999999999999999
Q ss_pred cCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccCCCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHH
Q 008202 299 TNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYL 378 (574)
Q Consensus 299 ~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~l 378 (574)
+|||||+++.++ |++.||+|||||++|++|++..++|++|+.+++|++|++++++++|+++|+++|+|.+|+++||+|+
T Consensus 230 ~~DiG~~~~~~~-g~~~Gf~v~vGGg~g~~~~~~~~~p~~a~~l~~v~~e~v~~~~~ai~~~~~~~G~r~~r~~aRlk~l 308 (569)
T PRK13504 230 ANDLGFVAIAEN-GKLVGFNVLVGGGMGMTHGDKETYPRLADELGYVPPEDVLDVAEAVVTTQRDYGNRTDRKNARLKYT 308 (569)
T ss_pred ecceEEEEEecC-CcEEEEEEEEEccccCCCCCCCCCCccccccCccCHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHH
Confidence 999999999764 6567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHhCCCCCCCCCCCcccccccCCeeeecCCcEEEEEEeCCCCcCHH----HHHHHHHHHHHhCCeE
Q 008202 379 ISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGK----MKKTLREIIEKYNLNV 454 (574)
Q Consensus 379 i~r~G~e~fr~~ve~~~g~~~~~~~~~~~~~~~~~~G~~~q~dG~~~v~v~vp~Grl~~~----~l~~La~la~~yg~~i 454 (574)
|++||+++|++++++++++++++..+.+.+...+|+||++|++|+|+|++++|+|+|+++ +++.|+++|++|+.+|
T Consensus 309 v~~~G~e~f~~~v~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~G~~~v~v~vp~Grl~~~~~~~~l~~La~iA~~yg~~i 388 (569)
T PRK13504 309 LERVGLDWFKAEVERRAGKKLEPARPYEFTGRGDRLGWVEGIDGKWHLTLFIENGRIKDYPGRPLKTGLREIAKIHKGDF 388 (569)
T ss_pred HHHHhHHHHHHHHHHHhcCccCCCCCCCccCccceeEEEecCCCcEEEEEEecCEEecCCCcHHHHHHHHHHHHHhCCEE
Confidence 999999999999999999988876665556677899999999999999999999999999 9999999999999889
Q ss_pred EEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCC
Q 008202 455 RITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLK 534 (574)
Q Consensus 455 rlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~ 534 (574)
|||++|||+|++|+++++++|.+.|+++|+......++++++++||+|+++|++|++||+++++.|+++|++.+...+++
T Consensus 389 rlT~~Qnl~l~~i~~~~~~~l~~~L~~~gl~~~~~~~~~~~~ivAC~G~~~C~~a~~~t~~~a~~l~~~l~~~~~~~~l~ 468 (569)
T PRK13504 389 RLTANQNLIIANVPPSDKAKIEALLREYGLIDGVEESPLRRNSMACVALPTCGLAMAEAERYLPSFIDRIEALLAKHGLS 468 (569)
T ss_pred EEeCCCCEEEcCCCHHHHHHHHHHHHhCCCCCCCCCCCceeceeecCCcccccchhhhHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999987655588889999999999999999999999999999999988777662
Q ss_pred CCCceEEEEecCCCcCCCCCcccEEEEeecCCceEEEE
Q 008202 535 YNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVFQ 572 (574)
Q Consensus 535 ~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~~g~Y~l~l 572 (574)
+.+++||||||||+|++|+++||||+|+..+.|+||+
T Consensus 469 -~~~i~I~vSGCpn~Ca~~~iaDIG~vG~~~~~y~i~l 505 (569)
T PRK13504 469 -DEHIVIRMTGCPNGCARPYLAEIGLVGKAPGRYNLYL 505 (569)
T ss_pred -CCceEEEEeCCcccccccccCcEEEEecCCCeEEEEE
Confidence 3689999999999999999999999999888899997
No 5
>TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component. In cyanobacteria and plant species, sulfite reductase ferredoxin (EC 1.8.7.1) catalyzes the reduction of sulfite to sulfide.
Probab=100.00 E-value=1e-102 Score=866.23 Aligned_cols=475 Identities=42% Similarity=0.754 Sum_probs=431.1
Q ss_pred hhhhhccCCCccchHHHhhhc-CCCCChhHHHHhhhceeEeeccCcccC-------CccceEEEEEEcCCccccHHHHHH
Q 008202 75 EIIKEQSNFIRYPLNEELLTD-APNVNESATQLIKFHGSYQQYNRDERG-------AKSYSFMLRTKNPCGKVSNQLYLT 146 (574)
Q Consensus 75 E~~K~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~k~~G~y~Q~~r~~r~-------~~~~~fmvRiripgG~lt~~ql~~ 146 (574)
|+||.+|+||++++.++|.+. ...+++++++++||||+|+|+|||.|. ++.|.||||+|+|+|+||++|+++
T Consensus 1 e~~k~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lk~~G~y~q~~~~~~~~~~~~~~~~~~~fmvRvripgG~lt~~Ql~~ 80 (541)
T TIGR02041 1 ERIKEESNYLRGTLLESLADPLTGGFSGDDFQLIKFHGMYQQDDRDLRAERAEQKLEPAYQFMLRCRLPGGVITPKQWLA 80 (541)
T ss_pred CcchhccccchhHHHHHHhhhhhcCCCHHHHHHHHHheeeeeccccchhhhcccccCCcceeEEEEecCCcEECHHHHHH
Confidence 899999999999999989765 458999999999999999999998664 355789999999999999999999
Q ss_pred HHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcceecCCCCCCchhhhhHHHHHHHHH
Q 008202 147 MDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIA 225 (574)
Q Consensus 147 la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g-~t~~a~gd~~RNV~acp~~~~~~~~~d~~~la~~l~ 225 (574)
|++||++||+|+++||||||||||||+.+++++++++| .++| ++.++|||++|||+|+|.|+|..+..|++++|.+|+
T Consensus 81 la~ia~~yg~g~i~lTtRQniQl~gI~~~~l~~v~~~L-~~~GL~t~~a~gd~~RnV~c~~~p~~~~~~~e~~~~a~~l~ 159 (541)
T TIGR02041 81 IDKFAREYGNGSIRLTTRQTFQFHGILKRNLKAVHQAI-HSAGLDSIATCGDVNRNVLCTSNPYESELHQEAYEWAKKIS 159 (541)
T ss_pred HHHHHHHhCCCeEEEecccceEEcCCChhHHHHHHHHH-HHcCCCccccCCCCCCceeCCCCcccCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 7777 779999999999997677899999999999999999
Q ss_pred HHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEE
Q 008202 226 ALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVV 305 (574)
Q Consensus 226 ~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~v 305 (574)
++|.+++.+|+++|+++..+... ...+|+|+..+|||||||+||||+++|+++++|||||+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~LPrKfKi~isg~~~~~~~~~~~DiG~~ 220 (541)
T TIGR02041 160 EHLLPRTRAYHEIWLDEKKVAGT-------------------EEVEPIYGPTYLPRKFKTGVVIPPINDVDVYANDLGFV 220 (541)
T ss_pred HHhccCchhHHHHhhhcccccCC-------------------cccCccccccCCCCCcEEEEECCCCccccccccceEEE
Confidence 99999999999999876443210 01246787778999999999999999999999999999
Q ss_pred EEecCCCcceeEEEEEccCCCCcCCccccccccccccCCCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHhhhh
Q 008202 306 VVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIE 385 (574)
Q Consensus 306 a~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e 385 (574)
++.++ |+..||+|+|||++|+++++..|+|++|..++||++|++++++++|+++|+++|+|.+|+++||+|+|++||++
T Consensus 221 a~~~~-g~~~Gf~v~vGGg~g~~~~~~~~~p~~a~~l~~v~~e~v~~~~~ai~~~~~~~g~r~~r~~aRlk~li~~~G~e 299 (541)
T TIGR02041 221 AIADN-GKLIGFNVLIGGGLGMTHGNKATYPRLANEIGFIPPEHTLAVAEAIVTTQRDFGNRTDRKNARTKYTIDRMGLD 299 (541)
T ss_pred EEEeC-CcEEEEEEEEeccccCCCCCcCCCCccccccCCCCHHHHHHHHHHHHHHHHHhCCccchhhhhHHHHHHHhCHH
Confidence 98874 55679999999999998888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCCcccccccCCeeeecCCcEEEEEEeCCCCcCH----HHHHHHHHHHHHhCCeEEEccCCc
Q 008202 386 KFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAG----KMKKTLREIIEKYNLNVRITPNQN 461 (574)
Q Consensus 386 ~fr~~ve~~~g~~~~~~~~~~~~~~~~~~G~~~q~dG~~~v~v~vp~Grl~~----~~l~~La~la~~yg~~irlT~~Qn 461 (574)
+|+++|++++++++.+..+.......+|+||++|++|+|++++++|+|+|++ .+++.|+++|+.|+.+||+|+|||
T Consensus 300 ~f~~~v~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~G~~~v~v~~p~G~l~~~~~~~~l~~la~iA~~~~~~irlT~~Qn 379 (541)
T TIGR02041 300 TFKAEVERRAGITLEPARPYVFTHRGDRYGWVKGIDGNWHLTLFIESGRIADYPDKPLMTGLREIAKIHKGDFRITPNQN 379 (541)
T ss_pred HHHHHHHHHhCCCCCCCCCccccccccccCeecCCCCcEEEEEEecCceeecCccHHHHHHHHHHHHhcCCeEEEeCCCC
Confidence 9999999999988776555444456789999999999999999999999995 499999999987766899999999
Q ss_pred EEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEE
Q 008202 462 IILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVI 541 (574)
Q Consensus 462 lil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI 541 (574)
|+|+||++++++++.+.|+++|+.+.. .++.+++++||+|+++|++|++||+.+++.|+++|++.+.+.+.. +.+++|
T Consensus 380 l~l~~v~~~~~~~l~~~l~~~gl~~~~-~~~~~~~vvAC~G~~~C~~a~~dT~~~a~~l~~~l~~~~~~~~~~-~~~~~I 457 (541)
T TIGR02041 380 LIIANVPEGGKAKIEALARQYGLIDGK-VTALRRNSMACVALPTCPLAMAEAERYLPDFIDKLDNIMEKHGLA-DEEIVL 457 (541)
T ss_pred EEEcCCCHHHHHHHHHHHHHcCCCCCC-CCceeeccEECCCccchhhhHHHHHHHHHHHHHHHHHHHHhcCCC-CCceEE
Confidence 999999999999999999999997643 567778999999999999999999999999999999888766643 468999
Q ss_pred EEecCCCcCCCCCcccEEEEeecCCceEEEE
Q 008202 542 RVTGCPNGCARPYMAELGLVGDGPNSYQVFQ 572 (574)
Q Consensus 542 ~iSGCpn~Ca~~~~aDIGlvG~~~g~Y~l~l 572 (574)
|||||||+|++|+++||||+|+..+.|+||+
T Consensus 458 ~iSGCpn~Ca~~~~adIG~~G~~~~~y~l~l 488 (541)
T TIGR02041 458 RMTGCPNGCGRPYLAEIGLVGKAPGRYNLML 488 (541)
T ss_pred EEecCCccccccccCcEEEEEeccceEEEEE
Confidence 9999999999999999999999888899997
No 6
>PRK09567 nirA ferredoxin-nitrite reductase; Reviewed
Probab=100.00 E-value=2.1e-98 Score=837.94 Aligned_cols=441 Identities=25% Similarity=0.387 Sum_probs=388.1
Q ss_pred cCCCCChhhhhhhccCCCcc-chHHHhhhcCCCCC-hhHHHHhhhceeEeeccCcccCCccceEEEEEEcCCccccHHHH
Q 008202 67 TETKRSKVEIIKEQSNFIRY-PLNEELLTDAPNVN-ESATQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLY 144 (574)
Q Consensus 67 ~~~k~~~~E~~K~~~~~l~~-~~~~~~~~~~~~~~-~~~~~~~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql 144 (574)
+.+|+||+|+||++|++|+. +.+.+++... .++ +++.++|||||+|+|... .+.||+|||+|+|+||++||
T Consensus 61 ~~~kl~~~E~~K~~~~~l~~~~~l~~~~~~~-~~~~~~~~~~~k~~G~y~~~~~------~~~fM~RvripgG~lt~~Q~ 133 (593)
T PRK09567 61 AGKKLCDQEKWKREENPFDAWDRLKAQAAAG-AFPKPADNFRWKYHGLFYVAPA------QDSYMCRLRIPNGILTHWQF 133 (593)
T ss_pred ccCCCCHHHHHhhcCCcchhhhHHHHHHhcC-CCCChhhhhhhccceEEEEccc------CCeEEEEEEeCCeecCHHHH
Confidence 45789999999999999983 2233333332 454 777889999999998643 36899999999999999999
Q ss_pred HHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcceecCCCC-CCchhhhhHHHHHH
Q 008202 145 LTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAP-LVRKDYLFAQKTAE 222 (574)
Q Consensus 145 ~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g-~t~~a~gd~~RNV~acp~~-~~~~~~~d~~~la~ 222 (574)
++|++||++||+|++|||||||||||||+++|+++++++| .++| ++.++|||++||||+||++ .|+.++.|+++++.
T Consensus 134 ~~la~ia~~yg~g~~~lTTRq~iQlhgI~~~d~~~i~~~l-~~~GL~t~~a~gD~~RNV~~~P~ag~~~~e~~D~~~~a~ 212 (593)
T PRK09567 134 AGLADLADRHGGGYSHVTTRANLQLREIPPEHAVPVLEGL-VDLGLTARGSGADNIRNVTGSPTAGIDPQELLDTRPYAR 212 (593)
T ss_pred HHHHHHHHHHCCCeEEEeccccEEeccCCHHHHHHHHHHH-HHCCCCCCCCCCCCCCCcCCCCCCCCChhhccchHHHHH
Confidence 9999999999999999999999999999999999999999 7777 7889999999999999985 89999999999999
Q ss_pred HHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCE
Q 008202 223 NIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDI 302 (574)
Q Consensus 223 ~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DI 302 (574)
++.++|.. + +++| +|||||||+||||+++|..+.+|||
T Consensus 213 ~l~~~~~~--------------------------------------~-~~~~---~LPrKfkiaisg~~~~~~~~~~nDi 250 (593)
T PRK09567 213 EWHHHILN--------------------------------------D-RSLY---GLPRKFNVAFDGGGRIATLEDTNDI 250 (593)
T ss_pred HHHHHHhC--------------------------------------C-chhc---CCCCCeEEEEECCCcccccccccce
Confidence 99887641 1 2344 4999999999999999999999999
Q ss_pred EEEEEecCCCcc----eeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHH
Q 008202 303 GVVVVSDENGEP----QGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKY 377 (574)
Q Consensus 303 G~va~~~~~g~~----~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~ 377 (574)
||+++.+++|.. .||+|++||++|.. .++..++ +|++|++++++++|+++|+|+|+|+||+++||||
T Consensus 251 gf~a~~~~~g~~~~~g~gf~v~vGG~~g~~--------~~a~~~~~~v~~e~v~~~~~Ai~~~f~d~G~R~~R~~aRlk~ 322 (593)
T PRK09567 251 GFQAVRVLEGAGVAPGVYFRLVLGGITGHK--------DFARDTGVLLRPEEATAVADAIVRVFIENGDRTNRKKARLKY 322 (593)
T ss_pred eeEEEEecCCccccccceEEEEEecccCCC--------cchhhhhccCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHH
Confidence 999987644431 47999999999852 4677888 6999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHhCCCCCCC-----CCCCcccccccCCeeeec-CCcEEEEEEeCCCCcCHHHHHHHHHHHHHhC
Q 008202 378 LISSWGIEKFRSVVEQYYGKKFEPF-----RQLPEWEFKSHLGWHEQG-DGGLFCGLHVDNGRIAGKMKKTLREIIEKYN 451 (574)
Q Consensus 378 li~r~G~e~fr~~ve~~~g~~~~~~-----~~~~~~~~~~~~G~~~q~-dG~~~v~v~vp~Grl~~~~l~~La~la~~yg 451 (574)
+|++||+|+|++++++++++++++. .+.+.+...+|+|||+|+ +|.|+|++++|+|+|+++||+.|+++|++||
T Consensus 323 li~~~G~e~f~~~ve~~~~~~l~~~~~~~~~~~~~~~~~~~~Gv~~Qkq~G~~~v~v~vp~Grlt~~ql~~LA~iA~~yg 402 (593)
T PRK09567 323 VLDAWGFDKFLEAVEEKLGRPLTRVPAEAVAPRPAADRFAHVGVHPQKQPGLNWIGVVLPVGRLTTDQMRGLAKIAARYG 402 (593)
T ss_pred HHHHHCHHHHHHHHHHHhcccccccchhhcCCCcchhccccceeeccCCCCceEEEEECCCCccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999887532 233345667899999999 5999999999999999999999999999998
Q ss_pred C-eEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHh
Q 008202 452 L-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEK 530 (574)
Q Consensus 452 ~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~ 530 (574)
. +||||+||||+|++|+++++++|.+.|.+.||... .++.+++++||+|+++|++|++||+++++.|+++|++.+
T Consensus 403 ~g~irlT~~Qni~l~~V~~~~~~~l~~~L~~~Gl~~~--~~~~r~~~vAC~G~~~C~~a~~dT~~~a~~l~~~l~~~~-- 478 (593)
T PRK09567 403 DGEIRLTVWQNLLISGVPDADVAAVEAAIEALGLTTE--ASSIRAGLVACTGNAGCKFAAADTKGHALAIADYCEPRV-- 478 (593)
T ss_pred CCEEEEeCCCCeEEcCCCHHHHHHHHHHHHHcCCCCC--CcceeeccEecCCCCCCCccHhhHHHHHHHHHHHHHHhc--
Confidence 6 79999999999999999999999999999999874 355666799999999999999999999999999887654
Q ss_pred cCCCCCCceEEEEecCCCcCCCCCcccEEEEeec--------CCceEEEE
Q 008202 531 VGLKYNESVVIRVTGCPNGCARPYMAELGLVGDG--------PNSYQVFQ 572 (574)
Q Consensus 531 ~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~--------~g~Y~l~l 572 (574)
++ +.+++||||||||+|++|+++||||+|.. .++|+||+
T Consensus 479 -~l--~~~ikI~vSGCpn~Ca~~~iaDIGfvG~~~~~~~g~~~~gy~v~l 525 (593)
T PRK09567 479 -AL--DQPVNIHLTGCHHSCAQHYIGDIGLIGAKVAVSEGDTVEGYHIVV 525 (593)
T ss_pred -CC--CCCcEEEEECCCccccccccCCEEEEeeEeccCCCCccceEEEEE
Confidence 44 46899999999999999999999999963 25799997
No 7
>COG0155 CysI Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-96 Score=795.84 Aligned_cols=439 Identities=40% Similarity=0.689 Sum_probs=396.6
Q ss_pred CCChhhhhhhccCCCccchHHHhhhc-CCCCChhHHHH-hhhceeEeeccCcccCCccceEEEEEEcCCccccHHHHHHH
Q 008202 70 KRSKVEIIKEQSNFIRYPLNEELLTD-APNVNESATQL-IKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTM 147 (574)
Q Consensus 70 k~~~~E~~K~~~~~l~~~~~~~~~~~-~~~~~~~~~~~-~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~l 147 (574)
+.+ +|++|+++++++.++.+.+.+. ...+++++++. +||||+|+| +++|.||+|+|+|+|.||++||++|
T Consensus 6 ~~~-~e~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~y~q-------~~~~~~MlRvriPgG~ls~~q~r~l 77 (510)
T COG0155 6 PLD-NERLKAESNFLRGTIEDQLSDRLSGGLCEDDFRPLLKFDGLYLQ-------EPDHAFMLRVRIPGGILSPKQLRAL 77 (510)
T ss_pred CcC-HHHHhhhhhhhHHHHHHHhhhccccCCCHHHHHHHHhhcceeec-------ccccceeEEEecCCCccCHHHHHHH
Confidence 344 9999999999998887777653 46899999997 999999999 2458999999999999999999999
Q ss_pred HHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcceecCCC-CCCchhhhhHHHHHHHHH
Q 008202 148 DDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPA-PLVRKDYLFAQKTAENIA 225 (574)
Q Consensus 148 a~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g-~t~~a~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~ 225 (574)
++||++||+|+++||||||||||||.++|++++++.| .++| .++++|||++|||+++|. .....++.|.++
T Consensus 78 ~~iA~~yg~g~~~iTtRQniQ~hgI~~~d~~~i~~~l-~~vgl~ti~~~gd~~Rnv~~~P~ag~~~~ei~D~r~------ 150 (510)
T COG0155 78 ADIARRYGRGTIELTTRQNIQFHGIRKKDVPEILAEL-ASVGLHTIATAGDVARNVTGDPLAGLDADEIADPRP------ 150 (510)
T ss_pred HHHHHHhCCCeEEEeecccceecccccccHHHHHHHH-HHcCCcchhhccccccceecCcccccchhhcccchh------
Confidence 9999999999999999999999999999999999999 6666 999999999999999874 355555555553
Q ss_pred HHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEE
Q 008202 226 ALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVV 305 (574)
Q Consensus 226 ~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~v 305 (574)
..+|.++|+++++ +..+|||||||+|+||++||+++++|||||+
T Consensus 151 ------~~~~~~~~l~~~~------------------------------~~~~LPRKFkiav~g~~~~~v~~~~~Di~~~ 194 (510)
T COG0155 151 ------LAEILRIWLDGEK------------------------------GFAYLPRKFKIAVDGGPDNDVDVLINDIGFV 194 (510)
T ss_pred ------HHHHHHHHhcCcc------------------------------chhcCCcceEEEEecCcccchhhhccceeEE
Confidence 3446688887532 1368999999999999999999999999999
Q ss_pred EEecCCCcceeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHhhh
Q 008202 306 VVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGI 384 (574)
Q Consensus 306 a~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~ 384 (574)
++.+. +++.||+|+||||+|++| |.++..+. +|+++++++++++|+.+|+++|+|.||+++|+||+|++||+
T Consensus 195 a~~~~-~~~~Gf~v~VGGglg~~~------~~~~~~~~~~v~~~~~~~~~~aiv~~~~d~G~R~nr~~aR~k~lv~~~G~ 267 (510)
T COG0155 195 AIKEN-DGLLGFNVLVGGGLGRTH------PKTAPRLAEFVPPEDVLEVVEAIVRVYRDYGRRANRKKARLKYLVEALGV 267 (510)
T ss_pred Eeccc-CCccceEEEEccccccCC------cchhhHHhhccCHHHHHHHHHHHHHHHHhcchhhhhhhhhHHHHHHHhCh
Confidence 99974 455799999999999986 34444444 67889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCCCCCCCCCCcccccccCCeeeecCCcEEEEEEeCCCCcCHHHHHHHHHHHHHhCC-eEEEccCCcEE
Q 008202 385 EKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNII 463 (574)
Q Consensus 385 e~fr~~ve~~~g~~~~~~~~~~~~~~~~~~G~~~q~dG~~~v~v~vp~Grl~~~~l~~La~la~~yg~-~irlT~~Qnli 463 (574)
|+|+++||+++|++|.|.++...+...+|+||++|+||.|++++.+++||+++..+..|++.+++++. +||+|+||||+
T Consensus 268 E~f~~~ve~~~g~~~~~~~~~~~~~~~d~~Gw~~~~~g~~~~g~~v~~Grl~~~~~~~l~~~~~~~~~~eiRlT~~QnLi 347 (510)
T COG0155 268 EKFRREVEPRLGKPFEPARPREFTGNGDHIGWVPQKDGLWHLGLAVPNGRLKAEGLIPLATEAEEIGFGEIRLTPNQNLI 347 (510)
T ss_pred HHHHHHHHHhhCcccCccccccccCCCCceeEEEcCCCcEEEEEecceeeecCccchHHHHHHHHHhhccEEeccCcceE
Confidence 99999999999999999887777888999999999999999999999999999999999999999996 89999999999
Q ss_pred EecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEE
Q 008202 464 LCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRV 543 (574)
Q Consensus 464 l~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~i 543 (574)
|+||++++++.|.+.|.+.||.+ +.++++++++||+|+|+|++|++||++.++.|++++++.++..++ +++|||
T Consensus 348 i~~v~~~~~~~i~~~l~~~Gl~t--~~~~l~~~~~AC~G~p~C~lA~aet~~~a~~i~~~l~~~~~~~~~----~i~i~i 421 (510)
T COG0155 348 IPNVPEAELEAILRILAALGLVT--APSSLRRNSIACVGLPTCALALAETERDAPRIIARLEDLLDKHGL----PITLHI 421 (510)
T ss_pred ecCCCHHHHHHHHHHHHHcCCCC--CCcchhhhcccCCCCCchhhhHhhHHHHHHHHHHHHHhhhcccCC----ceeEEe
Confidence 99999999999999999999998 357788999999999999999999999999999999999877665 599999
