Query 008205
Match_columns 574
No_of_seqs 289 out of 2989
Neff 10.2
Searched_HMMs 46136
Date Thu Mar 28 20:50:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008205.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008205hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1054 Glutamate-gated AMPA-t 100.0 8.9E-64 1.9E-68 479.5 38.2 483 28-572 22-523 (897)
2 cd06392 PBP1_iGluR_delta_1 N-t 100.0 3E-55 6.5E-60 436.2 40.0 368 34-426 1-399 (400)
3 cd06387 PBP1_iGluR_AMPA_GluR3 100.0 1.2E-54 2.7E-59 430.8 40.4 366 34-425 1-371 (372)
4 cd06390 PBP1_iGluR_AMPA_GluR1 100.0 3.7E-54 8.1E-59 428.8 38.8 359 34-425 1-363 (364)
5 cd06393 PBP1_iGluR_Kainate_Glu 100.0 3.7E-52 8E-57 422.2 40.6 371 32-427 2-383 (384)
6 cd06388 PBP1_iGluR_AMPA_GluR4 100.0 7.1E-51 1.5E-55 407.3 40.8 365 34-426 1-370 (371)
7 KOG4440 NMDA selective glutama 100.0 6.1E-52 1.3E-56 400.1 30.6 452 27-568 30-543 (993)
8 cd06374 PBP1_mGluR_groupI Liga 100.0 9.6E-51 2.1E-55 422.2 41.0 380 27-427 4-469 (472)
9 cd06391 PBP1_iGluR_delta_2 N-t 100.0 1.7E-50 3.6E-55 406.9 40.9 369 34-426 1-399 (400)
10 cd06389 PBP1_iGluR_AMPA_GluR2 100.0 2.5E-50 5.5E-55 404.5 39.7 363 34-426 1-369 (370)
11 cd06362 PBP1_mGluR Ligand bind 100.0 6.3E-50 1.4E-54 415.7 41.1 376 31-426 1-451 (452)
12 cd06375 PBP1_mGluR_groupII Lig 100.0 1.9E-49 4.1E-54 408.8 41.9 369 31-421 1-454 (458)
13 cd06365 PBP1_Pheromone_recepto 100.0 1.4E-49 3E-54 411.5 39.0 370 31-421 1-452 (469)
14 cd06380 PBP1_iGluR_AMPA N-term 100.0 4.9E-49 1.1E-53 400.4 41.6 375 34-425 1-381 (382)
15 cd06376 PBP1_mGluR_groupIII Li 100.0 4.5E-49 9.8E-54 409.0 41.9 371 31-421 1-452 (463)
16 cd06364 PBP1_CaSR Ligand-bindi 100.0 1.1E-48 2.4E-53 407.1 42.6 378 27-422 7-494 (510)
17 cd06379 PBP1_iGluR_NMDA_NR1 N- 100.0 1.1E-48 2.3E-53 396.7 41.0 336 30-422 17-364 (377)
18 cd06361 PBP1_GPC6A_like Ligand 100.0 8.8E-48 1.9E-52 389.8 40.6 333 46-423 34-395 (403)
19 cd06367 PBP1_iGluR_NMDA N-term 100.0 5.6E-48 1.2E-52 389.7 37.6 339 32-421 2-351 (362)
20 cd06394 PBP1_iGluR_Kainate_KA1 100.0 1.8E-48 3.9E-53 380.8 29.3 326 34-427 1-333 (333)
21 cd06386 PBP1_NPR_C_like Ligand 100.0 1.4E-46 3.1E-51 381.1 41.2 356 36-422 3-379 (387)
22 KOG1053 Glutamate-gated NMDA-t 100.0 3.6E-46 7.8E-51 373.3 41.4 413 80-573 82-542 (1258)
23 cd06372 PBP1_GC_G_like Ligand- 100.0 8.1E-45 1.8E-49 370.4 40.5 360 34-423 1-387 (391)
24 cd06385 PBP1_NPR_A Ligand-bind 100.0 3.7E-45 8.1E-50 374.5 37.7 362 34-423 1-392 (405)
25 KOG1056 Glutamate-gated metabo 100.0 4.3E-45 9.4E-50 377.9 37.9 398 26-464 25-494 (878)
26 cd06370 PBP1_Speract_GC_like L 100.0 7.4E-45 1.6E-49 371.3 38.9 351 33-412 1-385 (404)
27 cd06363 PBP1_Taste_receptor Li 100.0 1.2E-44 2.7E-49 370.4 40.2 352 28-422 2-396 (410)
28 cd06366 PBP1_GABAb_receptor Li 100.0 1E-44 2.2E-49 364.7 38.0 343 34-427 1-348 (350)
29 cd06373 PBP1_NPR_like Ligand b 100.0 2.5E-44 5.4E-49 367.5 38.5 363 34-423 1-390 (396)
30 cd06382 PBP1_iGluR_Kainate N-t 100.0 1.4E-44 3E-49 360.1 32.5 321 34-425 1-326 (327)
31 cd06371 PBP1_sensory_GC_DEF_li 100.0 4.4E-43 9.6E-48 354.6 38.7 349 34-416 1-366 (382)
32 cd06352 PBP1_NPR_GC_like Ligan 100.0 6.7E-43 1.5E-47 356.8 40.1 364 34-423 1-383 (389)
33 cd06384 PBP1_NPR_B Ligand-bind 100.0 9.9E-43 2.2E-47 355.3 39.5 362 34-423 1-393 (399)
34 cd06381 PBP1_iGluR_delta_like 100.0 2.8E-42 6E-47 343.5 37.5 335 34-426 1-363 (363)
35 PF01094 ANF_receptor: Recepto 100.0 2E-42 4.3E-47 348.7 33.7 339 49-409 2-348 (348)
36 cd06377 PBP1_iGluR_NMDA_NR3 N- 100.0 2E-41 4.2E-46 330.7 38.5 344 28-427 14-376 (382)
37 cd06378 PBP1_iGluR_NMDA_NR2 N- 100.0 7.6E-42 1.6E-46 339.8 31.3 313 70-428 33-356 (362)
38 cd06383 PBP1_iGluR_AMPA_Like N 100.0 1.7E-42 3.7E-47 345.7 26.3 335 43-405 8-357 (368)
39 cd06368 PBP1_iGluR_non_NMDA_li 100.0 1.1E-40 2.4E-45 332.0 33.5 321 34-425 1-323 (324)
40 cd06342 PBP1_ABC_LIVBP_like Ty 100.0 3.7E-37 8E-42 308.2 35.7 328 34-408 1-334 (334)
41 cd06350 PBP1_GPCR_family_C_lik 100.0 2.9E-37 6.3E-42 310.7 32.7 308 34-422 1-340 (348)
42 PRK15404 leucine ABC transport 100.0 2E-36 4.3E-41 304.6 38.0 337 29-412 22-363 (369)
43 cd06351 PBP1_iGluR_N_LIVBP_lik 100.0 5.3E-37 1.1E-41 306.4 33.1 317 34-421 1-322 (328)
44 cd06345 PBP1_ABC_ligand_bindin 100.0 1.2E-35 2.6E-40 297.9 34.3 321 34-400 1-338 (344)
45 cd06338 PBP1_ABC_ligand_bindin 100.0 1.1E-35 2.5E-40 298.6 34.0 328 34-407 1-344 (345)
46 cd06348 PBP1_ABC_ligand_bindin 100.0 8.7E-35 1.9E-39 291.9 35.3 334 34-405 1-343 (344)
47 cd06346 PBP1_ABC_ligand_bindin 100.0 3.5E-35 7.6E-40 290.1 30.9 303 34-404 1-309 (312)
48 cd06340 PBP1_ABC_ligand_bindin 100.0 4.6E-34 9.9E-39 286.4 32.1 324 34-401 1-342 (347)
49 cd06347 PBP1_ABC_ligand_bindin 100.0 5E-33 1.1E-37 278.4 35.3 320 34-401 1-329 (334)
50 cd06344 PBP1_ABC_ligand_bindin 100.0 3.3E-33 7.3E-38 278.7 31.9 320 34-401 1-327 (332)
51 cd06329 PBP1_SBP_like_3 Peripl 100.0 1.7E-32 3.6E-37 274.7 32.5 314 34-395 1-331 (342)
52 cd06331 PBP1_AmiC_like Type I 100.0 2.1E-32 4.6E-37 273.2 33.0 320 34-399 1-326 (333)
53 cd06355 PBP1_FmdD_like Peripla 100.0 5.5E-32 1.2E-36 271.2 35.2 330 34-409 1-337 (348)
54 KOG1055 GABA-B ion channel rec 100.0 4.8E-34 1E-38 286.2 19.9 372 30-423 39-431 (865)
55 TIGR03669 urea_ABC_arch urea A 100.0 1.6E-31 3.5E-36 268.2 35.5 330 33-410 1-338 (374)
56 cd06336 PBP1_ABC_ligand_bindin 100.0 3.9E-32 8.5E-37 272.4 31.0 323 34-402 1-343 (347)
57 cd06330 PBP1_Arsenic_SBP_like 100.0 4.5E-32 9.7E-37 272.5 31.4 321 34-396 1-334 (346)
58 COG0683 LivK ABC-type branched 100.0 1.1E-31 2.4E-36 269.6 33.9 338 30-411 8-355 (366)
59 cd06343 PBP1_ABC_ligand_bindin 100.0 2.3E-31 5E-36 269.0 36.2 340 30-412 4-361 (362)
60 cd06349 PBP1_ABC_ligand_bindin 100.0 2.1E-31 4.5E-36 266.9 35.4 328 34-411 1-338 (340)
61 cd06327 PBP1_SBP_like_1 Peripl 100.0 2.6E-31 5.6E-36 265.4 31.1 318 34-399 1-328 (334)
62 cd06359 PBP1_Nba_like Type I p 100.0 7.7E-31 1.7E-35 261.8 33.4 324 34-406 1-331 (333)
63 TIGR03407 urea_ABC_UrtA urea A 100.0 1.5E-30 3.2E-35 261.9 35.6 319 33-397 1-326 (359)
64 PF13458 Peripla_BP_6: Peripla 100.0 6.8E-31 1.5E-35 264.0 31.4 332 32-410 1-340 (343)
65 cd06360 PBP1_alkylbenzenes_lik 100.0 2.7E-30 5.9E-35 258.7 34.7 324 34-402 1-331 (336)
66 cd06357 PBP1_AmiC Periplasmic 100.0 8.4E-30 1.8E-34 256.4 36.7 339 34-416 1-346 (360)
67 cd06335 PBP1_ABC_ligand_bindin 100.0 4.7E-30 1E-34 257.4 33.7 322 34-396 1-336 (347)
68 cd06328 PBP1_SBP_like_2 Peripl 100.0 5.5E-30 1.2E-34 255.2 33.3 314 34-395 1-322 (333)
69 cd06358 PBP1_NHase Type I peri 100.0 1E-29 2.2E-34 253.7 32.8 316 34-397 1-324 (333)
70 cd06332 PBP1_aromatic_compound 100.0 3.3E-29 7.1E-34 250.7 33.3 320 34-401 1-327 (333)
71 cd06356 PBP1_Amide_Urea_BP_lik 100.0 7.3E-29 1.6E-33 247.3 33.6 318 34-397 1-325 (334)
72 cd06334 PBP1_ABC_ligand_bindin 100.0 6.3E-29 1.4E-33 248.5 32.0 333 34-395 1-345 (351)
73 cd06269 PBP1_glutamate_recepto 100.0 2E-29 4.4E-34 247.9 28.0 223 34-262 1-234 (298)
74 cd06337 PBP1_ABC_ligand_bindin 100.0 3.9E-28 8.4E-33 244.2 28.9 329 34-410 1-354 (357)
75 PF13433 Peripla_BP_5: Peripla 100.0 1E-27 2.2E-32 228.9 27.8 334 33-423 1-341 (363)
76 cd06326 PBP1_STKc_like Type I 100.0 8.3E-27 1.8E-31 233.5 33.6 317 33-394 1-326 (336)
77 cd06369 PBP1_GC_C_enterotoxin_ 100.0 2E-26 4.4E-31 219.1 30.9 324 46-423 17-366 (380)
78 KOG1052 Glutamate-gated kainat 100.0 4.9E-27 1.1E-31 254.3 28.9 301 214-572 5-319 (656)
79 cd06339 PBP1_YraM_LppC_lipopro 100.0 3.8E-27 8.2E-32 234.7 25.7 302 34-398 1-329 (336)
80 cd04509 PBP1_ABC_transporter_G 100.0 3.3E-26 7.2E-31 225.1 27.6 280 34-329 1-290 (299)
81 TIGR03863 PQQ_ABC_bind ABC tra 99.9 3.4E-25 7.3E-30 219.3 27.0 289 47-399 11-307 (347)
82 cd06341 PBP1_ABC_ligand_bindin 99.9 1.2E-24 2.6E-29 218.2 30.8 309 34-388 1-318 (341)
83 cd06333 PBP1_ABC-type_HAAT_lik 99.9 1.2E-24 2.7E-29 215.2 30.2 279 34-331 1-293 (312)
84 cd06268 PBP1_ABC_transporter_L 99.9 1.1E-23 2.4E-28 206.9 28.9 280 34-331 1-287 (298)
85 PF10613 Lig_chan-Glu_bd: Liga 99.7 7.5E-18 1.6E-22 118.8 2.9 49 489-539 12-65 (65)
86 cd01391 Periplasmic_Binding_Pr 99.6 4.4E-14 9.6E-19 135.9 24.3 215 34-260 1-219 (269)
87 PF04348 LppC: LppC putative l 99.4 7.9E-11 1.7E-15 122.6 21.5 308 31-408 218-533 (536)
88 cd01537 PBP1_Repressors_Sugar_ 98.9 2.4E-07 5.2E-12 88.9 19.9 205 34-256 1-211 (264)
89 cd01536 PBP1_ABC_sugar_binding 98.7 3E-06 6.5E-11 81.5 22.7 205 34-256 1-213 (267)
90 cd06267 PBP1_LacI_sugar_bindin 98.7 2.1E-06 4.6E-11 82.3 19.8 205 34-256 1-210 (264)
91 cd06300 PBP1_ABC_sugar_binding 98.7 3.5E-06 7.5E-11 81.5 21.1 201 34-249 1-210 (272)
92 COG2984 ABC-type uncharacteriz 98.5 0.0001 2.2E-09 69.4 24.4 204 28-247 26-240 (322)
93 cd06320 PBP1_allose_binding Pe 98.5 4.9E-05 1.1E-09 73.5 23.0 199 34-248 1-207 (275)
94 cd06325 PBP1_ABC_uncharacteriz 98.5 1.8E-05 3.9E-10 76.8 20.0 201 34-247 1-208 (281)
95 COG3107 LppC Putative lipoprot 98.4 2.9E-05 6.2E-10 77.1 19.4 253 31-302 256-538 (604)
96 PRK10653 D-ribose transporter 98.4 0.00023 4.9E-09 69.7 24.6 200 31-247 25-231 (295)
97 PRK15007 putative ABC transpor 98.3 7.2E-07 1.6E-11 84.7 6.3 84 469-571 20-107 (243)
98 PRK11917 bifunctional adhesin/ 98.3 7.4E-07 1.6E-11 85.2 6.4 86 469-570 37-127 (259)
99 cd06282 PBP1_GntR_like_2 Ligan 98.3 6.3E-05 1.4E-09 72.3 19.5 202 34-255 1-208 (266)
100 PRK10797 glutamate and asparta 98.3 1.1E-06 2.3E-11 86.0 5.9 82 470-570 40-132 (302)
101 PRK15010 ABC transporter lysin 98.3 1.1E-06 2.4E-11 84.2 5.9 83 469-570 25-111 (260)
102 TIGR03870 ABC_MoxJ methanol ox 98.2 9.2E-07 2E-11 84.0 4.4 76 472-571 2-81 (246)
103 PRK15437 histidine ABC transpo 98.2 1.9E-06 4.1E-11 82.6 5.7 83 469-570 25-111 (259)
104 cd06273 PBP1_GntR_like_1 This 98.2 0.00023 4.9E-09 68.5 19.9 203 34-254 1-209 (268)
105 PF00497 SBP_bac_3: Bacterial 98.1 1E-06 2.2E-11 82.3 2.6 81 472-571 1-85 (225)
106 cd06317 PBP1_ABC_sugar_binding 98.1 0.0005 1.1E-08 66.4 21.4 201 34-248 1-212 (275)
107 cd06323 PBP1_ribose_binding Pe 98.1 0.00068 1.5E-08 65.1 22.2 204 35-257 2-213 (268)
108 PRK09495 glnH glutamine ABC tr 98.1 3.3E-06 7.1E-11 80.3 5.6 82 469-570 24-109 (247)
109 cd06319 PBP1_ABC_sugar_binding 98.1 0.001 2.2E-08 64.4 22.8 200 34-248 1-210 (277)
110 cd06301 PBP1_rhizopine_binding 98.1 0.0014 3.1E-08 63.1 23.5 209 34-257 1-217 (272)
111 TIGR01096 3A0103s03R lysine-ar 98.1 5E-06 1.1E-10 79.3 5.6 83 470-571 24-110 (250)
112 PF13407 Peripla_BP_4: Peripla 98.1 0.001 2.2E-08 63.6 21.3 201 35-249 1-208 (257)
113 cd06310 PBP1_ABC_sugar_binding 98.0 0.0025 5.4E-08 61.4 24.2 208 34-257 1-216 (273)
114 cd06312 PBP1_ABC_sugar_binding 98.0 0.0019 4E-08 62.3 23.2 199 34-248 1-208 (271)
115 cd06305 PBP1_methylthioribose_ 98.0 0.00091 2E-08 64.5 20.7 199 34-248 1-208 (273)
116 PRK10936 TMAO reductase system 98.0 0.0044 9.6E-08 62.0 26.0 208 30-257 44-262 (343)
117 cd01545 PBP1_SalR Ligand-bindi 98.0 0.00092 2E-08 64.3 20.4 207 34-257 1-214 (270)
118 cd06309 PBP1_YtfQ_like Peripla 98.0 0.0024 5.3E-08 61.6 22.5 210 34-257 1-219 (273)
119 PRK10859 membrane-bound lytic 98.0 6.9E-06 1.5E-10 85.8 4.6 83 469-571 42-128 (482)
120 TIGR02995 ectoine_ehuB ectoine 97.9 9.7E-06 2.1E-10 78.4 4.8 84 469-571 32-119 (275)
121 PRK11260 cystine transporter s 97.9 1.4E-05 3.1E-10 76.8 5.8 84 469-571 40-127 (266)
122 PRK09701 D-allose transporter 97.9 0.015 3.2E-07 57.4 27.0 203 34-248 26-241 (311)
123 cd06298 PBP1_CcpA_like Ligand- 97.9 0.002 4.4E-08 61.8 20.3 201 34-252 1-206 (268)
124 cd06284 PBP1_LacI_like_6 Ligan 97.9 0.0022 4.9E-08 61.5 20.1 198 35-251 2-204 (267)
125 cd06321 PBP1_ABC_sugar_binding 97.8 0.0062 1.3E-07 58.6 22.4 206 34-258 1-214 (271)
126 cd06289 PBP1_MalI_like Ligand- 97.8 0.002 4.3E-08 61.9 18.8 202 34-252 1-207 (268)
127 PRK15395 methyl-galactoside AB 97.8 0.013 2.9E-07 58.2 24.8 209 29-247 21-249 (330)
128 PRK10355 xylF D-xylose transpo 97.8 0.016 3.4E-07 57.6 24.6 202 30-248 23-236 (330)
129 cd06275 PBP1_PurR Ligand-bindi 97.7 0.0051 1.1E-07 59.1 20.0 205 35-256 2-211 (269)
130 COG0834 HisJ ABC-type amino ac 97.7 5.1E-05 1.1E-09 73.4 5.9 84 470-568 34-117 (275)
131 cd06322 PBP1_ABC_sugar_binding 97.7 0.024 5.3E-07 54.3 24.5 194 35-247 2-203 (267)
132 cd06288 PBP1_sucrose_transcrip 97.7 0.0037 7.9E-08 60.1 18.7 205 34-257 1-211 (269)
133 cd06303 PBP1_LuxPQ_Quorum_Sens 97.7 0.016 3.4E-07 56.1 23.2 212 34-256 1-222 (280)
134 PRK09959 hybrid sensory histid 97.7 5.2E-05 1.1E-09 89.2 6.7 84 469-569 55-142 (1197)
135 cd01575 PBP1_GntR Ligand-bindi 97.7 0.0068 1.5E-07 58.1 20.1 204 35-256 2-210 (268)
136 COG1879 RbsB ABC-type sugar tr 97.7 0.032 7E-07 55.2 25.1 213 31-256 32-250 (322)
137 cd01539 PBP1_GGBP Periplasmic 97.7 0.019 4.2E-07 56.3 23.3 208 34-250 1-228 (303)
138 cd01540 PBP1_arabinose_binding 97.6 0.016 3.6E-07 56.2 22.5 212 34-256 1-227 (289)
139 cd06311 PBP1_ABC_sugar_binding 97.6 0.03 6.5E-07 53.9 23.9 201 35-248 2-210 (274)
140 TIGR02285 conserved hypothetic 97.6 8.3E-05 1.8E-09 71.6 5.8 80 469-569 17-101 (268)
141 cd06271 PBP1_AglR_RafR_like Li 97.6 0.0084 1.8E-07 57.5 19.8 203 35-256 2-214 (268)
142 cd06293 PBP1_LacI_like_11 Liga 97.6 0.015 3.4E-07 55.7 21.6 205 34-256 1-210 (269)
143 cd01542 PBP1_TreR_like Ligand- 97.6 0.0099 2.2E-07 56.7 20.0 200 35-257 2-207 (259)
144 TIGR01481 ccpA catabolite cont 97.6 0.0093 2E-07 59.3 20.5 201 31-251 58-264 (329)
145 PRK15408 autoinducer 2-binding 97.6 0.048 1E-06 54.2 25.2 199 34-247 25-233 (336)
146 cd06283 PBP1_RegR_EndR_KdgR_li 97.6 0.019 4E-07 55.0 21.6 205 34-256 1-211 (267)
147 cd06270 PBP1_GalS_like Ligand 97.6 0.016 3.6E-07 55.5 20.9 200 34-251 1-205 (268)
148 cd06295 PBP1_CelR Ligand bindi 97.6 0.013 2.8E-07 56.5 20.2 206 33-256 4-219 (275)
149 cd01538 PBP1_ABC_xylose_bindin 97.5 0.029 6.2E-07 54.6 22.5 199 34-249 1-216 (288)
150 cd06274 PBP1_FruR Ligand bindi 97.5 0.023 5E-07 54.3 21.5 206 35-257 2-212 (264)
151 cd06308 PBP1_sensor_kinase_lik 97.5 0.054 1.2E-06 52.0 23.9 208 34-258 1-216 (270)
152 cd06324 PBP1_ABC_sugar_binding 97.5 0.03 6.5E-07 55.0 22.4 205 35-253 2-232 (305)
153 cd06285 PBP1_LacI_like_7 Ligan 97.5 0.019 4E-07 55.0 20.5 197 34-251 1-203 (265)
154 cd06281 PBP1_LacI_like_5 Ligan 97.5 0.0078 1.7E-07 57.8 17.8 201 34-253 1-206 (269)
155 cd01574 PBP1_LacI Ligand-bindi 97.5 0.035 7.5E-07 53.1 22.3 202 34-256 1-207 (264)
156 PF00532 Peripla_BP_1: Peripla 97.5 0.014 3E-07 56.5 19.2 203 34-253 3-211 (279)
157 cd06316 PBP1_ABC_sugar_binding 97.5 0.062 1.3E-06 52.4 24.0 212 34-258 1-219 (294)
158 PRK10014 DNA-binding transcrip 97.5 0.023 5.1E-07 56.7 21.4 203 31-250 63-270 (342)
159 PRK10703 DNA-binding transcrip 97.5 0.018 3.9E-07 57.6 20.4 208 32-256 59-272 (341)
160 cd06306 PBP1_TorT-like TorT-li 97.5 0.045 9.6E-07 52.6 22.4 194 34-247 1-207 (268)
161 cd06299 PBP1_LacI_like_13 Liga 97.4 0.02 4.4E-07 54.7 19.6 205 34-256 1-208 (265)
162 cd06290 PBP1_LacI_like_9 Ligan 97.4 0.026 5.5E-07 54.1 20.2 200 34-251 1-204 (265)
163 cd06278 PBP1_LacI_like_2 Ligan 97.4 0.029 6.3E-07 53.6 20.1 190 35-245 2-196 (266)
164 cd06296 PBP1_CatR_like Ligand- 97.4 0.024 5.2E-07 54.4 19.4 205 35-257 2-213 (270)
165 PRK10423 transcriptional repre 97.4 0.048 1E-06 54.1 21.9 207 31-256 55-268 (327)
166 COG1609 PurR Transcriptional r 97.4 0.048 1E-06 54.2 21.6 201 31-251 57-265 (333)
167 cd06318 PBP1_ABC_sugar_binding 97.3 0.081 1.7E-06 51.1 22.9 200 34-248 1-215 (282)
168 cd06292 PBP1_LacI_like_10 Liga 97.3 0.049 1.1E-06 52.4 21.2 206 35-256 2-214 (273)
169 PRK11303 DNA-binding transcrip 97.3 0.063 1.4E-06 53.3 22.4 203 31-253 60-268 (328)
170 cd01541 PBP1_AraR Ligand-bindi 97.3 0.052 1.1E-06 52.2 20.5 207 35-257 2-217 (273)
171 cd06280 PBP1_LacI_like_4 Ligan 97.3 0.049 1.1E-06 52.1 20.2 200 34-256 1-205 (263)
172 cd06286 PBP1_CcpB_like Ligand- 97.3 0.04 8.7E-07 52.5 19.4 201 34-254 1-206 (260)
173 cd06294 PBP1_ycjW_transcriptio 97.2 0.044 9.6E-07 52.5 19.6 202 34-253 1-213 (270)
174 cd06307 PBP1_uncharacterized_s 97.2 0.15 3.3E-06 49.0 23.4 208 34-256 1-217 (275)
175 cd06272 PBP1_hexuronate_repres 97.2 0.046 9.9E-07 52.2 19.2 200 34-255 1-204 (261)
176 cd06313 PBP1_ABC_sugar_binding 97.2 0.16 3.5E-06 48.8 23.0 178 69-256 29-214 (272)
177 TIGR02417 fruct_sucro_rep D-fr 97.2 0.063 1.4E-06 53.3 20.7 204 31-255 59-269 (327)
178 cd06291 PBP1_Qymf_like Ligand 97.2 0.078 1.7E-06 50.7 20.6 196 34-253 1-203 (265)
179 PRK09959 hybrid sensory histid 97.2 0.00062 1.3E-08 80.3 6.8 84 470-572 302-389 (1197)
180 PRK10727 DNA-binding transcrip 97.1 0.09 2E-06 52.6 20.9 207 31-256 58-270 (343)
181 cd06314 PBP1_tmGBP Periplasmic 97.1 0.28 6.1E-06 47.0 23.7 203 34-256 1-211 (271)
182 cd06277 PBP1_LacI_like_1 Ligan 97.1 0.087 1.9E-06 50.5 19.9 198 34-251 1-205 (268)
183 cd06297 PBP1_LacI_like_12 Liga 97.1 0.084 1.8E-06 50.7 19.6 201 35-257 2-214 (269)
184 TIGR03871 ABC_peri_MoxJ_2 quin 97.0 0.0011 2.3E-08 62.3 5.8 75 472-571 2-80 (232)
185 TIGR02955 TMAO_TorT TMAO reduc 97.0 0.25 5.5E-06 48.1 22.6 196 34-247 1-207 (295)
186 cd06354 PBP1_BmpA_PnrA_like Pe 97.0 0.17 3.8E-06 48.4 20.6 199 34-246 1-206 (265)
187 cd06302 PBP1_LsrB_Quorum_Sensi 96.9 0.36 7.9E-06 47.1 22.8 201 34-248 1-210 (298)
188 PRK10401 DNA-binding transcrip 96.9 0.18 3.8E-06 50.5 21.1 207 31-256 58-270 (346)
189 cd06304 PBP1_BmpA_like Peripla 96.9 0.11 2.4E-06 49.6 18.6 198 34-246 1-202 (260)
190 cd01543 PBP1_XylR Ligand-bindi 96.9 0.1 2.2E-06 50.0 18.4 200 34-257 1-206 (265)
191 cd06279 PBP1_LacI_like_3 Ligan 96.9 0.17 3.7E-06 49.0 19.9 152 91-251 50-223 (283)
192 PF04392 ABC_sub_bind: ABC tra 96.9 0.1 2.3E-06 50.8 18.2 185 34-232 1-194 (294)
193 PRK09526 lacI lac repressor; R 96.8 0.39 8.5E-06 47.9 22.8 205 31-256 62-273 (342)
194 PRK14987 gluconate operon tran 96.8 0.24 5.2E-06 49.2 21.1 206 32-256 63-272 (331)
195 PRK11041 DNA-binding transcrip 96.7 0.24 5.1E-06 48.6 20.2 209 31-257 34-247 (309)
196 PRK09492 treR trehalose repres 96.7 0.4 8.6E-06 47.2 21.5 191 31-247 61-256 (315)
197 smart00062 PBPb Bacterial peri 96.6 0.0025 5.4E-08 58.4 4.9 79 472-569 2-84 (219)
198 cd00134 PBPb Bacterial peripla 96.6 0.0035 7.5E-08 57.5 5.4 72 473-563 2-73 (218)
199 cd01544 PBP1_GalR Ligand-bindi 96.4 0.39 8.5E-06 46.0 19.1 198 34-256 1-212 (270)
200 TIGR02634 xylF D-xylose ABC tr 96.1 1.4 3E-05 43.1 21.0 171 69-248 28-209 (302)
201 TIGR02405 trehalos_R_Ecol treh 95.9 1.5 3.3E-05 43.0 20.6 191 31-247 58-253 (311)
202 cd06353 PBP1_BmpA_Med_like Per 95.5 1.3 2.9E-05 42.1 17.4 196 34-246 1-200 (258)
203 TIGR02637 RhaS rhamnose ABC tr 95.0 3.8 8.3E-05 39.9 23.5 162 79-248 38-210 (302)
204 cd06315 PBP1_ABC_sugar_binding 94.0 6 0.00013 38.0 23.2 204 34-250 2-216 (280)
205 TIGR02990 ectoine_eutA ectoine 93.9 0.72 1.6E-05 43.0 10.9 91 153-246 108-206 (239)
206 COG1744 Med Uncharacterized AB 93.3 9.3 0.0002 38.0 21.3 160 82-247 82-244 (345)
207 cd06287 PBP1_LacI_like_8 Ligan 92.6 9.8 0.00021 36.3 19.2 156 93-256 52-211 (269)
208 PRK10339 DNA-binding transcrip 92.1 13 0.00028 36.6 18.8 149 96-255 113-266 (327)
209 COG1454 EutG Alcohol dehydroge 90.6 3.3 7.1E-05 41.4 11.4 92 153-244 17-110 (377)
210 cd06276 PBP1_FucR_like Ligand- 89.7 18 0.00039 34.0 17.7 145 91-254 46-193 (247)
211 cd06353 PBP1_BmpA_Med_like Per 89.0 2.2 4.8E-05 40.6 8.6 86 34-128 122-207 (258)
212 PRK09860 putative alcohol dehy 88.6 4.4 9.5E-05 41.1 11.0 87 154-240 20-108 (383)
213 PF13377 Peripla_BP_3: Peripla 88.4 2.1 4.6E-05 37.0 7.6 98 157-256 1-101 (160)
214 COG3473 Maleate cis-trans isom 88.2 19 0.00041 32.3 13.0 88 154-244 107-201 (238)
215 PF03808 Glyco_tran_WecB: Glyc 87.6 13 0.00027 32.9 11.9 99 151-259 35-135 (172)
216 PRK15454 ethanol dehydrogenase 87.3 3.2 7E-05 42.2 9.0 79 154-232 38-116 (395)
217 cd08190 HOT Hydroxyacid-oxoaci 86.8 3.5 7.7E-05 42.3 9.1 86 154-239 12-99 (414)
218 TIGR00035 asp_race aspartate r 86.3 7.3 0.00016 36.3 10.2 85 83-196 60-145 (229)
219 cd08192 Fe-ADH7 Iron-containin 86.3 4 8.7E-05 41.2 9.1 88 154-241 13-102 (370)
220 COG4213 XylF ABC-type xylose t 86.0 33 0.00073 32.9 19.7 91 27-127 20-112 (341)
221 PRK10624 L-1,2-propanediol oxi 85.7 4.5 9.8E-05 41.0 9.2 86 154-239 19-106 (382)
222 cd08193 HVD 5-hydroxyvalerate 85.2 4.8 0.0001 40.8 9.1 87 154-240 15-103 (376)
223 KOG3857 Alcohol dehydrogenase, 85.1 7.7 0.00017 37.5 9.4 94 138-231 39-136 (465)
224 cd08189 Fe-ADH5 Iron-containin 84.9 16 0.00034 37.0 12.6 88 154-241 15-104 (374)
225 TIGR01098 3A0109s03R phosphate 84.4 0.78 1.7E-05 43.5 2.8 58 470-545 32-89 (254)
226 cd08551 Fe-ADH iron-containing 84.4 6.1 0.00013 39.9 9.4 87 154-240 12-100 (370)
227 cd08194 Fe-ADH6 Iron-containin 83.7 6.5 0.00014 39.8 9.2 86 154-239 12-99 (375)
228 PF02608 Bmp: Basic membrane p 83.2 48 0.001 32.4 17.9 200 33-247 2-212 (306)
229 COG0078 ArgF Ornithine carbamo 83.0 45 0.00099 32.0 15.6 162 32-228 44-212 (310)
230 TIGR02638 lactal_redase lactal 82.6 6.9 0.00015 39.6 9.0 86 153-238 17-104 (379)
231 PF00465 Fe-ADH: Iron-containi 80.8 4.9 0.00011 40.5 7.1 89 154-244 12-102 (366)
232 PF13685 Fe-ADH_2: Iron-contai 80.2 9.5 0.00021 35.9 8.2 98 155-257 9-107 (250)
233 cd08188 Fe-ADH4 Iron-containin 80.1 10 0.00023 38.3 9.2 85 154-238 17-103 (377)
234 cd08185 Fe-ADH1 Iron-containin 79.9 10 0.00022 38.4 9.1 86 154-240 15-103 (380)
235 PRK10200 putative racemase; Pr 79.2 20 0.00042 33.4 10.0 86 82-196 59-146 (230)
236 cd08181 PPD-like 1,3-propanedi 78.7 20 0.00043 36.0 10.6 77 154-231 15-92 (357)
237 COG4623 Predicted soluble lyti 78.6 3.1 6.6E-05 40.7 4.4 74 470-563 23-96 (473)
238 cd08176 LPO Lactadehyde:propan 77.7 11 0.00024 38.1 8.6 86 154-239 17-104 (377)
239 cd08191 HHD 6-hydroxyhexanoate 76.4 17 0.00036 37.0 9.4 86 154-240 12-99 (386)
240 PRK11063 metQ DL-methionine tr 76.0 11 0.00023 36.2 7.5 81 1-102 5-85 (271)
241 cd08182 HEPD Hydroxyethylphosp 74.9 17 0.00037 36.6 9.1 85 154-241 12-98 (367)
242 cd08170 GlyDH Glycerol dehydro 74.4 13 0.00028 37.3 7.9 75 154-231 12-86 (351)
243 PF02608 Bmp: Basic membrane p 73.7 20 0.00042 35.1 8.9 88 34-128 128-220 (306)
244 PRK00945 acetyl-CoA decarbonyl 72.6 29 0.00062 30.5 8.5 46 91-136 28-78 (171)
245 cd07766 DHQ_Fe-ADH Dehydroquin 72.6 21 0.00045 35.4 8.9 86 154-241 12-99 (332)
246 cd08187 BDH Butanol dehydrogen 72.3 31 0.00067 35.0 10.2 88 140-231 7-95 (382)
247 COG1464 NlpA ABC-type metal io 71.8 22 0.00048 33.4 8.0 27 276-302 222-248 (268)
248 cd08186 Fe-ADH8 Iron-containin 71.1 22 0.00047 36.1 8.8 87 154-240 12-104 (383)
