Query 008202
Match_columns 574
No_of_seqs 350 out of 2407
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 20:35:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008202.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008202hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g38_A SIR-HP, sirhp, sulfite 100.0 4E-109 1E-113 920.4 34.2 480 68-572 12-505 (570)
2 1aop_A Sirhp, sulfite reductas 100.0 5E-94 1.7E-98 790.4 36.2 425 123-572 2-432 (497)
3 1zj8_A Probable ferredoxin-dep 100.0 4.7E-93 1.6E-97 792.6 39.3 450 68-572 31-508 (566)
4 2akj_A Ferredoxin--nitrite red 100.0 5.8E-91 2E-95 778.4 34.8 446 68-572 87-562 (608)
5 3b0g_A NII3, nitrite reductase 100.0 4.4E-91 1.5E-95 778.3 31.8 446 68-572 70-544 (591)
6 3or1_B Sulfite reductase beta; 100.0 2.7E-40 9.4E-45 351.8 17.3 215 126-392 61-354 (386)
7 3mm5_A Sulfite reductase, diss 100.0 1.6E-39 5.6E-44 347.3 17.0 217 124-392 92-379 (418)
8 3mm5_B Sulfite reductase, diss 100.0 2.6E-39 8.8E-44 342.5 17.7 228 110-393 38-338 (366)
9 3or1_A Sulfite reductase alpha 100.0 2.7E-38 9.1E-43 337.9 18.8 218 124-392 94-396 (437)
10 1zj8_A Probable ferredoxin-dep 100.0 6.7E-34 2.3E-38 316.7 15.0 220 108-388 341-566 (566)
11 2akj_A Ferredoxin--nitrite red 100.0 1.5E-32 5.1E-37 307.1 13.9 196 105-360 395-595 (608)
12 3b0g_A NII3, nitrite reductase 100.0 6.5E-33 2.2E-37 309.5 10.8 194 105-359 378-576 (591)
13 1aop_A Sirhp, sulfite reductas 100.0 9.8E-33 3.3E-37 303.3 11.5 211 108-388 271-488 (497)
14 4g38_A SIR-HP, sirhp, sulfite 100.0 9.1E-32 3.1E-36 299.1 11.7 207 109-385 345-558 (570)
15 3or1_B Sulfite reductase beta; 99.9 1.5E-25 5.1E-30 238.5 11.3 141 420-563 59-206 (386)
16 3mm5_A Sulfite reductase, diss 99.9 1.9E-25 6.3E-30 238.8 11.4 140 422-564 94-239 (418)
17 3or1_A Sulfite reductase alpha 99.9 5.7E-25 1.9E-29 235.1 12.5 141 422-565 96-241 (437)
18 3mm5_B Sulfite reductase, diss 99.9 7.4E-25 2.5E-29 231.8 10.5 146 415-563 39-195 (366)
19 3noy_A 4-hydroxy-3-methylbut-2 97.3 0.00019 6.7E-09 74.1 5.4 178 342-572 153-335 (366)
20 3noy_A 4-hydroxy-3-methylbut-2 97.2 0.00039 1.4E-08 71.9 6.3 111 175-363 250-361 (366)
21 4g9p_A 4-hydroxy-3-methylbut-2 95.3 0.021 7.1E-07 60.0 6.2 130 412-566 226-364 (406)
22 4g9p_A 4-hydroxy-3-methylbut-2 91.3 0.16 5.5E-06 53.3 4.7 66 281-364 334-400 (406)
23 3i9v_2 NADH-quinone oxidoreduc 21.6 1.5E+02 0.0053 27.3 6.2 95 433-558 39-136 (181)
24 1vgj_A Hypothetical protein PH 21.3 1.2E+02 0.004 27.1 5.4 111 424-544 3-127 (184)
25 1gyx_A YDCE, B1461, hypothetic 21.0 95 0.0033 23.9 4.0 46 129-178 2-52 (76)
26 1ghh_A DINI, DNA-damage-induci 20.8 1.2E+02 0.0041 24.4 4.5 53 429-481 12-69 (81)
No 1
>4g38_A SIR-HP, sirhp, sulfite reductase [NADPH] hemoprotein beta-compon; snirr, oxidoreductase, sulfite reductase flavoprotein; HET: SRM; 1.56A {Escherichia coli} PDB: 4g39_A* 1aop_A* 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A*
Probab=100.00 E-value=3.9e-109 Score=920.40 Aligned_cols=480 Identities=38% Similarity=0.657 Sum_probs=358.0
Q ss_pred CCCCChhhhhhhccCCCccchHHHhhhc-CCCCChhHHHHhhhceeEeeccCcccCC-------ccceEEEEEEcCCccc
Q 008202 68 ETKRSKVEIIKEQSNFIRYPLNEELLTD-APNVNESATQLIKFHGSYQQYNRDERGA-------KSYSFMLRTKNPCGKV 139 (574)
Q Consensus 68 ~~k~~~~E~~K~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~k~~G~y~Q~~r~~r~~-------~~~~fmvRiripgG~l 139 (574)
..|+||+|+||++||+||+++.++|.+. ...++++|++++||||+|+|+|||.|.+ +.|+||||+|+|+|.+
T Consensus 12 ~~~l~~~E~~K~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~k~~G~y~Q~~r~~~~~~~~~~~~~~~~fm~Rvr~pgG~l 91 (570)
T 4g38_A 12 EGKLTDAERMKHESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVI 91 (570)
T ss_dssp ---------------------------------------------------------------------CCCEECGGGEE
T ss_pred CCCCChHHHHhcccccchhHHHHHHHHhhcCCCCHHHHHHHhhceeeEecccccchhhhccccCcCccEEEEEecCCccc
Confidence 5689999999999999999999888765 4589999999999999999999987653 4689999999999999
Q ss_pred cHHHHHHHHHHHHHh-CCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcceecCCCCCCchhhhhH
Q 008202 140 SNQLYLTMDDLADQF-GIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAPLVRKDYLFA 217 (574)
Q Consensus 140 t~~ql~~la~iA~~y-G~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g-~t~~a~gd~~RNV~acp~~~~~~~~~d~ 217 (574)
|++||++|++||++| |+|+++||||||||||||+++++++++++| .+.| .+.++|||++||||+||+|++...+.|+
T Consensus 92 t~~Ql~~la~iA~~y~g~G~i~lTtRqniQl~gi~~~~~~~i~~~L-~~~gl~~~~a~Gd~vRNV~~~p~p~~g~~~~d~ 170 (570)
T 4g38_A 92 TTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQML-HSVGLDALATAWDMNRNVLCTSNPYESQLHAEA 170 (570)
T ss_dssp EHHHHHHHHHHHHHHBSSCCEEECTTSCEECCSBC-----CHHHHH-HTTTCEECCTTTCCBCCCEECSSCSSGGGHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCeEEEeCCceEEEecCCHHHHHHHHHHH-HHcCCCCccccCCCccceEecCCcccCccHHHH
Confidence 999999999999999 999999999999999999999999999999 7777 5779999999999999998888888999
Q ss_pred HHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCCCCCccc
Q 008202 218 QKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDI 297 (574)
Q Consensus 218 ~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~ 297 (574)
.++|.+|+++|.+.+.+|+|+||+++++.+.+ .||+||..+|||||||+|||||+||+++
T Consensus 171 ~~~a~~i~~~l~~~~~~~~e~~l~~~~~~~~~--------------------~~p~~g~~~LPrKFKiavsg~~~~~~~~ 230 (570)
T 4g38_A 171 YEWAKKISEHLLPRTRAYAEIWLDQEKVATTD--------------------EEPILGQTYLPRKFKTTVVIPPQNDIDL 230 (570)
T ss_dssp HHHHHHHHHHTCC---------------------------------------------------CBCEEEECTTBCTTCG
T ss_pred HHHHHHHHHhhcccchhHHHHHhccchhcccc--------------------cCccccccCCCCceEEEEECCCcccccC
Confidence 99999999999999999999999987765421 2567888899999999999999999999
Q ss_pred ccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccCCCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHH
Q 008202 298 LTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKY 377 (574)
Q Consensus 298 ~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~ 377 (574)
++|||||+++.++ |+..||+|||||++|++|++..|+|++|+.++||++|++++++++|+.+|+++|+|.+|+++||+|
T Consensus 231 ~~~Dig~~a~~~~-~~~~Gf~v~vGGg~g~~~~~~~t~p~~a~~l~~v~~e~v~~~~~ai~~~~~~~G~r~~r~kaRlk~ 309 (570)
T 4g38_A 231 HANDMNFVAIAEN-GKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKY 309 (570)
T ss_dssp GGSSEEEEEEESS-SSEEEEEEEECCBCCCCTTCTTCCCBCCEEEEEEEGGGHHHHHHHHHHHHHHHCC-----CCSHHH
T ss_pred ccCcEEEEEEEeC-CceeeEEEEEccccccccCcccCCCccccccCccCHHHHHHHHHHHHHHHHHhccccchhhhHHHH
Confidence 9999999999874 556799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHhCCCCCCCCCCCcccccccCCeeeecCCcEEEEEEeCCCCcCH----HHHHHHHHHHHHhCCe
Q 008202 378 LISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAG----KMKKTLREIIEKYNLN 453 (574)
Q Consensus 378 li~r~G~e~fr~~ve~~~g~~~~~~~~~~~~~~~~~~G~~~q~dG~~~v~v~vp~Grl~~----~~l~~La~la~~yg~~ 453 (574)
+|++||+++|+++|++++|.++++..+.+.....+|+||++|+||+|+|++++|+|++++ ++++.|++||++|+.+
T Consensus 310 li~~~G~e~f~~~v~~~~g~~~~~~~~~~~~~~~d~~g~~~~~dG~~~v~v~~~~Grl~~~~~~~~l~~La~iAe~~gg~ 389 (570)
T 4g38_A 310 TLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGD 389 (570)
T ss_dssp HHHHHCHHHHHHHHHHHHTCCCBCCCCCCCCBCCCCCEEEECSTTEEEEEECCGGGEECEETTEEHHHHHHHHHHHCSSE
T ss_pred HHHhhhHHHHHHHHHHHhhcccCCCCccCcCCCccccCceecCCCcEEEEEEecCCeecCCccHHHHHHHHHHHHHhCCe
Confidence 999999999999999999999887766555567799999999999999999999999988 5999999999999988
Q ss_pred EEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCC
Q 008202 454 VRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGL 533 (574)
Q Consensus 454 irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl 533 (574)
||+|++|||+|.+|++++++++.+.|+++|+. ...++.+++++||+|.++|++|++||+++++.|++++++.+...++
T Consensus 390 iRlT~~Qniil~gv~~e~l~~i~~~L~~~Gl~--~~~~~~~~~v~aC~G~~~C~~a~~dt~~~a~~L~~~le~~~~~~~l 467 (570)
T 4g38_A 390 FRITANQNLIIAGVPESEKAKIEKIAKESGLM--NAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGV 467 (570)
T ss_dssp EEECTTSCEEEEEEEGGGHHHHHHHHHHTTTT--CCCCHHHHTEEECCCTTTCTTCSSCSTTTHHHHHHHHHHHHHHTTC
T ss_pred EEECCCCcEEEecCCHHHHHHHHHHHHHcCCC--CCCCCcccCeEECCCCCcccchhHhHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999997 3467888899999999999999999999999999999999988777
Q ss_pred CCCCceEEEEecCCCcCCCCCcccEEEEeecCCceEEEE
Q 008202 534 KYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVFQ 572 (574)
Q Consensus 534 ~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~~g~Y~l~l 572 (574)
. |.+++||||||||+|++|+++||||+|++.+.|+||+
T Consensus 468 ~-p~~iki~vSGCpn~C~~~~~aDIGlvG~~~g~y~l~l 505 (570)
T 4g38_A 468 S-DEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHL 505 (570)
T ss_dssp T-TCCCCEEEESSTTCTTCGGGSSEEEEEEETTEEEEEE
T ss_pred C-CCceEEEEeCCCchhhhccccceEEEEecccceEEEE
Confidence 3 3689999999999999999999999999889999997
No 2
>1aop_A Sirhp, sulfite reductase hemoprotein; oxidoreductase, siroheme, [4Fe-4S], snirr, six-electron REDU phosphate complex; HET: SRM; 1.60A {Escherichia coli} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A*
Probab=100.00 E-value=5e-94 Score=790.44 Aligned_cols=425 Identities=38% Similarity=0.681 Sum_probs=361.3
Q ss_pred CccceEEEEEEcCCccccHHHHHHHHHHHHHhC-CCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCc
Q 008202 123 AKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFG-IGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNR 200 (574)
Q Consensus 123 ~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG-~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g-~t~~a~gd~~R 200 (574)
++.|.||+|||+|+|.+|++||++|++||++|| +|++|+|||||||||||+++++++++++| .+.| .+.++|||++|