Q ss_pred ecCCCcCCCCCcccEEEEeecCCceEEEE
Q 008202 544 TGCPNGCARPYMAELGLVGDGPNSYQVFQ 572 (574)
Q Consensus 544 SGCpn~Ca~~~~aDIGlvG~~~g~Y~l~l 572 (574)
|||||+|++|++++|||+|+.++.||||+
T Consensus 422 sGCpn~Ca~~~~a~Igl~G~~~~~y~v~l 450 (510)
T COG0155 422 SGCPNGCGRPHLAEIGLVGKAKGGYQVYL 450 (510)
T ss_pred ccCcchhcCcccCceeEeeccCcceEEEe
Confidence 99999999999999999999999999997
No 8
>PLN02431 ferredoxin--nitrite reductase
Probab=100.00 E-value=1.6e-93 Score=793.98 Aligned_cols=446 Identities=25% Similarity=0.394 Sum_probs=385.6
Q ss_pred CCCCChhhhhhhccCCCcc---chHHHhhh-cCCCCCh-----hHHH-HhhhceeEeeccCcccCCccceEEEEEEcCCc
Q 008202 68 ETKRSKVEIIKEQSNFIRY---PLNEELLT-DAPNVNE-----SATQ-LIKFHGSYQQYNRDERGAKSYSFMLRTKNPCG 137 (574)
Q Consensus 68 ~~k~~~~E~~K~~~~~l~~---~~~~~~~~-~~~~~~~-----~~~~-~~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG 137 (574)
.+|+||+|++|.+++||.- ..+++++. ..++|++ +|+. +|||+|+|.|+.+. +++||+|||+|+|
T Consensus 72 ~~~ln~~E~~K~~~~~~~~~~~~~i~~~a~~g~~~i~~~~~~~~d~~~r~kw~Gl~~~~~~~-----~~~fMlRvRiPgG 146 (587)
T PLN02431 72 RKGINPQEKVKLEKEPMKLFMENGIEELAKTPFEEIDKSKLSKDDIDVRLKWLGLFHRRKHQ-----YGRFMMRLKLPNG 146 (587)
T ss_pred cccCCHHHHhhcccCcccccchhhHHHHHhcChhhcCcccCChHHHHhhhhheeeeeecCCC-----CCceEEEEecCCc
Confidence 3579999999999999973 13455653 4577877 8875 89999999886542 3689999999999
Q ss_pred cccHHHHHHHHHHHHHhC-CCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcceecCCCC-CCchhh
Q 008202 138 KVSNQLYLTMDDLADQFG-IGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAP-LVRKDY 214 (574)
Q Consensus 138 ~lt~~ql~~la~iA~~yG-~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g-~t~~a~gd~~RNV~acp~~-~~~~~~ 214 (574)
.||++|+++|++||++|| +|+++||||||||||||+.+|+++++++| +++| ++.++|||++|||++||.. .|+.++
T Consensus 147 ~lt~~Qlr~la~ia~~yg~~G~i~iTtRqniQl~gI~~ed~p~i~~~L-~~vGL~t~~a~gd~vRNI~~~P~aG~~~~e~ 225 (587)
T PLN02431 147 VTTSAQTRYLASVIEKYGEDGCADVTTRQNWQIRGVVLPDVPAILKGL-EEVGLTSLQSGMDNVRNPVGNPLAGIDPHEI 225 (587)
T ss_pred ccCHHHHHHHHHHHHHhCCCCeEEEecCcceEeCCCCHHHHHHHHHHH-HHcCCCchhccCCCCCCcccCCCCCCCcccc
Confidence 999999999999999999 58999999999999999999999999999 8888 7788999999999999974 999999
Q ss_pred hhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCCCCC
Q 008202 215 LFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNS 294 (574)
Q Consensus 215 ~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c 294 (574)
.|+++++.+|.++|... |.+||+ | .+|||||||+||||+++|
T Consensus 226 ~Dt~pla~~l~~~~~~~----------------------------------~~~~~~--~--~~LPrKfkiavsG~~~~~ 267 (587)
T PLN02431 226 VDTRPYTNLLSDYITNN----------------------------------GRGNPE--I--TNLPRKWNVCVVGSHDLF 267 (587)
T ss_pred ccHHHHHHHHHHHhhhc----------------------------------ccCCcc--c--ccCCCCeEEEEecCcccc
Confidence 99999999999887421 112343 2 589999999999999999
Q ss_pred cccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHHHHHHHHHHHHhCCCCcchhh
Q 008202 295 VDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYS 373 (574)
Q Consensus 295 ~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~~~ai~~~~rd~g~R~~R~~a 373 (574)
+.+.+|||||+++.++ |. .||+|+|||++|++. +..+..++ ||++|++++++++|+++|+++|+|+||+++
T Consensus 268 ~~~~~nDigf~~~~~~-g~-~Gf~v~vGG~~g~~~------~~~~~~l~~~v~~e~v~~v~~av~~~f~d~G~R~~R~ka 339 (587)
T PLN02431 268 EHPHINDLAYMPATKD-GR-FGFNLLVGGFFSPKR------CAEAIPLDAWVPADDVVPLCKAILEAFRDLGTRGNRQKT 339 (587)
T ss_pred ccccccceEEEEEEEC-Cc-eEEEEEEeCCcCCCC------ccccchhhcccCHHHHHHHHHHHHHHHHHhCCccchhhh
Confidence 9999999999998763 43 599999999998641 33555665 899999999999999999999999999999
Q ss_pred hHHHHHHHhhhhHHHHHHHHHhC-CCCCCCCC----CCcccccccCCeeeecC-CcEEEEEEeCCCCcCHHHHHHHHHHH
Q 008202 374 RMKYLISSWGIEKFRSVVEQYYG-KKFEPFRQ----LPEWEFKSHLGWHEQGD-GGLFCGLHVDNGRIAGKMKKTLREII 447 (574)
Q Consensus 374 Rlk~li~r~G~e~fr~~ve~~~g-~~~~~~~~----~~~~~~~~~~G~~~q~d-G~~~v~v~vp~Grl~~~~l~~La~la 447 (574)
||+|+|++||+++|+++++++++ .+++...+ .+.|...+|+|||+|++ |+|+|++++|+|+|+++||+.||++|
T Consensus 340 Rlk~li~~~G~e~f~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~Gv~~Qk~~G~~~v~v~vp~Grlt~~qL~~LA~lA 419 (587)
T PLN02431 340 RMMWLIDELGVEGFRSEVEKRMPNGELERAASEDLVDKKWERRDYLGVHPQKQEGLSYVGLHVPVGRLQAADMDELARLA 419 (587)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccCCCCcccccccccchhcccceeEEEeeccCCeEEEEEEcCCCCCCHHHHHHHHHHH
Confidence 99999999999999999998884 45654322 12355678999999985 99999999999999999999999999
Q ss_pred HHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHH
Q 008202 448 EKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRA 526 (574)
Q Consensus 448 ~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~ 526 (574)
++||. +||||++|||+|++|++++++++.++|...|+... .++.+++++||+|+++|++++.||+.++.+|++++.+
T Consensus 420 ~~yG~g~irlT~~Qni~i~~V~~~~v~~l~~~l~~~g~~~~--~~~~~r~vvACtG~~~C~~ai~eTk~~A~~L~~~l~~ 497 (587)
T PLN02431 420 DEYGSGELRLTVEQNIIIPNVPNSKVEALLAEPLLQRFSPN--PGLLLKGLVACTGNQFCGQAIIETKARALKVTEELER 497 (587)
T ss_pred HHhCCCeEEEcCCCCEEECCCCHHHHHHHHHHHHhcCCCCC--CCCCccceeECCCccccCccHHHHHHHHHHHHHHHHH
Confidence 99997 79999999999999999999999999887787653 4677899999999999999999999999888888765
Q ss_pred HHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeec----CC----ceEEEE
Q 008202 527 VFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDG----PN----SYQVFQ 572 (574)
Q Consensus 527 ~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~----~g----~Y~l~l 572 (574)
.+ .+ |.+++||||||||+|++|+++||||+|.. .| +|+||+
T Consensus 498 ~~---~l--p~k~kI~vSGCpn~C~~~~iaDIG~vG~~~~~~~g~~v~gf~V~l 546 (587)
T PLN02431 498 LV---EV--PRPVRMHWTGCPNSCGQVQVADIGFMGCMARDENGKAVEGADIFV 546 (587)
T ss_pred hh---cC--CCCeEEEEECCcccccccccccEEEEeeeeecCCCccceEEEEEE
Confidence 32 34 47899999999999999999999999952 12 599997
No 9
>PRK09566 nirA ferredoxin-nitrite reductase; Reviewed
Probab=100.00 E-value=3.3e-91 Score=770.77 Aligned_cols=444 Identities=28% Similarity=0.472 Sum_probs=386.6
Q ss_pred CCCCChhhhhhhccCCCc-cchHHHhhhc-CCCCChhHHH-HhhhceeEee-ccCcccCCccceEEEEEEcCCccccHHH
Q 008202 68 ETKRSKVEIIKEQSNFIR-YPLNEELLTD-APNVNESATQ-LIKFHGSYQQ-YNRDERGAKSYSFMLRTKNPCGKVSNQL 143 (574)
Q Consensus 68 ~~k~~~~E~~K~~~~~l~-~~~~~~~~~~-~~~~~~~~~~-~~k~~G~y~Q-~~r~~r~~~~~~fmvRiripgG~lt~~q 143 (574)
.+|+||+|++|.+++||+ ...+++++.. .++++++|+. ++||+|+|.| ++. ++||||||+|+|.||++|
T Consensus 9 ~~~~n~~E~~K~~~~~~~~~~~i~~~a~~~~~~~~~~d~~~~~~~~G~~~~~~~~-------g~fmvRvrip~G~lt~~Q 81 (513)
T PRK09566 9 GKKLNKIEKNKAEKDGLAVKDELEKFAQIGWEAMDETDLELRLKWLGMFWRPVTP-------GKFMLRLRVPNGILTSEQ 81 (513)
T ss_pred cccCCHHHHhhcccCHHHHHHHHHHHHHhCcccCCHHHHhhhheeeEEeeEcCCC-------CeEEEEeccCCccCCHHH
Confidence 578999999999999996 3345566543 4678888876 8999999955 332 589999999999999999
Q ss_pred HHHHHHHHHHhC-CCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcceecCCCC-CCchhhhhHHHH
Q 008202 144 YLTMDDLADQFG-IGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAP-LVRKDYLFAQKT 220 (574)
Q Consensus 144 l~~la~iA~~yG-~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g-~t~~a~gd~~RNV~acp~~-~~~~~~~d~~~l 220 (574)
|+.|+++|++|| +|+++||||||||||||+.+++++++++| .+.| .+.++|||++|||++||.. .|+.++.|++++
T Consensus 82 lr~la~ia~~yg~~g~i~lTtRQniql~~i~~~dl~~i~~~L-~~~GL~~~~~~~d~vRnv~~~P~ag~~~~e~~D~~~l 160 (513)
T PRK09566 82 LRVLASIVQRYGDDGSADITTRQNLQLRGILLEDLPEILNRL-KAVGLTSVQSGMDNVRNITGSPVAGIDPDELIDTRPL 160 (513)
T ss_pred HHHHHHHHHHhCCCCeEEEEcccceeecCCcHHHHHHHHHHH-HHcCCCchhccCCCCCCccCCCCCCCCcchhhHHHHH
Confidence 999999999999 69999999999999999999999999999 7777 6678999999999999974 899999999999
Q ss_pred HHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccC
Q 008202 221 AENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTN 300 (574)
Q Consensus 221 a~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~ 300 (574)
+.+|.++|..+ ..++++ ..+|||||||+||||+++|+++.+|
T Consensus 161 a~~l~~~~~~~----------------------------------~~~~~~----~~~LPrKfki~vsGc~~~c~~~~i~ 202 (513)
T PRK09566 161 TQKLQDMLTNN----------------------------------GEGNPE----FSNLPRKFNIAIAGGRDNSVHAEIN 202 (513)
T ss_pred HHHHHHHhhcc----------------------------------cCCCCc----ccCCCCceEEEEECCCCCccccccc
Confidence 99999987531 001233 2579999999999999999999999
Q ss_pred CEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHH
Q 008202 301 DIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLI 379 (574)
Q Consensus 301 DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li 379 (574)
||||+++.++ |. .||+||+||++|..+ |+++..++ +|+++++++++++|+++|+++|+|+||+++||+++|
T Consensus 203 DiG~~~~~~~-~~-~gf~v~vGG~~g~~~------~~~~~~l~~~v~~e~v~~~~~av~~~f~~~g~r~~r~k~Rl~~lv 274 (513)
T PRK09566 203 DIAFVPAYKD-GV-LGFNVLVGGFFSSQR------CAYAIPLNAWVKPDEVVRLCRAILEVYRDNGLRANRQKGRLMWLI 274 (513)
T ss_pred ceEEEEEEEC-Ce-eEEEEEEecccCCCC------CcCceeeeeecCHHHHHHHHHHHHHHHHHhCCcccchhhhHHHHH
Confidence 9999998763 43 699999999998642 56788886 899999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHhCCCCCCCCC--CCcccccccCCeeeec-CCcEEEEEEeCCCCcCHHHHHHHHHHHHHhCC-eEE
Q 008202 380 SSWGIEKFRSVVEQYYGKKFEPFRQ--LPEWEFKSHLGWHEQG-DGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVR 455 (574)
Q Consensus 380 ~r~G~e~fr~~ve~~~g~~~~~~~~--~~~~~~~~~~G~~~q~-dG~~~v~v~vp~Grl~~~~l~~La~la~~yg~-~ir 455 (574)
++||+++|++++++++++++.+..+ ...|...+|+||++|+ +|+|++++++|+|+++++|++.||++|++||. +||
T Consensus 275 ~~~G~e~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~qk~~G~~~v~v~vp~G~lt~~~l~~la~ia~~yg~g~ir 354 (513)
T PRK09566 275 DEWGIEKFRAAVEAQFGPPLLTAAPGDEIDWEKRDHIGVHPQKQAGLNYVGLHVPVGRLYAEDMFELARLAEVYGSGEIR 354 (513)
T ss_pred HHhhHHHHHHHHHHHhCcccCCcccchhhccccccccceeecCcCCeEEEEEEcCCccCCHHHHHHHHHHHHHhCCCeEE
Confidence 9999999999999999987654332 2345667899999998 49999999999999999999999999999997 799
Q ss_pred EccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCC
Q 008202 456 ITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKY 535 (574)
Q Consensus 456 lT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~ 535 (574)
||++|||+|++|+++++++|.+++...++... .++.+++++||+|+++|+++++||+.++..|+++|++. .++
T Consensus 355 lT~~Qni~l~~i~~~~v~~l~~~~~~~~~~~~--~~~~~~~~vaC~G~~~C~~a~~dT~~~a~~l~~~l~~~---~~l-- 427 (513)
T PRK09566 355 LTVEQNVIIPNIPDENLETFLAEPLLQKFSLE--PGPLARGLVSCTGNQYCNFALIETKNRALALAKELDAE---LDL-- 427 (513)
T ss_pred EcCCCCEEEeCCCHHHHHHHHHHHhhccCCCC--CCccccCceeCcCcccccccHhhHHHHHHHHHHHHHHh---cCC--
Confidence 99999999999999999999998766666543 35677899999999999999999999999888888754 334
Q ss_pred CCceEEEEecCCCcCCCCCcccEEEEeec---C----CceEEEE
Q 008202 536 NESVVIRVTGCPNGCARPYMAELGLVGDG---P----NSYQVFQ 572 (574)
Q Consensus 536 ~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~---~----g~Y~l~l 572 (574)
|.+++||||||||+|++|+++||||+|.. + ..|+||+
T Consensus 428 p~~~kI~iSGCpn~C~~~~iaDIG~~G~~~~~dg~~~~g~~i~l 471 (513)
T PRK09566 428 PQPVRIHWTGCPNSCGQPQVADIGLMGTKARKNGKTVEGVDIYM 471 (513)
T ss_pred CCceEEEEECChhhhhchhhCCEEEEEEEeecCCcccceEEEEe
Confidence 47899999999999999999999999963 1 4699987
No 10
>TIGR02435 CobG precorrin-3B synthase. An iron-sulfur protein. An oxygen atom from dioxygen is incorporated into the macrocycle at C-20. In the aerobic cobalamin biosythesis pathway, four enzymes are involved in the conversion of precorrin-3A to precorrin-6A. The first of the four steps is carried out by EC 1.14.13.83, precorrin-3B synthase (CobG), yielding precorrin-3B as the product. This is followed by three methylation reactions, which introduce a methyl group at C-17 (CobJ; EC 2.1.1.131), C-11 (CobM; EC 2.1.1.133) and C-1 (CobF; EC 2.1.1.152) of the macrocycle, giving rise to precorrin-4, precorrin-5 and precorrin-6A, respectively.
Probab=100.00 E-value=1.2e-77 Score=642.68 Aligned_cols=365 Identities=21% Similarity=0.334 Sum_probs=316.9
Q ss_pred eEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcceecC
Q 008202 127 SFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAP 205 (574)
Q Consensus 127 ~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g-~t~~a~gd~~RNV~ac 205 (574)
.||+|||+|+|+||++||++|+++|++||+|+||||||||||||||+.+ ++++++.| .+.| ++.++|||.+|||++|
T Consensus 17 g~mvRvr~p~G~lt~~ql~~la~ia~~yg~g~i~lTtRQniql~gv~~~-~~~l~~~l-~~~GL~~~~~~g~~~Rnv~~c 94 (390)
T TIGR02435 17 GLLVRVRLPGGRLTPAQAIGLADLAERLGNGIIEVTARGNLQLRGLTAD-HDALSQAL-LAAGLGAAGAAADDIRNIEVS 94 (390)
T ss_pred eeEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEEEccccceecccCcc-HHHHHHHH-HHCCCCCccccCCcccccccC
Confidence 5899999999999999999999999999999999999999999999999 99999999 8888 4558999999999999
Q ss_pred CCC-CCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceE
Q 008202 206 PAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFK 284 (574)
Q Consensus 206 p~~-~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfk 284 (574)
|.+ .|..++.|+++++.+|.+.|... ++ ..+||+|||
T Consensus 95 p~~g~~~~~~~dt~~la~~l~~~l~~~--------------------------------------~~----~~~LPrKfk 132 (390)
T TIGR02435 95 PLAGIDPGEIADTRPLAAELRAALENE--------------------------------------RA----LLELPPKFS 132 (390)
T ss_pred ccccCCCccccchHHHHHHHHHHHhcC--------------------------------------hh----hhcCCCceE
Confidence 975 66788999999999999887421 11 247999999
Q ss_pred EEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccCCCChhHHHHHHHHHHHHHHHh
Q 008202 285 VAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQREN 364 (574)
Q Consensus 285 I~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~~v~~eev~~~~~ai~~~~rd~ 364 (574)
|+||||+++|+.+++|||||+++.++ +. .||+|++||+.+. +..+++|+++++++++++++++|+++
T Consensus 133 i~vsgc~~~c~~~~~~DIG~~~~~~~-~~-~gf~v~vGG~~~~-----------~~~~~~v~~~~v~~~v~av~~~~~~~ 199 (390)
T TIGR02435 133 VAIDGGGRLVLLGDTADVRLQALTTG-AG-VAWVVSLAGISTS-----------ARSLVTVAPDAAVPVAVALLRVFVEL 199 (390)
T ss_pred EEEECCCccccCCCCCCEEEEEEecC-CE-EEEEEEEecCCCC-----------CCceEEeCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998864 33 5999999996432 22347899999999999999999999
Q ss_pred CCCCcchhhhHHHHHHHhhhhHHHHHHHHHhCCCCCCC-----CCCCcccccccCCeeeecCCcEEEEEEeCCCCcCHHH
Q 008202 365 GRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPF-----RQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKM 439 (574)
Q Consensus 365 g~R~~R~~aRlk~li~r~G~e~fr~~ve~~~g~~~~~~-----~~~~~~~~~~~~G~~~q~dG~~~v~v~vp~Grl~~~~ 439 (574)
|+ ++|+||++++||+|+|++++++. .++.+. .+.+++...+++||++|+++.|++++++|+|+|++++
T Consensus 200 g~-----~aR~k~li~~~g~e~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~~~~~v~~~~p~G~i~~~~ 272 (390)
T TIGR02435 200 GG-----AARGRDLDDAFLFALALELVEDS--RPLIPDAAEGEAPRPAVDAAAPLGLHPQGDAGVTLGAGLALGQLTAAQ 272 (390)
T ss_pred Cc-----ccHHHHHHHHhHHHHHHHHHHhc--cccCCCccccccccCcccccCCCceeecCCCCeEEEEecCccccCHHH
Confidence 87 59999999999999999999983 232221 1112233457999999999779999999999999999
Q ss_pred HHHHHHHHHHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHH
Q 008202 440 KKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIP 518 (574)
Q Consensus 440 l~~La~la~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~ 518 (574)
++.|+++|++||. +||+|+||||+|++|++++++++.+.|.+.|+.... .++. .+++||+|+++|+++++||++++.
T Consensus 273 l~~la~ia~~~g~~~irlT~~Q~l~i~~i~~~~~~~~~~~l~~~gl~~~~-~~~~-~~v~aC~G~~~C~~~~~~t~~~a~ 350 (390)
T TIGR02435 273 LRGLAQLAQALGDGDLRLTPWRALLVLGLPPERADAAQRALAALGLVTSA-SDPR-ARIIACTGAPGCASALADTRADAE 350 (390)
T ss_pred HHHHHHHHHHhCCCeEEEcCCcceEEcCCCHHHHHHHHHHHHHCCCCcCC-CCCe-eeEEECCCccccccchhhHHHHHH
Confidence 9999999999997 799999999999999999999999999999998743 3454 558999999999999999999887
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeecCC
Q 008202 519 DILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPN 566 (574)
Q Consensus 519 ~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~~g 566 (574)
+|.+++... .+++||||||||+|++|+++||||+|..+|
T Consensus 351 ~l~~~~~~~---------~~~~i~vSGC~n~C~~~~~adiG~~G~~~g 389 (390)
T TIGR02435 351 ALAAYCEPT---------APITVHLSGCAKGCAHPGPAAITLVAAGAG 389 (390)
T ss_pred HHHHHhccc---------CCcEEEEeCCcccccCCCCCCEEEEecCCC
Confidence 766554221 139999999999999999999999998665
No 11
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=100.00 E-value=3.4e-43 Score=368.43 Aligned_cols=233 Identities=18% Similarity=0.312 Sum_probs=200.2
Q ss_pred HHHhhhce------eEeeccCcccCCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCH
Q 008202 104 TQLIKFHG------SYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDL 177 (574)
Q Consensus 104 ~~~~k~~G------~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l 177 (574)
+.+||||| ++.+.+++ .++||||+++|+ .+|++||+.|++||++||+|.+|||||||||||||+.+++
T Consensus 6 ~~~~~~~~~~~~gv~~~~~~~~-----~~~~mvRv~ip~-~lt~eqLr~LAdiaekyg~g~i~lTtrQnI~l~~I~~edl 79 (341)
T TIGR02066 6 YGKWKYHEVVKPGVIKHVAESG-----DVIYTVKAGTPR-LLSVDTLRKLCDIADKYSDGYLRWTIRNNVEFLVSDESKI 79 (341)
T ss_pred ccceEEcccCCCcEEEEECCCC-----CcEEEEEeCCCc-ccCHHHHHHHHHHHHHhCCCeEEEeccCCEEEecCCHHHH
Confidence 45799999 77775443 258999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCc-ceecCCCC-CCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhh
Q 008202 178 KTVMRSIIRSMGSTLGACGDLNR-NVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVK 255 (574)
Q Consensus 178 ~~i~~~L~~~~g~t~~a~gd~~R-NV~acp~~-~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~ 255 (574)
++++++| ++.|++.+++|+.+| ||++||+. .|+.+..|+.+++..|.+.|...
T Consensus 80 ~~i~~~L-~~~Gl~~~~~G~~vrrni~aC~G~~~C~~a~~dt~~l~~~l~~~l~~~------------------------ 134 (341)
T TIGR02066 80 QPLIDEL-EEVGFPVGGTGDAVKGNIVHTQGWLHCHIPAIDASGIVKAVMDELYEY------------------------ 134 (341)
T ss_pred HHHHHHH-HhccCCCCCCCCccccccccCcCCCCCCcchhchHHHHHHHHHHHHHH------------------------
Confidence 9999999 888988888999888 99999985 99999999999998887665310
Q ss_pred hccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEEEEec--------------------------
Q 008202 256 ARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSD-------------------------- 309 (574)
Q Consensus 256 ~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~-------------------------- 309 (574)
|....||+||||+|||||++|+.++++||||++...