249 PF06506 PrpR_N: Propionate ca 70.8 63 0.0014 28.5 10.7 127 82-248 18-145 (176)
250 PF07302 AroM: AroM protein; 70.6 46 0.00099 30.5 9.6 85 152-243 115-201 (221)
251 PRK07475 hypothetical protein; 70.4 19 0.00042 33.8 7.6 82 82-195 62-146 (245)
252 cd08171 GlyDH-like2 Glycerol d 70.1 21 0.00046 35.6 8.3 84 154-239 12-97 (345)
253 TIGR00315 cdhB CO dehydrogenas 69.2 41 0.00089 29.2 8.7 34 96-129 28-63 (162)
254 PRK15116 sulfur acceptor prote 68.6 1.1E+02 0.0024 29.2 12.8 115 45-175 81-208 (268)
255 COG1744 Med Uncharacterized AB 68.0 88 0.0019 31.2 12.0 75 32-112 161-235 (345)
256 PF13407 Peripla_BP_4: Peripla 67.8 13 0.00029 34.9 6.2 78 168-247 1-81 (257)
257 cd08183 Fe-ADH2 Iron-containin 67.6 30 0.00065 35.0 8.9 82 154-240 12-95 (374)
258 PRK09423 gldA glycerol dehydro 67.4 25 0.00054 35.5 8.2 75 154-231 19-93 (366)
259 TIGR00854 pts-sorbose PTS syst 66.4 49 0.0011 28.4 8.6 81 152-240 13-93 (151)
260 PRK00489 hisG ATP phosphoribos 66.2 2.8 6E-05 40.6 1.1 32 529-567 52-83 (287)
261 PF13380 CoA_binding_2: CoA bi 65.6 11 0.00024 30.7 4.4 86 166-258 1-88 (116)
262 PRK09756 PTS system N-acetylga 65.4 56 0.0012 28.3 8.8 81 152-241 17-98 (158)
263 cd06305 PBP1_methylthioribose_ 65.3 33 0.00072 32.4 8.5 77 168-247 2-81 (273)
264 PF12683 DUF3798: Protein of u 65.3 1.3E+02 0.0027 28.6 21.2 205 32-246 2-223 (275)
265 cd00001 PTS_IIB_man PTS_IIB, P 65.0 53 0.0012 28.2 8.6 82 152-241 12-93 (151)
266 COG1880 CdhB CO dehydrogenase/ 64.4 91 0.002 26.6 9.6 120 90-218 28-167 (170)
267 PRK11425 PTS system N-acetylga 63.4 63 0.0014 28.0 8.7 80 152-240 15-94 (157)
268 cd06533 Glyco_transf_WecG_TagA 63.1 1.1E+02 0.0023 27.0 11.2 98 151-258 33-132 (171)
269 COG1179 Dinucleotide-utilizing 62.6 54 0.0012 30.4 8.4 86 45-146 81-167 (263)
270 cd06301 PBP1_rhizopine_binding 62.2 33 0.00071 32.5 7.8 78 167-247 1-82 (272)
271 TIGR03850 bind_CPR_0540 carboh 62.1 29 0.00064 35.8 7.9 24 51-77 48-71 (437)
272 PRK15424 propionate catabolism 61.2 2E+02 0.0043 30.7 13.7 128 82-249 48-176 (538)
273 cd08178 AAD_C C-terminal alcoh 61.2 71 0.0015 32.6 10.3 78 163-240 19-98 (398)
274 cd08550 GlyDH-like Glycerol_de 61.2 39 0.00084 33.8 8.2 75 154-231 12-86 (349)
275 PRK10081 entericidin B membran 60.2 7.9 0.00017 25.5 2.0 20 1-20 2-21 (48)
276 cd00755 YgdL_like Family of ac 60.0 1.5E+02 0.0032 27.6 12.5 115 45-175 62-182 (231)
277 PRK00856 pyrB aspartate carbam 59.7 1.8E+02 0.0039 28.4 12.2 135 33-198 46-187 (305)
278 TIGR02329 propionate_PrpR prop 59.4 2.1E+02 0.0047 30.4 13.6 129 81-249 37-166 (526)
279 COG0563 Adk Adenylate kinase a 59.3 24 0.00052 31.3 5.6 29 99-127 3-31 (178)
280 TIGR01098 3A0109s03R phosphate 58.9 27 0.00058 32.8 6.5 40 1-42 1-43 (254)
281 TIGR02122 TRAP_TAXI TRAP trans 58.1 40 0.00087 32.9 7.8 40 1-42 1-41 (320)
282 cd08175 G1PDH Glycerol-1-phosp 58.1 48 0.001 33.1 8.3 84 154-239 12-99 (348)
283 cd06267 PBP1_LacI_sugar_bindin 57.8 42 0.0009 31.3 7.6 76 168-247 2-79 (264)
284 cd01537 PBP1_Repressors_Sugar_ 57.5 39 0.00085 31.5 7.4 77 168-247 2-80 (264)
285 cd01538 PBP1_ABC_xylose_bindin 56.9 63 0.0014 31.0 8.8 77 168-247 2-81 (288)
286 PRK03515 ornithine carbamoyltr 56.8 2.1E+02 0.0046 28.4 15.6 131 34-199 47-187 (336)
287 cd01994 Alpha_ANH_like_IV This 56.6 1.5E+02 0.0033 26.7 12.1 102 109-232 46-147 (194)
288 cd02071 MM_CoA_mut_B12_BD meth 56.2 1.1E+02 0.0024 25.0 9.7 73 169-247 3-79 (122)
289 PF00625 Guanylate_kin: Guanyl 56.0 1.5E+02 0.0031 26.3 10.5 92 97-197 3-98 (183)
290 PF00205 TPP_enzyme_M: Thiamin 55.9 12 0.00025 31.5 3.0 58 88-146 2-63 (137)
291 PF03830 PTSIIB_sorb: PTS syst 55.8 26 0.00057 30.0 5.2 84 152-243 13-96 (151)
292 PF04273 DUF442: Putative phos 55.5 1.1E+02 0.0023 24.6 9.4 83 160-242 23-106 (110)
293 cd06289 PBP1_MalI_like Ligand- 55.4 54 0.0012 30.8 8.0 77 168-247 2-80 (268)
294 cd06303 PBP1_LuxPQ_Quorum_Sens 54.4 46 0.00099 31.8 7.3 79 168-246 2-84 (280)
295 cd06354 PBP1_BmpA_PnrA_like Pe 54.3 1.9E+02 0.0042 27.2 13.5 116 33-154 122-237 (265)
296 PRK03692 putative UDP-N-acetyl 54.1 1E+02 0.0022 28.9 9.2 87 151-244 92-179 (243)
297 PRK15408 autoinducer 2-binding 54.0 75 0.0016 31.5 8.8 82 164-247 22-106 (336)
298 cd06312 PBP1_ABC_sugar_binding 53.9 61 0.0013 30.7 8.1 79 167-247 1-83 (271)
299 cd01536 PBP1_ABC_sugar_binding 53.6 62 0.0013 30.2 8.1 77 167-246 1-80 (267)
300 cd06304 PBP1_BmpA_like Peripla 53.2 2E+02 0.0043 27.0 12.8 131 33-172 121-251 (260)
301 TIGR02370 pyl_corrinoid methyl 53.0 1.6E+02 0.0034 26.6 10.0 86 166-257 85-174 (197)
302 cd06306 PBP1_TorT-like TorT-li 53.0 59 0.0013 30.8 7.8 80 167-247 1-82 (268)
303 TIGR00067 glut_race glutamate 52.1 2E+02 0.0043 27.2 10.9 37 91-127 54-91 (251)
304 cd06277 PBP1_LacI_like_1 Ligan 51.9 92 0.002 29.3 9.0 75 168-247 2-81 (268)
305 TIGR02136 ptsS_2 phosphate bin 51.8 36 0.00079 32.9 6.1 64 1-76 1-70 (287)
306 PRK14804 ornithine carbamoyltr 51.6 2.4E+02 0.0053 27.6 13.2 131 34-199 45-183 (311)
307 PRK14805 ornithine carbamoyltr 51.6 2.4E+02 0.0052 27.5 15.2 130 34-199 40-177 (302)
308 cd06282 PBP1_GntR_like_2 Ligan 51.5 71 0.0015 29.9 8.1 77 168-247 2-80 (266)
309 cd06322 PBP1_ABC_sugar_binding 51.5 70 0.0015 30.1 8.1 77 168-247 2-81 (267)
310 cd06318 PBP1_ABC_sugar_binding 51.4 63 0.0014 30.7 7.8 77 168-247 2-81 (282)
311 cd08177 MAR Maleylacetate redu 51.3 45 0.00098 33.1 6.8 84 154-240 12-97 (337)
312 cd08549 G1PDH_related Glycerol 51.2 1.1E+02 0.0025 30.2 9.6 84 154-239 12-99 (332)
313 cd06299 PBP1_LacI_like_13 Liga 50.1 88 0.0019 29.3 8.5 76 168-247 2-79 (265)
314 cd08173 Gro1PDH Sn-glycerol-1- 49.3 1.3E+02 0.0028 29.9 9.7 81 155-239 14-97 (339)
315 PRK00002 aroB 3-dehydroquinate 49.0 2.2E+02 0.0047 28.6 11.3 97 140-240 9-112 (358)
316 PRK15395 methyl-galactoside AB 49.0 2.7E+02 0.0058 27.4 12.0 124 30-162 160-293 (330)
317 cd03364 TOPRIM_DnaG_primases T 48.7 39 0.00084 25.1 4.6 41 156-197 35-75 (79)
318 PRK13805 bifunctional acetalde 48.3 1.7E+02 0.0037 33.4 11.5 76 164-239 479-558 (862)
319 PRK10386 curli assembly protei 48.2 69 0.0015 26.5 6.0 51 1-58 1-53 (130)
320 cd01391 Periplasmic_Binding_Pr 48.1 80 0.0017 29.1 7.9 78 167-247 1-83 (269)
321 PF08194 DIM: DIM protein; In 48.1 30 0.00065 21.3 2.9 9 29-37 22-30 (36)
322 cd08180 PDD 1,3-propanediol de 47.9 50 0.0011 32.7 6.5 78 161-239 18-97 (332)
323 PF04392 ABC_sub_bind: ABC tra 47.8 1.6E+02 0.0034 28.5 9.9 113 33-162 132-247 (294)
324 cd02067 B12-binding B12 bindin 47.5 1.5E+02 0.0032 23.9 8.3 68 173-246 7-78 (119)
325 cd01540 PBP1_arabinose_binding 47.4 76 0.0016 30.3 7.7 76 168-247 2-80 (289)
326 PRK00865 glutamate racemase; P 47.3 2.6E+02 0.0056 26.6 11.1 35 92-126 62-96 (261)
327 PF01177 Asp_Glu_race: Asp/Glu 47.1 2.2E+02 0.0048 25.8 12.7 123 92-244 60-198 (216)
328 PF02602 HEM4: Uroporphyrinoge 47.0 42 0.00091 31.0 5.6 106 146-258 97-203 (231)
329 cd06281 PBP1_LacI_like_5 Ligan 46.2 1E+02 0.0023 29.0 8.4 76 168-246 2-79 (269)
330 cd06310 PBP1_ABC_sugar_binding 45.5 91 0.002 29.4 7.8 80 167-247 1-83 (273)
331 PRK13010 purU formyltetrahydro 44.8 3E+02 0.0065 26.6 14.1 92 97-194 10-119 (289)
332 cd00338 Ser_Recombinase Serine 44.6 1.8E+02 0.0039 24.0 10.6 25 148-172 15-39 (137)
333 cd01539 PBP1_GGBP Periplasmic 44.3 1.1E+02 0.0024 29.6 8.4 78 167-247 1-83 (303)
334 cd08184 Fe-ADH3 Iron-containin 44.1 1.3E+02 0.0029 29.9 8.8 82 154-239 12-100 (347)
335 cd06302 PBP1_LsrB_Quorum_Sensi 44.1 1.1E+02 0.0024 29.5 8.3 78 168-247 2-82 (298)
336 cd08179 NADPH_BDH NADPH-depend 44.0 57 0.0012 33.0 6.3 77 163-239 21-100 (375)
337 TIGR03431 PhnD phosphonate ABC 43.4 61 0.0013 31.2 6.3 38 1-42 1-38 (288)
338 PRK11303 DNA-binding transcrip 43.3 1.5E+02 0.0032 29.0 9.2 80 165-247 61-142 (328)
339 COG3221 PhnD ABC-type phosphat 43.1 54 0.0012 31.8 5.7 62 30-105 34-97 (299)
340 TIGR00646 MG010 DNA primase-re 43.1 57 0.0012 29.8 5.4 57 158-217 147-203 (218)
341 COG2984 ABC-type uncharacteriz 42.9 2.1E+02 0.0046 27.9 9.4 83 33-127 160-245 (322)
342 cd06300 PBP1_ABC_sugar_binding 42.8 1.2E+02 0.0027 28.4 8.3 80 167-247 1-86 (272)
343 PRK10481 hypothetical protein; 42.5 1.7E+02 0.0038 27.0 8.5 75 157-235 120-195 (224)
344 PRK09189 uroporphyrinogen-III 42.1 1.7E+02 0.0037 27.2 8.9 87 152-244 103-191 (240)
345 PRK10355 xylF D-xylose transpo 42.0 1.5E+02 0.0033 29.2 8.9 78 166-246 26-106 (330)
346 cd01545 PBP1_SalR Ligand-bindi 41.9 1.2E+02 0.0027 28.3 8.2 77 168-246 2-80 (270)
347 TIGR00696 wecB_tagA_cpsF bacte 41.9 2.5E+02 0.0054 24.9 11.7 84 151-242 35-120 (177)
348 PRK00843 egsA NAD(P)-dependent 41.6 1.9E+02 0.0042 28.8 9.6 93 140-239 11-106 (350)
349 PRK15088 PTS system mannose-sp 41.5 1.7E+02 0.0037 28.8 8.9 81 152-240 176-256 (322)
350 cd08197 DOIS 2-deoxy-scyllo-in 41.3 2.8E+02 0.006 27.8 10.6 100 154-257 12-118 (355)
351 PRK10936 TMAO reductase system 41.2 1.4E+02 0.0031 29.5 8.7 80 166-247 47-129 (343)
352 PRK10653 D-ribose transporter 41.1 1.4E+02 0.003 28.7 8.5 80 165-247 26-108 (295)
353 cd06295 PBP1_CelR Ligand bindi 40.5 1.6E+02 0.0035 27.7 8.8 78 164-247 2-88 (275)
354 cd03770 SR_TndX_transposase Se 40.3 2.2E+02 0.0048 23.8 10.3 20 150-169 21-40 (140)
355 cd06270 PBP1_GalS_like Ligand 40.1 1.6E+02 0.0035 27.6 8.6 76 168-247 2-79 (268)
356 PRK10014 DNA-binding transcrip 40.1 1.7E+02 0.0038 28.7 9.2 79 166-247 65-145 (342)
357 TIGR01744 XPRTase xanthine pho 39.8 82 0.0018 28.3 6.0 70 57-127 5-79 (191)
358 cd06315 PBP1_ABC_sugar_binding 39.5 1.9E+02 0.0041 27.5 9.0 79 166-247 1-82 (280)
359 COG1794 RacX Aspartate racemas 39.4 3.1E+02 0.0067 25.3 15.5 127 82-246 59-188 (230)
360 PRK12562 ornithine carbamoyltr 38.8 4E+02 0.0087 26.4 15.9 131 34-199 47-187 (334)
361 COG5567 Predicted small peripl 38.8 33 0.00071 23.3 2.3 18 1-18 1-18 (58)
362 PF13155 Toprim_2: Toprim-like 38.8 49 0.0011 25.5 4.0 41 153-193 35-75 (96)
363 cd06320 PBP1_allose_binding Pe 38.7 1.5E+02 0.0032 28.0 8.1 79 168-247 2-83 (275)
364 PF00731 AIRC: AIR carboxylase 38.6 2E+02 0.0044 24.6 7.7 68 167-236 2-69 (150)
365 cd06317 PBP1_ABC_sugar_binding 38.5 1.4E+02 0.003 28.0 8.0 77 168-247 2-82 (275)
366 TIGR02667 moaB_proteo molybden 38.3 2.4E+02 0.0052 24.5 8.5 79 164-244 3-90 (163)
367 COG1609 PurR Transcriptional r 38.1 4.1E+02 0.0088 26.3 12.1 119 34-160 177-303 (333)
368 PF13362 Toprim_3: Toprim doma 37.9 1.2E+02 0.0025 23.5 5.9 51 164-217 40-92 (96)
369 cd06296 PBP1_CatR_like Ligand- 37.9 1.6E+02 0.0034 27.6 8.2 75 168-246 2-78 (270)
370 cd06313 PBP1_ABC_sugar_binding 37.8 1.3E+02 0.0028 28.5 7.5 69 176-247 12-81 (272)
371 cd01542 PBP1_TreR_like Ligand- 37.7 1.6E+02 0.0035 27.3 8.2 75 168-246 2-78 (259)
372 cd06319 PBP1_ABC_sugar_binding 37.5 1.4E+02 0.003 28.1 7.8 77 168-247 2-81 (277)
373 cd06323 PBP1_ribose_binding Pe 37.5 1.4E+02 0.003 27.9 7.7 77 168-247 2-81 (268)
374 cd06316 PBP1_ABC_sugar_binding 37.4 1.3E+02 0.0028 28.8 7.6 79 167-247 1-82 (294)
375 PRK09701 D-allose transporter 36.9 2.1E+02 0.0045 27.9 9.0 84 163-247 22-108 (311)
376 cd06278 PBP1_LacI_like_2 Ligan 36.9 1.6E+02 0.0036 27.4 8.1 75 168-247 2-78 (266)
377 cd06285 PBP1_LacI_like_7 Ligan 36.8 1.9E+02 0.0041 27.0 8.6 75 168-246 2-78 (265)
378 TIGR03431 PhnD phosphonate ABC 36.7 52 0.0011 31.7 4.6 36 502-545 49-84 (288)
379 cd06324 PBP1_ABC_sugar_binding 36.5 1.4E+02 0.003 29.0 7.6 69 176-247 13-83 (305)
380 cd06321 PBP1_ABC_sugar_binding 36.4 1.5E+02 0.0032 27.9 7.7 77 168-247 2-83 (271)
381 PF09651 Cas_APE2256: CRISPR-a 36.2 1.5E+02 0.0032 24.9 6.6 47 153-199 7-56 (136)
382 PRK05928 hemD uroporphyrinogen 36.1 1.8E+02 0.004 26.9 8.2 77 164-246 124-200 (249)
383 COG1105 FruK Fructose-1-phosph 35.8 99 0.0022 30.1 6.1 40 196-236 133-172 (310)
384 PRK00278 trpC indole-3-glycero 35.7 3.5E+02 0.0075 25.7 9.8 87 154-248 73-162 (260)
385 TIGR02417 fruct_sucro_rep D-fr 35.3 2.7E+02 0.0058 27.1 9.6 79 165-246 60-140 (327)
386 cd06274 PBP1_FruR Ligand bindi 35.2 2E+02 0.0043 26.9 8.3 76 168-247 2-79 (264)
387 PRK08286 cbiC cobalt-precorrin 35.2 70 0.0015 29.2 4.7 48 81-128 139-190 (214)
388 cd06325 PBP1_ABC_uncharacteriz 35.1 3.8E+02 0.0083 25.1 12.4 115 31-162 130-247 (281)
389 PRK11070 ssDNA exonuclease Rec 35.1 3.7E+02 0.008 29.0 10.8 99 154-259 57-159 (575)
390 TIGR03316 ygeW probable carbam 34.9 4.8E+02 0.01 26.2 16.7 138 34-199 44-207 (357)
391 PF00448 SRP54: SRP54-type pro 34.9 2.9E+02 0.0063 24.9 8.8 64 165-232 29-93 (196)
392 COG1707 ACT domain-containing 34.8 2E+02 0.0044 24.8 6.9 61 68-128 112-175 (218)
393 TIGR03884 sel_bind_Methan sele 34.7 83 0.0018 23.0 4.0 43 67-109 9-54 (74)
394 PRK13808 adenylate kinase; Pro 34.7 1.7E+02 0.0038 28.9 7.7 29 99-127 3-31 (333)
395 cd06292 PBP1_LacI_like_10 Liga 34.6 2.3E+02 0.005 26.5 8.8 77 168-247 2-84 (273)
396 COG0134 TrpC Indole-3-glycerol 34.4 1.5E+02 0.0033 27.9 6.8 87 154-248 69-158 (254)
397 PRK04168 molybdate ABC transpo 34.3 1.4E+02 0.003 29.6 7.2 20 212-231 212-231 (334)
398 PRK01713 ornithine carbamoyltr 34.2 4.8E+02 0.01 25.9 15.7 130 34-198 48-186 (334)
399 PRK15396 murein lipoprotein; P 34.1 39 0.00084 25.2 2.4 23 1-24 1-23 (78)
400 COG2082 CobH Precorrin isomera 34.1 73 0.0016 28.9 4.6 49 81-129 135-187 (210)
401 KOG0025 Zn2+-binding dehydroge 34.1 2.6E+02 0.0056 27.0 8.2 94 140-246 162-257 (354)
402 cd06271 PBP1_AglR_RafR_like Li 33.7 1.8E+02 0.0038 27.2 7.8 53 175-230 15-67 (268)
403 cd06273 PBP1_GntR_like_1 This 33.5 2.1E+02 0.0047 26.6 8.3 75 168-246 2-78 (268)
404 COG1587 HemD Uroporphyrinogen- 32.9 3.5E+02 0.0076 25.3 9.4 90 152-247 108-199 (248)
405 TIGR00249 sixA phosphohistidin 32.8 2.5E+02 0.0053 24.0 7.6 96 145-243 23-120 (152)
406 PRK02255 putrescine carbamoylt 32.3 5.2E+02 0.011 25.7 16.0 131 33-199 43-184 (338)
407 PF01902 ATP_bind_4: ATP-bindi 32.1 3.2E+02 0.007 25.1 8.6 95 113-232 50-144 (218)
408 PF00218 IGPS: Indole-3-glycer 32.1 4.4E+02 0.0096 24.9 9.7 87 154-248 71-160 (254)
409 PRK14529 adenylate kinase; Pro 31.7 2.1E+02 0.0046 26.4 7.4 29 99-127 3-31 (223)
410 PF13207 AAA_17: AAA domain; P 31.6 39 0.00084 27.3 2.4 32 98-129 1-32 (121)
411 PRK08105 flavodoxin; Provision 31.4 2.2E+02 0.0048 24.3 7.1 81 166-257 2-92 (149)
412 PRK00779 ornithine carbamoyltr 31.3 5.1E+02 0.011 25.3 12.8 131 33-199 44-182 (304)
413 PLN02342 ornithine carbamoyltr 31.2 5.4E+02 0.012 25.7 12.3 129 34-198 87-223 (348)
414 cd06307 PBP1_uncharacterized_s 31.1 1.8E+02 0.004 27.3 7.4 80 167-247 1-84 (275)
415 PF11735 CAP59_mtransfer: Cryp 31.0 3E+02 0.0064 25.8 8.2 46 152-197 19-67 (241)
416 cd06286 PBP1_CcpB_like Ligand- 30.7 2.3E+02 0.005 26.3 8.0 60 168-230 2-63 (260)
417 cd01575 PBP1_GntR Ligand-bindi 30.7 2.2E+02 0.0048 26.5 7.9 75 168-246 2-78 (268)
418 PF02698 DUF218: DUF218 domain 30.5 2.6E+02 0.0057 23.7 7.6 77 87-176 26-109 (155)
419 PF13671 AAA_33: AAA domain; P 30.4 61 0.0013 27.0 3.5 30 98-127 1-30 (143)
420 PF03162 Y_phosphatase2: Tyros 30.3 3.4E+02 0.0073 23.6 8.1 82 140-230 12-98 (164)
421 COG1419 FlhF Flagellar GTP-bin 30.3 3.3E+02 0.0071 27.7 8.8 83 141-232 205-291 (407)
422 TIGR02634 xylF D-xylose ABC tr 30.3 2.2E+02 0.0047 27.5 7.9 70 175-247 10-80 (302)
423 COG4126 Hydantoin racemase [Am 30.2 1.8E+02 0.0038 26.6 6.3 28 215-242 167-195 (230)
424 PRK13957 indole-3-glycerol-pho 30.0 4.7E+02 0.01 24.6 10.1 87 154-248 64-153 (247)
425 cd01569 PBEF_like pre-B-cell c 30.0 4.9E+02 0.011 26.6 10.1 142 103-254 197-359 (407)
426 TIGR01359 UMP_CMP_kin_fam UMP- 30.0 54 0.0012 28.9 3.3 30 98-127 1-30 (183)
427 PRK14987 gluconate operon tran 29.8 3.3E+02 0.0072 26.5 9.2 78 166-247 64-143 (331)
428 PRK05954 precorrin-8X methylmu 29.8 96 0.0021 28.0 4.6 68 48-128 108-179 (203)
429 PRK02710 plastocyanin; Provisi 29.8 58 0.0013 26.6 3.1 10 27-36 27-36 (119)
430 cd00886 MogA_MoaB MogA_MoaB fa 29.7 3.5E+02 0.0075 23.1 8.1 63 167-231 2-70 (152)
431 cd00758 MoCF_BD MoCF_BD: molyb 29.7 3E+02 0.0064 22.8 7.5 47 181-230 20-66 (133)
432 PF08357 SEFIR: SEFIR domain; 29.6 1.3E+02 0.0027 25.6 5.4 75 166-242 1-78 (150)
433 TIGR02637 RhaS rhamnose ABC tr 29.6 2.4E+02 0.0052 27.1 8.0 71 175-247 10-82 (302)
434 cd06298 PBP1_CcpA_like Ligand- 29.5 2.4E+02 0.0052 26.3 7.9 75 168-246 2-78 (268)
435 COG3221 PhnD ABC-type phosphat 29.1 71 0.0015 31.0 4.0 36 502-545 57-92 (299)
436 PRK00286 xseA exodeoxyribonucl 29.1 5E+02 0.011 26.9 10.6 86 32-127 135-230 (438)
437 PRK05723 flavodoxin; Provision 29.0 3.7E+02 0.008 23.0 8.6 67 167-244 2-76 (151)
438 cd06308 PBP1_sensor_kinase_lik 29.0 2.5E+02 0.0053 26.4 7.9 77 168-247 2-82 (270)
439 cd06309 PBP1_YtfQ_like Peripla 28.9 1.6E+02 0.0034 27.8 6.5 70 175-247 11-81 (273)
440 cd06283 PBP1_RegR_EndR_KdgR_li 28.8 2.9E+02 0.0064 25.6 8.4 75 168-246 2-78 (267)
441 PRK11914 diacylglycerol kinase 28.7 4E+02 0.0087 25.9 9.4 77 162-243 5-85 (306)
442 TIGR00670 asp_carb_tr aspartat 28.7 5.6E+02 0.012 25.0 14.0 133 34-199 41-182 (301)
443 PRK14723 flhF flagellar biosyn 28.6 6.9E+02 0.015 28.0 11.7 18 496-513 587-604 (767)
444 cd08169 DHQ-like Dehydroquinat 28.6 6E+02 0.013 25.3 11.3 87 154-241 12-104 (344)
445 PRK05575 cbiC precorrin-8X met 28.6 1E+02 0.0023 27.8 4.6 48 81-128 133-184 (204)
446 PF02601 Exonuc_VII_L: Exonucl 28.6 5.6E+02 0.012 25.1 10.4 86 32-127 14-113 (319)
447 PF02310 B12-binding: B12 bind 28.5 3.1E+02 0.0067 21.9 10.2 49 176-230 11-59 (121)
448 PF00532 Peripla_BP_1: Peripla 28.5 1.7E+02 0.0037 28.0 6.6 65 166-234 2-68 (279)
449 PF13607 Succ_CoA_lig: Succiny 28.4 2.7E+02 0.0058 23.4 6.9 77 167-248 3-81 (138)
450 PRK15138 aldehyde reductase; P 28.4 2.4E+02 0.0052 28.7 7.9 82 154-239 20-104 (387)
451 PF02570 CbiC: Precorrin-8X me 28.3 1E+02 0.0022 27.8 4.5 48 81-128 126-177 (198)
452 TIGR00644 recJ single-stranded 28.1 7.1E+02 0.015 26.6 11.7 96 147-247 38-136 (539)
453 PF12262 Lipase_bact_N: Bacter 28.1 53 0.0011 31.2 2.9 22 1-25 1-22 (268)
454 PF01745 IPT: Isopentenyl tran 28.1 41 0.00088 30.7 2.0 31 97-127 2-32 (233)
455 PRK09973 putative outer membra 28.1 54 0.0012 24.8 2.3 22 1-24 1-22 (85)
456 PF02698 DUF218: DUF218 domain 27.7 3.2E+02 0.0069 23.1 7.6 97 149-248 22-123 (155)
457 TIGR00177 molyb_syn molybdenum 27.6 3.6E+02 0.0077 22.8 7.7 47 181-230 28-74 (144)
458 PRK04284 ornithine carbamoyltr 27.6 6.1E+02 0.013 25.1 16.0 133 34-199 47-186 (332)
459 cd06314 PBP1_tmGBP Periplasmic 27.4 2.5E+02 0.0054 26.4 7.6 75 168-244 2-78 (271)
460 TIGR00363 lipoprotein, YaeC fa 27.4 1.5E+02 0.0032 28.1 5.8 43 30-83 17-59 (258)
461 cd01574 PBP1_LacI Ligand-bindi 27.3 3.5E+02 0.0075 25.1 8.6 61 168-230 2-64 (264)
462 PTZ00088 adenylate kinase 1; P 27.2 62 0.0013 30.1 3.1 29 99-127 9-37 (229)
463 PF13377 Peripla_BP_3: Peripla 27.1 3.8E+02 0.0082 22.5 10.0 118 34-162 11-136 (160)
464 cd08172 GlyDH-like1 Glycerol d 26.6 3.3E+02 0.0071 27.1 8.5 81 154-239 13-95 (347)
465 PRK09861 cytoplasmic membrane 26.6 4E+02 0.0086 25.5 8.6 25 278-302 228-252 (272)
466 cd02070 corrinoid_protein_B12- 26.6 4.8E+02 0.01 23.5 10.8 76 166-247 83-162 (201)
467 cd06294 PBP1_ycjW_transcriptio 26.5 3.2E+02 0.0069 25.5 8.2 69 175-247 16-84 (270)
468 COG1058 CinA Predicted nucleot 26.3 3.3E+02 0.0072 25.7 7.7 48 180-230 21-68 (255)
469 PRK05953 precorrin-8X methylmu 26.2 1.1E+02 0.0024 27.7 4.3 48 81-128 126-177 (208)
470 TIGR02717 AcCoA-syn-alpha acet 26.2 7.5E+02 0.016 25.7 12.7 145 83-247 74-229 (447)
471 PRK06264 cbiC precorrin-8X met 26.1 1.2E+02 0.0026 27.6 4.6 68 48-128 114-185 (210)
472 smart00857 Resolvase Resolvase 26.1 3.9E+02 0.0084 22.3 10.1 72 149-246 17-95 (148)
473 cd06578 HemD Uroporphyrinogen- 26.0 5E+02 0.011 23.6 9.7 87 152-245 107-195 (239)
474 PRK05452 anaerobic nitric oxid 25.9 7.9E+02 0.017 25.8 13.9 140 101-260 198-348 (479)
475 COG1638 DctP TRAP-type C4-dica 25.8 3.3E+02 0.0072 27.0 8.1 61 31-103 28-90 (332)
476 TIGR03590 PseG pseudaminic aci 25.7 4.9E+02 0.011 24.9 9.2 80 154-244 21-101 (279)
477 KOG2792 Putative cytochrome C 25.7 2.5E+02 0.0055 26.4 6.5 72 47-125 156-227 (280)
478 cd02069 methionine_synthase_B1 25.4 5.3E+02 0.011 23.6 9.9 84 166-257 89-176 (213)
479 cd06293 PBP1_LacI_like_11 Liga 25.3 3.2E+02 0.007 25.5 8.0 61 168-231 2-64 (269)
480 COG2247 LytB Putative cell wal 25.3 6.5E+02 0.014 24.6 13.0 78 97-198 77-159 (337)
481 cd03522 MoeA_like MoeA_like. T 25.3 4.6E+02 0.01 25.7 8.8 67 163-231 157-228 (312)
482 COG3439 Uncharacterized conser 25.3 2.2E+02 0.0049 23.9 5.8 70 179-257 22-93 (137)
483 PF13662 Toprim_4: Toprim doma 25.2 1.7E+02 0.0038 21.6 4.8 33 165-197 46-78 (81)
484 PF02310 B12-binding: B12 bind 25.2 3.5E+02 0.0077 21.5 7.5 69 153-229 17-86 (121)
485 PRK11553 alkanesulfonate trans 25.2 2.3E+02 0.005 27.6 7.0 57 163-229 127-183 (314)
486 PRK05752 uroporphyrinogen-III 25.0 3.3E+02 0.0073 25.6 7.8 84 153-242 113-201 (255)
487 PRK07524 hypothetical protein; 24.9 2.4E+02 0.0052 30.1 7.6 60 85-145 189-250 (535)
488 PRK06760 hypothetical protein; 24.9 65 0.0014 29.2 2.6 35 1-36 1-37 (223)
489 PF03853 YjeF_N: YjeF-related 24.9 3.7E+02 0.008 23.5 7.5 73 152-225 8-84 (169)
490 TIGR01481 ccpA catabolite cont 24.9 5.4E+02 0.012 24.9 9.8 79 164-246 58-138 (329)
491 PRK02261 methylaspartate mutas 24.7 4.2E+02 0.0091 22.2 10.2 77 166-248 4-84 (137)
492 PF07172 GRP: Glycine rich pro 24.7 59 0.0013 25.3 2.1 10 3-12 4-13 (95)
493 cd01483 E1_enzyme_family Super 24.6 4.1E+02 0.009 22.1 8.7 72 45-128 50-121 (143)
494 PRK08273 thiamine pyrophosphat 24.6 1.6E+02 0.0034 32.1 6.1 61 85-146 196-258 (597)
495 cd01541 PBP1_AraR Ligand-bindi 24.5 3.8E+02 0.0083 25.0 8.3 76 168-246 2-83 (273)
496 PF11839 DUF3359: Protein of u 24.5 68 0.0015 24.9 2.3 21 1-24 1-21 (96)
497 PRK13054 lipid kinase; Reviewe 24.5 4.8E+02 0.01 25.3 9.0 75 166-244 4-78 (300)
498 cd06291 PBP1_Qymf_like Ligand 24.5 5.7E+02 0.012 23.6 11.2 118 34-160 114-239 (265)
499 PF02402 Lysis_col: Lysis prot 24.4 30 0.00066 22.2 0.4 37 1-43 1-37 (46)
500 PRK13814 pyrB aspartate carbam 24.4 6.8E+02 0.015 24.5 12.7 136 34-198 47-189 (310)
No 1
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=8.9e-64 Score=479.55 Aligned_cols=483 Identities=17% Similarity=0.238 Sum_probs=399.0
Q ss_pred CCCCeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCC-CcEEEEEEecCC-CCHHHHHHHHHHhHhcCcEEEEcCC
Q 008205 28 TIPPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILG-GTKLKLTVHDTN-YSRFLGMVEALTLLENETVAIIGPQ 105 (574)
Q Consensus 28 ~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~-g~~l~~~~~d~~-~~~~~a~~~~~~l~~~~v~aiiGp~ 105 (574)
+-+.+|.||++||.++ .+...|+++|+...|.+++--+ -++|.+++.... .+++..+.+.|+..++||.||+|-.