T Consensus 2 ~~~~~~m~Rvr~p~G~lt~~qlr~la~ia~~yg~~g~~~~TtRq~iql~gi~~~~~~~i~~~L-~~~gl~~~~~~Gd~~R 80 (497)
T 1aop_A 2 EPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQML-HSVGLDALATANDMNR 80 (497)
T ss_dssp ------CEECCCGGGEEEHHHHHHHHHHHHHHBSSCCEEECTTSCEEECCBC-----CHHHHH-HHTTCCCC---CCCBC
T ss_pred CccceEEEEEccCCcccCHHHHHHHHHHHHHhCCCCeEEEECcccEEecCCCHHHHHHHHHHH-HHcCCCCccccCCCCC
Confidence 456899999999999999999999999999999 99999999999999999999999999999 6667 66799999999
Q ss_pred ceecCCCCCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCC
Q 008202 201 NVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLP 280 (574)
Q Consensus 201 NV~acp~~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LP 280 (574)
||++||++.+..++.|+.+++.+|.++|.+.+.+|+|+|||++++.+.. .+|.|+..+||
T Consensus 81 ni~~~p~~~~~~~~~d~~~~a~~l~~~l~~~~~~~~e~wl~~~~~~~~~--------------------~~p~~~~~~LP 140 (497)
T 1aop_A 81 NVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTD--------------------EEPILGQTYLP 140 (497)
T ss_dssp CCEECSSCSSTTHHHHHHHHHHHHHHHTCC----------------------------------------------CCCS
T ss_pred CcccCCcccCChhHHHHHHHHHHHHHHhhhccchhhhhhcccccccccc--------------------CCcccccCCCC
Confidence 9999998744446889999999999999999999999999998876421 25678878999
Q ss_pred CceEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccCCCChhHHHHHHHHHHHH
Q 008202 281 RKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVT 360 (574)
Q Consensus 281 rKfkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~~v~~eev~~~~~ai~~~ 360 (574)
|||||+|||||++|+.+.+|||||+++.++ |...||+|||||++|++|++++|+|++++.++||+++|+++++++|+++
T Consensus 141 ~Kfkiavsg~~~~~~~~~~~Dig~i~~~~~-g~~~G~~v~vGG~~g~~~~~~~~~p~~~~~~~~v~~~~~~~~~~ai~~~ 219 (497)
T 1aop_A 141 RKFKTTVVIPPQNDIDLHANDMNFVAIAEN-GKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTT 219 (497)
T ss_dssp SCBCEEEECTTBCTTCGGGSSEEEEEEEET-TEEEEEEEEECCBCCCCTTCTTCCCBCCEEEEEEEGGGHHHHHHHHHHH
T ss_pred CcEEEEEecCCccccCcccCCeEEEEEEEC-CceeeEEEEecccccccCCcccCCCccccccCCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999875 6567999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCcchhhhHHHHHHHhhhhHHHHHHHHHhCCCCCCCCCCCcccccccCCeeeecCCcEEEEEEeCCCCc---CH
Q 008202 361 QRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AG 437 (574)
Q Consensus 361 ~rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve~~~g~~~~~~~~~~~~~~~~~~G~~~q~dG~~~v~v~vp~Grl---~~ 437 (574)
|+++|+|.+|+++||+|+|++||+++|+++|+++++.++++..+.+.+...+|+||++|+||.|+|++++|+|++ ++
T Consensus 220 ~~~~g~r~~r~~aR~~~li~~~G~e~f~~~v~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~G~~~v~v~~p~G~l~~~~~ 299 (497)
T 1aop_A 220 QRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPA 299 (497)
T ss_dssp HHHHSCSSCSTTCSHHHHHHHHCHHHHHHHHHHHHTCCCBCCCCCCCCBCCCCCEEEECSTTEEEEEECCGGGEECEETT
T ss_pred HHHhCCccchhhHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCCCCCccccccceeEEEcCCceEEEEEECCCCcccCCCH
Confidence 999999999999999999999999999999999999888766655556778999999999999999999999999 77
Q ss_pred H-HHHHHHHHHHHhCCeEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhh
Q 008202 438 K-MKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERG 516 (574)
Q Consensus 438 ~-~l~~La~la~~yg~~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~ 516 (574)
+ +|+.|++||++|+..||+|++|||+|.+|++++++++.+.|++.|+.. . .++.+++++||+|.++|+++++||+++
T Consensus 300 ~~~l~~ladia~~ygg~irlT~~qni~l~gv~~~~l~~l~~~L~~~Gl~~-~-~~~~~r~i~aC~G~~~C~~a~~dt~~~ 377 (497)
T 1aop_A 300 RPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMN-A-VTPQRENSMACVSFPTCPLAMAEAERF 377 (497)
T ss_dssp EEHHHHHHHHHHHCSSEEEECTTSCEEEEEEEGGGHHHHHHHHHHTTTTC-C-CCHHHHTEEECCCTTTCTTCSSCSTTT
T ss_pred HHHHHHHHHHHHHhCCEEEEcCCCCEEEecCCHHHHHHHHHHHHHCCCCC-C-CCCceeeeecccCcccCcchhhhHHHH
Confidence 7 999999999999978999999999999999999999999999999988 3 488889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeecCCceEEEE
Q 008202 517 IPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVFQ 572 (574)
Q Consensus 517 a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~~g~Y~l~l 572 (574)
++.|++++++.+...++. |.+++||||||||+|++|+++||||+|+.+|.|+||+
T Consensus 378 a~~l~~~l~~~~~~~~l~-p~~~~i~vSGCpn~C~~~~~aDIGi~G~~~g~y~i~l 432 (497)
T 1aop_A 378 LPSFIDNIDNLMAKHGVS-DEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHL 432 (497)
T ss_dssp HHHHHHHHHHHHHHTTCT-TCCCCEEEESSTTCTTCGGGSSEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhhcCCC-CcceEEEEECCcchhhhhccCCEEEEEecCCCEEEEE
Confidence 999999999998877652 3689999999999999999999999999888899987
No 3
>1zj8_A Probable ferredoxin-dependent nitrite reductase N; NIRA, sulfite, siroheme, Fe4-S4, Cys-Tyr bond, structural proteomics in europe; HET: SRM; 2.80A {Mycobacterium tuberculosis} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 1zj9_A*
Probab=100.00 E-value=4.7e-93 Score=792.63 Aligned_cols=450 Identities=25% Similarity=0.443 Sum_probs=399.2
Q ss_pred CCCCChhhhhhhccCCC--ccchHHHhhhc-CCCCChhHHH-HhhhceeEeeccCcccCC----------ccceEEEEEE
Q 008202 68 ETKRSKVEIIKEQSNFI--RYPLNEELLTD-APNVNESATQ-LIKFHGSYQQYNRDERGA----------KSYSFMLRTK 133 (574)
Q Consensus 68 ~~k~~~~E~~K~~~~~l--~~~~~~~~~~~-~~~~~~~~~~-~~k~~G~y~Q~~r~~r~~----------~~~~fmvRir 133 (574)
..|+||+|+||++|+|| ++++.+.+++. .++++++|++ ++||||+|+|++++.|++ .+++||||+|
T Consensus 31 ~~~~~~~E~~K~~~~~l~~~~~i~~~~~~~~~~~i~~~d~~~~~k~~G~y~q~~~~~~~~~~~~~~~~~~~~~~~mvRvr 110 (566)
T 1zj8_A 31 REPLNANEELKKAGNPLDVRERIENIYAKQGFDSIDKTDLRGRFRWWGLYTQREQGYDGTWTGDDNIDKLEAKYFMMRVR 110 (566)
T ss_dssp CSCCSHHHHHGGGSCGGGHHHHHHHTHHHHCGGGSCHHHHHTGGGGGTEEEEECTTCCGGGCSGGGHHHHEEEEEEEEEB
T ss_pred CCCCChHHHHhhhcchHHHHHHHHHHHhhcCCCCCCHHHHhhhheEEEeeeecCCccccccccccccccccCceEEEEec
Confidence 56899999999999999 56666667654 5689999998 999999999999876643 2457999999
Q ss_pred cCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcceecCCCC-CCc
Q 008202 134 NPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAP-LVR 211 (574)
Q Consensus 134 ipgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g-~t~~a~gd~~RNV~acp~~-~~~ 211 (574)
+|+|.+|++||++|++||++||+|++++|||||||||||+++++++++++| .+.| .+.++|||++|||++||++ .|.
T Consensus 111 ~p~G~lt~~qlr~la~ia~~yg~g~i~~TtRqniql~gi~~~~l~~i~~~L-~~~gl~~~~~~G~~~Rnv~~~p~~~~~~ 189 (566)
T 1zj8_A 111 CDGGALSAAALRTLGQISTEFARDTADISDRQNVQYHWIEVENVPEIWRRL-DDVGLQTTEACGDCPRVVLGSPLAGESL 189 (566)
T ss_dssp CGGGEECHHHHHHHHHHHHHHSTTEEEECTTSCEEEEEECGGGHHHHHHHH-HTTTCBCTTSSSSSEEEEEECTTTTTCT
T ss_pred CCCCcCCHHHHHHHHHHHHHHCCCeEEEECCccEEEecCCHHHHHHHHHHH-HHcCCCCCCCcCCCCCCeecCcccccCc
Confidence 999999999999999999999999999999999999999999999999999 7778 4669999999999999986 899
Q ss_pred hhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCC
Q 008202 212 KDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPT 291 (574)
Q Consensus 212 ~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~ 291 (574)
.++.|+.+++.+|.+.|.. +++ | .+||+||||+||||+
T Consensus 190 ~~~~D~~~~~~~l~~~~~~--------------------------------------~~~--~--~~LP~KfKiavsgc~ 227 (566)
T 1zj8_A 190 DEVLDPTWAIEEIVRRYIG--------------------------------------KPD--F--ADLPRKYKTAISGLQ 227 (566)
T ss_dssp TCSCCTHHHHHHHHHHHTT--------------------------------------SGG--G--SSCSSCEEEEEESSS
T ss_pred ccccCcHHHHHHHHHHHcC--------------------------------------Ccc--c--ccCCcceEEEEeccC
Confidence 9999999999999887642 111 2 579999999999998
Q ss_pred CCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHHHHHHHHHHHHhCCCCcc
Q 008202 292 DNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDR 370 (574)
Q Consensus 292 ~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~~~ai~~~~rd~g~R~~R 370 (574)
+.| +.++||||+++.++++ ..||+|+|||++|.. |++|+.++ ||+++++++++++|+++|+++|+|+||
T Consensus 228 ~~~--~~~~Dig~i~~~~~~~-~~G~~v~vGG~~g~~-------p~~a~~l~~~v~~e~v~~~~~ai~~~~~~~G~R~~r 297 (566)
T 1zj8_A 228 DVA--HEINDVAFIGVNHPEH-GPGLDLWVGGGLSTN-------PMLAQRVGAWVPLGEVPEVWAAVTSVFRDYGYRRLR 297 (566)
T ss_dssp CSC--GGGSSEEEEEEEETTT-EEEEEEEECCBCSSS-------CBCCEEEEEEECGGGHHHHHHHHHHHHHHHSCCSSG
T ss_pred Ccc--cccCcEEEEEEEecCC-CceEEEEEcccCCCC-------CcchhhhccCCCHHHHHHHHHHHHHHHHHhCccccc
Confidence 854 6899999999986533 479999999999854 99999998 899999999999999999999999999
Q ss_pred hhhhHHHHHHHhhhhHHHHHHH-HHhCCCCCC-CCCCCcccccccCCeeeecCCcEEEEEEeCCCCcCHHHHHHHHHHHH
Q 008202 371 KYSRMKYLISSWGIEKFRSVVE-QYYGKKFEP-FRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIE 448 (574)
Q Consensus 371 ~~aRlk~li~r~G~e~fr~~ve-~~~g~~~~~-~~~~~~~~~~~~~G~~~q~dG~~~v~v~vp~Grl~~~~l~~La~la~ 448 (574)
+++||+++|++||+++|+++|+ ++++.++.+ ..+.+.+...+|.||++|++|.|+|++++|+|++++++|+.||++|+
T Consensus 298 ~~aRl~~li~~~G~e~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~qk~G~~~v~v~~p~G~lt~~~l~~Ladiae 377 (566)
T 1zj8_A 298 AKARLKFLIKDWGIAKFREVLETEYLKRPLIDGPAPEPVKHPIDHVGVQRLKNGLNAVGVAPIAGRVSGTILTAVADLMA 377 (566)
T ss_dssp GGCSHHHHHHHHCHHHHHHHHHHHTTSSCCEECCCCCCCSSCCCCCEEEECTTSSEEEEEBCBTTEEEHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHCHHHHHHHHHHHhcccccccCCCccCccccCCCcceeeccCCcEEEEEeCCCCccCHHHHHHHHHHHH
Confidence 9999999999999999999999 788887754 23334455678999999999999999999999999999999999999
Q ss_pred HhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHH
Q 008202 449 KYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAV 527 (574)
Q Consensus 449 ~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~ 527 (574)
+||. .||+|++|||+|.+|++++++++.++|.+.|+.... ++.+++++||+|.++|++|++||++++..|+++|++.