T Consensus 135 ------------------~~~~~lP~KfKI~vSGC~~~C~~~~~~Dig~~g~~~~~p~~~~~~~~~~c~~~~Cv~~CP~~ 196 (341)
T TIGR02066 135 ------------------FTDHKLPAMVRISLSCCANMCGGVHASDIAIVGIHRKPPKINHEAVRNVCEIPSVVAACPTG 196 (341)
T ss_pred ------------------HhcccccccceeccccccccccchhhccccccccccCCcEEcHHHHHhhcCCCceEeeCchh
Confidence 112469999999999999999999999999998631
Q ss_pred ------CC-----------------------------CcceeEEEEEccCCCCcCCccccccccccccC-CCCh-----h
Q 008202 310 ------EN-----------------------------GEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPK-----E 348 (574)
Q Consensus 310 ------~~-----------------------------g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~-----e 348 (574)
++ ++..||.|++||++|++. ..|++|+.+. +++. +
T Consensus 197 Ai~~~~~~~~~~~~id~~~Ci~Cg~Ci~~CP~~a~~~~~~~G~~v~vGG~~g~~~----~~p~lg~~~~~~~~~~~~~~e 272 (341)
T TIGR02066 197 ALKPRRDGKNKSLEVDVEKCIYCGNCYTMCPAMPIFDPENDGAAIWVGGKLSNAR----VMPELSKVVVPWIPNNPPRWP 272 (341)
T ss_pred hceecccCCCCceeeccccCCcCCchHHhCchhhccCCCCCeEEEEEccccCccc----cCCcccceecccccCCCcchH
Confidence 10 223699999999987421 1389998885 7776 7
Q ss_pred HHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHhhhhHHHHHHHH
Q 008202 349 DILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQ 393 (574)
Q Consensus 349 ev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve~ 393 (574)
++++++++++++|+++|. ++|||+++|+|+|+++|++++..
T Consensus 273 ~~~~~i~~i~~~~~~~~~----~~eR~g~~i~RvG~~~f~~~v~~ 313 (341)
T TIGR02066 273 ELVAYVKKILEAWKANAK----KHERLIEWVERIGWERFFELVGL 313 (341)
T ss_pred HHHHHHHHHHHHHHHcCc----CCccHHHHHHHHhHHHHHHHHCC
Confidence 999999999999999987 36999999999999999999873
No 12
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=1.7e-39 Score=375.89 Aligned_cols=205 Identities=22% Similarity=0.338 Sum_probs=189.3
Q ss_pred ccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcCCCCCCCCCCCccee
Q 008202 124 KSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVL 203 (574)
Q Consensus 124 ~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g~t~~a~gd~~RNV~ 203 (574)
++++||+|+|+|+|++|++||++|+++|++||.|++|||+||||||+||+++++++++++| ...|++ .++|+.+|||+
T Consensus 550 k~g~~~v~~~~~~G~lt~~ql~~la~ia~~yg~~~i~iT~~Q~i~l~gi~~~~l~~i~~~L-~~~gl~-~~~g~~~r~v~ 627 (785)
T TIGR02374 550 KDGTYSVIPRMYGGRTNPEQLRTIANIAEAYSIPYVKITGGQRLDLFGAKKDDLPNIWKDL-KMPGYE-HAYGKALRTVK 627 (785)
T ss_pred cCCceEEEEecCCcccCHHHHHHHHHHHHHhCCCeEEEcCCceEEECCCCHHHHHHHHHHH-HhCCCC-CCCCCCccCcc
Confidence 4579999999999999999999999999999999999999999999999999999999999 788876 88999999999
Q ss_pred cCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCc
Q 008202 204 APPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRK 282 (574)
Q Consensus 204 acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrK 282 (574)
+||+ ++|..++.|+++++.+|.+.+. ...+|+|
T Consensus 628 aC~G~~~C~~g~~ds~~la~~l~~~~~----------------------------------------------~~~~p~k 661 (785)
T TIGR02374 628 TCVGSQWCRYGNQDSVQLAIQLERRYE----------------------------------------------GLRTPHK 661 (785)
T ss_pred cCCCccccCcchhhHHHHHHHHHHHhc----------------------------------------------ccCCCCc
Confidence 9998 4999999999999999977642 1458999
Q ss_pred eEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHHHHHHHHHH
Q 008202 283 FKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQ 361 (574)
Q Consensus 283 fkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~~~ai~~~~ 361 (574)
|||+|||||++|+.++++||||++.. .||+|||||+.|+. |++|+.+. ++++|++++++++++++|
T Consensus 662 ~ki~vSGC~~~C~~~~~~DiG~i~~~------~g~~v~vGG~~g~~-------~~~a~~l~~~~~~e~v~~~i~~~l~~y 728 (785)
T TIGR02374 662 IKIGVSGCERECAEAAGKDVGVIATE------KGWNLYVGGNGGTH-------PRHGDLLAVDEDEETLIGYIDRFLQYY 728 (785)
T ss_pred eEEEEECCccccchhhhCcEEEEEec------CCeEEEECCcCCCC-------CcceeeecCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999864 37999999998865 89999997 689999999999999999
Q ss_pred HHhCCCCcchhhhHHHHHHHhhhhHHHHHHHH
Q 008202 362 RENGRRDDRKYSRMKYLISSWGIEKFRSVVEQ 393 (574)
Q Consensus 362 rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve~ 393 (574)
++++++ .+|+++|++|||+++|++.+++
T Consensus 729 ~~~~~~----~er~~~~i~r~G~~~~~~~~~~ 756 (785)
T TIGR02374 729 RETADY----LERTAPWLERLGIDHVREVLFE 756 (785)
T ss_pred HHhCcc----cchHHHHHHHhChHHHHHHHHh
Confidence 999885 6899999999999999999985
No 13
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=100.00 E-value=4.7e-39 Score=325.14 Aligned_cols=225 Identities=25% Similarity=0.420 Sum_probs=201.0
Q ss_pred hceeEeeccCcccCCccceEEEEEEcCC-ccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHH
Q 008202 109 FHGSYQQYNRDERGAKSYSFMLRTKNPC-GKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRS 187 (574)
Q Consensus 109 ~~G~y~Q~~r~~r~~~~~~fmvRiripg-G~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~ 187 (574)
..|+..+.+. +|++||++|. |.+++++|++|++||++||+|.|+||+||+++|++|+.++++++.++| ++
T Consensus 19 ~~Gvi~r~~~--------t~~vRv~~ppgg~l~~e~Lr~i~diAekyG~G~i~iT~rqg~ei~~i~~e~~~~v~~~L-~~ 89 (317)
T COG2221 19 GYGVIKRRDG--------TYTVRVRTPPGGFLSAETLRKIADIAEKYGDGLIHITSRQGLEIPGISPEDADDVVEEL-RE 89 (317)
T ss_pred CCceeeeccC--------cEEEEEecCCCCccCHHHHHHHHHHHHHhCCCeEEEEecCceEeccCCHHHHHHHHHHH-HH
Confidence 4578877653 6999999998 899999999999999999999999999999999999999999999999 89
Q ss_pred cCCCCCCCCCCCcceecCCCC-CCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCC
Q 008202 188 MGSTLGACGDLNRNVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNF 266 (574)
Q Consensus 188 ~g~t~~a~gd~~RNV~acp~~-~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~ 266 (574)
+|+..++.|+.+|||++|+++ .|..++.|+.+++++|.+.|.
T Consensus 90 iG~~~G~~G~~vr~i~aC~G~~~C~~a~~Dt~~la~~l~e~f~------------------------------------- 132 (317)
T COG2221 90 IGLPVGSTGPAVRAIVACPGPRTCETALYDTTELARRLEEEFL------------------------------------- 132 (317)
T ss_pred cCCCCCCcchhhhhhhcCcCcccccccccChHHHHHHHHHHhh-------------------------------------
Confidence 999999999999999999997 899999999999999987753
Q ss_pred CCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEEEEecC------------------------------------
Q 008202 267 PDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDE------------------------------------ 310 (574)
Q Consensus 267 ~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~~------------------------------------ 310 (574)
...+|.||||++|||||+|+.+..+||||+++.+.
T Consensus 133 ---------~~~~P~KfKI~vsGCPn~C~r~~~~DigivGv~~P~~~~E~c~gc~~cv~~C~~gAI~~~~~~l~id~~~C 203 (317)
T COG2221 133 ---------EVPVPYKFKIAVSGCPNDCTRPQAHDIGIVGVWKPKVDEELCRGCGKCVKVCPTGAITWDGKKLKIDGSKC 203 (317)
T ss_pred ---------cCCCCceEEEEeecCCcccccccccceeEEEeecCccCHHHhchhHhHHHhCCCCceeeccceEEEehhhc
Confidence 13589999999999999999999999999998751
Q ss_pred ---------------CCcceeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHHHHHHHHHHHHhCCCCcchhhh
Q 008202 311 ---------------NGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYSR 374 (574)
Q Consensus 311 ---------------~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~~~ai~~~~rd~g~R~~R~~aR 374 (574)
.++-.|+.|+|||.+|+. .|+.+.++- +.++|++++++++++++|+++++.. ++|
T Consensus 204 i~Cg~Ci~~Cp~~~~~~ek~g~~i~VGGk~Gr~------~~r~g~~~~~~~~~dei~~ii~~~~e~~~~~~~~~---~~R 274 (317)
T COG2221 204 IGCGKCIRACPKAAFRGEKVGIAILVGGKTGRE------LGRVGKPLVPVEDEDEIIDIIKKTIEVWREYAEKP---GER 274 (317)
T ss_pred cCccHHhhhCChhhcchhhccEEEEEccccCCc------cccccccccccCCHHHHHHHHHHHHHHHHHhcccc---cch
Confidence 234469999999999875 358888885 5699999999999999999999842 459
Q ss_pred HHHHHHHhhhhHHHHHHHHHhCC
Q 008202 375 MKYLISSWGIEKFRSVVEQYYGK 397 (574)
Q Consensus 375 lk~li~r~G~e~fr~~ve~~~g~ 397 (574)
|.++|+|.|+++|++++...+..
T Consensus 275 igd~I~r~G~~kF~e~i~~~~~~ 297 (317)
T COG2221 275 IGDFIDRVGFEKFLEEILREVKQ 297 (317)
T ss_pred HHHHHHHHhHHHHHHHHHHhhcc
Confidence 99999999999999999875543
No 14
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=100.00 E-value=7.5e-39 Score=334.02 Aligned_cols=230 Identities=19% Similarity=0.293 Sum_probs=198.4
Q ss_pred HHHHhhhceeEeeccCcccCCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHH
Q 008202 103 ATQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMR 182 (574)
Q Consensus 103 ~~~~~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~ 182 (574)
+...+|-.|++.|++++ +||+|+|+|+|++|++|++.|+++|++||+|++|||||||||||||+.++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~g-------~~~vrv~~p~G~lt~~qlr~la~ia~~yg~g~~~~TtrQ~i~l~~i~~~~~~~v~~ 75 (314)
T TIGR02912 3 NTKALKKNAFRVTKVRG-------KTAIRVRVPGGILPAKYLSVLQNIAETYGNGKVHITTRQGFEIPGIRFEDIDEVNK 75 (314)
T ss_pred cHHHHhhCCeEEeecCC-------ceEEEEEccceecCHHHHHHHHHHHHHhCCCeEEEecccceEecCcCHHHHHHHHH
Confidence 35678889999999874 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc----C-----CCCCCCCCCCcceecCCCC-CCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChh
Q 008202 183 SIIRSM----G-----STLGACGDLNRNVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPE 252 (574)
Q Consensus 183 ~L~~~~----g-----~t~~a~gd~~RNV~acp~~-~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~ 252 (574)
.| ++. + ...+.+|+.+|||++||+. .|..++.|+++++.+|.+.+.
T Consensus 76 ~L-~~~~~gl~~~~~~~~~G~~g~~vR~i~aC~g~~~C~~~~~dt~~l~~~l~~~~~----------------------- 131 (314)
T TIGR02912 76 AL-QPIIEGLEINQEDVQKGYSASGTRNITACIGNRVCPFANYDTTKFAKRIEKAVF----------------------- 131 (314)
T ss_pred HH-HHHhhcccccccccccccccCCccceeeCCCCCCCCCCcccHHHHHHHHHHHhh-----------------------
Confidence 99 542 2 3346688999999999984 999999999999999976542
Q ss_pred hhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEEEEecC----------------------
Q 008202 253 VVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDE---------------------- 310 (574)
Q Consensus 253 ~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~~---------------------- 310 (574)
.+|+||||+|||||++|..+.++||||++....
T Consensus 132 -------------------------~~~~k~ki~iSGCp~~C~~~~~~DiG~~g~~~~~~d~~~C~~Cg~C~~~Cp~~a~ 186 (314)
T TIGR02912 132 -------------------------PNDYHVKIALTGCPNDCAKARMHDFGIIGMTEPQYDADRCIGCGACVKVCKKKAV 186 (314)
T ss_pred -------------------------cCCceEEEEEeCCCchhhHHHHhhcccccccCCceeCccCCcchHHHHhcChhhc
Confidence 257899999999999999999999999875210
Q ss_pred ---------------------------------CCcceeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHHHHH
Q 008202 311 ---------------------------------NGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKA 356 (574)
Q Consensus 311 ---------------------------------~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~~~a 356 (574)
.+...+|.+++||..|+.+ |+++..+. +++.+++++++++
T Consensus 187 ~ai~~~~~~~~id~~~C~~Cg~Cv~~CP~~Al~~~~~~~~~v~~gg~~g~~~------p~~~~~~~~~~~~~~v~~~~~~ 260 (314)
T TIGR02912 187 GALSFENYKVVRDHSKCIGCGECVLKCPTGAWTRSEEKYYKLRLMGRTGKKN------PRLGEDFIKWVDEDSIVKIILN 260 (314)
T ss_pred CceeccCCeEEeCCCcCcCcchhhhhCCHhhcccCcCCcEEEEEcCccCCCC------cchhhhhhhhcCcchhHHHHHH
Confidence 0112369999999988642 88888774 7999999999999
Q ss_pred HHHHHHHhCCCCc-chhhhHHHHHHHhhhhHHHHHHHHH
Q 008202 357 IVVTQRENGRRDD-RKYSRMKYLISSWGIEKFRSVVEQY 394 (574)
Q Consensus 357 i~~~~rd~g~R~~-R~~aRlk~li~r~G~e~fr~~ve~~ 394 (574)
++++|++|+++.+ |++|||+++|+|||+++|++++.+.
T Consensus 261 ~~~~~~~~~~~~~~~~~eR~~~~i~r~g~~~~~~~~~~~ 299 (314)
T TIGR02912 261 TYDYITEYIDKNAPGGKEHIGYIVDRTGYQEFKKWALKD 299 (314)
T ss_pred HHHHHHHHHhccCCCccchHHHHHHHhhHHHHHHHHhhh
Confidence 9999999987765 5789999999999999999988543
No 15
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=100.00 E-value=2.8e-38 Score=336.48 Aligned_cols=271 Identities=18% Similarity=0.255 Sum_probs=217.2
Q ss_pred CCCChhhhhhhccCCCc------------cchHHHhhhcCCCCChhHHHHhh-hceeEeecc--CcccCCccceEEEEEE
Q 008202 69 TKRSKVEIIKEQSNFIR------------YPLNEELLTDAPNVNESATQLIK-FHGSYQQYN--RDERGAKSYSFMLRTK 133 (574)
Q Consensus 69 ~k~~~~E~~K~~~~~l~------------~~~~~~~~~~~~~~~~~~~~~~k-~~G~y~Q~~--r~~r~~~~~~fmvRir 133 (574)
+=+|.|-.||+...+.. +.+-..+.+..+++...-+.-+- .-|+|-|.- .+.=++..+.|||||+
T Consensus 8 pwps~v~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wkgg~v~v~gyg~GVigr~~~~~~~~p~~~~~~tvRv~ 87 (402)
T TIGR02064 8 PWPSFVSEIKKTAAYRADYQVPVDPEDLLGVLELSYDERKTHWKGGIVSVFGYGGGVIGRYSDQGEKFPGVAEFHTVRVA 87 (402)
T ss_pred CCchHHHHHHHhccccccccccchhHHHHHHHhhhhhcCcccccCceEeeeecCCEEEEEecCCcccCCCcCeEEEEEEe
Confidence 34677777777765433 11112223445677744444444 367888832 2322345579999999
Q ss_pred cCCcc-ccHHHHHHHHHHHHHhCCCeEEcCC-CCcEEEcCCCcCCHHHHHHHHHHHcCCCCCCCCCCCcceecCCCC-CC
Q 008202 134 NPCGK-VSNQLYLTMDDLADQFGIGTLRLTT-RQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAP-LV 210 (574)
Q Consensus 134 ipgG~-lt~~ql~~la~iA~~yG~g~i~lTt-RQniqL~gI~~~~l~~i~~~L~~~~g~t~~a~gd~~RNV~acp~~-~~ 210 (574)
+|+|. +|++||+.|++||++||.|.+++|+ ||||+|+||+.+++++++++| .+.|++++++|+.+||+++|+++ .|
T Consensus 88 ~P~G~~~tteqLR~LaDiaekYGsG~~~~tgstqdIiL~gv~~e~le~i~~eL-~~~G~dlggsG~~vRti~aC~G~~~C 166 (402)
T TIGR02064 88 QPSGKFYSTDYLRQLCDVWEKYGSGLTNFHGQTGDIVFLGTQTPQLQEIFEEL-TNLGTDLGGSGSNLRTPESCVGPARC 166 (402)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCCCEEEEeccccCEEEcCCCHHHHHHHHHHH-hhcccCCCCCCCCccceecCCCcccC
Confidence 99998 6999999999999999999999985 899999999999999999999 78898889999999999999985 99
Q ss_pred chhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcC
Q 008202 211 RKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVP 290 (574)
Q Consensus 211 ~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc 290 (574)
..+..|+++++.+|.+.|... +....||+||||+||||
T Consensus 167 ~~a~~DT~~l~~~L~~~~~~~------------------------------------------~~~~~lP~KfKI~vSGC 204 (402)
T TIGR02064 167 EFACYDTLKACYELTMEYQDE------------------------------------------LHRPAFPYKFKFKFSGC 204 (402)
T ss_pred CCcccccHHHHHHHHHHHHhh------------------------------------------hhhccCCcccccccccc
Confidence 999999999999998876420 01235899999999999
Q ss_pred CCCCcccc-cCCEEEEEEecC-------------------------------------C---------------------
Q 008202 291 TDNSVDIL-TNDIGVVVVSDE-------------------------------------N--------------------- 311 (574)
Q Consensus 291 ~~~c~~~~-~~DIG~va~~~~-------------------------------------~--------------------- 311 (574)
||+|+.+. ++||||++.+.+ +
T Consensus 205 pn~C~~~~~~~DIG~iG~~r~~~~id~~~~~~~~~~cg~~~~~~~~v~~Cp~~ai~~~~~~~~~id~~~C~~Cm~Ci~~~ 284 (402)
T TIGR02064 205 PNDCVAAIARSDFAVIGTWKDDIKVDQEAVKAYIAGWGKFDIENEVVNRCPTKAISWDGSKELSIDNRECVRCMHCINKM 284 (402)
T ss_pred ccccccceeccCceeeccccCCccccHHHHHHHHhhccccccchhHhhcCCccccccCCCceEEEcchhcCcCccccccC
Confidence 99999999 999999986431 0
Q ss_pred ------CcceeEEEEEccCCCCcCCccccccccccccC-CC----ChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHH
Q 008202 312 ------GEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YV----PKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLIS 380 (574)
Q Consensus 312 ------g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v----~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~ 380 (574)
|...||.|++||+.|.. ..|++++.+. |+ +.+++.+++++|+++|+++|. ++|||+++|+
T Consensus 285 p~a~~~g~~~G~~ilvGGk~~~~-----~g~~lg~~~~~f~~~e~~~eei~~~i~~i~~~~~e~g~----~~ER~g~~i~ 355 (402)
T TIGR02064 285 PKALHPGDERGVTILIGGKAPIL-----DGAQMGWVVVPFVEAEEPYDEIKELVEKIIDWWDEEGK----NRERIGETIK 355 (402)
T ss_pred cccccCCCCCeEEEEEccCCCCC-----CCCcccceecccccCCCCHHHHHHHHHHHHHHHHHhCC----ccccHHHHHH
Confidence 12468999999998632 1289998885 77 568999999999999999986 5899999999
Q ss_pred HhhhhHHHHHH
Q 008202 381 SWGIEKFRSVV 391 (574)
Q Consensus 381 r~G~e~fr~~v 391 (574)
|+|+++|++++
T Consensus 356 R~G~~~f~~~i 366 (402)
T TIGR02064 356 RLGLQKFLEVI 366 (402)
T ss_pred HhCHHHHHHHH
Confidence 99999999887
No 16
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=3.9e-38 Score=365.23 Aligned_cols=205 Identities=19% Similarity=0.284 Sum_probs=186.9
Q ss_pred ccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcce
Q 008202 124 KSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNV 202 (574)
Q Consensus 124 ~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g-~t~~a~gd~~RNV 202 (574)
++++||||+|+|+|++|++||+.|+++|++|| +++|||+||||||+||+++++++++++| .+.| .+.+++|+.+|||
T Consensus 561 k~g~~~v~~~~p~G~lt~~ql~~ia~iA~kyg-~~~~iT~~Q~i~L~~i~~~~l~~v~~~L-~~~Gl~~~~~~g~~vr~v 638 (847)
T PRK14989 561 KDGTYSVIPRSAGGEITPEGLMAVGRIAREFN-LYTKITGSQRIGLFGAQKDDLPEIWRQL-IEAGFETGHAYAKALRMA 638 (847)
T ss_pred cCCeEEEEEEcCCcEeCHHHHHHHHHHHHHHC-CcEEEcCCCceEeCCCCHHHHHHHHHHH-HHCCCCcCCCCCCCcCce
Confidence 56899999999999999999999999999999 4799999999999999999999999999 8888 4445668999999
Q ss_pred ecCCCC-CCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCC
Q 008202 203 LAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPR 281 (574)
Q Consensus 203 ~acp~~-~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPr 281 (574)
++||+. +|+.++.|++++|.+|.+++. ...+|+
T Consensus 639 ~aC~G~~~C~~g~~dt~~la~~l~~~~~----------------------------------------------~~~~P~ 672 (847)
T PRK14989 639 KTCVGSTWCRYGVGDSVGLGVELENRYK----------------------------------------------GIRTPH 672 (847)
T ss_pred eeCCCCCccccccccHHHHHHHHHHHhc----------------------------------------------cCCCCC
Confidence 999984 999999999999999877642 145899
Q ss_pred ceEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHHHHHHHHH
Q 008202 282 KFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVT 360 (574)
Q Consensus 282 KfkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~~~ai~~~ 360 (574)
||||+|||||++|+++.++||||++.. .||+||+||+.|++ |++++.+. +++++++++++++++++
T Consensus 673 k~ki~vSGC~~~C~~~~i~DiG~i~~~------~G~~v~vGG~~G~~-------~~~g~~l~~~~~~~~v~~~i~~~l~~ 739 (847)
T PRK14989 673 KMKFGVSGCTRECAEAQGKDVGIIATE------KGWNLYVCGNGGMK-------PRHADLLAADLDRETLIKYLDRFMMF 739 (847)
T ss_pred ceEEEEeCCcccccccccccEEEEEec------CceEEEECCCCCCC-------CcceeeecCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999864 37999999999876 89999886 79999999999999999
Q ss_pred HHHhCCCCcchhhhHHHHHHHh--hhhHHHHHHHH
Q 008202 361 QRENGRRDDRKYSRMKYLISSW--GIEKFRSVVEQ 393 (574)
Q Consensus 361 ~rd~g~R~~R~~aRlk~li~r~--G~e~fr~~ve~ 393 (574)
|++++++ ++|+..|++|+ |++.|++.+.+
T Consensus 740 y~~~~~~----~er~~~~~~r~~~g~~~~~~~~~~ 770 (847)
T PRK14989 740 YIRTADK----LQRTAVWLENLEGGIDYLKAVIID 770 (847)
T ss_pred HHHhCcc----cccHHHHHHHhhchHHHHHHHHhc
Confidence 9999884 78999999999 99999988764
No 17
>PRK09567 nirA ferredoxin-nitrite reductase; Reviewed
Probab=100.00 E-value=1.6e-37 Score=347.78 Aligned_cols=225 Identities=20% Similarity=0.268 Sum_probs=196.2
Q ss_pred HHhhhceeEeeccCcccCCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHH
Q 008202 105 QLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSI 184 (574)
Q Consensus 105 ~~~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L 184 (574)
..+++.|+|.|++. +.||||+++|+|+||++|++.|++||++||+|.||||+||||||+||+.++++++++.|
T Consensus 359 ~~~~~~Gv~~Qkq~-------G~~~v~v~vp~Grlt~~ql~~LA~iA~~yg~g~irlT~~Qni~l~~V~~~~~~~l~~~L 431 (593)
T PRK09567 359 DRFAHVGVHPQKQP-------GLNWIGVVLPVGRLTTDQMRGLAKIAARYGDGEIRLTVWQNLLISGVPDADVAAVEAAI 431 (593)
T ss_pred hccccceeeccCCC-------CceEEEEECCCCccCHHHHHHHHHHHHHhCCCEEEEeCCCCeEEcCCCHHHHHHHHHHH
Confidence 45678899999863 58999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCCCCcceecCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCC
Q 008202 185 IRSMGSTLGACGDLNRNVLAPPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHG 263 (574)
Q Consensus 185 ~~~~g~t~~a~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~ 263 (574)
.+.|++.... ...+++++|++ ++|+.++.++++++.+|.++|.+.