T Consensus 22 ~f~~tiqigglF~~n~---~qe~~Afr~~~~~~~~~~~~~~~pf~L~~~~d~~e~a~Sf~~tnafCsq~s~Gv~Aifg~y 98 (897)
T KOG1054|consen 22 AFPNTIQIGGLFPRNT---DQEHSAFRFAVQLYNTNQNTTEKPFKLNPHVDNLESANSFAVTNAFCSQFSRGVYAIFGFY 98 (897)
T ss_pred cCCCceeeccccCCcc---hHHHHHHHHHHHHhhcCCCCCCCCcccccccchhhhhhhHHHHHHHHHHHhhhHhhheecc
Confidence 4578899999999976 4678899999999887554211 167777766554 4889999999999999999999999
Q ss_pred ChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHH
Q 008205 106 FSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAAL 185 (574)
Q Consensus 106 ~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l 185 (574)
...+...+.++|+..++|.|+++.+. +...++.+++.|+- ..++++++.||+|.+|.++| |.+.|...++.+
T Consensus 99 d~ks~~~ltsfc~aLh~~~vtpsfp~----~~~~~Fviq~RP~l---~~al~s~i~hy~W~~fv~ly-D~~rg~s~Lqai 170 (897)
T KOG1054|consen 99 DKKSVNTLTSFCGALHVSFVTPSFPT----DGDNQFVIQMRPAL---KGALLSLIDHYKWEKFVYLY-DTDRGLSILQAI 170 (897)
T ss_pred cccchhhhhhhccceeeeeecccCCc----CCCceEEEEeCchH---HHHHHHHHHhcccceEEEEE-cccchHHHHHHH
Confidence 99999999999999999999975422 23457889999985 48999999999999999999 555788899999
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccC
Q 008205 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILD 265 (574)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~ 265 (574)
.+.+.++++.|.....-. ..+..+++.+++.+...+.+.|+++|..+...+++.++.+.+-...+||||+.+......|
T Consensus 171 ~~~a~~~nw~VtA~~v~~-~~d~~~yr~~f~~l~~r~e~rv~iDce~~~~~~il~q~i~~~k~~~~YHYvlaNl~f~d~d 249 (897)
T KOG1054|consen 171 MEAAAQNNWQVTAINVGN-INDVKEYRMLFEMLDRRQENRVLIDCESERRNRILLQVIELGKHVKGYHYVLANLGFTDID 249 (897)
T ss_pred HHHHHhcCceEEEEEcCC-cccHHHHHHHHHHHhccccceEEEEcccHHHHHHHHHHHHHhhhccceEEEEeeCCCchhh
Confidence 999999999998775333 2456679999999999999999999999999999999999999899999999987655444
Q ss_pred CCCcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhc-cCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCc
Q 008205 266 TDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTR-RNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNI 344 (574)
Q Consensus 266 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~ 344 (574)
+ +.+.....++++|+..+.+.+..++|.++|++... .+++....++...+++.|||+.++++|++.+.++..++
T Consensus 250 l-----~~f~~g~aNitgFqivn~~~~~~~k~~~~~~~l~~~~~~g~~~~~~k~tsAlthDailV~~eaf~~~~~q~~~~ 324 (897)
T KOG1054|consen 250 L-----ERFQHGGANITGFQIVNKNNPMVKKFIQRWKELDEREYPGASNDPIKYTSALTHDAILVMAEAFRSLRRQRIDI 324 (897)
T ss_pred H-----HHHhcCCcceeEEEEecCCChHHHHHHHHHhhhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhhhch
Confidence 4 45667888999999999999999999999987664 34555556677889999999999999999998876544
Q ss_pred cccCCcccccccCCCcccc--cccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeecCeEEEEEEeeCC
Q 008205 345 SFSEDSKLSELSRGDMRFS--SVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNH 422 (574)
Q Consensus 345 ~~~~~~~~~~~~~~~~~c~--~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~~~~~~VG~w~~~ 422 (574)
... +...+|. +..+|.+|..+.+++++++++|+||+|+||..|.|.|++.+|+++..++.+++|.|+..
T Consensus 325 ~rR---------G~~GD~~an~~~p~~qG~~I~ralk~v~~eGLTGniqFd~~G~R~Nyt~~i~elk~~~~rk~~~W~e~ 395 (897)
T KOG1054|consen 325 SRR---------GNAGDCLANPAVPWEQGIDIERALKQVQVEGLTGNIQFDKYGRRTNYTIDIVELKSNGSRKVGYWNEG 395 (897)
T ss_pred hcc---------CCCccccCCCCCchhcchhHHHHHHheeecccccceeecccCccccceEEEEEeccCCcceeeeeccc
Confidence 321 2233453 35689999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCcccccCCCCCCCCCccccceeecCCCCccCCCcee-ecCCCCceEEeccCccccccce---eccCCCccccee
Q 008205 423 SGLSVVPPEALYKEPSNRSASSQHLYSAVWPGQTTQKPRGWV-FPNNGRHLRIGVPSQVIYPEFV---AQGKGTDKFSGY 498 (574)
Q Consensus 423 ~gl~~~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~~~-~~~~~~~~~v~~~~~~~~~~~~---~~~~g~~~~~G~ 498 (574)
.|+....... +.+.. -..++++..|.++.+-||.+.. ..++||+|||||
T Consensus 396 ~~fv~~~t~a---------------------------~~~~d~~~~~n~tvvvttiL~spyvm~kkn~~~~egn~ryEGy 448 (897)
T KOG1054|consen 396 EGFVPGSTVA---------------------------QSRNDQASKENRTVVVTTILESPYVMLKKNHEQLEGNERYEGY 448 (897)
T ss_pred Cceeeccccc---------------------------cccccccccccceEEEEEecCCchhHHHhhHHHhcCCccccee
Confidence 8876543210 00000 0013566677777776776654 346899999999
Q ss_pred eHHHHHHHHHhCCCCcCeEEEECCCCC-----CCCC-hHHHHHHhhhcccccccccccceeeeEEEEeeCc----eeeec
Q 008205 499 CIDVFTAVLELLPYAVPYKLVPFGDGH-----NSPK-RFDLLRLVSEEVSMKRKKIFFNLVILFAILANGG----FLVPC 568 (574)
Q Consensus 499 ~idl~~~~~~~l~f~~~y~~~~~~dg~-----~~~~-~~gli~~l~~~~~d~~~~~~~~~~~~~~~~~~~~----~~v~f 568 (574)
||||+.+||+.++++ |++..++||+ .+++ ||||||+|+.|+||+| |+++|||-+|| |++||
T Consensus 449 CvdLa~~iAkhi~~~--Y~l~iv~dgkyGardaD~k~WnGMvGeLv~grAdia-------vApLTIt~~REeviDFSKPf 519 (897)
T KOG1054|consen 449 CVDLAAEIAKHIGIK--YKLFIVGDGKYGARDADTKIWNGMVGELVYGRADIA-------VAPLTITLVREEVIDFSKPF 519 (897)
T ss_pred HHHHHHHHHHhcCce--EEEEEecCCcccccCCCcccccchhHHHhcCccceE-------Eeeeeeehhhhhhhccccch
Confidence 999999999999999 9999999987 5666 9999999999999999 99999999998 99999
Q ss_pred cccc
Q 008205 569 RSMT 572 (574)
Q Consensus 569 ~~~~ 572 (574)
|||-
T Consensus 520 MslG 523 (897)
T KOG1054|consen 520 MSLG 523 (897)
T ss_pred hhcC
Confidence 9985
No 2
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel
Probab=100.00 E-value=3e-55 Score=436.15 Aligned_cols=368 Identities=19% Similarity=0.284 Sum_probs=295.6
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEE-ecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTV-HDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~-~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 112 (574)
+||+||+..+ ...+.||++|++++|.+..++++.+|.+.+ +++.+|++.+++++|+++++||.|||||.++.++..
T Consensus 1 ~iG~if~~~~---~~~~~af~~Av~~~N~~~~~l~~~~L~~~~~~~~~~d~F~~~~~ac~l~~~gV~AI~Gp~s~~~a~~ 77 (400)
T cd06392 1 HIGAIFEENA---AKDDRVFQLAVSDLSLNDDILQSEKITYSIKSIEANNPFQAVQEACDLMTQGILALVTSTGCASANA 77 (400)
T ss_pred CeeeccCCCc---hHHHHHHHHHHHHhccCccccCCceEEEEEEecCCCChhHHHHHHHHHHhcCeEEEECCCchhHHHH
Confidence 4899999865 357899999999999999999999999999 888899999999999999999999999999999999
Q ss_pred HHHhhccCCccEEecccC-----------CCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcch
Q 008205 113 VSHIANEFQVPLLSFAAT-----------DPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNG 181 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~-----------~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~ 181 (574)
++++|+.++||+|+++.. +|.++.. +|.+.+.|+ ..+..|+++++++|+|++|++|| |+++|...
T Consensus 78 v~sic~~l~VP~is~~~~~~~~~~~~~~~~p~~~~~--~~~~~lrp~-~~~~~Ai~dlV~~~~W~~v~~iY-D~d~gl~~ 153 (400)
T cd06392 78 LQSLTDAMHIPHLFVQRNSGGSPRTACHLNPSPEGE--EYTLAARPP-VRLNDVMLKLVTELRWQKFIVFY-DSEYDIRG 153 (400)
T ss_pred HHHHhccCcCCcEeecccccccccccccCCCCcCcC--ceeEEecCc-hHHHHHHHHHHHhCCCcEEEEEE-ECcccHHH
Confidence 999999999999998552 2333333 455556665 46788999999999999999999 77899999
Q ss_pred HHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCC-------CeEEEEEeChHHHHHHHHHHHHCCCCCCCeEE
Q 008205 182 IAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMM-------SRILILHTYDIWGLEVLNAAKHLRMMESGYVW 254 (574)
Q Consensus 182 ~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~-------~~viil~~~~~~~~~il~~a~~~gm~~~~~~~ 254 (574)
++.|.+.+.+.++.|.+.. +... ...++.+.++.++... .++||++|+++.+..+|++|.++||+..+|||
T Consensus 154 lq~L~~~~~~~~~~I~~~~-v~~~-~~~~~~~~l~~~~~~~L~~~~~~~r~iVv~~s~~~~~~il~qA~~lgM~~~~y~w 231 (400)
T cd06392 154 LQSFLDQASRLGLDVSLQK-VDRN-ISRVFTNLFTTMKTEELNRYRDTLRRAILLLSPRGAQTFINEAVETNLASKDSHW 231 (400)
T ss_pred HHHHHHHHhhcCceEEEEE-cccC-cchhhhhHHHHHHHhhhhhccccceEEEEEcCcHHHHHHHHHHHHhCcccCCeEE
Confidence 9999999999999988765 3211 1113445555544433 48999999999999999999999999999999
Q ss_pred EEeCccccccCCCCcCChhhhhhcc-ceEEEEEecCCChHHHHHH----HHHHHhhccCCCCCCCCCChhHHHHHHHHHH
Q 008205 255 IVTDWLSSILDTDSQLHSEKMDDIQ-GVLTLRMYTQSSEEKRKFV----TRWRHLTRRNTLNGPIGLNSFGLYAYDTLWL 329 (574)
Q Consensus 255 i~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~f~----~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~ 329 (574)
|++++.....+. .++..... ++++++.+.+.+....+|. .+|++............+..+++++||||++
T Consensus 232 I~t~~~~~~~dl-----~~~~~g~~~niT~~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~aalayDaV~~ 306 (400)
T cd06392 232 VFVNEEISDTEI-----LELVHSALGRMTVIRQIFPLSKDNNQRCIRNNHRISSLLCDPQEGYLQMLQVSNLYLYDSVLM 306 (400)
T ss_pred EEecCCcccccH-----HHHhcccccceeeEEEecCCcHHHHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHHH
Confidence 999998775554 34555565 7888999887776555443 5665433211111111467889999999999
Q ss_pred HHHHHHHHhhcCCCccccCCcccccccCCCccc--ccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEE
Q 008205 330 LAHAIGAFFDQGGNISFSEDSKLSELSRGDMRF--SSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVIN 407 (574)
Q Consensus 330 ~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c--~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~ 407 (574)
+|+|++++++..... ....+.| ....+|++|..|+++|++++|+|+||+|+||++|+|.++.|+|+|
T Consensus 307 ~A~Al~~ll~~~~~~-----------~~~~l~C~~~~~~~w~~G~~ll~~ik~v~f~GLTG~I~F~~~G~r~~~~ldIi~ 375 (400)
T cd06392 307 LANAFHRKLEDRKWH-----------SMASLNCIRKSTKPWNGGRSMLETIKKGHITGLTGVMEFKEDGANPHVQFEILG 375 (400)
T ss_pred HHHHHHHHhhccccC-----------CCCCCccCCCCCCCCCChHHHHHHHHhCCCccCccceeECCCCCCcCCceEEEe
Confidence 999999865432221 1223567 457799999999999999999999999999999999999999999
Q ss_pred ee-----cCeEEEEEEeeCCCCCc
Q 008205 408 VI-----GTGSRRIGYWSNHSGLS 426 (574)
Q Consensus 408 ~~-----~~~~~~VG~w~~~~gl~ 426 (574)
++ +.++++||+|++.+||+
T Consensus 376 l~~~~~~g~g~~~iG~W~~~~gl~ 399 (400)
T cd06392 376 TSYSETFGKDVRRLATWDSEKGLN 399 (400)
T ss_pred ccccccCCCCceEeEEecCCCCCC
Confidence 66 55699999999998864
No 3
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=100.00 E-value=1.2e-54 Score=430.78 Aligned_cols=366 Identities=15% Similarity=0.210 Sum_probs=309.0
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCC-cEEEEEEecCC-CCHHHHHHHHHHhHhcCcEEEEcCCChHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGG-TKLKLTVHDTN-YSRFLGMVEALTLLENETVAIIGPQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g-~~l~~~~~d~~-~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~ 111 (574)
.||+||+.++ ...+.||++|++.+|.+..+++. .+|.+.+.... .|++++.+++|+++++||.||+||.++.++.
T Consensus 1 ~iG~iF~~~~---~~~~~aF~~Av~~~N~~~~~~~~~~~l~~~i~~~~~~dsf~~~~~~C~l~~~GV~AIfGp~~~~s~~ 77 (372)
T cd06387 1 SIGGLFMRNT---VQEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGVYAIFGFYDQMSMN 77 (372)
T ss_pred CcceeecCCc---HHHHHHHHHHHHHhcccccccccCeEEEEeeEEecCCChHHHHHHHHHHhhcccEEEEecCCHhHHH
Confidence 3899999765 46789999999999999877765 58888776555 4999999999999999999999999999999
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhh
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAE 191 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~ 191 (574)
+++++|+.++||+|.+.... +...++.+++.|+ ++.|+++++++|+|++|++|| |+++|...++.|.+.+..
T Consensus 78 ~v~s~c~~~~iP~i~~~~~~----~~~~~~~l~l~P~---l~~Ai~diI~~~~Wr~~~~iY-d~d~gl~~Lq~L~~~~~~ 149 (372)
T cd06387 78 TLTSFCGALHTSFITPSFPT----DADVQFVIQMRPA---LKGAILSLLAHYKWEKFVYLY-DTERGFSILQAIMEAAVQ 149 (372)
T ss_pred HHHHhhccccCCeeeeCCCC----CCCCceEEEEChh---HHHHHHHHHHhcCCCEEEEEe-cCchhHHHHHHHHHhhcc
Confidence 99999999999999873321 2344788999998 689999999999999999999 667888899999999999
Q ss_pred cCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCcCC
Q 008205 192 KRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLH 271 (574)
Q Consensus 192 ~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~~~ 271 (574)
.++.|......+. .+..+++.++++|++.+.++||++|+++.+..+|++|.++||++.+||||+++......+.
T Consensus 150 ~~~~V~~~~v~~~-~~~~~~~~~l~el~~~~~r~iIld~s~~~~~~il~~a~e~gM~~~~y~~ilt~ld~~~~dl----- 223 (372)
T cd06387 150 NNWQVTARSVGNI-KDVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDISL----- 223 (372)
T ss_pred CCceEEEEEeccC-CchHHHHHHHHHhccccceEEEEECCHHHHHHHHHHHHHcCccccceEEEEecCCcccccH-----
Confidence 9988877654332 2456899999999999999999999999999999999999999999999999976655554
Q ss_pred hhhhhhccceEEEEEecCCChHHHHHHHHHHHhhcc-CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCccccCCc
Q 008205 272 SEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRR-NTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDS 350 (574)
Q Consensus 272 ~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~ 350 (574)
.++.....|++|+++..+.++..++|.++|++.... +++....+++.+++++||||+++|.|++++.+.+..++..
T Consensus 224 ~~~~~g~~NItg~rl~~~~~~~~~~f~~~w~~~~~~~~~~~~~~~l~~~~al~yDaV~~~A~A~~~l~~~~~~~~~~--- 300 (372)
T cd06387 224 ERVMHGGANITGFQIVNNENPMVQQFLQRWVRLDEREFPEAKNSPLKYTSALTHDAILVIAEAFRYLRRQRVDVSRR--- 300 (372)
T ss_pred HHhccCCcceeEEEEecCCCchHHHHHHHHHhCCcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcccC---
Confidence 345556677999999999999999999999876542 3333334567889999999999999999986544332111
Q ss_pred ccccccCCCccccc--ccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeecCeEEEEEEeeCCCCC
Q 008205 351 KLSELSRGDMRFSS--VSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGL 425 (574)
Q Consensus 351 ~~~~~~~~~~~c~~--~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~~~~~~VG~w~~~~gl 425 (574)
+....|.. ..+|.+|..|+++|++++|+|+||+++|+++|+|.++.|+|+|+.++++++||+|++..|+
T Consensus 301 ------~~~~~C~~~~~~~W~~G~~l~~~ik~v~~~GLTG~i~F~~~G~R~~~~ldIinl~~~g~~kIG~W~~~~g~ 371 (372)
T cd06387 301 ------GSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKPSGSRKAGYWNEYERF 371 (372)
T ss_pred ------CCCCCcCCCCCCCccchHHHHHHHHhcccCCCccceeeCCCCCcccceEEEEEecCCCceeEEEECCCCCc
Confidence 12335643 4589999999999999999999999999999999999999999999999999999998876
No 4
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=100.00 E-value=3.7e-54 Score=428.84 Aligned_cols=359 Identities=16% Similarity=0.245 Sum_probs=302.3
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEec-CCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHD-TNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d-~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 112 (574)
+||+||+.++ ...+.||++|++++|.+..++| .+.. ...|++++.+++|+++++||.|||||.++.++..
T Consensus 1 ~iG~if~~~~---~~~~~af~~av~~~N~~~~l~~------~~~~~~~~dsf~~~~~~C~~~~~gV~AI~Gp~s~~~a~~ 71 (364)
T cd06390 1 QIGGLFPNQQ---SQEHAAFRFALSQLTEPPKLLP------QIDIVNISDSFEMTYTFCSQFSKGVYAIFGFYDRKTVNM 71 (364)
T ss_pred CCceeeCCCC---hHHHHHHHHHHHHhccCccccc------ceEEeccccHHHHHHHHHHHhhcCceEEEccCChhHHHH
Confidence 4899998764 4678999999999999875543 2222 2358999999999999999999999999999999
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhc
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEK 192 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~ 192 (574)
++++|+.++||+|++.+ |..+ ..+|++++.|+ +++|+++++++|+|++|++||+++ +|...++.|.+.+.+.
T Consensus 72 v~sic~~~~vP~i~~~~--~~~~--~~~~~i~~~P~---~~~Ai~diI~~~~W~~v~iIYd~d-~g~~~lq~l~~~~~~~ 143 (364)
T cd06390 72 LTSFCGALHVCFITPSF--PVDT--SNQFVLQLRPE---LQDALISVIEHYKWQKFVYIYDAD-RGLSVLQKVLDTAAEK 143 (364)
T ss_pred HHHhhcCCCCCceecCC--CCCC--CCceEEEeChh---HHHHHHHHHHHcCCcEEEEEEeCC-ccHHHHHHHHHhhhcc
Confidence 99999999999999744 3222 33679999998 789999999999999999999655 9999999999999999
Q ss_pred CcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCcCCh
Q 008205 193 RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHS 272 (574)
Q Consensus 193 g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~~~~ 272 (574)
|++|.....++ .+..+++.+|+++++.++++||++|+++.+..+|+++.+.+|+..+||||+++......+. +
T Consensus 144 ~~~I~~~~~~~--~~~~d~~~~L~~ik~~~~rvIVl~~~~~~~~~~L~~a~~~~~~~~gy~wI~t~l~~~~~~~-----~ 216 (364)
T cd06390 144 NWQVTAVNILT--TTEEGYRKLFQDLDKKKERLIVVDCESERLNAILNQIIKLEKNGIGYHYILANLGFMDIDL-----T 216 (364)
T ss_pred CceeeEEEeec--CChHHHHHHHHhccccCCeEEEEECCHHHHHHHHHHHHHhhccCCceEEEecCCCcccccH-----H
Confidence 99998776555 3456899999999999999999999999999999999999899999999999955443332 4
Q ss_pred hhhhhccceEEEEEecCCChHHHHHHHHHHHhhcc-CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCccccCCcc
Q 008205 273 EKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRR-NTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSK 351 (574)
Q Consensus 273 ~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~ 351 (574)
++.....|++|++++.+.++..++|.++|++.... ++..+...+..+++++||||+++|+|++++.+.+..++..
T Consensus 217 ~~~~~~~nitg~r~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~yDaV~~~A~A~~~l~~~~~~~~~~---- 292 (364)
T cd06390 217 KFRESGANVTGFQLVNYTDTTVSRIMQQWKNFDARDLPRVDWKRPKYTSALTYDGVRVMAEAFQNLRKQRIDISRR---- 292 (364)
T ss_pred HHhcCCcCceEEEEecCCCHHHHHHHHHHHhhccccCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHcCCCcccC----
Confidence 56678999999999999999999999999876542 3334444577899999999999999999986654433211
Q ss_pred cccccCCCccccc--ccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeecCeEEEEEEeeCCCCC
Q 008205 352 LSELSRGDMRFSS--VSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGL 425 (574)
Q Consensus 352 ~~~~~~~~~~c~~--~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~~~~~~VG~w~~~~gl 425 (574)
+....|.. ..+|.+|..|+++|++++|+|+||+|+||++|+|.++.|+|+|+.+.++++||+|++.+||
T Consensus 293 -----~~~~~C~~~~~~~w~~G~~l~~~i~~~~f~GlTG~i~F~~~G~r~~~~~~I~~~~~~g~~~vG~W~~~~g~ 363 (364)
T cd06390 293 -----GNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNEDEKL 363 (364)
T ss_pred -----CCCCCCCCCCCCCCccHHHHHHHHHhhcccccccceeeCCCCCcccceEEEEEecCCcceEEEEECCCCCc
Confidence 11234543 4479999999999999999999999999999999999999999999999999999998876
No 5
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=100.00 E-value=3.7e-52 Score=422.18 Aligned_cols=371 Identities=19% Similarity=0.271 Sum_probs=313.5
Q ss_pred eEEEEEEec-cC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-CHHHHHHHHHHhHhcCcEEEEcCCC
Q 008205 32 VLNIGAVFA-LN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNY-SRFLGMVEALTLLENETVAIIGPQF 106 (574)
Q Consensus 32 ~i~IG~l~~-~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~-~~~~a~~~~~~l~~~~v~aiiGp~~ 106 (574)
.|+||+++| ++ +..|...+.|+++|+++||+++++||+.+|.+.+.+.++ ++..+.+.+|+++.++|.|||||.+
T Consensus 2 ~i~IG~i~~~~tg~~~~~g~~~~~a~~~Av~~IN~~~~il~~~~l~~~~~~~~~~d~~~~~~~~~~~l~~~V~AiiGp~~ 81 (384)
T cd06393 2 VIRIGGIFEYLDGPNNQVMSAEELAFRFSANIINRNRTLLPNTTLTYDIQRIHFHDSFEATKKACDQLALGVVAIFGPSQ 81 (384)
T ss_pred eeeEEEeecCCcccccccCcHHHHHHHHHHHHhcCCCccCCCceEEEEEEecccccchhHHHHhhcccccCcEEEECCCC
Confidence 589999999 44 556778899999999999999999999999999998765 7778889999988889999999999
Q ss_pred hHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHH
Q 008205 107 SVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALG 186 (574)
Q Consensus 107 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~ 186 (574)
|..+.+++++|+.++||+|+++++++.+++. .++++|+.|++..++.++++++++|+|++|++||+++. |...++.+.
T Consensus 82 S~~~~av~~i~~~~~iP~Is~~~t~~~lt~~-~~~~~~~~~~~~~~~~a~~~~~~~~~wk~vaily~~~~-g~~~l~~~~ 159 (384)
T cd06393 82 GSCTNAVQSICNALEVPHIQLRWKHHPLDNK-DTFYVNLYPDYASLSHAILDLVQYLKWRSATVVYDDST-GLIRLQELI 159 (384)
T ss_pred hHHHHHHHHHHhccCCCeEeccCCCcccCcc-ceeEEEeccCHHHHHHHHHHHHHHcCCcEEEEEEeCch-hHHHHHHHH
Confidence 9999999999999999999998888878754 35788999999889999999999999999999997664 666667888
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCC
Q 008205 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDT 266 (574)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~ 266 (574)
+.+++.|++|... .++ .+..|++.+|++||..++++||+++..+.+..+++||+++||+.+.|+|++++......+.
T Consensus 160 ~~~~~~g~~v~~~-~~~--~~~~d~~~~L~~ik~~~~~~iil~~~~~~~~~il~qa~~~gm~~~~~~~~~~~~~~~~~~~ 236 (384)
T cd06393 160 MAPSRYNIRLKIR-QLP--TDSDDARPLLKEMKRGREFRIIFDCSHQMAAQILKQAMAMGMMTEYYHFIFTTLDLYALDL 236 (384)
T ss_pred HhhhccCceEEEE-ECC--CCchHHHHHHHHHhhcCceEEEEECCHHHHHHHHHHHHHhccccCceEEEEccCccccccc
Confidence 8888889998864 354 3567999999999999999999999999999999999999999999999998875544443
Q ss_pred CCcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHh-hccCCCCC----CCCCChhHHHHHHHHHHHHHHHHHHhhcC
Q 008205 267 DSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHL-TRRNTLNG----PIGLNSFGLYAYDTLWLLAHAIGAFFDQG 341 (574)
Q Consensus 267 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~----~~~~~~~~~~~yDav~~~a~Al~~~~~~~ 341 (574)
+.+.....++++++..++..+.+++|+++|++. ++..+... ...+...++++||||+++++|++++.+..
T Consensus 237 -----~~~~~~~~~it~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aal~yDav~~~a~A~~~~~~~~ 311 (384)
T cd06393 237 -----EPYRYSGVNLTGFRILNVDNPHVSSIVEKWSMERLQAAPKPETGLLDGVMMTDAALLYDAVHMVSVCYQRAPQMT 311 (384)
T ss_pred -----hhhhcCcceEEEEEecCCCcHHHHHHHHHHHhhhhccccccccccccccccchhHHhhhhHHHHHHHHhhhhhcC
Confidence 222234455789999888899999999999753 43222111 01235679999999999999999653221
Q ss_pred CCccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcC-CCCCCCCcEEEEEeecCeEEEEEEee
Q 008205 342 GNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTS-DRDLINPAYEVINVIGTGSRRIGYWS 420 (574)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~-~G~r~~~~~~i~~~~~~~~~~VG~w~ 420 (574)
...+.|....+|++|..|+++|++++|+|+||+++||+ +|+|.++.++|+|+.++++++||+|+
T Consensus 312 ---------------~~~~~c~~~~~w~~G~~i~~~l~~~~~~GltG~i~Fd~~~g~r~~~~~~i~~~~~~g~~~vg~W~ 376 (384)
T cd06393 312 ---------------VNSLQCHRHKAWRFGGRFMNFIKEAQWEGLTGRIVFNKTSGLRTDFDLDIISLKEDGLEKVGVWN 376 (384)
T ss_pred ---------------CCCCCCCCCCCCcccHHHHHHHhheeecccccceEecCCCCeeeeeEEEEEEecCCcceeeEEEc
Confidence 12456888889999999999999999999999999996 68999999999999999999999999
Q ss_pred CCCCCcc
Q 008205 421 NHSGLSV 427 (574)
Q Consensus 421 ~~~gl~~ 427 (574)
+..||++
T Consensus 377 ~~~g~~~ 383 (384)
T cd06393 377 PNTGLNI 383 (384)
T ss_pred CCCCcCC
Confidence 9998864
No 6
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=100.00 E-value=7.1e-51 Score=407.33 Aligned_cols=365 Identities=18% Similarity=0.229 Sum_probs=298.5
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCC-CcEEEEEEecCCC-CHHHHHHHHHHhHhcCcEEEEcCCChHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILG-GTKLKLTVHDTNY-SRFLGMVEALTLLENETVAIIGPQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~-g~~l~~~~~d~~~-~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~ 111 (574)
+||+||+.++ .+...||++|++.+|.+...++ +.+|.+++..... |++.+.+++|+++++||.|||||.+|..+.
T Consensus 1 ~iG~if~~~~---~~~~~af~~a~~~~n~~~~~~~~~~~l~~~~~~~~~~dsf~~~~~~C~~~~~gV~AI~Gp~ss~~~~ 77 (371)
T cd06388 1 QIGGLFIRNT---DQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYDKRSVH 77 (371)
T ss_pred CCceeecCCc---hHHHHHHHHHHHHhhccccccccceEEeeeeeecCCCChhHHHHHHHHHHhCCceEEEecCCHHHHH
Confidence 4899999754 3568999999999998875433 2688887776654 999999999999999999999999999999
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhh
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAE 191 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~ 191 (574)
+++++|+.++||+|++.++ +...+.|.+++.|+ +..++++++++|+|++|+++|+++ ++...++.|.+.++.
T Consensus 78 ~v~~i~~~~~IP~I~~~~~----~~~~~~f~i~~~p~---~~~a~~~~i~~~~wk~vaiiYd~~-~~~~~lq~l~~~~~~ 149 (371)
T cd06388 78 TLTSFCSALHISLITPSFP----TEGESQFVLQLRPS---LRGALLSLLDHYEWNRFVFLYDTD-RGYSILQAIMEKAGQ 149 (371)
T ss_pred HHHHHhhCCCCCeeecCcc----ccCCCceEEEeChh---hhhHHHHHHHhcCceEEEEEecCC-ccHHHHHHHHHhhHh
Confidence 9999999999999997543 12345666777777 468899999999999999999544 566789999999999
Q ss_pred cCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCcCC
Q 008205 192 KRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLH 271 (574)
Q Consensus 192 ~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~~~ 271 (574)
.|+.|......+ .+..|++.+|++|+++++++||++|+++.+..|++||+++||+.++||||+++......+.
T Consensus 150 ~g~~v~~~~~~~--~~~~d~~~~L~~ik~~~~~~iil~~~~~~~~~il~qa~~~gm~~~~y~~il~~~~~~~~~l----- 222 (371)
T cd06388 150 NGWQVSAICVEN--FNDASYRRLLEDLDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKDISL----- 222 (371)
T ss_pred cCCeeeeEEecc--CCcHHHHHHHHHhcccccEEEEEECCHHHHHHHHHHHHhcCccccceEEEEccCccccccH-----
Confidence 999887655433 2356999999999999999999999999999999999999999999999999864333322
Q ss_pred hhhhhhccceEEEEEecCCChHHHHHHHHHHHhhcc-CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCccccCCc
Q 008205 272 SEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRR-NTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDS 350 (574)
Q Consensus 272 ~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~ 350 (574)
.++.....+++++++.++..+..++|+++|++.+.. +++.. ..+...++++||||++++.|++++.+.....+.
T Consensus 223 ~~~~~g~~nitg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~aAl~YDaV~l~a~A~~~l~~~~~~~~~---- 297 (371)
T cd06388 223 ERFMHGGANVTGFQLVDFNTPMVTKLMQRWKKLDQREYPGSE-SPPKYTSALTYDGVLVMAEAFRNLRRQKIDISR---- 297 (371)
T ss_pred HHHhccCCceEEEEeecCCChhHHHHHHHHHhcCccccCCCC-CCccchHHHHHHHHHHHHHHHHHHHhcCCCccc----
Confidence 234455667999999988888999999999876542 22221 246778999999999999999987543222110
Q ss_pred ccccccCCCcccc--cccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeecCeEEEEEEeeCCCCCc
Q 008205 351 KLSELSRGDMRFS--SVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLS 426 (574)
Q Consensus 351 ~~~~~~~~~~~c~--~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~~~~~~VG~w~~~~gl~ 426 (574)
.+.+..|. ...+|.+|..|+++|++++|+|+||+++||++|+|.++.++|++++.+++++||+|++..||+
T Consensus 298 -----~~~~~~C~~~~~~~w~~G~~i~~~lk~~~~~GlTG~i~Fd~~G~r~~~~l~Ii~l~~~g~~kvG~W~~~~g~~ 370 (371)
T cd06388 298 -----RGNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNIQFDHYGRRVNYTMDVFELKSNGPRKIGYWNDMDKLV 370 (371)
T ss_pred -----CCCCCCcCCCCCCCCcccHHHHHHHHhcCcCCCccceeECCCCCcccceEEEEEccCCCceEEEEEcCCCCcc
Confidence 11233563 356899999999999999999999999999999999999999999999999999999998874
No 7
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=6.1e-52 Score=400.12 Aligned_cols=452 Identities=22% Similarity=0.345 Sum_probs=354.4
Q ss_pred CCCCCeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEec--CCCCHHHHHHHHHH-hHhcCcEEEEc
Q 008205 27 STIPPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHD--TNYSRFLGMVEALT-LLENETVAIIG 103 (574)
Q Consensus 27 ~~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d--~~~~~~~a~~~~~~-l~~~~v~aiiG 103 (574)
+..+++++||+++... ..+.-|.-++..+|++.+ ..++.+.... .+.++.+.+-.+|+ +++..|.+|+-
T Consensus 30 ~~np~t~nig~Vlst~-----~~ee~F~~t~~hln~~~~---s~k~~~~aksv~~d~n~i~t~~~VC~~li~~~vyav~v 101 (993)
T KOG4440|consen 30 ACNPKTVNIGAVLSTR-----KHEEMFRETVNHLNKRHG---SWKIQLNAKSVTHDPNAIQTALSVCEDLISSQVYAVLV 101 (993)
T ss_pred CCCccceeeeeeeech-----hHHHHHHHHHHHhhcccc---ceEEEEccccccCCCcHHHHHHHHHHHHHhhheeEEEe
Confidence 4578899999998763 467788999999998763 2455553332 33466666667775 55668888774
Q ss_pred --C-CChH--HHHHHHHhhccCCccEEecccCCCCcCC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCC
Q 008205 104 --P-QFSV--IAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDH 177 (574)
Q Consensus 104 --p-~~s~--~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~ 177 (574)
| .+++ +-.+++-.++.+.||++.....+..+|+ +-++.|+|++|+..+|+....+++.+|.|++|.++.++|..
