Query 008203
Match_columns 574
No_of_seqs 259 out of 1124
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 20:36:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008203.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008203hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eay_A Sentrin-specific protea 100.0 2.2E-49 7.6E-54 410.2 22.1 238 305-557 19-318 (323)
2 1th0_A SMT3-, sentrin-specific 100.0 3.5E-41 1.2E-45 334.7 22.9 217 288-550 2-221 (226)
3 2xph_A Sentrin-specific protea 100.0 6.2E-41 2.1E-45 335.4 23.3 219 286-551 12-234 (238)
4 1euv_A ULP1 protease; SUMO hyd 100.0 1.3E-39 4.3E-44 322.5 22.1 206 288-552 4-218 (221)
5 2bkr_A Sentrin-specific protea 100.0 5E-39 1.7E-43 316.0 15.8 193 317-554 9-211 (212)
6 2oix_A Xanthomonas outer prote 100.0 8.5E-34 2.9E-38 274.0 11.1 180 331-552 1-181 (186)
7 4ekf_A Adenain; alpha and beta 91.2 4.7 0.00016 38.3 14.0 81 412-515 52-136 (204)
8 3v1a_A Computational design, M 27.3 62 0.0021 23.9 3.6 43 64-106 2-45 (48)
9 3iv1_A Tumor susceptibility ge 21.8 44 0.0015 27.2 2.2 41 66-106 14-57 (78)
10 3j21_W 50S ribosomal protein L 21.6 36 0.0012 27.2 1.6 50 60-109 6-63 (72)
No 1
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.2e-49 Score=410.23 Aligned_cols=238 Identities=27% Similarity=0.544 Sum_probs=194.9
Q ss_pred cCeeecCCCCCCCceEEecchhcccCCCCccCHHHHHHHHHHHHHhcCCCCCCCCceEEEchhhHHHHHHhhhcC--CCC
Q 008203 305 DAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHK--GGD 382 (574)
Q Consensus 305 ~~~i~yP~~~~~~~i~Lt~~DL~~L~~~~WLND~IInfYl~~L~~~~~~~~~~~~~~~~fnTfFy~kL~~~~~~k--g~d 382 (574)
...|+||+++++++++|+.+||.||.+++||||+|||||++||..+... .....++|+||||||++|....... +..
T Consensus 19 ~~~~~yP~~~~k~~i~it~~Dl~~L~~~~wLND~IInFyl~~L~~e~~~-~~~~~r~h~FnSFFy~kL~~~~~~~~~~~~ 97 (323)
T 3eay_A 19 QKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKAS-DELVERSHIFSSFFYKCLTRKENNLTEDNP 97 (323)
T ss_dssp CEEEEESCTTSSSCEEEEHHHHHTTSTTCCCCHHHHHHHHHHHHHHTSC-HHHHHTEEECCTHHHHHHSCC--------C
T ss_pred ceeEEeCCCCCCCceEEEHHHHHhhCCCCCcCHHHHHHHHHHHHhhhcc-ccccCcEEEEchHHHHHHHhcccccccccc
Confidence 3679999999999999999999999999999999999999999755432 1234689999999999998632110 000
Q ss_pred ----chhhhHHHHhhhccccCCCCcEEEEEeecCCceEEEEEEcCCCCC-------------------------------
Q 008203 383 ----KDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKED------------------------------- 427 (574)
Q Consensus 383 ----~~~~~~~vkrWtk~~nifekd~IfIPIn~~~HWsLlVI~~~~k~~------------------------------- 427 (574)
...+|.+|+|||+++|||++++||||||.+.||+|+|||+|.++.