T Consensus 432 -~~~Gl~~~~~-~~r~~~vAC~G~~~C~~a~~dT~~~a~~l~~~l~~~-------------------------------- 477 (593)
T PRK09567 432 -EALGLTTEAS-SIRAGLVACTGNAGCKFAAADTKGHALAIADYCEPR-------------------------------- 477 (593)
T ss_pred -HHcCCCCCCc-ceeeccEecCCCCCCCccHhhHHHHHHHHHHHHHHh--------------------------------
Confidence 8888665433 34456999997 699999999999999999887421
Q ss_pred CCCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEEEEec---CCCcceeEEEEEccCCCCcCCcccccccccc
Q 008202 264 TNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSD---ENGEPQGFNLYVGGGMGRTHRLETTFPRLGE 340 (574)
Q Consensus 264 ~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~---~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~ 340 (574)
..||+||||+|||||++|++++++||||++... ++....||+||+||++|.. |++++
T Consensus 478 -------------~~l~~~ikI~vSGCpn~Ca~~~iaDIGfvG~~~~~~~g~~~~gy~v~lGG~~g~~-------~~lg~ 537 (593)
T PRK09567 478 -------------VALDQPVNIHLTGCHHSCAQHYIGDIGLIGAKVAVSEGDTVEGYHIVVGGGFGED-------AAIGR 537 (593)
T ss_pred -------------cCCCCCcEEEEECCCccccccccCCEEEEeeEeccCCCCccceEEEEECCCCCCC-------CCcch
Confidence 148999999999999999999999999999753 2223579999999999865 78888
Q ss_pred ccC-CCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHhhhhHHHHHHHH
Q 008202 341 QLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQ 393 (574)
Q Consensus 341 ~l~-~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve~ 393 (574)
.+. +|+++++++++++++..|+++..+ ..|+|.+|++|+|+++|++.++.
T Consensus 538 ~~~~~vp~eev~~~l~~ll~~y~~~r~~---~~E~f~~f~~R~g~e~l~~~l~~ 588 (593)
T PRK09567 538 EVFRDVKAEDAPRLVERLLRAYLAHRQG---PDETFQAFTRRHDPEALRSLAEE 588 (593)
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHhcCC---CCCcHHHHHHHcCcHHHHHHHhc
Confidence 875 899999999999999999998541 26899999999999999999875
No 18
>PLN02431 ferredoxin--nitrite reductase
Probab=100.00 E-value=2.7e-34 Score=320.11 Aligned_cols=198 Identities=21% Similarity=0.292 Sum_probs=172.0
Q ss_pred HHhhhceeEeeccCcccCCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHH
Q 008202 105 QLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSI 184 (574)
Q Consensus 105 ~~~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L 184 (574)
...++.|+|.|++. ++||||+++|+|+||++||+.|++||++||+|+||||+||||||+||+.+++++++++|
T Consensus 380 ~~~~~~Gv~~Qk~~-------G~~~v~v~vp~Grlt~~qL~~LA~lA~~yG~g~irlT~~Qni~i~~V~~~~v~~l~~~l 452 (587)
T PLN02431 380 ERRDYLGVHPQKQE-------GLSYVGLHVPVGRLQAADMDELARLADEYGSGELRLTVEQNIIIPNVPNSKVEALLAEP 452 (587)
T ss_pred cccceeEEEeeccC-------CeEEEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEcCCCCEEECCCCHHHHHHHHHHH
Confidence 34578999999753 58999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHcCCCCCCCCCCCcceecCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCC
Q 008202 185 IRSMGSTLGACGDLNRNVLAPPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHG 263 (574)
Q Consensus 185 ~~~~g~t~~a~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~ 263 (574)
...++.. .+++.+|||++|++ ++|..++.+|+++|.+|.+.|..
T Consensus 453 -~~~g~~~-~~~~~~r~vvACtG~~~C~~ai~eTk~~A~~L~~~l~~--------------------------------- 497 (587)
T PLN02431 453 -LLQRFSP-NPGLLLKGLVACTGNQFCGQAIIETKARALKVTEELER--------------------------------- 497 (587)
T ss_pred -HhcCCCC-CCCCCccceeECCCccccCccHHHHHHHHHHHHHHHHH---------------------------------
Confidence 5566554 35789999999997 69999999999999999887631
Q ss_pred CCCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEEEEe--cCCCc-ceeEEEEEccCCCCcCCcccccccccc
Q 008202 264 TNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVS--DENGE-PQGFNLYVGGGMGRTHRLETTFPRLGE 340 (574)
Q Consensus 264 ~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~--~~~g~-~~Gf~v~vGGg~G~~~~~~~t~p~la~ 340 (574)
...||+||||+|||||++|+++.++||||++.. +++|+ +.||+||+||++|.. |++|+
T Consensus 498 ------------~~~lp~k~kI~vSGCpn~C~~~~iaDIG~vG~~~~~~~g~~v~gf~V~lGG~~G~~-------~~~g~ 558 (587)
T PLN02431 498 ------------LVEVPRPVRMHWTGCPNSCGQVQVADIGFMGCMARDENGKAVEGADIFVGGRVGSD-------SHLAE 558 (587)
T ss_pred ------------hhcCCCCeEEEEECCcccccccccccEEEEeeeeecCCCccceEEEEEECCcCCCC-------Cccch
Confidence 135899999999999999999999999999864 22243 469999999999865 78999
Q ss_pred ccC-CCChhHHHHHHHHHHHHHHH
Q 008202 341 QLG-YVPKEDILYAVKAIVVTQRE 363 (574)
Q Consensus 341 ~l~-~v~~eev~~~~~ai~~~~rd 363 (574)
.+. +|+++|+++++++|+..|..
T Consensus 559 ~l~~~Vp~eel~~~v~~il~~~~~ 582 (587)
T PLN02431 559 EYKKGVPCDELVPVVADILIEEFG 582 (587)
T ss_pred hhhcCCCHHHHHHHHHHHHHHHhh
Confidence 886 89999999999997655543
No 19
>PLN00178 sulfite reductase
Probab=100.00 E-value=3.9e-34 Score=320.81 Aligned_cols=224 Identities=17% Similarity=0.271 Sum_probs=191.1
Q ss_pred hhhceeEeeccCcccCCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHH
Q 008202 107 IKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIR 186 (574)
Q Consensus 107 ~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~ 186 (574)
-.+.|++.|+| +.|++++++|+|+|+++|++.|++||++||. .+|||++|||+|+||+.++++++.+.| +
T Consensus 393 ~d~~G~~~q~d--------G~~~v~l~vp~Grit~~~l~~La~iAe~yg~-~iRlT~~Qnlil~~I~~~~~~~i~~~L-~ 462 (623)
T PLN00178 393 KSYLGWHEQGD--------GKLFYGVHVDNGRIKGEAKKALREVIEKYNL-PVRLTPNQNLILCDIRPAWKEPITAAL-A 462 (623)
T ss_pred ccceeEEEccC--------CcEEEEEecCCeecCHHHHHHHHHHHHHhCC-cEEEeCCCCEEEcCCCHHHHHHHHHHH-H
Confidence 35779999875 4689999999999999999999999999995 899999999999999999999999999 8
Q ss_pred HcCCCC-CCCCCCCcceecCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCC
Q 008202 187 SMGSTL-GACGDLNRNVLAPPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGT 264 (574)
Q Consensus 187 ~~g~t~-~a~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~ 264 (574)
+.|+.. ...+...|++|+||+ ++|+.++.+++.++..|.+.+... ++
T Consensus 463 ~~Gl~~~~~~~~~~r~~vAC~G~~~C~lA~~et~~~a~~l~~~l~~~--------~~----------------------- 511 (623)
T PLN00178 463 AAGLLEPEEVDPLNRTAMACPALPLCPLAITEAERGIPDILKRVRAM--------FN----------------------- 511 (623)
T ss_pred hCCCCCCCCCCcceeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHH--------Hh-----------------------
Confidence 888543 345778999999998 699999999999998887765310 00
Q ss_pred CCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC-
Q 008202 265 NFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG- 343 (574)
Q Consensus 265 ~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~- 343 (574)
+ ++ ..+|+||||+||||||+|++++++||||++.. ..+|+||+||+.+. +++++.+.
T Consensus 512 ------~--~~-l~~~~~i~I~vSGCpNgCarp~iaDIGlvG~~-----~~~Y~I~lGG~~~~--------~~la~~~~~ 569 (623)
T PLN00178 512 ------K--VG-LKYDESVVVRMTGCPNGCARPYMAELGFVGDG-----PNSYQIWLGGTPNQ--------TRLAEPFMD 569 (623)
T ss_pred ------h--cC-CCCCCceEEEEeCCCccccccccCcEEEEcCC-----CCeEEEEECCCCCc--------ccccchhhc
Confidence 0 11 22469999999999999999999999999832 24899999997432 67888886
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHhhhhHHHHHHHHHhCC
Q 008202 344 YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGK 397 (574)
Q Consensus 344 ~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve~~~g~ 397 (574)
.|+++++++++++++..|++++. .+|||.+|++|+|+++|++.++.++|.
T Consensus 570 ~V~~eei~~~le~ll~~y~~~r~----~~E~f~df~~R~G~e~~~~~~~~~~~~ 619 (623)
T PLN00178 570 KVKVDDLEKVLEPLFYMWKQQRQ----EKESFGDFTNRVGFEALKEYIESYAGS 619 (623)
T ss_pred CcCHHHHHHHHHHHHHHHHHhCc----CCCCHHHHHHHcCcHHHHHHHHHhcCC
Confidence 79999999999999999998765 579999999999999999999998753
No 20
>TIGR02042 sir ferredoxin-sulfite reductase. monomeric enzyme that also catalyzes the reduction of sulfite to sulfide.
Probab=100.00 E-value=2.3e-34 Score=321.06 Aligned_cols=219 Identities=17% Similarity=0.272 Sum_probs=183.6
Q ss_pred hhhceeEeeccCcccCCccceEEEEEEcCCccccHH---HH-HHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHH
Q 008202 107 IKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQ---LY-LTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMR 182 (574)
Q Consensus 107 ~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~---ql-~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~ 182 (574)
-.+.|+++|.+ +.||+++++|+|+|+++ |+ +.|++||++||. .+|||+||||+|+||+.++++++.+
T Consensus 351 ~d~~G~~~q~d--------G~~~v~l~vp~Grl~~~~~~~l~~~LaeIA~~yg~-~irlT~~Qnl~l~~V~~~~~~~i~~ 421 (577)
T TIGR02042 351 KDYLGWHEQGD--------GKWFLGLHIDSGRVKDDGNWQLKKALREIVEKYNL-PVRLTPNQNIILYDIQPEWKRAITT 421 (577)
T ss_pred cccceEEECCC--------ceEEEEEEecCceecCCchHHHHHHHHHHHHHhCC-CEEEcCCCCeEECCCCHHHHHHHHH
Confidence 35779998864 48999999999999995 44 799999999996 7999999999999999999999999
Q ss_pred HHHHHcCC-CCCCCCCCCcceecCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCC
Q 008202 183 SIIRSMGS-TLGACGDLNRNVLAPPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDN 260 (574)
Q Consensus 183 ~L~~~~g~-t~~a~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~ 260 (574)
.| ++.|+ +.+++++..||+++||+ ++|+.++.+++..+..+.+.+..
T Consensus 422 ~L-~~~Gl~~~~~~~~~~~~~~aC~G~~~C~lal~et~~~~~~l~~~l~~------------------------------ 470 (577)
T TIGR02042 422 VL-AQRGVLQPEAIDPLNRYAMACPALPTCGLAITESERAIPGILKRIRA------------------------------ 470 (577)
T ss_pred HH-HhcCCCCCCCCCccceeeEeCCCcccccCchHHHHHHHHHHHHHHHH------------------------------
Confidence 99 88884 44568899999999997 69999999998644433332210
Q ss_pred CCCCCCCCCCCCcccCCCC-CCceEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccc
Q 008202 261 SHGTNFPDSPEPIYGTQFL-PRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLG 339 (574)
Q Consensus 261 ~~~~~~~~~~e~~yg~~~L-PrKfkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la 339 (574)
++....| |+||||+|||||++|++++++||||++... .||+||+||+.+. ++++
T Consensus 471 ------------l~~~~~l~~~~i~I~vSGCpn~Ca~p~iaDIG~vG~~~-----~~y~l~lGG~~~~--------~rla 525 (577)
T TIGR02042 471 ------------LLEKVGLPDEHFVVRMTGCPNGCARPYMAELGFVGSAP-----NSYQVWLGGSPNQ--------TRLA 525 (577)
T ss_pred ------------HHHhcCCCCCCcEEEEECCCccccCCCcCcEEEECCCC-----CcEEEEECCCCCc--------ccch
Confidence 0001235 599999999999999999999999997532 4799999998752 5788
Q ss_pred cccC-CCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHhhhhHHHHHHHHH
Q 008202 340 EQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQY 394 (574)
Q Consensus 340 ~~l~-~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve~~ 394 (574)
+.+. +|+++++++++++++..|++++. ++|||.+|++|+|+++|++.+++|
T Consensus 526 ~~~~~~vp~~ei~~vl~~ll~~y~~~r~----~~E~f~~fi~R~G~e~~~~~l~~~ 577 (577)
T TIGR02042 526 RPFIDKLKDGDLEKVLEPLFVHFKQSRQ----SGESFGDFCDRVGFDALREFVESY 577 (577)
T ss_pred hHHhcCcCHHHHHHHHHHHHHHHHHhcc----CCCCHHHHHHHcCcHHHHHHHhcC
Confidence 8886 89999999999999999998754 579999999999999999999864
No 21
>PRK09566 nirA ferredoxin-nitrite reductase; Reviewed
Probab=100.00 E-value=6.6e-33 Score=306.84 Aligned_cols=196 Identities=21% Similarity=0.315 Sum_probs=171.0
Q ss_pred hhceeEeeccCcccCCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHH
Q 008202 108 KFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRS 187 (574)
Q Consensus 108 k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~ 187 (574)
.|+|+|.|++. ++|||++++|+|++|++|++.|+++|++||+|+||||+||||+|+||+.++++++++++ ..
T Consensus 309 ~~~Gv~~qk~~-------G~~~v~v~vp~G~lt~~~l~~la~ia~~yg~g~irlT~~Qni~l~~i~~~~v~~l~~~~-~~ 380 (513)
T PRK09566 309 DHIGVHPQKQA-------GLNYVGLHVPVGRLYAEDMFELARLAEVYGSGEIRLTVEQNVIIPNIPDENLETFLAEP-LL 380 (513)
T ss_pred cccceeecCcC-------CeEEEEEEcCCccCCHHHHHHHHHHHHHhCCCeEEEcCCCCEEEeCCCHHHHHHHHHHH-hh
Confidence 47899999763 58999999999999999999999999999999999999999999999999999999997 44
Q ss_pred cCCCCCCCCCCCcceecCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCC
Q 008202 188 MGSTLGACGDLNRNVLAPPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNF 266 (574)
Q Consensus 188 ~g~t~~a~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~ 266 (574)
.++.+. +++..||+++||+ ++|..++.+|++++.+|.+.|..
T Consensus 381 ~~~~~~-~~~~~~~~vaC~G~~~C~~a~~dT~~~a~~l~~~l~~------------------------------------ 423 (513)
T PRK09566 381 QKFSLE-PGPLARGLVSCTGNQYCNFALIETKNRALALAKELDA------------------------------------ 423 (513)
T ss_pred ccCCCC-CCccccCceeCcCcccccccHhhHHHHHHHHHHHHHH------------------------------------
Confidence 455443 4789999999998 59999999999999999887631
Q ss_pred CCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEEEEec-CCC-cceeEEEEEccCCCCcCCccccccccccccC-
Q 008202 267 PDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSD-ENG-EPQGFNLYVGGGMGRTHRLETTFPRLGEQLG- 343 (574)
Q Consensus 267 ~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~-~~g-~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~- 343 (574)
...||+||||+|||||++|+++.++||||++... .+| ...||+||+||++|.. |++++.+.
T Consensus 424 ---------~~~lp~~~kI~iSGCpn~C~~~~iaDIG~~G~~~~~dg~~~~g~~i~lGG~~g~~-------~~~g~~~~~ 487 (513)
T PRK09566 424 ---------ELDLPQPVRIHWTGCPNSCGQPQVADIGLMGTKARKNGKTVEGVDIYMGGKVGKD-------AKLGECVQK 487 (513)
T ss_pred ---------hcCCCCceEEEEECChhhhhchhhCCEEEEEEEeecCCcccceEEEEeCCccCcc-------ccccchhhc
Confidence 1358999999999999999999999999999863 123 2469999999998864 78999986
Q ss_pred CCChhHHHHHHHHHHHHHHHh
Q 008202 344 YVPKEDILYAVKAIVVTQREN 364 (574)
Q Consensus 344 ~v~~eev~~~~~ai~~~~rd~ 364 (574)
+|+++++++++++|+..|.+.
T Consensus 488 ~v~~~ev~~~i~~l~~~~~~~ 508 (513)
T PRK09566 488 GIPCEDLKPVLKDLLIEQFGA 508 (513)
T ss_pred CcCHHHHHHHHHHHHHHHhhh
Confidence 799999999999988877654
No 22
>PRK13504 sulfite reductase subunit beta; Provisional
Probab=100.00 E-value=6.2e-33 Score=310.42 Aligned_cols=214 Identities=19% Similarity=0.242 Sum_probs=184.8
Q ss_pred hhceeEeeccCcccCCccceEEEEEEcCCccccHH----HHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHH
Q 008202 108 KFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQ----LYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRS 183 (574)
Q Consensus 108 k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~----ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~ 183 (574)
.+.|+++|++ +.|+|++++|+|+||++ |++.|++||++|| +.||||++|||+|+||+.++++++.+.
T Consensus 342 ~~~G~~~q~~--------G~~~v~v~vp~Grl~~~~~~~~l~~La~iA~~yg-~~irlT~~Qnl~l~~i~~~~~~~l~~~ 412 (569)
T PRK13504 342 DRLGWVEGID--------GKWHLTLFIENGRIKDYPGRPLKTGLREIAKIHK-GDFRLTANQNLIIANVPPSDKAKIEAL 412 (569)
T ss_pred ceeEEEecCC--------CcEEEEEEecCEEecCCCcHHHHHHHHHHHHHhC-CEEEEeCCCCEEEcCCCHHHHHHHHHH
Confidence 5789998863 48999999999999999 9999999999999 899999999999999999999999999
Q ss_pred HHHHcCCCCCC-CCCCCcceecCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCC
Q 008202 184 IIRSMGSTLGA-CGDLNRNVLAPPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNS 261 (574)
Q Consensus 184 L~~~~g~t~~a-~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~ 261 (574)
| ++.|+.... +++.+|++++||+ ++|+.++.+++.++..|.+.|...
T Consensus 413 L-~~~gl~~~~~~~~~~~~ivAC~G~~~C~~a~~~t~~~a~~l~~~l~~~------------------------------ 461 (569)
T PRK13504 413 L-REYGLIDGVEESPLRRNSMACVALPTCGLAMAEAERYLPSFIDRIEAL------------------------------ 461 (569)
T ss_pred H-HhCCCCCCCCCCCceeceeecCCcccccchhhhHHHHHHHHHHHHHHH------------------------------
Confidence 9 888865444 3788999999998 699999999999888887766310
Q ss_pred CCCCCCCCCCCcccCCCC-CCceEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCcccccccccc
Q 008202 262 HGTNFPDSPEPIYGTQFL-PRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGE 340 (574)
Q Consensus 262 ~~~~~~~~~e~~yg~~~L-PrKfkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~ 340 (574)
+....| |.||+|+||||||+|++++++||||++... .+|+||+||+.+. +++++
T Consensus 462 ------------~~~~~l~~~~i~I~vSGCpn~Ca~~~iaDIG~vG~~~-----~~y~i~lGG~~~~--------~~~~~ 516 (569)
T PRK13504 462 ------------LAKHGLSDEHIVIRMTGCPNGCARPYLAEIGLVGKAP-----GRYNLYLGGSFNG--------TRLPK 516 (569)
T ss_pred ------------HhhcCCCCCceEEEEeCCcccccccccCcEEEEecCC-----CeEEEEECCCCCC--------Cccch
Confidence 112347 899999999999999999999999998643 4799999998752 57888
Q ss_pred ccC-CCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHhhhhHHHHHHH
Q 008202 341 QLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVE 392 (574)
Q Consensus 341 ~l~-~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve 392 (574)
.+. .|+.++++++++++++.|++++. ..|||.+|++|+|+ +++.++
T Consensus 517 ~~~~~v~~~~v~~~l~~ll~~y~~~~~----~~E~f~~~~~R~g~--~~~~~~ 563 (569)
T PRK13504 517 MYRENITEEEILATLDPLLGRWAKERE----PGEGFGDFVIRAGI--IREVLD 563 (569)
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHhcC----CCCCHHHHHHHcch--HHhhhc
Confidence 886 79999999999999999999865 57999999999999 555443
No 23
>PF01077 NIR_SIR: Nitrite and sulphite reductase 4Fe-4S domain; InterPro: IPR006067 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP) (IPR005117 from INTERPRO), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a siroheme through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. In the E. coli SiR-HP enzyme (1.8.1.2 from EC), the iron is bound to cysteine residues at positions 433, 439, 478 and 482, the latter also forming the siroheme ligand.; GO: 0016491 oxidoreductase activity, 0020037 heme binding, 0051536 iron-sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 1ZJ8_B 1ZJ9_A 2AKJ_A 3VKT_A 3VKR_A 3VKS_A 3B0M_A 3B0N_A 3VKP_A 3B0J_A ....
Probab=99.97 E-value=2.6e-31 Score=250.40 Aligned_cols=153 Identities=41% Similarity=0.688 Sum_probs=128.4
Q ss_pred CCCCCcceecCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCc
Q 008202 195 CGDLNRNVLAPPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPI 273 (574)
Q Consensus 195 ~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~ 273 (574)
.||.+|||++||+ .+|+.++.|+.+++.+|.++|...
