BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008204
(574 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 281 DDACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
D LHYAA + ++ K + + G AD+N KD+ GRT LH AA+ E++ +L+SKGA
Sbjct: 69 DGRTPLHYAAKEGHKEIVKLLISKG-ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 341 CSSETTPDGQTAVAICRRMTRRKDYIEATKQG 372
+ + DG+T + + R + KQG
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 281 DDACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
D LHYAA + ++ K + + G AD+N KD+ GRT LH AA+ E++ +L+SKGA
Sbjct: 36 DGRTPLHYAAKEGHKEIVKLLISKG-ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 94
Query: 341 CSSETTPDGQT 351
+ DG+T
Sbjct: 95 DVNAKDSDGRT 105
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSETTPDGQT 351
AD+N D+ GRT LH AA+ E++ +L+SKGA + DG+T
Sbjct: 28 ADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRT 72
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 281 DDACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
D LHYAA + ++ K + + G AD N KD+ GRT LH AA E++ +LLSKGA
Sbjct: 69 DGRTPLHYAAENGHKEIVKLLLSKG-ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 127
Query: 341 CSSETTPDGQTAVAICRRMTRRKDYIEATKQG 372
+ + DG+T + + R + KQG
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 281 DDACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
D LHYAA + ++ K + + G AD N KD+ GRT LH AA E++ +LLSKGA
Sbjct: 36 DGRTPLHYAAENGHKEIVKLLLSKG-ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 94
Query: 341 CSSETTPDGQT 351
+ DG+T
Sbjct: 95 DPNAKDSDGRT 105
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSETTPDGQT 351
AD N D+ GRT LH AA E++ +LLSKGA + DG+T
Sbjct: 28 ADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRT 72
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 281 DDACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
D LH+AA + +V K + + G AD+N KD+ GRT LH AA EV+ +L+SKGA
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLISKG-ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 341 CSSETTPDGQTAVAICRRMTRRKDYIEATKQG 372
+ + DG+T + + R + KQG
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 281 DDACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
D LH+AA + +V K + + G AD+N KD+ GRT LH AA EV+ +L+SKGA
Sbjct: 36 DGRTPLHHAAENGHKEVVKLLISKG-ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 94
Query: 341 CSSETTPDGQT 351
+ DG+T
Sbjct: 95 DVNAKDSDGRT 105
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSETTPDGQT 351
AD+N D+ GRT LH AA EV+ +L+SKGA + DG+T
Sbjct: 28 ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRT 72
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 281 DDACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
D LH AA + +V K + + G AD N KD+ G+T LH+AA EV+ +LLS+GA
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQG-ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 127
Query: 341 CSSETTPDGQTAVAICRRMTRRKDYIEATKQG 372
+ + DG+T + + R + KQG
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 281 DDACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
D LH AA + +V K + + G AD N KD+ G+T LH+AA EV+ +LLS+GA
Sbjct: 36 DGKTPLHLAAENGHKEVVKLLLSQG-ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 94
Query: 341 CSSETTPDGQTAVAICRRMTRRKDYIEATKQGQETN 376
+ DG+T + + ++ QG + N
Sbjct: 95 DPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 130
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSETTPDGQTAVAICRRMTRRKDYI 366
AD+N D+ G+T LH+AA EV+ +LLS+GA + DG+T + + ++
Sbjct: 28 ADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVK 87
Query: 367 EATKQGQETN 376
QG + N
Sbjct: 88 LLLSQGADPN 97
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSET 345
LH AA + +V K + G AD+N KD GRT LH+AAR EV+ +LL GA +
Sbjct: 6 LHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 346 TPDGQTAVAICRRMTRRKDYIEATKQGQETNKD 378
+G+T + + R ++E K E D
Sbjct: 65 DKNGRTPL----HLAARNGHLEVVKLLLEAGAD 93
Score = 45.4 bits (106), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSET 345
LH AA + +V K + G AD+N KD GRT LH+AAR EV+ +LL GA +
Sbjct: 39 LHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 97
Query: 346 TPDGQTAVAICRR 358
+G+T + + R
Sbjct: 98 DKNGRTPLHLAAR 110
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
LH AA + +V K + G AD+N KD GRT LH+AAR EV+ +LL GA
Sbjct: 72 LHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 32.3 bits (72), Expect = 0.68, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 316 GRTVLHVAARRKEPEVMVVLLSKGACSSETTPDGQTAVAICRRMTRRKDYIEATKQGQET 375
GRT LH+AAR EV+ +LL GA + +G+T + + R ++E K E
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL----HLAARNGHLEVVKLLLEA 57
Query: 376 NKD 378
D
Sbjct: 58 GAD 60
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSET 345
LH AA + +V K + G AD+N KD GRT LH+AAR EV+ +LL GA +
Sbjct: 6 LHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 346 TPDGQTAVAICRR 358
+G+T + + R
Sbjct: 65 DKNGRTPLHLAAR 77
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
LH AA + +V K + G AD+N KD GRT LH+AAR EV+ +LL GA
Sbjct: 39 LHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 32.7 bits (73), Expect = 0.64, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 316 GRTVLHVAARRKEPEVMVVLLSKGACSSETTPDGQTAVAICRRMTRRKDYIEATKQGQET 375