T Consensus 378 ~yg~g~irlT~~qniil~~v~~~~l~~i~~~L~~~Gl~~~~--s~~~r~~~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~ 455 (566)
T 1zj8_A 378 RAGSDRIRFTPYQKLVILDIPDALLDDLIAGLDALGLQSRP--SHWRRNLMACSGIEFCKLSFAETRVRAQHLVPELERR 455 (566)
T ss_dssp HHTCCCEEECTTSCEEEEEECHHHHHHHHHHHHHTTCBSSC--CHHHHHEEECCBTTTCTTCSSBCHHHHHHHHHHHHHH
T ss_pred HhCCCEEEECCCCcEEEecCCHHHHHHHHHHHHHcCCCCCC--CCcccccccCCCcccCccchhhHHHHHHHHHHHHHHH
Confidence 9997 799999999999999999999999999999998754 4577899999999999999999999999999999988
Q ss_pred HHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeecC--------CceEEEE
Q 008202 528 FEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGP--------NSYQVFQ 572 (574)
Q Consensus 528 l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~~--------g~Y~l~l 572 (574)
+...+...+.+++||||||||+|++|+++||||+|+.. .+|+||+
T Consensus 456 l~~~~~~~~~~~ki~vSGCpN~Ca~~~~aDIGivG~~~~~~~g~~~~gy~i~l 508 (566)
T 1zj8_A 456 LEDINSQLDVPITVNINGCPNSCARIQIADIGFKGQMIDDGHGGSVEGFQVHL 508 (566)
T ss_dssp THHHHTTCCSCCCEEEESSTTCTTCGGGSSEEEEEEEEESSSSCEEEEEEEEE
T ss_pred hhccccccCCCceEEEecCCccchhhhhcceeEEEEeccCCCCccceeEEEEe
Confidence 76532222467999999999999999999999999731 2699987
No 4
>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography, heme, electron transport, oxidoreductase; HET: SRM; 2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1
Probab=100.00 E-value=5.8e-91 Score=778.38 Aligned_cols=446 Identities=25% Similarity=0.388 Sum_probs=390.6
Q ss_pred CCCCChhhhhhhccCCCccch---HHHhhhc-CCCC-----ChhHHH-HhhhceeEeeccCcccCCccceEEEEEEcCCc
Q 008202 68 ETKRSKVEIIKEQSNFIRYPL---NEELLTD-APNV-----NESATQ-LIKFHGSYQQYNRDERGAKSYSFMLRTKNPCG 137 (574)
Q Consensus 68 ~~k~~~~E~~K~~~~~l~~~~---~~~~~~~-~~~~-----~~~~~~-~~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG 137 (574)
..|+||+|+||++|+||+... ++++++. .++| ++++++ ++||||+|+|+.+. .++||||+|+|+|
T Consensus 87 ~~~l~~~E~~K~~~~~l~~~~~~~i~~~a~~~~~~~~~~~~~~~d~~~rlk~~G~y~r~~~~-----~~~~mvRvr~PgG 161 (608)
T 2akj_A 87 RSGINPAEKVKIEKDPMKLFIEDGISDLATLSMEEVDKSKHNKDDIDVRLKWLGLFHRRKHH-----YGRFMMRLKLPNG 161 (608)
T ss_dssp CSSCCHHHHHHHHSCTTHHHHTCHHHHHTTCCHHHHTTSHHHHHHHHTGGGGGTEEECHHHH-----TTCEEEECCCGGG
T ss_pred ccCCChhhhhhhhcCCcccchhhhHHHHhhccccccccccCCHHHHHHHHhhcceeeeccCC-----CceEEEEecCCCc
Confidence 468999999999999998655 4677653 2345 899998 69999999876431 2489999999999
Q ss_pred cccHHHHHHHHHHHHHhC-CCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcceecCCCC-CCchhh
Q 008202 138 KVSNQLYLTMDDLADQFG-IGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAP-LVRKDY 214 (574)
Q Consensus 138 ~lt~~ql~~la~iA~~yG-~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g-~t~~a~gd~~RNV~acp~~-~~~~~~ 214 (574)
.+|++||++|++||++|| +|+++||||||||||||+++++++++++| .+.| .+.++|||++|||++||++ .|..++
T Consensus 162 ~lt~~qlr~ladiA~kyg~~G~i~lTtRq~iql~gi~~e~l~~i~~~L-~~~Gl~~~~~~gd~~Rnv~~~p~~g~c~~~~ 240 (608)
T 2akj_A 162 VTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEIIKGL-ESVGLTSLQSGMDNVRNPVGNPLAGIDPHEI 240 (608)
T ss_dssp EEEHHHHHHHHHHHHTTGGGCCEEECTTSCEEEEEECGGGHHHHHHHH-HTTTCCCTTCSSSSBCCCBCCTTTTTCTTCS
T ss_pred ccCHHHHHHHHHHHHHhCCCCeEEEecCcceEEcCCCHHHHHHHHHHH-HHcCCCCCCCcCCCCCCeEeCCCcccCcchh
Confidence 999999999999999999 79999999999999999999999999999 7777 5558999999999999986 899999
Q ss_pred hhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCCCCC
Q 008202 215 LFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNS 294 (574)
Q Consensus 215 ~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c 294 (574)
.|+.+++.+|.++|.++. .+.|...+||+||||+||||+++|
T Consensus 241 ~D~~~~a~~l~~~l~~~~--------------------------------------~~~~~~~~LPrKfKiavsgc~~~c 282 (608)
T 2akj_A 241 VDTRPFTNLISQFVTANS--------------------------------------RGNLSITNLPRKWNPCVIGSHDLY 282 (608)
T ss_dssp SCCHHHHHHHHHHHTTTT--------------------------------------TCCGGGSCCSSCBCEEECCCTTCT
T ss_pred hhHHHHHHHHHHHHhhcc--------------------------------------cCCccccccCcceEEEeccCcccc
Confidence 999999999999886421 011234689999999999999999
Q ss_pred cccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHHHHHHHHHHHHhCCCCcchhh
Q 008202 295 VDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYS 373 (574)
Q Consensus 295 ~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~~~ai~~~~rd~g~R~~R~~a 373 (574)
+.++++||||+++.++ | ..||+|||||++|+++ |+.+.++. ||+++++++++++|+++|+++|+|.+|+++
T Consensus 283 ~~~~~~Dig~i~~~~~-g-~~Gf~v~vGGg~g~~~------~~~~~~l~~~v~~eev~~~~~ai~~~~~~~G~r~~R~~a 354 (608)
T 2akj_A 283 EHPHINDLAYMPATKN-G-KFGFNLLVGGFFSIKR------CEEAIPLDAWVSAEDVVPVCKAMLEAFRDLGFRGNRQKC 354 (608)
T ss_dssp TCGGGSSEEEEEEESS-S-SEEEEEEECCEECSSC------EECCEEEEEEEEGGGHHHHHHHHHHHHHHHCCCSSGGGC
T ss_pred cccccceEEEEEEEeC-C-ccEEEEEECcccCCCC------cccceecccccCHHHHHHHHHHHHHHHHHhCCcccccch
Confidence 9999999999999874 4 4799999999998753 57777775 899999999999999999999999999999
Q ss_pred hHHHHHHHhhhhHHHHHHHHHh-CCCCCCCCCC----CcccccccCCeeeecC-CcEEEEEEeCCCCcCHHHHHHHHHHH
Q 008202 374 RMKYLISSWGIEKFRSVVEQYY-GKKFEPFRQL----PEWEFKSHLGWHEQGD-GGLFCGLHVDNGRIAGKMKKTLREII 447 (574)
Q Consensus 374 Rlk~li~r~G~e~fr~~ve~~~-g~~~~~~~~~----~~~~~~~~~G~~~q~d-G~~~v~v~vp~Grl~~~~l~~La~la 447 (574)
||+|+|++||+++|+++|++++ +.++.+..+. ..|...+|+||++|++ |.|+|++.+|+|+++++||+.||+||
T Consensus 355 Rl~~li~~~G~e~f~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~Gv~~qk~~G~~~v~v~vp~Grlt~~qLr~LadiA 434 (608)
T 2akj_A 355 RMMWLIDELGMEAFRGEVEKRMPEQVLERASSEELVQKDWERREYLGVHPQKQQGLSFVGLHIPVGRLQADEMEELARIA 434 (608)
T ss_dssp SHHHHHHHHCHHHHHHHHHTTSTTSCCCCCCSCBCSCSSCCCCCCBEEEECSSTTEEEEEECCGGGEECHHHHHHHHHHH
T ss_pred hHHHHHHhhchHHHHHHHHHHhccCCCCcCccccccccccccccccceeecCcCCeEEEEEeCCCccCCHHHHHHHHHHH
Confidence 9999999999999999999987 7777654422 1366789999999985 99999999999999999999999999
Q ss_pred HHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHH-CCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHH
Q 008202 448 EKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQ-AGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIR 525 (574)
Q Consensus 448 ~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~-~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~ 525 (574)
++||. .+|+|+||||+|.+|+++++++|+++|.. .|+... .++.+++++||+|+++|+++++||++++..|.++++
T Consensus 435 e~yg~G~irlT~~QnIil~~v~~e~l~~l~~el~~~~~~~~~--~g~~~r~i~aC~G~~~C~~a~~Dt~~~a~~l~~~l~ 512 (608)
T 2akj_A 435 DVYGSGELRLTVEQNIIIPNVENSKIDSLLNEPLLKERYSPE--PPILMKGLVACTGSQFCGQAIIETKARALKVTEEVQ 512 (608)
T ss_dssp HHHSSSEEEEETTTEEEEEEEETTTHHHHTTSHHHHTTSCSS--CCTTTTEEEECCGGGTCTTCSSCCHHHHHHHHHHHH
T ss_pred HHhCCCeEEECCCCCeEECCCCHHHHHHHHHHHhhhcccCCC--CCccccceeeCCCCCCCCchhhhHHHHHHHHHHHHH
Confidence 99986 79999999999999999999999988765 566653 366779999999999999999999999999988887
Q ss_pred HHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeec----CC----ceEEEE
Q 008202 526 AVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDG----PN----SYQVFQ 572 (574)
Q Consensus 526 ~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~----~g----~Y~l~l 572 (574)
+.+ .+ |.+++||||||||+|++|+++||||+|+. +| .|+||+
T Consensus 513 ~~~---~l--p~k~kI~vSGCpn~Ca~~~iaDIGlvG~~~~~~~G~~~~gy~v~l 562 (608)
T 2akj_A 513 RLV---SV--TRPVRMHWTGCPNSCGQVQVADIGFMGCMTRDENGKPCEGADVFV 562 (608)
T ss_dssp HHE---EC--SSCCEEEEESSTTCTTCGGGSSEEEEEEEEECTTCCEEEEEEEEE
T ss_pred Hhc---CC--CcceEEEEeCCCCccccccccceEEEEEeeccCCCcccceEEEEE
Confidence 653 24 46899999999999999999999999974 33 499997
No 5
>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein, oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB: 3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A* 3b0j_A* 3b0l_A* 3b0h_A*
Probab=100.00 E-value=4.4e-91 Score=778.29 Aligned_cols=446 Identities=25% Similarity=0.390 Sum_probs=389.1
Q ss_pred CCCCChhhhhhhccCCCccch---HHHhhhc-CCCC-----ChhHHH-HhhhceeEeeccCcccCCccceEEEEEEcCCc
Q 008202 68 ETKRSKVEIIKEQSNFIRYPL---NEELLTD-APNV-----NESATQ-LIKFHGSYQQYNRDERGAKSYSFMLRTKNPCG 137 (574)
Q Consensus 68 ~~k~~~~E~~K~~~~~l~~~~---~~~~~~~-~~~~-----~~~~~~-~~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG 137 (574)
..|+||+|+||++|+||+... ++++++. .++| ++++++ ++||+|+|+|+.+. .++||+|+|+|+|
T Consensus 70 ~~~l~~~E~~K~~~~~l~~~~~~~i~~~a~~~~~~~~~~~~~~~d~~~r~k~~G~y~~~~~~-----~~~~mvRvr~PgG 144 (591)
T 3b0g_A 70 RKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHRRKNQ-----YGRFMMRLKLPNG 144 (591)
T ss_dssp CTTCCHHHHHHHHSCTTHHHHTCHHHHHTTSCHHHHTTSHHHHHHHHTGGGGGTEEECTTTS-----TTEEEEECBCGGG
T ss_pred ccCCChhhhhhhhcCCcccchhhhHHHHhhccccccccccCCHHHHHHHhhhceeEEeccCC-----CCeEEEEecCCCc
Confidence 468999999999999998655 4677653 2345 899998 69999999876442 2589999999999
Q ss_pred cccHHHHHHHHHHHHHhC-CCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcceecCCCC-CCchhh
Q 008202 138 KVSNQLYLTMDDLADQFG-IGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAP-LVRKDY 214 (574)
Q Consensus 138 ~lt~~ql~~la~iA~~yG-~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g-~t~~a~gd~~RNV~acp~~-~~~~~~ 214 (574)
.+|++||++|++||++|| +|+++||||||||||||+++++++++++| .+.| .+.++|||++|||++||++ .|..++
T Consensus 145 ~lt~~qlr~ladia~~yg~~G~i~~TtRq~iql~gi~~~~l~~i~~~L-~~~gl~~~~~~gd~~Rnv~~~p~~g~c~~~~ 223 (591)
T 3b0g_A 145 VTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGL-AEVGLTSLQSGMDNVRNPVGNPLAGIDPEEI 223 (591)
T ss_dssp EEEHHHHHHHHHHHHHTGGGCEEEECTTSCEEEEEEEGGGHHHHHHHH-HHTTCBCTTCSSSSBCCCBCCTTTTTCTTCS
T ss_pred eECHHHHHHHHHHHHHhCCCCeEEEeCCccEEEecCCHHHHHHHHHHH-HHcCCCCCcCccCCCCCeEeCCCcccCcchh
Confidence 999999999999999999 79999999999999999999999999999 7777 4558999999999999986 899999
Q ss_pred hhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCCCCC
Q 008202 215 LFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNS 294 (574)
Q Consensus 215 ~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c 294 (574)
.|+++++.+|.++|.+++. +.|...+||+||||+|||||++|
T Consensus 224 ~D~~~~a~~l~~~l~~~~~--------------------------------------~~~~~~~LPrKfKiavsgc~~~c 265 (591)
T 3b0g_A 224 VDTRPYTNLLSQFITGNSR--------------------------------------GNPAVSNLPRKWNPCVVGSHDLY 265 (591)
T ss_dssp SCCHHHHHHHHHHHHTTTT--------------------------------------CCGGGSCCSSCBCEEECCCTTCT
T ss_pred hhHHHHHHHHHHHHhhccc--------------------------------------CCccccccCcceEEEEccCcccc
Confidence 9999999999998764210 11234689999999999999999
Q ss_pred cccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHHHHHHHHHHHHhCCCCcchhh
Q 008202 295 VDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYS 373 (574)
Q Consensus 295 ~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~~~ai~~~~rd~g~R~~R~~a 373 (574)
+.+.++||||+++.++ | ..||+|+|||++|.++ |+++.++. ||++|++++++++|+++|+++|+|.+|+++
T Consensus 266 ~~~~~~Dig~i~~~~~-g-~~Gf~v~vGG~~g~~~------~~~~~~l~~~v~~e~v~~~~~ai~~~~~~~G~r~~R~ka 337 (591)
T 3b0g_A 266 EHPHINDLAYMPATKD-G-RFGFNLLVGGFFSAKR------CDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKC 337 (591)
T ss_dssp TCGGGSSEEEEEEEET-T-EEEEEEEECCEECSSC------EECCEEEEEEEEGGGHHHHHHHHHHHHHHHCCCSSGGGC
T ss_pred cccccceEEEEEEEcC-C-CceEEEEEccccCCCC------cccceeeccccCHHHHHHHHHHHHHHHHHhcccccccch
Confidence 9999999999999874 4 3699999999998652 67888874 899999999999999999999999999999
Q ss_pred hHHHHHHHhhhhHHHHHHHHHh-CCCCCCCCCC----CcccccccCCeeeecC-CcEEEEEEeCCCCcCHHHHHHHHHHH
Q 008202 374 RMKYLISSWGIEKFRSVVEQYY-GKKFEPFRQL----PEWEFKSHLGWHEQGD-GGLFCGLHVDNGRIAGKMKKTLREII 447 (574)
Q Consensus 374 Rlk~li~r~G~e~fr~~ve~~~-g~~~~~~~~~----~~~~~~~~~G~~~q~d-G~~~v~v~vp~Grl~~~~l~~La~la 447 (574)
||+|+|++||+++|+++|++++ +.++.+..+. ..|...+|+||++|++ |.|++++++|+|+++++||+.||+||
T Consensus 338 R~~~li~~~G~e~f~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~G~~~qk~~g~~~v~v~~p~Grlt~~~Lr~LadiA 417 (591)
T 3b0g_A 338 RMMWLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLA 417 (591)
T ss_dssp SHHHHHHHHCHHHHHHHHHHTSGGGCCBCCCSCCSCCSSCCCCCCSEEEECSSTTEEEEEECCGGGEECHHHHHHHHHHH
T ss_pred hHHHHHHhccHHHHHHHHHHHhccCcCCCCccccccccccccccccceeecCcCCeEEEEEeCCCcCCCHHHHHHHHHHH
Confidence 9999999999999999999987 6666544321 1366789999999985 99999999999999999999999999
Q ss_pred HHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHH
Q 008202 448 EKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRA 526 (574)
Q Consensus 448 ~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~ 526 (574)
++||. .+|+|+||||+|.+|+++++++|+++|...++... .++.+++++||+|+++|+++++||++++..|.+++++
T Consensus 418 e~yg~g~irlT~~QnI~l~~v~~e~l~~l~~el~~~~~~~~--~g~~~r~i~aC~G~~~C~~a~~dt~~~a~~l~~~l~~ 495 (591)
T 3b0g_A 418 DEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPD--PPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQR 495 (591)
T ss_dssp HHHSSSEEEECTTSCEEEEEEEGGGHHHHTTCGGGGTSCSS--CCHHHHTCEECCGGGTCTTCSSCCHHHHHHHHHHHHH
T ss_pred HHhCCCeEEECCCCceEeCCCCHHHHHHHHHHHHhccCCCC--CCCCccceecCCCcccCcchhhhHHHHHHHHHHHHHH
Confidence 99986 79999999999999999999999988766666542 3566789999999999999999999999999888876
Q ss_pred HHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeec----CC----ceEEEE
Q 008202 527 VFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDG----PN----SYQVFQ 572 (574)
Q Consensus 527 ~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~----~g----~Y~l~l 572 (574)
.+ .+ |.+++||||||||+|++|+++||||+|+. +| .|+||+
T Consensus 496 ~~---~l--p~k~kI~iSGCpn~C~~~~~aDIG~vG~~~~~~~G~~~~gy~v~l 544 (591)
T 3b0g_A 496 QV---SL--TKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFL 544 (591)
T ss_dssp HE---EC--CSCCCEEEESSTTCTTCGGGSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred hc---CC--CcceEEEEeCCCCcccCcccccEEEEEEeecCCCCccccceEEEE
Confidence 53 24 46899999999999999999999999974 33 499997
No 6
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=100.00 E-value=2.7e-40 Score=351.83 Aligned_cols=215 Identities=22% Similarity=0.311 Sum_probs=189.6
Q ss_pred ceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcC-------CCCCCCCCC
Q 008202 126 YSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-------STLGACGDL 198 (574)
Q Consensus 126 ~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g-------~t~~a~gd~ 198 (574)
+.||||++.| |.+|++||+.|++||++||+|++||||||||||+||+.+++++++++| .+.| ++++++|+.