T Consensus 98 ~~s~~~~~y~~VrrWtrkvdlf~kD~I~IPIn~~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 177 (323)
T 3eay_A 98 NLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLR 177 (323)
T ss_dssp CSCHHHHHHTTSGGGGTTCCGGGCSEEEEEEEETTEEEEEEEECTTCSSCBCC---------------------------
T ss_pred cchhHHHHHHHHHHHHhhcccccCCEEEEecCCCCceEEEEEecCCcccccccccccccccccccccccccccccccccc
Confidence 124689999999999999999999999999999999999996420
Q ss_pred -------------------------CCCCeEEEecCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCCCCcccccccccCC
Q 008203 428 -------------------------ESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLP 482 (574)
Q Consensus 428 -------------------------~~~p~I~~lDSL~~~~~k~i~~~L~~yL~~e~~~~~~~~~~~d~~~~~~~W~~~p 482 (574)
.+.|+|+|||||++++...++..|+.||..||+.+.+.. ..|+...|.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~~Lr~YL~~E~~~k~~~~----~~f~~~~~~--- 250 (323)
T 3eay_A 178 TTSTLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTH----RQFSKTNMV--- 250 (323)
T ss_dssp ----------------------CCCCBCSEEEEECSSCCSSHHHHHHHHHHHHHHHHHHHHSSC----CCCCTTTSC---
T ss_pred cccccccccccccccccccccccccCCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHhhcCCC----cCCCHhHce---
Confidence 135799999999998778899999999999999875432 223333443
Q ss_pred ccccccCCCcCCCCCCCChhHHHHHHHHHHHhcCCcccchhhhhcccccCCCHHHHHHHHHHHHHHHHHHhhhhc
Q 008203 483 RRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIRNLLKKQFQISS 557 (574)
Q Consensus 483 ~~i~~~~~~vPqQ~Ng~DCGVFVL~f~e~~~~~~p~~ftq~dm~~f~~~wf~p~~i~~~R~~I~~lIl~L~~~~~ 557 (574)
...+.+|||.|++|||||||+||++|+.+.|.+|++ ++....||++++|..+|..|++||++|...+.
T Consensus 251 ----~~~~~~P~Q~N~~DCGvfvl~~~e~~~~~~~~~f~~---~~~~~~wf~~~~i~~kR~ei~~LI~~L~~~q~ 318 (323)
T 3eay_A 251 ----DLCPKVPKQDNSSDCGVYLLQYVESFFKDPIVNFEL---PIHLEKWFPRHVIKTKREDIRELILKLHLQQQ 318 (323)
T ss_dssp ----EECCBCCCCCSTTCHHHHHHHHHHHHHHSCCCCCCS---SCBCTTSSCHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred ----eccCCCCCcCCCCcHHHHHHHHHHHHHhCCcccccc---ccccccCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 235679999999999999999999999998888864 45567899999999999999999999987764
No 2
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=100.00 E-value=3.5e-41 Score=334.65 Aligned_cols=217 Identities=28% Similarity=0.483 Sum_probs=175.3
Q ss_pred CCccchHhHHHHHHhhcc---CeeecCCCCCCCceEEecchhcccCCCCccCHHHHHHHHHHHHHhcCCCCCCCCceEEE
Q 008203 288 LHIETTEQADEFAECMID---AKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFF 364 (574)
Q Consensus 288 ~~~~~~e~~~e~~~~~~~---~~i~yP~~~~~~~i~Lt~~DL~~L~~~~WLND~IInfYl~~L~~~~~~~~~~~~~~~~f 364 (574)
++|.+.|+..+|...|.. ..+.. ..+++.|+.+|+.+|.+++||||+|||||++||.++.... ..+++|+|
T Consensus 2 ~~~lt~~~~~~~~~~l~~~~~~~~~~----~~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~--~~~~~~~f 75 (226)
T 1th0_A 2 LLELTEDMEKEISNALGHGPQDEILS----SAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQ--GYPALHVF 75 (226)
T ss_dssp CCCCCHHHHHHHHHHHSSSCTTCEEE----EETTEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHHH--TCCCEEEC
T ss_pred CCCCCHHHHHHHHHHhccCCccceee----ccCCeEEEHHHHhhcCCCCccChHHHHHHHHHHHHhhhhc--cCCcEEEE
Confidence 567788888888887742 12221 2468999999999999999999999999999998765321 24689999
Q ss_pred chhhHHHHHHhhhcCCCCchhhhHHHHhhhccccCCCCcEEEEEeecCCceEEEEEEcCCCCCCCCCeEEEecCCCCCCc
