BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008205
(574 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The
Group Iii Metabotropic Glutamate Receptor
Length = 501
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 104/425 (24%), Positives = 173/425 (40%), Gaps = 66/425 (15%)
Query: 61 NSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLE-----------------------NE 97
NS+P +L L + DT + ++LT ++ +
Sbjct: 58 NSDPNLLPNVTLGARILDTCSRDTYALEQSLTFVQALIQKDTSDVRCTNGEPPVFVKPEK 117
Query: 98 TVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAI 156
V +IG S ++ +V++I FQ+P +S+A+T P LS +Y FF R D +Q A+
Sbjct: 118 VVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAM 177
Query: 157 ADIVDYFGWRNVIALYVDDDHGRNGIAALGD--KLAEKRC-RLSHKVPLSPKGSR---NQ 210
DIV GW V L + +G G+ + K A C S ++P K ++
Sbjct: 178 VDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLCIAQSVRIPQERKDRTIDFDR 237
Query: 211 IIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD-WLSSILDTDSQ 269
II LL + + ++ + DI ++L AAK + ++W+ +D W S I +
Sbjct: 238 IIKQLLDTPNSRAVVIFANDEDI--KQILAAAKRADQV-GHFLWVGSDSWGSKI----NP 290
Query: 270 LHSEKMDDIQGVLTLRMYTQSSEE-KRKFVTRWRHLTRRN---------TLNGPIGLNSF 319
LH + D +G +T++ + E F +R RRN N + ++
Sbjct: 291 LHQHE-DIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFAEYWEENFNCKLTISGS 349
Query: 320 GLYAYDTLWLLAHAIG--AFFDQGGNISFSEDS------KLSELSR---GDMRFSSVSIF 368
D IG + ++Q G + F D+ L +++ D R +
Sbjct: 350 KKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADYRGVCPEME 409
Query: 369 N-GGKMLLDNILQVNMTGVTG-PIKFTSDRDLINP----AYEVINVIGTGSRRIGYWSNH 422
GGK LL I VN G G P+ F + D Y+ N G R IG W++
Sbjct: 410 QAGGKKLLKYIRHVNFNGSAGTPVMFNKNGDAPGRYDIFQYQTTNTTNPGYRLIGQWTDE 469
Query: 423 SGLSV 427
L++
Sbjct: 470 LQLNI 474
>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With
Ly3414 Antagonist
Length = 481
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 100/424 (23%), Positives = 176/424 (41%), Gaps = 64/424 (15%)
Query: 61 NSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLE-----------------------NE 97
NS+P +L L + DT + ++LT ++ +
Sbjct: 58 NSDPNLLPNVTLGARILDTCSRDTYALEQSLTFVQALIQKDTSDVRCTNGEPPVFVKPEK 117
Query: 98 TVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAI 156
V +IG S ++ +V++I FQ+P +S+A+T P LS +Y FF R D +Q A+
Sbjct: 118 VVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAM 177
Query: 157 ADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLS-PKGSRNQIIDTL 215
DIV GW V L + +G G+ + +++++ LS + P+ +++ ID
Sbjct: 178 VDIVKALGWNYVSTLASEGSYGEKGVESF-TQISKEAGGLSIAQSVRIPQERKDRTIDFD 236
Query: 216 LTVSSMM----SRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD-WLSSILDTDSQL 270
+ ++ SR +++ D ++L AAK + ++W+ +D W S I + L
Sbjct: 237 RIIKQLLDTPNSRAVVIFANDEDIKQILAAAKRADQV-GHFLWVGSDSWGSKI----NPL 291
Query: 271 HSEKMDDIQGVLTLRMYTQSSEE-KRKFVTRWRHLTRRN---------TLNGPIGLNSFG 320
H + D +G +T++ + E F +R RRN N + ++
Sbjct: 292 HQHE-DIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFAEYWEENFNCKLTISGSK 350
Query: 321 LYAYDTLWLLAHAIG--AFFDQGGNISFSEDS------KLSELSR---GDMRFSSVSIFN 369
D IG + ++Q G + F D+ L +++ D R +
Sbjct: 351 KEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADYRGVCPEMEQ 410
Query: 370 -GGKMLLDNILQVNMTGVTG-PIKFTSDRDLINP----AYEVINVIGTGSRRIGYWSNHS 423
GGK LL I VN G G P+ F + D Y+ N G R IG W++
Sbjct: 411 AGGKKLLKYIRNVNFNGSAGTPVMFNKNGDAPGRYDIFQYQTTNTSNPGYRLIGQWTDEL 470
Query: 424 GLSV 427
L++
Sbjct: 471 QLNI 474
>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4U|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4V|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4V|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4W|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4W|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4X|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4X|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4Y|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
pdb|2E4Y|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
Length = 555
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 83/169 (49%), Gaps = 19/169 (11%)
Query: 99 VAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSL-QYPFFVRTTQSDLYQMAAIA 157
+IG +S ++ V+++ FQ+P +S+A+T LS +Y +F RT D YQ A+A
Sbjct: 119 AGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMA 178
Query: 158 DIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRL-------SHKVPLSP-KGSRN 209
+I+ +F W V + + D+G GI A E+ RL + KV S + S +
Sbjct: 179 EILRFFNWTYVSTVASEGDYGETGIEAF-----EQEARLRNICIATAEKVGRSNIRKSYD 233
Query: 210 QIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD 258
+I LL + +L + + D E++ AA + + + W+ +D
Sbjct: 234 SVIRELLQKPNARVVVLFMRSDD--SRELIAAANRVN---ASFTWVASD 277
>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3
Precursor In Presence Of Ly341495 Antagonist
Length = 479
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 15/167 (8%)
Query: 99 VAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSL-QYPFFVRTTQSDLYQMAAIA 157
+IG +S ++ V+++ FQ+P +S+A+T LS +Y +F RT D YQ A+A
Sbjct: 118 AGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMA 177
Query: 158 DIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSH-KVPLSPKGSRNQIIDTLL 216
+I+ +F W V + + D+G GI A E+ RL + + + K R+ I +
Sbjct: 178 EILRFFNWTYVSTVASEGDYGETGIEAF-----EQEARLRNISIATAEKVGRSNIRKSYD 232
Query: 217 TVSSMM-----SRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD 258
+V + +R+++L E++ AA + + W+ +D
Sbjct: 233 SVIRELLQKPNARVVVLFMRSDDSRELIAAASR---ANASFTWVASD 276
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 75/355 (21%), Positives = 148/355 (41%), Gaps = 41/355 (11%)
Query: 99 VAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQ-YPFFVRTTQSDLYQMAAIA 157
V +IGP S +A V ++ F +P ++++AT LS + +F+R SD Q A+
Sbjct: 131 VGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSMDLSDKTLFKYFMRVVPSDAQQARAMV 190
Query: 158 DIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLT 217