T Consensus 1 ~g~~vrnv~aC~g~~~C~~a~~dt~~la~~l~~~~~~~------------------------------------------ 38 (157)
T PF01077_consen 1 SGDTVRNVTACPGSGFCPLALIDTKPLARELEDYLEER------------------------------------------ 38 (157)
T ss_dssp -SSSBHHEEESTGGGTBTT-SSBHHHHHHHHHHHTHHH------------------------------------------
T ss_pred CCCCCcccccCCChhhCchHHhCHHHHhhHhhhccccc------------------------------------------
Confidence 4789999999998 499999999999999999776421
Q ss_pred ccCCCCCCceEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC---CCChhHH
Q 008202 274 YGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG---YVPKEDI 350 (574)
Q Consensus 274 yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~---~v~~eev 350 (574)
|....||+||||+|||||++|+.+.++||||+++..+.+. .||+|||||++|++ |+++..+. +++.|++
T Consensus 39 ~~~~~lp~k~kI~isGCpn~C~~~~i~DIG~~g~~~~~~~-~g~~v~vGG~~g~~-------~~~~~~~~~~~~~~~ee~ 110 (157)
T PF01077_consen 39 FEDPNLPRKFKIAISGCPNSCARPQINDIGFIGVKKPNGE-EGFDVYVGGGLGRH-------PRLGRELALAGFVPEEEV 110 (157)
T ss_dssp HHCSCSSS-BEEEEESSTTSTTSGGGSSEEEEEEEESTCE-EEEEEEES-BESTS-------TBEBEEEEEEEEEEGGGH
T ss_pred ccccccccccccceeecccccccccccccccceeeecccc-ceeeeeecccccCC-------CCccceeeccccccHHHH
Confidence 1235799999999999999999999999999999875332 39999999999987 67776664 6899999
Q ss_pred HHHHHHHHHHHHHhCCCCcchhhhHHHHHHHhhhhHHHHHHHHHhCCCC
Q 008202 351 LYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKF 399 (574)
Q Consensus 351 ~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve~~~g~~~ 399 (574)
++++++++++|+ |++.+++++||+++|+|+|+|+|+++|+++++++|
T Consensus 111 ~~~i~~il~~y~--~~~~~~~~er~~~~i~r~G~e~~~~~v~~~~~~~~ 157 (157)
T PF01077_consen 111 LEVIEAILEYYR--GNREARKKERFKDFIERLGFEKFREEVEERLGHKF 157 (157)
T ss_dssp HHHHHHHHHHHH--S-HSSGTT-SHHHHHHHHHHHHHHHHHHHTSCGG-
T ss_pred HHHHHHHHHHHH--HhccCCCCCCHHHHHHHHCHHHHHHHHHHHhCcCC
Confidence 999999999999 77788899999999999999999999999998764
No 24
>TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component. In cyanobacteria and plant species, sulfite reductase ferredoxin (EC 1.8.7.1) catalyzes the reduction of sulfite to sulfide.
Probab=99.97 E-value=7.7e-30 Score=283.81 Aligned_cols=210 Identities=17% Similarity=0.198 Sum_probs=178.2
Q ss_pred hhceeEeeccCcccCCccceEEEEEEcCCccccH----HHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHH
Q 008202 108 KFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSN----QLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRS 183 (574)
Q Consensus 108 k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~----~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~ 183 (574)
.+.|+++|.+ +.|++++++|.|+|++ +|+..|+++|+ ||++.||+|++|||.|.||+.++++++.+.
T Consensus 326 ~~~g~~~~~~--------G~~~v~v~~p~G~l~~~~~~~~l~~la~iA~-~~~~~irlT~~Qnl~l~~v~~~~~~~l~~~ 396 (541)
T TIGR02041 326 DRYGWVKGID--------GNWHLTLFIESGRIADYPDKPLMTGLREIAK-IHKGDFRITPNQNLIIANVPEGGKAKIEAL 396 (541)
T ss_pred cccCeecCCC--------CcEEEEEEecCceeecCccHHHHHHHHHHHH-hcCCeEEEeCCCCEEEcCCCHHHHHHHHHH
Confidence 3567776642 5899999999999995 59999999997 567999999999999999999999998888
Q ss_pred HHHHcCCCCCCCCCCCcceecCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCC
Q 008202 184 IIRSMGSTLGACGDLNRNVLAPPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSH 262 (574)
Q Consensus 184 L~~~~g~t~~a~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~ 262 (574)
| ++.|+..++.++..|||++||+ ++|..++.+|+.++.+|.+.|...
T Consensus 397 l-~~~gl~~~~~~~~~~~vvAC~G~~~C~~a~~dT~~~a~~l~~~l~~~------------------------------- 444 (541)
T TIGR02041 397 A-RQYGLIDGKVTALRRNSMACVALPTCPLAMAEAERYLPDFIDKLDNI------------------------------- 444 (541)
T ss_pred H-HHcCCCCCCCCceeeccEECCCccchhhhHHHHHHHHHHHHHHHHHH-------------------------------
Confidence 8 8999877677888999999998 699999999999999888766310
Q ss_pred CCCCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCcccccccccccc
Q 008202 263 GTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQL 342 (574)
Q Consensus 263 ~~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l 342 (574)
+ ++ |+ ..|.++||+||||||+|++++++||||++... .+|+|++||..+. +++++.+
T Consensus 445 ---~---~~--~~--~~~~~~~I~iSGCpn~Ca~~~~adIG~~G~~~-----~~y~l~lGG~~~~--------~~~g~~~ 501 (541)
T TIGR02041 445 ---M---EK--HG--LADEEIVLRMTGCPNGCGRPYLAEIGLVGKAP-----GRYNLMLGGNRRG--------QRLPRLY 501 (541)
T ss_pred ---H---Hh--cC--CCCCceEEEEecCCccccccccCcEEEEEecc-----ceEEEEECCCCCC--------CchhHHH
Confidence 0 00 11 24789999999999999999999999998643 3699999997531 6889888
Q ss_pred C-CCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHhhhh
Q 008202 343 G-YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIE 385 (574)
Q Consensus 343 ~-~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e 385 (574)
. .|+.++++++++.+++.|++++. .+|||.++++|+|++
T Consensus 502 ~~~v~~~~v~~~v~~ll~~y~~~~~----~~E~f~~~~~R~g~~ 541 (541)
T TIGR02041 502 RENITEPEILAELDELLGRYAAERK----PGEGFGDFLIRTGII 541 (541)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHhcC----CCCCHHHHHHhcCCC
Confidence 6 69999999999999999999865 479999999999974
No 25
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.95 E-value=3.8e-27 Score=273.77 Aligned_cols=192 Identities=19% Similarity=0.267 Sum_probs=157.7
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHhCCCC--CCCC--------------CCC-----cccccccCCeeeecCCcEEEEEEeC
Q 008202 373 SRMKYLISSWGIEKFRSVVEQYYGKKF--EPFR--------------QLP-----EWEFKSHLGWHEQGDGGLFCGLHVD 431 (574)
Q Consensus 373 aRlk~li~r~G~e~fr~~ve~~~g~~~--~~~~--------------~~~-----~~~~~~~~G~~~q~dG~~~v~v~vp 431 (574)
+-+..+|...++..|.+.+.+. |+.. +..+ .+. .....|++.-+.|+||+|++++++|
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~-~~~~gc~~c~p~~~~~l~~~~~~~~~~~~~~~~~~~n~~~~~n~Qk~g~~~v~~~~p 572 (847)
T PRK14989 494 QELFHLIRVEGIKTFEELLAKH-GKGYGCEVCKPTVGSLLASCWNEYILKPQHTPLQDTNDNFLANIQKDGTYSVIPRSA 572 (847)
T ss_pred HHHHHHHHHcCCCCHHHHHHHh-CCCCCCchhhHHHHHHHHhcCccccCChhhccccccccccccccccCCeEEEEEEcC
Confidence 4466677777888887777654 3320 0000 000 0123567777889999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHhCCeEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchh
Q 008202 432 NGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAIT 511 (574)
Q Consensus 432 ~Grl~~~~l~~La~la~~yg~~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~ 511 (574)
+|+++++||+.|+++|++||..+|+|++|||+|++|+.++++++++.|.+.||.+...+++.+|++++|+|+++|++++.
T Consensus 573 ~G~lt~~ql~~ia~iA~kyg~~~~iT~~Q~i~L~~i~~~~l~~v~~~L~~~Gl~~~~~~g~~vr~v~aC~G~~~C~~g~~ 652 (847)
T PRK14989 573 GGEITPEGLMAVGRIAREFNLYTKITGSQRIGLFGAQKDDLPEIWRQLIEAGFETGHAYAKALRMAKTCVGSTWCRYGVG 652 (847)
T ss_pred CcEeCHHHHHHHHHHHHHHCCcEEEcCCCceEeCCCCHHHHHHHHHHHHHCCCCcCCCCCCCcCceeeCCCCCccccccc
Confidence 99999999999999999999889999999999999999999999999999999987766777899999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeecCCceEEEE
Q 008202 512 EAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVFQ 572 (574)
Q Consensus 512 et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~~g~Y~l~l 572 (574)
||+.++. +|++.+. +++.|+|+||+||||||+|++|+++||||+|+.. +|+||+
T Consensus 653 dt~~la~----~l~~~~~--~~~~P~k~ki~vSGC~~~C~~~~i~DiG~i~~~~-G~~v~v 706 (847)
T PRK14989 653 DSVGLGV----ELENRYK--GIRTPHKMKFGVSGCTRECAEAQGKDVGIIATEK-GWNLYV 706 (847)
T ss_pred cHHHHHH----HHHHHhc--cCCCCCceEEEEeCCcccccccccccEEEEEecC-ceEEEE
Confidence 9988764 4555543 3445689999999999999999999999999865 499997
No 26
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.94 E-value=1.8e-26 Score=267.58 Aligned_cols=191 Identities=20% Similarity=0.257 Sum_probs=157.0
Q ss_pred hhhHHHHHHHhhhhHHHHHHHHHhCCCCC-C---CCCC---------Cc--------ccccccCCeeeecCCcEEEEEEe
Q 008202 372 YSRMKYLISSWGIEKFRSVVEQYYGKKFE-P---FRQL---------PE--------WEFKSHLGWHEQGDGGLFCGLHV 430 (574)
Q Consensus 372 ~aRlk~li~r~G~e~fr~~ve~~~g~~~~-~---~~~~---------~~--------~~~~~~~G~~~q~dG~~~v~v~v 430 (574)
++-+...|...++..|.+.+++ +|+... . .+|. +. .-..++++++.|+||+|++++++
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gc~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qk~g~~~v~~~~ 560 (785)
T TIGR02374 482 RDELFEEIQARGFTTFAEVMNQ-LGWKTKNGCSTCKPAVQYYLAMLYPGFILDEEATSLSNDHFLANIQKDGTYSVIPRM 560 (785)
T ss_pred HHHHHHHHHHcCCCCHHHHHHH-hCCCCCCCCcccHHhHHHHHHhcCCcccccchhccccccceeeccccCCceEEEEec
Confidence 4567788888888888877765 344321 1 1110 00 01346889999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccc
Q 008202 431 DNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLA 509 (574)
Q Consensus 431 p~Grl~~~~l~~La~la~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~a 509 (574)
|+|+++++||+.|+++|++||. .+|+|++|||+|++|++++++++++.|.+.|+. .+++...|++++|+|.++|+++
T Consensus 561 ~~G~lt~~ql~~la~ia~~yg~~~i~iT~~Q~i~l~gi~~~~l~~i~~~L~~~gl~--~~~g~~~r~v~aC~G~~~C~~g 638 (785)
T TIGR02374 561 YGGRTNPEQLRTIANIAEAYSIPYVKITGGQRLDLFGAKKDDLPNIWKDLKMPGYE--HAYGKALRTVKTCVGSQWCRYG 638 (785)
T ss_pred CCcccCHHHHHHHHHHHHHhCCCeEEEcCCceEEECCCCHHHHHHHHHHHHhCCCC--CCCCCCccCcccCCCccccCcc
Confidence 9999999999999999999998 799999999999999999999999999999996 3456777999999999999999
Q ss_pred hhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeecCCceEEEE
Q 008202 510 ITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVFQ 572 (574)
Q Consensus 510 l~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~~g~Y~l~l 572 (574)
+.||+.++. +|++.+.... .|+|+||+||||||+|++|+++||||+|+.. +|+||+
T Consensus 639 ~~ds~~la~----~l~~~~~~~~--~p~k~ki~vSGC~~~C~~~~~~DiG~i~~~~-g~~v~v 694 (785)
T TIGR02374 639 NQDSVQLAI----QLERRYEGLR--TPHKIKIGVSGCERECAEAAGKDVGVIATEK-GWNLYV 694 (785)
T ss_pred hhhHHHHHH----HHHHHhcccC--CCCceEEEEECCccccchhhhCcEEEEEecC-CeEEEE
Confidence 999988765 4444454433 4579999999999999999999999999865 599997
No 27
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=99.94 E-value=2e-26 Score=233.55 Aligned_cols=147 Identities=24% Similarity=0.412 Sum_probs=134.8
Q ss_pred ccCCeeeecCCcEEEEEEeCC-CCcCHHHHHHHHHHHHHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCC
Q 008202 412 SHLGWHEQGDGGLFCGLHVDN-GRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRY 489 (574)
Q Consensus 412 ~~~G~~~q~dG~~~v~v~vp~-Grl~~~~l~~La~la~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~ 489 (574)
++.|+.++.++.|++++.+|. |.+++++|+.|+++|++||. .|++|.+|++.|++|++++++++.++|++.||..++
T Consensus 18 ~~~Gvi~r~~~t~~vRv~~ppgg~l~~e~Lr~i~diAekyG~G~i~iT~rqg~ei~~i~~e~~~~v~~~L~~iG~~~G~- 96 (317)
T COG2221 18 VGYGVIKRRDGTYTVRVRTPPGGFLSAETLRKIADIAEKYGDGLIHITSRQGLEIPGISPEDADDVVEELREIGLPVGS- 96 (317)
T ss_pred cCCceeeeccCcEEEEEecCCCCccCHHHHHHHHHHHHHhCCCeEEEEecCceEeccCCHHHHHHHHHHHHHcCCCCCC-
Confidence 788999999999999999986 99999999999999999998 799999999999999999999999999999999976
Q ss_pred CCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeecC
Q 008202 490 VDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGP 565 (574)
Q Consensus 490 ~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~~ 565 (574)
.++.+|+++||+|...|..|+.||..++ .+|++.|.+..+ |.+|||.+|||||+|++|+..||||+|.-.
T Consensus 97 ~G~~vr~i~aC~G~~~C~~a~~Dt~~la----~~l~e~f~~~~~--P~KfKI~vsGCPn~C~r~~~~DigivGv~~ 166 (317)
T COG2221 97 TGPAVRAIVACPGPRTCETALYDTTELA----RRLEEEFLEVPV--PYKFKIAVSGCPNDCTRPQAHDIGIVGVWK 166 (317)
T ss_pred cchhhhhhhcCcCcccccccccChHHHH----HHHHHHhhcCCC--CceEEEEeecCCcccccccccceeEEEeec
Confidence 5778899999999999999999998865 577777765444 579999999999999999999999999743
No 28
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=99.94 E-value=1.1e-26 Score=243.90 Aligned_cols=141 Identities=17% Similarity=0.236 Sum_probs=129.3
Q ss_pred cCCcEEEEEEeCCCCcCHHHHHHHHHHHHHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccc
Q 008202 420 GDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAM 498 (574)
Q Consensus 420 ~dG~~~v~v~vp~Grl~~~~l~~La~la~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~ 498 (574)
+++.|++++.+|+ +++++||+.|+++|++||. .+|||++|||+|++|+.+++++|.++|.++||.+....+..+|+++
T Consensus 27 ~~~~~mvRv~ip~-~lt~eqLr~LAdiaekyg~g~i~lTtrQnI~l~~I~~edl~~i~~~L~~~Gl~~~~~G~~vrrni~ 105 (341)
T TIGR02066 27 GDVIYTVKAGTPR-LLSVDTLRKLCDIADKYSDGYLRWTIRNNVEFLVSDESKIQPLIDELEEVGFPVGGTGDAVKGNIV 105 (341)
T ss_pred CCcEEEEEeCCCc-ccCHHHHHHHHHHHHHhCCCeEEEeccCCEEEecCCHHHHHHHHHHHHhccCCCCCCCCccccccc
Confidence 4689999999999 9999999999999999997 6999999999999999999999999999999998654444544999
Q ss_pred cCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEee
Q 008202 499 ACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGD 563 (574)
Q Consensus 499 AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~ 563 (574)
||+|.++|++++.||++++..|.++|.+.+...++| .||||+||||||+|++|+++||||+|.
T Consensus 106 aC~G~~~C~~a~~dt~~l~~~l~~~l~~~~~~~~lP--~KfKI~vSGC~~~C~~~~~~Dig~~g~ 168 (341)
T TIGR02066 106 HTQGWLHCHIPAIDASGIVKAVMDELYEYFTDHKLP--AMVRISLSCCANMCGGVHASDIAIVGI 168 (341)
T ss_pred cCcCCCCCCcchhchHHHHHHHHHHHHHHHhccccc--ccceeccccccccccchhhcccccccc
Confidence 999999999999999999998999998888766654 799999999999999999999999995
No 29
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.92 E-value=3.1e-25 Score=244.34 Aligned_cols=203 Identities=24% Similarity=0.335 Sum_probs=183.1
Q ss_pred ccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcCCCCCCCCCCCccee
Q 008202 124 KSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVL 203 (574)
Q Consensus 124 ~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g~t~~a~gd~~RNV~ 203 (574)
++++|.++.|+|||.+++++|++|+++|++||..++.+|.-|.|-|.|+++++|+++|..|... +..+-|-..|.|.
T Consensus 549 kdgTysvvPrm~GG~~~~~~L~~Iadva~ky~l~~vK~Tg~Qri~l~G~k~edLp~~w~~l~~~---sg~ay~k~lrtvK 625 (793)
T COG1251 549 KDGTYSVVPRMPGGVTNPEELRAIADVAEKYNLPTVKITGGQRIDLLGVKKEDLPAIWADLGMA---SGHAYGKALRTVK 625 (793)
T ss_pred cCCeEEEeccccCcccCHHHHHHHHHHHHHhCcceeeccCCceeeecCCCcccchhHHHhcccc---chhHHHHhhhhHh
Confidence 4579999999999999999999999999999999999999999999999999999999999444 3345667799999
Q ss_pred cCCCC-CCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCc
Q 008202 204 APPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRK 282 (574)
Q Consensus 204 acp~~-~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrK 282 (574)
.||+. +|.....|+..+...|.+.+. ...+|.|
T Consensus 626 ~Cvg~~~Cr~g~qds~~Lgi~le~~~~----------------------------------------------gl~~P~k 659 (793)
T COG1251 626 TCVGSTFCRFGTQDSVGLGIRLEKRYE----------------------------------------------GLRTPHK 659 (793)
T ss_pred hCCCcchhhhCccchhhHhHHHHHHhc----------------------------------------------cCCCCcc
Confidence 99986 999999999999999876542 2579999
Q ss_pred eEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHHHHHHHHHH
Q 008202 283 FKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQ 361 (574)
Q Consensus 283 fkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~~~ai~~~~ 361 (574)
+|+++||||++|+.+.+.|+|++++. .||++|+||.-|.+ |+.++.+. ..++|++++++.+++.+|
T Consensus 660 ~k~~vSgCpr~CaEa~~KDvGii~t~------~G~~l~vgG~~g~~-------~r~a~~~~~~~~e~e~l~~i~~~~~~y 726 (793)
T COG1251 660 VKMAVSGCPRNCAEAGIKDVGIIGTE------KGWNLYVGGNGGMK-------PRHADLLAKVLTEEEVLEYIDAFLQYY 726 (793)
T ss_pred eeEeeccCCcccccccCcceEEEecc------cCceEEeccccCcc-------hhhhhhhhhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999765 48999999988765 89999987 479999999999999999
Q ss_pred HHhCCCCcchhhhHHHHHHHhhhhHHHHHHH
Q 008202 362 RENGRRDDRKYSRMKYLISSWGIEKFRSVVE 392 (574)
Q Consensus 362 rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve 392 (574)
|+.++ +.+|+..||+++|++.|++++.
T Consensus 727 r~~~~----~leR~~~wi~~~Gl~~~k~~v~ 753 (793)
T COG1251 727 RETAD----YLERTAPWLDRLGLEHIKEVVL 753 (793)
T ss_pred HHHHH----HHHHHHHHhhhcchHHHHHHhh
Confidence 99887 5799999999999999999765
No 30
>TIGR02435 CobG precorrin-3B synthase. An iron-sulfur protein. An oxygen atom from dioxygen is incorporated into the macrocycle at C-20. In the aerobic cobalamin biosythesis pathway, four enzymes are involved in the conversion of precorrin-3A to precorrin-6A. The first of the four steps is carried out by EC 1.14.13.83, precorrin-3B synthase (CobG), yielding precorrin-3B as the product. This is followed by three methylation reactions, which introduce a methyl group at C-17 (CobJ; EC 2.1.1.131), C-11 (CobM; EC 2.1.1.133) and C-1 (CobF; EC 2.1.1.152) of the macrocycle, giving rise to precorrin-4, precorrin-5 and precorrin-6A, respectively.
Probab=99.92 E-value=9.7e-25 Score=234.34 Aligned_cols=149 Identities=16% Similarity=0.170 Sum_probs=131.1
Q ss_pred cCCcEEEEEEeCCCCcCHHHHHHHHHHHHHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccc
Q 008202 420 GDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAM 498 (574)
Q Consensus 420 ~dG~~~v~v~vp~Grl~~~~l~~La~la~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~ 498 (574)
.|| |++|+++|+|+|+++|++.|+++|++||. .||+|++|||+|++|+.+ ++++.+.|.+.||.+..+.+..+||++
T Consensus 15 ~dg-~mvRvr~p~G~lt~~ql~~la~ia~~yg~g~i~lTtRQniql~gv~~~-~~~l~~~l~~~GL~~~~~~g~~~Rnv~ 92 (390)
T TIGR02435 15 GDG-LLVRVRLPGGRLTPAQAIGLADLAERLGNGIIEVTARGNLQLRGLTAD-HDALSQALLAAGLGAAGAAADDIRNIE 92 (390)
T ss_pred CCe-eEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEEEccccceecccCcc-HHHHHHHHHHCCCCCccccCCcccccc
Confidence 455 79999999999999999999999999998 699999999999999999 999999999999988666677889999
Q ss_pred cCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeecCCc---eEEEE
Q 008202 499 ACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNS---YQVFQ 572 (574)
Q Consensus 499 AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~~g~---Y~l~l 572 (574)
+||+...|+.++.||+.++.+|.+.+........| |.||||+||||+|+|++++++||||++...+. |+|++
T Consensus 93 ~cp~~g~~~~~~~dt~~la~~l~~~l~~~~~~~~L--PrKfki~vsgc~~~c~~~~~~DIG~~~~~~~~~~gf~v~v 167 (390)
T TIGR02435 93 VSPLAGIDPGEIADTRPLAAELRAALENERALLEL--PPKFSVAIDGGGRLVLLGDTADVRLQALTTGAGVAWVVSL 167 (390)
T ss_pred cCccccCCCccccchHHHHHHHHHHHhcChhhhcC--CCceEEEEECCCccccCCCCCCEEEEEEecCCEEEEEEEE
Confidence 99998889999999999987777766543222234 57999999999999999999999999986655 88886
No 31
>COG0155 CysI Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.7e-23 Score=228.66 Aligned_cols=207 Identities=22% Similarity=0.311 Sum_probs=178.8
Q ss_pred HhhhceeEeeccCcccCCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHH
Q 008202 106 LIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSII 185 (574)
Q Consensus 106 ~~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~ 185 (574)
...+.|++.|++ +.+++.+-+|.|+|+++.+..+++.++++|.|.+|||..|||.|.+|+.+++..+.+.+
T Consensus 293 ~~d~~Gw~~~~~--------g~~~~g~~v~~Grl~~~~~~~l~~~~~~~~~~eiRlT~~QnLii~~v~~~~~~~i~~~l- 363 (510)
T COG0155 293 NGDHIGWVPQKD--------GLWHLGLAVPNGRLKAEGLIPLATEAEEIGFGEIRLTPNQNLIIPNVPEAELEAILRIL- 363 (510)
T ss_pred CCCceeEEEcCC--------CcEEEEEecceeeecCccchHHHHHHHHHhhccEEeccCcceEecCCCHHHHHHHHHHH-
Confidence 457899999984 48999999999999999999999999999999999999999999999999999999998
Q ss_pred HHcCCCCCCCCCCCcceecCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCC
Q 008202 186 RSMGSTLGACGDLNRNVLAPPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGT 264 (574)
Q Consensus 186 ~~~g~t~~a~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~ 264 (574)
.+.|+.. +..+..+|+++||+ |+|..+.++++..+..|.+.|.+.