T Consensus 102 Sh~~Ts~d~f~p~~vSYT~gFY~iPV~G~~~Rda~fSdKnIh~sFlRtvpPyshqa~VwleMl~~~~y~~vi~l~s~d~~ 181 (993)
T KOG4440|consen 102 SHPPTSNDHFTPTPVSYTAGFYRIPVLGLTTRDAIFSDKNIHLSFLRTVPPYSHQASVWLEMLRVYSYNHVILLVSDDHE 181 (993)
T ss_pred cCCCCCCcccccccceeeccceeeeeeeeeehhhhhccCceeeeEeecCCCccchhHHHHHHHHHhhcceEEEEEccccc
Confidence 2 2222 2334555568889999999888999998 46899999999999999999999999999999999999988
Q ss_pred CcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEe
Q 008205 178 GRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVT 257 (574)
Q Consensus 178 g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~ 257 (574)
|.....+++..+++..-++.....+. +...++...|-+.|...+|++++..+.++|..|++.|.+++|++.+|+||++
T Consensus 182 gra~~~r~qt~~e~~~~~~e~v~~f~--p~~~~~t~~l~~~k~~~~rv~~~~as~dDA~~ifr~Ag~lnmTG~G~VWiV~ 259 (993)
T KOG4440|consen 182 GRAAQKRLQTLLEERESKAEKVLQFD--PGTKNVTALLMEAKELEARVIILSASEDDAATIFRAAGMLNMTGSGYVWIVG 259 (993)
T ss_pred chhHHhHHHHHHHHHhhhhhhheecC--cccchHHHHHhhhhhhhheeEEeecccchHHHHHHhhhhhcccCceEEEEEe
Confidence 88877777777775544443333444 4557789999999999999999999999999999999999999999999998
Q ss_pred CccccccCCCCcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 008205 258 DWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAF 337 (574)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~ 337 (574)
+..... -....|++|.++.+.. ...+..-|+|.+++.|++++
T Consensus 260 E~a~~~-----------nn~PdG~LGlqL~~~~---------------------------~~~~hirDsv~vlasAv~e~ 301 (993)
T KOG4440|consen 260 ERAISG-----------NNLPDGILGLQLINGK---------------------------NESAHIRDSVGVLASAVHEL 301 (993)
T ss_pred cccccc-----------CCCCCceeeeEeecCc---------------------------cccceehhhHHHHHHHHHHH
Confidence 753221 1357899999886432 12456789999999999999
Q ss_pred hhcCCCccccCCcccccccCCCcccccccccCchHHHHHHHHhcc-cccccccEEEcCCCCCCCCcEEEEEee-cCeEEE
Q 008205 338 FDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVN-MTGVTGPIKFTSDRDLINPAYEVINVI-GTGSRR 415 (574)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~-f~G~tG~v~Fd~~G~r~~~~~~i~~~~-~~~~~~ 415 (574)
++... +. .....||++...|..|+.|.+.++..+ ..|.||+|.||++|+|....|+|+|+. +...+.
T Consensus 302 ~~~e~-I~----------~~P~~c~d~~~~w~~g~~l~~~l~s~~~~~g~TgrV~Fnd~gdRi~a~YdiiN~hq~rk~Vg 370 (993)
T KOG4440|consen 302 LEKEN-IT----------DPPRGCVDNTNIWKTGPLLKRVLMSSKYADGVTGRVEFNDDGDRIFANYDIINLHQNRKLVG 370 (993)
T ss_pred Hhhcc-CC----------CCCCcccCccchhcccHHHHHHHhhhcccCCcceeEEEcCCCceeeccceeEehhhhhhhhh
Confidence 87532 21 133568889999999999999888754 579999999999999999999999995 455566
Q ss_pred EEEeeCCCCCcccCcccccCCCCCCCCCccccceeecCCCCccCCCceeecCCCCceEEeccCccccccceec-------
Q 008205 416 IGYWSNHSGLSVVPPEALYKEPSNRSASSQHLYSAVWPGQTTQKPRGWVFPNNGRHLRIGVPSQVIYPEFVAQ------- 488 (574)
Q Consensus 416 VG~w~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~------- 488 (574)
+|.++... . ..+...|+|||+.+.+|.++.+| ++|||.|+.+.||+...-.
T Consensus 371 ~~~yd~~r---~----------------~~nd~~IiWpGg~~~KP~gi~~p---thLrivTi~~~PFVYv~p~~sd~~c~ 428 (993)
T KOG4440|consen 371 VGIYDGTR---V----------------IPNDRKIIWPGGETEKPRGIQMP---THLRIVTIHQEPFVYVKPTLSDGTCK 428 (993)
T ss_pred hcccccee---e----------------ccCCceeecCCCCcCCCcccccc---ceeEEEEeccCCeEEEecCCCCcchh
Confidence 66665432 1 12235899999999999999987 6799999888887543210
Q ss_pred --------------cCC-------------CcccceeeHHHHHHHHHhCCCCcCeEEEECCCCC------------CC-C
Q 008205 489 --------------GKG-------------TDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGH------------NS-P 528 (574)
Q Consensus 489 --------------~~g-------------~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~------------~~-~ 528 (574)
+.| ..||.|||||||-++++.++|+ |+..++.||+ .+ .
T Consensus 429 eef~~~~d~~~k~~c~gpn~s~p~s~~~t~~fCC~G~cIDLLi~Ls~~~Nft--yd~~l~~dg~fg~~~~vnnsseT~~k 506 (993)
T KOG4440|consen 429 EEFTVNGDPVKKVICTGPNDSSPGSPRHTVPFCCYGFCIDLLIKLSRTMNFT--YDVHLVADGKFGTQERVNNSSETNKK 506 (993)
T ss_pred hhccccCCcccceeecCCCCCCCCCcccCcchhhhHHHHHHHHHHHHhhcce--EEEEEeecccccceeeeecccccccc
Confidence 011 2389999999999999999999 9999999987 23 3
Q ss_pred ChHHHHHHhhhcccccccccccceeeeEEEEeeCc----eeeec
Q 008205 529 KRFDLLRLVSEEVSMKRKKIFFNLVILFAILANGG----FLVPC 568 (574)
Q Consensus 529 ~~~gli~~l~~~~~d~~~~~~~~~~~~~~~~~~~~----~~v~f 568 (574)
+|+||||||..++|||+ |+++||++||+ |+.||
T Consensus 507 ew~G~iGEL~~~~ADMi-------vaplTINpERa~yieFskPf 543 (993)
T KOG4440|consen 507 EWNGMIGELLSGQADMI-------VAPLTINPERAQYIEFSKPF 543 (993)
T ss_pred eehhhhhhhhCCccceE-------eeceeeChhhhhheeccCcc
Confidence 99999999999999999 99999999998 55555
No 8
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=100.00 E-value=9.6e-51 Score=422.18 Aligned_cols=380 Identities=19% Similarity=0.327 Sum_probs=310.6
Q ss_pred CCCCCeEEEEEEeccCC-----------------ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHH
Q 008205 27 STIPPVLNIGAVFALNS-----------------TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVE 89 (574)
Q Consensus 27 ~~~~~~i~IG~l~~~~~-----------------~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~ 89 (574)
...+++|.||++||.+. ..|.....|+.+|+|+||+++.+|||++|+++++|+|+++..|++.
T Consensus 4 ~~~~Gd~~igglfpvh~~~~~~~~~~~~c~~~~~~~g~~~~~Am~~Aie~IN~~~~lLp~~~Lg~~i~Dtc~~~~~a~~~ 83 (472)
T cd06374 4 ARMDGDIIIGALFSVHHQPAAEKVPERKCGEIREQYGIQRVEAMFHTLDRINADPVLLPNITLGCEIRDSCWHSSVALEQ 83 (472)
T ss_pred EEecCCEEEEEEEecccccccCCCCCCCccccCcchhHHHHHHHHHHHHHHhCCcccCCCceeccEEEEcCCCchHHHHH
Confidence 45789999999999983 1355678999999999999999999999999999999999999999
Q ss_pred HHHhHh--------------------------cCcEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCCC-CCCce
Q 008205 90 ALTLLE--------------------------NETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSL-QYPFF 142 (574)
Q Consensus 90 ~~~l~~--------------------------~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~-~~~~~ 142 (574)
+.+++. .+|.|||||.+|..+.++++++..++||+|+++++++.++++ .|||+
T Consensus 84 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~aiiGp~~S~~~~ava~~~~~~~iP~Is~~ats~~ls~~~~~p~~ 163 (472)
T cd06374 84 SIEFIRDSLISIRDEKDGVNPDGQSPGPNKSKKPIVGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSIDLSDKTLFKYF 163 (472)
T ss_pred HHHHHhhcccccccccccccccCCCcccccCCCCeEEEECCCcchHHHHHHHHhhhhcccccccccCchhhcccccCCce
Confidence 999885 289999999999999999999999999999999999989874 79999
Q ss_pred EEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC-
Q 008205 143 VRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM- 221 (574)
Q Consensus 143 ~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~- 221 (574)
||+.|++..++.++++++++|+|++|++||++++||....+.+++.+++.|+||+....++......++..++++||+.
T Consensus 164 fRt~p~d~~~~~al~~l~~~~~W~~Vaii~~~~~yg~~~~~~~~~~~~~~gi~i~~~~~i~~~~~~~d~~~~l~~lk~~~ 243 (472)
T cd06374 164 LRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMEAFKELAAHEGLCIAHSDKIYSNAGEQSFDRLLRKLRSRL 243 (472)
T ss_pred EEcCCChHHHHHHHHHHHHHCCCcEEEEEEecchHHHHHHHHHHHHHHHCCeeEEEEEEecCCCchHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999887775445678899999999964
Q ss_pred -CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCcCChhhhhhccceEEEEEecCCChHHHHHH--
Q 008205 222 -MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFV-- 298 (574)
Q Consensus 222 -~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~-- 298 (574)
++++|++++....+..++++|+++||. .+++||.++.|....... ....+...|.+++.+..+..+.+++|+
T Consensus 244 ~da~vvv~~~~~~~~~~~l~~a~~~g~~-~~~~wi~s~~~~~~~~~~----~~~~~~~~G~l~~~~~~~~~~~F~~~l~~ 318 (472)
T cd06374 244 PKARVVVCFCEGMTVRGLLMAMRRLGVG-GEFQLIGSDGWADRDDVV----EGYEEEAEGGITIKLQSPEVPSFDDYYLK 318 (472)
T ss_pred CCcEEEEEEechHHHHHHHHHHHHhcCC-CceEEEEecccccchHhh----hcchhhhheeEEEEecCCCCccHHHHHHh
Confidence 577788778888899999999999985 568999998775432111 123456789999988877666666644
Q ss_pred -------------HHHHHhhc---------------cCCCCCCC----CCChhHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 008205 299 -------------TRWRHLTR---------------RNTLNGPI----GLNSFGLYAYDTLWLLAHAIGAFFDQGGNISF 346 (574)
Q Consensus 299 -------------~~~~~~~~---------------~~~~~~~~----~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~ 346 (574)
+.|+..+. .|++.+.. ....+++++||||+++|+||++++.++...
T Consensus 319 l~~~~~~~~~~~~~~w~~~f~c~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~vyDAVyaiA~ALh~~~~~~~~~-- 396 (472)
T cd06374 319 LRPETNTRNPWFREFWQHRFQCRLPGHPQENPNYIKICTGNESLDEQYVQDSKMGFVINAIYAMAHGLHNMHQDLCPG-- 396 (472)
T ss_pred CCcccCCCChHHHHHHHHhcCCCcCCccCcCCccCCCCCCcccccccccccceeHHHHHHHHHHHHHHHHHHHhhCCC--
Confidence 45655442 01111111 112456689999999999999998654211
Q ss_pred cCCcccccccCCCcccccccccCchHHHHHHHHhcccccccc-cEEEcCCCCCCCCcEEEEEeec-----CeEEEEEEee
Q 008205 347 SEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTG-PIKFTSDRDLINPAYEVINVIG-----TGSRRIGYWS 420 (574)
Q Consensus 347 ~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG-~v~Fd~~G~r~~~~~~i~~~~~-----~~~~~VG~w~ 420 (574)
....|+..... +|..|+++|++++|+|++| +|.||++|++. ..|+|+|++. .++++||.|+
T Consensus 397 -----------~~~~c~~~~~~-~~~~l~~~l~~v~F~g~tG~~v~Fd~~G~~~-~~ydI~n~~~~~~~~~~~~~VG~w~ 463 (472)
T cd06374 397 -----------HVGLCDAMKPI-DGRKLLEYLLKTSFSGVSGEEVYFDENGDSP-GRYDIMNLQYTEDLRFDYINVGSWH 463 (472)
T ss_pred -----------CCCCCcCCCCC-CHHHHHHHHHhCcccCCCCCeEEEcCCCCCC-CceEEEEEEECCCCCEEEEEEEEEe
Confidence 11235554333 6999999999999999999 69999999986 5899999994 3579999997
Q ss_pred CCCCCcc
Q 008205 421 NHSGLSV 427 (574)
Q Consensus 421 ~~~gl~~ 427 (574)
+ .+|.+
T Consensus 464 ~-~~l~~ 469 (472)
T cd06374 464 E-GDLGI 469 (472)
T ss_pred C-Ccccc
Confidence 4 46655
No 9
>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a
Probab=100.00 E-value=1.7e-50 Score=406.87 Aligned_cols=369 Identities=22% Similarity=0.317 Sum_probs=293.2
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEE--EEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKL--TVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~--~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~ 111 (574)
+||+||+.++. ..+.||++|++++|++..+||+++|.+ ...|++ |++.+.+++|+++++||.|||||.++..+.
T Consensus 1 ~IGaif~~~s~---~~~~Af~~Ai~~iN~~~~~l~~~~l~~~~~~~d~~-d~f~a~~~~c~l~~~gv~ai~Gp~~~~~~~ 76 (400)
T cd06391 1 HIGAIFDESAK---KDDEVFRMAVADLNQNNEILQTEKITVSVTFVDGN-NPFQAVQEACELMNQGILALVSSIGCTSAG 76 (400)
T ss_pred CcceeeccCCc---hHHHHHHHHHHHhcCCccccCCCcceEEEEEeeCC-CcHHHHHHHHHHHhCCeEEEECCCcchHHH
Confidence 58999999874 345799999999999999999995555 778884 999999999999999999999998888889
Q ss_pred HHHHhhccCCccEEec----ccCC-----CCcCC--CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcc
Q 008205 112 LVSHIANEFQVPLLSF----AATD-----PSLSS--LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRN 180 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~----~~~~-----~~ls~--~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~ 180 (574)
.++++|+.++||+|++ ++++ +.+++ .+||+++| |+ ..+..|+++++++|+|++++++| ++++|..
T Consensus 77 ~v~~~~~~~~vP~i~~~~~~~~t~~~~~~~~~~~~~~~y~~~~r--p~-~~~~~ai~~li~~f~W~~v~i~~-d~~~~~~ 152 (400)
T cd06391 77 SLQSLADAMHIPHLFIQRSTAGTPRSSCGLTRSNRNDDYTLSVR--PP-VYLNDVILRVVTEYAWQKFIIFY-DTDYDIR 152 (400)
T ss_pred HHHHHhccCcCCeEEeecccccCccccCCCCCCCCcccceEEec--Ch-HHHHHHHHHHHHHcCCcEEEEEE-eCCccHH
Confidence 9999999999999974 3322 33443 35666776 54 67889999999999999999876 5667888
Q ss_pred hHHHHHHHHhhcCcEEEEEeecCCCCC---hhhHHH-HHHHhhc--CCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEE
Q 008205 181 GIAALGDKLAEKRCRLSHKVPLSPKGS---RNQIID-TLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMESGYVW 254 (574)
Q Consensus 181 ~~~~l~~~~~~~g~~v~~~~~~~~~~~---~~~~~~-~l~~ik~--~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~ 254 (574)
.++.+.+.+++.++||.... +..... ...++. .+++|++ ++.++||++|+++.+..+|++|.++||++.+|||
T Consensus 153 ~l~~l~~~~~~~~i~I~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~rviVl~~~~~~~~~ll~~a~~~gm~~~~y~w 231 (400)
T cd06391 153 GIQEFLDKVSQQGMDVALQK-VENNINKMITGLFRTMRIEELNRYRDTLRRAILVMNPATAKSFITEVVETNLVAFDCHW 231 (400)
T ss_pred HHHHHHHHHHHcCCeEEEEe-cCcchhhhhHHHHHHHHHHHHHhhcccccEEEEECCcHHHHHHHHHHHHcCCCCCCeEE
Confidence 99999999999999998744 221111 012222 4556665 6779999999999999999999999999999999
Q ss_pred EEeCccccccCCCCcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhcc--C-CCCC-CCCCChhHHHHHHHHHHH
Q 008205 255 IVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRR--N-TLNG-PIGLNSFGLYAYDTLWLL 330 (574)
Q Consensus 255 i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~--~-~~~~-~~~~~~~~~~~yDav~~~ 330 (574)
|++++.....|+.+ .....+.|+.+++++.+.+....+|..+|+.++.. + +..+ ...+..+++++||||+++
T Consensus 232 i~t~~~~~~~dl~~----~~~~~~~~v~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~alayDaV~~~ 307 (400)
T cd06391 232 IIINEEISDMDVQE----LVRRSIGRLTIIRQTFPLPQNISQRCFRGNHRISSSLCDPKDPFAQMMEISNLYIYDTVLLL 307 (400)
T ss_pred EEeCccccccccch----HHhcccceEEEeccCCchHHHHHHHHHHHhhhccccccCccccccccccchhhHHHHHHHHH
Confidence 99999888777632 22334567777888777767778888888776531 1 1111 113568899999999999
Q ss_pred HHHHHHHhhcCCCccccCCcccccccCCCccccc--ccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEe
Q 008205 331 AHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSS--VSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINV 408 (574)
Q Consensus 331 a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~--~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~ 408 (574)
|.|++++.+.+... ....+.|.. ..+|..|..|+++|++++|+|+||+|+|+++|+|.++.|+|+|+
T Consensus 308 A~A~~~l~~~~~~~-----------~~~~~~c~~~~~~~w~~G~~ll~~i~~~~f~GlTG~i~f~~~g~r~~~~~dIin~ 376 (400)
T cd06391 308 ANAFHKKLEDRKWH-----------SMASLSCIRKNSKPWQGGRSMLETIKKGGVSGLTGELEFNENGGNPNVHFEILGT 376 (400)
T ss_pred HHHHHHHHhhcccc-----------CCCCcccccCCCCCCCChHHHHHHHHhcCcccceeceEECCCCCccCCceEEEEe
Confidence 99999875433221 123445653 45899999999999999999999999999999999999999999
Q ss_pred e-----cCeEEEEEEeeCCCCCc
Q 008205 409 I-----GTGSRRIGYWSNHSGLS 426 (574)
Q Consensus 409 ~-----~~~~~~VG~w~~~~gl~ 426 (574)
+ ++|+++||+|++..||+
T Consensus 377 ~~~~~~~~g~rkiG~Ws~~~gl~ 399 (400)
T cd06391 377 NYGEDLGRGVRKLGCWNPITGLN 399 (400)
T ss_pred eccccCCCcceEEEEEcCCcCCC
Confidence 6 78999999999998863
No 10
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=100.00 E-value=2.5e-50 Score=404.50 Aligned_cols=363 Identities=17% Similarity=0.250 Sum_probs=299.2
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC-CCHHHHHHHHHHhHhcCcEEEEcCCChHHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTN-YSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~-~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 112 (574)
+||+||+..+ ...+.||++|++.+|.. +.+|.+.+.... .|++.+.+++|+++++||.||+||.+|..+.+
T Consensus 1 ~ig~if~~~~---~~~~~af~~a~~~~n~~-----~~~l~~~~~~~~~~dsf~~~~~~C~~~~~GV~AI~Gp~ss~~~~~ 72 (370)
T cd06389 1 QIGGLFPRGA---DQEYSAFRVGMVQFSTS-----EFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNT 72 (370)
T ss_pred CCceeecCCc---hHHHHHHHHHHHHhccc-----CceeeeeeEEecccchHHHHHHHHHHhhcCcEEEEecCCHHHHHH
Confidence 4899998765 35789999999999986 367787666554 49999999999999999999999999999999
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhc
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEK 192 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~ 192 (574)
++++|+.++||+|++.++. +..++|.+++.|+ ...++++++++|+|++|++||+ +++|...++.+.+.+++.
T Consensus 73 v~~i~~~~~IP~I~~~~~~----~~~~~f~~~~~p~---~~~ai~d~i~~~~wk~vailYd-sd~gl~~lq~l~~~~~~~ 144 (370)
T cd06389 73 ITSFCGTLHVSFITPSFPT----DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLYD-SDRGLSTLQAVLDSAAEK 144 (370)
T ss_pred HHHhhccCCCCeeeecCCC----CCCCceEEEecch---hhhHHHHHHHhcCCcEEEEEec-CchHHHHHHHHHHhhccC
Confidence 9999999999999975442 3357889999998 5799999999999999999997 569999999999999999
Q ss_pred CcEEEEEe--ecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCcC
Q 008205 193 RCRLSHKV--PLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQL 270 (574)
Q Consensus 193 g~~v~~~~--~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~~ 270 (574)
|+.|.... .+.......+++.+|++||..++++||++|+++.+..+++||.++||+.++||||+++......+.
T Consensus 145 g~~V~~~~~~~i~~~~~~~d~~~~L~~ik~~~~~~Iil~~~~~~~~~il~qa~~~gm~~~~y~~il~~~~~~~~~l---- 220 (370)
T cd06389 145 KWQVTAINVGNINNDRKDEAYRSLFQDLENKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL---- 220 (370)
T ss_pred CceEEEEEeecCCCccchHHHHHHHHHhccccceEEEEECCHHHHHHHHHHHHHhCccccceEEEEccCCccccch----
Confidence 98776433 222223456899999999999999999999999999999999999999999999998864433222
Q ss_pred ChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhc-cCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 008205 271 HSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTR-RNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSED 349 (574)
Q Consensus 271 ~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~ 349 (574)
..+.....++++++..++..+..++|.++|++... .+++.....+...++++||||++++.|++++.+.+..+..
T Consensus 221 -~~~~~~~~nitg~~~~~~~~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~aAl~yDAV~v~a~A~~~l~~~~~~~~~--- 296 (370)
T cd06389 221 -SKIQFGGANVSGFQIVDYDDPLVSKFIQRWSTLEEKEYPGAHTKTIKYTSALTYDAVQVMTEAFRNLRKQRIEISR--- 296 (370)
T ss_pred -hhhccCCcceEEEEEecCCCchHHHHHHHHHhcCccccCCCCCcCcchHHHHHHHHHHHHHHHHHHHHHcCCCccc---
Confidence 12223566789999988888999999999986432 2223233456788999999999999999998554332211
Q ss_pred cccccccCCCccccc--ccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeecCeEEEEEEeeCCCCCc
Q 008205 350 SKLSELSRGDMRFSS--VSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLS 426 (574)
Q Consensus 350 ~~~~~~~~~~~~c~~--~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~~~~~~VG~w~~~~gl~ 426 (574)
.+....|.. ..+|.+|..|+++|++++|+|+||+++||++|+|.++.++|++++.+++++||+|++..||+
T Consensus 297 ------~~~~~~C~~~~~~~w~~G~~i~~~l~~~~~~GlTG~i~Fd~~G~r~~~~~~ii~l~~~g~~kvG~W~~~~~~~ 369 (370)
T cd06389 297 ------RGNAGDCLANPAVPWGQGVEIERALKQVQVEGLTGNIKFDQNGKRINYTINVMELKSNGPRKIGYWSEVDKMV 369 (370)
T ss_pred ------CCCCCCcCCCCCCCCCCcHHHHHHHHhcccCccccceEeCCCCccccceEEEEEecCCcceEEEEEcCCCCcc
Confidence 112335643 56899999999999999999999999999999999999999999999999999999988864
No 11
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=100.00 E-value=6.3e-50 Score=415.73 Aligned_cols=376 Identities=21% Similarity=0.344 Sum_probs=307.7
Q ss_pred CeEEEEEEeccCC-------------ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHh--
Q 008205 31 PVLNIGAVFALNS-------------TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLE-- 95 (574)
Q Consensus 31 ~~i~IG~l~~~~~-------------~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~-- 95 (574)
+++.||++||.+. ..|.....|+++|+|+||+++++|||++|+++++|+|+++..|++.+.+++.
T Consensus 1 Gd~~igglfp~h~~~~~~~~c~~~~~~~G~~~~~a~~~Aie~IN~~~~iLpg~~L~~~i~D~~~~~~~a~~~a~~li~~~ 80 (452)
T cd06362 1 GDIILGGLFPVHSKGTGGEPCGEIKEQRGIQRLEAMLFALDEINNDPTLLPGITLGAHILDTCSRDTYALEQSLEFVRAS 80 (452)
T ss_pred CCeEEEEEEecccCCCCCCCCcCccccchHHHHHHHHHHHHHhhCCCCCCCCCeeCcEEEEeCCCchHHHHHHHHHHhhh
Confidence 5799999999983 2456678999999999999999999999999999999999999988888874
Q ss_pred ---------------------cCcEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCC-CCCCceEEecCChHHHH
Q 008205 96 ---------------------NETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQM 153 (574)
Q Consensus 96 ---------------------~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~ 153 (574)
.+|.+||||.+|..+.++++++..++||+|+++++++.+++ ..|||+||+.|++..++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~v~aviG~~~S~~~~av~~~~~~~~ip~Is~~sts~~ls~~~~~~~~fR~~p~d~~~~ 160 (452)
T cd06362 81 LTKIDDCVYCDGGSPPPNNSPKPVAGVIGASYSSVSIQVANLLRLFKIPQISYASTSPELSDKTRYDYFSRTVPPDSFQA 160 (452)
T ss_pred hhcCCccccccCCCcccccCCCCeEEEECCCCCchHHHHHHHhccccCcccccccCchhhccccccCCEEEecCChHHHH
Confidence 38999999999999999999999999999999999998887 47999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc-CCCeEEEEEeCh
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-MMSRILILHTYD 232 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~-~~~~viil~~~~ 232 (574)
.++++++++|+|++|++||++++||....+.+.+.+++.|++|.....++...+..++..++++|++ .++++||+.+..
T Consensus 161 ~a~~~~l~~~~w~~vaii~~~~~~G~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~d~~~~l~~l~~~~~a~viil~~~~ 240 (452)
T cd06362 161 QAMVDIVKAFNWTYVSTVASEGNYGEKGIEAFEKLAAERGICIAGSEKIPSSATEEEFDNIIRKLLSKPNARVVVLFCRE 240 (452)
T ss_pred HHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHHHHHHCCeeEEEEEEcCCCCCHHHHHHHHHHHhhcCCCeEEEEEcCh
Confidence 9999999999999999999999999999999999999999999988777654567899999999987 579999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCcCChhhhhhccceEEEEEecCCChHHHHHH--------------
Q 008205 233 IWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFV-------------- 298 (574)
Q Consensus 233 ~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~-------------- 298 (574)
.++..++++|+++||. .++.||.++.|....... ........|++++.+.....+.++.|+
T Consensus 241 ~~~~~~~~~a~~~g~~-~~~~~i~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~i~~f~~~l~~l~~~~~~~~~~~ 315 (452)
T cd06362 241 DDIRGLLAAAKRLNAE-GHFQWIASDGWGARNSVV----EGLEDVAEGAITIELQSAEVPGFDEYFLSLTPENNSRNPWF 315 (452)
T ss_pred HHHHHHHHHHHHcCCc-CceEEEEeccccccchhh----cccccccceEEEEEecccccccHHHHhhhCCcCcCCCChHH
Confidence 9999999999999997 568999998765432211 123356788888877665544444433
Q ss_pred -HHHHHhhc-------------cCCCCCC----CCCChhHHHHHHHHHHHHHHHHHHhhcCCCccccCCcccccccCCCc
Q 008205 299 -TRWRHLTR-------------RNTLNGP----IGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDM 360 (574)
Q Consensus 299 -~~~~~~~~-------------~~~~~~~----~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (574)
+.|+..+. .|+.... .....+++++||||+++|+||+++++++... ...
T Consensus 316 ~~~w~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~vyDAV~a~A~AL~~~l~~~~~~-------------~~~ 382 (452)
T cd06362 316 REFWEQKFNCKLTGNGSTKDNTCCTERILLLSNYEQESKVQFVIDAVYAMAHALHNMHRDLCPG-------------TTG 382 (452)
T ss_pred HHHHHHhcCCCcCCCCccccCCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHhhCCC-------------CCC
Confidence 34444332 0111110 1224478899999999999999998764321 112
Q ss_pred ccccccccCchHHHHHHHHhcccccccc-cEEEcCCCCCCCCcEEEEEeec----CeEEEEEEeeCCCCCc
Q 008205 361 RFSSVSIFNGGKMLLDNILQVNMTGVTG-PIKFTSDRDLINPAYEVINVIG----TGSRRIGYWSNHSGLS 426 (574)
Q Consensus 361 ~c~~~~~~~~g~~l~~~l~~~~f~G~tG-~v~Fd~~G~r~~~~~~i~~~~~----~~~~~VG~w~~~~gl~ 426 (574)
.|+... |.+|..|+++|++++|+|++| +|.||++|+|. ..|+|++++. .++++||.|+++.||+
T Consensus 383 ~c~~~~-~~~~~~l~~~l~~v~f~g~tg~~v~Fd~~G~~~-~~y~I~~~~~~~~~~~~~~VG~w~~~~~~~ 451 (452)
T cd06362 383 LCDAMK-PIDGRKLLFYLRNVSFSGLAGGPVRFDANGDGP-GRYDIFNYQRTNGKYDYVKVGSWKGELSLN 451 (452)
T ss_pred CCcCcc-CCCHHHHHHHHHhCCcCCCCCceEEECCCCCCC-CceEEEEEEEcCCceEEEEEEEEecccccC
Confidence 365433 446999999999999999998 79999999986 5899999983 3589999999877653
No 12
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=100.00 E-value=1.9e-49 Score=408.79 Aligned_cols=369 Identities=22% Similarity=0.377 Sum_probs=306.4
Q ss_pred CeEEEEEEeccCC-------------ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHh--
Q 008205 31 PVLNIGAVFALNS-------------TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLE-- 95 (574)
Q Consensus 31 ~~i~IG~l~~~~~-------------~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~-- 95 (574)
++|.||++||.+. ..|.+...|+.+|||+||+++++|||++|++.++|+|+++..+++.+.+++.
T Consensus 1 Gd~~igglFp~h~~~~~~~~C~~~~~~~g~~~~~Am~~AIe~IN~~~~lLp~~~Lg~~i~Dtc~~~~~a~~~~~~~i~~~ 80 (458)
T cd06375 1 GDLVLGGLFPVHEKGEGTEECGRINEDRGIQRLEAMLFAIDRINNDPRILPGIKLGVHILDTCSRDTYALEQSLEFVRAS 80 (458)
T ss_pred CCEEEEEEEEeeeCCCCCCCCcCccccchHHHHHHHHHHHHHHhCCCCCCCCceeccEEEecCCCcHHHHHHHHHHHhhh
Confidence 5799999999982 2467889999999999999999999999999999999999999988877772
Q ss_pred -----------------------cCcEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCC-CCCCceEEecCChHH
Q 008205 96 -----------------------NETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLY 151 (574)
Q Consensus 96 -----------------------~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~ 151 (574)
.+|.|||||.+|..+.+++++++.++||+|+++++++.|++ .+|||+||+.|++..
T Consensus 81 ~~~~~~~~~~C~~~~~~~~~~~~~~V~aVIG~~~S~~s~ava~~~~~~~IP~Is~~sts~~Ls~~~~~~~ffRt~psd~~ 160 (458)
T cd06375 81 LTKVDTSEYECPDGSYAVQENSPLAIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFY 160 (458)
T ss_pred hhcccccccccccCCccccccCCCCeEEEEcCCCchHHHHHHHHhhhccccceeeccCChhhcccccCCCeEEecCCcHH
Confidence 37999999999999999999999999999999999999987 479999999999999
Q ss_pred HHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc-CCCeEEEEEe
Q 008205 152 QMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-MMSRILILHT 230 (574)
Q Consensus 152 ~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~-~~~~viil~~ 230 (574)
++.|+++++++|+|++|++||++++||...++.+++.+++.|+||+..+.++......++..+++++++ .++++||+++
T Consensus 161 qa~ai~~ll~~~~W~~Vaii~~~~~yG~~~~~~~~~~~~~~gi~i~~~~~i~~~~~~~d~~~~l~~l~~~~~a~vVvl~~ 240 (458)
T cd06375 161 QAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATSEKVGRSADRKSYDSVIRKLLQKPNARVVVLFT 240 (458)
T ss_pred HHHHHHHHHHHCCCeEEEEEEeCchHHHHHHHHHHHHHHHCCeeEEEEEEecCCCCHHHHHHHHHHHhccCCCEEEEEec
Confidence 999999999999999999999999999999999999999999999988878655566889999999875 6999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCcCChhhhhhccceEEEEEecCCChHHHHHHH-----------
Q 008205 231 YDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVT----------- 299 (574)
Q Consensus 231 ~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~----------- 299 (574)
...++..++++|.++|+. +.||.++.|....... ........|++++.+.....+.+++|++
T Consensus 241 ~~~~~~~ll~~a~~~g~~---~~wigs~~~~~~~~~~----~~~~~~~~G~i~~~~~~~~i~~f~~yl~~l~p~~~~~n~ 313 (458)
T cd06375 241 RSEDARELLAAAKRLNAS---FTWVASDGWGAQESIV----KGSEDVAEGAITIELASHPIPDFDRYFQSLTPETNTRNP 313 (458)
T ss_pred ChHHHHHHHHHHHHcCCc---EEEEEeccccccchhh----hccchhhceEEEEEeccccchhHHHHHHhCCcCcCCCCc
Confidence 999999999999999975 8899998875332111 1123567899999998877777776664
Q ss_pred ----HHHHhhc-----------cCCCCCCC------CCChhHHHHHHHHHHHHHHHHHHhhcCCCccccCCcccccccCC
Q 008205 300 ----RWRHLTR-----------RNTLNGPI------GLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRG 358 (574)
Q Consensus 300 ----~~~~~~~-----------~~~~~~~~------~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~ 358 (574)
.|+..++ .|...+.. .......++||||+++|+|||++++++.. .+
T Consensus 314 w~~e~w~~~f~c~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~v~~AVyA~AhaLh~~l~~~c~-------------~~ 380 (458)
T cd06375 314 WFKDFWEQKFQCSLQNRDCANTTTNDKERLLDKVNYEQESKIMFVVNAVYAMAHALHNMQRDLCP-------------NT 380 (458)
T ss_pred HHHHHHHHHcCCCCCCCCccCCCCCchhcccccCcccccchHHHHHHHHHHHHHHHHHHHHhcCC-------------CC
Confidence 4555542 12211111 12346788999999999999999975432 11
Q ss_pred CcccccccccCchHHHH-HHHHhcccc-----cccc-cEEEcCCCCCCCCcEEEEEeec--Ce----EEEEEEeeC
Q 008205 359 DMRFSSVSIFNGGKMLL-DNILQVNMT-----GVTG-PIKFTSDRDLINPAYEVINVIG--TG----SRRIGYWSN 421 (574)
Q Consensus 359 ~~~c~~~~~~~~g~~l~-~~l~~~~f~-----G~tG-~v~Fd~~G~r~~~~~~i~~~~~--~~----~~~VG~w~~ 421 (574)
...|+....+ ++++|+ ++|++++|. |.+| .|.||++|+. ...|+|+|++. ++ +++||.|+.