GRT LH+AAR EV+ +LL GA + +G+T + + R ++E K E
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL----HLAARNGHLEVVKLLLEA 57
Query: 376 NKD 378
D
Sbjct: 58 GAD 60
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSET 345
LH AA + + ++ + + G AD+N KD+ G T LH+AARR E++ VLL GA + +
Sbjct: 51 LHLAAHFGHLEIVEVLLKNG-ADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNAS 109
Query: 346 TPDGQTAVAICRR 358
G T + + +
Sbjct: 110 DSHGFTPLHLAAK 122
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSET 345
LH AA + ++ + + G AD+N D+ G T LH+AA+R E++ VLL GA +
Sbjct: 84 LHLAARRGHLEIVEVLLKNG-ADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQ 142
Query: 346 TPDGQTAVAI 355
G+TA I
Sbjct: 143 DKFGKTAFDI 152
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
AD+N +D G T LH+AA E++ VLL GA
Sbjct: 38 ADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGA 71
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 42.0 bits (97), Expect = 9e-04, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 281 DDACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
D LH AA + ++ + + G AD+N KD G T LH+AAR E++ VLL GA
Sbjct: 46 DGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 104
Query: 341 CSSETTPDGQTAVAICRR 358
+ DG T + + R
Sbjct: 105 DVNAKDKDGYTPLHLAAR 122
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSETTPDGQTAVAICRR 358
AD+N KD G T LH+AAR E++ VLL GA + DG T + + R
Sbjct: 38 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 89
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 281 DDACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
D LH AA + ++ + + G AD+N KD G T LH+AAR E++ VLL GA
Sbjct: 79 DGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Query: 341 CSSETTPDGQTAVAI 355
+ G+TA I
Sbjct: 138 DVNAQDKFGKTAFDI 152
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 281 DDACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
D LH AA + + K++ + G AD+N + G T LH+AA+ E++ +LL+KGA
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKG-ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 341 CSSETTPDGQTAVAICRR 358
+ + DG T + ++
Sbjct: 67 DVNARSKDGNTPEHLAKK 84
Score = 29.3 bits (64), Expect = 6.0, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 281 DDACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
D LH AA + ++ K + G AD+N + G T H+A + E++ +L +KGA
Sbjct: 41 DGNTPLHLAAKNGHAEIVKLLLAKG-ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 281 DDACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
D LH AA + ++ + + G AD+N KD G T LH+AAR E++ VLL GA
Sbjct: 34 DGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 341 CSSETTPDGQTAVAICRR 358
+ DG T + + R
Sbjct: 93 DVNAKDKDGYTPLHLAAR 110
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSETTPDGQTAVAICRR 358
AD+N KD G T LH+AAR E++ VLL GA + DG T + + R
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 77
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 281 DDACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
D LH AA + ++ + + G AD+N KD G T LH+AAR E++ VLL GA
Sbjct: 67 DGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 281 DDACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
D LH AA + ++ + + G AD+N KD G T LH+AAR E++ VLL GA
Sbjct: 34 DGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 341 CSSETTPDGQTAVAICRR 358
+ DG T + + R
Sbjct: 93 DVNAKDKDGYTPLHLAAR 110
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSETTPDGQTAVAICRR 358
AD+N KD G T LH+AAR E++ VLL GA + DG T + + R
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 77
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 281 DDACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
D LH AA + ++ + + G AD+N KD G T LH+AAR E++ VLL GA
Sbjct: 67 DGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSET 345
LH AA + + ++ + + G AD+N KD G T LH+AA R E++ VLL GA +
Sbjct: 84 LHLAAHFGHLEIVEVLLKNG-ADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQ 142
Query: 346 TPDGQTAVAI 355
G+TA I
Sbjct: 143 DKFGKTAFDI 152
Score = 33.5 bits (75), Expect = 0.33, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSET 345
LH AA + + ++ + + G AD+N D G T LH+AA E++ VLL GA +
Sbjct: 51 LHLAAYWGHLEIVEVLLKNG-ADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAK 109
Query: 346 TPDGQT 351
+G T
Sbjct: 110 DDNGIT 115
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
AD+N D G T LH+AA E++ VLL GA
Sbjct: 38 ADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGA 71
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 281 DDACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
D LH AA + ++ + + G AD+N +DA G T LH+AA R E++ VLL GA
Sbjct: 79 DGWTPLHLAADNGHLEIVEVLLKYG-ADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGA 137
Query: 341 CSSETTPDGQTAVAI 355
+ G+TA I
Sbjct: 138 DVNAQDKFGKTAFDI 152
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSETTPDGQT 351
AD+N D +G T LH+AA PE++ VLL GA + DG T
Sbjct: 38 ADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWT 82
Score = 37.0 bits (84), Expect = 0.028, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
LH AA +P++ + + G AD+N +D G T LH+AA E++ VLL GA