Q 008203 365 NTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHCS 444 (574)
Q Consensus 365 nTfFy~kL~~~~~~kg~d~~~~~~~vkrWtk~~nifekd~IfIPIn~~~HWsLlVI~~~~k~~~~~p~I~~lDSL~~~~~ 444 (574)
|||||++|... .|.+|++|++++++|++++||||||.+.||+|+||+++.+ +|+|||||++.+
T Consensus 76 ~s~f~~~l~~~----------~~~~v~~w~~~~~l~~~~~i~iPin~~~HW~l~vi~~~~~------~i~~~DSl~~~~- 138 (226)
T 1th0_A 76 STFFYPKLKSG----------GYQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVIDLRKK------CLKYLDSMGQKG- 138 (226)
T ss_dssp CTTHHHHHHHH----------TGGGTGGGGTTCCGGGSSEEEEEEEETTEEEEEEEETTTT------EEEEECTTCCCC-
T ss_pred eHHHHHHhhhc----------ccHHHHHHhhcCCcccCCEEEEeEEeCcEEEEEEEEcCCC------ceEEEcCCCCCc-
Confidence 99999999863 3678999999999999999999999999999999999987 999999999876
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCccccccCCCcCCCCCCCChhHHHHHHHHHHHhcCCcccchhh
Q 008203 445 LSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKD 524 (574)
Q Consensus 445 k~i~~~L~~yL~~e~~~~~~~~~~~d~~~~~~~W~~~p~~i~~~~~~vPqQ~Ng~DCGVFVL~f~e~~~~~~p~~ftq~d 524 (574)
..++..|..||..++..+.+ .+ +....|+.. .+...++|||.||+|||||||+||++|+.+.|..|++++
T Consensus 139 ~~~~~~l~~~l~~e~~~k~~----~~--~~~~~w~~~----~~~~~~~PqQ~Ng~DCGvfvl~~~~~~~~~~~~~f~q~d 208 (226)
T 1th0_A 139 HRICEILLQYLQDESKTKRN----SD--LNLLEWTHH----SMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQ 208 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHTS----CC--CCGGGCEEE----ECCTTTSCCCCSSSCHHHHHHHHHHHHTTTCCCCCCGGG
T ss_pred hHHHHHHHHHHHHHHHHhcC----CC--CCcccceec----cccCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCccChhh
Confidence 46889999999998865432 12 234567642 123568999999999999999999999999888877766
Q ss_pred hhcccccCCCHHHHHHHHHHHHHHHH
Q 008203 525 LAMFGKRWFRPEEASGLRIKIRNLLK 550 (574)
Q Consensus 525 m~~f~~~wf~p~~i~~~R~~I~~lIl 550 (574)
|+ .+|++|...|+
T Consensus 209 m~-------------~~R~~~~~ei~ 221 (226)
T 1th0_A 209 MP-------------LFRKKMVWEIL 221 (226)
T ss_dssp HH-------------HHHHHHHHHHH
T ss_pred HH-------------HHHHHHHHHHH
Confidence 65 45666665554
No 3
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=100.00 E-value=6.2e-41 Score=335.42 Aligned_cols=219 Identities=25% Similarity=0.423 Sum_probs=178.1
Q ss_pred CCCCccchHhHHHHHHhhccC----eeecCCCCCCCceEEecchhcccCCCCccCHHHHHHHHHHHHHhcCCCCCCCCce
Q 008203 286 GSLHIETTEQADEFAECMIDA----KIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDC 361 (574)
Q Consensus 286 ~~~~~~~~e~~~e~~~~~~~~----~i~yP~~~~~~~i~Lt~~DL~~L~~~~WLND~IInfYl~~L~~~~~~~~~~~~~~ 361 (574)
..+++.+.|...+|...+... .+.+ .+++.|+.+|+.+|.+++||||+|||||++||.++.... ..+++
T Consensus 12 ~~~~~lt~e~~~~v~~~l~~~~~~~vl~~-----~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~--~~~~~ 84 (238)
T 2xph_A 12 DEFPEITEEMEKEIKNVFRNGNQDEVLSE-----AFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEK--GLPSV 84 (238)
T ss_dssp CCCCCCCHHHHHHHHHHSSSSCTTCCCEE-----ETTEEECHHHHHTTSTTCCCCHHHHHHHHHHHHHHTTST--TSCCE
T ss_pred cCCCCCCHHHHHHHHHHHcCCChhheeec-----CCCcEEeHHHHhhcCCCCccCHHHHHHHHHHHHHhhhhc--CCCce
Confidence 447788888888888887531 2222 468999999999999999999999999999998876432 24689
Q ss_pred EEEchhhHHHHHHhhhcCCCCchhhhHHHHhhhccccCCCCcEEEEEeecCCceEEEEEEcCCCCCCCCCeEEEecCCCC
Q 008203 362 HFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKL 441 (574)