DIV + W V A++ + ++G +G+ A D A++ ++H + L
Sbjct: 191 DIVKRYNWTYVSAVHTEGNYGESGMEAFKDMSAKEGISIAHSYKIYSNAGEQSFDKLLKK 250
Query: 218 VSSMMSRILILHTYDIWGLEVLNAAKHLRM--MESGYVWIVTDWLSSILDTDSQLHSEKM 275
++S + + ++ + G+ V +R + ++ + +D + D E +
Sbjct: 251 LTSHLPKARVVACF-CEGMTVRGLLMAMRRLGLAGEFLLLGSDGWADRYDVTDGYQREAV 309
Query: 276 DDIQGVLT-----------LRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAY 324
I L L++ +++ F W+H + P + +
Sbjct: 310 GGITIKLQSPDVKWFDDYYLKLRPETNHRNPWFQEFWQHRFQCRLEGFPQENSKYNKTCN 369
Query: 325 DTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRG--DMRFSSVSIFNG---------GKM 373
+L L H + Q + F ++ S ++ G +M+ S + G G+
Sbjct: 370 SSLTLKTHHV-----QDSKMGFVINAIYS-MAYGLHNMQMSLCPGYAGLCDAMKPIDGRK 423
Query: 374 LLDNILQVNMTGVTGP-IKFTSDRDLINPA-YEVINVIGTGSR-----RIGYWSN 421
LL+++++ N TGV+G I F + D +P YE++N G +G W N
Sbjct: 424 LLESLMKTNFTGVSGDTILFDENGD--SPGRYEIMNFKEMGKDYFDYINVGSWDN 476
>pdb|3Q41|A Chain A, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|B Chain B, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|C Chain C, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
Length = 384
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/357 (20%), Positives = 143/357 (40%), Gaps = 77/357 (21%)
Query: 113 VSHIANEFQVPLLSFAA-----TDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRN 167
VS+ A +++P+L +D S+ + F+RT +Q + +++ + W +
Sbjct: 87 VSYTAGFYRIPVLGLTTRMSIYSDKSI----HLSFLRTVPPYSHQSSVWFEMMRVYNWNH 142
Query: 168 VIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILI 227
+I L DD GR L L E+ + + P G++N + L+ + +R++I
Sbjct: 143 IILLVSDDHEGRAAQKRLETLLEERESKAEKVLQFDP-GTKN-VTALLMEARELEARVII 200
Query: 228 LHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMY 287
L + V AA L M SGYVW+V + + ++ ++ G++ L++
Sbjct: 201 LSASEDDAATVYRAAAMLNMTGSGYVWLVGE---REISGNALRYAP-----DGIIGLQLI 252
Query: 288 TQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFS 347
+E H++ D + ++A A+
Sbjct: 253 NGKNESA--------HIS-------------------DAVGVVAQAVHELL--------- 276
Query: 348 EDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMT-GVTGPIKFTSDRDLINPAYEVI 406
E +++ RG + + +I+ G + ++ GVTG ++F D D Y ++
Sbjct: 277 EKENITDPPRGCV--GNTNIWKTGPLFKRVLMSSKYADGVTGRVEFNEDGDRKFANYSIM 334
Query: 407 NVIGTGSRRIGYWSNHSGLSVVPPEALYKEPSNRSASSQHLYSAVWPGQTTQKPRGW 463
N+ ++G + +G V+P + +WPG T+KPRG+
Sbjct: 335 NLQNRKLVQVGIY---NGTHVIPNDR----------------KIIWPGGETEKPRGY 372
>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
pdb|3KS9|B Chain B, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
Length = 496
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 99 VAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQ-YPFFVRTTQSDLYQMAAIA 157
+IGP S +A V ++ F +P ++++AT LS Y +F+R SD Q A+
Sbjct: 130 AGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAML 189
Query: 158 DIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSH 198
DIV + W V A++ + ++G +G+ A + A++ ++H
Sbjct: 190 DIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAH 230
>pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWK|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWT|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWT|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWV|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1EWV|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1ISR|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate And Gadolinium Ion
pdb|1ISS|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
pdb|1ISS|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
Length = 490
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 99 VAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQ-YPFFVRTTQSDLYQMAAIA 157
+IGP S +A V ++ F +P ++++AT LS Y +F+R SD Q A+
Sbjct: 125 AGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAML 184
Query: 158 DIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSH 198
DIV + W V A++ + ++G +G+ A + A++ ++H
Sbjct: 185 DIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLCIAH 225
>pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
pdb|4F12|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
Length = 433
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 77/352 (21%), Positives = 132/352 (37%), Gaps = 46/352 (13%)
Query: 63 NPAILGGTKLKLTVHDTNYSRFLGM---VEALTLLENETVAIIGPQFSVIAHLVSHIANE 119
N ++L L L ++DT G+ +A+ N + G V + S IA
Sbjct: 49 NESLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLMVFGG----VCPSVTSIIAES 104
Query: 120 FQ---VPLLSFAATDPSLS-SLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD 175
Q + LSFAAT P L+ +YP+F RT SD AI ++ ++ W+ V L D
Sbjct: 105 LQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDV 164
Query: 176 DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWG 235
L L + +S S N ++ + RI++
Sbjct: 165 QRFSEVRNDLTGVLYGEDIEISDTESFS-----NDPCTSVKKLKGNDVRIILGQFDQNMA 219
Query: 236 LEVLNAAKHLRMMESGYVWIVTDW--------LSSILDTDSQLHSEKMDDIQGVLTLRMY 287
+V A M S Y WI+ W + + ++ L + ++G + +
Sbjct: 220 AKVFCCAYEENMYGSKYQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFE 279
Query: 288 TQSSEEKRKFVTRWRHLTRR--NTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNIS 345
SS++ + + R N +G + F YAYD +W++A +
Sbjct: 280 PLSSKQIKTISGKTPQQYEREYNNKRSGVGPSKFHGYAYDGIWVIAKTL----------- 328
Query: 346 FSEDSKLSELSRGDMRFSSVSIFNG-----GKMLLDNILQVNMTGVTGPIKF 392
+ E R + FN G+++L+ + + N GVTG + F
Sbjct: 329 ----QRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF 376
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 80/408 (19%), Positives = 153/408 (37%), Gaps = 72/408 (17%)
Query: 139 YPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSH 198
+PF ++ + DL A+ +++Y+ W LY D D G + + A+ D AEK+ +++
Sbjct: 98 HPFVIQM-RPDL--KGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTA 153
Query: 199 -KVPLSPKGSRNQIIDTLLT-VSSMMSRILILHTY-----DIWGLEVLNAAKHLRMMESG 251
V +++ +L + R +IL DI +V+ KH++ G