Sbjct: 51 LHLAAWIGHPEIVEVLLKHG-ADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGA 104
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 280 LDDA--CALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLS 337
+DDA LH AA + ++ + + G AD+N +D GRT LH+AA E++ VLL
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHG-ADVNARDIWGRTPLHLAATVGHLEIVEVLLE 101
Query: 338 KGACSSETTPDGQTAVAI 355
GA + G+TA I
Sbjct: 102 YGADVNAQDKFGKTAFDI 119
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
AD+N D G T LH+AA+R E++ VLL GA
Sbjct: 38 ADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 280 LDDA--CALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLS 337
+DDA LH AA + ++ + + G AD+N D+ GRT LH+AA E++ VLL
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHG-ADVNASDSWGRTPLHLAATVGHLEIVEVLLE 101
Query: 338 KGACSSETTPDGQTAVAI 355
GA + G+TA I
Sbjct: 102 YGADVNAQDKFGKTAFDI 119
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSETTPDGQT 351
AD+N D G T LH+AA+R E++ VLL GA + + G+T
Sbjct: 38 ADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRT 82
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 28/49 (57%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSETTPDGQTAVAI 355
AD+N KD G T LH+AAR E++ VLL GA + G+TA I
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDI 74
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 280 LDDA--CALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLS 337
+DDA LH AA + ++ + + G AD+N D GRT LH+AA E++ VLL
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHG-ADVNASDIWGRTPLHLAATVGHLEIVEVLLE 101
Query: 338 KGACSSETTPDGQTAVAI 355
GA + G+TA I
Sbjct: 102 YGADVNAQDKFGKTAFDI 119
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
AD+N D G T LH+AA+R E++ VLL GA
Sbjct: 38 ADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSET 345
LH AAA + ++ + + G AD+N D G T LH+AA+ E++ VLL GA +
Sbjct: 84 LHLAAATGHLEIVEVLLKHG-ADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQ 142
Query: 346 TPDGQTAVAI 355
G+TA I
Sbjct: 143 DKFGKTAFDI 152
Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 281 DDACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
D LH AA+ + ++ + + G AD+N D G T LH+AA E++ VLL GA
Sbjct: 46 DGYTPLHLAASNGHLEIVEVLLKNG-ADVNASDLTGITPLHLAAATGHLEIVEVLLKHGA 104
Query: 341 CSSETTPDGQTAVAICRR 358
+ DG T + + +
Sbjct: 105 DVNAYDNDGHTPLHLAAK 122
Score = 32.0 bits (71), Expect = 0.95, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
AD+N D G T LH+AA E++ VLL GA
Sbjct: 38 ADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGA 71
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 37.4 bits (85), Expect = 0.021, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
LH AA + + ++ + + G AD+N D+ G T LH+AA R EV+ VLL GA
Sbjct: 51 LHLAAYFGHLEIVEVLLKNG-ADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGA 104
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 278 VTLDDACA---LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVV 334
V DD+ LH AA + +V + + G AD+N D G T LH+AA E++ V
Sbjct: 73 VNADDSLGVTPLHLAADRGHLEVVEVLLKNG-ADVNANDHNGFTPLHLAANIGHLEIVEV 131
Query: 335 LLSKGACSSETTPDGQTAVAI 355
LL GA + G+TA I
Sbjct: 132 LLKHGADVNAQDKFGKTAFDI 152
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
AD+N D G T LH+AA E++ VLL GA
Sbjct: 38 ADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGA 71
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 37.0 bits (84), Expect = 0.027, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 281 DDACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
D LH AA + ++ + + G AD+N +D G T LH+AA R E++ VLL GA
Sbjct: 46 DGLTPLHLAAQLGHLEIVEVLLKYG-ADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGA 104
Query: 341 CSSETTPDGQTAVAI 355
+ G+TA I
Sbjct: 105 DVNAQDKFGKTAFDI 119
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
AD+N D G T LH+AA+ E++ VLL GA
Sbjct: 38 ADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA 71
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSET 345
LH AA Y + ++ + + G AD+N D G T LH+AA E++ VLL GA +
Sbjct: 84 LHLAALYGHLEIVEVLLKNG-ADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQ 142
Query: 346 TPDGQTAVAI 355
G+TA I
Sbjct: 143 DKFGKTAFDI 152
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
AD+N +D G+T LH+AA + E++ VLL GA
Sbjct: 38 ADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGA 71
Score = 32.3 bits (72), Expect = 0.68, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSET 345
LH AA + ++ + + G AD+N D G T LH+AA E++ VLL GA + T
Sbjct: 51 LHLAAIKGHLEIVEVLLKHG-ADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNAT 109
Query: 346 TPDGQT 351
G T
Sbjct: 110 DTYGFT 115
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 36.6 bits (83), Expect = 0.039, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSET 345
LH AA+ + ++ + + G AD+N KDA G T L++AA E++ VLL GA +
Sbjct: 72 LHLAASLGHLEIVEVLLKYG-ADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQ 130
Query: 346 TPDGQTAVAI 355
G+TA I
Sbjct: 131 DKFGKTAFDI 140
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 24/45 (53%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSETTPDGQT 351
AD N D GRT LH+AA E++ VLL GA + +G T