Q Consensus 362 ~~fnTfFy~kL~~~~~~kg~d~~~~~~~vkrWtk~~nifekd~IfIPIn~~~HWsLlVI~~~~k~~~~~p~I~~lDSL~~ 441 (574)
|+||||||++|... +|.+|++|++++++|++++||||||.+.||+|+||+++.+ +|+|||||++
T Consensus 85 ~~f~sff~~~l~~~----------~~~~v~~w~~~~~l~~~~~i~iPin~~~HW~L~vi~~~~~------~i~~~DSl~~ 148 (238)
T 2xph_A 85 HAFNTFFFTKLKTA----------GYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKK------NITYYDSMGG 148 (238)
T ss_dssp EECCTTTTHHHHTT----------CHHHHTTTTTTCCGGGSSEEEEEEEETTEEEEEEEETTTT------EEEEECTTCC
T ss_pred eeeecHHHHHhhhc----------ccHHHHHHhccCCcccCCEEEEcccCCCceEEEEEEcccc------eEEEeecccC
Confidence 99999999999752 3788999999999999999999999999999999999988 9999999998
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCccccccCCCcCCCCCCCChhHHHHHHHHHHHhcCCcccc
Q 008203 442 HCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLK 521 (574)
Q Consensus 442 ~~~k~i~~~L~~yL~~e~~~~~~~~~~~d~~~~~~~W~~~p~~i~~~~~~vPqQ~Ng~DCGVFVL~f~e~~~~~~p~~ft 521 (574)
.+ ...+..|..||..++..+.+. .+....|+.. .....++|||.||+|||||||+||++|+.+.|..|+
T Consensus 149 ~~-~~~~~~l~~~L~~e~~~k~~~------~~~~~~w~~~----~~~~~~~PqQ~Ng~DCGvfvl~~~e~~~~~~~~~f~ 217 (238)
T 2xph_A 149 IN-NEACRILLQYLKQESIDKKRK------EFDTNGWQLF----SKKSQEIPQQMNGSDCGMFACKYADCITKDRPINFT 217 (238)
T ss_dssp CC-HHHHHHHHHHHHHHHHHHHCS------CCCCTTCEEE----ECCSSSSCCCSBGGGHHHHHHHHHHHHHTTCCCCCC
T ss_pred CC-HHHHHHHHHHHHHHHHHhcCC------CcCcccceec----ccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCcC
Confidence 76 457788999999998765332 1223567642 123578999999999999999999999999887777
Q ss_pred hhhhhcccccCCCHHHHHHHHHHHHHHHHH
Q 008203 522 KKDLAMFGKRWFRPEEASGLRIKIRNLLKK 551 (574)
Q Consensus 522 q~dm~~f~~~wf~p~~i~~~R~~I~~lIl~ 551 (574)
+++|+ .+|++|...|+.
T Consensus 218 q~dm~-------------~~R~~m~~eil~ 234 (238)
T 2xph_A 218 QQHMP-------------YFRKRMVWEILH 234 (238)
T ss_dssp GGGHH-------------HHHHHHHHHHHH
T ss_pred hhhHH-------------HHHHHHHHHHHh
Confidence 76654 566666665553
No 4
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=100.00 E-value=1.3e-39 Score=322.52 Aligned_cols=206 Identities=26% Similarity=0.455 Sum_probs=168.8
Q ss_pred CCccchHhHHHHHHhhccC---eeecCCCCCCCceEEecchhcccCCCCccCHHHHHHHHHHHHHhcCCCCCCCCceEEE
Q 008203 288 LHIETTEQADEFAECMIDA---KIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFF 364 (574)
Q Consensus 288 ~~~~~~e~~~e~~~~~~~~---~i~yP~~~~~~~i~Lt~~DL~~L~~~~WLND~IInfYl~~L~~~~~~~~~~~~~~~~f 364 (574)
+|+++.++..+|.+.|... .++ ..+++.|+.+|+.+|.+++||||+|||||++||.... +++|+|
T Consensus 4 ~~~l~~~~~~~v~~~l~~~~~~~l~-----~~~~i~i~~~Dl~~L~~~~wLND~vI~fy~~~l~~~~-------~~~~~f 71 (221)
T 1euv_A 4 VPELNEKDDDQVQKALASRENTQLM-----NRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKST-------PNTVAF 71 (221)
T ss_dssp SCCCCHHHHHHHHHHHTCSSCCEEE-----EETTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHHS-------TTEEEC
T ss_pred CCCCCHHHHHHHHHHhcCCCCeeee-----cCCCeEEEHHHHhhhcCCCCCCHHHHHHHHHHHHhcC-------CCeEEE
Confidence 5678888888888887632 222 3578999999999999999999999999999998763 479999
Q ss_pred chhhHHHHHHhhhcCCCCchhhhHHHHhhhc--cccCCCCcEEEEEeec-CCceEEEEEEcCCCCCCCCCeEEEecCCCC
Q 008203 365 NTYFYSKLKEAVSHKGGDKDSFFIKFRRWWK--GVNIFQKSYVLIPIHE-DVHWSLVIICIPDKEDESGPIILHLDSLKL 441 (574)
Q Consensus 365 nTfFy~kL~~~~~~kg~d~~~~~~~vkrWtk--~~nifekd~IfIPIn~-~~HWsLlVI~~~~k~~~~~p~I~~lDSL~~ 441 (574)
|||||++|... +|..|++|++ ++++|++++||||||. +.||+|+||+++.+ +|+|||||+.