Sbjct: 154 INVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVD-QVITIGKHVK----G 208
Query: 252 YVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLN 311
Y +I+ +++ TD L + + V ++ KF+ RW L +
Sbjct: 209 YHYII----ANLGFTDGDLLKIQFGGAE-VSGFQIVDYDDSLVSKFIERWSTLEEKEYPG 263
Query: 312 GPIGLNSF-GLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNG 370
+ YD + ++ A Q IS ++ GD + +
Sbjct: 264 AHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNA-------GDCLANPAVPWGQ 316
Query: 371 GKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLSVVPP 430
G + + QV + G++G IKF + IN ++ + G R+IGYWS + +
Sbjct: 317 GVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVLTED 376
Query: 431 EALYKEPSNRSASSQHLYSAVWPGQTTQKPRGWVFPNNGRHLRIGVPSQVIYPEFV---- 486
+ +G + V + ++ +V
Sbjct: 377 D-----------------------------------TSGLEQKTVVVTTILESPYVMMKA 401
Query: 487 --AQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFD 532
A G +++ GYC+D+ + + + YKL GDG + D
Sbjct: 402 NHAALAGNERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDAD 447
>pdb|3H5V|A Chain A, Crystal Structure Of The Glur2-atd
pdb|3H5V|B Chain B, Crystal Structure Of The Glur2-atd
pdb|3H5V|C Chain C, Crystal Structure Of The Glur2-atd
pdb|3H5W|A Chain A, Crystal Structure Of The Glur2-Atd In Space Group P212121
Without Solvent
pdb|3H5W|B Chain B, Crystal Structure Of The Glur2-Atd In Space Group P212121
Without Solvent
Length = 394
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 66/301 (21%), Positives = 121/301 (40%), Gaps = 29/301 (9%)
Query: 139 YPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSH 198
+PF ++ + DL A+ +++Y+ W LY D D G + + A+ D AEK+ +++
Sbjct: 106 HPFVIQM-RPDL--KGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTA 161
Query: 199 -KVPLSPKGSRNQIIDTLLT-VSSMMSRILILHTY-----DIWGLEVLNAAKHLRMMESG 251
V +++ +L + R +IL DI +V+ KH++ G
Sbjct: 162 INVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVD-QVITIGKHVK----G 216
Query: 252 YVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLN 311
Y +I+ +++ TD L + V ++ KF+ RW L +
Sbjct: 217 YHYII----ANLGFTDGDLLKIQFGGAN-VSGFQIVDYDDSLVSKFIERWSTLEEKEYPG 271
Query: 312 GPIGLNSF-GLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNG 370
+ YD + ++ A Q IS ++ GD + +
Sbjct: 272 AHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNA-------GDCLANPAVPWGQ 324
Query: 371 GKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLSVVPP 430
G + + QV + G++G IKF + IN ++ + G R+IGYWS + V
Sbjct: 325 GVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVVTLT 384
Query: 431 E 431
E
Sbjct: 385 E 385
>pdb|4GPA|A Chain A, High Resolution Structure Of The Glua4 N-Terminal Domain
(Ntd)
Length = 389
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/284 (19%), Positives = 116/284 (40%), Gaps = 33/284 (11%)
Query: 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSH-KVPLSPKGSRNQII 212
A+ ++D++ W + LY D D G + + A+ +K + +S V S Q++
Sbjct: 119 GALLSLLDHYEWNCFVFLY-DTDRGYSILQAIMEKAGQNGWHVSAICVENFNDVSYRQLL 177
Query: 213 DTL-------LTVSSMMSRIL-ILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSIL 264
+ L + + R+ IL ++++ KH++ GY +I+ + +
Sbjct: 178 EELDRRQEKKFVIDCEIERLQNILE-------QIVSVGKHVK----GYHYIIANLGFKDI 226
Query: 265 DTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAY 324
+ +H V ++ ++ K + RW+ L +R Y
Sbjct: 227 SLERFIHGGA-----NVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSETPPKYTSALTY 281
Query: 325 DTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMT 384
D + ++A + Q +IS ++ GD + + + G + + QV +
Sbjct: 282 DGVLVMAETFRSLRRQKIDISRRGNA-------GDCLANPAAPWGQGIDMERTLKQVRIQ 334
Query: 385 GVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLSVV 428
G+TG ++F +N +V + TG R++GYW++ L ++
Sbjct: 335 GLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDKLVLI 378
>pdb|2WJW|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 1.8 A Resolution
pdb|2WJX|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|B Chain B, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|C Chain C, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
Length = 388
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/301 (21%), Positives = 122/301 (40%), Gaps = 29/301 (9%)
Query: 139 YPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSH 198
+PF ++ + DL A+ +++Y+ W LY D D G + + A+ D AEK+ +++
Sbjct: 98 HPFVIQM-RPDL--KGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTA 153
Query: 199 -KVPLSPKGSRNQIIDTLLT-VSSMMSRILILHTY-----DIWGLEVLNAAKHLRMMESG 251
V ++++ +L + R +IL DI +V+ KH++ G
Sbjct: 154 INVGNINNDKKDEMYRSLFQDLELKKERRVILDCERDKVNDIVD-QVITIGKHVK----G 208
Query: 252 YVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLN 311
Y +I+ +++ TD L + V ++ KF+ RW L +
Sbjct: 209 YHYII----ANLGFTDGDLLKIQFGGAN-VSGFQIVDYDDSLVSKFIERWSTLEEKEYPG 263
Query: 312 G-PIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNG 370
+ YD + ++ A Q IS ++ GD + +
Sbjct: 264 AHTTTIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNA-------GDCLANPAVPWGQ 316
Query: 371 GKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLSVVPP 430
G + + QV + G++G IKF + IN ++ + G R+IGYWS + V
Sbjct: 317 GVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVVTLT 376
Query: 431 E 431
E
Sbjct: 377 E 377
>pdb|3HSY|A Chain A, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
pdb|3HSY|B Chain B, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
Length = 376
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/290 (22%), Positives = 118/290 (40%), Gaps = 29/290 (10%)
Query: 139 YPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSH 198
+PF ++ + DL A+ +++Y+ W LY D D G + + A+ D AEK+ +++
Sbjct: 98 HPFVIQM-RPDL--KGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTA 153
Query: 199 -KVPLSPKGSRNQIIDTLLT-VSSMMSRILILHTY-----DIWGLEVLNAAKHLRMMESG 251
V +++ +L + R +IL DI +V+ KH++ G
Sbjct: 154 INVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVD-QVITIGKHVK----G 208