Sbjct: 26 ADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTT 70
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 285 ALHYAAAYCNPKVFKEVHNMGL---ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGAC 341
ALH A A +PK K+V + L A++N K+ T LHVAA R +VM VL GA
Sbjct: 214 ALHCAVASLHPK-RKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK 272
Query: 342 SSETTPDGQTAV 353
+ GQTA+
Sbjct: 273 MNALDSLGQTAL 284
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGAC 341
LH AA Y ++ + + G AD++ KD G LH A EV +LL GAC
Sbjct: 62 LHLAAGYNRVRIVQLLLQHG-ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC 116
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSET 345
LH AA + V + +H G A +N D+ G+T LH AA + +LLS G+ S
Sbjct: 251 LHVAAERAHNDVMEVLHKHG-AKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSII 309
Query: 346 TPDGQTAVAI 355
+ G TA +
Sbjct: 310 SLQGFTAAQM 319
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 283 ACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACS 342
A ALH AAAY K + AD N++D GRT LH A V +L+ A
Sbjct: 58 ATALHLAAAYSRSDAAKRLLEAS-ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 116
Query: 343 SET-TPDGQTAVAICRRM 359
+ DG T + + R+
Sbjct: 117 LDARMHDGTTPLILAARL 134
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
Length = 124
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 17/110 (15%)
Query: 32 LDTLNLRRQSSNPEEPLLDAEIVVDGKSVAVNRSILSARSRFFHWLFHLSSDGSVSEGKP 91
L +LN +R+ ++ L D I V+G+ +RS+L+A S +FH +DG ++ P
Sbjct: 17 LLSLNDQRK----KDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLP 72
Query: 92 KYLMTDLVPYRKVGYEAFNDILHYLYTG---MRKAPPSEVFTCVDDTCVH 138
+ +V + F ++ + YT + K EV CV+ VH
Sbjct: 73 E----------EVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVH 112
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 36.2 bits (82), Expect = 0.047, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSET 345
LH AA + + ++ + + G AD+N D+ G T LH+AA+ E++ VLL GA +
Sbjct: 84 LHLAAYWGHLEIVEVLLKNG-ADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQ 142
Query: 346 TPDGQTAVAI 355
G+TA I
Sbjct: 143 DKFGKTAFDI 152
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSET 345
LH AA + ++ + + G AD++ D G T LH+AA E++ VLL GA +
Sbjct: 51 LHLAAYSGHLEIVEVLLKHG-ADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAM 109
Query: 346 TPDGQTAVAICRR 358
DG T + + +
Sbjct: 110 DSDGMTPLHLAAK 122
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
AD+N D G T LH+AA E++ VLL GA
Sbjct: 38 ADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA 71
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 36.2 bits (82), Expect = 0.051, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 283 ACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACS 342
A LH AA + ++ + + G AD+N KD G T LH+AA E++ VLL GA
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHG-ADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADV 139
Query: 343 SETTPDGQTAVAI 355
+ G+TA I
Sbjct: 140 NAQDKFGKTAFDI 152
Score = 32.0 bits (71), Expect = 0.84, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
AD+N D G T LH+AA+ E++ VLL GA
Sbjct: 38 ADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA 71
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
LH AA + ++ + + G AD+N D G T LH+AA E++ VLL GA
Sbjct: 51 LHLAAKTGHLEIVEVLLKYG-ADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGA 104
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 36.2 bits (82), Expect = 0.054, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSET 345
LH AA Y + ++ + + G AD+N D G T LH+AA E++ VLL GA +
Sbjct: 51 LHLAADYDHLEIVEVLLKHG-ADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQ 109
Query: 346 TPDGQTAVAI 355
G+TA I
Sbjct: 110 DKFGKTAFDI 119
Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSETTPDGQT 351
AD+N D +G T LH+AA E++ VLL GA + DG T
Sbjct: 38 ADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGST 82
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 35.8 bits (81), Expect = 0.062, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 27/49 (55%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSETTPDGQTAVAI 355
AD+ KD G T LH+AAR EV+ +LL GA + G+TA I
Sbjct: 30 ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDI 78
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 35.8 bits (81), Expect = 0.067, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 26/49 (53%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSETTPDGQTAVAI 355
AD+ KD G T LH+AAR EV+ +LL GA G+TA I
Sbjct: 48 ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI 96
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 35.4 bits (80), Expect = 0.084, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSETTPDGQTAVAICRRMTRRKDYI 366
AD+N +D G T LH+AAR E++ VLL GA + G T + + + +
Sbjct: 38 ADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVE 97
Query: 367 EATKQGQETNKD 378
K G + N D
Sbjct: 98 VLLKYGADVNAD 109
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSET 345
LH AA + ++ + + G AD+N D G T LH+AA E++ VLL GA +
Sbjct: 84 LHLAAKRGHLEIVEVLLKYG-ADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQ 142
Query: 346 TPDGQTAVAI 355
G+TA I
Sbjct: 143 DKFGKTAFDI 152