T Consensus 364 ~~~Gl~t-~~~~l~~~~~AC~G~p~C~lA~aet~~~a~~i~~~l~~~--------------------------------- 409 (510)
T COG0155 364 AALGLVT-APSSLRRNSIACVGLPTCALALAETERDAPRIIARLEDL--------------------------------- 409 (510)
T ss_pred HHcCCCC-CCcchhhhcccCCCCCchhhhHhhHHHHHHHHHHHHHhh---------------------------------
Confidence 8888554 56788999999997 799999999999999999887531
Q ss_pred CCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC-
Q 008202 265 NFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG- 343 (574)
Q Consensus 265 ~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~- 343 (574)
.....+ -|+|+||||||.|+++++.+|||++... .+|+|++||+... +++++.++
T Consensus 410 ---------~~~~~~--~i~i~isGCpn~Ca~~~~a~Igl~G~~~-----~~y~v~lGG~~~~--------~~~~~~~~~ 465 (510)
T COG0155 410 ---------LDKHGL--PITLHISGCPNGCGRPHLAEIGLVGKAK-----GGYQVYLGGGADG--------TRGGKLYGE 465 (510)
T ss_pred ---------hcccCC--ceeEEeccCcchhcCcccCceeEeeccC-----cceEEEecCCCCC--------CccceeecC
Confidence 001234 7899999999999999999999999775 2599999993321 46677765
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHhh
Q 008202 344 YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWG 383 (574)
Q Consensus 344 ~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G 383 (574)
.++.+++.++++.++..|.+... ..|+|.+++.|.|
T Consensus 466 ~~~~~~i~~~~~~l~~~~~~~R~----~gE~f~d~~~R~g 501 (510)
T COG0155 466 NVPAEEILDAIDRLIGRYAKERH----EGESFGDFVIRAG 501 (510)
T ss_pred CCCHHHHHHHHHHHHHHHHhccC----CCccHHHHHHHhC
Confidence 69999999999999999998654 3599999999988
No 32
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=99.90 E-value=5e-24 Score=227.39 Aligned_cols=140 Identities=14% Similarity=0.251 Sum_probs=126.7
Q ss_pred CCcEEEEEEeCCCC-cCHHHHHHHHHHHHHhCC-eEEEc-cCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCcccc
Q 008202 421 DGGLFCGLHVDNGR-IAGKMKKTLREIIEKYNL-NVRIT-PNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITA 497 (574)
Q Consensus 421 dG~~~v~v~vp~Gr-l~~~~l~~La~la~~yg~-~irlT-~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~ 497 (574)
.+.|++++.+|.|+ ++++||+.|++|+++||. .+++| .+|||+|.+|++++++++.++|.+.|+..+. .++.+|++
T Consensus 79 ~~~~tvRv~~P~G~~~tteqLR~LaDiaekYGsG~~~~tgstqdIiL~gv~~e~le~i~~eL~~~G~dlgg-sG~~vRti 157 (402)
T TIGR02064 79 AEFHTVRVAQPSGKFYSTDYLRQLCDVWEKYGSGLTNFHGQTGDIVFLGTQTPQLQEIFEELTNLGTDLGG-SGSNLRTP 157 (402)
T ss_pred CeEEEEEEecCCCCCCCHHHHHHHHHHHHHhCCCEEEEeccccCEEEcCCCHHHHHHHHHHHhhcccCCCC-CCCCccce
Confidence 36789999999999 599999999999999997 58998 4899999999999999999999999998765 45667899
Q ss_pred ccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCC-cccEEEEee
Q 008202 498 MACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPY-MAELGLVGD 563 (574)
Q Consensus 498 ~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~-~aDIGlvG~ 563 (574)
++|+|..+|++++.||+.++.+|.+++.+.++...+| .|+||+||||||+|++++ ++||||+|+
T Consensus 158 ~aC~G~~~C~~a~~DT~~l~~~L~~~~~~~~~~~~lP--~KfKI~vSGCpn~C~~~~~~~DIG~iG~ 222 (402)
T TIGR02064 158 ESCVGPARCEFACYDTLKACYELTMEYQDELHRPAFP--YKFKFKFSGCPNDCVAAIARSDFAVIGT 222 (402)
T ss_pred ecCCCcccCCCcccccHHHHHHHHHHHHhhhhhccCC--ccccccccccccccccceeccCceeecc
Confidence 9999999999999999999998888887777665554 789999999999999999 999999996
No 33
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=99.89 E-value=4.1e-23 Score=215.77 Aligned_cols=147 Identities=26% Similarity=0.365 Sum_probs=121.8
Q ss_pred CCeeeec-CCcEEEEEEeCCCCcCHHHHHHHHHHHHHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHHC--CCC--CC
Q 008202 414 LGWHEQG-DGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQA--GLL--LP 487 (574)
Q Consensus 414 ~G~~~q~-dG~~~v~v~vp~Grl~~~~l~~La~la~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~--Gl~--~~ 487 (574)
-|+..|+ +|.|++++++|+|+++++||+.|+++|++||. .+|+|++|||+|++|+.++++++.+.|++. |+. ..
T Consensus 10 ~~~~~~~~~g~~~vrv~~p~G~lt~~qlr~la~ia~~yg~g~~~~TtrQ~i~l~~i~~~~~~~v~~~L~~~~~gl~~~~~ 89 (314)
T TIGR02912 10 NAFRVTKVRGKTAIRVRVPGGILPAKYLSVLQNIAETYGNGKVHITTRQGFEIPGIRFEDIDEVNKALQPIIEGLEINQE 89 (314)
T ss_pred CCeEEeecCCceEEEEEccceecCHHHHHHHHHHHHHhCCCeEEEecccceEecCcCHHHHHHHHHHHHHHhhccccccc
Confidence 3788887 49999999999999999999999999999997 799999999999999999999999999863 322 11
Q ss_pred ----CCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEee
Q 008202 488 ----RYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGD 563 (574)
Q Consensus 488 ----~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~ 563 (574)
...++.+|++++|+|...|++++.||+.++..|. +.+. +.+.+++|+||||||+|++++++||||+|.
T Consensus 90 ~~~~G~~g~~vR~i~aC~g~~~C~~~~~dt~~l~~~l~----~~~~----~~~~k~ki~iSGCp~~C~~~~~~DiG~~g~ 161 (314)
T TIGR02912 90 DVQKGYSASGTRNITACIGNRVCPFANYDTTKFAKRIE----KAVF----PNDYHVKIALTGCPNDCAKARMHDFGIIGM 161 (314)
T ss_pred ccccccccCCccceeeCCCCCCCCCCcccHHHHHHHHH----HHhh----cCCceEEEEEeCCCchhhHHHHhhcccccc
Confidence 1134556789999999999999999998765443 3332 234689999999999999999999999997
Q ss_pred cCCce
Q 008202 564 GPNSY 568 (574)
Q Consensus 564 ~~g~Y 568 (574)
....|
T Consensus 162 ~~~~~ 166 (314)
T TIGR02912 162 TEPQY 166 (314)
T ss_pred cCCce
Confidence 54433
No 34
>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism]
Probab=99.75 E-value=5.4e-18 Score=177.76 Aligned_cols=219 Identities=19% Similarity=0.184 Sum_probs=174.8
Q ss_pred HHHhhhceeEeeccCcccCCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHH
Q 008202 104 TQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRS 183 (574)
Q Consensus 104 ~~~~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~ 183 (574)
..+..|+|++.|.+ +.+.+.+.++.|++-+.+++..++.+.+|+.+.++||..|||.|.+|..+....|.+.
T Consensus 408 we~~dyfGwh~q~~--------gl~f~glhVe~GRve~l~~ktglRev~e~~~~e~rlT~nQniii~nv~te~~~~i~~~ 479 (638)
T KOG0560|consen 408 WERRDYFGWHKQEE--------GLSFVGLHVENGRVEALDMKTGLREVAEYGSGELRLTVNQNIIIPNVETEKTEAILQE 479 (638)
T ss_pred hccccccccccCCC--------CceEEEEEccccccccchhhhHHHHHHHhhcceeeecccccEEecccchhhhHHHHHH
Confidence 34567899999873 5788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCCCCCcceecCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCC
Q 008202 184 IIRSMGSTLGACGDLNRNVLAPPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSH 262 (574)
Q Consensus 184 L~~~~g~t~~a~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~ 262 (574)
|.....+...-.| ..-..++|++ |+|+.+++++...+-.|...+.
T Consensus 480 la~~~l~npefs~-L~~ss~AC~g~p~CglAi~Eser~lpkii~~ve--------------------------------- 525 (638)
T KOG0560|consen 480 LALYKLDNPEFSG-LRLSSVACVGLPTCGLAIAESERRLPKIITEVE--------------------------------- 525 (638)
T ss_pred HHHhccCCcchhh-hhhhhhcccCCCcchhHHHHHhhchhHHHHHHH---------------------------------
Confidence 9444335554444 6778899997 7999999998776655544432
Q ss_pred CCCCCCCCCCcccCCCCCCc-eEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccc
Q 008202 263 GTNFPDSPEPIYGTQFLPRK-FKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQ 341 (574)
Q Consensus 263 ~~~~~~~~e~~yg~~~LPrK-fkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~ 341 (574)
.++....||+. +-+.++||||.|.+++++||||++.. ..-|++++||+.-. -++++.
T Consensus 526 ---------~~~e~vgl~~dsIvmr~TGCPNgCsrp~vaeig~vGka-----pnty~~~lgG~p~~--------~~l~k~ 583 (638)
T KOG0560|consen 526 ---------RMFEEVGLPRDSIVMRMTGCPNGCSRPWVAEIGLVGKA-----PNTYNLMLGGGPVG--------QRLNKL 583 (638)
T ss_pred ---------HHHHHhCCCCCceEEEeccCCCCCCcchhhheeecccC-----CcceeeecCCcchH--------HHHHHH
Confidence 01112358887 99999999999999999999999743 24699999998532 366666
Q ss_pred cC-CCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHhhhhHHHHH
Q 008202 342 LG-YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSV 390 (574)
Q Consensus 342 l~-~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e~fr~~ 390 (574)
.+ .|..+++.++++.++..|.=. |. -+|-|.+++-|+|+++-.++
T Consensus 584 ~~~~vkd~ei~~i~kpl~k~~~Le--re--~~E~fgd~~~rvg~ek~~ee 629 (638)
T KOG0560|consen 584 YGRIVKDSEIGEIYKPLFKRYALE--RE--VGEHFGDEFIRVGIEKEEEE 629 (638)
T ss_pred HhccccHHHHHHHHhhhhhhhhhh--HH--HHHHHHHHHHhhcceecccc
Confidence 66 689999999999999888643 22 46889999999998865544
No 35
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.74 E-value=8.7e-18 Score=185.92 Aligned_cols=189 Identities=23% Similarity=0.338 Sum_probs=150.7
Q ss_pred hhhhHHHHHHHhhhhHHHHHHHHHhCCCC-----CCCC-----------CCC-----cccccccCCeeeecCCcEEEEEE
Q 008202 371 KYSRMKYLISSWGIEKFRSVVEQYYGKKF-----EPFR-----------QLP-----EWEFKSHLGWHEQGDGGLFCGLH 429 (574)
Q Consensus 371 ~~aRlk~li~r~G~e~fr~~ve~~~g~~~-----~~~~-----------~~~-----~~~~~~~~G~~~q~dG~~~v~v~ 429 (574)
.+.-++.+|...|+..|.+.+++. +++. -|+. ..+ .-...+| -+-|+||+|.+..+
T Consensus 482 ~~~~~~~~i~~~~~~~~~~v~~~~-~~~~gc~~c~pa~~~~l~~~~~~~~~~~~~s~~~~~~~h--aniqkdgTysvvPr 558 (793)
T COG1251 482 SRDEVVHLIRAKGLKTFPEVMNVL-GWKTGCAKCRPAINYYLASCWPDEYEDDEQSRLQNERDH--ANIQKDGTYSVVPR 558 (793)
T ss_pred CHHHHHHHHHHhccCCHHHHHHHh-cccCCcceechhhccceeeeccCccCcchhhhhhcccch--hhcccCCeEEEecc
Confidence 356678888888998888877653 3321 1100 000 0012234 34488999999999
Q ss_pred eCCCCcCHHHHHHHHHHHHHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCcc
Q 008202 430 VDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPL 508 (574)
Q Consensus 430 vp~Grl~~~~l~~La~la~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~ 508 (574)
+|+|++++++|++|+++|++||. .+.+|..|.|-|.|+++++++++++.|... .+.+.....|++.+|||+.+|++
T Consensus 559 m~GG~~~~~~L~~Iadva~ky~l~~vK~Tg~Qri~l~G~k~edLp~~w~~l~~~---sg~ay~k~lrtvK~Cvg~~~Cr~ 635 (793)
T COG1251 559 MPGGVTNPEELRAIADVAEKYNLPTVKITGGQRIDLLGVKKEDLPAIWADLGMA---SGHAYGKALRTVKTCVGSTFCRF 635 (793)
T ss_pred ccCcccCHHHHHHHHHHHHHhCcceeeccCCceeeecCCCcccchhHHHhcccc---chhHHHHhhhhHhhCCCcchhhh
Confidence 99999999999999999999999 589999999999999999999999887544 45556777899999999999999
Q ss_pred chhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeecCCceEEEE
Q 008202 509 AITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVFQ 572 (574)
Q Consensus 509 al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~~g~Y~l~l 572 (574)
+..+|..+. -+|++.+. +++.|+|+|+.+||||+.|+.+.+.|+|++++.. +|++|+
T Consensus 636 g~qds~~Lg----i~le~~~~--gl~~P~k~k~~vSgCpr~CaEa~~KDvGii~t~~-G~~l~v 692 (793)
T COG1251 636 GTQDSVGLG----IRLEKRYE--GLRTPHKVKMAVSGCPRNCAEAGIKDVGIIGTEK-GWNLYV 692 (793)
T ss_pred CccchhhHh----HHHHHHhc--cCCCCcceeEeeccCCcccccccCcceEEEeccc-CceEEe
Confidence 999998754 46666654 4566789999999999999999999999999854 599986
No 36
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=99.67 E-value=6.6e-17 Score=131.51 Aligned_cols=66 Identities=32% Similarity=0.597 Sum_probs=60.9
Q ss_pred EeeccCcccCCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHH
Q 008202 113 YQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSI 184 (574)
Q Consensus 113 y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L 184 (574)
|+|+|.+ ++||+|+++|+|++|++|+++|+++|++||.|.||+|+||||+|+||+.+++++++++|
T Consensus 1 ~~qk~~~------g~~~v~~~~~~G~i~~~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L 66 (69)
T PF03460_consen 1 HPQKDGD------GFYMVRIRIPGGRISAEQLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIFEEL 66 (69)
T ss_dssp EECTTST------TEEEEEEB-GGGEEEHHHHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHH
T ss_pred CCCCcCC------eEEEEEEeCCCEEECHHHHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHH
Confidence 5676643 57899999999999999999999999999999999999999999999999999999999
No 37
>PF01077 NIR_SIR: Nitrite and sulphite reductase 4Fe-4S domain; InterPro: IPR006067 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP) (IPR005117 from INTERPRO), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a siroheme through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. In the E. coli SiR-HP enzyme (1.8.1.2 from EC), the iron is bound to cysteine residues at positions 433, 439, 478 and 482, the latter also forming the siroheme ligand.; GO: 0016491 oxidoreductase activity, 0020037 heme binding, 0051536 iron-sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 1ZJ8_B 1ZJ9_A 2AKJ_A 3VKT_A 3VKR_A 3VKS_A 3B0M_A 3B0N_A 3VKP_A 3B0J_A ....
Probab=99.60 E-value=8.5e-16 Score=144.80 Aligned_cols=79 Identities=28% Similarity=0.632 Sum_probs=67.9
Q ss_pred CCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeecCC----c
Q 008202 492 PLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPN----S 567 (574)
Q Consensus 492 ~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~~g----~ 567 (574)
+.+|++++|||+.+|++++.||..++..|.+++.+.+....+| .+++|+||||||+|++|+++||||+|.... .
T Consensus 3 ~~vrnv~aC~g~~~C~~a~~dt~~la~~l~~~~~~~~~~~~lp--~k~kI~isGCpn~C~~~~i~DIG~~g~~~~~~~~g 80 (157)
T PF01077_consen 3 DTVRNVTACPGSGFCPLALIDTKPLARELEDYLEERFEDPNLP--RKFKIAISGCPNSCARPQINDIGFIGVKKPNGEEG 80 (157)
T ss_dssp SSBHHEEESTGGGTBTT-SSBHHHHHHHHHHHTHHHHHCSCSS--S-BEEEEESSTTSTTSGGGSSEEEEEEEESTCEEE
T ss_pred CCCcccccCCChhhCchHHhCHHHHhhHhhhcccccccccccc--cccccceeecccccccccccccccceeeeccccce
Confidence 4568999999999999999999999998888888877766664 789999999999999999999999997542 6
Q ss_pred eEEEE
Q 008202 568 YQVFQ 572 (574)
Q Consensus 568 Y~l~l 572 (574)
|+||+
T Consensus 81 ~~v~v 85 (157)
T PF01077_consen 81 FDVYV 85 (157)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 99987
No 38
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=99.45 E-value=1.4e-13 Score=111.89 Aligned_cols=66 Identities=32% Similarity=0.454 Sum_probs=60.4
Q ss_pred eeecC--CcEEEEEEeCCCCcCHHHHHHHHHHHHHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHHC
Q 008202 417 HEQGD--GGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQA 482 (574)
Q Consensus 417 ~~q~d--G~~~v~v~vp~Grl~~~~l~~La~la~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~ 482 (574)
|+|+| |.|++++++|+|++++++++.|+++|++||. .||||++|||+|++|+++++++|.+.|+++
T Consensus 1 ~~qk~~~g~~~v~~~~~~G~i~~~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L~~~ 69 (69)
T PF03460_consen 1 HPQKDGDGFYMVRIRIPGGRISAEQLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIFEELKEA 69 (69)
T ss_dssp EECTTSTTEEEEEEB-GGGEEEHHHHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHHHHT
T ss_pred CCCCcCCeEEEEEEeCCCEEECHHHHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHHHcC
Confidence 57777 4489999999999999999999999999996 799999999999999999999999999874
No 39
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=98.94 E-value=2.6e-08 Score=103.59 Aligned_cols=129 Identities=20% Similarity=0.356 Sum_probs=92.7
Q ss_pred ccccCCeeeecCCcEEEEEEeCCCCcCHHHHHHHHHHHHH-hCCeEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCC
Q 008202 410 FKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEK-YNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPR 488 (574)
Q Consensus 410 ~~~~~G~~~q~dG~~~v~v~vp~Grl~~~~l~~La~la~~-yg~~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~ 488 (574)
.+-|+|+.+.+.+ ..|.+.+.- .|.-|..+ -|..||++=.++ +.+++..-++.|+.+||....
T Consensus 202 yPLHlGvTEAG~~--------~~G~iKSa~--gig~LL~~GIGDTiRVSLt~~------P~~EV~va~~IL~slglr~~g 265 (360)
T PRK00366 202 YPLHLGVTEAGMG--------FKGTVKSAA--GLGALLQEGIGDTIRVSLTAD------PVEEVKVGQEILQSLGLRSRG 265 (360)
T ss_pred CCceecccCCCCC--------CCceehhHH--HHHHHHHhcCCCeEEEeCCCC------CHHHHHHHHHHHHHcCCccCC
Confidence 3458898887754 467776542 34444433 345688763332 467788888999999997532
Q ss_pred CCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecC-CCcCCCCCcccEEEEeecCCc
Q 008202 489 YVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGC-PNGCARPYMAELGLVGDGPNS 567 (574)
Q Consensus 489 ~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGC-pn~Ca~~~~aDIGlvG~~~g~ 567 (574)
.++++||| |+....|+..++ .++++.+.... .+++|+|+|| +|+|+.+..+|||+.|. .+.
T Consensus 266 ------~~IisCPg---CgR~~~D~~~la----~~vee~~~~~~----~PlkIAVmGC~VNgpGEa~~aDIGIaG~-~~~ 327 (360)
T PRK00366 266 ------PEVISCPT---CGRTEFDVIQEL----AEVEQRLEHIK----MPLKVAVMGCVVNGPGEAKEADIGIAGG-NPK 327 (360)
T ss_pred ------CeEEECCC---CCCCcccHHHHH----HHHHHHhcCCC----CCcEEEEeCCCCCCCCchhhCcEeEecC-CCc
Confidence 46899987 999999998765 45555555433 3499999999 59999999999999996 455
Q ss_pred eEEEE
Q 008202 568 YQVFQ 572 (574)
Q Consensus 568 Y~l~l 572 (574)
|.||.
T Consensus 328 ~~vf~ 332 (360)
T PRK00366 328 GPVFV 332 (360)
T ss_pred eEEEE
Confidence 77764
No 40
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=98.76 E-value=4.9e-08 Score=101.61 Aligned_cols=111 Identities=18% Similarity=0.231 Sum_probs=85.8
Q ss_pred CcCCHHHHHHHHHHHcCCCCCCCCCCCcceecCCCCCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChh
Q 008202 173 LKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPE 252 (574)
Q Consensus 173 ~~~~l~~i~~~L~~~~g~t~~a~gd~~RNV~acp~~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~ 252 (574)
+.+.++-.++-| +++|+-.. -++|++||+ |.....|+..++.++.+.|..
T Consensus 245 P~~EV~va~~IL-~slglr~~-----g~~IisCPg--CgR~~~D~~~la~~vee~~~~---------------------- 294 (360)
T PRK00366 245 PVEEVKVGQEIL-QSLGLRSR-----GPEVISCPT--CGRTEFDVIQELAEVEQRLEH---------------------- 294 (360)
T ss_pred CHHHHHHHHHHH-HHcCCccC-----CCeEEECCC--CCCCcccHHHHHHHHHHHhcC----------------------
Confidence 355565555555 78875422 289999996 999999999999999887631
Q ss_pred hhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcC-CCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCc
Q 008202 253 VVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVP-TDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRL 331 (574)
Q Consensus 253 ~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc-~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~ 331 (574)
..+| |||+|+|| +|+|+.+..+|||+.+ ...+|.||.||..
T Consensus 295 ------------------------~~~P--lkIAVmGC~VNgpGEa~~aDIGIaG------~~~~~~vf~~Gk~------ 336 (360)
T PRK00366 295 ------------------------IKMP--LKVAVMGCVVNGPGEAKEADIGIAG------GNPKGPVFVDGEK------ 336 (360)
T ss_pred ------------------------CCCC--cEEEEeCCCCCCCCchhhCcEeEec------CCCceEEEECCEE------
Confidence 2456 99999999 5999999999999985 2247999999853
Q ss_pred cccccccccccCCCChhHHHHHHHHHHHHH
Q 008202 332 ETTFPRLGEQLGYVPKEDILYAVKAIVVTQ 361 (574)
Q Consensus 332 ~~t~p~la~~l~~v~~eev~~~~~ai~~~~ 361 (574)
+..|+.+++++.+...++.|
T Consensus 337 ----------v~kv~~~~~~~~l~~~i~~~ 356 (360)
T PRK00366 337 ----------IKTLPEENIVEELEAEIEAY 356 (360)
T ss_pred ----------eeeeChHhHHHHHHHHHHHH
Confidence 33589999988887777655
No 41
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=97.32 E-value=0.0082 Score=62.76 Aligned_cols=129 Identities=22% Similarity=0.389 Sum_probs=87.9
Q ss_pred ccccCCeeeecCCcEEEEEEeCCCCcCHHHHHHHHHHHHH-hCCeEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCC
Q 008202 410 FKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEK-YNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPR 488 (574)
Q Consensus 410 ~~~~~G~~~q~dG~~~v~v~vp~Grl~~~~l~~La~la~~-yg~~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~ 488 (574)
.+-|+|+.+.+.+ ..|.+.+.- .|.-|..+ -|..||++=. .-+.+++..-.+.|+.+||....
T Consensus 193 yPLHlGVTEAG~~--------~~G~IKSai--gig~LL~~GIGDTIRVSLT------~dP~~EV~va~~IL~slglr~~g 256 (346)
T TIGR00612 193 YPLHLGVTEAGMG--------VKGIVKSSA--GIGILLARGIGDTIRVSLT------DDPTHEVPVAFEILQSLGLRARG 256 (346)
T ss_pred CCceeccccCCCC--------CCchhHHHH--HHHHHHhhCCCCeEEEECC------CCcHHHHHHHHHHHHHcCCCcCC
Confidence 3458898887754 467776542 34444433 3446776633 33467778888999999997532
Q ss_pred CCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecC-CCcCCCCCcccEEEEeecCCc
Q 008202 489 YVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGC-PNGCARPYMAELGLVGDGPNS 567 (574)
Q Consensus 489 ~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGC-pn~Ca~~~~aDIGlvG~~~g~ 567 (574)
-+++||| +|+.-..|.... ++++++.+.... .+++|+|=|| -||=+....||||+.|.++|.