Query: 252 YVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLN 311
Y +I+ +++ TD L + V ++ KF+ RW L +
Sbjct: 209 YHYII----ANLGFTDGDLLKIQFGGAN-VSGFQIVDYDDSLVSKFIERWSTLEEKEYPG 263
Query: 312 GPIGLNSF-GLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNG 370
+ YD + ++ A Q IS ++ GD + +
Sbjct: 264 AHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNA-------GDCLANPAVPWGQ 316
Query: 371 GKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWS 420
G + + QV + G++G IKF + IN ++ + G R+IGYWS
Sbjct: 317 GVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWS 366
>pdb|3N6V|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|C Chain C, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|D Chain D, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|E Chain E, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|F Chain F, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
Length = 374
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/290 (22%), Positives = 118/290 (40%), Gaps = 29/290 (10%)
Query: 139 YPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSH 198
+PF ++ + DL A+ +++Y+ W LY D D G + + A+ D AEK+ +++
Sbjct: 96 HPFVIQM-RPDL--KGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTA 151
Query: 199 -KVPLSPKGSRNQIIDTLLT-VSSMMSRILILHTY-----DIWGLEVLNAAKHLRMMESG 251
V +++ +L + R +IL DI +V+ KH++ G
Sbjct: 152 INVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVD-QVITIGKHVK----G 206
Query: 252 YVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLN 311
Y +I+ +++ TD L + V ++ KF+ RW L +
Sbjct: 207 YHYII----ANLGFTDGDLLKIQFGGAN-VSGFQIVDYDDSLVSKFIERWSTLEEKEYPG 261
Query: 312 GPIGLNSF-GLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNG 370
+ YD + ++ A Q IS ++ GD + +
Sbjct: 262 AHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNA-------GDCLANPAVPWGQ 314
Query: 371 GKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWS 420
G + + QV + G++G IKF + IN ++ + G R+IGYWS
Sbjct: 315 GVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWS 364
>pdb|3O2J|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
pdb|3O2J|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
Length = 388
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/290 (22%), Positives = 118/290 (40%), Gaps = 29/290 (10%)
Query: 139 YPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSH 198
+PF ++ + DL A+ +++Y+ W LY D D G + + A+ D AEK+ +++
Sbjct: 101 HPFVIQM-RPDL--KGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTA 156
Query: 199 -KVPLSPKGSRNQIIDTLLT-VSSMMSRILILHTY-----DIWGLEVLNAAKHLRMMESG 251
V +++ +L + R +IL DI +V+ KH++ G
Sbjct: 157 INVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVD-QVITIGKHVK----G 211
Query: 252 YVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLN 311
Y +I+ +++ TD L + V ++ KF+ RW L +
Sbjct: 212 YHYII----ANLGFTDGDLLKIQFGGAN-VSGFQIVDYDDSLVSKFIERWSTLEEKEYPG 266
Query: 312 GPIGLNSF-GLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNG 370
+ YD + ++ A Q IS ++ GD + +
Sbjct: 267 AHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNA-------GDCLANPAVPWGQ 319
Query: 371 GKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWS 420
G + + QV + G++G IKF + IN ++ + G R+IGYWS
Sbjct: 320 GVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWS 369
>pdb|3SAJ|A Chain A, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|B Chain B, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|C Chain C, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|D Chain D, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
Length = 384
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/284 (20%), Positives = 112/284 (39%), Gaps = 20/284 (7%)
Query: 155 AIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLS--HKVPLSPKGSRNQII 212
A+ I+D++ W+ + +Y D D G + + + D AEK +++ + + + +G R
Sbjct: 118 ALISIIDHYKWQTFVYIY-DADRGLSVLQRVLDTAAEKNWQVTAVNILTTTEEGYRMLFQ 176
Query: 213 DTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHS 272
D + R++++ +L L GY +I+ + +D D
Sbjct: 177 D----LEKKKERLVVVDCESERLNAILGQIVKLEKNGIGYHYILANL--GFMDIDLNKFK 230
Query: 273 EKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSF-GLYAYDTLWLLA 331
E ++ G L YT + + + +WR R+ + YD + ++A
Sbjct: 231 ESGANVTG-FQLVNYTDTIPAR--IMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVMA 287
Query: 332 HAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIK 391
A + Q +IS ++ GD + + G + + QV G+TG ++
Sbjct: 288 EAFQSLRRQRIDISRRGNA-------GDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQ 340
Query: 392 FTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLSVVPPEALYK 435
F N VI + G R+IGYW+ E L++
Sbjct: 341 FNEKGRRTNYTLHVIEMKHDGIRKIGYWNEDDKFVPAALEVLFQ 384
>pdb|3QEL|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|C Chain C, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|C Chain C, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 383
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 30/171 (17%)
Query: 113 VSHIANEFQVPLLSFAA-----TDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRN 167
+S+ A +++P++ +D S+ + F+RT +Q +++ F W +
Sbjct: 85 ISYTAGFYRIPVIGLTTRMSIYSDKSI----HLSFLRTVPPYSHQALVWFEMMRLFNWNH 140
Query: 168 VIALYVDDDHGRNGIAALGDKLAEKRCR-----------LSHKVPLSPK---------GS 207
VI + DD GR L L K + LS+ PK G+
Sbjct: 141 VILIVSDDHEGRAAQKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGT 200
Query: 208 RNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD 258
+N + LL + +R++IL + V +A L M +GYVW+V +
Sbjct: 201 KN-LTALLLEAKELEARVIILSASEDDATAVYKSAAMLDMTGAGYVWLVGE 250
>pdb|3QLT|A Chain A, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLT|B Chain B, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLU|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLU|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
Length = 395
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 84/387 (21%), Positives = 144/387 (37%), Gaps = 50/387 (12%)