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 281 DDACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
D ALH+A + + ++ + + +G+ +N KD G + LH+AA E++ LL KGA
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 97
Query: 341 CSSETTPDGQT 351
+ +G T
Sbjct: 98 QVNAVNQNGCT 108
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 281 DDACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
D ALH+A + + ++ + + +G+ +N KD G + LH+AA E++ LL KGA
Sbjct: 40 DSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 98
Query: 341 CSSETTPDGQT 351
+ +G T
Sbjct: 99 QVNAVNQNGCT 109
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSET 345
LH AA + ++ + + G AD+N D +G T LH+AA E++ VLL GA +
Sbjct: 84 LHLAAYRGHLEIVEVLLKYG-ADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQ 142
Query: 346 TPDGQTAVAI 355
G+TA I
Sbjct: 143 DKFGKTAFDI 152
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
AD+N D G T LH+AA R E++ VLL GA
Sbjct: 71 ADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGA 104
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
LH AA Y + ++ + + G AD+N D G T LH+AA E++ VLL GA
Sbjct: 51 LHLAATYGHLEIVEVLLKHG-ADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGA 104
Score = 33.5 bits (75), Expect = 0.33, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
AD+N DA G T LH+AA E++ VLL GA
Sbjct: 38 ADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Score = 33.1 bits (74), Expect = 0.44, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 278 VTLDDACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLS 337
+ + + LH AA + ++ + + G AD+N D G T LH+AA E++ VLL
Sbjct: 76 IDIXGSTPLHLAALIGHLEIVEVLLKHG-ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 338 KGACSSETTPDGQTAVAI 355
GA + G+TA I
Sbjct: 135 HGADVNAQDKFGKTAFDI 152
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
LH AA Y + ++ + + G AD+N D G T LH+AA E++ VLL GA
Sbjct: 51 LHLAATYGHLEIVEVLLKHG-ADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGA 104
Score = 33.5 bits (75), Expect = 0.33, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
AD+N DA G T LH+AA E++ VLL GA
Sbjct: 38 ADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Score = 33.1 bits (74), Expect = 0.46, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSET 345
LH AA + ++ + + G AD+N D G T LH+AA E++ VLL GA +
Sbjct: 84 LHLAALIGHLEIVEVLLKHG-ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQ 142
Query: 346 TPDGQTAVAI 355
G+TA I
Sbjct: 143 DKFGKTAFDI 152
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSETTPDGQTAVAI 355
AD+N D G T LH+AA E++ VLL GA + G+TA I
Sbjct: 104 ADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152
Score = 33.9 bits (76), Expect = 0.24, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
AD+N +DA G T LH+AA E++ VLL GA
Sbjct: 38 ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA 71
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSET 345
LH AA + ++ + + G AD+N D G T LH+AA E++ VLL GA +
Sbjct: 84 LHLAAMTGHLEIVEVLLKYG-ADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQ 142
Query: 346 TPDGQTAVAI 355
G+TA I
Sbjct: 143 DKFGKTAFDI 152
Score = 30.0 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
AD+N D G T LH+AA E++ VLL GA
Sbjct: 38 ADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGA 71
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSET 345
LH AA + ++ + + G AD+N GRT LH+AA E++ VLL GA +
Sbjct: 51 LHLAAMLGHLEIVEVLLKNG-ADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQ 109
Query: 346 TPDGQTAVAI 355
G+TA I
Sbjct: 110 DKFGKTAFDI 119
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSETTPDGQT 351
AD+N D G T LH+AA E++ VLL GA + T G+T
Sbjct: 38 ADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRT 82
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 309 INLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSETTPDG 349
++ KDA G T LH+AA++ EV+ LLS G DG
Sbjct: 70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG 110
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
LH AA + +V + + + G D+N +D G T + A K +++ +LLSKG+
Sbjct: 81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGS 135
>pdb|1CS3|A Chain A, Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN FROM
PROMELOCYTIC Leukemia Zinc Finger Oncoprotein
Length = 116
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 48 LLDAEIVVDGKSVAVNRSILSARSRFFHWLFHLSSDGSVSEGKPKYLMTDLVPYRKVGYE 107
L D I+VD + +R++L+ S+ F LFH +S Y + L P +
Sbjct: 27 LCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQ--------HYTLDFLSP------K 72
Query: 108 AFNDILHYLYTGMRKAPPSEV 128
F IL Y YT +A ++
Sbjct: 73 TFQQILEYAYTATLQAKAEDL 93
>pdb|1BUO|A Chain A, Btb Domain From Plzf
Length = 121
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 48 LLDAEIVVDGKSVAVNRSILSARSRFFHWLFHLSSDGSVSEGKPKYLMTDLVPYRKVGYE 107
L D I+VD + +R++L+ S+ F LFH +S Y + L P +
Sbjct: 28 LCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQ--------HYTLDFLSP------K 73
Query: 108 AFNDILHYLYTGMRKAPPSEV 128
F IL Y YT +A ++
Sbjct: 74 TFQQILEYAYTATLQAKAEDL 94
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
LH AAA ++ + + G AD+N D+ G T LH+AA E++ VLL GA
Sbjct: 43 LHLAAANGQLEIVEVLLKNG-ADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGA 96