T Consensus 61 ~~~tvRv~~p-G~lt~~qLr~LadiA~kyg~G~irlTtrqnI~l~gi~~e~l~~l~~~L-~~~Gl~~~~~~~~~g~~G~~ 138 (386)
T 3or1_B 61 KVFTVRCGAA-RLMSTSHIREACEIAKKFCNGHLRFTTRNNIEFMVDNEETLKALVADL-KTRKFAAGSFKFPIGGTGAS 138 (386)
T ss_dssp EEEEEEECCC-SEEEHHHHHHHHHHHHHHSTTEEEECTTSCEEEEESSHHHHHHHHHHH-TTCBCTTSCBSSCBCCCSSS
T ss_pred cEEEEEeCCC-ceeCHHHHHHHHHHHHHhCCCeEEECCCCeEEEecCCHHHHHHHHHHH-HhcCCCccccCCCccccCCc
Confidence 5899999999 999999999999999999999999999999999999999999999999 7777 566789999
Q ss_pred CcceecCCCC-CCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCC
Q 008202 199 NRNVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQ 277 (574)
Q Consensus 199 ~RNV~acp~~-~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~ 277 (574)
+|||++||+. +|..+..|+.+++.+|.+.|.+ .|...
T Consensus 139 vRni~aC~G~~~C~~a~~Dt~~~a~~l~~~l~~------------------------------------------~~~~~ 176 (386)
T 3or1_B 139 ISNIVHTQGWVYCHTPATDASGPVKAVMDELFE------------------------------------------EFTSM 176 (386)
T ss_dssp CCCCBCCCGGGTCSSCSSCSHHHHHHHHHHTHH------------------------------------------HHSCC
T ss_pred ccceEecCCccccchhHHHHHHHHHHHHHHHHH------------------------------------------hhhcc
Confidence 9999999985 9999999999999999887642 12235
Q ss_pred CCCCceEEEEEcCCCCCcccccCCEEEEEEecC----------------------------------CC-----------
Q 008202 278 FLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDE----------------------------------NG----------- 312 (574)
Q Consensus 278 ~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~~----------------------------------~g----------- 312 (574)
.||+||||+|||||++|+.++++||||++...+ +|
T Consensus 177 ~LP~K~kI~vsGCpn~C~~~~~~Dig~vg~~r~~p~id~e~~~~~Ce~~~cv~~CPt~AI~~~~~~~~g~~~~~v~id~~ 256 (386)
T 3or1_B 177 RLPAIVRVSLACCINMCGAVHCSDIGLVGIHRKPPMIDHENLAELCEIPLAVAACPTAAVKPITAEVNGQKVKSVAINND 256 (386)
T ss_dssp CSSSCCCEEEESSTTCCSSGGGSSEEEEEECCSCCCCCTTTHHHHCCHHHHHHHCTTCCEEEEEEEETTEEEEEEEECTT
T ss_pred ccceeeEEeeccCcccccccccccccccccccccceechhhhcccccchhhhhhCchhhccccccccCCccccccccCCC
Confidence 799999999999999999999999999998520 12
Q ss_pred --------------------cceeEEEEEccCCCCcCCccccccccccccC-CCCh-----hHHHHHHHHHHHHHHHhCC
Q 008202 313 --------------------EPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPK-----EDILYAVKAIVVTQRENGR 366 (574)
Q Consensus 313 --------------------~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~-----eev~~~~~ai~~~~rd~g~ 366 (574)
+..||.|++||+.|.. ...|++++.+. |++. +|+.+++++++++|+++|+
T Consensus 257 ~Ci~Cg~C~~~CP~~Ai~~~~~~g~~i~vGGk~~~~----~~~~~~~~~l~~~~~~e~~~~~e~~~~i~~i~~~~~e~g~ 332 (386)
T 3or1_B 257 RCMYCGNCYTMCPALPLSDGTGDGIAIMVGGKISNR----IKVPSFSKVVVAFVPNEPPRWPTMAKIVKKIVEVYAEDAR 332 (386)
T ss_dssp TCCCCCHHHHHCTTCCCCCTTTCEEEEEECCBCCCS----SSCCBCCEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHCC
T ss_pred cCCccccHHHhCcHhhCcCCCCceEEEEEccccCcc----cccccccceeecccccCCccHHHHHHHHHHHHHHHHHHCC
Confidence 1259999999998742 12489999885 7755 6999999999999999998
Q ss_pred CCcchhhhHHHHHHHhhhhHHHHHHH
Q 008202 367 RDDRKYSRMKYLISSWGIEKFRSVVE 392 (574)
Q Consensus 367 R~~R~~aRlk~li~r~G~e~fr~~ve 392 (574)
++|||+++|+|+|+++|+++++
T Consensus 333 ----~~ER~g~~i~R~G~~~f~~~~~ 354 (386)
T 3or1_B 333 ----KYERIGDWIHRIGWETFYEKTG 354 (386)
T ss_dssp ----TTCCHHHHHHHHCHHHHHHHHC
T ss_pred ----cCCCHHHHHHHcCHHHHHHHHC
Confidence 5899999999999999999885
No 7
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=100.00 E-value=1.6e-39 Score=347.27 Aligned_cols=217 Identities=18% Similarity=0.226 Sum_probs=190.7
Q ss_pred ccceEEEEEEcCCcc-ccHHHHHHHHHHHHHhCCCeEEcC-CCCcEEEcCCCcCCHHHHHHHHHH--HcCCCCCCCCCCC
Q 008202 124 KSYSFMLRTKNPCGK-VSNQLYLTMDDLADQFGIGTLRLT-TRQTFQLHGVLKKDLKTVMRSIIR--SMGSTLGACGDLN 199 (574)
Q Consensus 124 ~~~~fmvRiripgG~-lt~~ql~~la~iA~~yG~g~i~lT-tRQniqL~gI~~~~l~~i~~~L~~--~~g~t~~a~gd~~ 199 (574)
..+.||||+++|+|+ +|++||+.|++||++||+|++|+| |||||||+||+.+++++++++| . +.|++++++|+.+
T Consensus 92 ~~~~~tvRv~~P~Gr~lt~~qLr~LadIAekyG~G~irlTgtrqnI~l~gv~~e~l~~i~~eL-~~~~~Gl~~ggsG~~v 170 (418)
T 3mm5_A 92 VEHFHTMRINQPSGWFYSTKALRGLCDVWEKWGSGLTNFHGSTGDIIFLGTRSEYLQPCFEDL-GNLEIPFDIGGSGSDL 170 (418)
T ss_dssp GSBCEEEEECCCGGGEEEHHHHHHHHHHHHHHSCSEEETTCSSSCEEEEEECHHHHHHHHHHH-HHSSSCCCBCCCSSSB
T ss_pred cceEEEEEEeCCCCcccCHHHHHHHHHHHHHhCCCEEEEecCCCceEeCCCCHHHHHHHHHHH-hcccccCCcCCccccc
Confidence 456899999999997 999999999999999999999999 9999999999999999999999 6 8899899999999
Q ss_pred cceecCCCC-CCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCC
Q 008202 200 RNVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQF 278 (574)
Q Consensus 200 RNV~acp~~-~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~ 278 (574)
||+++||+. +|..+..|+++++.+|.+.|... +....
T Consensus 171 Rni~aC~G~~~C~~a~~Dt~~la~~L~~~l~~~------------------------------------------~~~~~ 208 (418)
T 3mm5_A 171 RTPSACMGPALCEFACYDTLELCYDLTMTYQDE------------------------------------------LHRPM 208 (418)
T ss_dssp CCCEECCGGGTCTTCSSCHHHHHHHHHHHTHHH------------------------------------------HHSCC
T ss_pred cceEecCCcccccchhhhHHHHHHHHHHHHHHh------------------------------------------hhhcc
Confidence 999999985 99999999999999998876310 11246
Q ss_pred CCCceEEEEEcCCCCCccc-ccCCEEEEEEecC-----------------------------------------------
Q 008202 279 LPRKFKVAVTVPTDNSVDI-LTNDIGVVVVSDE----------------------------------------------- 310 (574)
Q Consensus 279 LPrKfkI~isgc~~~c~~~-~~~DIG~va~~~~----------------------------------------------- 310 (574)
||+||||+||||||+|+.+ .++||||+++.++
T Consensus 209 LP~KfKI~iSGCpN~C~~~~~~~DIGiiG~~r~~~~iD~e~~~~~~~gc~i~~~cv~~CPt~Ai~~~~~~~~id~~~Ci~ 288 (418)
T 3mm5_A 209 WPYKFKIKCAGCPNDCVASKARSDFAIIGTWKDDIKVDQEAVKEYASWMDIENEVVKLCPTGAIKWDGKELTIDNRECVR 288 (418)
T ss_dssp SSSCBCEEEESSTTCTTCHHHHCSEEEEEEESSCCEECHHHHHHHHTTSCHHHHTGGGCTTCCEEECSSCEEECTTTCCC
T ss_pred CCcceEEeeeccccchhhHHHhccccccccccccccccHHHHhhhccccccCccccccCCccccccCCceeEEChhhcCc
Confidence 9999999999999999997 7999999998532
Q ss_pred -------------CCcceeEEEEEccCCCCcCCccccccccccccC-CCC----hhHHHHHHHHHHHHHHHhCCCCcchh
Q 008202 311 -------------NGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVP----KEDILYAVKAIVVTQRENGRRDDRKY 372 (574)
Q Consensus 311 -------------~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~----~eev~~~~~ai~~~~rd~g~R~~R~~ 372 (574)
.+...||.|++||+.+.. ..|++++.+. |++ .+++++++++|+++|+++|.+ +
T Consensus 289 Cg~Ci~~CP~~~~~~~~~g~~I~vGGk~~~~-----~g~~lg~~~~pf~~~~~p~eei~~~ie~i~~~~~e~g~~----~ 359 (418)
T 3mm5_A 289 CMHCINKMPKALKPGDERGATILIGGKAPFV-----EGAVIGWVAVPFVEVEKPYDEIKEILEAIWDWWDEEGKF----R 359 (418)
T ss_dssp CCHHHHHCTTTEECCSSEEEEEEECCBCSTT-----TCCBCCEEEEEEECCCTTCHHHHHHHHHHHHHHHHHCCT----T
T ss_pred cChhHHhCcHhhccCCCCCeEEEEeCCCccc-----ccccccceeeccccCCCCHHHHHHHHHHHHHHHHHhCCC----C
Confidence 122369999999987421 2388998875 776 699999999999999999873 7
Q ss_pred hhHHHHHHHhhhhHHHHHHH
Q 008202 373 SRMKYLISSWGIEKFRSVVE 392 (574)
Q Consensus 373 aRlk~li~r~G~e~fr~~ve 392 (574)
|||+++|+|+|+++|+++++
T Consensus 360 ER~g~~i~RiG~~~F~e~v~ 379 (418)
T 3mm5_A 360 ERIGELIWRKGMREFLKVIG 379 (418)
T ss_dssp CCHHHHHHHHCHHHHHHHTT
T ss_pred CcHHHHHHHcCHHHHHHHHC
Confidence 99999999999999998874
No 8
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=100.00 E-value=2.6e-39 Score=342.53 Aligned_cols=228 Identities=18% Similarity=0.262 Sum_probs=196.6
Q ss_pred ceeEeeccCcccCCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHc-
Q 008202 110 HGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSM- 188 (574)
Q Consensus 110 ~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~- 188 (574)
-|++.|.+.. .++.||||+++|+ .+|++||+.|++||++||+|++||||||||||+||+.+++++++++| .+.
T Consensus 38 ~Gv~~~~~e~----gd~~~~vRv~~p~-~lt~~qlr~ladiA~kyg~G~lrlTtrqni~l~gv~~~~l~~l~~~L-~~~~ 111 (366)
T 3mm5_B 38 PGVIKRVAES----GDVIYVVRFGTPR-LLSIYTVRELCDIADKYSDGYLRWTSRNNVEFFVTDESKIDDLINEV-QERV 111 (366)
T ss_dssp TTEEEEEETT----SCEEEEEEECCCS-EEEHHHHHHHHHHHHHHSTTEEEECTTSCEEEEESCGGGHHHHHHHH-HHHH
T ss_pred CCEEEeeccC----CCceEEEEECCcc-ccCHHHHHHHHHHHHHhCCCeEEEcCCCeEEEecCCHHHHHHHHHHH-HHhc
Confidence 3777776421 1368999999999 99999999999999999999999999999999999999999999999 666
Q ss_pred CCCCCCC-CC-----CCcceecCCCC-CCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCC
Q 008202 189 GSTLGAC-GD-----LNRNVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNS 261 (574)
Q Consensus 189 g~t~~a~-gd-----~~RNV~acp~~-~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~ 261 (574)
|++.+++ |+ .+|||++||+. +|..+..|+++++.+|.+.|.+.
T Consensus 112 Gl~~g~~~G~~~~~~~~rni~aC~g~~~C~~a~~Dt~~~a~~l~~~l~~~------------------------------ 161 (366)
T 3mm5_B 112 GFPCGGTWDAVKGEYGLSNIVHTQGWIHCHTPAIDASGIVKAVMDELYEY------------------------------ 161 (366)
T ss_dssp CCCBCCCEETTTTEECCCCCBCCCHHHHCSSCSSCSHHHHHHHHHHTHHH------------------------------
T ss_pred CCCcccccCCcccccceeeeecCCCccccchHHHHHHHHHHHHHHHHHHh------------------------------
Confidence 9888888 99 99999999985 99999999999999998887421
Q ss_pred CCCCCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEEEEec--------------------------------
Q 008202 262 HGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSD-------------------------------- 309 (574)
Q Consensus 262 ~~~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~-------------------------------- 309 (574)
|....||+||||+||||+++|+.+..+||||++...