Query: 61 NSNPAILGGTKLKLTVHDTN-YSRFLGMVEALTLLENETVAIIGPQFSVIAHLVSHIANE 119
N N +L T L N Y F +A L AI GP S A+ V I N
Sbjct: 34 NRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNA 93
Query: 120 FQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMA-AIADIVDYFGWRNVIALYVDDDHG 178
VP + +S + F+V + D ++ AI D+V +F W+ V +Y DD G
Sbjct: 94 LGVPHIQ-TRWKHQVSDNKDSFYV-SLYPDFSSLSRAILDLVQFFKWKTVTVVY-DDSTG 150
Query: 179 RNGIAALGDKLAEKRCRLS-HKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT-YDI--- 233
+ L + RL ++P K ++ + + M R H +D
Sbjct: 151 LIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKE--------MKRGKEFHVIFDCSHE 202
Query: 234 WGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGV--LTLRMYTQSS 291
+L A ++ MM Y +I T LD + +S GV R+ +
Sbjct: 203 MAAGILKQALNMSMMTEYYHYIFTTLDLFALDVEPYRYS-------GVNMTGFRILNTEN 255
Query: 292 EEKRKFVTRWRHLTRRNTLNGPIG--LNSF----GLYAYDTLWLLAHAIGAFFDQGGNIS 345
+ + +W + R P L+ F YD + +++ A+ F
Sbjct: 256 TQVSSIIEKWS-MERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQF-------- 306
Query: 346 FSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDL-INPAYE 404
+++ ++ + + G + I + + G+TG I F L + +
Sbjct: 307 -------PQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLD 359
Query: 405 VINVIGTGSRRIGYWSNHSGLSVVPPE 431
VI++ G +IG W SGL++ +
Sbjct: 360 VISLKEEGLEKIGTWDPASGLNMTESQ 386
>pdb|3H6G|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6G|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6H|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3H6H|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3QLV|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|F Chain F, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|H Chain H, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|J Chain J, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
Length = 395
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 50/120 (41%), Gaps = 5/120 (4%)
Query: 61 NSNPAILGGTKLKLTVHDTN-YSRFLGMVEALTLLENETVAIIGPQFSVIAHLVSHIANE 119
N N +L T L N Y F +A L AI GP S A+ V I N
Sbjct: 34 NRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNA 93
Query: 120 FQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMA-AIADIVDYFGWRNVIALYVDDDHG 178
VP + +S + F+V + D ++ AI D+V +F W+ V +Y DD G
Sbjct: 94 LGVPHIQ-TRWKHQVSDNKDSFYV-SLYPDFSSLSRAILDLVQFFKWKTVTVVY-DDSTG 150
>pdb|3OM0|A Chain A, Crystal Structure Of The Gluk5 (Ka2) Atd Crystallographic
Dimer At 1.4 Angstrom Resolution
pdb|3OM1|A Chain A, Crystal Structure Of The Gluk5 (Ka2) Atd Dimer At 1.7
Angstrom Resolution
pdb|3OM1|B Chain B, Crystal Structure Of The Gluk5 (Ka2) Atd Dimer At 1.7
Angstrom Resolution
pdb|3QLU|A Chain A, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLU|B Chain B, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLV|A Chain A, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|B Chain B, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|E Chain E, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|G Chain G, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|I Chain I, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
Length = 393
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 24/194 (12%)
Query: 238 VLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSS----EE 293
VL A L M + Y +I+T IL D ++D +L M+ S E
Sbjct: 207 VLRKASELGMTSAFYKYILTTMDFPILHLDG-----IVEDSSNILGFSMFNTSHPFYPEF 261
Query: 294 KRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLS 353
R WR +T GP L++ ++ D + ++ A+ E ++
Sbjct: 262 VRSLNMSWRENCEASTYPGP-ALSAALMF--DAVHVVVSAV------------RELNRSQ 306
Query: 354 ELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGS 413
E+ + +S +I+ G L++ + V G+TG ++F S N ++ G
Sbjct: 307 EIGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGH 366
Query: 414 RRIGYWSNHSGLSV 427
R IG W ++ L++
Sbjct: 367 REIGVWYSNRTLAM 380
>pdb|3QEK|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Glun1
pdb|3QEK|B Chain B, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Glun1
Length = 384
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 69/168 (41%), Gaps = 24/168 (14%)
Query: 113 VSHIANEFQVPLLSFAATDPSLSSLQ--YPFFVRTTQSDLYQMAAIADIVDYFGWRNVIA 170
+S+ A +++P++ T S+ S + + F+RT +Q + F W +VI
Sbjct: 86 ISYTAGFYRIPVIGLT-TRXSIYSDKSIHLSFLRTVPPYSHQALVWFEXXRLFNWNHVIL 144
Query: 171 LYVDDDHGRNGIAALGDKLAEKRCR-----------LSHKVPLSPK---------GSRNQ 210
+ DD GR L L K + LS+ PK G++N
Sbjct: 145 IVSDDHEGRAAQKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTKN- 203
Query: 211 IIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD 258
+ LL + +R++IL + V +A L +GYVW+V +
Sbjct: 204 LTALLLEAKELEARVIILSASEDDATAVYKSAAXLDXTGAGYVWLVGE 251
>pdb|3OLZ|A Chain A, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
pdb|3OLZ|B Chain B, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
Length = 398
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 87/410 (21%), Positives = 145/410 (35%), Gaps = 36/410 (8%)
Query: 29 IPPVLNIGAVFAL----NSTIGXXXXXXXXXXXXXXNSNPAILGGTKLKLTVHDTNY-SR 83
+P V+ IG +F N+ + N N +L T L + ++
Sbjct: 1 MPHVIRIGGIFEYADGPNAQVMNAEEHAFRFSANIINRNRTLLPNTTLTYDIQRIHFHDS 60
Query: 84 FLGMVEALTLLENETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFV 143
F +A L VAI GP + V I N +VP + L + + F+V
Sbjct: 61 FEATKKACDQLALGVVAIFGPSQGSCTNAVQSICNALEVPHIQLRWKHHPLDN-KDTFYV 119
Query: 144 RTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLS-HKVPL 202
AI D+V WR+ +Y DD G + L + RL ++P+
Sbjct: 120 NLYPDYASLSHAILDLVQSLKWRSATVVY-DDSTGLIRLQELIMAPSRYNIRLKIRQLPI 178
Query: 203 SPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSS 262
SR L + +I ++L A + MM Y +I T
Sbjct: 179 DSDDSR----PLLKEMKRGREFRIIFDCSHTMAAQILKQAMAMGMMTEYYHFIFTTLDLY 234
Query: 263 ILDTDSQLHSEKMDDIQGV-LT-LRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFG 320
LD + +S GV LT R+ + V +W + GL G
Sbjct: 235 ALDLEPYRYS-------GVNLTGFRILNVDNPHVSAIVEKWSMERLQAAPRAESGLLD-G 286