T Consensus 381 ~~~c~~~~~~-~~~~l~~~~L~~v~F~~~~~~~~~g~~v~Fd~nGd~-~~~YdI~n~q~~~~~~~~~~~~VG~w~~ 454 (458)
T cd06375 381 TKLCDAMKPL-DGKKLYKEYLLNVSFTAPFRPDLADSEVKFDSQGDG-LGRYNIFNYQRTGNSYGYRYVGVGAWAN 454 (458)
T ss_pred CCCCCCCCCC-CHHHHHHHHHHhccccccccCCCCCCeeEECCCCCC-CcceEEEEEEEcCCCCcEEEEEEEEEec
Confidence 2347665556 488999 599999999 9998 5999999995 57899999993 32 689999964
No 13
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=100.00 E-value=1.4e-49 Score=411.50 Aligned_cols=370 Identities=18% Similarity=0.267 Sum_probs=301.8
Q ss_pred CeEEEEEEeccCC----------------------ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHH
Q 008205 31 PVLNIGAVFALNS----------------------TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMV 88 (574)
Q Consensus 31 ~~i~IG~l~~~~~----------------------~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~ 88 (574)
++|.||++||.+. ..|.+...|+.+|+++||+++.+|||++|++.++|+|+++..+++
T Consensus 1 Gdi~igglf~vh~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Am~~Ai~~IN~~~~lLp~~~Lg~~i~dtc~~~~~a~~ 80 (469)
T cd06365 1 GDLVIGGFFPLYTLSGPFETDDWHPFSADLDFRLLLKNYQHVLALLFAIEEINKNPHLLPNISLGFHIYNVLHSDRKALE 80 (469)
T ss_pred CCeeEeceEEEEEeccccccccccCccccccccccchhhHHHHHHHHHHHHHhCCCCCCCCceEEEEEECCCCccHHHHH
Confidence 4689999999972 125567899999999999999999999999999999999999999
Q ss_pred HHHHhHh--------------cCcEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCC-CCCCceEEecCChHHHH
Q 008205 89 EALTLLE--------------NETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQM 153 (574)
Q Consensus 89 ~~~~l~~--------------~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~ 153 (574)
.+.+++. .+++|||||.+|..+.+++++++.++||+|+++++++.+++ .+||||||+.|++..++
T Consensus 81 ~~~~~~~~~~~~~~~~~C~~~~~vvavIG~~~S~~s~~va~i~~~~~IP~Is~~sts~~lsd~~~yp~ffRt~psd~~q~ 160 (469)
T cd06365 81 SSLMWLSGEGETIPNYSCRRQRKSVAVIGGPSWALSATIATLLGLYKFPQLTYGPFDPLLSDRVQFPSLYQMAPKDTSLP 160 (469)
T ss_pred HHHHHHhCCCcccCCccCCCCCceEEEEcCCccHHHHHHHHHhhhhcccceeeccCCccccchhhCCcceEecCCchhHH
Confidence 9988885 37999999999999999999999999999999999999987 57899999999999999
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCCh--hhHHHHHHHhhcCCCeEEEEEeC
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSR--NQIIDTLLTVSSMMSRILILHTY 231 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~--~~~~~~l~~ik~~~~~viil~~~ 231 (574)
.|+++++++|+|++|++|+.+++||....+.+.+.+++.|+||+..+.++..... .++..++++|+++++|+||+++.
T Consensus 161 ~ai~~li~~f~W~~Vaiv~~d~~yg~~~~~~~~~~~~~~gi~I~~~~~i~~~~~~~~~~~~~~l~~i~~~~arvIvl~~~ 240 (469)
T cd06365 161 LGMVSLMLHFSWTWVGLVISDDDRGEQFLSDLREEMQRNGICLAFVEKIPVNMQLYLTRAEKYYNQIMTSSAKVIIIYGD 240 (469)
T ss_pred HHHHHHHHhcCCeEEEEEEecChhHHHHHHHHHHHHHHCCeEEEEEEEecCCchhhHHHHHHHHHHhhcCCCeEEEEEcC
Confidence 9999999999999999999999999999999999999999999998878754322 47889999999999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCcCChhhhhhccceEEEEEecCCChHHHHHHHH-----------
Q 008205 232 DIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTR----------- 300 (574)
Q Consensus 232 ~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~----------- 300 (574)
.+.+..++.++.+.+. .+++||.++.|....... ....+.+.|++++.+..+..+.+++|++.
T Consensus 241 ~~~~~~l~~~~~~~~~--~~~~wi~s~~w~~~~~~~----~~~~~~~~G~lg~~~~~~~~~~f~~fl~~l~~~~~~~npw 314 (469)
T cd06365 241 TDSLLEVSFRLWQYLL--IGKVWITTSQWDVTTSPK----DFTLNSFHGTLIFSHHHSEIPGFKDFLQTVNPSKYPEDIF 314 (469)
T ss_pred cHHHHHHHHHHHHhcc--CceEEEeecccccccccc----ccccceeeEEEEEEeccCcCcchHHHhhccCcccCCCccH
Confidence 9888777666666543 569999998775432221 22346789999999988877777776653
Q ss_pred ----HHHhhc------------cCCCCCCCC----------CChhHHHHHHHHHHHHHHHHHHhhcCCCccccCCccccc
Q 008205 301 ----WRHLTR------------RNTLNGPIG----------LNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSE 354 (574)
Q Consensus 301 ----~~~~~~------------~~~~~~~~~----------~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~ 354 (574)
|+..++ .|+...... ....+..+||||+++|+|||++++++...
T Consensus 315 ~~efwe~~f~c~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~v~dAVya~AhALh~~l~c~~~~---------- 384 (469)
T cd06365 315 LEKLWWIYFNCSLSKSSCKTLKNCLSNASLEWLPLHYFDMAMSEESYNVYNAVYAVAHALHEMLLQQVET---------- 384 (469)
T ss_pred HHhhHhHhcCcccCcCCccccCCCCCCccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHhhccC----------
Confidence 444432 132221111 12356789999999999999999875421
Q ss_pred ccCCCcccccccccCchHHHHHHHHhccccccccc-EEEcCCCCCCCCcEEEEEeec--C---eEEEEEEeeC
Q 008205 355 LSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGP-IKFTSDRDLINPAYEVINVIG--T---GSRRIGYWSN 421 (574)
Q Consensus 355 ~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~-v~Fd~~G~r~~~~~~i~~~~~--~---~~~~VG~w~~ 421 (574)
....+|.. ... ++.+|+++|++++|.|.+|. |.||++|++ ...|+|+|++. + .+++||.|++
T Consensus 385 --~~~~~~~~-~~~-~~~~l~~~l~~v~F~~~~g~~v~Fd~nGd~-~~~YdI~n~q~~~~~~~~~~~VG~~~~ 452 (469)
T cd06365 385 --QSENNGKR-LIF-LPWQLHSFLKNIQFKNPAGDEVNLNQKRKL-DTEYDILNYWNFPQGLGLKVKVGEFSP 452 (469)
T ss_pred --CCcCCCCC-CCc-cHHHHHHHHHhccccCCCCCEEEecCCCCc-CceeeEEEEEECCCCCEEEEEEEEEeC
Confidence 01134433 233 48899999999999999995 999999996 47899999983 2 3699999985
No 14
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=100.00 E-value=4.9e-49 Score=400.43 Aligned_cols=375 Identities=19% Similarity=0.289 Sum_probs=304.2
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC-CCHHHHHHHHHHhHhcCcEEEEcCCChHHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTN-YSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~-~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 112 (574)
.||+||+.+. ...+.|+++|+++||.+...+++++|.+.+.++. +|++++++++|++++++|.|||||.+|..+.+
T Consensus 1 ~iG~if~~~~---~~~~~a~~~Av~~iN~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~c~ll~~~V~aiiGp~~s~~~~~ 77 (382)
T cd06380 1 PIGGLFDVDE---DQEYSAFRFAISQHNTNPNSTAPFKLLPHVDNLDTSDSFALTNAICSQLSRGVFAIFGSYDKSSVNT 77 (382)
T ss_pred CceeEECCCC---hHHHHHHHHHHHHhcccccccCCeeeeeeeeEecccchHHHHHHHHHHHhcCcEEEEecCcHHHHHH
Confidence 4899999973 6789999999999999877778889988888776 69999999999999999999999999999999
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhc
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEK 192 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~ 192 (574)
++++|+.++||+|+++++.+.++ ..++|+||+.|+. ..++++++++++|++|++||++++ +...++.+.+.+++.
T Consensus 78 ~~~~~~~~~iP~i~~~~~~~~l~-~~~~~~fr~~p~~---~~a~~~~~~~~~wk~vaii~~~~~-~~~~~~~~~~~~~~~ 152 (382)
T cd06380 78 LTSYSDALHVPFITPSFPTNDLD-DGNQFVLQMRPSL---IQALVDLIEHYGWRKVVYLYDSDR-GLLRLQQLLDYLREK 152 (382)
T ss_pred HHHHHhcCCCCeEecCCCcccCC-CCCcEEEEeccch---hHHHHHHHHhcCCeEEEEEECCCc-chHHHHHHHHHHhcc
Confidence 99999999999999988877764 4679999999863 468999999999999999997665 667788888888888
Q ss_pred C--cEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCcC
Q 008205 193 R--CRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQL 270 (574)
Q Consensus 193 g--~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~~ 270 (574)
| +.+.... +....+..|+..+|++||+.++++||+.+..+++..+++||+++||..++|+||++++.....+.
T Consensus 153 g~~i~v~~~~-~~~~~~~~d~~~~L~~ik~~~~~~iil~~~~~~~~~i~~qa~~~gm~~~~y~~i~~~~~~~~~~~---- 227 (382)
T cd06380 153 DNKWQVTARR-VDNVTDEEEFLRLLEDLDRRKEKRIVLDCESERLNKILEQIVDVGKNRKGYHYILANLGFDDIDL---- 227 (382)
T ss_pred CCceEEEEEE-ecCCCcHHHHHHHHHHhhcccceEEEEECCHHHHHHHHHHHHHhhhcccceEEEEccCCcccccH----
Confidence 8 6665432 32112457899999999999999999999999999999999999999999999998865544332
Q ss_pred ChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhcc-CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 008205 271 HSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRR-NTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSED 349 (574)
Q Consensus 271 ~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~ 349 (574)
........+++++++..+..+.+++|.++|++.++. .+......+..+++++||||++++.|++++.+.+.+.....
T Consensus 228 -~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~aa~aYDav~~~a~Al~~~~~~~~~~~~~~- 305 (382)
T cd06380 228 -SKFLFGGVNITGFQLVDNTNPTVQKFLQRWKKLDPREWPGAGTSPIKYTAALAHDAVLVMAEAFRSLRRQRGSGRHRI- 305 (382)
T ss_pred -HHhccCceeeEEEeccCCCCHHHHHHHHHHHhcCccccCcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcccccccc-
Confidence 112234456788887777788899999999987642 22222234567899999999999999999875442110000
Q ss_pred cccccccCCCccccc--ccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeecCeEEEEEEeeCCCCC
Q 008205 350 SKLSELSRGDMRFSS--VSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGL 425 (574)
Q Consensus 350 ~~~~~~~~~~~~c~~--~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~~~~~~VG~w~~~~gl 425 (574)
..+.......|.. ..+|.+|..|+++|++++|+|+||+|+||++|+|.+..++|++++++++++||+|++..||
T Consensus 306 --~~~~~~~~~~C~~~~~~~~~~g~~i~~~l~~~~~~G~tG~i~Fd~~G~~~~~~~~i~~~~~~~~~~vg~w~~~~g~ 381 (382)
T cd06380 306 --DISRRGNGGDCLANPAVPWEHGIDIERALKKVQFEGLTGNVQFDEFGQRTNYTLDVVELKTRGLRKVGYWNEDDGL 381 (382)
T ss_pred --ccccCCCCCcCCCCCCCCccchHHHHHHHHhcccCCcccceEECCCCCcccccEEEEEecCCCceEEEEECCCcCc
Confidence 0001123345653 4578899999999999999999999999999999999999999999899999999998875
No 15
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=100.00 E-value=4.5e-49 Score=409.00 Aligned_cols=371 Identities=23% Similarity=0.367 Sum_probs=297.8
Q ss_pred CeEEEEEEeccCC-------------ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHH----h
Q 008205 31 PVLNIGAVFALNS-------------TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALT----L 93 (574)
Q Consensus 31 ~~i~IG~l~~~~~-------------~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~----l 93 (574)
++|.||++||.+. ..|.....|+++|+|+||+++++|||++|+++++|+|+++..+.+.+.+ +
T Consensus 1 Gdi~igglfp~h~~~~~~~~c~~~~~~~g~~~~~a~~~Aie~IN~~~~iLpg~~L~~~i~D~~~~~~~~~~~a~~~~~~l 80 (463)
T cd06376 1 GDITLGGLFPVHARGPAGVPCGDIKKENGIHRLEAMLYALDQINSDPDLLPNVTLGARILDTCSRDTYALEQSLTFVQAL 80 (463)
T ss_pred CCeEEEEEEeeeeCCCCCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCCceEccEEEeccCCcHHHHHHHHHHHhhh
Confidence 5799999999981 1455678999999999999999999999999999999876544444433 3
Q ss_pred H-------------------hcCcEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCC-CCCCceEEecCChHHHH
Q 008205 94 L-------------------ENETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQM 153 (574)
Q Consensus 94 ~-------------------~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~ 153 (574)
+ .++|.|||||.+|..+.+++++++.++||+|+++++++.+++ ..|||+||+.|++..++
T Consensus 81 ~~~~~~~~~C~~~~~~~~~~~~~V~aviG~~~S~~t~ava~i~~~~~iP~Is~~ats~~ls~~~~~~~ffR~~p~d~~~~ 160 (463)
T cd06376 81 IQKDTSDVRCTNGEPPVFVKPEKVVGVIGASASSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQA 160 (463)
T ss_pred hhcccccCcCCCCCccccCCCCCeEEEECCCCchHHHHHHHHhccccCcccccccCChhhcccccCCceEEccCCHHHHH
Confidence 2 137999999999999999999999999999999999999987 57899999999999999
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhc-CcEEEEEeecCCCCChhhHHHHHHHhhc-CCCeEEEEEeC
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSS-MMSRILILHTY 231 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~ik~-~~~~viil~~~ 231 (574)
.|+++++++|+|++|++||++++||....+.+.+.+++. +++|.....++......|+..++++|++ .++++||+.+.
T Consensus 161 ~ai~~~i~~~~w~~Vaii~~~~~yg~~~~~~~~~~~~~~g~~~v~~~~~i~~~~~~~d~~~~l~~ik~~~~~~vIvl~~~ 240 (463)
T cd06376 161 QAMVDIVKALGWNYVSTLASEGNYGESGVEAFTQISREAGGVCIAQSIKIPREPRPGEFDKIIKRLLETPNARAVIIFAN 240 (463)
T ss_pred HHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHHHHHHHcCCceEEEEEecCCCCCHHHHHHHHHHHhccCCCeEEEEecC
Confidence 999999999999999999999999999999999999887 4788766555544567899999999986 69999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCcCChhhhhhccceEEEEEecCCChHHHHHH-------------
Q 008205 232 DIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFV------------- 298 (574)
Q Consensus 232 ~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~------------- 298 (574)
..++..++++|+++|+.+ .|+||.++.|....... ........|.+++.+.....+.+++|.
T Consensus 241 ~~~~~~ll~~a~~~~~~g-~~~wig~d~~~~~~~~~----~~~~~~~~G~~~~~~~~~~~~~F~~~~~~l~~~~~~~~~~ 315 (463)
T cd06376 241 EDDIRRVLEAAKRANQVG-HFLWVGSDSWGAKISPI----LQQEDVAEGAITILPKRASIEGFDAYFTSRTLENNRRNVW 315 (463)
T ss_pred hHHHHHHHHHHHhcCCcC-ceEEEEecccccccccc----ccCcceeeeEEEEEeccccchhHHHHHHhCCcccCCCCcH
Confidence 999999999999999874 59999999876433221 112246789999988766666665554
Q ss_pred --HHHHHhhc---------------cCCCCCCC------CCChhHHHHHHHHHHHHHHHHHHhhcCCCccccCCcccccc
Q 008205 299 --TRWRHLTR---------------RNTLNGPI------GLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSEL 355 (574)
Q Consensus 299 --~~~~~~~~---------------~~~~~~~~------~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~ 355 (574)
+.|+..++ .|.+.+.. .....++++||||+++|+||+++++++..
T Consensus 316 ~~~~w~~~f~c~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~v~dAVyaiA~ALh~l~~~~c~------------ 383 (463)
T cd06376 316 FAEFWEENFNCKLTISGSKKEDTDRKCTGQERIGRDSTYEQEGKVQFVIDAVYAMAHALHSMHKDLCP------------ 383 (463)
T ss_pred HHHHHHHhCCCcccCCCCccccccCcCcchhhccccCcccccchhHHHHHHHHHHHHHHHHHHHhhCC------------
Confidence 45655442 11111111 11236789999999999999999865421
Q ss_pred cCCCcccccccccCchHHHHHHHHhcccccccc-cEEEcCCCCCCCCcEEEEEeec-----CeEEEEEEeeC
Q 008205 356 SRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTG-PIKFTSDRDLINPAYEVINVIG-----TGSRRIGYWSN 421 (574)
Q Consensus 356 ~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG-~v~Fd~~G~r~~~~~~i~~~~~-----~~~~~VG~w~~ 421 (574)
.....|+... |.+|.+|+++|++++|+|.+| +|.||++|++. ..|+|++++. .++++||.|++
T Consensus 384 -~~~~~C~~~~-~~~~~~l~~~L~~v~F~g~tg~~v~Fd~~G~~~-~~Ydi~n~q~~~~~~~~~~~VG~w~~ 452 (463)
T cd06376 384 -GYTGVCPEME-PADGKKLLKYIRAVNFNGSAGTPVMFNENGDAP-GRYDIFQYQITNTSSPGYRLIGQWTD 452 (463)
T ss_pred -CCCCCCccCC-CCCHHHHHHHHHhCCccCCCCCeEEeCCCCCCC-CceEEEEEEecCCCceeEEEEEEECC
Confidence 1112465543 446999999999999999999 69999999975 5799999983 35799999975
No 16
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=100.00 E-value=1.1e-48 Score=407.14 Aligned_cols=378 Identities=20% Similarity=0.317 Sum_probs=309.1
Q ss_pred CCCCCeEEEEEEeccCC----------------------ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHH
Q 008205 27 STIPPVLNIGAVFALNS----------------------TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRF 84 (574)
Q Consensus 27 ~~~~~~i~IG~l~~~~~----------------------~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~ 84 (574)
...+++|.||++||.+. ..|.....|+.+|+|+||+++++||+++|+++++|+|+++.
T Consensus 7 ~~~~Gd~~igglFpvh~~~~~~~~~~~~~~~~~~c~~~~~~g~~~~~am~~AieeIN~~~~lLp~i~Lg~~i~Dtc~~~~ 86 (510)
T cd06364 7 AQKKGDIILGGLFPIHFGVAAKDQDLKSRPESVECIRYNFRGFRWLQAMIFAIEEINNSPTLLPNITLGYRIFDTCNTVS 86 (510)
T ss_pred eeecCCEEEEEEEECcccccccccccccCCCCCcccccChhhHHHHHHHHHHHHHHhCCCccCCCCEEeEEEEccCCchH
Confidence 45789999999999984 23567789999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhc-------------------CcEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCC-CCCCceEE
Q 008205 85 LGMVEALTLLEN-------------------ETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVR 144 (574)
Q Consensus 85 ~a~~~~~~l~~~-------------------~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r 144 (574)
.|++.+.+++.+ ++.|||||.+|..+.++++++..++||+|+++++++.+++ ..||++||
T Consensus 87 ~a~~~a~~li~~~~~~~~~~~~~c~~~~~~~~v~aVIG~~sS~~s~ava~~~~~~~IP~IS~~sss~~ls~~~~yp~ffR 166 (510)
T cd06364 87 KALEATLSFVAQNKIDSLNLDEFCNCSEHIPSTIAVVGATGSGVSTAVANLLGLFYIPQVSYASSSRLLSNKNQFKSFLR 166 (510)
T ss_pred HHHHHHHHHHhcccccccccccccccCCCCCceEEEECCCchhHHHHHHHHhccccccccccccCCcccCCccccCCeeE
Confidence 999999998754 3569999999999999999999999999999999988987 57999999
Q ss_pred ecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCe
Q 008205 145 TTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSR 224 (574)
Q Consensus 145 ~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~ 224 (574)
+.|++..++.|+++++++|+|++|++|+.+++||...++.|++.+++.|+||+..+.++...+..++.++++++++++++
T Consensus 167 t~psd~~q~~Ai~~l~~~f~wk~VaiI~~dd~yG~~~~~~~~~~~~~~Gi~I~~~~~i~~~~~~~d~~~~l~klk~~~a~ 246 (510)
T cd06364 167 TIPNDEHQATAMADIIEYFRWNWVGTIAADDDYGRPGIEKFREEAEERDICIDFSELISQYSDEEEIQRVVEVIQNSTAK 246 (510)
T ss_pred cCCChHHHHHHHHHHHHHcCCeEEEEEEecCcchHHHHHHHHHHHHHCCcEEEEEEEeCCCCCHHHHHHHHHHHHhcCCe
Confidence 99999999999999999999999999999999999999999999999999999887676434677899999999999999
Q ss_pred EEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCcCChhhhhhccceEEEEEecCCChHHHHHHH-----
Q 008205 225 ILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVT----- 299 (574)
Q Consensus 225 viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~----- 299 (574)
+||+.+...++..++++|.++|+. +.+||.++.|........ ....+...|++++.+.....+.+++|++
T Consensus 247 vVvl~~~~~~~~~ll~qa~~~g~~--~~iwI~s~~w~~~~~~~~---~~~~~~~gg~lg~~~~~~~i~~f~~~l~~l~p~ 321 (510)
T cd06364 247 VIVVFSSGPDLEPLIKEIVRRNIT--GKIWLASEAWASSSLIAM---PEYFDVMGGTIGFALKAGQIPGFREFLQKVHPK 321 (510)
T ss_pred EEEEEeCcHHHHHHHHHHHHhCCC--CcEEEEEchhhccccccc---CCccceeeEEEEEEECCCcCccHHHHHHhCCcc
Confidence 999999999999999999999985 479999987754322211 2344678899999887766665555543
Q ss_pred ----------HHHHhhc-----------------------------------cCCCCCCCC----------CChhHHHHH
Q 008205 300 ----------RWRHLTR-----------------------------------RNTLNGPIG----------LNSFGLYAY 324 (574)
Q Consensus 300 ----------~~~~~~~-----------------------------------~~~~~~~~~----------~~~~~~~~y 324 (574)
.|+..++ .|...+... ....+..+|
T Consensus 322 ~~~~~~~~~~~we~~f~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~v~ 401 (510)
T cd06364 322 KSSHNGFAKEFWEETFNCYLEDSPKNALPVDTFLGHEESGDDSENGSTAFRPLCTGDENIASVETPYLDYTHLRISYNVY 401 (510)
T ss_pred cCCCChHHHHHHHHhcCCCCCCCcccccccccccccccccccccccccccCCCCCChhhhcccCCccccccchhhHHHHH
Confidence 3544443 111111110 123356799
Q ss_pred HHHHHHHHHHHHHhhcCCCc-cccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccc-cEEEcCCCCCCCCc
Q 008205 325 DTLWLLAHAIGAFFDQGGNI-SFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTG-PIKFTSDRDLINPA 402 (574)
Q Consensus 325 Dav~~~a~Al~~~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG-~v~Fd~~G~r~~~~ 402 (574)
|||+++|+|||+++.|.... ++ ....|+..... ++++|+++|++++|.|.+| .|.||++|+. ...
T Consensus 402 ~AVyAvAhaLh~~~~c~~~~~~~-----------~~~~c~~~~~~-~~~~l~~~L~~v~F~~~~g~~v~Fd~~Gd~-~~~ 468 (510)
T cd06364 402 LAVYSIAHALQDIYTCTPGKGLF-----------TNGSCADIKKV-EAWQVLKHLRHLNFTDNMGEQVRFDEGGDL-VGN 468 (510)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCc-----------cCCCCCCCCCC-CHHHHHHHHHhcEEecCCCCEEEEecCCCC-ccc
Confidence 99999999999999775321 10 01247664445 4889999999999999998 5999999995 578
Q ss_pred EEEEEeec---C---eEEEEEEeeCC
Q 008205 403 YEVINVIG---T---GSRRIGYWSNH 422 (574)
Q Consensus 403 ~~i~~~~~---~---~~~~VG~w~~~ 422 (574)
|+|+|++. . .+++||.|++.
T Consensus 469 YdI~n~q~~~~~~~~~~v~VG~~~~~ 494 (510)
T cd06364 469 YSIINWHLSPEDGSVVFKEVGYYNVY 494 (510)
T ss_pred eeEEEeeecCCCCcEEEEEEEEEcCC
Confidence 99999993 2 26899999853
No 17
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=100.00 E-value=1.1e-48 Score=396.69 Aligned_cols=336 Identities=22% Similarity=0.333 Sum_probs=278.2
Q ss_pred CCeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHH-hHhcCcEEEEc-CC-C
Q 008205 30 PPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALT-LLENETVAIIG-PQ-F 106 (574)
Q Consensus 30 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~-l~~~~v~aiiG-p~-~ 106 (574)
+..|+||+++|. .....|+++|++++|++.+.+++.++.....+.++++.+++..+|+ |++++|.||+| +. +
T Consensus 17 ~~~i~IG~i~~~-----~~~~~~~~~Ai~~~N~~~~~~~~~~l~~~~i~~~~~~~~~a~~~~~~Li~~~V~aii~~~~~s 91 (377)
T cd06379 17 PKTVNIGAVLSN-----KKHEQEFKEAVNAANVERHGSRKIKLNATTITHDPNPIQTALSVCEQLISNQVYAVIVSHPPT 91 (377)
T ss_pred CcEEEEeEEecc-----hhHHHHHHHHHHHHhhhhcCCcceeeccceEeecCChhhHHHHHHHHHhhcceEEEEEeCCCC
Confidence 578999999984 3578999999999999655434444444433334577777777775 67889999974 33 3
Q ss_pred hH---HHHHHHHhhccCCccEEecccCCCCcCCC-CCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchH
Q 008205 107 SV---IAHLVSHIANEFQVPLLSFAATDPSLSSL-QYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGI 182 (574)
Q Consensus 107 s~---~~~~va~~~~~~~iP~Is~~~~~~~ls~~-~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~ 182 (574)
+. .+.+++.+|+.++||+|+++++++.+++. .|||+||+.|++..++.++++++++|+|++|++||++++||...+
T Consensus 92 s~~~~~~~~v~~~~~~~~iP~Is~~a~~~~ls~~~~~~~~~R~~psd~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~ 171 (377)
T cd06379 92 SNDHLTPTSVSYTAGFYRIPVVGISTRDSIFSDKNIHLSFLRTVPPYSHQADVWLEMLRSFKWNKVILLVSDDHEGRAAQ 171 (377)
T ss_pred CcccccHHHHHHHhhCCCCcEEecccCCccccCccccccEEEecCCHHHHHHHHHHHHHHcCCeEEEEEEEcCcchhHHH
Confidence 32 46778899999999999998888888874 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCc----EEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeC
Q 008205 183 AALGDKLAEKRC----RLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD 258 (574)
Q Consensus 183 ~~l~~~~~~~g~----~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~ 258 (574)
+.+++.+++.|+ ++.....++ .+..++..++++++..++++|+++|...++..++++|+++||++++|+||+++
T Consensus 172 ~~~~~~~~~~g~~~~~~v~~~~~~~--~~~~d~~~~l~~ik~~~~~vIvl~~~~~~~~~l~~qa~~~g~~~~~~~wi~t~ 249 (377)
T cd06379 172 KRFETLLEEREIEFKIKVEKVVEFE--PGEKNVTSLLQEAKELTSRVILLSASEDDAAVIYRNAGMLNMTGEGYVWIVSE 249 (377)
T ss_pred HHHHHHHHhcCCccceeeeEEEecC--CchhhHHHHHHHHhhcCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCEEEEEec
Confidence 999999999999 877766665 35678999999999999999999999999999999999999999999999998
Q ss_pred ccccccCCCCcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHh
Q 008205 259 WLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFF 338 (574)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~ 338 (574)
.+... .+...|++++++..+ ..+++++||||+++|+|++++.
T Consensus 250 ~~~~~-----------~~~~~g~~g~~~~~~---------------------------~~~~~~~yDAV~~~A~Al~~~~ 291 (377)
T cd06379 250 QAGAA-----------RNAPDGVLGLQLING---------------------------KNESSHIRDAVAVLASAIQELF 291 (377)
T ss_pred ccccc-----------ccCCCceEEEEECCC---------------------------CCHHHHHHHHHHHHHHHHHHHH
Confidence 76321 134678999887542 1246789999999999999987
Q ss_pred hcCCCccccCCcccccccCCCccccccc-ccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeecCeEEEEE
Q 008205 339 DQGGNISFSEDSKLSELSRGDMRFSSVS-IFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIG 417 (574)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~-~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~~~~~~VG 417 (574)
++.. .+ .....|.... +|.+|..++++|++++|+|+||+|+||++|+|.++.|+|+++++.++++||
T Consensus 292 ~~~~-~~-----------~~~~~c~~~~~~~~~g~~l~~~l~~v~f~G~tg~i~Fd~~Gd~~~~~~~I~~~~~~~~~~VG 359 (377)
T cd06379 292 EKEN-IT-----------EPPRECVGNTVIWETGPLFKRALMSSKYPGETGRVEFNDDGDRKFANYDIMNIQNRKLVQVG 359 (377)
T ss_pred cCCC-CC-----------CCCccccCCCCCCcchHHHHHHHHhCCcCCccCceEECCCCCccCccEEEEEecCCCceEee
Confidence 6322 11 1123455433 688899999999999999999999999999998899999999999999999
Q ss_pred EeeCC
Q 008205 418 YWSNH 422 (574)
Q Consensus 418 ~w~~~ 422 (574)
.|++.
T Consensus 360 ~w~~~ 364 (377)
T cd06379 360 LYNGD 364 (377)
T ss_pred EEcCc
Confidence 99864
No 18
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=100.00 E-value=8.8e-48 Score=389.80 Aligned_cols=333 Identities=23% Similarity=0.304 Sum_probs=281.1
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-------------------CcEEEEcCCC
Q 008205 46 GKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-------------------ETVAIIGPQF 106 (574)
Q Consensus 46 g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-------------------~v~aiiGp~~ 106 (574)
|.+...|+.+|+|+||+++ +|||++|+++++|+|+++..|++.+.+++++ +|.|||||.+
T Consensus 34 g~~~~~am~~AieeIN~~~-~Lpg~~L~~~i~Dt~~~~~~a~~~a~~li~~~~~~~~~~~~~c~~~~~~~~V~aVIG~~~ 112 (403)
T cd06361 34 GFLQTLAMIHAIEMINNST-LLLGVTLGYEIYDTCSEVTTAMAAVLRFLSKFNCSRSTVEFKCDYSQYVPRIKAVIGAGY 112 (403)
T ss_pred HHHHHHHHHHHHHHHhCCC-CCCCCEEceEEEeCCCChHHHHHHHHHHHhhcccccccccccccCCCCCCCeEEEECCCc
Confidence 5677899999999999998 6799999999999999999999999999873 7999999999
Q ss_pred hHHHHHHHHhhccCCccEEecccCCCCcCC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHH
Q 008205 107 SVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAAL 185 (574)
Q Consensus 107 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l 185 (574)
|..+.+++++++.++||+|+++++++.+++ .+||||||+.|++..+++++++++++|+|++|++|+++++||....+.|
T Consensus 113 S~~s~ava~v~~~~~IP~IS~~ats~~Ls~~~~~~~ffRt~p~D~~qa~ai~~li~~~~w~~Vaii~~~d~yG~~~~~~f 192 (403)
T cd06361 113 SEISMAVSRMLNLQLIPQVSYASTAEILSDKIRFPSFLRTVPSDFYQTKAMAHLIKKSGWNWVGIIITDDDYGRSALETF 192 (403)
T ss_pred chHHHHHHHHhccCCcceEecCcCCcccCCcccCCCeeECCCchHhHHHHHHHHHHHcCCcEEEEEEecCchHHHHHHHH
Confidence 999999999999999999999999999997 5799999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcEEEEEeecCCCCCh-----hhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCcc
Q 008205 186 GDKLAEKRCRLSHKVPLSPKGSR-----NQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWL 260 (574)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~-----~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~ 260 (574)
++.+++.|+||+..+.++..... .++..+++.++.+++++||+.+....+..++++|+++|+ +++||.++.|
T Consensus 193 ~~~~~~~GicIa~~e~~~~~~~~~~~~~~~~~~~~~~ik~~~a~vVvv~~~~~~~~~l~~~a~~~g~---~~~wigs~~w 269 (403)
T cd06361 193 IIQAEANGVCIAFKEILPASLSDNTKLNRIIRTTEKIIEENKVNVIVVFARQFHVFLLFNKAIERNI---NKVWIASDNW 269 (403)
T ss_pred HHHHHHCCeEEEEEEEecCccCcchhHHHHHHHHHHHHhcCCCeEEEEEeChHHHHHHHHHHHHhCC---CeEEEEECcc
Confidence 99999999999998877653211 455666677889999999999999999999999999998 6899999988
Q ss_pred ccccCCCCcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhc
Q 008205 261 SSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQ 340 (574)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~ 340 (574)
........ ........|.+++.+..+..+ .|.+.+++.+ ...+||||+++|+||+++..+
T Consensus 270 ~~~~~~~~---~~~~~~~~g~ig~~~~~~~~~---~F~~~~~~~~--------------~~~v~~AVyaiA~Al~~~~~~ 329 (403)
T cd06361 270 STAKKILT---DPNVKKIGKVVGFTFKSGNIS---SFHQFLKNLL--------------IHSIQLAVFALAHAIRDLCQE 329 (403)
T ss_pred cCcccccc---CCcccccceEEEEEecCCccc---hHHHHHHHhh--------------HHHHHHHHHHHHHHHHHhccC
Confidence 65322211 112246678888888665444 4445555432 345899999999999986433
Q ss_pred CCCccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeecC----eEEEE
Q 008205 341 GGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGT----GSRRI 416 (574)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~~----~~~~V 416 (574)
+ .|+..... ++++|+++|++++|.|.+|.+.||++|+. ...|+|++++.+ .+++|
T Consensus 330 ~-------------------~c~~~~~~-~~~~l~~~L~~~~f~g~~~~v~Fd~~gd~-~~~y~I~~~~~~~~~~~~~~v 388 (403)
T cd06361 330 R-------------------QCQNPNAF-QPWELLGQLKNVTFEDGGNMYHFDANGDL-NLGYDVVLWKEDNGHMTVTIM 388 (403)
T ss_pred C-------------------CCCCCCCc-CHHHHHHHHheeEEecCCceEEECCCCCC-CcceEEEEeEecCCcEEEEEE
Confidence 1 25443333 58999999999999999889999999985 578999999953 26999
Q ss_pred EEeeCCC
Q 008205 417 GYWSNHS 423 (574)
Q Consensus 417 G~w~~~~ 423 (574)
|.|++..
T Consensus 389 g~~~~~~ 395 (403)
T cd06361 389 AEYDPQN 395 (403)
T ss_pred EEEeCCC
Confidence 9998865
No 19
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=100.00 E-value=5.6e-48 Score=389.72 Aligned_cols=339 Identities=19% Similarity=0.254 Sum_probs=290.2
Q ss_pred eEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChHH-
Q 008205 32 VLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSVI- 109 (574)
Q Consensus 32 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~- 109 (574)
.|+||+++|.+. ...+++.|+..+|.+..+..+++++++..|+.+||.++++++|+++.+ +|.+|+||.+|..