T Consensus 72 ~s~f~~~l~~~----------~~~~v~rw~~~~~~~~~~~~~i~iPin~~~~HW~l~vi~~~~~------~i~~~DSl~~ 135 (221)
T 1euv_A 72 NSFFYTNLSER----------GYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKK------TIGYVDSLSN 135 (221)
T ss_dssp CTHHHHHHHHH----------TGGGTTTTTGGGTSCGGGCSEEEEEEEETTTEEEEEEEETTTT------EEEEECSSCC
T ss_pred EcHHHHHhhhh----------ccHHHHHHHHhccCCcccCCEEEEEEEcCCCeEEEEEEEcCCC------EEEEEecCCC
Confidence 99999999863 3778999997 6799999999999998 59999999999988 9999999986
Q ss_pred CCcH---HHHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCccccccCCCcCCCCCCCChhHHHHHHHHHHHhcCCc
Q 008203 442 HCSL---SIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPE 518 (574)
Q Consensus 442 ~~~k---~i~~~L~~yL~~e~~~~~~~~~~~d~~~~~~~W~~~p~~i~~~~~~vPqQ~Ng~DCGVFVL~f~e~~~~~~p~ 518 (574)
.... .+++.|+.||..+++.+. + ..|. +...++|||.||+|||||||+||++++.+.|.
T Consensus 136 ~~~~~~~~i~~~l~~~l~~e~~~~~----~-------~~~~-------~~~~~~PqQ~N~~DCGvfv~~~~~~~~~~~~l 197 (221)
T 1euv_A 136 GPNAMSFAILTDLQKYVMEESKHTI----G-------EDFD-------LIHLDCPQQPNGYDCGIYVCMNTLYGSADAPL 197 (221)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTSSS----C-------TTCE-------EEEECCCCCSSSSTHHHHHHHHHHHHHTTCCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhc----C-------CCce-------EeecCCCCCCCCcCHHHHHHHHHHHHhCCCCC
Confidence 5432 577888999987754321 1 1232 23568999999999999999999999998765
Q ss_pred ccchhhhhcccccCCCHHHHHHHHHHHHHHHHHH
Q 008203 519 RLKKKDLAMFGKRWFRPEEASGLRIKIRNLLKKQ 552 (574)
Q Consensus 519 ~ftq~dm~~f~~~wf~p~~i~~~R~~I~~lIl~L 552 (574)
. |++.++..+|++|.++|+..