T Consensus 257 ------~~iiSCP---tCGR~~~dl~~~----~~~ve~~l~~~~----~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~ 319 (346)
T TIGR00612 257 ------VEIVACP---SCGRTGFDVEKV----VRRVQEALFHLK----TPLKVAVMGCVVNGPGEAKHADIGISGGGTGS 319 (346)
T ss_pred ------CeEEECC---CCCCcCCCHHHH----HHHHHHHHhcCC----CCCEEEEECceecCCchhhccCeeeecCCCCc
Confidence 2589996 777766665554 456666555432 4699999999 599999999999999964665
Q ss_pred eEEE
Q 008202 568 YQVF 571 (574)
Q Consensus 568 Y~l~ 571 (574)
--||
T Consensus 320 ~~lF 323 (346)
T TIGR00612 320 AILF 323 (346)
T ss_pred eEEE
Confidence 4444
No 42
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=96.48 E-value=0.011 Score=62.43 Aligned_cols=121 Identities=19% Similarity=0.291 Sum_probs=77.5
Q ss_pred eEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcCCCCCCCCCCCcceecCCCCCCchhhhhHHHHHHHHHHHhCCCcccccc
Q 008202 158 TLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYD 237 (574)
Q Consensus 158 ~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g~t~~a~gd~~RNV~acp~~~~~~~~~d~~~la~~l~~~l~p~~~ay~e 237 (574)
+||++ |.+=+.+.+.-.++-| +++++-... =++++|| .|..-..|..+++.++.+++.
T Consensus 236 TIRVS------Lt~~p~~EV~va~~IL-~al~lR~~g-----~~~ISCP--tCGRt~~Dl~~~~~~ie~~l~-------- 293 (359)
T PF04551_consen 236 TIRVS------LTGDPVEEVKVAFEIL-QALGLRKRG-----PEIISCP--TCGRTEFDLQELVAEIEERLK-------- 293 (359)
T ss_dssp EEEE-------ECSSCCCHHHHHHHHH-HHTTSS-SS------EEEE------TT--SHHHHHHHHHHHHCC--------
T ss_pred EEEEE------CCCCchHHHHHHHHHH-HHhCcCcCC-----ceeeeCC--CCCCccchHHHHHHHHHHHHh--------
Confidence 66664 3344455666666655 888854322 3799998 688888999999999987752
Q ss_pred eeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCCC-CCcccccCCEEEEEEecCCCccee
Q 008202 238 MWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTD-NSVDILTNDIGVVVVSDENGEPQG 316 (574)
Q Consensus 238 ~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~~-~c~~~~~~DIG~va~~~~~g~~~G 316 (574)
.|+..+||+|=||.= +-+...-+|+|+++... | .
T Consensus 294 ----------------------------------------~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~--g---~ 328 (359)
T PF04551_consen 294 ----------------------------------------HLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGK--G---K 328 (359)
T ss_dssp ----------------------------------------CHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-T--T---C
T ss_pred ----------------------------------------cCCCCceEEEEeeeecCCchhhhCceeeecCCC--C---e
Confidence 366788999999954 45567889999995433 2 3
Q ss_pred EEEEEccCCCCcCCccccccccccccCC-CChhHHHHHHHHHHHHH
Q 008202 317 FNLYVGGGMGRTHRLETTFPRLGEQLGY-VPKEDILYAVKAIVVTQ 361 (574)
Q Consensus 317 f~v~vGGg~G~~~~~~~t~p~la~~l~~-v~~eev~~~~~ai~~~~ 361 (574)
..+|.+|.. +.. +++|++++.+..+++-|
T Consensus 329 ~~lf~~g~~----------------v~k~~~ee~~vd~L~~~I~~~ 358 (359)
T PF04551_consen 329 GILFKKGEV----------------VKKVIPEEEIVDELIELIEEH 358 (359)
T ss_dssp EEEECTTEE----------------EEEE-CSTCHHHHHHHHHHHH
T ss_pred EEEEECCEE----------------EEecCCHHHHHHHHHHHHHhh
Confidence 688988752 333 49999988888877644
No 43
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=96.44 E-value=0.0057 Score=64.43 Aligned_cols=98 Identities=19% Similarity=0.312 Sum_probs=64.7
Q ss_pred CCeEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHh
Q 008202 451 NLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEK 530 (574)
Q Consensus 451 g~~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~ 530 (574)
|..||++-. +=+.+++..-...|+..|+.... ..++||| +|+.-..|.+.. ++++++.+..
T Consensus 234 GDTIRVSLt------~~p~~EV~va~~IL~al~lR~~g------~~~ISCP---tCGRt~~Dl~~~----~~~ie~~l~~ 294 (359)
T PF04551_consen 234 GDTIRVSLT------GDPVEEVKVAFEILQALGLRKRG------PEIISCP---TCGRTEFDLQEL----VAEIEERLKH 294 (359)
T ss_dssp -SEEEE-EC------SSCCCHHHHHHHHHHHTTSS-SS-------EEEE-------TT--SHHHHH----HHHHHHHCCC
T ss_pred CCEEEEECC------CCchHHHHHHHHHHHHhCcCcCC------ceeeeCC---CCCCccchHHHH----HHHHHHHHhc
Confidence 446887633 44566788888999999997532 2579996 888888776654 5566666543
Q ss_pred cCCCCCCceEEEEecC-CCcCCCCCcccEEEEeecCCceEEE
Q 008202 531 VGLKYNESVVIRVTGC-PNGCARPYMAELGLVGDGPNSYQVF 571 (574)
Q Consensus 531 ~gl~~~~~ikI~iSGC-pn~Ca~~~~aDIGlvG~~~g~Y~l~ 571 (574)
+ +.+++|+|=|| -||=+....||||+.|.++|+-.||
T Consensus 295 l----~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf 332 (359)
T PF04551_consen 295 L----KKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILF 332 (359)
T ss_dssp H----HCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEE
T ss_pred C----CCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEE
Confidence 3 24799999999 5999999999999997788887776
No 44
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=96.04 E-value=0.015 Score=66.02 Aligned_cols=81 Identities=22% Similarity=0.412 Sum_probs=61.8
Q ss_pred HHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecC-CCcCCC
Q 008202 474 PITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGC-PNGCAR 552 (574)
Q Consensus 474 ~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGC-pn~Ca~ 552 (574)
--+..|+..|+.... ...+||| .|+..+.+- +++..++.+...+ ++ .++|+|=|| -||=+.
T Consensus 617 ~~~~ILQ~~~~R~~k------te~isCP---gCGRT~~dl----q~~~~~I~~~~~h--l~---GvkiavMGCIVNGPGE 678 (733)
T PLN02925 617 TSFGLLQGCRMRNTK------TEYVSCP---SCGRTLFDL----QEVSAEIREKTSH--LP---GVSIAIMGCIVNGPGE 678 (733)
T ss_pred HHHHHHHHhCccccC------CeEEECC---CCCCccccH----HHHHHHHHHHhhc--CC---CceEEEEeeeecCCcc
Confidence 345678888876522 2478997 699888874 3445666665433 33 489999999 699999
Q ss_pred CCcccEEEEeecCCceEEEE
Q 008202 553 PYMAELGLVGDGPNSYQVFQ 572 (574)
Q Consensus 553 ~~~aDIGlvG~~~g~Y~l~l 572 (574)
...||+|+||.++|+-+||+
T Consensus 679 madAd~GyVG~gpgKI~LYv 698 (733)
T PLN02925 679 MADADFGYVGGAPGKIDLYV 698 (733)
T ss_pred ccccccceeccCCCeeEEEe
Confidence 99999999999999999996
No 45
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=95.99 E-value=0.032 Score=58.24 Aligned_cols=128 Identities=23% Similarity=0.381 Sum_probs=85.5
Q ss_pred cccCCeeeecCCcEEEEEEeCCCCcCHHHHHHHHHHHHH-hCCeEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCC
Q 008202 411 KSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEK-YNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRY 489 (574)
Q Consensus 411 ~~~~G~~~q~dG~~~v~v~vp~Grl~~~~l~~La~la~~-yg~~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~ 489 (574)
+-|+|+.+.+.+. .|.+.+. -+|.-|..+ -|..||++=. .=+.+++.--.+.|+.+|+....
T Consensus 196 PLHLGvTEAG~~~--------~G~VkSa--~alg~LL~eGIGDTIRVSLt------~~P~~EV~V~~eILqslglR~~~- 258 (361)
T COG0821 196 PLHLGVTEAGMGF--------KGIVKSA--AALGALLSEGIGDTIRVSLT------ADPVEEVKVAQEILQSLGLRSRG- 258 (361)
T ss_pred CcccceecccCcc--------cceehHH--HHHHHHHHhcCCceEEEecC------CCchhhhHHHHHHHHHhCccccC-
Confidence 4588988877653 4555443 234444433 3555765422 22366677777899999997532
Q ss_pred CCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecC-CCcCCCCCcccEEEEeecCCce
Q 008202 490 VDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGC-PNGCARPYMAELGLVGDGPNSY 568 (574)
Q Consensus 490 ~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGC-pn~Ca~~~~aDIGlvG~~~g~Y 568 (574)
-+++||| +|+....|....+ .++++.+.+.. .+++|.|-|| -||=+....||||+.|.+.+.-
T Consensus 259 -----v~~iaCP---~CGR~~~dv~~~~----~~~~~~~~~~~----~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~ 322 (361)
T COG0821 259 -----VEVIACP---TCGRTEFDVIQTL----NEVEQRLEHLK----TPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSG 322 (361)
T ss_pred -----ceEEECC---CCCceeehHHHHH----HHHHHHhhccC----CCceEEEEEeEecCCcchhccceeeecCCCCee
Confidence 3589996 8999888876654 45555554433 3599999999 6999999999999999755543
Q ss_pred EEE
Q 008202 569 QVF 571 (574)
Q Consensus 569 ~l~ 571 (574)
.+|
T Consensus 323 ~~f 325 (361)
T COG0821 323 PVF 325 (361)
T ss_pred EEE
Confidence 343
No 46
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=95.82 E-value=0.057 Score=56.63 Aligned_cols=118 Identities=17% Similarity=0.203 Sum_probs=79.5
Q ss_pred CeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcCCCCCCCCCCCcceecCCCCCCchhhhhHHHHHHHHHHHhCCCccccc
Q 008202 157 GTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYY 236 (574)
Q Consensus 157 g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g~t~~a~gd~~RNV~acp~~~~~~~~~d~~~la~~l~~~l~p~~~ay~ 236 (574)
.|||++= .+=+.+.++-.++-| +++|+-... =++++|| .|..-..|..+++.++.+.|.
T Consensus 226 DTIRVSL------T~dP~~EV~va~~IL-~slglr~~g-----~~iiSCP--tCGR~~~dl~~~~~~ve~~l~------- 284 (346)
T TIGR00612 226 DTIRVSL------TDDPTHEVPVAFEIL-QSLGLRARG-----VEIVACP--SCGRTGFDVEKVVRRVQEALF------- 284 (346)
T ss_pred CeEEEEC------CCCcHHHHHHHHHHH-HHcCCCcCC-----CeEEECC--CCCCcCCCHHHHHHHHHHHHh-------
Confidence 3666642 233355666666666 888754322 4899998 687777888899999877753
Q ss_pred ceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCC-CCCcccccCCEEEEEEecCCCcce
Q 008202 237 DMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPT-DNSVDILTNDIGVVVVSDENGEPQ 315 (574)
Q Consensus 237 e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~-~~c~~~~~~DIG~va~~~~~g~~~ 315 (574)
.++..+||+|=||. |+-..+.-+|||+.+.. . .
T Consensus 285 -----------------------------------------~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg----~-g 318 (346)
T TIGR00612 285 -----------------------------------------HLKTPLKVAVMGCVVNGPGEAKHADIGISGGG----T-G 318 (346)
T ss_pred -----------------------------------------cCCCCCEEEEECceecCCchhhccCeeeecCC----C-C
Confidence 24445899999995 45667788999998631 1 2
Q ss_pred eEEEEEccCCCCcCCccccccccccccCCCChhHHHHHHHHH
Q 008202 316 GFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAI 357 (574)
Q Consensus 316 Gf~v~vGGg~G~~~~~~~t~p~la~~l~~v~~eev~~~~~ai 357 (574)
...||..|. .+..|+.+++++.+...
T Consensus 319 ~~~lF~~G~----------------~~~kv~~~~~~~~l~~~ 344 (346)
T TIGR00612 319 SAILFKRGK----------------PKAKQPETDMADELIRL 344 (346)
T ss_pred ceEEEECCE----------------EeEecCHHHHHHHHHHh
Confidence 356777764 23458999888766554
No 47
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=95.44 E-value=0.15 Score=53.33 Aligned_cols=116 Identities=21% Similarity=0.255 Sum_probs=78.5
Q ss_pred cCCHHHHHHHHHHHcCCCCCCCCCCCcceecCCCCCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhh
Q 008202 174 KKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEV 253 (574)
Q Consensus 174 ~~~l~~i~~~L~~~~g~t~~a~gd~~RNV~acp~~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~ 253 (574)
.+.++-..+-| +.+|+-... =|+++|| .|.....|....+.++.+.+.
T Consensus 239 ~~EV~V~~eIL-qslglR~~~-----v~~iaCP--~CGR~~~dv~~~~~~~~~~~~------------------------ 286 (361)
T COG0821 239 VEEVKVAQEIL-QSLGLRSRG-----VEVIACP--TCGRTEFDVIQTLNEVEQRLE------------------------ 286 (361)
T ss_pred hhhhHHHHHHH-HHhCccccC-----ceEEECC--CCCceeehHHHHHHHHHHHhh------------------------
Confidence 34444333434 777753222 4899998 698888888888888876642
Q ss_pred hhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcC-CCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCcc
Q 008202 254 VKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVP-TDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLE 332 (574)
Q Consensus 254 ~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc-~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~ 332 (574)
.++-.+||+|-|| -|+-+...-+|||+.+... ..-.+|++|..-
T Consensus 287 ------------------------~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~-----~~~~~f~~g~~~------ 331 (361)
T COG0821 287 ------------------------HLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGK-----GSGPVFVKGEII------ 331 (361)
T ss_pred ------------------------ccCCCceEEEEEeEecCCcchhccceeeecCCC-----CeeEEEECCeEE------
Confidence 2334489999999 4556677889999997432 234678887521
Q ss_pred ccccccccccCCCChhHHHHHHHHHHHHHHHhCC
Q 008202 333 TTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGR 366 (574)
Q Consensus 333 ~t~p~la~~l~~v~~eev~~~~~ai~~~~rd~g~ 366 (574)
-.++.+++++-+.++++-|-+...
T Consensus 332 ----------~~~~~~~~~eel~~~i~~~~~~~~ 355 (361)
T COG0821 332 ----------KKLPEEDIVEELEALIEAYAEERD 355 (361)
T ss_pred ----------EecChhhHHHHHHHHHHHHHHHhh
Confidence 237888888888888877766543
No 48
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=94.82 E-value=0.74 Score=52.79 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=75.8
Q ss_pred cCCCcCCHHHHHHHHHHHcCCCCCCCCCCCcceecCCCCCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCC
Q 008202 170 HGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAE 249 (574)
Q Consensus 170 ~gI~~~~l~~i~~~L~~~~g~t~~a~gd~~RNV~acp~~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~ 249 (574)
.|.+.+....+-..|.+++++-.. .-.+++|| .|.....|-++++.+|.++.
T Consensus 607 ~~~~~~~~~~~~~~ILQ~~~~R~~-----kte~isCP--gCGRT~~dlq~~~~~I~~~~--------------------- 658 (733)
T PLN02925 607 PDQDFDFLRNTSFGLLQGCRMRNT-----KTEYVSCP--SCGRTLFDLQEVSAEIREKT--------------------- 658 (733)
T ss_pred CCCCHHHHHHHHHHHHHHhCcccc-----CCeEEECC--CCCCccccHHHHHHHHHHHh---------------------
Confidence 344444444545555466663222 13688998 68888888889999887652
Q ss_pred ChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCC-CCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCc
Q 008202 250 PPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPT-DNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRT 328 (574)
Q Consensus 250 ~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~-~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~ 328 (574)
..||. .||+|=||. |+-+..--+|+|+|+... ..-++|+|--
T Consensus 659 ---------------------------~hl~G-vkiavMGCIVNGPGEmadAd~GyVG~gp-----gKI~LYvgKe---- 701 (733)
T PLN02925 659 ---------------------------SHLPG-VSIAIMGCIVNGPGEMADADFGYVGGAP-----GKIDLYVGKE---- 701 (733)
T ss_pred ---------------------------hcCCC-ceEEEEeeeecCCccccccccceeccCC-----CeeEEEecce----
Confidence 12553 599999995 445556678999998653 3579999842
Q ss_pred CCccccccccccccC-CCChhHHHHHHHHHHHHHHHhCC
Q 008202 329 HRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGR 366 (574)
Q Consensus 329 ~~~~~t~p~la~~l~-~v~~eev~~~~~ai~~~~rd~g~ 366 (574)
.+. .||.+++++- +++.-+++|+
T Consensus 702 ------------cV~~nIpeeeAvd~---LIeLIKe~G~ 725 (733)
T PLN02925 702 ------------VVKRGIAMEEATDA---LIQLIKDHGR 725 (733)
T ss_pred ------------ehhcCCCHHHHHHH---HHHHHHHcCc
Confidence 122 4898887554 4555556665
No 49
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=94.76 E-value=0.063 Score=59.87 Aligned_cols=79 Identities=27% Similarity=0.437 Sum_probs=59.0
Q ss_pred HHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecC-CCcCCCCC
Q 008202 476 TTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGC-PNGCARPY 554 (574)
Q Consensus 476 ~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGC-pn~Ca~~~ 554 (574)
...|+..++.... ...+||| .|+..+.|-+.. ..++.+.... ++ .+||+|-|| -||=+.-.
T Consensus 495 f~ILQaaR~R~sK------te~isCP---~CgRtlfdlq~t----~~~i~~~t~H--l~---g~kIaiMGCiVNGpGEma 556 (606)
T PRK00694 495 FGTLQSAGVRLVK------TEYISCP---GCGRTLFDLLEV----TQRIRERTQH--LP---GLKIAVMGCIVNGPGEMA 556 (606)
T ss_pred HHHHHHhcccccc------ceEEECC---CCCceeehHHHH----HHHHHHHhcc--CC---CceEEEEEeEecCCcccc
Confidence 4566666655422 2468997 699888875443 4566655433 32 599999999 69999999
Q ss_pred cccEEEEeecCCceEEEE
Q 008202 555 MAELGLVGDGPNSYQVFQ 572 (574)
Q Consensus 555 ~aDIGlvG~~~g~Y~l~l 572 (574)
-||+|++|.++|+-+||+
T Consensus 557 dAd~GyVG~gpgkI~LY~ 574 (606)
T PRK00694 557 DADFGFVGSKTGMIDLYV 574 (606)
T ss_pred ccccceecCCCCeEEEEe
Confidence 999999999999999996
No 50
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=94.13 E-value=0.047 Score=63.16 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=42.4
Q ss_pred HHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcCCC
Q 008202 145 LTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGST 191 (574)
Q Consensus 145 ~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g~t 191 (574)
-.|+++|++||++.|++|+||.+.|.||+.++++++.++| .+.|++
T Consensus 278 ~~I~eiA~kyG~g~I~tt~r~~~elp~i~~~die~i~~~L-~~~glp 323 (731)
T cd01916 278 ADILEEAQKLGIPVIATNDKIMLGLPDVTDEDPDKIVEDL-VSGKIP 323 (731)
T ss_pred ccHHHHHHHhCCCEEEechhhhcCCCCCccccHHHHHHHH-HhCCCC
Confidence 3689999999999999999999999999999999999999 777654
No 51
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=93.08 E-value=0.13 Score=57.84 Aligned_cols=79 Identities=24% Similarity=0.453 Sum_probs=58.7
Q ss_pred HHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecC-CCcCCCCC
Q 008202 476 TTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGC-PNGCARPY 554 (574)
Q Consensus 476 ~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGC-pn~Ca~~~ 554 (574)
...|+...+.... ..-+||| .|+..+.|-+.. ..+|.+...+ |+ .+||+|=|| -||=+.-.
T Consensus 503 f~ILQa~r~R~sK------TEyISCP---sCGRTLfDLq~t----ta~Ik~~t~H--Lk---GlkI~IMGCIVNGPGEMA 564 (611)
T PRK02048 503 FGILQAGRLRTSK------TEYISCP---GCGRTLYDLQST----IARIKEATSH--LK---GLKIGIMGCIVNGPGEMA 564 (611)
T ss_pred HHHHHHhcccccc------ceEEECC---CCCcchhhHHHH----HHHHHHHhCC--CC---CceEEEEEeEecCCchhh
Confidence 3556665554321 2358996 699999886554 4556655433 32 599999999 79999999
Q ss_pred cccEEEEeecCCceEEEE
Q 008202 555 MAELGLVGDGPNSYQVFQ 572 (574)
Q Consensus 555 ~aDIGlvG~~~g~Y~l~l 572 (574)
-||.|.||.++|+-+||+
T Consensus 565 DADfGYVG~gpgkI~LY~ 582 (611)
T PRK02048 565 DADYGYVGAGRGKISLYK 582 (611)
T ss_pred hcccceecCCCCeEEEEe
Confidence 999999999999999996
No 52
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=91.90 E-value=1.3 Score=49.85 Aligned_cols=92 Identities=21% Similarity=0.246 Sum_probs=64.1
Q ss_pred cceecCCCCCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCC
Q 008202 200 RNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFL 279 (574)
Q Consensus 200 RNV~acp~~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~L 279 (574)
-+.++|| .|...++|-++.+.+|.+.. ..|
T Consensus 508 te~isCP--~CgRtlfdlq~t~~~i~~~t------------------------------------------------~Hl 537 (606)
T PRK00694 508 TEYISCP--GCGRTLFDLLEVTQRIRERT------------------------------------------------QHL 537 (606)
T ss_pred ceEEECC--CCCceeehHHHHHHHHHHHh------------------------------------------------ccC
Confidence 3688998 68888888888888876542 135
Q ss_pred CCceEEEEEcCC-CCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHHHHHH
Q 008202 280 PRKFKVAVTVPT-DNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAI 357 (574)
Q Consensus 280 PrKfkI~isgc~-~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~~~ai 357 (574)
| -.||+|-||- |+-+..--+|+|+|+... ..-++|+|=- .+. .||.+++++ .+
T Consensus 538 ~-g~kIaiMGCiVNGpGEmadAd~GyVG~gp-----gkI~LY~gKe----------------cV~~nIPee~Avd---~L 592 (606)
T PRK00694 538 P-GLKIAVMGCIVNGPGEMADADFGFVGSKT-----GMIDLYVKHT----------------CVKAHIPMENAEE---EL 592 (606)
T ss_pred C-CceEEEEEeEecCCccccccccceecCCC-----CeEEEEecce----------------ehhcCCCHHHHHH---HH
Confidence 5 4899999994 445556678999998543 3579999832 122 489887755 45
Q ss_pred HHHHHHhCC
Q 008202 358 VVTQRENGR 366 (574)
Q Consensus 358 ~~~~rd~g~ 366 (574)
++.-+++|.
T Consensus 593 I~LIke~G~ 601 (606)
T PRK00694 593 VQLLKEHGV 601 (606)
T ss_pred HHHHHHcCC
Confidence 555566665
No 53
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=89.97 E-value=1.1 Score=50.52 Aligned_cols=91 Identities=16% Similarity=0.201 Sum_probs=62.8
Q ss_pred ceecCCCCCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCC
Q 008202 201 NVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLP 280 (574)
Q Consensus 201 NV~acp~~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LP 280 (574)
.-++|| .|...++|-++...+|.++. ..||
T Consensus 517 EyISCP--sCGRTLfDLq~tta~Ik~~t------------------------------------------------~HLk 546 (611)
T PRK02048 517 EYISCP--GCGRTLYDLQSTIARIKEAT------------------------------------------------SHLK 546 (611)
T ss_pred eEEECC--CCCcchhhHHHHHHHHHHHh------------------------------------------------CCCC
Confidence 357887 69999999999888886542 2365
Q ss_pred CceEEEEEcCCC-CCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHHHHHHH
Q 008202 281 RKFKVAVTVPTD-NSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIV 358 (574)
Q Consensus 281 rKfkI~isgc~~-~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~~~ai~ 358 (574)
. .||||=||-= +-+.---+|.|.|+... ..-++|+|-- .+. .||.|++++- ++
T Consensus 547 G-lkI~IMGCIVNGPGEMADADfGYVG~gp-----gkI~LY~gke----------------~V~~nIp~e~Avd~---Li 601 (611)
T PRK02048 547 G-LKIGIMGCIVNGPGEMADADYGYVGAGR-----GKISLYKQKE----------------CVEKNIPEEEAVER---LI 601 (611)
T ss_pred C-ceEEEEEeEecCCchhhhcccceecCCC-----CeEEEEeccE----------------EEecCCCHHHHHHH---HH
Confidence 5 8999999954 44445568999997543 3478999842 122 4898887554 45
Q ss_pred HHHHHhCC
Q 008202 359 VTQRENGR 366 (574)
Q Consensus 359 ~~~rd~g~ 366 (574)
+.-+++|+
T Consensus 602 ~LIk~~g~ 609 (611)
T PRK02048 602 ELIKANGD 609 (611)
T ss_pred HHHHHcCC
Confidence 55556664
No 54
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=87.00 E-value=0.69 Score=53.97 Aligned_cols=43 Identities=14% Similarity=0.232 Sum_probs=40.1
Q ss_pred HHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcC
Q 008202 146 TMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG 189 (574)
Q Consensus 146 ~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g 189 (574)
.|.++|++||.+.|.+|+||.+.|.||+.++++++.++| .+.+
T Consensus 316 ~L~eiA~~ygt~lItTs~k~~~eLPdit~~die~Ii~~L-~~~~ 358 (781)
T PRK00941 316 DILEEAKKLGIPVIATNDKICLGLPDRTDEDVDEIIEDL-VSGK 358 (781)
T ss_pred cHHHHHHHhCCCEEEecccccccCCCCCccCHHHHHHHH-HhCC
Confidence 578999999999999999999999999999999999999 6555
No 55
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=78.69 E-value=2.2 Score=49.85 Aligned_cols=46 Identities=13% Similarity=0.116 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHHCCCC
Q 008202 440 KKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLL 485 (574)
Q Consensus 440 l~~La~la~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~ 485 (574)
+-.|+++|++||. .|.+|++|.+.|++|+.++++++.+.|.+.|+.