Query: 321 LYAYDT--LWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNI 378
+ D L+ H + + + ++ + L RF GG+ ++ I
Sbjct: 287 VMMTDAALLYDAVHIVSVCYQRAPQMTV---NSLQCHRHKAWRF-------GGR-FMNFI 335
Query: 379 LQVNMTGVTGPIKFTSDRDL-INPAYEVINVIGTGSRRIGYWSNHSGLSV 427
+ G+TG I F L + ++I++ G ++G WS GL++
Sbjct: 336 KEAQWEGLTGRIVFNKTSGLRTDFDLDIISLKEDGLEKVGVWSPADGLNI 385
>pdb|3O21|A Chain A, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|B Chain B, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|C Chain C, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|D Chain D, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3P3W|A Chain A, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|B Chain B, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|C Chain C, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|D Chain D, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
Length = 389
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 12/132 (9%)
Query: 295 RKFVTRWRHLTRRN---TLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSK 351
++F+ RW L R N P+ S +D + ++A A Q ++S
Sbjct: 253 QQFIQRWVRLDEREFPEAKNAPLKYTS--ALTHDAILVIAEAFRYLRRQRVDVS------ 304
Query: 352 LSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGT 411
S GD + ++ G + + V + G+TG I+F + N +V + +
Sbjct: 305 -RRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVS 363
Query: 412 GSRRIGYWSNHS 423
GSR+ GYW+ +
Sbjct: 364 GSRKAGYWNEYE 375
>pdb|3TD9|A Chain A, Crystal Structure Of A Leucine Binding Protein Livk
(Tm1135) From Thermotoga Maritima Msb8 At 1.90 A
Resolution
Length = 366
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 61 NSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETV-AIIGPQFSVIAHLVSHIANE 119
P +LG +++L + DT + A ++ E V AIIG S + ++ IA E
Sbjct: 45 EEKPTVLG-EEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIGEVASAHSLAIAPIAEE 103
Query: 120 FQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYV 173
+VP ++ A+T+P L + F R D +Q AA A F ++N+ A V
Sbjct: 104 NKVPXVTPASTNP-LVTQGRKFVSRVCFIDPFQGAAXA----VFAYKNLGAKRV 152
>pdb|2ZNS|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With
Glutamate
pdb|2ZNT|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Dysiherbaine
pdb|2ZNU|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Neodysiherbaine A
pdb|3FUZ|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FUZ|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FV1|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV1|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV2|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FV2|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FVG|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVG|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVK|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVK|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVO|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
pdb|3FVO|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
Length = 256
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 491 GTDKFSGYCIDVFTAVLELLPYAVPYKLVPFG 522
G D+F GYC+D+ + +L + KLVP G
Sbjct: 27 GNDRFEGYCLDLLKELSNILGFIYDVKLVPDG 58
>pdb|2F34|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F34|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F35|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F35|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F36|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2OJT|A Chain A, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2OJT|B Chain B, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2QS1|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS1|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS2|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS2|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS3|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS3|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS4|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
Length = 258
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 491 GTDKFSGYCIDVFTAVLELLPYAVPYKLVPFG 522
G D+F GYC+D+ + +L + KLVP G
Sbjct: 28 GNDRFEGYCLDLLKELSNILGFLYDVKLVPDG 59
>pdb|1TXF|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core In
Complex With Glutamate At 2.1 Angstrom Resolution
pdb|3C31|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C31|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C32|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C32|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C33|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C33|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C34|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C34|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C35|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C35|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C36|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
pdb|3C36|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
Length = 258
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 491 GTDKFSGYCIDVFTAVLELLPYAVPYKLVPFG 522
G D+F GYC+D+ + +L + KLVP G
Sbjct: 28 GNDRFEGYCLDLLKELSNILGFLYDVKLVPDG 59
>pdb|2WKY|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
pdb|2WKY|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
Length = 258
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 491 GTDKFSGYCIDVFTAVLELLPYAVPYKLVPFG 522
G D+F GYC+D+ + +L + KLVP G
Sbjct: 28 GNDRFEGYCLDLLKELSNILGFLYDVKLVPDG 59
>pdb|1YCJ|A Chain A, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1YCJ|B Chain B, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1VSO|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Antagonist (S)-Atpo At 1.85 A
Resolution