T Consensus 198 ~-------------f~~~d~~~~R~~i~~~Il~~ 218 (221)
T 1euv_A 198 D-------------FDYKDAIRMRRFIAHLILTD 218 (221)
T ss_dssp C-------------CCHHHHHHHHHHHHHHHHTT
T ss_pred C-------------cCHHHHHHHHHHHHHHHHhc
Confidence 4 45567778999999998753
No 5
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=100.00 E-value=5e-39 Score=315.97 Aligned_cols=193 Identities=18% Similarity=0.263 Sum_probs=152.2
Q ss_pred CceEEecchhcccCCCCccCHHHHHHHHHHHHHhcCCCCCCCCceEEEc---hhhHHHHHHhhhcCCCCchhhhHHHHhh
Q 008203 317 ESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFN---TYFYSKLKEAVSHKGGDKDSFFIKFRRW 393 (574)
Q Consensus 317 ~~i~Lt~~DL~~L~~~~WLND~IInfYl~~L~~~~~~~~~~~~~~~~fn---TfFy~kL~~~~~~kg~d~~~~~~~vkrW 393 (574)
+++.|+.+|+.+|.+++||||+|||||++||.++...+. ..++|||| ||||..+. .+..|++|
T Consensus 9 ~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~--~~~~~~~~p~~s~f~~~~~------------~~~~v~~~ 74 (212)
T 2bkr_A 9 MDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDS--SDHVSFISPEVTQFIKCTS------------NPAEIAMF 74 (212)
T ss_dssp TTEEEEHHHHHTTSTTSCCBHHHHHHHHHHHHHTTTGGG--TTTEEEECHHHHHHHHHCC------------CHHHHHHH
T ss_pred CCEEEeHHHHhhcCCCCCcCHHHHHHHHHHHHHhhccCC--CCcEEEEChHHHHHHHhCC------------CHHHHHHH
Confidence 689999999999999999999999999999999875432 46799999 89984432 15679999
Q ss_pred hccccCCCCcEEEEEeec-------CCceEEEEEEcCCCCCCCCCeEEEecCCCCCCcHHHHHHHHHHHHHHHHHhhccC
Q 008203 394 WKGVNIFQKSYVLIPIHE-------DVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEV 466 (574)
Q Consensus 394 tk~~nifekd~IfIPIn~-------~~HWsLlVI~~~~k~~~~~p~I~~lDSL~~~~~k~i~~~L~~yL~~e~~~~~~~~ 466 (574)
++++++|++++||||||. +.||+|+||+++.+ +|+|||||++.+.. ....+..+|...+. .+.
T Consensus 75 ~~~~~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~~~~------~i~~~DSl~~~n~~-~~~~l~~~l~~~l~---~~~ 144 (212)
T 2bkr_A 75 LEPLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKN------SFFHYDSHSRSNSV-HAKQVAEKLEAFLG---RKG 144 (212)
T ss_dssp HGGGTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGGT------EEEEECSSTTTTHH-HHHHHHHHHHHHHS---CTT
T ss_pred hcccccccCCEEEEEEecCCCCCCCCCCeEEEEEEecCC------eEEEEeCCCCCCHH-HHHHHHHHHHHHhC---Ccc
Confidence 999999999999999995 79999999999988 99999999987642 33334444443221 110
Q ss_pred CCCCCcccccccccCCccccccCCCcCCCCCCCChhHHHHHHHHHHHhcCCcccchhhhhcccccCCCHHHHHHHHHHHH
Q 008203 467 SPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIR 546 (574)
Q Consensus 467 ~~~d~~~~~~~W~~~p~~i~~~~~~vPqQ~Ng~DCGVFVL~f~e~~~~~~p~~ftq~dm~~f~~~wf~p~~i~~~R~~I~ 546 (574)
..|. +...++|||.||||||||||+||++|+.+.... ..+. ...||++++|..+|++|+
T Consensus 145 ---------~~~~-------~~~~~~PqQ~N~~DCGvfvl~~~~~l~~~~~~~---~~~~--~~~~~~~~~i~~~R~~i~ 203 (212)
T 2bkr_A 145 ---------DKLA-------FVEEKAPAQQNSYDCGMYVICNTEALCQNFFRQ---QTES--LLQLLTPAYITKKRGEWK 203 (212)
T ss_dssp ---------CCCC-------EEECCCCCCSSSSTHHHHHHHHHHHHHHHHHSC---CCCC--HHHHCCHHHHHHHHHHHH
T ss_pred ---------ccce-------EeECCCCCCCCCCcHHHHHHHHHHHHHHHhhhc---Cccc--ccccCCHHHHHHHHHHHH
Confidence 0121 235689999999999999999999999884211 0011 246799999999999999
Q ss_pred HHHHHHhh
Q 008203 547 NLLKKQFQ 554 (574)