T Consensus 277 ~~~I~eiA~kyG~g~I~tt~r~~~elp~i~~~die~i~~~L~~~glp 323 (731)
T cd01916 277 RADILEEAQKLGIPVIATNDKIMLGLPDVTDEDPDKIVEDLVSGKIP 323 (731)
T ss_pred cccHHHHHHHhCCCEEEechhhhcCCCCCccccHHHHHHHHHhCCCC
Confidence 3458999999998 599999999999999999999999999988854
No 56
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=57.22 E-value=13 Score=43.75 Aligned_cols=44 Identities=14% Similarity=0.067 Sum_probs=40.4
Q ss_pred HHHHHHHHHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHHCCC
Q 008202 441 KTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGL 484 (574)
Q Consensus 441 ~~La~la~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl 484 (574)
-.|.++|++||. -|.+|+.+.+-|++|+.++++++.+.|.+.|+
T Consensus 315 p~L~eiA~~ygt~lItTs~k~~~eLPdit~~die~Ii~~L~~~~~ 359 (781)
T PRK00941 315 TDILEEAKKLGIPVIATNDKICLGLPDRTDEDVDEIIEDLVSGKI 359 (781)
T ss_pred ccHHHHHHHhCCCEEEecccccccCCCCCccCHHHHHHHHHhCCC
Confidence 358899999998 59999999999999999999999999999874
No 57
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=52.56 E-value=16 Score=33.19 Aligned_cols=64 Identities=16% Similarity=0.122 Sum_probs=41.4
Q ss_pred EEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccCCCChhHHHHHHHHHHHHHHH
Q 008202 284 KVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRE 363 (574)
Q Consensus 284 kI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~~v~~eev~~~~~ai~~~~rd 363 (574)
=++++|||.+|+.--++.-||.+- +.+.+- .++..+++|. -+++|++..++..|.+...-
T Consensus 70 IlalDGCp~~Catk~l~~AGv~~D---------~~l~it-----dlGikK~~~~------D~~~edv~kv~~~i~e~l~~ 129 (135)
T COG4273 70 ILALDGCPLRCATKCLAEAGVQAD---------VHLTIT-----DLGIKKTYPS------DCKDEDVEKVARTIKEALTI 129 (135)
T ss_pred eEEecCChHHHHHHHHHHhcccee---------EEEEeh-----hcccccCCCC------CCCHHHHHHHHHHHHHHhhh
Confidence 479999999999877666666541 222221 1112233332 58999999999999887655
Q ss_pred hCCC
Q 008202 364 NGRR 367 (574)
Q Consensus 364 ~g~R 367 (574)
.++|
T Consensus 130 ~~~~ 133 (135)
T COG4273 130 KLNR 133 (135)
T ss_pred cccc
Confidence 4443
No 58
>PRK07539 NADH dehydrogenase subunit E; Validated
Probab=47.23 E-value=88 Score=29.38 Aligned_cols=95 Identities=14% Similarity=0.145 Sum_probs=57.1
Q ss_pred CCCcCHHHHHHHHHHHHHhCCeEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchh
Q 008202 432 NGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAIT 511 (574)
Q Consensus 432 ~Grl~~~~l~~La~la~~yg~~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~ 511 (574)
.|.|+.+.+..+|+. .+++..++..+..--...-+.. .+ ...+.-|.|. .|...-
T Consensus 35 ~g~ip~~~~~~iA~~------------------l~v~~~~v~~v~tFY~~f~~~p---~g--k~~I~VC~g~-~C~~~G- 89 (154)
T PRK07539 35 RGWVPDEAIEAVADY------------------LGMPAIDVEEVATFYSMIFRQP---VG--RHVIQVCTST-PCWLRG- 89 (154)
T ss_pred hCCCCHHHHHHHHHH------------------hCcCHHHHHHHHHHHhhhCcCC---CC--CEEEEEcCCc-hHHHCC-
Confidence 366667766666664 2466666666665544332221 11 2357799987 576432
Q ss_pred HHHhhHHHHHHHHHHHHH-hcCC-CCCCceEEEEecCCCcCCCCCcc
Q 008202 512 EAERGIPDILKRIRAVFE-KVGL-KYNESVVIRVTGCPNGCARPYMA 556 (574)
Q Consensus 512 et~~~a~~l~~~l~~~l~-~~gl-~~~~~ikI~iSGCpn~Ca~~~~a 556 (574)
+.++.+.|++.+. +.|. ..+..+++.-++|--.|+..-.-
T Consensus 90 -----a~~l~~~l~~~L~i~~g~tt~dg~~~l~~~~ClG~C~~gPvv 131 (154)
T PRK07539 90 -----GEAILAALKKKLGIKPGETTADGRFTLLEVECLGACDNAPVV 131 (154)
T ss_pred -----HHHHHHHHHHHhCCCCCCcCCCCeEEEEEccccCccCCCCEE
Confidence 3445667776664 3343 22456889999999999876543
No 59
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.86 E-value=24 Score=31.04 Aligned_cols=38 Identities=32% Similarity=0.681 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCCCCCceEEEEecCCCcCCCCC-----cccEEEEe
Q 008202 523 RIRAVFEKVGLKYNESVVIRVTGCPNGCARPY-----MAELGLVG 562 (574)
Q Consensus 523 ~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~-----~aDIGlvG 562 (574)
+.-+.|.+.+|.. ..+.++.|+|| -|+.+. .++.+|+|
T Consensus 30 eagk~Ln~~~Ldy-V~ie~G~t~CP-~Cg~~~e~~fvva~~aLVg 72 (115)
T COG1885 30 EAGKRLNKPDLDY-VEIEVGSTSCP-KCGEPFESAFVVANTALVG 72 (115)
T ss_pred HHHHHhccCCCCe-EEEecccccCC-CCCCccceeEEEecceeEE
Confidence 3344454455554 35778889999 688885 56777777
No 60
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=38.18 E-value=1.5e+02 Score=28.05 Aligned_cols=93 Identities=13% Similarity=0.093 Sum_probs=56.2
Q ss_pred CCCcCHHHHHHHHHHHHHhCCeEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchh
Q 008202 432 NGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAIT 511 (574)
Q Consensus 432 ~Grl~~~~l~~La~la~~yg~~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~ 511 (574)
.|.|+.+.+..||+. .+|++.++..+..--...-+.. +-...+..|.|. .|...-
T Consensus 36 ~G~Ip~e~~~~iA~~------------------l~v~~~~V~~vatFY~~f~~~p-----~Gk~~I~VC~~~-~C~~~G- 90 (156)
T PRK05988 36 FGYVPEDAVPVIAEA------------------LNLSRAEVHGVITFYHDFRTHP-----PGRHVLKLCRAE-ACQAMG- 90 (156)
T ss_pred cCCCCHHHHHHHHHH------------------hCCCHHHHHHHHHHhhccCCCC-----CCCEEEEEeCCc-hhhcCC-
Confidence 366777777777764 2466666666654443222211 112347799987 687533
Q ss_pred HHHhhHHHHHHHHHHHHH-hcC-CCCCCceEEEEecCCCcCCCCC
Q 008202 512 EAERGIPDILKRIRAVFE-KVG-LKYNESVVIRVTGCPNGCARPY 554 (574)
Q Consensus 512 et~~~a~~l~~~l~~~l~-~~g-l~~~~~ikI~iSGCpn~Ca~~~ 554 (574)
+.++.+.+++.+. +.| ...+.+|++.-+.|--.|++.-
T Consensus 91 -----~~~ll~~l~~~Lgi~~gett~Dg~ftL~~~~ClG~C~~aP 130 (156)
T PRK05988 91 -----GDALAAHAKARLGIDFHQTTADGAVTLEPVYCLGLCACSP 130 (156)
T ss_pred -----HHHHHHHHHHHhCCCCCCcCCCCeEEEEeeeecCccCCCC
Confidence 3345667766552 111 2335679999999999998864
No 61
>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit. This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.
Probab=36.70 E-value=1.7e+02 Score=27.25 Aligned_cols=96 Identities=15% Similarity=0.239 Sum_probs=56.2
Q ss_pred CCCcCHHHHHHHHHHHHHhCCeEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchh
Q 008202 432 NGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAIT 511 (574)
Q Consensus 432 ~Grl~~~~l~~La~la~~yg~~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~ 511 (574)
.|.|+.+.+..+|+. .+++..++..+..--...-... .+ ...+..|.|. .|...-
T Consensus 29 ~G~i~~~~~~~iA~~------------------l~~~~~~v~~v~tFY~~f~~~p---~g--k~~I~VC~g~-~C~~~G- 83 (148)
T TIGR01958 29 KGWVTPEAIAAVAEM------------------LGIPPVWVYEVATFYSMFDTEP---VG--RYHLQVCTNV-PCALRG- 83 (148)
T ss_pred hCCCCHHHHHHHHHH------------------hCcCHHHHHHHHhHHhhcCcCC---CC--CEEEEEcCCc-hhhhcC-
Confidence 356667766666664 2466666666665444322221 11 2357899987 576532
Q ss_pred HHHhhHHHHHHHHHHHHHhc-C-CCCCCceEEEEecCCCcCCCCCccc
Q 008202 512 EAERGIPDILKRIRAVFEKV-G-LKYNESVVIRVTGCPNGCARPYMAE 557 (574)
Q Consensus 512 et~~~a~~l~~~l~~~l~~~-g-l~~~~~ikI~iSGCpn~Ca~~~~aD 557 (574)
+.++.+.+++.+.-. + ...+..+.+.-++|--.|...-..-
T Consensus 84 -----a~~v~~~l~~~L~i~~g~~t~dg~~~l~~~~ClG~C~~aP~v~ 126 (148)
T TIGR01958 84 -----SEALLKYLENKLGIKPGETTPDGRFTLVEVECLGACGNAPVMM 126 (148)
T ss_pred -----HHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCccCccCCCCEEE
Confidence 334556666655311 1 2234579999999999998765433
No 62
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=35.81 E-value=57 Score=35.26 Aligned_cols=40 Identities=13% Similarity=0.258 Sum_probs=30.6
Q ss_pred EEEeCCCCc-CHHHHHHHHHHHHHhCCe-EEEccCCcEEEec
Q 008202 427 GLHVDNGRI-AGKMKKTLREIIEKYNLN-VRITPNQNIILCD 466 (574)
Q Consensus 427 ~v~vp~Grl-~~~~l~~La~la~~yg~~-irlT~~Qnlil~~ 466 (574)
..+=|.||+ +.+.|+.|++||++||.. |-=--+|.|++.+
T Consensus 166 nPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g 207 (388)
T COG1168 166 NPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGG 207 (388)
T ss_pred CCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccC
Confidence 466689998 889999999999999963 3333466777665
No 63
>PF14085 DUF4265: Domain of unknown function (DUF4265)
Probab=31.55 E-value=2.7e+02 Score=24.85 Aligned_cols=58 Identities=16% Similarity=0.125 Sum_probs=43.8
Q ss_pred CCcEEEEEEeCCCCcCHHHHHHHHHHHHHhCCeEEEccCCcEEEecCCcC-CHHHHHHHHHH
Q 008202 421 DGGLFCGLHVDNGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKA-WKRPITTALAQ 481 (574)
Q Consensus 421 dG~~~v~v~vp~Grl~~~~l~~La~la~~yg~~irlT~~Qnlil~~I~~~-~~~~l~~~L~~ 481 (574)
.|.+.+++.+....- +.+..+.+-.+++|+.+..... .++-.+|+++ +.+.|.+.|.+
T Consensus 50 sGnsTiRv~~~~~~~--~~~~~v~~~l~~lG~~~E~~~~-~~lav~VP~~~~~~~i~~~L~~ 108 (117)
T PF14085_consen 50 SGNSTIRVIFDDPGP--DDIEAVREELEALGCTVEGFSE-RMLAVDVPPSVDFDAIKDYLDR 108 (117)
T ss_pred CCCEEEEEEEcCCcc--hhHHHHHHHHHHcCCeEEccCC-CEEEEEECCCCCHHHHHHHHHh
Confidence 577777777654444 6677788888889998888777 7777889875 77888877765
No 64
>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to [, ]: Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 1M2D_A 1M2A_B 1F37_B 1M2B_B 2FUG_B 3M9S_B 3IAM_B 3IAS_K 2YBB_2 3I9V_B ....
Probab=30.36 E-value=64 Score=29.98 Aligned_cols=53 Identities=19% Similarity=0.381 Sum_probs=34.3
Q ss_pred cccccCCCCCCCccchhHHHhhHHHHHHHHHHHHH-hcC-CCCCCceEEEEecCCCcCCCCC
Q 008202 495 ITAMACPSLPLCPLAITEAERGIPDILKRIRAVFE-KVG-LKYNESVVIRVTGCPNGCARPY 554 (574)
Q Consensus 495 r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~-~~g-l~~~~~ikI~iSGCpn~Ca~~~ 554 (574)
..+.-|.|. .|...- +.++.+.+++.+. +.+ ...+..|++.-++|-..|.+.-
T Consensus 66 ~~I~VC~g~-~C~~~G------a~~l~~~l~~~l~i~~g~~~~dg~~~l~~~~ClG~C~~aP 120 (145)
T PF01257_consen 66 HHIRVCTGT-SCHLRG------AEELLEALEEELGIKPGETTEDGKFTLEETGCLGACDQAP 120 (145)
T ss_dssp EEEEEE-SH-HHHTTT------HHHHHHHHHHHHCTSCCCCSTTTTEEEEEESSSSSGGGSS
T ss_pred cEEEeCCCc-hHHhCC------CHHHHHHHHHHhCCcccccCCCceEEEEECCCccccCCCC
Confidence 468899987 476533 3345666766652 111 2235789999999999997654
No 65
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=29.55 E-value=89 Score=25.18 Aligned_cols=51 Identities=16% Similarity=0.181 Sum_probs=35.4
Q ss_pred CCCCcCHHHHHHHHHHHHHhCC---eEEEccCCcEEEecCCcCCHHHHHHHHHH
Q 008202 431 DNGRIAGKMKKTLREIIEKYNL---NVRITPNQNIILCDIRKAWKRPITTALAQ 481 (574)
Q Consensus 431 p~Grl~~~~l~~La~la~~yg~---~irlT~~Qnlil~~I~~~~~~~l~~~L~~ 481 (574)
|.|-+.+=+-.-..+|-+.|-. .||..+..+|-+.+...++.+.|.+.|++
T Consensus 2 p~ga~~AL~~EL~kRl~~~yPd~~v~Vr~~s~~~l~v~g~~~~~k~~i~~iLqe 55 (65)
T PF06183_consen 2 PAGALEALESELTKRLHRQYPDAEVRVRPGSANGLSVSGGKKDDKERIEEILQE 55 (65)
T ss_dssp -TTHHHHHHHHHHHHHHHH-SS-EEEEEEESS-EEEEES--HHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHCCCceEeeeecccCccccCCcCchHHHHHHHHHHH
Confidence 5566665555556778888875 38888999999999988778888888876
No 66
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=27.53 E-value=1.4e+02 Score=23.74 Aligned_cols=53 Identities=17% Similarity=0.373 Sum_probs=35.2
Q ss_pred cccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccE
Q 008202 497 AMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAEL 558 (574)
Q Consensus 497 ~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDI 558 (574)
+.-|.+. .|...- +.++.+.|++.+...++. ..+.+.-+||-..|.+.-.-.|
T Consensus 3 I~VC~~~-~C~~~G------~~~l~~~l~~~~~~~~~~--~~v~v~~~~Clg~C~~~P~v~i 55 (77)
T cd02980 3 ILVCTGT-ACGLRG------AEELLEALEKELGIRGGD--GRVTVERVGCLGACGLAPVVVV 55 (77)
T ss_pred EEEccCC-CcccCC------HHHHHHHHHHHHhhhcCC--CeEEEEEcCCcCcccCCCEEEE
Confidence 5678776 677542 334556666666655553 4688999999999987654433
No 67
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=24.28 E-value=1.1e+02 Score=25.21 Aligned_cols=53 Identities=19% Similarity=0.231 Sum_probs=34.0
Q ss_pred ccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhc-C-CCCCCceEEEEecCCCcCCCCCc
Q 008202 496 TAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKV-G-LKYNESVVIRVTGCPNGCARPYM 555 (574)
Q Consensus 496 ~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~-g-l~~~~~ikI~iSGCpn~Ca~~~~ 555 (574)
.+.-|.|. .|... -+.++.+.+++.+.-. | ...+..|++.-++|-..|.+.-.
T Consensus 3 ~i~vC~~~-~C~~~------G~~~ll~~l~~~l~~~~g~~~~dg~~~l~~~~ClG~C~~gP~ 57 (80)
T cd03081 3 VLKLCRAE-ACQAM------GAEALAAHIKARLGIDFHETTADGSVTLEPVYCLGLCACSPA 57 (80)
T ss_pred EEEEcCCh-HHHhC------CHHHHHHHHHHHhCCCCCCcCCCCeEEEEEeeecCccCCCCE
Confidence 35678876 57643 2344566777665311 1 22345799999999999987653
No 68
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=21.96 E-value=1.3e+02 Score=24.19 Aligned_cols=54 Identities=20% Similarity=0.286 Sum_probs=34.0
Q ss_pred cCCccccHHHHHHHHHHHHHhCCCeEEc--CCCCcEEEcCCCcCCHHHHHHHHHHHc
Q 008202 134 NPCGKVSNQLYLTMDDLADQFGIGTLRL--TTRQTFQLHGVLKKDLKTVMRSIIRSM 188 (574)
Q Consensus 134 ipgG~lt~~ql~~la~iA~~yG~g~i~l--TtRQniqL~gI~~~~l~~i~~~L~~~~ 188 (574)
+|.|.+++=+-.-.-+|...|-+-.+++ .+..++.+.|..+++ ++.+.++.+++
T Consensus 1 lp~ga~~AL~~EL~kRl~~~yPd~~v~Vr~~s~~~l~v~g~~~~~-k~~i~~iLqe~ 56 (65)
T PF06183_consen 1 LPAGALEALESELTKRLHRQYPDAEVRVRPGSANGLSVSGGKKDD-KERIEEILQEM 56 (65)
T ss_dssp --TTHHHHHHHHHHHHHHHH-SS-EEEEEEESS-EEEEES--HHH-HHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHCCCceEeeeecccCccccCCcCchH-HHHHHHHHHHH
Confidence 4777777777777788999998765555 788889999998777 55555554543
No 69
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=21.37 E-value=5.5e+02 Score=28.51 Aligned_cols=37 Identities=19% Similarity=0.410 Sum_probs=22.8
Q ss_pred hHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEec--CCCcC
Q 008202 511 TEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTG--CPNGC 550 (574)
Q Consensus 511 ~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSG--Cpn~C 550 (574)
-+|.+++.+|++++.++|...+.|.+ -|||-| |+..|
T Consensus 176 ~~ty~fl~~vl~Ev~~lF~~~g~P~~---yiHiGGDEv~~~~ 214 (445)
T cd06569 176 PSTYRFVDKVIDEIARMHQEAGQPLT---TIHFGGDEVPEGA 214 (445)
T ss_pred hhHHHHHHHHHHHHHHHHhccCCCcc---eEEEeccccCCCc
Confidence 45667777888888777765444432 366644 55555
No 70
>PF13089 PP_kinase_N: Polyphosphate kinase N-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=20.91 E-value=13 Score=32.88 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=27.7
Q ss_pred HHHhhhceeEeeccCcccCCccceEEEEEE-------------cCCccccHHHHHHHHHHHHHh
Q 008202 104 TQLIKFHGSYQQYNRDERGAKSYSFMLRTK-------------NPCGKVSNQLYLTMDDLADQF 154 (574)
Q Consensus 104 ~~~~k~~G~y~Q~~r~~r~~~~~~fmvRir-------------ipgG~lt~~ql~~la~iA~~y 154 (574)
.+++||.+||..+-. ..|||||- -|.|.-+.+|+..|.+.+.+.
T Consensus 28 lERl~Fl~I~ssNlD-------EFFmVRVA~Lk~~~~~g~~~~~~~g~tP~eqL~~I~~~v~~l 84 (109)
T PF13089_consen 28 LERLKFLAIFSSNLD-------EFFMVRVAGLKRQIEAGVKKRDPDGLTPQEQLDAIRKRVHEL 84 (109)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHCCCHHHHHHCCHHHCC---S---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcchh-------HHHHHHHHHHHHHHHhccCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 668999999976532 37888862 355655667888887776553
No 71
>PRK00441 argR arginine repressor; Provisional
Probab=20.85 E-value=5.5e+02 Score=24.02 Aligned_cols=68 Identities=12% Similarity=0.113 Sum_probs=45.0
Q ss_pred cCCeeee--cCCcEEEEEEeCCCCcCHHHHHHHHHHHHHhCCeEEEccCCcEEEecCCcCCHHHHHHHHHHCCCC
Q 008202 413 HLGWHEQ--GDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLL 485 (574)
Q Consensus 413 ~~G~~~q--~dG~~~v~v~vp~Grl~~~~l~~La~la~~yg~~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~ 485 (574)
.+|..+. .+|.|.+.+.-+... .....|..+...+ -+.++..||+++....+-....+...|.+.++.
T Consensus 46 ~L~lvKv~~~~G~~~Y~l~~~~~~---~~~~~l~~~~~~~--v~~v~~~~~lvvIkT~pG~A~~va~~iD~~~~~ 115 (149)
T PRK00441 46 ELKLIKVLSNDGKYKYATISKTES---NLSDRLVNIFSNT--VISVENVDNMIVIKTISGSASAAAEAIDTLNFD 115 (149)
T ss_pred HcCcEEeECCCCCEEEEeCccccc---chHHHHHHHHHHH--eeeEeecCCEEEEEeCCCcHHHHHHHHHhCCCC
Confidence 4676654 568777776443321 1223444444432 377888999999999999988888888876654
No 72
>PF14527 LAGLIDADG_WhiA: WhiA LAGLIDADG-like domain; PDB: 3HYI_A 3HYJ_D.
Probab=20.01 E-value=2.5e+02 Score=24.02 Aligned_cols=58 Identities=16% Similarity=0.345 Sum_probs=37.7
Q ss_pred CcEEEEEEeCCCCcCHHHHHHHHHHHHHhCCeEEEccCCcEEEecCCcCCHHHHHHHHHHCCCC
Q 008202 422 GGLFCGLHVDNGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLL 485 (574)
Q Consensus 422 G~~~v~v~vp~Grl~~~~l~~La~la~~yg~~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~ 485 (574)
..|++-+..+ +.+....|.++..+++...+++.+++=.+..|... +.|...|.-.|..
T Consensus 20 ~~YhLEi~~~----~~e~a~~l~~lL~~~~i~~k~~~r~~~~~vYlK~~--e~I~dfL~~iGA~ 77 (93)
T PF14527_consen 20 KSYHLEIRFN----DEEFAEQLKELLNKFGINAKIIKRKNKYVVYLKDS--EQISDFLKLIGAH 77 (93)
T ss_dssp T---EEEEES-----HHHHHHHHHHHHHH----EEEEESSEEEEEE--H--HHHHHHHHHTT--
T ss_pred CceEEEEecC----CHHHHHHHHHHHHHcCCCceeeeecCceEEEEcCH--HHHHHHHHHcChH
Confidence 3488888877 46788899999999998888888888877777665 5788888877654
Done!