T Consensus 162 ------------~~~~~LP~k~kI~vsgC~~~C~~~~~~Dig~~g~~r~~p~id~~~c~~~Ce~~~Cv~~CP~~AI~~~~ 229 (366)
T 3mm5_B 162 ------------FTDHKLPAMCRISLACCANMCGAVHASDIAIVGIHRTPPIPNDEAIRKTCEIPSTVAACPTGALKPDM 229 (366)
T ss_dssp ------------HHSCCBSSCCCEEEESSTTCSSSGGGSSEEEEEECCSCCCCCHHHHHHHCCHHHHHHTCTTCCEEEET
T ss_pred ------------hccccccccceeccccCccccccccccccccccccccceEEcchhccccccccchhccCCccceEecC
Confidence 223579999999999999999999999999999841
Q ss_pred ---------------------------CCCcceeEEEEEccCCCCcCCccccccccccccC-CCCh-----hHHHHHHHH
Q 008202 310 ---------------------------ENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPK-----EDILYAVKA 356 (574)
Q Consensus 310 ---------------------------~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~-----eev~~~~~a 356 (574)
..+...|+.+++||+.|.. ...|++++.+. |++. +|+++++++
T Consensus 230 ~~~~~~id~~~C~~Cg~C~~~CP~~Ai~~~~~~g~~i~vGgk~~~~----~~~~~lg~~~~~~~~~~~p~~~ev~~~v~~ 305 (366)
T 3mm5_B 230 KNKTIKVDVEKCMYCGNCYTMCPGMPLFDPENDGAAIMVGGKLSEA----RRMPELSKVVVPWVPNEPPRWPTLVKYVKQ 305 (366)
T ss_dssp TTTEEEECGGGCCCCCHHHHHCTTCCCCCTTTCEEEEEECCBCSCT----TSCCBCCEEEEEEEECCTTTCHHHHHHHHH
T ss_pred CCCeEEEehhhCCCcchHHHhCCHhhcccccCCceEEEEcCccccc----cccCcccchhhccccCCCcchHHHHHHHHH
Confidence 0122469999999998841 12389999885 7754 899999999
Q ss_pred HHHHHHHhCCCCcchhhhHHHHHHHhhhhHHHHHHHH
Q 008202 357 IVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQ 393 (574)
Q Consensus 357 i~~~~rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve~ 393 (574)
++++|+++|+ ++|||+++|+|+|+++|+++++.
T Consensus 306 i~~~y~~~g~----~~eR~~~~i~r~G~~~f~~~~~~ 338 (366)
T 3mm5_B 306 ILEAWAANAN----KHERLIEWVDRIGWERFFELTGL 338 (366)
T ss_dssp HHHHHHHHCC----TTCCHHHHHHHHCHHHHHHHHTC
T ss_pred HHHHHHHhCC----ccccHHHHHHHhCHHHHHHHHCC
Confidence 9999999996 57999999999999999999863
No 9
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=100.00 E-value=2.7e-38 Score=337.93 Aligned_cols=218 Identities=16% Similarity=0.187 Sum_probs=190.4
Q ss_pred ccceEEEEEEcCCcc-ccHHHHHHHHHHHHHhCCCeEEcCC-CCcEEEcCCCcCCHHHHHHHHHHHcCCCCCCCCCCCcc
Q 008202 124 KSYSFMLRTKNPCGK-VSNQLYLTMDDLADQFGIGTLRLTT-RQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRN 201 (574)
Q Consensus 124 ~~~~fmvRiripgG~-lt~~ql~~la~iA~~yG~g~i~lTt-RQniqL~gI~~~~l~~i~~~L~~~~g~t~~a~gd~~RN 201 (574)
..+.||||+++|+|+ +|++||+.|++||++||+|++|+|| ||||||+||+.+++++++++|..++|++++++|+.+||
T Consensus 94 v~~~~tVRV~~P~Gr~lTaeqLR~LadIAekyG~G~irlTt~rqNI~L~gi~~e~le~l~~eL~~~~Gl~~ggsG~~vRn 173 (437)
T 3or1_A 94 VAHFHTVRLAQPAAKYYTAEYLEAICDVWDLRGSGLTNMHGSTGDIVLLGTQTPQLEEIFFEMTHNLNTDLGGSGSNLRT 173 (437)
T ss_dssp GSBCCEEEECCCGGGEEEHHHHHHHHHHHHHHSCSEEESCCSSSCEEEECCCGGGHHHHHHHHHHHSCCCBCCCSSSBCC
T ss_pred cceEEEEEEeCCCCCccCHHHHHHHHHHHHHhCCCEEEEcCccceEEEecCCHHHHHHHHHHHHhhcCcCccccCCccee
Confidence 456899999999997 9999999999999999999999998 59999999999999999999943889888999999999
Q ss_pred eecCCCC-CCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCC
Q 008202 202 VLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLP 280 (574)
Q Consensus 202 V~acp~~-~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LP 280 (574)
|++||+. +|..+..|+++++.+|.+.|... +....||
T Consensus 174 ivaC~G~~~C~~a~~DT~~la~~L~~~l~~~------------------------------------------~~~~~LP 211 (437)
T 3or1_A 174 PESCLGISRCEFACYDTQLMCYQLTQDYQDE------------------------------------------LHRPAFP 211 (437)
T ss_dssp CEECCGGGSCSSCCSCHHHHHHHHHHHTHHH------------------------------------------HHSCCSS
T ss_pred eeccccccccCccccccchhhhhhHhhhhhc------------------------------------------cccccCC
Confidence 9999985 99999999999999999876420 1124699
Q ss_pred CceEEEEEcCCCCCccc-ccCCEEEEEEecC-------------------------------------------------
Q 008202 281 RKFKVAVTVPTDNSVDI-LTNDIGVVVVSDE------------------------------------------------- 310 (574)
Q Consensus 281 rKfkI~isgc~~~c~~~-~~~DIG~va~~~~------------------------------------------------- 310 (574)
+||||+||||||+|+.+ .++||||+++.++
T Consensus 212 ~KfKI~iSGCpN~C~~~v~~aDIGiiG~~r~~i~id~~~v~~~~~~e~~~~~~a~~g~~~~~~di~~~vv~~CPt~ai~~ 291 (437)
T 3or1_A 212 YKFKFKFDGCPNGCVASMARSDFAVIGTWKDDIKIDQEAVKAYVGGEFKPNAGAHAGRDWGKFDIEAEVVGLCPTGCMTY 291 (437)
T ss_dssp SCBCEEEESSTTCTTCHHHHCSEEEEEEESSCCEECHHHHHHHHHTSSCGGGGTTTTSCCCSCCHHHHTTTTCTTCCEEE
T ss_pred ceeeEeeccccccccchhhhccccccccccCCCccCHHHHHHHhhcCCCCcccccccCcCcccccchhhhccCcHHheee
Confidence 99999999999999998 6999999999632
Q ss_pred ---------------------------CCcceeEEEEEccCCCCcCCccccccccccccC-CCC----hhHHHHHHHHHH
Q 008202 311 ---------------------------NGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVP----KEDILYAVKAIV 358 (574)
Q Consensus 311 ---------------------------~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~----~eev~~~~~ai~ 358 (574)
.+...||.|+|||+.+.. ..|++++.+. |++ .+++.+++++|+
T Consensus 292 ~~~~l~Id~~~C~~Cg~Ci~~CP~al~~~~~~G~~ilvGgk~~i~-----~g~~l~~~~~pf~~~~~p~~ei~~~i~~i~ 366 (437)
T 3or1_A 292 ESGTLSIDNKNCTRCMHCINTMPRALKIGDERGASILVGAKAPVL-----DGAQMGSLLIPFIAAEEPFDEVKEVIENIW 366 (437)
T ss_dssp ETTEEEECGGGCCCCSHHHHHCTTTEECCSSEEEEEEECCBCSTT-----TCCBCCEEEEEEECCCTTCHHHHHHHHHHH
T ss_pred cCCEEEEccccCCchhhhHhhCcHhhccCCCCceEEEEeCCCCcc-----cCCccceeeeecccCCCCHHHHHHHHHHHH
Confidence 112479999999988632 2388999875 766 799999999999
Q ss_pred HHHHHhCCCCcchhhhHHHHHHHhhhhHHHHHHH
Q 008202 359 VTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVE 392 (574)
Q Consensus 359 ~~~rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve 392 (574)
++|.++|. ++|||+++|+|+|+++|++.++
T Consensus 367 ~~~~e~gk----~~ER~ge~i~R~G~~~f~e~~~ 396 (437)
T 3or1_A 367 EWWMEEGK----NRERLGETMKRVGFQKLLEVTG 396 (437)
T ss_dssp HHHHHHSC----TTCCHHHHHHHHCHHHHHHHTT
T ss_pred HHHHHcCC----CCccHHHHHHHcCHHHHHHHHC
Confidence 99999997 5799999999999999987763
No 10
>1zj8_A Probable ferredoxin-dependent nitrite reductase N; NIRA, sulfite, siroheme, Fe4-S4, Cys-Tyr bond, structural proteomics in europe; HET: SRM; 2.80A {Mycobacterium tuberculosis} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 1zj9_A*
Probab=100.00 E-value=6.7e-34 Score=316.70 Aligned_cols=220 Identities=17% Similarity=0.239 Sum_probs=188.7
Q ss_pred hhceeEeeccCcccCCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHH
Q 008202 108 KFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRS 187 (574)
Q Consensus 108 k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~ 187 (574)
.+.|++.|++ +.|+||+++|+|++|++|++.|++||++||.|.+|+|++|||+|.||+.++++++++.| .+
T Consensus 341 ~~~G~~~qk~--------G~~~v~v~~p~G~lt~~~l~~Ladiae~yg~g~irlT~~qniil~~v~~~~l~~i~~~L-~~ 411 (566)
T 1zj8_A 341 DHVGVQRLKN--------GLNAVGVAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKLVILDIPDALLDDLIAGL-DA 411 (566)
T ss_dssp CCCEEEECTT--------SSEEEEEBCBTTEEEHHHHHHHHHHHHHHTCCCEEECTTSCEEEEEECHHHHHHHHHHH-HH
T ss_pred CCcceeeccC--------CcEEEEEeCCCCccCHHHHHHHHHHHHHhCCCEEEECCCCcEEEecCCHHHHHHHHHHH-HH
Confidence 4689999874 47999999999999999999999999999999999999999999999999999999999 88
Q ss_pred cCCCCCCCCCCCcceecCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCC
Q 008202 188 MGSTLGACGDLNRNVLAPPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNF 266 (574)
Q Consensus 188 ~g~t~~a~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~ 266 (574)
.|+..+..+ ..||+++|++ ++|..++.|++.++..|.+.|... +++
T Consensus 412 ~Gl~~~~s~-~~r~~~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~---l~~----------------------------- 458 (566)
T 1zj8_A 412 LGLQSRPSH-WRRNLMACSGIEFCKLSFAETRVRAQHLVPELERR---LED----------------------------- 458 (566)
T ss_dssp TTCBSSCCH-HHHHEEECCBTTTCTTCSSBCHHHHHHHHHHHHHH---THH-----------------------------
T ss_pred cCCCCCCCC-cccccccCCCcccCccchhhHHHHHHHHHHHHHHH---hhc-----------------------------
Confidence 887776655 7799999998 599999999988888877765310 000
Q ss_pred CCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEEEEecC--CC-cceeEEEEEccCCCCcCCccccccccccccC
Q 008202 267 PDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDE--NG-EPQGFNLYVGGGMGRTHRLETTFPRLGEQLG 343 (574)
Q Consensus 267 ~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~~--~g-~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~ 343 (574)
. ...+|.||||+||||||+|+.+.++||||++.... +| ...||+||+||+.|.. |++++.+.
T Consensus 459 ------~--~~~~~~~~ki~vSGCpN~Ca~~~~aDIGivG~~~~~~~g~~~~gy~i~lGG~~g~~-------~~~g~~l~ 523 (566)
T 1zj8_A 459 ------I--NSQLDVPITVNINGCPNSCARIQIADIGFKGQMIDDGHGGSVEGFQVHLGGHLGLD-------AGFGRKLR 523 (566)
T ss_dssp ------H--HTTCCSCCCEEEESSTTCTTCGGGSSEEEEEEEEESSSSCEEEEEEEEESCBCSTT-------CBCCEECT
T ss_pred ------c--ccccCCCceEEEecCCccchhhhhcceeEEEEeccCCCCccceeEEEEeCCCCCCC-------Cccccccc
Confidence 0 02478899999999999999999999999998642 12 2469999999998753 88998774
Q ss_pred --CCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHhhhhHHH
Q 008202 344 --YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFR 388 (574)
Q Consensus 344 --~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e~fr 388 (574)
.|+.++++++++++++.|++++. +.|||.+|++|+|+++|+
T Consensus 524 ~~~v~~eei~~~l~~l~~~y~~~~~----~~Erf~~~i~R~G~~~~~ 566 (566)
T 1zj8_A 524 QHKVTSDELGDYIDRVVRNFVKHRS----EGERFAQWVIRAEEDDLR 566 (566)
T ss_dssp TCCEETTTHHHHHHHHHHHHHHSCC----TTCCHHHHHHHSCGGGGC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhCC----CCCCHHHHHHhcCHHhcC
Confidence 48999999999999999999876 479999999999999874
No 11
>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography, heme, electron transport, oxidoreductase; HET: SRM; 2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1
Probab=99.97 E-value=1.5e-32 Score=307.08 Aligned_cols=196 Identities=19% Similarity=0.284 Sum_probs=172.1
Q ss_pred HHhhhceeEeeccCcccCCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHH
Q 008202 105 QLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSI 184 (574)
Q Consensus 105 ~~~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L 184 (574)
...+|.|+|.|++. +.||||+++|+|++|++|++.|++||++||.|.+|+|+||||+|+||+.++++++++++
T Consensus 395 ~~~~~~Gv~~qk~~-------G~~~v~v~vp~Grlt~~qLr~LadiAe~yg~G~irlT~~QnIil~~v~~e~l~~l~~el 467 (608)
T 2akj_A 395 ERREYLGVHPQKQQ-------GLSFVGLHIPVGRLQADEMEELARIADVYGSGELRLTVEQNIIIPNVENSKIDSLLNEP 467 (608)
T ss_dssp CCCCCBEEEECSST-------TEEEEEECCGGGEECHHHHHHHHHHHHHHSSSEEEEETTTEEEEEEEETTTHHHHTTSH
T ss_pred ccccccceeecCcC-------CeEEEEEeCCCccCCHHHHHHHHHHHHHhCCCeEEECCCCCeEECCCCHHHHHHHHHHH
Confidence 45788999999864 48999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHcCCCCCCCCCCCcceecCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCC
Q 008202 185 IRSMGSTLGACGDLNRNVLAPPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHG 263 (574)
Q Consensus 185 ~~~~g~t~~a~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~ 263 (574)
....+++.+ +|+.+||+++||+ ++|..++.|++.++..|.+.|..
T Consensus 468 ~~~~~~~~~-~g~~~r~i~aC~G~~~C~~a~~Dt~~~a~~l~~~l~~--------------------------------- 513 (608)
T 2akj_A 468 LLKERYSPE-PPILMKGLVACTGSQFCGQAIIETKARALKVTEEVQR--------------------------------- 513 (608)
T ss_dssp HHHTTSCSS-CCTTTTEEEECCGGGTCTTCSSCCHHHHHHHHHHHHH---------------------------------
T ss_pred hhhcccCCC-CCccccceeeCCCCCCCCchhhhHHHHHHHHHHHHHH---------------------------------
Confidence 333566553 5889999999998 59999999999999999887631
Q ss_pred CCCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEEEEec--CCCc-ceeEEEEEccCCCCcCCcccccccccc
Q 008202 264 TNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSD--ENGE-PQGFNLYVGGGMGRTHRLETTFPRLGE 340 (574)
Q Consensus 264 ~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~--~~g~-~~Gf~v~vGGg~G~~~~~~~t~p~la~ 340 (574)
...||+||||+||||||+|+.+.++||||++... .+|+ ..||+||+||+.|.. |++++
T Consensus 514 ------------~~~lp~k~kI~vSGCpn~Ca~~~iaDIGlvG~~~~~~~G~~~~gy~v~lGG~~g~~-------~rlg~ 574 (608)
T 2akj_A 514 ------------LVSVTRPVRMHWTGCPNSCGQVQVADIGFMGCMTRDENGKPCEGADVFVGGRIGSD-------SHLGD 574 (608)
T ss_dssp ------------HEECSSCCEEEEESSTTCTTCGGGSSEEEEEEEEECTTCCEEEEEEEEECCBCSTT-------CBCCE
T ss_pred ------------hcCCCcceEEEEeCCCCccccccccceEEEEEeeccCCCcccceEEEEECCcCCCC-------Cchhh
Confidence 0247999999999999999999999999999863 2343 479999999998854 89999
Q ss_pred ccC-CCChhHHHHHHHHHHHH
Q 008202 341 QLG-YVPKEDILYAVKAIVVT 360 (574)
Q Consensus 341 ~l~-~v~~eev~~~~~ai~~~ 360 (574)
.++ +|+++++++++++++..