Q Consensus 547 ~lIl~L~~ 554 (574)
++|++|.+
T Consensus 204 ~lI~~L~~ 211 (212)
T 2bkr_A 204 DLIATLAK 211 (212)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 99999964
No 6
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=100.00 E-value=8.5e-34 Score=273.96 Aligned_cols=180 Identities=19% Similarity=0.233 Sum_probs=126.4
Q ss_pred CCCccCHHHHHHHHHHHHHhcCCCCCCCCceEEEchhhHHHHHHhhhcCCCCchhhhHHHHhhhccccCCCCcEEEEEee
Q 008203 331 PAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIH 410 (574)
Q Consensus 331 ~~~WLND~IInfYl~~L~~~~~~~~~~~~~~~~fnTfFy~kL~~~~~~kg~d~~~~~~~vkrWtk~~nifekd~IfIPIn 410 (574)
+++||||+|||||++||.++...... ..++|||+++++..+.. . + ...+.++.+|++..++ +++||||||
T Consensus 1 ~~~WLND~iI~fy~~~L~~~~~~~~~-~~~v~f~~p~~~~~l~~----~--~-~~~~~~~~~~~~~~~~--~~~i~iPin 70 (186)
T 2oix_A 1 ATSWLLDGHLRAYTDDLARRLRGEPN-AHLLHFADSQVVTMLSS----A--D-PDQQARAQRLLAGDDI--PPIVFLPIN 70 (186)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTTTSTT-GGGEEECCHHHHHHTTC----S--S-HHHHHHHHHHHHSTTS--CSEEEEEEE
T ss_pred CCCCcChHHHHHHHHHHHHHhhhccC-cceEEEECHHHHHHHHh----C--C-HHHHHHHHHHcccccc--cCEEEEEEe
Confidence 47899999999999999998754321 24599999876554432 1 1 1346788888877665 999999999
Q ss_pred c-CCceEEEEEEcCCCCCCCCCeEEEecCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCccccccC
Q 008203 411 E-DVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRI 489 (574)
Q Consensus 411 ~-~~HWsLlVI~~~~k~~~~~p~I~~lDSL~~~~~k~i~~~L~~yL~~e~~~~~~~~~~~d~~~~~~~W~~~p~~i~~~~ 489 (574)
. ++||+|+||+.+.+ .-|+|+|||||++.+.. ...+...|.. .+... +. .+..
T Consensus 71 ~~~~HWsLlvi~~~~~---~~~~~~~~DSl~~~~~~--~~~l~~~l~~---~l~~~------------~~------~~~~ 124 (186)
T 2oix_A 71 QPNAHWSLLVVDRRNK---DAVAAYHYDSMAQKDPQ--QRYLADMAAY---HLGLD------------YQ------QTHE 124 (186)
T ss_dssp ETTTEEEEEEEECSST---TSCEEEEECCCSSCCHH--HHHHHHHHHH---HTTCC------------GG------GCEE
T ss_pred CCCCccEEEEEECCCC---eeeeeEEEcCCCCCCHH--HHHHHHHHHH---HhCCC------------cc------cccc
Confidence 8 89999999999987 22345999999985432 2222222322 11110 00 1235
Q ss_pred CCcCCCCCCCChhHHHHHHHHHHHhcCCcccchhhhhcccccCCCHHHHHHHHHHHHHHHHHH
Q 008203 490 IPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIRNLLKKQ 552 (574)
Q Consensus 490 ~~vPqQ~Ng~DCGVFVL~f~e~~~~~~p~~ftq~dm~~f~~~wf~p~~i~~~R~~I~~lIl~L 552 (574)
.++|||.||||||||||+||++++.+... ... ....||++++|..+|+.|+++|.++
T Consensus 125 ~~~PqQ~Ng~DCGvfv~~~~~~l~~~~~~----~~~--~~~~~~~~~~i~~~R~~i~~lI~~~ 181 (186)
T 2oix_A 125 MPIAIQSDGYSAGDHVLTGIEVLAHRVLD----GTF--DYAGGRDLTDIEPDRGLIRDRLAQA 181 (186)
T ss_dssp ECBCCCC--CCHHHHHHHHHHHHHHHHHH----TCT--TSTTTTCBTTCCCCHHHHHHHHHCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhh----cCc--cCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999876211 001 2235788999999999999999976
No 7
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=91.18 E-value=4.7 Score=38.33 Aligned_cols=81 Identities=20% Similarity=0.268 Sum_probs=49.6
Q ss_pred CCceEEEEEEcCCCCCCCCCeEEEecCCCCCCcHHHHHHHHHHHHHHHHHhhcc-CC--CCCCcccccccccCCcccccc
Q 008203 412 DVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQE-VS--PSDLPIAERIWQHLPRRIDDR 488 (574)