pdb|2PBW|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|2PBW|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|3GBA|A Chain A, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|B Chain B, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|C Chain C, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|D Chain D, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBB|A Chain A, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3GBB|B Chain B, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3S2V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|3S2V|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|4E0X|A Chain A, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4E0X|B Chain B, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4DLD|A Chain A, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
pdb|4DLD|B Chain B, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
Length = 257
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 491 GTDKFSGYCIDVFTAVLELLPYAVPYKLVPFG 522
G D+F GYC+D+ + +L + KLVP G
Sbjct: 28 GNDRFEGYCLDLLKELSNILGFLYDVKLVPDG 59
>pdb|3U92|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U92|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U93|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U93|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U94|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|C Chain C, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|D Chain D, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
Length = 257
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 491 GTDKFSGYCIDVFTAVLELLPYAVPYKLVPFG 522
G D+F GYCID+ + +L ++ +LV G
Sbjct: 28 GNDRFEGYCIDLLKELAHILGFSYEIRLVEDG 59
>pdb|3S9E|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|3S9E|B Chain B, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|4E0W|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With Kainate
pdb|4G8N|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3
Ligand-Binding Domain In Complex With The Agonist G8m
Length = 258
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 491 GTDKFSGYCIDVFTAVLELLPYAVPYKLVPFG 522
G D+F GYCID+ + +L ++ +LV G
Sbjct: 30 GNDRFEGYCIDLLKELAHILGFSYEIRLVEDG 61
>pdb|3QXM|A Chain A, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
pdb|3QXM|B Chain B, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
Length = 258
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 491 GTDKFSGYCIDVFTAVLELLPYAVPYKLVPFG 522
G D+F GYCID+ + +L + +LV G
Sbjct: 27 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDG 58
>pdb|3G3G|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
pdb|3G3G|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
Length = 259
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 491 GTDKFSGYCIDVFTAVLELLPYAVPYKLVPFG 522
G D+F GYCID+ + +L + +LV G
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDG 59
>pdb|3G3H|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
pdb|3G3H|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
Length = 259
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 491 GTDKFSGYCIDVFTAVLELLPYAVPYKLVPFG 522
G D+F GYCID+ + +L + +LV G
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDG 59
>pdb|1S50|A Chain A, X-Ray Structure Of The Glur6 Ligand Binding Core (S1s2a)
In Complex With Glutamate At 1.65 A Resolution
pdb|1S7Y|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S7Y|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S9T|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1S9T|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1SD3|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1SD3|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1TT1|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|1TT1|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|3G3F|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
pdb|3G3F|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
Length = 259
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 491 GTDKFSGYCIDVFTAVLELLPYAVPYKLVPFG 522
G D+F GYCID+ + +L + +LV G
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDG 59
>pdb|2I0B|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|C Chain C, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
Length = 259
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 491 GTDKFSGYCIDVFTAVLELLPYAVPYKLVPFG 522
G D+F GYCID+ + +L + +LV G
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDG 59
>pdb|1YAE|A Chain A, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|B Chain B, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|C Chain C, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|D Chain D, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|E Chain E, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|F Chain F, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
Length = 312
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 491 GTDKFSGYCIDVFTAVLELLPYAVPYKLVPFG 522
G D+F GYCID+ + +L + +LV G
Sbjct: 37 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDG 68
>pdb|1HM2|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-Oligosaccharide Complexes And
Mutagenesis
pdb|1HM3|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-Oligosaccharide Complexes And
Mutagenesis
pdb|1HMU|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-oligosaccharide Complexes And
Mutagenesis
pdb|1HMW|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-oligosaccharide Complexes And
Mutagenesis
Length = 700
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 310 LNGPI----GLNSFG----LYAYDTLWLLAHAIGAFFDQGGNISFSEDSK 351
LNGP+ G G A WLL AIG +F +G N+S S S+
Sbjct: 493 LNGPVISTAGKTGRGKITTFKAQGQFWLLHDAIGYYFPEGANLSLSTQSQ 542
>pdb|4F2O|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F2Q|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F31|B Chain B, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F31|D Chain D, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F3B|A Chain A, Glutamate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 480 VIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGH 525