T Consensus 575 ~l~~~v~~eev~~~l~~ll~~ 595 (608)
T 2akj_A 575 IYKKAVPCKDLVPVVAEILIN 595 (608)
T ss_dssp EEEEEEETTTHHHHHHHHHHH
T ss_pred HhhcCCCHHHHHHHHHHHHHH
Confidence 997 89999999999999973
No 12
>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein, oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB: 3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A* 3b0j_A* 3b0l_A* 3b0h_A*
Probab=99.97 E-value=6.5e-33 Score=309.49 Aligned_cols=194 Identities=19% Similarity=0.284 Sum_probs=171.0
Q ss_pred HHhhhceeEeeccCcccCCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHH
Q 008202 105 QLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSI 184 (574)
Q Consensus 105 ~~~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L 184 (574)
...++.|+|.|++. +.||||+++|+|++|++|++.|++||++||.|.+|+|+||||+|+||+.++++++++++
T Consensus 378 ~~~~~~G~~~qk~~-------g~~~v~v~~p~Grlt~~~Lr~LadiAe~yg~g~irlT~~QnI~l~~v~~e~l~~l~~el 450 (591)
T 3b0g_A 378 ERRDYLGVHPQKQE-------GYSFIGLHIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEP 450 (591)
T ss_dssp CCCCCSEEEECSST-------TEEEEEECCGGGEECHHHHHHHHHHHHHHSSSEEEECTTSCEEEEEEEGGGHHHHTTCG
T ss_pred ccccccceeecCcC-------CeEEEEEeCCCcCCCHHHHHHHHHHHHHhCCCeEEECCCCceEeCCCCHHHHHHHHHHH
Confidence 35678999999864 48999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHcCCCCCCCCCCCcceecCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCC
Q 008202 185 IRSMGSTLGACGDLNRNVLAPPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHG 263 (574)
Q Consensus 185 ~~~~g~t~~a~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~ 263 (574)
...++..+ +|+.+|||++||+ ++|..++.|+++++..|.+.|..
T Consensus 451 -~~~~~~~~-~g~~~r~i~aC~G~~~C~~a~~dt~~~a~~l~~~l~~--------------------------------- 495 (591)
T 3b0g_A 451 -VLSTFSPD-PPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQR--------------------------------- 495 (591)
T ss_dssp -GGGTSCSS-CCHHHHTCEECCGGGTCTTCSSCCHHHHHHHHHHHHH---------------------------------
T ss_pred -HhccCCCC-CCCCccceecCCCcccCcchhhhHHHHHHHHHHHHHH---------------------------------
Confidence 45565543 6888999999998 59999999999999999887631
Q ss_pred CCCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEEEEec--CCCc-ceeEEEEEccCCCCcCCcccccccccc
Q 008202 264 TNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSD--ENGE-PQGFNLYVGGGMGRTHRLETTFPRLGE 340 (574)
Q Consensus 264 ~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~--~~g~-~~Gf~v~vGGg~G~~~~~~~t~p~la~ 340 (574)
...||+||||+||||||+|+.+.++||||++... .+|+ ..||+||+||+.|.. |++++
T Consensus 496 ------------~~~lp~k~kI~iSGCpn~C~~~~~aDIG~vG~~~~~~~G~~~~gy~v~lGG~~g~~-------~rlg~ 556 (591)
T 3b0g_A 496 ------------QVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSD-------SHLGE 556 (591)
T ss_dssp ------------HEECCSCCCEEEESSTTCTTCGGGSSEEEEEEEEECTTSCEEEEEEEEECCBCSSS-------CBCCE
T ss_pred ------------hcCCCcceEEEEeCCCCcccCcccccEEEEEEeecCCCCccccceEEEECCcCCCC-------Cchhh
Confidence 0247999999999999999999999999999863 2343 479999999999854 89999
Q ss_pred ccC-CCChhHHHHHHHHHHH
Q 008202 341 QLG-YVPKEDILYAVKAIVV 359 (574)
Q Consensus 341 ~l~-~v~~eev~~~~~ai~~ 359 (574)
.++ +|+++|+++++++++.
T Consensus 557 ~l~~~v~~eev~~~i~~ll~ 576 (591)
T 3b0g_A 557 VYKKAVPCDDLVPLVVDLLV 576 (591)
T ss_dssp EEEEEEEGGGHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHH
Confidence 997 8999999999999986
No 13
>1aop_A Sirhp, sulfite reductase hemoprotein; oxidoreductase, siroheme, [4Fe-4S], snirr, six-electron REDU phosphate complex; HET: SRM; 1.60A {Escherichia coli} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A*
Probab=99.97 E-value=9.8e-33 Score=303.34 Aligned_cols=211 Identities=15% Similarity=0.160 Sum_probs=183.1
Q ss_pred hhceeEeeccCcccCCccceEEEEEEcCCccc---cHH-HHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHH
Q 008202 108 KFHGSYQQYNRDERGAKSYSFMLRTKNPCGKV---SNQ-LYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRS 183 (574)
Q Consensus 108 k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~l---t~~-ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~ 183 (574)
.+.|+++|++ +.|+||+++|+|++ +++ |++.|++||++|| |.||+|++|||+|.||+.++++++++.
T Consensus 271 ~~~G~~~q~~--------G~~~v~v~~p~G~l~~~~~~~~l~~ladia~~yg-g~irlT~~qni~l~gv~~~~l~~l~~~ 341 (497)
T 1aop_A 271 DRIGWVKGID--------DNWHLTLFIENGRILDYPARPLKTGLLEIAKIHK-GDFRITANQNLIIAGVPESEKAKIEKI 341 (497)
T ss_dssp CCCEEEECST--------TEEEEEECCGGGEECEETTEEHHHHHHHHHHHCS-SEEEECTTSCEEEEEEEGGGHHHHHHH
T ss_pred cceeEEEcCC--------ceEEEEEECCCCcccCCCHHHHHHHHHHHHHHhC-CEEEEcCCCCEEEecCCHHHHHHHHHH
Confidence 3678888864 58999999999999 888 9999999999998 999999999999999999999999999
Q ss_pred HHHHcCCCCCCCCCCCcceecCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCC
Q 008202 184 IIRSMGSTLGACGDLNRNVLAPPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSH 262 (574)
Q Consensus 184 L~~~~g~t~~a~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~ 262 (574)
| ++.|+.. +.++.+||+++||+ ++|..+..|+++++..|.+.|...
T Consensus 342 L-~~~Gl~~-~~~~~~r~i~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~------------------------------- 388 (497)
T 1aop_A 342 A-KESGLMN-AVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNL------------------------------- 388 (497)
T ss_dssp H-HHTTTTC-CCCHHHHTEEECCCTTTCTTCSSCSTTTHHHHHHHHHHH-------------------------------
T ss_pred H-HHCCCCC-CCCCceeeeecccCcccCcchhhhHHHHHHHHHHHHHHH-------------------------------
Confidence 9 8888666 55778899999998 599999999998777776655210
Q ss_pred CCCCCCCCCCcccCCCC-CCceEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccc
Q 008202 263 GTNFPDSPEPIYGTQFL-PRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQ 341 (574)
Q Consensus 263 ~~~~~~~~e~~yg~~~L-PrKfkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~ 341 (574)
+....| |.||||+||||||+|+.+..+||||++..+ | +|+|++||..+ . |++++.
T Consensus 389 -----------~~~~~l~p~~~~i~vSGCpn~C~~~~~aDIGi~G~~~--g---~y~i~lGG~~~-~-------~~~g~~ 444 (497)
T 1aop_A 389 -----------MAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAP--G---RYNLHLGGNRI-G-------TRIPRM 444 (497)
T ss_dssp -----------HHHTTCTTCCCCEEEESSTTCTTCGGGSSEEEEEEET--T---EEEEEECCCTT-S-------CSCCEE
T ss_pred -----------HhhcCCCCcceEEEEECCcchhhhhccCCEEEEEecC--C---CEEEEECCCCC-C-------cchhhh
Confidence 001234 899999999999999999999999999864 2 69999999875 2 688888
Q ss_pred cC-CCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHhhhhHHH
Q 008202 342 LG-YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFR 388 (574)
Q Consensus 342 l~-~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e~fr 388 (574)
+. +|+.++++++++++++.|++++. .+|||.++++|+|+++|.
T Consensus 445 ~~~~v~~~ei~~~l~~l~~~y~~~~~----~~Erf~~~i~R~G~~~~~ 488 (497)
T 1aop_A 445 YKENITEPEILASLDELIGRWAKERE----AGEGFGDFTVRAGIIRPV 488 (497)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHCC----TTCCHHHHHHHTTSSCCC
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHhCC----CCCcHHHHHHHcCcHHhh
Confidence 85 78999999999999999999876 479999999999999886
No 14
>4g38_A SIR-HP, sirhp, sulfite reductase [NADPH] hemoprotein beta-compon; snirr, oxidoreductase, sulfite reductase flavoprotein; HET: SRM; 1.56A {Escherichia coli} PDB: 4g39_A* 1aop_A* 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A*
Probab=99.97 E-value=9.1e-32 Score=299.12 Aligned_cols=207 Identities=14% Similarity=0.158 Sum_probs=180.8
Q ss_pred hceeEeeccCcccCCccceEEEEEEcCCccccH----HHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHH
Q 008202 109 FHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSN----QLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSI 184 (574)
Q Consensus 109 ~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~----~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L 184 (574)
+.|+++|.+ |.|.|++++|+|++++ +|++.|++||++|| |.||||++|||+|.||+.++++++++.|
T Consensus 345 ~~g~~~~~d--------G~~~v~v~~~~Grl~~~~~~~~l~~La~iAe~~g-g~iRlT~~Qniil~gv~~e~l~~i~~~L 415 (570)
T 4g38_A 345 RIGWVKGID--------DNWHLTLFIENGRILDYPARPLKTGLLEIAKIHK-GDFRITANQNLIIAGVPESEKAKIEKIA 415 (570)
T ss_dssp CCEEEECST--------TEEEEEECCGGGEECEETTEEHHHHHHHHHHHCS-SEEEECTTSCEEEEEEEGGGHHHHHHHH
T ss_pred ccCceecCC--------CcEEEEEEecCCeecCCccHHHHHHHHHHHHHhC-CeEEECCCCcEEEecCCHHHHHHHHHHH
Confidence 568888754 6899999999999998 69999999999998 9999999999999999999999999999
Q ss_pred HHHcCCCCCCCCCCCcceecCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCC
Q 008202 185 IRSMGSTLGACGDLNRNVLAPPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHG 263 (574)
Q Consensus 185 ~~~~g~t~~a~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~ 263 (574)
+++|+. ++.++..||+++||+ ++|..+..|++.++..|.+.|...
T Consensus 416 -~~~Gl~-~~~~~~~~~v~aC~G~~~C~~a~~dt~~~a~~L~~~le~~-------------------------------- 461 (570)
T 4g38_A 416 -KESGLM-NAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNL-------------------------------- 461 (570)
T ss_dssp -HHTTTT-CCCCHHHHTEEECCCTTTCTTCSSCSTTTHHHHHHHHHHH--------------------------------
T ss_pred -HHcCCC-CCCCCcccCeEECCCCCcccchhHhHHHHHHHHHHHHHHH--------------------------------
Confidence 888876 677788999999998 599999999998877777665310
Q ss_pred CCCCCCCCCcccCCCC-CCceEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCcccccccccccc
Q 008202 264 TNFPDSPEPIYGTQFL-PRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQL 342 (574)
Q Consensus 264 ~~~~~~~e~~yg~~~L-PrKfkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l 342 (574)
+....| |.||||+||||||+|+.+.++||||++... .+|+||+||+.|. |++++.+
T Consensus 462 ----------~~~~~l~p~~iki~vSGCpn~C~~~~~aDIGlvG~~~-----g~y~l~lGG~~~~--------~r~g~~~ 518 (570)
T 4g38_A 462 ----------MAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAP-----GRYNLHLGGNRIG--------TRIPRMY 518 (570)
T ss_dssp ----------HHHTTCTTCCCCEEEESSTTCTTCGGGSSEEEEEEET-----TEEEEEECCCTTS--------CSCCEEE
T ss_pred ----------HhhcCCCCCceEEEEeCCCchhhhccccceEEEEecc-----cceEEEECCcCCC--------cccchhh
Confidence 001235 899999999999999999999999999754 3799999998762 7889888
Q ss_pred C-CCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHhhhh
Q 008202 343 G-YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIE 385 (574)
Q Consensus 343 ~-~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e 385 (574)
. .|++++++++++.+++.|++++. .+|||.+|++|+|+.
T Consensus 519 ~~~v~~~ei~~~l~~ll~~y~~~r~----~~E~f~~~~~R~G~~ 558 (570)
T 4g38_A 519 KENITEPEILASLDELIGRWAKERE----AGEGFGDFTVRAGII 558 (570)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHCC----TTCCHHHHHHHTTSS
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhCC----CCCcHHHHHHhcCCc
Confidence 6 79999999999999999999876 479999999999975
No 15
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=99.92 E-value=1.5e-25 Score=238.48 Aligned_cols=141 Identities=16% Similarity=0.198 Sum_probs=128.3
Q ss_pred cCCcEEEEEEeCCCCcCHHHHHHHHHHHHHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCC------CCCCC
Q 008202 420 GDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLP------RYVDP 492 (574)
Q Consensus 420 ~dG~~~v~v~vp~Grl~~~~l~~La~la~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~------~~~~~ 492 (574)
+++.|+|++.+| |+++++||+.|++||++||. .+|||++|||+|.+|+++++++|.++|.+.||... ...+.