Q Consensus 412 ~~HWsLlVI~~~~k~~~~~p~I~~lDSL~~~~~k~i~~~L~~yL~~e~~~~~~~-~~--~~d~~~~~~~W~~~p~~i~~~ 488 (574)
+.||.-+..+.+.. ++|+||.+|-++.+ + .++-.-++..+-+. .. +.| +.|..+
T Consensus 52 GvHWiA~Aw~P~s~------~~YmFDPfG~sd~~-L----~qiY~F~Y~~llkRSAL~sspd------------RCv~Lv 108 (204)
T 4ekf_A 52 GVHWMAFAWNPRSK------TCYLFEPFGFSDQR-L----KQVYQFEYESLLRRSAIASSPD------------RCITLE 108 (204)
T ss_dssp CCCEEEEEEETTTT------EEEEECTBTTCSHH-H----HHHHHHHHHHHHHHHCC--------------------EEE
T ss_pred ceeEEEeEecCCcc------eEEEeCCCCCCHHH-H----HHHhhhhHHHHHHHHhhcCCCC------------ceeEEE
Confidence 59999999999887 99999999988632 2 22222222222111 00 111 122222
Q ss_pred -CCCcCCCCCCCChhHHHHHHHHHHHhc
Q 008203 489 -IIPVPQQKNDYDCGLFVLFFMERFMEE 515 (574)
Q Consensus 489 -~~~vPqQ~Ng~DCGVFVL~f~e~~~~~ 515 (574)
....-|=.++--||+|.|.|+.+|...
T Consensus 109 kstqsVQcp~SaACGLFC~lFL~aF~~~ 136 (204)
T 4ekf_A 109 KSTQSVQGPNSAAAGLFCCMFLHAFANW 136 (204)
T ss_dssp ECCSBCSCTTCCCHHHHHHHHHHHHHHC
T ss_pred eccccccCcCchhHHHHHHHHHHHHHhC
Confidence 223334467889999999999999886
No 8
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=27.26 E-value=62 Score=23.94 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=34.1
Q ss_pred CchHHHHHHHHhhhhhc-ccccCCCcchHhHHHHHHHHHHHHHH
Q 008203 64 PDQELGVRIARMKDTYS-KVRHCLPDKGKKILATVTRLEKECER 106 (574)
Q Consensus 64 ~D~~L~e~i~r~~~~l~-~~~~~lpD~G~K~~~~i~~~~~E~~r 106 (574)
||..|.|+|-=+++++. .-..|==|-=+-|.+.|..|++|++|
T Consensus 2 ~~dPL~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~~ 45 (48)
T 3v1a_A 2 SGSPLAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEYFQ 45 (48)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHh
Confidence 57799999999999985 33344446677789999999999986
No 9
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=21.82 E-value=44 Score=27.22 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=32.1
Q ss_pred hHHHHHHHHhhhhhc---ccccCCCcchHhHHHHHHHHHHHHHH
Q 008203 66 QELGVRIARMKDTYS---KVRHCLPDKGKKILATVTRLEKECER 106 (574)
Q Consensus 66 ~~L~e~i~r~~~~l~---~~~~~lpD~G~K~~~~i~~~~~E~~r 106 (574)
+.|+|.+.+.+..|. .+..-|-.|+.||..-|.+|++|...
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~ 57 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAE 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 457777777777764 45566889999999999999998765
No 10
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.55 E-value=36 Score=27.19 Aligned_cols=50 Identities=12% Similarity=0.132 Sum_probs=37.2
Q ss_pred cCCCCchHHHHHHHHhhhhhc------cccc--CCCcchHhHHHHHHHHHHHHHHHhh
Q 008203 60 DRQIPDQELGVRIARMKDTYS------KVRH--CLPDKGKKILATVTRLEKECERRRL 109 (574)
Q Consensus 60 ~~~~~D~~L~e~i~r~~~~l~------~~~~--~lpD~G~K~~~~i~~~~~E~~rR~~ 109 (574)
++.+|+.||.+++...+..|- .++. -=|-+=..+|+.|.|+.=.+..|..
T Consensus 6 lr~~s~~EL~~~L~elk~ELf~LR~q~atgq~l~n~~~ir~vRr~IARi~Tvl~er~~ 63 (72)
T 3j21_W 6 IREMSIEEIDAKIRELRLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLTIKKEKLR 63 (72)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999888873 2332 2255556788899999877776665
Done!