Score = 32.7 bits (73), Expect = 0.56, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
AD+N D G T LH+AA + E++ VLL GA
Sbjct: 30 ADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGA 63
Score = 32.0 bits (71), Expect = 0.95, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSET 345
LH AA + ++ + + G AD+N D G T LH+AA + E++ VLL GA +
Sbjct: 76 LHLAAYDGHLEIVEVLLKHG-ADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQ 134
Query: 346 TPDGQTAVAICRRMTRRKDYIEATKQGQE 374
G TA I + QGQE
Sbjct: 135 DALGLTAFDI------------SINQGQE 151
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 281 DDACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
D ALH+A + + ++ + + +G+ +N KD G + LH+AA E++ LL KGA
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAGRDEIVKALLVKGA 97
Query: 341 CSSETTPDGQT 351
+ +G T
Sbjct: 98 HVNAVNQNGCT 108
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 282 DACALHYAAAYCNPKVFKEVHNMGL--ADINLKDARGRTVLHVAARRKEPEVMVVLLSKG 339
DA A+H AAA N K VH + A N++D G T LH+A + E L+++G
Sbjct: 139 DATAMHRAAAKGN---LKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG 195
Query: 340 A 340
A
Sbjct: 196 A 196
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 281 DDACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
D ALH+A + + ++ + + +G+ +N KD G + LH+AA E++ LL KGA
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAGXDEIVKALLVKGA 97
Query: 341 CSSETTPDGQT 351
+ +G T
Sbjct: 98 HVNAVNQNGCT 108
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 282 DACALHYAAAYCNPKVFKEVHNMGL--ADINLKDARGRTVLHVAARRKEPEVMVVLLSKG 339
DA A+H AAA N K VH + A N++D G T LH+A + E L+++G
Sbjct: 139 DATAMHRAAAKGN---LKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG 195
Query: 340 A 340
A
Sbjct: 196 A 196
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 286 LHYAAAYCN----PKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGAC 341
LH A N P V + N G ++ K A G T LH AA +P+ + +LL A
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGG--HLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL 232
Query: 342 SSETTPDGQTAVAICRRMTRRKDYIEATKQGQ 373
G+TA+ I R+ K+ E +Q Q
Sbjct: 233 VGTVNEAGETALDIARK-KHHKECEELLEQAQ 263
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 284 CALHYAAAYCNPKVFKEVHNMGLADINLKDARGR-TVLHVAARRKEPEVMVVLLSKGACS 342
AL + A + K + + G AD++ +D RG T LH+AA PEV+ L+ GA
Sbjct: 79 TALLFVAGLGSDKCVRLLAEAG-ADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI 137
Query: 343 SETTPDGQTAVAICRRMTR 361
G TA+ + R + +
Sbjct: 138 EVEDERGLTALELAREILK 156
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 17/110 (15%)
Query: 32 LDTLNLRRQSSNPEEPLLDAEIVVDGKSVAVNRSILSARSRFFHWLFHLSSDGSVSEGKP 91
L +LN +R+ ++ L D ++V+G+ +RS+L+A S +FH +D ++ P
Sbjct: 24 LLSLNDQRK----KDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLP 79
Query: 92 KYLMTDLVPYRKVGYEAFNDILHYLYTG---MRKAPPSEVFTCVDDTCVH 138
+ +V + F ++ + YT + K EV CV+ VH
Sbjct: 80 E----------EVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVH 119
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 286 LHYAAAYCN----PKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGAC 341
LH A N P V + N G ++ K A G T LH AA +P+ + +LL A
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGG--HLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL 251
Query: 342 SSETTPDGQTAVAICRRMTRRKDYIEATKQGQ 373
G+TA+ I R+ K+ E +Q Q
Sbjct: 252 VGTVNEAGETALDIARK-KHHKECEELLEQAQ 282
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 281 DDACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
DD LH AA + + K + A+ NL G T LH+AAR E ++ LL K A
Sbjct: 79 DDQTPLHCAARIGHTNMVKLLLENN-ANPNLATTAGHTPLHIAAREGHVETVLALLEKEA 137
Query: 341 CSSETTPDGQTAVAICRR 358
+ T G T + + +
Sbjct: 138 SQACMTKKGFTPLHVAAK 155
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSET 345
LH AA +V + + G N + +G T LH+AA+ E++ +LLSK A +
Sbjct: 216 LHIAAKQNQVEVARSLLQYG-GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG 274
Query: 346 TPDGQTAVAICRR 358
G T + + +
Sbjct: 275 NKSGLTPLHLVAQ 287
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 33.1 bits (74), Expect = 0.46, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSET 345
LH AA + ++ + + G AD+N DA G T LH+ A E++ VLL GA +
Sbjct: 51 LHLAAMNDHLEIVEVLLKNG-ADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQ 109
Query: 346 TPDGQTAVAI 355
G+TA I
Sbjct: 110 DKFGKTAFDI 119
Score = 32.7 bits (73), Expect = 0.55, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSETTPDGQT 351
AD+N +D G T LH+AA E++ VLL GA + G+T
Sbjct: 38 ADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGET 82
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
I
Length = 124
Score = 32.7 bits (73), Expect = 0.55, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 14/69 (20%)
Query: 50 DAEIVVDGKSVAVNRSILSARSRFFHWLFHLSSDGSVSEGKPKYLMTDLVPYRKVGYEAF 109
D ++V+ + +++ILSA S +FH LF ++ +V + E F
Sbjct: 35 DVTVIVEDRKFRAHKNILSASSTYFHQLFSVAG--------------QVVELSFIRAEIF 80
Query: 110 NDILHYLYT 118
+IL+Y+Y+
Sbjct: 81 AEILNYIYS 89
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 284 CALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSS 343
ALH AA Y K + AD N++D GRT LH A V +L+ A