T Consensus 59 g~~~~tvRv~~p-G~lt~~qLr~LadiA~kyg~G~irlTtrqnI~l~gi~~e~l~~l~~~L~~~Gl~~~~~~~~~g~~G~ 137 (386)
T 3or1_B 59 GDKVFTVRCGAA-RLMSTSHIREACEIAKKFCNGHLRFTTRNNIEFMVDNEETLKALVADLKTRKFAAGSFKFPIGGTGA 137 (386)
T ss_dssp SCEEEEEEECCC-SEEEHHHHHHHHHHHHHHSTTEEEECTTSCEEEEESSHHHHHHHHHHHTTCBCTTSCBSSCBCCCSS
T ss_pred CCcEEEEEeCCC-ceeCHHHHHHHHHHHHHhCCCeEEECCCCeEEEecCCHHHHHHHHHHHHhcCCCccccCCCccccCC
Confidence 356789999999 99999999999999999997 79999999999999999999999999999997432 12456
Q ss_pred CccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEee
Q 008202 493 LNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGD 563 (574)
Q Consensus 493 ~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~ 563 (574)
.+|++++|+|..+|+++++||..++.+|.++|.+.+....|| .||+|+||||||+|++++++||||+|.
T Consensus 138 ~vRni~aC~G~~~C~~a~~Dt~~~a~~l~~~l~~~~~~~~LP--~K~kI~vsGCpn~C~~~~~~Dig~vg~ 206 (386)
T 3or1_B 138 SISNIVHTQGWVYCHTPATDASGPVKAVMDELFEEFTSMRLP--AIVRVSLACCINMCGAVHCSDIGLVGI 206 (386)
T ss_dssp SCCCCBCCCGGGTCSSCSSCSHHHHHHHHHHTHHHHSCCCSS--SCCCEEEESSTTCCSSGGGSSEEEEEE
T ss_pred cccceEecCCccccchhHHHHHHHHHHHHHHHHHhhhccccc--eeeEEeeccCccccccccccccccccc
Confidence 779999999999999999999999999999998888776665 689999999999999999999999996
No 16
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=99.92 E-value=1.9e-25 Score=238.80 Aligned_cols=140 Identities=17% Similarity=0.241 Sum_probs=128.4
Q ss_pred CcEEEEEEeCCCC-cCHHHHHHHHHHHHHhCC-eEEEc-cCCcEEEecCCcCCHHHHHHHHH--HCCCCCCCCCCCCccc
Q 008202 422 GGLFCGLHVDNGR-IAGKMKKTLREIIEKYNL-NVRIT-PNQNIILCDIRKAWKRPITTALA--QAGLLLPRYVDPLNIT 496 (574)
Q Consensus 422 G~~~v~v~vp~Gr-l~~~~l~~La~la~~yg~-~irlT-~~Qnlil~~I~~~~~~~l~~~L~--~~Gl~~~~~~~~~~r~ 496 (574)
+.|++++.+|+|+ ++++||+.|++||++||. .+||| ++|||+|.+|+.++++++.++|. +.|+..+. .++.+|+
T Consensus 94 ~~~tvRv~~P~Gr~lt~~qLr~LadIAekyG~G~irlTgtrqnI~l~gv~~e~l~~i~~eL~~~~~Gl~~gg-sG~~vRn 172 (418)
T 3mm5_A 94 HFHTMRINQPSGWFYSTKALRGLCDVWEKWGSGLTNFHGSTGDIIFLGTRSEYLQPCFEDLGNLEIPFDIGG-SGSDLRT 172 (418)
T ss_dssp BCEEEEECCCGGGEEEHHHHHHHHHHHHHHSCSEEETTCSSSCEEEEEECHHHHHHHHHHHHHSSSCCCBCC-CSSSBCC
T ss_pred eEEEEEEeCCCCcccCHHHHHHHHHHHHHhCCCEEEEecCCCceEeCCCCHHHHHHHHHHHhcccccCCcCC-ccccccc
Confidence 3789999999998 899999999999999997 69999 89999999999999999999999 99998765 4556689
Q ss_pred cccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCC-CcccEEEEeec
Q 008202 497 AMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARP-YMAELGLVGDG 564 (574)
Q Consensus 497 ~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~-~~aDIGlvG~~ 564 (574)
+++|+|..+|.++++||+.++..|.+++.+.++...|| .+|||+||||||+|+++ +++||||+|+-
T Consensus 173 i~aC~G~~~C~~a~~Dt~~la~~L~~~l~~~~~~~~LP--~KfKI~iSGCpN~C~~~~~~~DIGiiG~~ 239 (418)
T 3mm5_A 173 PSACMGPALCEFACYDTLELCYDLTMTYQDELHRPMWP--YKFKIKCAGCPNDCVASKARSDFAIIGTW 239 (418)
T ss_dssp CEECCGGGTCTTCSSCHHHHHHHHHHHTHHHHHSCCSS--SCBCEEEESSTTCTTCHHHHCSEEEEEEE
T ss_pred eEecCCcccccchhhhHHHHHHHHHHHHHHhhhhccCC--cceEEeeeccccchhhHHHhccccccccc
Confidence 99999999999999999999999999988887776665 68999999999999998 79999999974
No 17
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=99.91 E-value=5.7e-25 Score=235.13 Aligned_cols=141 Identities=11% Similarity=0.178 Sum_probs=128.9
Q ss_pred CcEEEEEEeCCCC-cCHHHHHHHHHHHHHhCC-eEEEcc-CCcEEEecCCcCCHHHHHHHHH-HCCCCCCCCCCCCcccc
Q 008202 422 GGLFCGLHVDNGR-IAGKMKKTLREIIEKYNL-NVRITP-NQNIILCDIRKAWKRPITTALA-QAGLLLPRYVDPLNITA 497 (574)
Q Consensus 422 G~~~v~v~vp~Gr-l~~~~l~~La~la~~yg~-~irlT~-~Qnlil~~I~~~~~~~l~~~L~-~~Gl~~~~~~~~~~r~~ 497 (574)
+.|++++.+|+|+ ++++||+.|++||++||. .+|||+ +|||+|.+++.+++++|.++|. ++|+..+. .++.+|++
T Consensus 96 ~~~tVRV~~P~Gr~lTaeqLR~LadIAekyG~G~irlTt~rqNI~L~gi~~e~le~l~~eL~~~~Gl~~gg-sG~~vRni 174 (437)
T 3or1_A 96 HFHTVRLAQPAAKYYTAEYLEAICDVWDLRGSGLTNMHGSTGDIVLLGTQTPQLEEIFFEMTHNLNTDLGG-SGSNLRTP 174 (437)
T ss_dssp BCCEEEECCCGGGEEEHHHHHHHHHHHHHHSCSEEESCCSSSCEEEECCCGGGHHHHHHHHHHHSCCCBCC-CSSSBCCC
T ss_pred eEEEEEEeCCCCCccCHHHHHHHHHHHHHhCCCEEEEcCccceEEEecCCHHHHHHHHHHHHhhcCcCccc-cCCcceee
Confidence 4789999999998 899999999999999997 699997 5999999999999999999999 89998765 35566899
Q ss_pred ccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCC-CcccEEEEeecC
Q 008202 498 MACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARP-YMAELGLVGDGP 565 (574)
Q Consensus 498 ~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~-~~aDIGlvG~~~ 565 (574)
++|+|..+|.++++||..++.+|.+++.+.++...|| .||+|+||||||+|+++ +++||||+|+-.
T Consensus 175 vaC~G~~~C~~a~~DT~~la~~L~~~l~~~~~~~~LP--~KfKI~iSGCpN~C~~~v~~aDIGiiG~~r 241 (437)
T 3or1_A 175 ESCLGISRCEFACYDTQLMCYQLTQDYQDELHRPAFP--YKFKFKFDGCPNGCVASMARSDFAVIGTWK 241 (437)
T ss_dssp EECCGGGSCSSCCSCHHHHHHHHHHHTHHHHHSCCSS--SCBCEEEESSTTCTTCHHHHCSEEEEEEES
T ss_pred eccccccccCccccccchhhhhhHhhhhhccccccCC--ceeeEeeccccccccchhhhcccccccccc
Confidence 9999999999999999999999999998888777775 68999999999999999 699999999743
No 18
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=99.91 E-value=7.4e-25 Score=231.80 Aligned_cols=146 Identities=15% Similarity=0.183 Sum_probs=132.8
Q ss_pred Ceeee----cCCcEEEEEEeCCCCcCHHHHHHHHHHHHHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHHC-CCCCCC
Q 008202 415 GWHEQ----GDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQA-GLLLPR 488 (574)
Q Consensus 415 G~~~q----~dG~~~v~v~vp~Grl~~~~l~~La~la~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~-Gl~~~~ 488 (574)
|++.+ ++|.|+|++.+|. +++++||+.|++||++||. .+|||++|||+|.+|++++++++.++|.+. |+..+.
T Consensus 39 Gv~~~~~e~gd~~~~vRv~~p~-~lt~~qlr~ladiA~kyg~G~lrlTtrqni~l~gv~~~~l~~l~~~L~~~~Gl~~g~ 117 (366)
T 3mm5_B 39 GVIKRVAESGDVIYVVRFGTPR-LLSIYTVRELCDIADKYSDGYLRWTSRNNVEFFVTDESKIDDLINEVQERVGFPCGG 117 (366)
T ss_dssp TEEEEEETTSCEEEEEEECCCS-EEEHHHHHHHHHHHHHHSTTEEEECTTSCEEEEESCGGGHHHHHHHHHHHHCCCBCC
T ss_pred CEEEeeccCCCceEEEEECCcc-ccCHHHHHHHHHHHHHhCCCeEEEcCCCeEEEecCCHHHHHHHHHHHHHhcCCCccc
Confidence 66654 3688899999998 9999999999999999987 799999999999999999999999999998 998765
Q ss_pred CCCC-----CccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEee
Q 008202 489 YVDP-----LNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGD 563 (574)
Q Consensus 489 ~~~~-----~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~ 563 (574)
..++ .+|++++|+|+.+|+++++||+.++.+|.++|.+.+....|| .||+|+||||||+|++++.+||||+|.
T Consensus 118 ~~G~~~~~~~~rni~aC~g~~~C~~a~~Dt~~~a~~l~~~l~~~~~~~~LP--~k~kI~vsgC~~~C~~~~~~Dig~~g~ 195 (366)
T 3mm5_B 118 TWDAVKGEYGLSNIVHTQGWIHCHTPAIDASGIVKAVMDELYEYFTDHKLP--AMCRISLACCANMCGAVHASDIAIVGI 195 (366)
T ss_dssp CEETTTTEECCCCCBCCCHHHHCSSCSSCSHHHHHHHHHHTHHHHHSCCBS--SCCCEEEESSTTCSSSGGGSSEEEEEE
T ss_pred ccCCcccccceeeeecCCCccccchHHHHHHHHHHHHHHHHHHhhcccccc--ccceeccccCccccccccccccccccc
Confidence 3144 679999999999999999999999999999999988877775 689999999999999999999999997
No 19
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=97.29 E-value=0.00019 Score=74.14 Aligned_cols=178 Identities=20% Similarity=0.244 Sum_probs=107.2
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhCCCCc---chhhhHHHHHHHhhhhHHHHHHHHHhCCCCCCCCCCCcccccccCCeee
Q 008202 342 LGYVPKEDILYAVKAIVVTQRENGRRDD---RKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHE 418 (574)
Q Consensus 342 l~~v~~eev~~~~~ai~~~~rd~g~R~~---R~~aRlk~li~r~G~e~fr~~ve~~~g~~~~~~~~~~~~~~~~~~G~~~ 418 (574)
.+..+++.+++-+...++...+.|..+- =|..-...+ ++.+|...++ .. .+-|+|+-+
T Consensus 153 yg~~~~eamVeSAl~~~~~~e~~gf~~iviS~K~S~v~~~-----i~ayr~la~~-~d-------------yPLHlGvTE 213 (366)
T 3noy_A 153 YGYPSAEALAESALRWSEKFEKWGFTNYKVSIKGSDVLQN-----VRANLIFAER-TD-------------VPLHIGITE 213 (366)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECSSHHHH-----HHHHHHHHHH-CC-------------CCEEECCSS
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCCeEEEeeecCChHHH-----HHHHHHHHhc-cC-------------CCEEEccCC
Confidence 3445777777777777777777765220 011112221 2233333222 11 223667665
Q ss_pred ecCCcEEEEEEeCCCCcCHHHHHHHHHHHH-HhCCeEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCcccc
Q 008202 419 QGDGGLFCGLHVDNGRIAGKMKKTLREIIE-KYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITA 497 (574)
Q Consensus 419 q~dG~~~v~v~vp~Grl~~~~l~~La~la~-~yg~~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~ 497 (574)
-+.+ ..|.+.+ -..|.-|.. --|..||++-... +.+++.--++.|+.+|+.... ..+
T Consensus 214 AG~~--------~~G~ikS--sigiG~LL~dGIGDTIRVSLt~~------p~~Ev~va~~ILqslglR~~g------~~~ 271 (366)
T 3noy_A 214 AGMG--------TKGIIKS--SVGIGILLYMGIGDTVRVSLTDD------PVVEVETAYEILKSLGLRRRG------VEI 271 (366)
T ss_dssp CCSH--------HHHHHHH--HHHHHHHHHTTCCSEECCCCSSC------HHHHHHHHHHHHHHTTSCCSS------CEE
T ss_pred CCCC--------cceeeeh--HHHHHHHHHhcccceEEEeCCCC------cHHHHHHHHHHHHhcCCCcCC------CEE
Confidence 3321 1223322 223444443 3455677653322 456666677899999997532 258
Q ss_pred ccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCC-CcCCCCCcccEEEEeecCCceEEEE
Q 008202 498 MACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCP-NGCARPYMAELGLVGDGPNSYQVFQ 572 (574)
Q Consensus 498 ~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCp-n~Ca~~~~aDIGlvG~~~g~Y~l~l 572 (574)
+||| +|+....|.+.+ ++++++.+..+ + .+++|+|-||- ||.+....||||+.| ++++..||.
T Consensus 272 ISCP---tCGRt~~dl~~~----~~~ie~~l~~~--~--~~lkVAVMGCvVNGPGEa~~ADiGiag-g~~~~~lf~ 335 (366)
T 3noy_A 272 VACP---TCGRIEVDLPKV----VKEVQEKLSGV--K--TPLKVAVMGCVVNAIGEAREADIGLAC-GRGFAWLFK 335 (366)
T ss_dssp EECC---CCTTCCSCHHHH----HHHHHHHTTTC--C--SCCEEEEESSSHHHHHHTTTCSEEEEE-CSSEEEEEE
T ss_pred EECC---CCCCccccHHHH----HHHHHHHHhCC--C--CCCEEEEEcccccCCchhhhCCEeEec-CCCceEEEE
Confidence 9997 788877776554 56666666543 2 47999999999 999999999999999 678777774
No 20
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=97.18 E-value=0.00039 Score=71.87 Aligned_cols=111 Identities=15% Similarity=0.140 Sum_probs=79.2
Q ss_pred CCHHHHHHHHHHHcCCCCCCCCCCCcceecCCCCCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhh
Q 008202 175 KDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVV 254 (574)
Q Consensus 175 ~~l~~i~~~L~~~~g~t~~a~gd~~RNV~acp~~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~ 254 (574)
+.++-.++-| +++|+-... =++++|| .|....+|.++++.++.+++.