V+Y + Q +G +++ GYC+D+ + + + + YKL GDG
Sbjct: 14 VMYKKNHEQLEGNERYEGYCVDLAYEIAKHV--RIKYKLSIVGDGK 57
>pdb|2XXR|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXR|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXT|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
pdb|2XXT|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
Length = 261
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 491 GTDKFSGYCIDVFTAVLELLPYAVPYKLVPFG 522
G D+F GYCID+ + +L + +LV G
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDG 59
>pdb|3M3F|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua3 (Flop
Form)
pdb|3M3K|A Chain A, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|C Chain C, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|E Chain E, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|4F1Y|A Chain A, Cnqx Bound To The Ligand Binding Domain Of Glua3
pdb|4F1Y|C Chain C, Cnqx Bound To The Ligand Binding Domain Of Glua3
Length = 258
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 480 VIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGH 525
V+Y + Q +G +++ GYC+D+ + + + + YKL GDG
Sbjct: 14 VMYKKNHEQLEGNERYEGYCVDLAYEIAKHV--RIKYKLSIVGDGK 57
>pdb|1CB8|A Chain A, Chondroitinase Ac Lyase From Flavobacterium Heparinum
Length = 678
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 310 LNGPI----GLNSFG----LYAYDTLWLLAHAIGAFFDQGGNISFSEDSK 351
LNGP+ G G A WLL AIG +F +G N+S S S+
Sbjct: 471 LNGPVISTAGKTGRGKITTFKAQGQFWLLHDAIGYYFPEGANLSLSTQSQ 520
>pdb|2XXW|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXW|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXX|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXY|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 491 GTDKFSGYCIDVFTAVLELLPYAVPYKLVPFG 522
G D+F GYCID+ + +L + +LV G
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDG 59
>pdb|2XXU|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXU|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXV|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
pdb|2XXV|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 491 GTDKFSGYCIDVFTAVLELLPYAVPYKLVPFG 522
G D+F GYCID+ + +L + +LV G
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDG 59
>pdb|2I0C|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
pdb|2I0C|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
Length = 259
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 491 GTDKFSGYCIDVFTAVLELLPYAVPYKLVPFG 522
G D+F GYCID+ + +L + +LV G
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDG 59
>pdb|3DP4|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Ampa
pdb|3DLN|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Glutamate
Length = 278
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 480 VIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGH 525
V+Y + Q +G +++ GYC+D+ + + + + YKL GDG
Sbjct: 33 VMYKKNHEQLEGNERYEGYCVDLAYEIAKHV--RIKYKLSIVGDGK 76
>pdb|3LSW|A Chain A, Aniracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3LSX|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3RT6|B Chain B, Fluorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|3RT8|A Chain A, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|4F29|A Chain A, Quisqualate Bound To The Ligand Binding Domain Of Glua3i
pdb|4F39|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3
pdb|4F3G|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3i
Length = 258
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 480 VIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGH 525
V+Y + Q +G +++ GYC+D+ + + + + YKL GDG
Sbjct: 14 VMYKKNHEQLEGNERYEGYCVDLAYEIAKHV--RIKYKLSIVGDGK 57
>pdb|4F22|A Chain A, Kainate Bound To The K660a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 480 VIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGH 525
V+Y + Q +G +++ GYC+D+ + + + + YKL GDG
Sbjct: 14 VMYKKNHEQLEGNERYEGYCVDLAYEIAKHV--RIKYKLSIVGDGK 57
>pdb|3FAT|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|C Chain C, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAS|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
pdb|3FAS|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
Length = 260
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 480 VIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFD 532
V+Y + +G DK+ GYC+D+ + + + + + YK+ DG + D
Sbjct: 15 VMYKKNHEMFEGNDKYEGYCVDLASEIAKHI--GIKYKIAIVPDGKYGARDAD 65
>pdb|3EN3|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Kainate
pdb|3EPE|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
pdb|3EPE|B Chain B, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
Length = 257
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 480 VIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFD 532
V+Y + +G DK+ GYC+D+ + + + + + YK+ DG + D
Sbjct: 13 VMYKKNHEMFEGNDKYEGYCVDLASEIAKHI--GIKYKIAIVPDGKYGARDAD 63
>pdb|3KEI|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KEI|B Chain B, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KFM|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Kainate
Length = 257
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 480 VIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFD 532
V+Y + +G DK+ GYC+D+ + + + + + YK+ DG + D
Sbjct: 13 VMYKKNHEMFEGNDKYEGYCVDLASEIAKHI--GIKYKIAIVPDGKYGARDAD 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,394,043
Number of Sequences: 62578
Number of extensions: 675801
Number of successful extensions: 1706
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1643
Number of HSP's gapped (non-prelim): 65
length of query: 574
length of database: 14,973,337
effective HSP length: 104
effective length of query: 470
effective length of database: 8,465,225
effective search space: 3978655750
effective search space used: 3978655750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)