T Consensus 2 ~~~ig~~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~l~~~d~~~d~~~~~~~~~~~l~~~~v~~iig~~~s~~~ 76 (362)
T cd06367 2 TVNIGVVLSGSS-----SEPAFRDAVTAANFRHNLPYNLSLEAVAVSNDTDPISLLLSVCDLLVVQVVAGVVFSDPTDEE 76 (362)
T ss_pred ceEEEEEecCCc-----chhhHHHHhhhccccccCCcccceEEEEEecCCCHHHHHHHHHHHhcccceEEEEecCCCCcc
Confidence 589999999873 358899999999988755568999999999999999999999999865 7889999999987
Q ss_pred --HHHHHHhhccCCccEEecccCCCCc-CC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHH
Q 008205 110 --AHLVSHIANEFQVPLLSFAATDPSL-SS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAAL 185 (574)
Q Consensus 110 --~~~va~~~~~~~iP~Is~~~~~~~l-s~-~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l 185 (574)
+.+++++|+.++||+|+++++++.+ ++ ..|||+||+.|++..+++++++++++|+|++|++||+++++|....+.+
T Consensus 77 ~~~~~~~~v~~~~~iP~Is~~~~~~~~~s~~~~~~~~~R~~p~~~~~~~ai~~ll~~~~w~~vaii~~~~~~g~~~~~~l 156 (362)
T cd06367 77 AVAQILDFTSAQTRIPVVGISGRESIFMSDKNIHSLFLQTGPSLEQQADVMLEILEEYDWHQFSVVTSRDPGYRDFLDRV 156 (362)
T ss_pred chhhhhhhhhhhhcCcEEEeeccccccccCCCcccceEeecCcHHHHHHHHHHHHHHcCCeEEEEEEEcCcccHHHHHHH
Confidence 8999999999999999999888888 76 5799999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcE--EEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccc
Q 008205 186 GDKLAEKRCR--LSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSI 263 (574)
Q Consensus 186 ~~~~~~~g~~--v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~ 263 (574)
++.+++.|++ +.....++.. ...++..++.++++.++++||++|+...+..++++|.++||..++|+||+++.+...
T Consensus 157 ~~~l~~~g~~~~i~~~~~~~~~-~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~g~~~~~~~wI~~~~~~~~ 235 (362)
T cd06367 157 ETTLEESFVGWEFQLVLTLDLS-DDDGDARLLRQLKKLESRVILLYCSKEEAERIFEAAASLGLTGPGYVWIVGELALGS 235 (362)
T ss_pred HHHHHhcccceeeeeeEEeccC-CCcchHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHHHHcCCCCCCcEEEECcccccc
Confidence 9999999988 6655555432 222788899999999999999999999999999999999999999999999987642
Q ss_pred cCCCCcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCC
Q 008205 264 LDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGN 343 (574)
Q Consensus 264 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~ 343 (574)
.. .......|++++++... ..+.+++||||+++|+|++++.+++..
T Consensus 236 ~~-------~~~~~~~G~~g~~~~~~---------------------------~~~~~~~~Dav~~~a~Al~~~~~~~~~ 281 (362)
T cd06367 236 GL-------APEGLPVGLLGVGLDTW---------------------------YSLEARVRDAVAIVARAAESLLRDKGA 281 (362)
T ss_pred cC-------CccCCCCeeEEEEeccc---------------------------ccHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 11 12346679999987532 234688999999999999999875332
Q ss_pred ccccCCcccccccCCCccccccc--ccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEee-cCeEEEEEEee
Q 008205 344 ISFSEDSKLSELSRGDMRFSSVS--IFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVI-GTGSRRIGYWS 420 (574)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~c~~~~--~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~-~~~~~~VG~w~ 420 (574)
. ......|.... .|.+|..|+++|++++|.|+||+|.||++|+|.++.|+|+|++ ..++++||.|+
T Consensus 282 ~-----------~~~~~~C~~~~~~~~~~g~~l~~~l~~~~f~G~tg~v~F~~~G~~~~~~~~I~~l~~~~~~~~VG~W~ 350 (362)
T cd06367 282 L-----------PEPPVNCYDTANKRESSGQYLARFLMNVTFDGETGDVSFNEDGYLSNPKLVIINLRRNRKWERVGSWE 350 (362)
T ss_pred C-----------CCCCCCcCCCCCCCCCchHHHHHHHhcccccCCCCceeECCCcccccceEEEEEecCCCcceEEEEEc
Confidence 1 11234576653 2788999999999999999999999999999988999999999 78999999997
Q ss_pred C
Q 008205 421 N 421 (574)
Q Consensus 421 ~ 421 (574)
+
T Consensus 351 ~ 351 (362)
T cd06367 351 N 351 (362)
T ss_pred C
Confidence 5
No 20
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=100.00 E-value=1.8e-48 Score=380.77 Aligned_cols=326 Identities=21% Similarity=0.325 Sum_probs=267.4
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCH-HHHHHHHHHhHhcCcEEEEcCCChHH-HH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSR-FLGMVEALTLLENETVAIIGPQFSVI-AH 111 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~-~~a~~~~~~l~~~~v~aiiGp~~s~~-~~ 111 (574)
+||+||+..+..|+....|+++|++++|++++++++.+|++++.|...++ +.++.++|+++++||.|||||.+|.. +.
T Consensus 1 ~iG~i~d~~s~~G~~~~~a~~lAv~~iN~~~~~~~~~~l~~~~~d~~~d~~f~~~~~~~~~l~~gV~AIiGp~ss~~~~~ 80 (333)
T cd06394 1 RIAAILDDPMECGRGERLALALARERINRAPERLGKARVEVDIFELLRDSQYETTDTMCQILPKGVVSVLGPSSSPASSS 80 (333)
T ss_pred CceeeecCCccccHHHHHHHHHHHHHhccCccccCCceeEEEEeeccccChHHHHHHHHHHHhcCeEEEECCCCchHHHH
Confidence 48999999999999999999999999999998887789999999998855 58889999999999999999999965 67
Q ss_pred HHHHhhccCCccEEecccCC-CCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHh
Q 008205 112 LVSHIANEFQVPLLSFAATD-PSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLA 190 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~-~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~ 190 (574)
+++++|+..+||+|++++.. |.+...++++ +++.|++..+++|+++++++|+|++|++||+++++ +..|++.++
T Consensus 81 ~v~~i~~~~~VP~Is~~~~~~~~~~~~~~~~-i~l~P~~~~~~~Ai~dli~~~~W~~v~~iYe~d~~----l~~L~~~l~ 155 (333)
T cd06394 81 IVSHICGEKEIPHFKVGPEETPKLQYLRFAS-VNLHPSNEDISVAVAGILNSFNYPTASLICAKAEC----LLRLEELLR 155 (333)
T ss_pred HHHHHhhccCCceEEeccccCcccccccceE-EEecCCHHHHHHHHHHHHHhcCCCEEEEEEeCcHH----HHHHHHHHH
Confidence 99999999999999975432 3333233334 89999999999999999999999999999998874 566666666
Q ss_pred hcCc---EEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCC
Q 008205 191 EKRC---RLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTD 267 (574)
Q Consensus 191 ~~g~---~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~ 267 (574)
...+ .+.... . .+..+++++|++|+++++++||++|+++.+..++++|+++||+.+.|+||++++.....++
T Consensus 156 ~~~~~~~~i~~~~-~---~~~~d~~~~L~~ik~~~~~~iVv~~~~~~a~~il~qa~~lGm~~~~y~~i~T~l~~~~~~L- 230 (333)
T cd06394 156 QFLISKETLSVRM-L---DDSRDPTPLLKEIRDDKTATIIIDANASMSHTILLKASELGMTSAFYKYILTTMDFPLLRL- 230 (333)
T ss_pred hhcccCCceeeEE-c---cCcccHHHHHHHHHhcCCCEEEEECChHHHHHHHHHHHHcCCCCCceEEEEecCCcccccH-
Confidence 4432 222111 1 2456899999999999999999999999999999999999999999999999987665444
Q ss_pred CcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhcc-CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 008205 268 SQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRR-NTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISF 346 (574)
Q Consensus 268 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~ 346 (574)
.++.....++++|++.+++.+..++|.+.|++.+.. +...+.......++++||||+++
T Consensus 231 ----~~~~~~~~niTgF~l~d~~~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~~al~~D~v~~~---------------- 290 (333)
T cd06394 231 ----DSIVDDRSNILGFSMFNQSHAFYQEFIRSLNQSWRENCDHSPYTGPALSSALLFDAVYAV---------------- 290 (333)
T ss_pred ----HHhhcCCcceEEEEeecCCcHHHHHHHHHHHHhhhhhcccccCCCcccceeeecceEEEE----------------
Confidence 344455778999999999999999999988875521 11111111223567777775433
Q ss_pred cCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeecCeEEEEEEeeCCCCCc
Q 008205 347 SEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLS 426 (574)
Q Consensus 347 ~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~~~~~~VG~w~~~~gl~ 426 (574)
|+||+|+||++|+|.+++++|++++.+|+++||+|++.+||+
T Consensus 291 --------------------------------------glTg~i~f~~~g~R~~~~l~v~~l~~~g~~kig~W~~~~gl~ 332 (333)
T cd06394 291 --------------------------------------GLTGRIEFNSKGQRSNYTLKILQKTRSGFRQIGQWHSNETLS 332 (333)
T ss_pred --------------------------------------eeecceecCCCCcCcccEEEEEEecCCcceEEEEEeCCCCcC
Confidence 899999999999999999999999999999999999999875
Q ss_pred c
Q 008205 427 V 427 (574)
Q Consensus 427 ~ 427 (574)
+
T Consensus 333 ~ 333 (333)
T cd06394 333 M 333 (333)
T ss_pred C
Confidence 3
No 21
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=100.00 E-value=1.4e-46 Score=381.09 Aligned_cols=356 Identities=16% Similarity=0.210 Sum_probs=288.5
Q ss_pred EEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHH
Q 008205 36 GAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (574)
Q Consensus 36 G~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 112 (574)
=+|+|.+ ...+.....|+++|+++||+++++++|++|+++++|++|++..+.+.+..+..++|.|||||.||..+.+
T Consensus 3 ~~l~p~~~~~~~~~~~~~~a~~lAie~IN~~~~ll~g~~l~~~~~d~~~~~~~~~~~~~~l~~~~v~aiiGp~~s~~~~~ 82 (387)
T cd06386 3 LVLLPQNNSYLFSSARVAPAIEYAQRRLEANRLLFPGFRFNVHYEDSDCGNEALFSLVDRSCARKPDLILGPVCEYAAAP 82 (387)
T ss_pred EEECCCCCCcceehhhhHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCcCCchHHHHHHHHHHhhCCCEEECCCCccHHHH
Confidence 3566655 3344678899999999999999998999999999999998866666666666679999999999999999
Q ss_pred HHHhhccCCccEEecccCCCCcCC--CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcch---HHHHHH
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSS--LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNG---IAALGD 187 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~--~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~---~~~l~~ 187 (574)
++++|+.++||+|+++++++.+++ ..||++||+.|++..++.++++++++|+|++|++||++++++... ++.+.+
T Consensus 83 va~ia~~~~iP~Is~~a~~~~~s~~~~~yp~~~R~~p~~~~~~~a~~~ll~~~~W~~vaiiy~~~~~~~~~~~~~~~l~~ 162 (387)
T cd06386 83 VARLASHWNIPMISAGALAAGFSHKKSEYSHLTRVAPSYVKMGETFSALFERFHWRSALLVYEDDKQERNCYFTLEGVHH 162 (387)
T ss_pred HHHHHHhCCCcEEccccCchhhccCcccCCeeEEecCchHHHHHHHHHHHHhCCCeEEEEEEEcCCCCccceehHHHHHH
Confidence 999999999999999988888876 368999999999999999999999999999999999999888765 889999
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccc-cCC
Q 008205 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSI-LDT 266 (574)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~-~~~ 266 (574)
.+++.|++|......+ ....++..+++++++.+ |+||++++.+.+..++++|+++||+..+|+||..+...+. ...
T Consensus 163 ~~~~~gi~v~~~~~~~--~~~~d~~~~l~~ik~~~-rvii~~~~~~~~~~ll~~A~~~gm~~~~yv~i~~d~~~~~~~~~ 239 (387)
T cd06386 163 VFQEEGYHMSIYPFDE--TKDLDLDEIIRAIQASE-RVVIMCAGADTIRSIMLAAHRRGLTSGDYIFFNIELFNSSSYGD 239 (387)
T ss_pred HHHhcCceEEEEecCC--CCcccHHHHHHHHHhcC-cEEEEecCHHHHHHHHHHHHHcCCCCCCEEEEEEecccccccCC
Confidence 9999999998765443 24568999999999888 9999999999999999999999999999999999865311 100
Q ss_pred -----CCcCCh---hhhhhccceEEEEEecCCChHHHHHHHHHHHhhccCCCCC-CCCCChhHHHHHHHHHHHHHHHHHH
Q 008205 267 -----DSQLHS---EKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNG-PIGLNSFGLYAYDTLWLLAHAIGAF 337 (574)
Q Consensus 267 -----~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~yDav~~~a~Al~~~ 337 (574)
.+..+. .....+.|++++++ ..+.+++|.+++++++..++..+ ...++.+++++|||++++|+|++++
T Consensus 240 ~~w~~~~~~~~~~~~a~~~~~~v~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~aa~~yDav~l~A~Al~~~ 316 (387)
T cd06386 240 GSWKRGDKHDFEAKQAYSSLNTVTLLRT---VKPEFEKFSMEVKSSVEKAGDLNDCDYVNMFVEGFHDAILLYALALHEV 316 (387)
T ss_pred CCCccCCCcCHHHHHHHHhheEEeccCC---CChHHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 000111 12234445555444 45778899999886554322111 1234578899999999999999998
Q ss_pred hhcCCCccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeec---CeEE
Q 008205 338 FDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIG---TGSR 414 (574)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~---~~~~ 414 (574)
++.+.. |.+|..|+++|++++|+|+||++.||++|+|. ..|.|+.+++ .+++
T Consensus 317 ~~~g~~------------------------~~~g~~l~~~l~~~~f~G~tG~v~~d~~g~r~-~~~~v~~~~~~~~~~~~ 371 (387)
T cd06386 317 LKNGYS------------------------KKDGTKITQRMWNRTFEGIAGQVSIDANGDRY-GDFSVIAMTDVEAGTYE 371 (387)
T ss_pred hhCCCC------------------------CCCHHHHHHHHhCCceeeccccEEECCCCCcc-ccEEEEEccCCCCccEE
Confidence 765421 23799999999999999999999999999986 5999999973 5789
Q ss_pred EEEEeeCC
Q 008205 415 RIGYWSNH 422 (574)
Q Consensus 415 ~VG~w~~~ 422 (574)
.||.|...
T Consensus 372 ~~~~~~~~ 379 (387)
T cd06386 372 VVGNYFGK 379 (387)
T ss_pred EEeEEccc
Confidence 99999753
No 22
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-46 Score=373.32 Aligned_cols=413 Identities=16% Similarity=0.251 Sum_probs=310.5
Q ss_pred CCCHHHHHHHHHHhHhc-CcEEEEcCCChH---HHHHHHHhhccCCccEEecccCC-CCcCCC-CCCceEEecCChHHHH
Q 008205 80 NYSRFLGMVEALTLLEN-ETVAIIGPQFSV---IAHLVSHIANEFQVPLLSFAATD-PSLSSL-QYPFFVRTTQSDLYQM 153 (574)
Q Consensus 80 ~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~---~~~~va~~~~~~~iP~Is~~~~~-~~ls~~-~~~~~~r~~ps~~~~~ 153 (574)
..||...+..+|+++.. +|.+|+--..+. .+..+--++...+||+|+..+.+ ..++++ .-..|+++.||.++|+
T Consensus 82 ~tdPkSll~~vC~lvs~~~V~glvf~d~s~~~avaq~LDfiSs~t~iPIisi~gg~a~~~~~kd~gs~flQlg~Sieqqa 161 (1258)
T KOG1053|consen 82 TTDPKSLLTQVCDLVSGARVHGLVFEDDSDTEAVAQILDFISSQTHIPIISIHGGAAMVLTPKDLGSTFLQLGPSIEQQA 161 (1258)
T ss_pred CCCHHHHHHHHHhhhhhcceeEEEeecCccchHHHHHHHHHHHhcCCcEEEEecCccceecCCCCcceEEEeCCcHHHHH
Confidence 36999999999999976 888877544443 33444455678899999986544 344443 3358999999999999
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhc--CcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEK--RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~--g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~ 231 (574)
+++.++|+.|+|..|++|....++....+..+++..+.. ||.+.....+.+. .++.......++|+.++.||+++|+
T Consensus 162 ~Vml~iL~~ydW~~Fs~vtt~~pg~~~f~~~ir~~~d~s~vgwe~i~v~~l~~s-~~d~~a~~q~qLkki~a~VillyC~ 240 (1258)
T KOG1053|consen 162 QVMLKILEEYDWYNFSLVTTQFPGNRTFVSLIRQTNDNSHVGWEMINVLTLDPS-TDDLLAKLQAQLKKIQAPVILLYCS 240 (1258)
T ss_pred HHHHHHHHHcCcceeEEEEeecCchHHHHHHHHHhhhhccccceeeeeeecCCC-CCchHHHHHHHHHhcCCcEEEEEec
Confidence 999999999999999999988887777778887777654 5555544444332 2222333444566677999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhccCCCC
Q 008205 232 DIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLN 311 (574)
Q Consensus 232 ~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 311 (574)
.+++..|+..|.++||++++|.||++...... + ..-.....|.+.+.... |+
T Consensus 241 ~eea~~IF~~A~q~Gl~g~~y~Wi~pqlv~g~-~------~~pa~~P~GLisv~~~~------------w~--------- 292 (1258)
T KOG1053|consen 241 REEAERIFEEAEQAGLTGPGYVWIVPQLVEGL-E------PRPAEFPLGLISVSYDT------------WR--------- 292 (1258)
T ss_pred HHHHHHHHHHHHhcCCcCCceEEEeehhccCC-C------CCCccCccceeeeeccc------------hh---------
Confidence 99999999999999999999999997654331 0 11124566777665322 22
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCccccCCcccccccCCCccccccc--ccCchHHHHHHHHhccccccccc
Q 008205 312 GPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVS--IFNGGKMLLDNILQVNMTGVTGP 389 (574)
Q Consensus 312 ~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~--~~~~g~~l~~~l~~~~f~G~tG~ 389 (574)
....+.+-|++.++|.|.+.+.+....++. ...+|-... ....+..+.++|.|++|+| ++
T Consensus 293 -----~~l~~rVrdgvaiva~aa~s~~~~~~~lp~-----------~~~~C~~~~~~~~~~~~~l~r~l~NvT~~g--~~ 354 (1258)
T KOG1053|consen 293 -----YSLEARVRDGVAIVARAASSMLRIHGFLPE-----------PKMDCREQEETRLTSGETLHRFLANVTWDG--RD 354 (1258)
T ss_pred -----hhHHHHHhhhHHHHHHHHHHHHhhcccCCC-----------cccccccccCccccchhhhhhhhheeeecc--cc
Confidence 223577899999999999999887554321 223454322 3335889999999999999 77
Q ss_pred EEEcCCCCCCCCcEEEEEeec-CeEEEEEEeeCCCCCcccCcccccCCCCCCCCCccccceeecCCCCccCCCceeecCC
Q 008205 390 IKFTSDRDLINPAYEVINVIG-TGSRRIGYWSNHSGLSVVPPEALYKEPSNRSASSQHLYSAVWPGQTTQKPRGWVFPNN 468 (574)
Q Consensus 390 v~Fd~~G~r~~~~~~i~~~~~-~~~~~VG~w~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~~~~~~~ 468 (574)
++|+++|..+++.+-++.+++ ..|.+||.|... .|.|. -.+||... ..+.... +
T Consensus 355 lsf~~~g~~v~p~lvvI~l~~~r~We~VG~We~~-~L~M~--------------------y~vWPr~~-~~~q~~~---d 409 (1258)
T KOG1053|consen 355 LSFNEDGYLVHPNLVVIDLNRDRTWERVGSWENG-TLVMK--------------------YPVWPRYH-KFLQPVP---D 409 (1258)
T ss_pred eeecCCceeeccceEEEecCCCcchheeceecCC-eEEEe--------------------cccccccc-CccCCCC---C
Confidence 999999988889888888775 578999999754 34443 34788322 2222222 3
Q ss_pred CCceEEeccCccccccceeccC-------------------------C----CcccceeeHHHHHHHHHhCCCCcCeEEE
Q 008205 469 GRHLRIGVPSQVIYPEFVAQGK-------------------------G----TDKFSGYCIDVFTAVLELLPYAVPYKLV 519 (574)
Q Consensus 469 ~~~~~v~~~~~~~~~~~~~~~~-------------------------g----~~~~~G~~idl~~~~~~~l~f~~~y~~~ 519 (574)
..||+|+|..|.||+....++. . ..||.||||||||+||+.++|+ |+++
T Consensus 410 ~~HL~VvTLeE~PFVive~vDP~t~~C~~ntvpc~s~~~~t~ss~~~~~~tvKkCCkGfCIDiLkKlA~~v~Ft--YDLY 487 (1258)
T KOG1053|consen 410 KLHLTVVTLEERPFVIVEDVDPLTQTCVRNTVPCRSQLNSTFSSGDEANRTVKKCCKGFCIDILKKLARDVKFT--YDLY 487 (1258)
T ss_pred cceeEEEEeccCCeEEEecCCCCcCcCCCCCCcchhhhhhccCCCccCCchHHhhhhhhhHHHHHHHHhhcCcc--eEEE
Confidence 4689999988888865543311 0 2389999999999999999999 9999
Q ss_pred ECCCCC----CCCChHHHHHHhhhcccccccccccceeeeEEEEeeCc----eeeecccccc
Q 008205 520 PFGDGH----NSPKRFDLLRLVSEEVSMKRKKIFFNLVILFAILANGG----FLVPCRSMTL 573 (574)
Q Consensus 520 ~~~dg~----~~~~~~gli~~l~~~~~d~~~~~~~~~~~~~~~~~~~~----~~v~f~~~~~ 573 (574)
+|.||| .||.||||||+|+.++|||| |+++|||+||+ |+|||.+..+
T Consensus 488 lVtnGKhGkk~ng~WnGmIGev~~~rA~MA-------VgSltINeeRSevVDFSvPFveTgI 542 (1258)
T KOG1053|consen 488 LVTNGKHGKKINGVWNGMIGEVVYQRADMA-------VGSLTINEERSEVVDFSVPFVETGI 542 (1258)
T ss_pred EecCCcccceecCcchhhHHHHHhhhhhee-------eeeeEechhhhccccccccccccce
Confidence 999998 89999999999999999999 99999999997 8889887653
No 23
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G. This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.
Probab=100.00 E-value=8.1e-45 Score=370.42 Aligned_cols=360 Identities=17% Similarity=0.283 Sum_probs=283.5
Q ss_pred EEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChHH
Q 008205 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 109 (574)
+||++.|.+ ...+.....|+++|+++||+++++++|++|++++.|++|++..++..+|+++.+ +|.+||||.||..
T Consensus 1 ~vg~~~p~~~~~~~~~~~~~~a~~lAi~~IN~~~~~l~~~~l~~~~~D~~~~~~~a~~~~~~l~~~~~v~aiiGp~~S~~ 80 (391)
T cd06372 1 TVGFQAPWNISHPFSAQRLGAALQIAMDKVNSDPVYLGNYSMEFTYTNSTCSAKESLAGFIDQVQKEHISALFGPACPEA 80 (391)
T ss_pred CceeeccccccCchhhhhHHHHHHHHHHHHhcCCCCCCCceEEEEEecCCCCccHHHHHHHHHHHhcCceEEECCCCCcH
Confidence 489999876 334566779999999999999999999999999999999999999999999875 9999999999999
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC---CC--cchHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD---HG--RNGIA 183 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~---~g--~~~~~ 183 (574)
+.+++++++.++||+|+++++++.+++ ..||+++|+.|++..++.++++++++|+|++|++||++++ ++ ....+
T Consensus 81 ~~av~~va~~~~iP~is~~s~s~~ls~~~~~~~~~r~~p~~~~~~~a~~~l~~~~~w~~vaii~~~~~~~~~~~~~~~~~ 160 (391)
T cd06372 81 AEVTGLLASQWNIPMFGFVGQTAKLDNRFLYDTYVKLVPPKQKIGEVLQKSLQHFGWKHIGLFGGSSRDSSWDEVDELWK 160 (391)
T ss_pred HHHHHHHHhccCccEEEeecCCccccccccCCceEEecCchhhHHHHHHHHHHHCCCeEEEEEEeccccchhhhHHHHHH
Confidence 999999999999999999888998987 5789999999999999999999999999999999996532 22 11234
Q ss_pred HHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCc----
Q 008205 184 ALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDW---- 259 (574)
Q Consensus 184 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~---- 259 (574)
.+.+.++ .++++.....++ .+..++...+.+.+..++|+||+++..+.+..++++|.++||..++|+||++.+
T Consensus 161 ~~~~~~~-~~~~i~~~~~~~--~~~~d~~~~~l~~~~~~~~vii~~~~~~~~~~i~~~a~~~g~~~~~y~~i~~~~~~~~ 237 (391)
T cd06372 161 AVENQLK-FHFNITATVRYS--SSNPDLLQEKLRYISSVARVIILICSSEDAKAILQAAEKLGLMKGKFVFFLLQQFEDN 237 (391)
T ss_pred HHHHHHh-hCEEEEEEEecC--CCChHHHHHHHHhhhccceEEEEEcChHHHHHHHHHHHHcCCCCCCEEEEEehhhcCc
Confidence 4455553 578887776665 234566655555556889999999999999999999999999888899999542
Q ss_pred -cccccCCCCcCChhhhhhccceEEEEEecCC-ChHHHHHHHHHHHhhccCCC----CCCCCCChhHHHHHHHHHHHHHH
Q 008205 260 -LSSILDTDSQLHSEKMDDIQGVLTLRMYTQS-SEEKRKFVTRWRHLTRRNTL----NGPIGLNSFGLYAYDTLWLLAHA 333 (574)
Q Consensus 260 -~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~----~~~~~~~~~~~~~yDav~~~a~A 333 (574)
|...... .......+...|++++.+..+. .+..++|.++|++++...+. ........+++++||||+++|+|
T Consensus 238 ~w~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~f~~~~~~~~~~~p~~~~~~~~~~~~~~a~~~yDav~~~A~A 315 (391)
T cd06372 238 FWKEVLTD--DQVQHLPKVYESVFLIAPSSYGGYSGGYEFRKQVYQKLKRPPFQSSLSSEEQVSPYSAYLHDAVLLYALA 315 (391)
T ss_pred cccccCCC--cchHHHHHHHhhEEEEecCCCCCCcchhHHHHHHHHHHhcCCccccccccccchHHHHHHHHHHHHHHHH
Confidence 2211110 0011233467788877765532 34567788888776542221 11113467899999999999999
Q ss_pred HHHHhhcCCCccccCCcccccccCCCcccccccccCchHHHHHHHH---hcccccccccEEEcCCCCCCCCcEEEEEeec
Q 008205 334 IGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNIL---QVNMTGVTGPIKFTSDRDLINPAYEVINVIG 410 (574)
Q Consensus 334 l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~---~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~ 410 (574)
++++++++.. |.+|..|.++|+ +++|+|+||+|.||++|+|. ..|.|++++.
T Consensus 316 l~~~~~~g~~------------------------~~~g~~l~~~l~~~~~~~f~G~tG~v~fd~~G~r~-~~y~i~~~~~ 370 (391)
T cd06372 316 VKEMLKAGKD------------------------FRNGRQLVSTLRGANQVELQGITGLVLLDEQGKRQ-MDYSVYALQK 370 (391)
T ss_pred HHHHHhcCCC------------------------CCCHHHHHHHHhhccCceEeccceeEEECCCCCcc-eeEEEEeccc
Confidence 9998765421 336999999999 68999999999999999984 7999999985
Q ss_pred --C--eEEEEEEeeCCC
Q 008205 411 --T--GSRRIGYWSNHS 423 (574)
Q Consensus 411 --~--~~~~VG~w~~~~ 423 (574)
. .+++||+|+..+
T Consensus 371 ~~~~~~~~~vg~~~~~~ 387 (391)
T cd06372 371 SGNSSLFLPFLHYDSHQ 387 (391)
T ss_pred cCCccceeeEEEecchh
Confidence 2 479999998743
No 24
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=100.00 E-value=3.7e-45 Score=374.45 Aligned_cols=362 Identities=17% Similarity=0.232 Sum_probs=286.8
Q ss_pred EEEEEeccCCc---cc-hhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHH-----HHHHH-hHhcCcEEEEc
Q 008205 34 NIGAVFALNST---IG-KVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGM-----VEALT-LLENETVAIIG 103 (574)
Q Consensus 34 ~IG~l~~~~~~---~g-~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~-----~~~~~-l~~~~v~aiiG 103 (574)
+||+++|++.. .| .....|+++|+++||+++++|+|++|++++.|+++++..+. ..+.+ ...+++.+|||
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~~a~~lAve~IN~~~gil~g~~l~~~~~D~~~~~~~c~~~~~~~~~~~~~~~~~v~aiiG 80 (405)
T cd06385 1 TLAVILPLTNTSYPWAWPRVGPALERAIDRVNADPDLLPGLHLQYVLGSSENKEGVCSDSAAPLVAVDLKFTHNPWAFIG 80 (405)
T ss_pred CeeEECCCCCCcCccchhhhHHHHHHHHHHHhcCCCCCCCceEEEEEccccccCCCCccccchHHHHHHHHhcCCcEEEC
Confidence 59999998733 34 67889999999999999999999999999999866554322 22222 23569999999
Q ss_pred CCChHHHHHHHHhhccCCccEEecccCCCCcCC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEE-EEEEcCCC-Ccc
Q 008205 104 PQFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVI-ALYVDDDH-GRN 180 (574)
Q Consensus 104 p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~-ii~~~~~~-g~~ 180 (574)
|.||..+.+++++++.++||+|+++++++.+++ ..|||+||+.|++..++.++++++++|+|++++ ++|.++.+ +..
T Consensus 81 p~~S~~~~~va~~a~~~~iP~Is~~a~~~~l~~~~~~~~~~R~~p~~~~~~~a~~~~~~~~~w~~va~ii~~~~~~~~~~ 160 (405)
T cd06385 81 PGCDYTASPVARFTTHWDVPLVTAGAPALGFGVKDEYATITRTGPTHKKLGEFVLHIHQHFGWRSHAMLIYSDNKVDDRP 160 (405)
T ss_pred CCccchHHHHHHHHhccCCcEEccccChhhcCCcccCcceEEecCchHHHHHHHHHHHHhCCCeEEEEEEEecCcccccc
Confidence 999999999999999999999999999888887 579999999999999999999999999999998 56655433 232
Q ss_pred ---hHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEe
Q 008205 181 ---GIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVT 257 (574)
Q Consensus 181 ---~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~ 257 (574)
..+.+.+.+++.|++|......+ .+..++..+|+++++.. |+||+++..+.+..++++|.++||+.++|+||++
T Consensus 161 ~~~~~~~l~~~~~~~gi~v~~~~~~~--~~~~d~~~~l~~ik~~~-~iii~~~~~~~~~~i~~~a~~~g~~~~~y~~i~~ 237 (405)
T cd06385 161 CYFAMEGLYMELKKNNITVVDLVFEE--DDLINYTTLLQDIKQKG-RVIYVCCSPDIFRRLMLQFWREGLPSEDYVFFYI 237 (405)
T ss_pred hHHHHHHHHHHHHhCCeEEEEeeccC--CchhhHHHHHHHHhhcc-eEEEEeCCHHHHHHHHHHHHHcCCCCCcEEEEEe
Confidence 46889999999999998775332 24678999999998755 9999999999999999999999999999999998
Q ss_pred CccccccCC---------CCcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhccCCCCC--CCCCChhHHHHHHH
Q 008205 258 DWLSSILDT---------DSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNG--PIGLNSFGLYAYDT 326 (574)
Q Consensus 258 ~~~~~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~--~~~~~~~~~~~yDa 326 (574)
+++....+. .+..+.....++++++......+.++.+++|.++|+++.....+.+ ...++.+++++|||
T Consensus 238 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~a~~~v~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~aa~~YDa 317 (405)
T cd06385 238 DLFGASLQGPDPKRPWYRGDADDAAAREAFQSVKILTYKEPQNPEYKEFLSDLKTDAKEMFNFTVEDSLMNIIAGGFYDG 317 (405)
T ss_pred ecchhhccCCCCCCCCCCCCcccHHHHHhhheeEEEeCCCCCChhHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHHH
Confidence 764322111 0111123345678888877666777889999999987532111011 11256788999999
Q ss_pred HHHHHHHHHHHhhcCCCccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEE
Q 008205 327 LWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVI 406 (574)
Q Consensus 327 v~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~ 406 (574)
|++++.|++++.+.+.. |.+|..|.++|++++|+|++|+|.||++|+|. ..|.++
T Consensus 318 v~l~a~Al~~~~~~~~~------------------------~~~g~~i~~~l~~~~f~G~tG~v~fd~~G~r~-~~~~~~ 372 (405)
T cd06385 318 VMLYAHALNETMAKGGT------------------------RPPGTAITQRMWNRTFYGVTGFVKIDDNGDRE-TDFALW 372 (405)
T ss_pred HHHHHHHHHHHHhcCCC------------------------CCCHHHHHHHhhCceEeeceeEEEEcCCCCEe-ceeEEE
Confidence 99999999998665321 33699999999999999999999999999985 678887
Q ss_pred Ee---ecCeEEEEEEeeCCC
Q 008205 407 NV---IGTGSRRIGYWSNHS 423 (574)
Q Consensus 407 ~~---~~~~~~~VG~w~~~~ 423 (574)
++ ++++++.||.|+...
T Consensus 373 ~~~~~~~g~~~~v~~~~~~~ 392 (405)
T cd06385 373 DMTDTESGDFQVVSVYNGTQ 392 (405)
T ss_pred EccCCCCCcEEEEEEEcccC
Confidence 65 467899999998643
No 25
>KOG1056 consensus Glutamate-gated metabotropic ion channel receptor subunit GRM2 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-45 Score=377.90 Aligned_cols=398 Identities=23% Similarity=0.412 Sum_probs=333.1
Q ss_pred CCCCCCeEEEEEEeccCC-------------ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHH
Q 008205 26 VSTIPPVLNIGAVFALNS-------------TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALT 92 (574)
Q Consensus 26 ~~~~~~~i~IG~l~~~~~-------------~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~ 92 (574)
....+++|.||++||.+. ..|.+...|+.+|+|+||+ +.+|||+||++.++|+|..+..|.++..+
T Consensus 25 ~~~~~gdi~lgglFpvh~k~~~~~~cg~~~~~~gi~r~eAml~al~~iN~-~~lLp~~kLG~~i~DTCs~~t~aleqsl~ 103 (878)
T KOG1056|consen 25 VARIPGDIILGGLFPVHEKGGGAPQCGRIREPRGIQRLEAMLFALDEINN-PDLLPNIKLGARILDTCSRSTYALEQSLS 103 (878)
T ss_pred eccCCCCeEEcceeeecccCCCCCcccccccchhHHHHHHHHHHHHHhcC-cccCCCceeeeeEeeccCCcHHHHHhhHH
Confidence 356789999999999982 2355678999999999999 99999999999999999999999999888
Q ss_pred hHhc-----------------CcEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCC-CCCCceEEecCChHHHHH
Q 008205 93 LLEN-----------------ETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMA 154 (574)
Q Consensus 93 l~~~-----------------~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ 154 (574)
++++ .|.++|||+.|+.+.+++.+...++||||+|+++++.|++ .+|+||.|++|+|..|++
T Consensus 104 Fv~~~~~~~~~e~~c~~g~sp~v~~VIG~s~Ssvsi~vanlLrlf~ipQisyaSts~~LSdk~ry~~F~RtVP~D~~Qa~ 183 (878)
T KOG1056|consen 104 FVRASLTSDDSEVRCPDGYSPPVVAVIGPSYSSVSIAVANLLRLFLIPQISYASTSPDLSDKTRYDYFLRTVPSDVFQAQ 183 (878)
T ss_pred HHHhcccCCCcceecCCCCCCceeEEeCCCCchHHHHHHHHHHhhcCceeccccCCcccccchhhhceeeecCChHHHHH
Confidence 8753 5899999999999999999999999999999999999999 589999999999999999
Q ss_pred HHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc-CCCeEEEEEeChH
Q 008205 155 AIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-MMSRILILHTYDI 233 (574)
Q Consensus 155 ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~-~~~~viil~~~~~ 233 (574)
|+++++++|+|++|..++++++||+.+.++|++..+.+|+||...+.++....+..+..+++++.. .++++||+++..+
T Consensus 184 Am~~il~~f~W~yVstv~s~~dYGE~Gieaf~~~a~~~~iCIa~s~ki~~~~~~~~~~~~l~kl~~~~~a~vvV~F~~~~ 263 (878)
T KOG1056|consen 184 AMVDILKKFNWNYVSTVASEGDYGESGIEAFKEEAAERGICIAFSEKIYQLSIEQEFDCVLRKLLETPNARVVVVFCRGE 263 (878)
T ss_pred HHHHHHHHhCeeEeeehhcCccchhhhHHHHHHhHHhcCceEEehhhcccccchhHHHHHHHHHhhcCCCeEEEEecCcc
Confidence 999999999999999999999999999999999999999999999777655677889999999877 7999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCcCChhhhhhccceEEEEEecCCChHHHHHHHH-------------
Q 008205 234 WGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTR------------- 300 (574)
Q Consensus 234 ~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~------------- 300 (574)
+++.++++|.++++.+ .++||.++.|....+.. .......+|.+++.+..+..+.+++|.+.