Sbjct: 27 TALHLAARYSRSDAAKRLLEAS-ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 85
Query: 344 ET-TPDGQTAVAICRRM 359
+ DG T + + R+
Sbjct: 86 DARMHDGTTPLILAARL 102
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 32.7 bits (73), Expect = 0.60, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 14/69 (20%)
Query: 50 DAEIVVDGKSVAVNRSILSARSRFFHWLFHLSSDGSVSEGKPKYLMTDLVPYRKVGYEAF 109
D ++V+ + +++ILSA S +FH LF ++ +V + E F
Sbjct: 33 DVTVIVEDRKFRAHKNILSASSTYFHQLFSVAG--------------QVVELSFIRAEIF 78
Query: 110 NDILHYLYT 118
+IL+Y+Y+
Sbjct: 79 AEILNYIYS 87
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 284 CALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSS 343
ALH AA Y K + AD N++D GRT LH A V +L+ A
Sbjct: 59 TALHLAARYSRSDAAKRLLEAS-ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 117
Query: 344 ET-TPDGQTAVAICRRM 359
+ DG T + + R+
Sbjct: 118 DARMHDGTTPLILAARL 134
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 284 CALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGAC 341
ALHYAA N + K + ++ + +D G+T + +AA+ EV+ L+ +GA
Sbjct: 281 TALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 284 CALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSS 343
ALH AA Y K + AD N++D GRT LH A V +L+ A
Sbjct: 60 TALHLAARYSRSDAAKRLLEAS-ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 118
Query: 344 ET-TPDGQTAVAICRRM 359
+ DG T + + R+
Sbjct: 119 DARMHDGTTPLILAARL 135
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 32.3 bits (72), Expect = 0.74, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 285 ALHYAAAYCNPKVFKEVHNMGLADINLKDARG-RTVLHVAARRKEPEVMVVLLSKGACSS 343
AL + A + K + + G AD++ +D RG T LH+AA PEV+ L+ GA
Sbjct: 79 ALLFVAGLGSDKCVRLLAEAG-ADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE 137
Query: 344 ETTPDGQTAVAICRRMTR 361
G TA+ + R + +
Sbjct: 138 VEDERGLTALELAREILK 155
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 32.0 bits (71), Expect = 0.96, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSET 345
L+ A A+ + ++ + + G AD+N DA G T LH+AA E+ VLL GA +
Sbjct: 51 LYLATAHGHLEIVEVLLKNG-ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ 109
Query: 346 TPDGQTAVAI 355
G+TA I
Sbjct: 110 DKFGKTAFDI 119
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
AD+N KD G T L++A E++ VLL GA
Sbjct: 38 ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 32.0 bits (71), Expect = 0.98, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 12/70 (17%)
Query: 50 DAEIVVDGKSVAVNRSILSARSRFFHWLFHLSSDGSVSEGKPKYLMTDLVPYRKVGYEAF 109
D +VV G + +R++L+A S +F LF+ S V L + P ++F
Sbjct: 35 DVSVVVKGHAFKAHRAVLAASSSYFRDLFNNSRSAVVE------LPAAVQP------QSF 82
Query: 110 NDILHYLYTG 119
IL + YTG
Sbjct: 83 QQILSFCYTG 92
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSET 345
LHYAA C E + ADIN D T L A + +LLSKGA +
Sbjct: 39 LHYAAD-CGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK 97
Query: 346 TPDGQTAV 353
PDG TA+
Sbjct: 98 GPDGLTAL 105
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKD-ARGRTVLHVAARRKEPEVMVVLLSKGACSSE 344
LH A+ + + + + ++G AD+N ++ GRT LH+A + P+++ +LL GA +
Sbjct: 121 LHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 179
Query: 345 TTPDG 349
T G
Sbjct: 180 VTYQG 184
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSSET 345
LHYAA C E + ADIN D T L A + +LLSKGA +
Sbjct: 44 LHYAAD-CGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK 102
Query: 346 TPDGQTA 352
PDG TA
Sbjct: 103 GPDGLTA 109
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 286 LHYAAAYCNPKVFKEVHNMGLADINLKD-ARGRTVLHVAARRKEPEVMVVLLSKGACSSE 344
LH A+ + + + + ++G AD+N ++ GRT LH+A + P+++ +LL GA +
Sbjct: 118 LHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 176
Query: 345 TTPDG 349
T G
Sbjct: 177 VTYQG 181
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 48 LLDAEIVVDGKSVAVNRSILSARSRFFHWLFHLSSDGSVSEGKPKYLMTDLVPYRKVGYE 107
L D I+V+G+ +RS+L+A S++F LF + G+V + + Y + D V E
Sbjct: 35 LCDVVILVEGREFPTHRSVLAACSQYFKKLF---TSGAVVDQQNVYEI-DF-----VSAE 85
Query: 108 AFNDILHYLYTGMRKAPPSEVFTCVDDTCVHLVCPPAINYV 148
A ++ + YT + V + + L+ PA+++V
Sbjct: 86 ALTALMDFAYTATLTVSTANVGDIL--SAARLLEIPAVSHV 124
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 204 QRIARSNIDNVCLEKELPDEVSSEIKS 230
Q + ++ IDNV LE++ PDEV I++
Sbjct: 19 QLLHKAGIDNVILERQTPDEVLGRIRA 45
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 282 DACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
D LH AA+ + + + + G AD+N KD T LH A EV+ +L+ GA
Sbjct: 67 DRTPLHMAASEGHANIVEVLLKHG-ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA 124
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 284 CALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACSS 343
ALH AA Y K + AD ++D GRT LH A V +LL A
Sbjct: 24 TALHLAARYSRSDAAKRLLEAS-ADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDL 82
Query: 344 ET-TPDGQTAVAICRRM 359
+ DG T + + R+
Sbjct: 83 DARMHDGTTPLILAARL 99
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 283 ACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACS 342
ALH AAA +V K + D+N+KD G T LH AA + E +L+ + C
Sbjct: 200 GTALHVAAAKGYTEVLK-LLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV-ENLCD 257
Query: 343 SETTPD-GQTAVAIC 356