T Consensus 250 ~Ev~va~~IL-qslglR~~g-----~~~ISCP--tCGRt~~dl~~~~~~ie~~l~------------------------- 296 (366)
T 3noy_A 250 VEVETAYEIL-KSLGLRRRG-----VEIVACP--TCGRIEVDLPKVVKEVQEKLS------------------------- 296 (366)
T ss_dssp HHHHHHHHHH-HHTTSCCSS-----CEEEECC--CCTTCCSCHHHHHHHHHHHTT-------------------------
T ss_pred HHHHHHHHHH-HhcCCCcCC-----CEEEECC--CCCCccccHHHHHHHHHHHHh-------------------------
Confidence 3443334433 777643221 3899998 688888899999999987752
Q ss_pred hhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCC-CCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccc
Q 008202 255 KARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPT-DNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLET 333 (574)
Q Consensus 255 ~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~-~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~ 333 (574)
.+|..+||+|-||- |+.+...-+|||+++. . ....||++|..
T Consensus 297 -----------------------~~~~~lkVAVMGCvVNGPGEa~~ADiGiagg-~-----~~~~lf~~Ge~-------- 339 (366)
T 3noy_A 297 -----------------------GVKTPLKVAVMGCVVNAIGEAREADIGLACG-R-----GFAWLFKHGKP-------- 339 (366)
T ss_dssp -----------------------TCCSCCEEEEESSSHHHHHHTTTCSEEEEEC-S-----SEEEEEETTEE--------
T ss_pred -----------------------CCCCCCEEEEEcccccCCchhhhCCEeEecC-C-----CceEEEECCEE--------
Confidence 26678999999997 7788889999999972 1 25789999852
Q ss_pred cccccccccCCCChhHHHHHHHHHHHHHHH
Q 008202 334 TFPRLGEQLGYVPKEDILYAVKAIVVTQRE 363 (574)
Q Consensus 334 t~p~la~~l~~v~~eev~~~~~ai~~~~rd 363 (574)
+..|+.+++++.+..+++-|.+
T Consensus 340 --------v~~v~~~~~~~~l~~~I~~~~~ 361 (366)
T 3noy_A 340 --------IKKVDESEMVDELLKEIQNMEK 361 (366)
T ss_dssp --------EEEEESCHHHHHHHHHHHC---
T ss_pred --------eeecCHHHHHHHHHHHHHHHHH
Confidence 2247888998888888876543
No 21
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*
Probab=95.27 E-value=0.021 Score=60.04 Aligned_cols=130 Identities=21% Similarity=0.282 Sum_probs=80.4
Q ss_pred ccCCeeeecCCcEEEEEEeCCCCcCHHHHHHHHHHHHH-hCCeEEEccCCcEEEecCCc----CCHHHHHHHHHHCCCCC
Q 008202 412 SHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEK-YNLNVRITPNQNIILCDIRK----AWKRPITTALAQAGLLL 486 (574)
Q Consensus 412 ~~~G~~~q~dG~~~v~v~vp~Grl~~~~l~~La~la~~-yg~~irlT~~Qnlil~~I~~----~~~~~l~~~L~~~Gl~~ 486 (574)
-|+|+.+-+.+ ..|.+.+. ..|.-|..+ -|..||++=. .-+. +++.--.+.|+.+||..
T Consensus 226 LHLGvTEAG~~--------~~G~IKSa--igiG~LL~~GIGDTIRVSLT------~dP~e~~~~EV~va~~ILqslglR~ 289 (406)
T 4g9p_A 226 LHLGLTEAGMG--------VKGIVASA--AALAPLLLEGIGDTIRVSLT------PSPKEPRTKEVEVAQEILQALGLRA 289 (406)
T ss_dssp BEECCTTCBSH--------HHHHHHHH--HHHHHHHHTTCCSEEECCBC------CCTTSCTTHHHHHHHHHHHHTTSCC
T ss_pred ceeeeecCCCc--------ccceechH--HHHHHHHhccCchhEEeecc------CCCCcccHHHHHHHHHHHHHhCCcc
Confidence 47787665543 23454332 233344333 3446886522 1122 35667789999999975
Q ss_pred CCCCCCCccccccCCCCCCCccchhHHHh-hHHHHHHHHHHHHHhcC--CCCCCceEEEEecC-CCcCCCCCcccEEEEe
Q 008202 487 PRYVDPLNITAMACPSLPLCPLAITEAER-GIPDILKRIRAVFEKVG--LKYNESVVIRVTGC-PNGCARPYMAELGLVG 562 (574)
Q Consensus 487 ~~~~~~~~r~~~AC~G~~~C~~al~et~~-~a~~l~~~l~~~l~~~g--l~~~~~ikI~iSGC-pn~Ca~~~~aDIGlvG 562 (574)
.. -.++||| +|+....|... ++.++.++|++.+.... .+...+++|+|=|| -||=+....||||+.|
T Consensus 290 ~~------~~iiSCP---tCGRt~~d~~~~la~~v~~~l~~~~~~~~~~~~~~~~l~VAVMGCvVNGPGEa~~ADiGi~~ 360 (406)
T 4g9p_A 290 FA------PEVTSCP---GCGRTTSTFFQELAEEVSRRLKERLPEWRARYPGVEELKVAVMGCVVNGPGESKHAHIGISL 360 (406)
T ss_dssp CS------CEEEECC---CCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGCEEEEESSTTTHHHHHHHSSEEEEC
T ss_pred cC------CCcccCC---CCCcCcchHHHHHHHHHHHHHhhhhhhhhhccCCCCCCEEEEECCcccCcchhhhcCcCccc
Confidence 32 3589997 68877666533 55555566665544321 22224799999999 6999999999999986
Q ss_pred ecCC
Q 008202 563 DGPN 566 (574)
Q Consensus 563 ~~~g 566 (574)
.+.|
T Consensus 361 ~G~G 364 (406)
T 4g9p_A 361 PGAG 364 (406)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 4443
No 22
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*
Probab=91.25 E-value=0.16 Score=53.33 Aligned_cols=66 Identities=23% Similarity=0.242 Sum_probs=45.9
Q ss_pred CceEEEEEcCCCC-CcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccCCCChhHHHHHHHHHHH
Q 008202 281 RKFKVAVTVPTDN-SVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVV 359 (574)
Q Consensus 281 rKfkI~isgc~~~-c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~~v~~eev~~~~~ai~~ 359 (574)
..+||+|=||-=| -+...-+|||+.+... |+...--||+.|.. +..|+.+++++.+..+++
T Consensus 334 ~~l~VAVMGCvVNGPGEa~~ADiGi~~~G~--G~~~~~~lf~~G~~----------------~~~v~~~~iv~~l~~~i~ 395 (406)
T 4g9p_A 334 EELKVAVMGCVVNGPGESKHAHIGISLPGA--GEEPKAPVYADGKL----------------LTILKGEGIAEEFLRLVE 395 (406)
T ss_dssp GGCEEEEESSTTTHHHHHHHSSEEEECCCT--TSCSEEEEEETTEE----------------EEEEESSCHHHHHHHHHH
T ss_pred CCCEEEEECCcccCcchhhhcCcCcccCCC--CCCCeeeEEECCEE----------------EEecCHHHHHHHHHHHHH
Confidence 3589999999544 5567789999985332 32233568887642 224788889888888888
Q ss_pred HHHHh
Q 008202 360 TQREN 364 (574)
Q Consensus 360 ~~rd~ 364 (574)
-|-+.
T Consensus 396 ~~~~~ 400 (406)
T 4g9p_A 396 DYVKT 400 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 23
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=21.64 E-value=1.5e+02 Score=27.26 Aligned_cols=95 Identities=13% Similarity=0.253 Sum_probs=53.9
Q ss_pred CCcCHHHHHHHHHHHHHhCCeEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCC-ccccccCCCCCCCccchh
Q 008202 433 GRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPL-NITAMACPSLPLCPLAIT 511 (574)
Q Consensus 433 Grl~~~~l~~La~la~~yg~~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~-~r~~~AC~G~~~C~~al~ 511 (574)
|.|+.+.+..+|+.. +++..++..+. -|..-....|. ...+.-|.|. .|...
T Consensus 39 G~l~~~~~~~iA~~l------------------~l~~~~V~~Va------tFY~~f~~~P~gk~~I~VC~gt-~C~~~-- 91 (181)
T 3i9v_2 39 GWIRPERIEEIARLV------------------GTTPTEVMGVA------SFYSYYQFVPTGKYHLQVCATL-SCKLA-- 91 (181)
T ss_dssp SSCCHHHHHHHHHHH------------------TSCHHHHHHHH------TTCSSCCSSCCCSEEEEEECSH-HHHTT--
T ss_pred CCCCHHHHHHHHHHh------------------CcCHHHHHHHH------hHHhhcCCCCCCCEEEEECCCc-hhhhc--
Confidence 666777666666642 35555444433 23322222222 2457789876 57542
Q ss_pred HHHhhHHHHHHHHHHHHHh-cC-CCCCCceEEEEecCCCcCCCCCcccE
Q 008202 512 EAERGIPDILKRIRAVFEK-VG-LKYNESVVIRVTGCPNGCARPYMAEL 558 (574)
Q Consensus 512 et~~~a~~l~~~l~~~l~~-~g-l~~~~~ikI~iSGCpn~Ca~~~~aDI 558 (574)
.+.++.+.|.+.+.. .| ...+..+++.-+||--.|+..-+-.|
T Consensus 92 ----Ga~~i~~~l~~~L~i~~gett~Dg~~tl~~~~ClG~C~~gPvv~V 136 (181)
T 3i9v_2 92 ----GAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTAPVIQV 136 (181)
T ss_dssp ----THHHHHHHHHHHHTCCTTCCCTTSCEEEEEESCCSCGGGCSCEEC
T ss_pred ----CHHHHHHHHHHHhCcCCCCcCCCCcEEEEEcCCCCccCCCCEEEE
Confidence 234456677666642 11 22346799999999999997654333
No 24
>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A
Probab=21.31 E-value=1.2e+02 Score=27.08 Aligned_cols=111 Identities=14% Similarity=0.245 Sum_probs=57.9
Q ss_pred EEEEEEeCCCCcCHHHHHHHHHHHHHhCC---eEEEccCCcEEE-----ecCCcCCHHHHHHHHHHC--CCCCCCCCCCC
Q 008202 424 LFCGLHVDNGRIAGKMKKTLREIIEKYNL---NVRITPNQNIIL-----CDIRKAWKRPITTALAQA--GLLLPRYVDPL 493 (574)
Q Consensus 424 ~~v~v~vp~Grl~~~~l~~La~la~~yg~---~irlT~~Qnlil-----~~I~~~~~~~l~~~L~~~--Gl~~~~~~~~~ 493 (574)
+++.+.+| .+....|.++.+.+.. ..+.++-+|+=| -.+++++++++.+.|++. +... . .+
T Consensus 3 ~Fial~~p-----~~~~~~l~~~~~~l~~~~~~~~~v~~~~lHiTL~flg~~~~~~~~~l~~~l~~~~~~~~p---f-~l 73 (184)
T 1vgj_A 3 AFIAIDVN-----ESVRDSLVRAQDYIGSKEAKIKFVERENLHITLKFLGEITEEQAEEIKNILKKIAEKYKK---H-EV 73 (184)
T ss_dssp EEEEEECC-----HHHHHHHHHHHHHHCSSSEEEEECCGGGCEEEEEEEESCCHHHHHHHHHHHHHHHTTSBC---E-EE
T ss_pred EEEEEcCC-----HHHHHHHHHHHHHHhhcCCCcEecCccccEEEEEeecCCCHHHHHHHHHHHHHHHccCCC---e-EE
Confidence 45666555 4566677777777653 466665555422 246777888888888765 3211 0 01
Q ss_pred ccccccCCCCC---CCc-cchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEe
Q 008202 494 NITAMACPSLP---LCP-LAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVT 544 (574)
Q Consensus 494 ~r~~~AC~G~~---~C~-~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iS 544 (574)
...-+.|-+.+ ..= +++.++ ..+..|.+.+.+.+...|++.+.+++=|||
T Consensus 74 ~l~g~g~F~~~~~p~vl~~~v~~~-~~L~~L~~~l~~~l~~~g~~~~~~f~PHiT 127 (184)
T 1vgj_A 74 KVKGIGVFPNPNYIRVIWAGIEND-EIIREMAREIEDELAKLGFKKEGNFVAHIT 127 (184)
T ss_dssp EEEEEEEEECSSSEEEEEEEEETC-HHHHHHHHHHHHHHHTTTCCCCCCCCCEEE
T ss_pred EEeeEeeCCCCCCCcEEEEEecCC-HHHHHHHHHHHHHHHHcCCCCCCCccceEE
Confidence 01111121111 000 122222 335567788888887777653225555554
No 25
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=21.01 E-value=95 Score=23.91 Aligned_cols=46 Identities=7% Similarity=0.081 Sum_probs=27.6
Q ss_pred EEEEEcCCccccHHHHHHHHH-----HHHHhCCCeEEcCCCCcEEEcCCCcCCHH
Q 008202 129 MLRTKNPCGKVSNQLYLTMDD-----LADQFGIGTLRLTTRQTFQLHGVLKKDLK 178 (574)
Q Consensus 129 mvRiripgG~lt~~ql~~la~-----iA~~yG~g~i~lTtRQniqL~gI~~~~l~ 178 (574)
+++|.+..|++|.+|.+.|.+ +++.+|... .+--+.|+.+..++.-
T Consensus 2 ~I~I~l~~Grls~eqk~~L~~~l~~~l~~~lgip~----~~v~V~i~e~~~~~w~ 52 (76)
T 1gyx_A 2 HIDIKCFPRELDEQQKAALAADITDVIIRHLNSKD----SSISIALQQIQPESWQ 52 (76)
T ss_dssp EEEEEESCCCCCHHHHHHHHHHHHHHHHHHHTCCG----GGCEEEEEECCGGGHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHhCcCC----ceEEEEEEEeChHHEE
Confidence 578888889999999877654 233344322 1234555555555543
No 26
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=20.78 E-value=1.2e+02 Score=24.44 Aligned_cols=53 Identities=21% Similarity=0.219 Sum_probs=41.9
Q ss_pred EeCCCCcCHHHHHHHHHHHHHhCC---e--EEEccCCcEEEecCCcCCHHHHHHHHHH
Q 008202 429 HVDNGRIAGKMKKTLREIIEKYNL---N--VRITPNQNIILCDIRKAWKRPITTALAQ 481 (574)
Q Consensus 429 ~vp~Grl~~~~l~~La~la~~yg~---~--irlT~~Qnlil~~I~~~~~~~l~~~L~~ 481 (574)
.+|.|-+.+=+-.-...|-..|-. . ||..+..+|-+.|...++.+.|.+.|++
T Consensus 12 ~lp~ga~~aL~~EL~kRl~~~fpd~~~~V~Vr~~s~n~lsV~g~~k~dKe~i~eiLqE 69 (81)
T 1ghh_A 12 PLPAGAIDALAGELSRRIQYAFPDNEGHVSVRYAAANNLSVIGATKEDKQRISEILQE 69 (81)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHCSSSCCEEEEEEESSCEEEEESCCHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHhhCCCCCceEEEeecCCCceeecCCChhHHHHHHHHHHH
Confidence 457777777666666777788864 3 7888899999999988899999998876
Done!