T Consensus 264 ~~r~~~~aa~~~n~~g-~~~wiaSd~W~~~~~~~----~~~e~~a~g~i~i~l~~~~v~~F~~y~~s~~p~nn~~n~w~~ 338 (878)
T KOG1056|consen 264 DARRLLKAARRANLTG-EFLWIASDGWASQNSPT----EAPEREAEGAITIKLASPQVPGFDRYFQSLHPENNRRNPWFA 338 (878)
T ss_pred hHHHHHHHHHHhCCCc-ceEEEecchhhccCChh----hhhhhhhceeEEEEecCCcchhHHHHHHhcCccccccCcccc
Confidence 9999999999999865 69999999887654432 22234788999999988877777776654
Q ss_pred --HHHhhc---------------cCCCCCCC------CCChhHHHHHHHHHHHHHHHHHHhhcCCCccccCCcccccccC
Q 008205 301 --WRHLTR---------------RNTLNGPI------GLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSR 357 (574)
Q Consensus 301 --~~~~~~---------------~~~~~~~~------~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~ 357 (574)
|+..+. .|+..+.. .-......++|||+++|+||+.+.++... +
T Consensus 339 e~w~~~f~C~l~~~~~~~~~~~~~Ct~~e~~~~~~~~~q~~k~~~Vi~aVya~A~aLh~m~~~lc~-------------~ 405 (878)
T KOG1056|consen 339 EFWEDKFNCSLPNSAFKNENLIRLCTAVERITLDSAYEQDSKVQFVIDAVYAMAHALHNMHQDLCP-------------G 405 (878)
T ss_pred hhhhhcccCCCCcccccchhhhhhcccchhhccccchhhhcccccHHHHHHHHHHHHHHHHHhhcC-------------C
Confidence 333331 12222100 01123467899999999999999876321 2
Q ss_pred CCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeecC----eEEEEEEeeCCCCCcccCcccc
Q 008205 358 GDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGT----GSRRIGYWSNHSGLSVVPPEAL 433 (574)
Q Consensus 358 ~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~~----~~~~VG~w~~~~gl~~~~~~~~ 433 (574)
....|+..... +|+.|.+++++++|.|..|.+.||++||. ...|+|++++.. .+..||.|+....|+
T Consensus 406 ~~~~C~~m~~~-dg~~L~~~l~~vnF~~~~~~v~Fd~~gD~-~~~y~I~~~~~~~~~~~y~~vg~w~~~~~l~------- 476 (878)
T KOG1056|consen 406 TSGLCSAMKAI-DGSLLLKYLLNVNFTGPAGSVRFDENGDG-PGRYDILNYQLTNGSYTYKEVGYWSEGLSLN------- 476 (878)
T ss_pred ccccCcCcccc-CHHHHHhhhheeEEecCCCceeecCCCCC-ccceeEEEeeccCCCccceeeeeeccccccc-------
Confidence 24458887776 59999999999999999999999999994 589999999953 469999998765332
Q ss_pred cCCCCCCCCCccccceeecCCCCccCCCcee
Q 008205 434 YKEPSNRSASSQHLYSAVWPGQTTQKPRGWV 464 (574)
Q Consensus 434 ~~~~~~~~~~~~~~~~i~w~~~~~~~p~~~~ 464 (574)
...+.|.++....|.|.|
T Consensus 477 -------------i~~~~w~~~~~~v~~S~C 494 (878)
T KOG1056|consen 477 -------------IEDLDWTTKPSGVPKSVC 494 (878)
T ss_pred -------------ceeeeeccCCCCCccccc
Confidence 246789988888999988
No 26
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.
Probab=100.00 E-value=7.4e-45 Score=371.35 Aligned_cols=351 Identities=19% Similarity=0.300 Sum_probs=289.2
Q ss_pred EEEEEEeccCC----ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChH
Q 008205 33 LNIGAVFALNS----TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSV 108 (574)
Q Consensus 33 i~IG~l~~~~~----~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~ 108 (574)
|+||++.|++. ..|.....|+++|+++||+++++++|++|+++++|++|++..+++.+|+++.++|.+||||.+|.
T Consensus 1 i~iG~~~pltG~~~a~~G~~~~~a~~lAv~~IN~~ggil~g~~l~l~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~S~ 80 (404)
T cd06370 1 IKVGYLAEWTTDRTDRLGLPISGALTLAVEDVNADPNLLPGYKLQFEWVDTHGDEVLSIRAVSDWWKRGVVAFIGPECTC 80 (404)
T ss_pred CeeEecccccCCccccccccHHHHHHHHHHHHhCCCCCCCCCEEEEEEEecCCChHHHHHHHHHHHhcCceEEECCCchh
Confidence 68999999973 45888999999999999999999889999999999999999999999999999999999999985
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHH
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGD 187 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~ 187 (574)
. +++.++..++||+|+++++++.+++ ..||+|+|+.|++..++.++++++++++|+++++||+++++|....+.+++
T Consensus 81 ~--~~a~i~~~~~iP~Is~~a~~~~l~~~~~~~~f~r~~~~~~~~~~a~~~~~~~~~w~~vaii~~~~~~g~~~~~~~~~ 158 (404)
T cd06370 81 T--TEARLAAAWNLPMISYKCDEEPVSDKSKYPTFARTVPPSIQVVKSVIALLKHFNWNKFSVVYENDSKYSSVFETLKE 158 (404)
T ss_pred H--HHHHHHhhcCCcEEecccCCccccccccCCCeEEcCCCHHHHHHHHHHHHHHCCCcEEEEEEecCcccHHHHHHHHH
Confidence 4 4568999999999999999888887 478999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcEEEEEeecCCCC-----ChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCC-CCCeEEEEeCccc
Q 008205 188 KLAEKRCRLSHKVPLSPKG-----SRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMM-ESGYVWIVTDWLS 261 (574)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~-----~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~-~~~~~~i~~~~~~ 261 (574)
.+++.|++|...+.++... ...++..++++++.. ++++|+++...++..++++|.++||. ..+|+||..+...
T Consensus 159 ~~~~~g~~iv~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~~~~~~~~~~~l~qa~~~g~~~~~~y~~i~~~~~~ 237 (404)
T cd06370 159 EAELRNITISHVEYYADFYPPDPIMDNPFEDIIQRTKET-TRIYVFIGEANELRQFLMSMLDEGLLESGDYMVLGVDIEY 237 (404)
T ss_pred HHHHcCCEEEEEEEECCCCCchhhhHHHHHHHHHhccCC-CEEEEEEcCHHHHHHHHHHHHHcCCCCCCcEEEEEEchhh
Confidence 9999999999887776431 146888889888764 67788888888899999999999998 6889999876321
Q ss_pred ccc---------------CCCCcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhccCCCC-------CCCCCChh
Q 008205 262 SIL---------------DTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLN-------GPIGLNSF 319 (574)
Q Consensus 262 ~~~---------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~-------~~~~~~~~ 319 (574)
... ............+++|++.+....+ .+.+++|.+.|++.....+.. ....++.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (404)
T cd06370 238 YDRDSQDYYSLHRGFQSREYNRSDDEKALEAMKSVLIIVPTPV-SPDYDSFSIFVRKYNLEPPFNGDLGESELVLEIDIE 316 (404)
T ss_pred ccccchhhhhhhhhhccccccccccHHHHHHhHheEEEecCCC-CchHHHHHHHHHHhccCCCCccccccccccccccee
Confidence 110 0000111234457888888765544 667889999998865321111 12245678
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccc-cEEEcCCCCC
Q 008205 320 GLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTG-PIKFTSDRDL 398 (574)
Q Consensus 320 ~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG-~v~Fd~~G~r 398 (574)
++++|||++++++|++++++++... .+|..|.++|++++|+|+|| +|.||++|+|
T Consensus 317 aa~~yDAv~~~a~Al~~~~~~~~~~------------------------~~g~~i~~~l~~~~f~GvtG~~v~fd~~G~~ 372 (404)
T cd06370 317 AAYLYDAVMLYAKALDETLLEGGDI------------------------YNGTAIVSHILNRTYRSITGFDMYIDENGDA 372 (404)
T ss_pred eehhHHHHHHHHHHHHHHHHhcCCC------------------------CCHHHHHHHHhCcccccccCceEEEcCCCCc
Confidence 8999999999999999987654311 15899999999999999999 8999999998
Q ss_pred CCCcEEEEEeecCe
Q 008205 399 INPAYEVINVIGTG 412 (574)
Q Consensus 399 ~~~~~~i~~~~~~~ 412 (574)
. ..|.|++++++.
T Consensus 373 ~-~~y~v~~~~~~~ 385 (404)
T cd06370 373 E-GNYSVLALQPIP 385 (404)
T ss_pred c-cceEEEEecccc
Confidence 4 789999998753
No 27
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=100.00 E-value=1.2e-44 Score=370.40 Aligned_cols=352 Identities=23% Similarity=0.327 Sum_probs=291.7
Q ss_pred CCCCeEEEEEEeccCC---------------------ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHH
Q 008205 28 TIPPVLNIGAVFALNS---------------------TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLG 86 (574)
Q Consensus 28 ~~~~~i~IG~l~~~~~---------------------~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a 86 (574)
..++++.||++||.+. ..|.....|+++|+++||+++++|+|++|+++++|+|+ +..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~a~~lAv~~IN~~ggil~g~~l~~~~~D~~~-~~~a 80 (410)
T cd06363 2 RLPGDYLLGGLFPLHYATSALPHRRPEPLDCSSYRFNLSGYRLFQAMRFAVEEINNSTSLLPGVTLGYEIFDHCS-DSAN 80 (410)
T ss_pred CCCCCEEEEEEeECcccccccccCCCCCccCccCccCHHHHHHHHHHHHHHHHHhCCCccCCCCeeceEEEecCC-cHHH
Confidence 3578999999999984 12556789999999999999999999999999999976 6668
Q ss_pred HHHHHHhHh----------------cCcEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCC-CCCCceEEecCCh
Q 008205 87 MVEALTLLE----------------NETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSD 149 (574)
Q Consensus 87 ~~~~~~l~~----------------~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~ 149 (574)
++.+.+++. ++|.+||||.+|..+.+++++++.++||+|+++++++.+++ ..+|++||+.|++
T Consensus 81 ~~~~~~li~~~~~~~~~~c~~~~~~~~V~aIiGp~~S~~~~av~~i~~~~~vp~is~~~~~~~lt~~~~~~~~fr~~~~~ 160 (410)
T cd06363 81 FPPTLSLLSVNGSRIEPQCNYTNYQPRVVAVIGPDSSTLALTVAPLFSFFLIPQISYGASSEVLSNKELYPSFLRTVPSD 160 (410)
T ss_pred HHHHHHHHhccCcccCcccccccCCCCeEEEECCCccHHHHHHHHHhcccccccccccccCccccccccCCCeeEecCCc
Confidence 888888874 59999999999999999999999999999999988888886 4789999999999
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCC-CChhhHHHHHHHhhcCCCeEEEE
Q 008205 150 LYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPK-GSRNQIIDTLLTVSSMMSRILIL 228 (574)
Q Consensus 150 ~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~-~~~~~~~~~l~~ik~~~~~viil 228 (574)
..++.++++++++++|++|++||+++++|....+.+++.+++.|+++.....++.. ....|+..++++|+.+++++|++
T Consensus 161 ~~~~~al~~~l~~~~~k~vaii~~~~~~g~~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~~d~~~~l~~i~~~~~dvIil 240 (410)
T cd06363 161 KDQIEAMVQLLQEFGWNWVAFLGSDDEYGRDGLQLFSELIANTGICIAYQGLIPLDTDPETDYQQILKQINQTKVNVIVV 240 (410)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEeCChhHHHHHHHHHHHHHHCCeEEEEEEEecCCCchHHHHHHHHHHHhcCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999988777642 24678999999999999999999
Q ss_pred EeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhccC
Q 008205 229 HTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRN 308 (574)
Q Consensus 229 ~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 308 (574)
.+..+.+..++++|+++||.. ..||.++.+........ ........+++++....+..+.+++|.+.
T Consensus 241 ~~~~~~~~~il~qa~~~g~~~--~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-------- 307 (410)
T cd06363 241 FASRQPAEAFFNSVIQQNLTG--KVWIASEAWSLNDELPS---LPGIRNIGTVLGVAQQTVTIPGFSDFIYS-------- 307 (410)
T ss_pred EcChHHHHHHHHHHHhcCCCC--CEEEEeCcccccccccC---CccceeeccEEEEEeCCCCCccHHHHHHH--------
Confidence 999999999999999999853 47888875432211111 11112344677777766667777777666
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccc
Q 008205 309 TLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTG 388 (574)
Q Consensus 309 ~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG 388 (574)
.++.+||||+++++|+++++.++.. .|.... ..+++.|+++|++++|+|++|
T Consensus 308 ----------~~~~~YDaV~~~a~Al~~a~~~~~~-----------------~~~~~~-~~~~~~l~~~L~~~~~~g~~g 359 (410)
T cd06363 308 ----------FAFSVYAAVYAVAHALHNVLQCGSG-----------------GCPKRV-PVYPWQLLEELKKVNFTLLGQ 359 (410)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHhCCCCC-----------------CCCCCC-CCCHHHHHHHHhccEEecCCc
Confidence 2467999999999999999766431 233211 125888999999999999999
Q ss_pred cEEEcCCCCCCCCcEEEEEeecC----eEEEEEEeeCC
Q 008205 389 PIKFTSDRDLINPAYEVINVIGT----GSRRIGYWSNH 422 (574)
Q Consensus 389 ~v~Fd~~G~r~~~~~~i~~~~~~----~~~~VG~w~~~ 422 (574)
++.||++|++ ...++|++++.. ++++||+|++.
T Consensus 360 ~i~fd~~G~~-~~~~~i~~~~~~~~~~~~~~vG~~~~~ 396 (410)
T cd06363 360 TVRFDENGDP-NFGYDIVVWWWDNSSGTFEEVGSYSFY 396 (410)
T ss_pred EEEeCCCCCC-ccceEEEEEEEcCCceeEEEEEEEECC
Confidence 9999999985 467999999532 58999999874
No 28
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=100.00 E-value=1e-44 Score=364.73 Aligned_cols=343 Identities=44% Similarity=0.735 Sum_probs=298.6
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChHHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~~~ 111 (574)
+||+++|++ +..|.....|+++|+++||+++++++|++|+++++|+++++..+++.+++++.+ +|.+||||.+|..+.
T Consensus 1 ~IG~~~p~sGa~~G~~~~~~~~lAv~~iN~~gg~~~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~~v~~viG~~~s~~~~ 80 (350)
T cd06366 1 RIGAIFDLSGSWIGKAALPAIEMALEDVNADNSILPGYRLVLHVRDSKCDPVQAASAALDLLENKPVVAIIGPQCSSVAE 80 (350)
T ss_pred CEEEEEecCCCcccHHHHHHHHHHHHHHhcCCCcCCCcEEEEEecCCCCCHHHHHHHHHHHhccCCceEEECCCcHHHHH
Confidence 599999999 888999999999999999999877789999999999999999999999999987 999999999999999
Q ss_pred HHHHhhccCCccEEecccCCCCcCC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHh
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLA 190 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~ 190 (574)
++++++..++||+|+++++++.+++ ..+||+||+.|++..++.++++++++++|+++++||+++++|....+.+++.++
T Consensus 81 a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~~~~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~ 160 (350)
T cd06366 81 FVAEVANEWNVPVLSFAATSPSLSSRLQYPYFFRTTPSDSSQNPAIAALLKKFGWRRVATIYEDDDYGSGGLPDLVDALQ 160 (350)
T ss_pred HHHHHhhcCCeeEEeccCCCccccccccCCceEEcccchHhHHHHHHHHHHHCCCcEEEEEEEcCcccchhHHHHHHHHH
Confidence 9999999999999999988888855 568999999999999999999999999999999999999999999999999999
Q ss_pred hcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCC-CCc
Q 008205 191 EKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDT-DSQ 269 (574)
Q Consensus 191 ~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~-~~~ 269 (574)
+.|++|.....++...+..|+..++++|+..++++|++++...++..++++++++||....|+||.++.+...++. ...
T Consensus 161 ~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~dvvi~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~ 240 (350)
T cd06366 161 EAGIEISYRAAFPPSANDDDITDALKKLKEKDSRVIVVHFSPDLARRVFCEAYKLGMMGKGYVWILTDWLSSNWWSSSDC 240 (350)
T ss_pred HcCCEEEEEeccCCCCChhHHHHHHHHHhcCCCeEEEEECChHHHHHHHHHHHHcCCcCCCEEEEECcchhhhhccCCCC
Confidence 9999999887776432367999999999999999999999999999999999999998888999998865543210 000
Q ss_pred CChhhhhhccceEEEEEecCC-ChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCccccC
Q 008205 270 LHSEKMDDIQGVLTLRMYTQS-SEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSE 348 (574)
Q Consensus 270 ~~~~~~~~~~g~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~ 348 (574)
..+......+|++++....+. .+.+++|.++|+++++..+.. ...++.+++.+|||+++
T Consensus 241 ~~~~~~~~~~gv~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~-~~~p~~~a~~~YDav~~------------------- 300 (350)
T cd06366 241 TDEEMLEAMQGVIGVRSYVPNSSMTLQEFTSRWRKRFGNENPE-LTEPSIYALYAYDAVWA------------------- 300 (350)
T ss_pred ChHHHHHhhceEEEEeecccccCccHHHHHHHHHHHhcccCcC-cCCCCcccchhhhheee-------------------
Confidence 113345678899999988777 788999999999887521110 12466788999999888
Q ss_pred CcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeecCeEEEEEEeeCCCCCcc
Q 008205 349 DSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLSV 427 (574)
Q Consensus 349 ~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~~~~~~VG~w~~~~gl~~ 427 (574)
+++|+|++|+|+||++|++.+..|+++++.++++++||+|++..|++.
T Consensus 301 -------------------------------~~~~~G~~G~v~fd~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~ 348 (350)
T cd06366 301 -------------------------------STNFNGLSGPVQFDGGRRLASPAFEIINIIGKGYRKIGFWSSESGLSV 348 (350)
T ss_pred -------------------------------eceEEeeeeeEEEcCCCccCCcceEEEEecCCceEEEEEEeCCCCccc
Confidence 126899999999999999888999999999999999999999888653
No 29
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=100.00 E-value=2.5e-44 Score=367.45 Aligned_cols=363 Identities=20% Similarity=0.279 Sum_probs=294.5
Q ss_pred EEEEEeccCC----ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC----CHHHHHHHHHHhH-hcCcEEEEcC
Q 008205 34 NIGAVFALNS----TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNY----SRFLGMVEALTLL-ENETVAIIGP 104 (574)
Q Consensus 34 ~IG~l~~~~~----~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~----~~~~a~~~~~~l~-~~~v~aiiGp 104 (574)
+||+++|.+. ..|.....|+++|+++||+++++++|++|+++++|+++ ++..++..+.+++ +++|.+||||
T Consensus 1 ~~g~l~p~~~~~~~~~~~~~~~a~~lAve~IN~~gg~l~G~~l~~~~~D~~~~~~~~~~~a~~~a~~~~~~~~v~aiiGp 80 (396)
T cd06373 1 TLAVLLPKNNTSYPWSLPRVGPAIDIAVERVNADPGLLPGHNITLVFEDSECKCGCSESEAPLVAVDLYFQHKPDAFLGP 80 (396)
T ss_pred CeEEEcCCCCCCcccchhhhhhHHHHHHHHHhcCCCcCCCeEEEEEEecCccccccchhhhHHHHHHHHhccCCeEEECC
Confidence 5899999983 34567889999999999999988899999999999998 8888888888776 5699999999
Q ss_pred CChHHHHHHHHhhccCCccEEecccCCCCcCC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCC----c
Q 008205 105 QFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHG----R 179 (574)
Q Consensus 105 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g----~ 179 (574)
.||..+.++++++..++||+|+++++++.+++ ..|||+||+.|++..++.++++++++++|+++++||++++++ .
T Consensus 81 ~~S~~~~av~~~~~~~~ip~Is~~as~~~lt~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~vaii~~~~~~~~~~~~ 160 (396)
T cd06373 81 GCEYAAAPVARFAAHWNVPVLTAGAPAAGFSDKSEYSTLTRTGPSYTKLGEFVLALHEHFNWSRAALLYHDDKNDDRPCY 160 (396)
T ss_pred CccchhHHHHHHHhcCCCceECccCCccccccchhcCceeeccccHHHHHHHHHHHHHHcCCeEEEEEEECCCCCcchHH
Confidence 99999999999999999999999998888887 578999999999999999999999999999999999887764 4
Q ss_pred chHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCc
Q 008205 180 NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDW 259 (574)
Q Consensus 180 ~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~ 259 (574)
...+.+.+.+++.|+++.... +.......++..+|++++... ++|++++....+..++++|+++||...+|+||..+.
T Consensus 161 ~~~~~~~~~~~~~g~~v~~~~-~~~~~~~~d~~~~l~~ik~~~-~vii~~~~~~~~~~~~~qa~~~g~~~~~yv~i~~~~ 238 (396)
T cd06373 161 FTLEGVYTVLKEENITVSDFP-FDEDKELDDYKELLRDISKKG-RVVIMCASPDTVREIMLAAHRLGLTSGEYVFFNIDL 238 (396)
T ss_pred HHHHHHHHHHhhcCceeeEEe-ecCCccccCHHHHHHHHHhcC-cEEEEecCHHHHHHHHHHHHHcCCCCCcEEEEEEcc
Confidence 467888899999999987543 432111478999999999866 999999999999999999999999999999998764
Q ss_pred cccccCC--------CCcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhcc-C-CCCCCCCCChhHHHHHHHHHH
Q 008205 260 LSSILDT--------DSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRR-N-TLNGPIGLNSFGLYAYDTLWL 329 (574)
Q Consensus 260 ~~~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~-~-~~~~~~~~~~~~~~~yDav~~ 329 (574)
....... .........+...|++++....+..+.+++|.++|+++... + ...+...+..+++.+|||+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~ 318 (396)
T cd06373 239 FGSSLYGGGPWWWERGDEDDEKAKEAYQALMTITLREPDNPEYKEFSLEVKERAKKKFNTTSDDSLVNFFAGAFYDAVLL 318 (396)
T ss_pred chhhhccCCCCcCCCCCcccHHHHHHHHHheEEecCCCCChHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHHHH
Confidence 4221100 00011223345678888888777778899999999875321 0 011112356788999999999
Q ss_pred HHHHHHHHhhcCCCccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEe-
Q 008205 330 LAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINV- 408 (574)
Q Consensus 330 ~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~- 408 (574)
+++||+++.+++.+ +.+|..|+++|++++|+|++|++.||++|+|. ..|.|+.+
T Consensus 319 ~a~Al~~~~~~~~~------------------------~~~~~~i~~~l~~~~f~G~tG~v~fd~~G~~~-~~~~v~~~~ 373 (396)
T cd06373 319 YALALNETLAEGGD------------------------PRDGTNITRRMWNRTFEGITGNVSIDENGDRE-SDFSLWDMT 373 (396)
T ss_pred HHHHHHHHHhccCC------------------------CCChHHHHHHhcCCceecccCceEeecCCccc-ceeeeeecc
Confidence 99999998654321 12589999999999999999999999999975 67888765
Q ss_pred --ecCeEEEEEEeeCCC
Q 008205 409 --IGTGSRRIGYWSNHS 423 (574)
Q Consensus 409 --~~~~~~~VG~w~~~~ 423 (574)
+++.++.+|++++.+
T Consensus 374 ~~~~g~~~~~~~~~~~~ 390 (396)
T cd06373 374 DTETGTFEVVANYNGSN 390 (396)
T ss_pred CCCCceEEEEeeccccc
Confidence 467789999998753
No 30
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=100.00 E-value=1.4e-44 Score=360.10 Aligned_cols=321 Identities=21% Similarity=0.321 Sum_probs=272.2
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC-CCHHHHHHHHHHhHhcCcEEEEcCCChHHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTN-YSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~-~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 112 (574)
+||++|++ ..|.....|+++|+|+||+++++|+|++|++++.|++ +++..+.+.+|++++++|.+||||.+|..+.+
T Consensus 1 ~iG~i~~~--~~g~~~~~a~~lAv~~iN~~ggil~g~~l~~~~~d~~~~~~~~a~~~~~~li~~~V~aiiG~~~S~~~~a 78 (327)
T cd06382 1 RIGAIFDD--DDDSGEELAFRYAIDRINREKELLANTTLEYDIKRVKPDDSFETTKKVCDLLQQGVAAIFGPSSSEASSI 78 (327)
T ss_pred CeEEEecC--CCchHHHHHHHHHHHHhcccccccCCceEEEEEEEecCCCcHHHHHHhhhhhhcCcEEEECCCChhHHHH
Confidence 59999997 4578899999999999999999999999999999998 89999999999999889999999999999999
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhc
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEK 192 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~ 192 (574)
++++++.++||+|+++++++.++ .++++||+.|++..++.++++++++++|++++++|+++++ .+.+.+.+++.
T Consensus 79 v~~~~~~~~vP~Is~~~~~~~~~--~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~vavl~~~~~~----~~~l~~~~~~~ 152 (327)
T cd06382 79 VQSICDAKEIPHIQTRWDPEPKS--NRQFTINLYPSNADLSRAYADIVKSFNWKSFTIIYESAEG----LLRLQELLQAF 152 (327)
T ss_pred HHHHHhccCCCceeccCCcCccc--cccceEEeCCCHHHHHHHHHHHHHhcCCcEEEEEecChHH----HHHHHHHHHhh
Confidence 99999999999999877777665 4578999999999999999999999999999999988764 34455666655
Q ss_pred Cc---EEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCc
Q 008205 193 RC---RLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQ 269 (574)
Q Consensus 193 g~---~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~ 269 (574)
+. .+... .++. .. |++.+|.+|++.++++|++.|....+..++++|+++||..+.|+|+++++.....+.
T Consensus 153 ~~~g~~v~~~-~~~~--~~-d~~~~l~~i~~~~~d~vv~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~l--- 225 (327)
T cd06382 153 GISGITITVR-QLDD--DL-DYRPLLKEIKNSGDNRIIIDCSADILIELLKQAQQVGMMSEYYHYIITNLDLHTLDL--- 225 (327)
T ss_pred ccCCCeEEEE-EccC--Cc-cHHHHHHHHHhcCceEEEEECCHHHHHHHHHHHHHhCccccceEEEEecCCccccch---
Confidence 54 44443 4442 33 899999999999999999999999999999999999999999999998876554333
Q ss_pred CChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhcc-CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCccccC
Q 008205 270 LHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRR-NTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSE 348 (574)
Q Consensus 270 ~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~ 348 (574)
........+++++++..++++.+++|.++|+++++. ++..+...++..++.+|||++++
T Consensus 226 --~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~~a~~yDav~~~------------------ 285 (327)
T cd06382 226 --EDYRYSGVNITGFRLVDPDSPEVKEVIRSLELSWDEGCRILPSTGVTTESALMYDAVYLF------------------ 285 (327)
T ss_pred --hhhccCceeEEEEEEecCCchhHHHHHHHHHhhcccccccCCCCCcchhhhhhhceEEEe------------------
Confidence 122234457888888888889999999999998863 22223334667788888886544
Q ss_pred CcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeecCeEEEEEEeeCCCCC
Q 008205 349 DSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGL 425 (574)
Q Consensus 349 ~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~~~~~~VG~w~~~~gl 425 (574)
|+||+|+||++|+|.++.|+|+|++++++++||+|++..||
T Consensus 286 ------------------------------------g~tG~v~f~~~g~r~~~~~~~~~~~~~~~~~vg~w~~~~~~ 326 (327)
T cd06382 286 ------------------------------------GLTGRIEFDSSGQRSNFTLDVIELTESGLRKVGTWNSSEGL 326 (327)
T ss_pred ------------------------------------ecccceeeCCCCCEeeeEEEEEeccccCceEEEEECCCCCc
Confidence 89999999999999999999999999999999999988775
No 31
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=100.00 E-value=4.4e-43 Score=354.62 Aligned_cols=349 Identities=19% Similarity=0.242 Sum_probs=278.5
Q ss_pred EEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHH
Q 008205 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIA 110 (574)
Q Consensus 34 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~ 110 (574)
+||++.|++ +..|.....|+++|+++||+++++++|++|++++.|++|++..++..+.++ .++|.+||||.||..+
T Consensus 1 ~ig~~~p~sg~~~~~g~~~~~a~~lAie~iN~~g~il~g~~l~~~~~d~~~~~~~a~~~~~~~-~~~V~aviGp~~S~~~ 79 (382)
T cd06371 1 KVGVLGPWSCDPIFSKALPDVAARLAVSRINRDPSLSLGYWFDYVLLPEPCETSRALAAFLGY-EGYASAFVGPVNPGYC 79 (382)
T ss_pred CceEecCcccCchhhhhhHHHHHHHHHHHHhCCCCCCCCceEEEEEecCCCChhHHHHHHHcc-cCCceEEECCCCchHH
Confidence 589999986 455677899999999999999999889999999999999977665433322 4699999999999999
Q ss_pred HHHHHhhccCCccEEecccCCCCcCC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHH
Q 008205 111 HLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKL 189 (574)
Q Consensus 111 ~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~ 189 (574)
.+++++++.++||+|+++++++.+++ ..||+|+|+.|++ ..++++++++|+|++|++||++++++....+.+.+.+
T Consensus 80 ~a~a~va~~~~iP~Is~~a~~~~lt~~~~y~~f~r~~~~~---~~~~~~~~~~~~w~~vaii~~~~~~~~~~~~~l~~~l 156 (382)
T cd06371 80 EAAALLAKEWDKALFSWGCVNYELDDVRSYPTFARTLPSP---SRVLFTVLRYFRWAHVAIVSSPQDIWVETAQKLASAL 156 (382)
T ss_pred HHHHHHHHhcCceEEecccCchhhcCcccCCCceecCCCc---HHHHHHHHHHCCCeEEEEEEecccchHHHHHHHHHHH
Confidence 99999999999999999999998887 5789999999986 4678899999999999999999999988999999999
Q ss_pred hhcCcEEEEEeecCCCCChhhHHHHHHHhhcCC-CeEEEEEeCh-----HHHHHHHHHHHHCCCCCCCeEEEEeCccccc
Q 008205 190 AEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMM-SRILILHTYD-----IWGLEVLNAAKHLRMMESGYVWIVTDWLSSI 263 (574)
Q Consensus 190 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~-~~viil~~~~-----~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~ 263 (574)
++.|++|.....++ .+..|+.++|++||+.+ +|+||+++.. ..+..++++|+++||+..+|+||.++.....
T Consensus 157 ~~~gi~v~~~~~~~--~~~~d~~~~L~~lk~~~~~~viv~~~~~~~~~~~~~~~i~~qa~~~Gm~~~~y~~i~~d~~~~~ 234 (382)
T cd06371 157 RAHGLPVGLVTSMG--PDEKGAREALKKVRSADRVRVVIMCMHSVLIGGEEQRLLLETALEMGMTDGRYVFIPYDTLLYS 234 (382)
T ss_pred HHCCCcEEEEEEec--CCHHHHHHHHHHHhcCCCcEEEEEEeeccccCcHHHHHHHHHHHHcCCcCCcEEEEEecccccc
Confidence 99999998877676 35679999999999987 6999987765 6778999999999999999999998743211
Q ss_pred c-----CCCC-cCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhccCCCC-CCCCCChhHHHHHHHHHHHHHHHHH
Q 008205 264 L-----DTDS-QLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLN-GPIGLNSFGLYAYDTLWLLAHAIGA 336 (574)
Q Consensus 264 ~-----~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~yDav~~~a~Al~~ 336 (574)
. .... ..+.+...+.++++.+.+..+..+.++.|.+.|+... .+.. +......+++.+|||+++++.|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~~~~~~~~~~~YDav~~~a~Al~~ 312 (382)
T cd06371 235 LPYRNVSYPALRNNSKLRRAYDAVLTITMDSGEQSFYEAFRAAQERGE--IPSDLEPEQVSPLFGTIYNSIYLLAHAVEN 312 (382)
T ss_pred CCCCCccccCCCCCHHHHHHhHhhEEEEecCCCCcHHHHHHHHHhcCC--CCCCCCccccchhHHHHHHHHHHHHHHHHH
Confidence 1 0000 0123344577888887766544445555665543211 1100 1112345667899999999999999
Q ss_pred HhhcCCCccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeecCeEEEE
Q 008205 337 FFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRI 416 (574)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~~~~~~V 416 (574)
+.+.+.. .+|.+++++|++++|+|++|+|+||++|++ ...|.|+++++.+++-+
T Consensus 313 a~~~g~~-------------------------~d~~~l~~~l~~~~f~GvtG~v~fd~~g~~-~~~~~v~~~~~~~~~~~ 366 (382)
T cd06371 313 ARAAGGG-------------------------VSGANLAQHTRNLEFQGFNQRLRTDSGGGG-QAPYVVLDTDGKGDQLY 366 (382)
T ss_pred HHHhCCC-------------------------ccHHHHHHHHhCccccccceEEEecCCCCc-ccceEEEecCCCCCeee
Confidence 8765432 158999999999999999999999999997 59999999998665443
No 32
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=100.00 E-value=6.7e-43 Score=356.82 Aligned_cols=364 Identities=24% Similarity=0.395 Sum_probs=307.8
Q ss_pred EEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChHH
Q 008205 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 109 (574)
+||+++|++ +..|.....|+++|+|+||+++++++|++|++++.|+++++..+++.+.+++.+ +|.+||||.+|..