E GQTA +
Sbjct: 258 MEAVNKVGQTAFDVA 272
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 48 LLDAEIVVDGKSVAVNRSILSARSRFFHWLFHLSSDGSVSEGKPKYLMTDLVPYRKVGYE 107
L D I+V+G+ +RS+L+A S++F LF + G+V + + Y + D V E
Sbjct: 25 LCDVVILVEGREFPTHRSVLAACSQYFKKLF---TSGAVVDQQNVYEI-DF-----VSAE 75
Query: 108 AFNDILHYLYTGMRKAPPSEVFTCVDDTCVHLVCPPAINYV 148
A ++ + YT + V + + L+ PA+++V
Sbjct: 76 ALTALMDFAYTATLTVSTANVGDIL--SAARLLEIPAVSHV 114
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 32/58 (55%)
Query: 283 ACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGA 340
+ AL++A + + + + ++N ++ G T LH AA + +++ +LL+KGA
Sbjct: 107 STALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 5/21 (23%)
Query: 485 YCNRPHCLELVDEFLDCDWSD 505
YCN HCL++V CDW+D
Sbjct: 148 YCNLAHCLQIV-----CDWTD 163
>pdb|2VDC|A Chain A, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|B Chain B, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|C Chain C, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|D Chain D, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|E Chain E, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|F Chain F, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications
Length = 1472
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 298 FKEVHNMGLADINLKDARGRTVLHVAAR--RKEPEVMVVLLSKGACSSETTPDGQTAV 353
K V +GL+D D TV V R R P V ++L+ + SS+TTPD A+
Sbjct: 263 LKPVIGVGLSDSGSLD----TVFEVMVRAGRTAPMVKMMLVPQALTSSQTTPDNHKAL 316
>pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase
pdb|1EA0|B Chain B, Alpha Subunit Of A. Brasilense Glutamate Synthase
Length = 1479
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 298 FKEVHNMGLADINLKDARGRTVLHVAAR--RKEPEVMVVLLSKGACSSETTPDGQTAV 353
K V +GL+D D TV V R R P V ++L+ + SS+TTPD A+
Sbjct: 263 LKPVIGVGLSDSGSLD----TVFEVMVRAGRTAPMVKMMLVPQALTSSQTTPDNHKAL 316
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACS-SETTPDGQTAVAICRRMTRRKDY 365
AD+N++ RG+T L +A +K ++ LL + ++T DG+TA+ + + +K
Sbjct: 210 ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 269
Query: 366 IEATKQGQETN 376
K+G T+
Sbjct: 270 ELLCKRGASTD 280
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACS-SETTPDGQTAVAICRRMTRRKDY 365
AD+N++ RG+T L +A +K ++ LL + ++T DG+TA+ + + +K
Sbjct: 230 ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 289
Query: 366 IEATKQGQETN 376
K+G T+
Sbjct: 290 ELLCKRGASTD 300
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 282 DACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGAC 341
D LH AA++ + + +++ ADIN + G LH A + +V L++ GA
Sbjct: 67 DDTPLHLAASHGHRDIVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL 125
Query: 342 SSETTPDGQTAVAICRRMTRRKDYIEATKQGQETNK 377
S G+ V + R A K GQ N+
Sbjct: 126 VSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR 161
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 282 DACALHYAAAYCNPKVFKEVHNMGLADINLKDARGRTVLHVAARRKEPEVMVVLLSKGAC 341
D LH AA++ + + +++ ADIN + G LH A + +V L++ GA
Sbjct: 72 DDTPLHLAASHGHRDIVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL 130
Query: 342 SSETTPDGQTAVAICRRMTRRKDYIEATKQGQETNK 377
S G+ V + R A K GQ N+
Sbjct: 131 VSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR 166
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 28.9 bits (63), Expect = 7.3, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACS-SETTPDGQTAVAICRRMTRRK-- 363
AD+N++D G LH+AA+ V+ L+ A + G TA + R R +
Sbjct: 94 ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV 153
Query: 364 DYIEATKQGQETN 376
++A G TN
Sbjct: 154 SLMQANGAGGATN 166
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 28.9 bits (63), Expect = 7.3, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACS-SETTPDGQTAVAICRRMTRRK-- 363
AD+N++D G LH+AA+ V+ L+ A + G TA + R R +
Sbjct: 94 ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV 153
Query: 364 DYIEATKQGQETN 376
++A G TN
Sbjct: 154 SLMQANGAGGATN 166
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 28.9 bits (63), Expect = 7.3, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACS-SETTPDGQTAVAICRRMTRRK-- 363
AD+N++D G LH+AA+ V+ L+ A + G TA + R R +
Sbjct: 94 ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV 153
Query: 364 DYIEATKQGQETN 376
++A G TN
Sbjct: 154 SLMQANGAGGATN 166
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 28.9 bits (63), Expect = 7.3, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 307 ADINLKDARGRTVLHVAARRKEPEVMVVLLSKGACS-SETTPDGQTAVAICRRMTRRK-- 363
AD+N++D G LH+AA+ V+ L+ A + G TA + R R +
Sbjct: 94 ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV 153
Query: 364 DYIEATKQGQETN 376
++A G TN
Sbjct: 154 SLMQANGAGGATN 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,003,465
Number of Sequences: 62578
Number of extensions: 634231
Number of successful extensions: 1694
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1504
Number of HSP's gapped (non-prelim): 208
length of query: 574
length of database: 14,973,337
effective HSP length: 104
effective length of query: 470
effective length of database: 8,465,225
effective search space: 3978655750
effective search space used: 3978655750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)