T Consensus 1 kvG~~~~~sG~~~~~g~~~~~a~~lAve~iN~~g~~i~g~~l~~~~~D~~~~~~~a~~~a~~l~~~~~v~aiiG~~~s~~ 80 (389)
T cd06352 1 TVGVLLPWNTDYPFSLARVGPAIQLAVERVNADPNLLPGYDFTFVYLDTECSESVALLAAVDLYWEHNVDAFIGPGCPYA 80 (389)
T ss_pred CeEEEcCCCCCCCchhhcchHHHHHHHHHHhcCCCCCCCceEEEEEecCCCchhhhHHHHHHHHhhcCCcEEECCCChhH
Confidence 589999998 556788999999999999999976689999999999999999999999999875 9999999999999
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC-CCcchHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD-HGRNGIAALGD 187 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~-~g~~~~~~l~~ 187 (574)
+.++++++..++||+|++.++++.+++ ..+||+||+.|++..++.++++++++++|++++++++++. +|....+.+.+
T Consensus 81 ~~a~~~~~~~~~ip~Is~~~~~~~~~~~~~~~~~fr~~~~~~~~~~a~~~~l~~~~~~~v~ii~~~~~~~g~~~~~~~~~ 160 (389)
T cd06352 81 CAPVARLAAHWNIPMISWGCVALSLSDKSEYPTLTRTLPPARKLGEAVLALLRWFNWHVAVVVYSDDSENCFFTLEALEA 160 (389)
T ss_pred HHHHHHHHhcCCCCEecccccccccCccccCCceeecCCcHHHHHHHHHHHHHHcCceEEEEEEecCCccHHHHHHHHHH
Confidence 999999999999999999888888876 4789999999999999999999999999999999998887 89999999999
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCC-
Q 008205 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDT- 266 (574)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~- 266 (574)
.+++.|++|.....++...+..++..+++++++.+ ++|++++.+.++..+++++.++||...+|+||..+.+......
T Consensus 161 ~~~~~G~~v~~~~~~~~~~~~~d~~~~l~~i~~~~-~vii~~~~~~~~~~~l~q~~~~g~~~~~~~~i~~~~~~~~~~~~ 239 (389)
T cd06352 161 ALREFNLTVSHVVFMEDNSGAEDLLEILQDIKRRS-RIIIMCGSSEDVRELLLAAHDLGLTSGDYVFILIDLFNYSLPYQ 239 (389)
T ss_pred HHHhcCCeEEEEEEecCCccchhHHHHHHHhhhcc-eEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEEehhccccccC
Confidence 99999999998877763212578999999999887 9999998999999999999999998888999998765543211
Q ss_pred -------CCcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhccCCCC---CCCCCChhHHHHHHHHHHHHHHHHH
Q 008205 267 -------DSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLN---GPIGLNSFGLYAYDTLWLLAHAIGA 336 (574)
Q Consensus 267 -------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~---~~~~~~~~~~~~yDav~~~a~Al~~ 336 (574)
.....+.......|++++.+..+..+.+++|.++|+++++..+.. ....+..+++.+|||++++++|+++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a~Al~~ 319 (389)
T cd06352 240 NSYPWERGDGDDEKAKEAYDAVLTITLRPPDNPEYEEFSEEVKEAAKRPPFNTDAEPEQVSPYAGYLYDAVLLYAHALNE 319 (389)
T ss_pred CCCCcccCCcccHHHHHHHHhheEEEecCCCCchHHHHHHHHHHHHhcccCccCCCccccchhhhhHHHHHHHHHHHHHH
Confidence 011113344677899988887777788999999999887532211 1224567889999999999999999
Q ss_pred HhhcCCCccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeec--CeEE
Q 008205 337 FFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIG--TGSR 414 (574)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~--~~~~ 414 (574)
+..++.. |.++..+.+.|++++|.|++|++.||++|+|. ..|+|+++++ +.+.
T Consensus 320 ~~~~~~~------------------------~~~~~~v~~~l~~~~f~g~~G~v~fd~~G~~~-~~~~v~~~~~~~~~~~ 374 (389)
T cd06352 320 TLAEGGD------------------------YNGGLIITRRMWNRTFSGITGPVTIDENGDRE-GDYSLLDLDSTGGQLE 374 (389)
T ss_pred HHHhCCC------------------------CCchHHHHHHhcCcEEEeeeeeEEEcCCCCee-eeEEEEEecCCCceEE
Confidence 8765321 23688999999999999999999999999986 7899999996 4678
Q ss_pred EEEEeeCCC
Q 008205 415 RIGYWSNHS 423 (574)
Q Consensus 415 ~VG~w~~~~ 423 (574)
.++..+...
T Consensus 375 ~~~~~~~~~ 383 (389)
T cd06352 375 VVYLYDTSS 383 (389)
T ss_pred EEEeccccc
Confidence 888776654
No 33
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=100.00 E-value=9.9e-43 Score=355.33 Aligned_cols=362 Identities=18% Similarity=0.209 Sum_probs=282.6
Q ss_pred EEEEEeccCCc----cchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCH----HHHHHHHHHh-HhcCcEEEEcC
Q 008205 34 NIGAVFALNST----IGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSR----FLGMVEALTL-LENETVAIIGP 104 (574)
Q Consensus 34 ~IG~l~~~~~~----~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~----~~a~~~~~~l-~~~~v~aiiGp 104 (574)
+||+++|.+.. .-.....|+++|+|+||+++++++|++|++.++|+++++ ..+...+..+ +.+++.+||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~a~~lAieeiN~~g~il~g~~l~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~v~aviGp 80 (399)
T cd06384 1 TLAVVLPDNNLKYAWAWPRVGPAIRMAVERIQNKGKLLRGYTITLLNKSSELNGGCSESLAPLHAVDLKLYSDPDVFFGP 80 (399)
T ss_pred CeEEECCCCCCCCeeehhhhHHHHHHHHHHHhccCCcCCCceEEEEEeccCCccccchhhhHHHHHHHHhhcCCCEEECC
Confidence 48889886622 123567899999999999999888999999999986553 3333222222 34688999999
Q ss_pred CChHHHHHHHHhhccCCccEEecccCCCCcCC--CCCCceEEecCChHHHHHHHHHHHHHcCCe-EEEEEEEcCCCC---
Q 008205 105 QFSVIAHLVSHIANEFQVPLLSFAATDPSLSS--LQYPFFVRTTQSDLYQMAAIADIVDYFGWR-NVIALYVDDDHG--- 178 (574)
Q Consensus 105 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~--~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~-~v~ii~~~~~~g--- 178 (574)
.||..+.+++++++.++||+|+++++++.+++ ..||++||+.|++..++.++..++++|+|+ ++++||.++..+
T Consensus 81 ~~S~~~~av~~i~~~~~iP~Is~~at~~~ls~~~~~y~~~fR~~p~~~~~~~~~~~i~~~~~w~~~vaiiy~~~~~~~~~ 160 (399)
T cd06384 81 GCVYPTASVARFATHWRLPLITAGAPAFGFSNKTDEYRTTVRTGPSTTKLGEFVNHLHEHFNWTSRAALLYLDLKTDDRP 160 (399)
T ss_pred CCchHHHHHHHHHhhcCCcEEeeccchhhhccccccCCceEEecCcHHHHHHHHHHHHHhCCCcEEEEEEEecCCccCCc
Confidence 99999999999999999999999999888886 378999999999999999988899999999 688999654221
Q ss_pred -cchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEe
Q 008205 179 -RNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVT 257 (574)
Q Consensus 179 -~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~ 257 (574)
....+.+.+.+++.|++|....... .+..|+.++|+++|. ++|+|++++....+..++++|+++||..++|+||..
T Consensus 161 ~~~~~~~~~~~~~~~gi~v~~~~~~~--~~~~d~~~~l~~ik~-~~~vIi~~~~~~~~~~i~~qa~~~g~~~~~y~~i~~ 237 (399)
T cd06384 161 HYFISEGVFLALQEENANVSAHPYHI--EKNSDIIEIIQFIKQ-NGRIVYICGPLETFLEIMLQAQREGLTPGDYVFFYL 237 (399)
T ss_pred ceEehHHHHHHHHhcCceEEEEEEec--cchhhHHHHHHHHhh-cccEEEEeCCchHHHHHHHHHHHcCCCCCcEEEEEe
Confidence 1135667888888999988765443 356789999999996 899999999999999999999999999999999987
Q ss_pred CccccccC------C----CCcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhccCCCCC--CCCCChhHHHHHH
Q 008205 258 DWLSSILD------T----DSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNG--PIGLNSFGLYAYD 325 (574)
Q Consensus 258 ~~~~~~~~------~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~--~~~~~~~~~~~yD 325 (574)
++....+. . .....+...++.++++++....+..+.+++|.++|+++.....+.+ +...+.+++++||
T Consensus 238 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~p~~~~~~aa~~YD 317 (399)
T cd06384 238 DVFGESLRVKSPRESYKQMNHSSWTVLKEAFKSVFVITYREPENPEYKEFQRELHARAKEDFGVELEPSLMNFIAGCFYD 317 (399)
T ss_pred hhcccccccCCCCccccCCCCcccHHHHHHHhheEEeecCCCCCchHHHHHHHHHHHHhhhcCCCcCcchHhhhhhhhHH
Confidence 75432111 0 0000134445788899888888877889999999987543211111 1123567899999
Q ss_pred HHHHHHHHHHHHhhcCCCccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEE
Q 008205 326 TLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEV 405 (574)
Q Consensus 326 av~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i 405 (574)
||++++.|++++.+.+. .|.+|..|+++|++++|+|++|+|.||++|+|. ..+.+
T Consensus 318 av~l~a~Al~~~~~~~~------------------------~~~~g~~i~~~l~~~~f~GvtG~v~fd~~G~r~-~~~~~ 372 (399)
T cd06384 318 GVMLYAMALNETLAEGG------------------------SQKDGLNITRKMQDRRFWGVTGLVSIDKNNDRD-IDFDL 372 (399)
T ss_pred HHHHHHHHHHHHHhcCC------------------------CCCCcHhHHHHHhCceeecceeEEEECCCCCcc-cceEE
Confidence 99999999999865432 244699999999999999999999999999984 56677
Q ss_pred ---EEeecCeEEEEEEeeCCC
Q 008205 406 ---INVIGTGSRRIGYWSNHS 423 (574)
Q Consensus 406 ---~~~~~~~~~~VG~w~~~~ 423 (574)
.++++++++.||+|+..+
T Consensus 373 ~~~~~~~~g~~~~v~~~~~~~ 393 (399)
T cd06384 373 WAMTDHETGKYEVVAHYNGIT 393 (399)
T ss_pred EEeecCCCCeEEEEEEEcCCC
Confidence 355788999999998743
No 34
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=100.00 E-value=2.8e-42 Score=343.53 Aligned_cols=335 Identities=16% Similarity=0.158 Sum_probs=254.5
Q ss_pred EEEEEeccCCccchhHHHHHHHHH--HHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAV--EDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av--~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~ 111 (574)
+||+||+.++. ....||.+|+ +++|+++++ .+..+.++.+|+.+|++++++++|+++++||.|||||.+|..+.
T Consensus 1 ~IG~if~~~~~---~~~~af~~ala~~~iN~~gg~-~~~~i~~v~~dd~~d~~~a~~~~c~Li~~gV~AI~G~~~s~~~~ 76 (363)
T cd06381 1 HIGAIFSESAL---EDDEVFAVAVIDLNINEQILQ-TEKITLSISFIDLNNHFDAVQEACDLMNQGILALVTSTGCASAI 76 (363)
T ss_pred CeeeeccCCcc---hHHHHHHHHHHHhhccccccC-CccceeeeEeecCCChHHHHHHHHHHHhcCcEEEEecCChhHHH
Confidence 59999998753 3344565555 555665554 35567788899999999999999999999999999999999999
Q ss_pred HHHHhhccCCccEEecccCCC---C-----cCC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchH
Q 008205 112 LVSHIANEFQVPLLSFAATDP---S-----LSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGI 182 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~---~-----ls~-~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~ 182 (574)
+++++|+..+||+|++.+... . +.+ ...+|.|++.|++ .+..++++++++|+|++|+++|++++ |...+
T Consensus 77 av~~i~~~~~IP~Is~~~~~~~~~~~~~~~~~~~~~~~~~f~~rp~~-~~~~ai~~lv~~~~wkkvavly~~d~-g~~~l 154 (363)
T cd06381 77 ALQSLTDAMHIPHLFIQRGYGGSPRTACGLNPSPRGQQYTLALRPPV-RLNDVMLRLVTEWRWQKFVYFYDNDY-DIRGL 154 (363)
T ss_pred HHHHHhhCCCCCEEEeecCcCCCcccccccCCCcccceeEEEEeccH-HHHHHHHHHHHhCCCeEEEEEEECCc-hHHHH
Confidence 999999999999999653211 0 111 1235666777875 68899999999999999999998775 66677
Q ss_pred HHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhh-------cCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEE
Q 008205 183 AALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVS-------SMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWI 255 (574)
Q Consensus 183 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik-------~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i 255 (574)
+.+.+.+++.|+.+.... ...+ ....+..+++.++ ..+.++||++|+++.+..++++|.++||+..+||||
T Consensus 155 ~~~~~~~~~~g~~v~~~~-~~~~-~~~~~~~l~~~~~~~~l~~~~~~~~~vIl~~~~~~~~~~l~~a~~~gm~~~~~~wi 232 (363)
T cd06381 155 QEFLDQLSRQGIDVLLQK-VDLN-ISKMATALFTTMRCEELNRYRDTLRRALLLLSPNGAYTFIDASVETNLAIKDSHWF 232 (363)
T ss_pred HHHHHHHHhcCceEEEEe-cccc-cchhhhhhhhHHHHHHHHhhcccceEEEEEcCcHHHHHHHHHHHHcCCCcCceEEE
Confidence 888888988898665432 2211 1223444444332 456678899999999999999999999999999998
Q ss_pred EeCcccc-ccCCCCcCChhhhhhccceEEEEEecCCChHHH----HHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHH
Q 008205 256 VTDWLSS-ILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKR----KFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLL 330 (574)
Q Consensus 256 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~ 330 (574)
+++.+.. ..+. +.......|+++|++.++.....+ .+.+.|+......++ ....+...++++||||+++
T Consensus 233 ~~~~l~~~~~~l-----~~~~~~~~nitgfrl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~al~yDaV~~~ 306 (363)
T cd06381 233 LINEEISDTEID-----ELVRYAHGRMTVIRQTFSKEKTNQRCLRNNHRISSLLCDPKDG-YLQMLEISNLYIYDSVLLL 306 (363)
T ss_pred Eeccccccchhh-----HHHhhcCccEEEEEEecCCcCchHHHHHHHHHHHHhhcCCCCC-CCCChhHHHHHHHHHHHHH
Confidence 7765443 2232 456678999999999988766666 455566543221121 2224567899999999998
Q ss_pred HHHHHHHhhcCCCccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeec
Q 008205 331 AHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIG 410 (574)
Q Consensus 331 a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~ 410 (574)
+++|++++|+|+||+|+||++|+|.+++++|+++..
T Consensus 307 --------------------------------------------~~~~~~~~~~GLTG~i~F~~~g~r~~~~l~i~~~~~ 342 (363)
T cd06381 307 --------------------------------------------LETIKKGPITGLTGKLEFNEGGDNSNVQFEILGTGY 342 (363)
T ss_pred --------------------------------------------HHHHHhcCccCcceeEEeCCCCCccccEEEEEEecc
Confidence 236777899999999999999999999999999995
Q ss_pred Ce-----EEEEEEeeCCCCCc
Q 008205 411 TG-----SRRIGYWSNHSGLS 426 (574)
Q Consensus 411 ~~-----~~~VG~w~~~~gl~ 426 (574)
++ .++||+|++.+||+
T Consensus 343 ~~~~~~~~~~~~~w~~~~~~~ 363 (363)
T cd06381 343 SETLGKDGRWLATWNPSKGLN 363 (363)
T ss_pred CCccccceEEeeeccCCCCCC
Confidence 55 79999999988763
No 35
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=100.00 E-value=2e-42 Score=348.66 Aligned_cols=339 Identities=30% Similarity=0.485 Sum_probs=281.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-CHHHHHHHHHHhHhcCcEEEEcCCChHHHHHHHHhhccCCccEEec
Q 008205 49 AKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNY-SRFLGMVEALTLLENETVAIIGPQFSVIAHLVSHIANEFQVPLLSF 127 (574)
Q Consensus 49 ~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~-~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~ 127 (574)
...|+++|+++||++++++++++|++.+.|+++ +........|.+..+++.+||||.|+..+.+++++++.++||+|++
T Consensus 2 ~~~a~~~Ai~~iN~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~v~aviGp~~~~~~~~~~~~~~~~~ip~is~ 81 (348)
T PF01094_consen 2 VLAAVQLAIDEINNNPDLLPNITLEVQVFDTCSDDSFALQAAICSLNKQGVVAVIGPSCSSSAEAVASLASEWNIPQISP 81 (348)
T ss_dssp HHHHHHHHHHHHHHSSTSSTTSEEEEEEEEETTTTHHHHHHHHHHHHHHTECEEEETSSHHHHHHHHHHHHHTT-EEEES
T ss_pred HHHHHHHHHHHHHcCCCCCCCeEEEEEEEeeccCCcccccchhhhccCCCcEEEECCCcccccchhheeecccccceeec
Confidence 578999999999999999999999999999984 5566666667777789999999999999999999999999999999
Q ss_pred ccCCCCcCC--CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcC-cEEEEEeecCC
Q 008205 128 AATDPSLSS--LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKR-CRLSHKVPLSP 204 (574)
Q Consensus 128 ~~~~~~ls~--~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g-~~v~~~~~~~~ 204 (574)
+++++.+++ ..||+++|+.|++..++.++++++++|+|++|++||+++++|....+.+++.+++.+ .++.......
T Consensus 82 ~~~~~~ls~~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~v~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 160 (348)
T PF01094_consen 82 GSTSPSLSDRKTRYPTFFRTVPSDSSQARALVDLLKHFGWTRVSVVYSDDDYGNSLADSFQDLLRERGGICVAFISVVI- 160 (348)
T ss_dssp SGGSGGGGSTTTTTTTEEESSB-HHHHHHHHHHHHHHTTSSEEEEEEESSHHHHHHHHHHHHHHHHHTTCEEEEEEEEE-
T ss_pred cccccccccchhhccccccccccHHHHHHHHHHhhhcCCCceeeeeccccccccccchhhhhhhcccccceeccccccc-
Confidence 999999988 389999999999999999999999999999999999999988888999999999965 4555412222
Q ss_pred CCChhhHHHHHHHhhc--CCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCcCChhhhhhccceE
Q 008205 205 KGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVL 282 (574)
Q Consensus 205 ~~~~~~~~~~l~~ik~--~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~ 282 (574)
....+....++.+++ .++++||++++...+..++++|.++||...+|+||+++.+....... .........|++
T Consensus 161 -~~~~~~~~~~~~l~~~~~~~rvvil~~~~~~~~~~l~~a~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~ 236 (348)
T PF01094_consen 161 -SSDSDAEELLKKLKEIKSGARVVILCSSPEDARQFLEAAYELGMTSGDYVWILTDLDNSSFWQN---NEDFREAFQGVL 236 (348)
T ss_dssp -TTTSHHHHHHHHHHHHTTTTSEEEEESBHHHHHHHHHHHHHTTTSSTTSEEEEETTTTTTHTST---HCHHHCCHTTEE
T ss_pred -ccccchhhhhhhhhhccccceeeeeecccccccccccchhhhhccccceeEEeecccccccccc---ccccccccccee
Confidence 233344455555554 99999999999999999999999999999999999999876543211 145667899999
Q ss_pred EEEEecCCChHHHHHHHHHHHhhcc-CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCccccCCcccccccCCCcc
Q 008205 283 TLRMYTQSSEEKRKFVTRWRHLTRR-NTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMR 361 (574)
Q Consensus 283 ~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (574)
++++..+..+.+++|.+.|+..... +.......+..+++++|||++++++|++++.+.+....
T Consensus 237 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDAv~~~a~al~~~~~~~~~~~---------------- 300 (348)
T PF01094_consen 237 GFTPPPPSSPEFEDFMKKWKESNNQSSTSGSDQEPSPYAAYAYDAVYLLAHALNRALQDGGPVT---------------- 300 (348)
T ss_dssp EEEESTTTSHHHHHHHHHHHTTTHTTTTTTTTSSGCHHHHHHHHHHHHHHHHHHHHHHHHSTTT----------------
T ss_pred eeeeecccccchhhhhcccChhhccCcccccccccceeeeeehhhhHHHHHHHHHHHHhccCCC----------------
Confidence 9999888889999999999875321 12223345678899999999999999999987643211
Q ss_pred cccccccCchHHHHHHHHhcccccccccEEEcC-CCCCCCCcEEEEEee
Q 008205 362 FSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTS-DRDLINPAYEVINVI 409 (574)
Q Consensus 362 c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~-~G~r~~~~~~i~~~~ 409 (574)
.....|.+|..+.++|++++|+|++|++.||+ +|+|.++.|+|+|++
T Consensus 301 -~~~~~~~~g~~l~~~l~~~~f~G~tG~v~f~~~~G~~~~~~~~i~~~~ 348 (348)
T PF01094_consen 301 -NGRNPWQNGSQLLKYLRNVSFEGLTGRVSFDSNDGDRTNYDYDILNMQ 348 (348)
T ss_dssp -SSSGTSTTHHHHHHHHHTEEEEETTEEEEEETTTSBEESEEEEEEEE-
T ss_pred -CCccccccHHHHHHHHhheeeeCCCCCEEEeCCCCCcCCCEEEEEECC
Confidence 01146778999999999999999999999999 999989999999975
No 36
>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=100.00 E-value=2e-41 Score=330.71 Aligned_cols=344 Identities=14% Similarity=0.163 Sum_probs=254.8
Q ss_pred CCCCeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-CHHHHHHHHHHh-HhcCcEEEEcC-
Q 008205 28 TIPPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNY-SRFLGMVEALTL-LENETVAIIGP- 104 (574)
Q Consensus 28 ~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~-~~~~a~~~~~~l-~~~~v~aiiGp- 104 (574)
..+..|+||+||+.. ...+.||++|++.+|++..++++++|++++..... |++++.+++|++ +++||.||+||
T Consensus 14 ~~~~~i~iG~if~~~----~~~~~af~~Av~~~N~~~~l~~~~~L~~~~~~~~~~dsf~~~~~vC~~ll~~GV~AIfg~p 89 (382)
T cd06377 14 RIGHTVRLGALLVRA----PAPRDRVLAALARANRAPLLPYNLSLEVVAAAAPSRDPASLLRSVCQTVVVQGVSALLAFP 89 (382)
T ss_pred hcCCceeeeEEecCC----chHHHHHHHHHHHhccccccccCceeEEeEEEcCCCChHHHHHHHHHhHhhCCeEEEEecC
Confidence 345679999999875 35799999999999999888888999999987765 999999999999 59999999994
Q ss_pred CChHHHHHHHHhhccCCccEEecccCCCCc-CCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHH
Q 008205 105 QFSVIAHLVSHIANEFQVPLLSFAATDPSL-SSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIA 183 (574)
Q Consensus 105 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~l-s~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~ 183 (574)
.++.++..+.++|+.++||+|++...++.. ++..+.+.+++.|+.++++.|++++|++|+|++|++||+.+++ ...++
T Consensus 90 ~s~~~~~~v~sic~~l~IP~I~~~~~~~~~~~~~~~~l~L~l~P~~~~l~~a~~~ll~~~~W~~f~~iy~~~~g-l~~lq 168 (382)
T cd06377 90 QTRPELVQLDFVSAALEIPVVSIVRREFPRGSQNPFHLQMSWASPLSTLLDVLLSVLQRNGWEDVSLVLCRERD-PTGLL 168 (382)
T ss_pred CCHHHHHHHHHHhcCCCCCEEEecCCcccccCCCceeEEEEecCCHHHHHHHHHHHHHHCCCcEEEEEEecCcC-HHHHH
Confidence 877888999999999999999985544333 2233344557799999999999999999999999999988863 33333
Q ss_pred HHHHHHhhcCc--EEEEEeecCCC-CChhhH-HHHHHHhhcCC-CeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeC
Q 008205 184 ALGDKLAEKRC--RLSHKVPLSPK-GSRNQI-IDTLLTVSSMM-SRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD 258 (574)
Q Consensus 184 ~l~~~~~~~g~--~v~~~~~~~~~-~~~~~~-~~~l~~ik~~~-~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~ 258 (574)
.+.+.....++ .+..+ .++.. .+..++ +.+|+++++.. .++|+++|+.+.+..+|+++.+ .|+||+++
T Consensus 169 ~l~~~~~~~~~~~~i~v~-~~~~~~~d~~~~~~~~L~~i~~~~~~~~ill~cs~e~~~~il~~~~~------~y~wIv~~ 241 (382)
T cd06377 169 LLWTNHARFHLGSVLNLS-RNDPSTADLLDFLRAQLELLKDPPGPAVVLFGCDVARARRVLELTPP------GPHWILGD 241 (382)
T ss_pred HHHHHhcccccCceEEEE-eccCccCChhHHHHHHHHHhhcccCceEEEEECCHHHHHHHHHhhcc------ceEEEEcC
Confidence 33333332221 22222 22211 134455 99999999999 9999999999999999988755 49999987
Q ss_pred ccccccCCCCcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHh
Q 008205 259 WLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFF 338 (574)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~ 338 (574)
. .+. +++.....++.-+. |.+. ......+++||||+++|.|++.+.
T Consensus 242 ~----~~l-----e~~~~~g~nigLl~---------------~~~~----------~~~~l~ali~DAV~lvA~a~~~l~ 287 (382)
T cd06377 242 P----LPP-----EALRTEGLPPGLLA---------------HGET----------TQPPLEAYVQDALELVARAVGSAT 287 (382)
T ss_pred C----cCh-----hhccCCCCCceEEE---------------Eeec----------ccccHHHHHHHHHHHHHHHHHHhh
Confidence 2 122 11222222222221 1100 001237899999999999999873
Q ss_pred hcCCCccccCCcccccccCCCcccccc--c-ccCchHHHHHHHHhcccccccccEEEcCCCCC--CCCcEEEEEee--cC
Q 008205 339 DQGGNISFSEDSKLSELSRGDMRFSSV--S-IFNGGKMLLDNILQVNMTGVTGPIKFTSDRDL--INPAYEVINVI--GT 411 (574)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~c~~~--~-~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r--~~~~~~i~~~~--~~ 411 (574)
...... .+....++|... . +|++|..|.++|++++|+|+||+|.|+ .|.| .++.++|++++ ..
T Consensus 288 ~~~~~~---------~l~~~~~~C~~~~~~~~W~~G~~l~~~Lknv~~eGlTG~I~F~-~g~R~~~~~~l~I~~L~~~~~ 357 (382)
T cd06377 288 LVQPEL---------ALIPATVNCMDLPTKGNESSGQYLARFLANTSFDGRTGPVWVT-GSSQVHSSRHFKVWSLRRDPV 357 (382)
T ss_pred hccccc---------ccCCCCCCcccCCCCCCCCchHHHHHHHHhCcccccceeEEEc-cCeeecccceEEEEEeccccC
Confidence 110000 123344678654 5 899999999999999999999999995 5888 89999999999 55
Q ss_pred eE---EEEEEeeCCCCCcc
Q 008205 412 GS---RRIGYWSNHSGLSV 427 (574)
Q Consensus 412 ~~---~~VG~w~~~~gl~~ 427 (574)
|. ++||+|++...+.|
T Consensus 358 G~~~W~kVG~W~~~~~~~~ 376 (382)
T cd06377 358 GQPTWTTVGSWQGGRKIVM 376 (382)
T ss_pred CCccceEEEEecCCCceec
Confidence 55 99999998654444
No 37
>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=100.00 E-value=7.6e-42 Score=339.85 Aligned_cols=313 Identities=16% Similarity=0.203 Sum_probs=243.6
Q ss_pred cEEEEEEecC-CCCHHHHHHHHHHhHhc-CcEEEE-cCCChH--HHHHHHHhhccCCccEEecccCCC-CcCC-CCCCce
Q 008205 70 TKLKLTVHDT-NYSRFLGMVEALTLLEN-ETVAII-GPQFSV--IAHLVSHIANEFQVPLLSFAATDP-SLSS-LQYPFF 142 (574)
Q Consensus 70 ~~l~~~~~d~-~~~~~~a~~~~~~l~~~-~v~aii-Gp~~s~--~~~~va~~~~~~~iP~Is~~~~~~-~ls~-~~~~~~ 142 (574)
.++.+++... ..||++.+.++|+++.. +|.|+| ||.++. .+..++.++++++||+|++.+.++ .+++ ..+|||
T Consensus 33 ~~~~~~~~~~~~~d~~~~~~~vC~ll~~~~V~aiIfgp~~~~~~~a~~~s~~~~~~~vP~is~~~~s~~~ls~~~~~p~f 112 (362)
T cd06378 33 LDVNVVTLLVNETDPKSILTQLCDLLSTTKVHGVVFEDDTDQEAVAQILDFISAQTFLPILGIHGGSSMIMAAKDSGSTF 112 (362)
T ss_pred CCccceeeecCCCCHHHHHHHHHHHhcccceEEEEecCCCCccccchhhhhhhhceeccEEEecccccccccCCCCCceE
Confidence 3445544433 45999999999999987 599755 999987 445666667779999999875554 4555 578999
Q ss_pred EEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCC-ChhhHHHHHHHhhcC
Q 008205 143 VRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKG-SRNQIIDTLLTVSSM 221 (574)
Q Consensus 143 ~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~-~~~~~~~~l~~ik~~ 221 (574)
+|+.|++..|+.|+++++++|+|++|++||++++++..+.+.+++.+...++|+.....++... ...+...+++.+++.
T Consensus 113 lr~~Psd~~q~~Ai~~Ii~~f~W~~v~iV~~~~~g~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~lk~~ 192 (362)
T cd06378 113 LQFGPSIEQQAAVMLKIMEEYDWHAFSVVTSRFPGYDDFVSAVRTTVDNSFVGWELQSVLTLDMSDDDGDARTQRQLKKL 192 (362)
T ss_pred EEeCCCHHHHHHHHHHHHHHCCCeEEEEEEEcCCCHHHHHHHHHHHHhhcccceeEEEEEeeccCCCcchHHHHHHHHhc
Confidence 9999999999999999999999999999999988777777888888776666654443333222 223477889999999
Q ss_pred CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCcCChhhhhhccceEEEEEecCCChHHHHHHHHH
Q 008205 222 MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRW 301 (574)
Q Consensus 222 ~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~ 301 (574)
++++||++|+.+.+..++++|.++||++++|+||++++.....+.. ......|++++.. ++|
T Consensus 193 ~arViVl~~s~~~a~~if~~A~~~gm~g~~yvWI~t~~~~~~~~~~------~~~~~~G~i~v~~------------~~w 254 (362)
T cd06378 193 ESQVILLYCSKEEAEYIFRAARSAGLTGPGYVWIVPSLVLGNTDLG------PSEFPVGLISVSY------------DGW 254 (362)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCcCCCeEEEecccccCCCccc------cccCCcceEeecc------------ccc
Confidence 9999999999999999999999999999999999999876553211 1134566666542 223
Q ss_pred HHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCccccCCcccccccCCCccccc-cc-ccCchHHHHHHHH
Q 008205 302 RHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSS-VS-IFNGGKMLLDNIL 379 (574)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~-~~-~~~~g~~l~~~l~ 379 (574)
+. ...+.+||||+++|+|++.+.+.+..++ ....+|.. .. +|.+|..|+++|+
T Consensus 255 ~~--------------~~~a~~~DaV~vva~Al~~l~~~~~~~~-----------~~~~~C~~~~~~~~~~G~~l~~~l~ 309 (362)
T cd06378 255 RY--------------SLRARVRDGVAIIATGASAMLRQHGFIP-----------EAKGSCYGQAEKRDLPPNTLHRYMM 309 (362)
T ss_pred cc--------------cHHHHHHHHHHHHHHHHHHHHhccCCCC-----------CCCCCcCCCCCCCCCchHHHHHHhh
Confidence 21 1256889999999999999876444332 22345643 33 4888999999999
Q ss_pred hcccccccccEEEcCCCCCCCCcEEEEEeec-CeEEEEEEeeCCCCCccc
Q 008205 380 QVNMTGVTGPIKFTSDRDLINPAYEVINVIG-TGSRRIGYWSNHSGLSVV 428 (574)
Q Consensus 380 ~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~-~~~~~VG~w~~~~gl~~~ 428 (574)
+++|+|+ +|+||++|+|.++.|+|+++++ .++++||.|+ ..+|.|.
T Consensus 310 ~v~~~G~--~i~F~~~G~r~~~~ldIinl~~~~g~~kVG~W~-~~~L~~~ 356 (362)
T cd06378 310 NVTWEGR--DLSFTEDGYLVNPKLVVISLNKERVWEEVGKWE-NGSLRLK 356 (362)
T ss_pred cceECCC--ceeECCCCeEccceEEEEEecCCCCceEEEEEc-CCeEEEe
Confidence 9999997 9999999999999999999996 5999999998 4667664
No 38
>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current.
Probab=100.00 E-value=1.7e-42 Score=345.71 Aligned_cols=335 Identities=14% Similarity=0.099 Sum_probs=252.7
Q ss_pred CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecC------CC-CHHHHHHHHHHhHhcCc--EEEEcCCChHHHHHH
Q 008205 43 STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDT------NY-SRFLGMVEALTLLENET--VAIIGPQFSVIAHLV 113 (574)
Q Consensus 43 ~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~------~~-~~~~a~~~~~~l~~~~v--~aiiGp~~s~~~~~v 113 (574)
...|...+.||++|++++|++. +.+|.+.+.++ .+ |.+.+.+++|+++++|+ .|||||.++..+..+
T Consensus 8 ~~~~~~~~~A~~~Av~~~N~~~----~~~l~~~~~~~~~~~~~~~~d~~~~~~~~C~~~~~gv~~~AIiGp~ss~~a~~V 83 (368)
T cd06383 8 EDDNDVYKQIIDDALSYINRNI----GTGLSVVHQQVETNAEVNRNDVKVALIEVCDKADSAIVPHLVLDTTTCGDASEI 83 (368)
T ss_pred ccchHHHHHHHHHHHHHHhcCC----CCceEEEEecccccccccCCcHHHHHHHHHHHHHccCCcEEEECCCcchhHHHH
Confidence 3467889999999999999986 56777777766 54 78888888999999998 899999999999999
Q ss_pred HHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHH-HHhhc
Q 008205 114 SHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGD-KLAEK 192 (574)
Q Consensus 114 a~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~-~~~~~ 192 (574)
+++|+.++||+|++..+ ..++.++||++|+.|++..+..|+++++++|+|++|++||+++++....++.+.. .....
T Consensus 84 ~si~~~~~IP~Is~s~~--~~~~~~~p~~ir~~Ps~~~~~~Ai~dlI~~f~W~~v~iIYddd~gl~~~l~~~l~~~~~~~ 161 (368)
T cd06383 84 KSVTGALGIPTFSASYG--QEGDLEQPYLIQLMPPADDIVEAIRDIVSYYNITNAAILYDDDFVMDHKYKSLLQNWPTRH 161 (368)
T ss_pred HHHHhccCCCEEEccCC--CcCcccCceEEEEeCChHHHHHHHHHHHHHCCCcEEEEEEEcCchhhHHHHHHHHhHHhcC
Confidence 99999999999997443 2333578999999999999999999999999999999999777643323333333 33333
Q ss_pred CcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh-HHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCcCC
Q 008205 193 RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLH 271 (574)
Q Consensus 193 g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~-~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~~~ 271 (574)
++++. + ....++++.+++|++.+.++||++|.. +.+..+|++|.++||++.+||||++++.....+.
T Consensus 162 ~~~v~-----~--~~~~~~~~~Lk~lk~~~~~rIIi~~s~~~~~~~il~qA~~lgm~~~~y~wilt~ld~~~~dl----- 229 (368)
T cd06383 162 VITII-----N--SIIDEVREQIKRLRNLDIKNIFILGSTEEIIRYVLDQALAEGFMGRKYAWFLGNPDLGIYDD----- 229 (368)
T ss_pred CEEEE-----e--ccchhHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHcCCcCCceEEEEcCCCchhhhh-----
Confidence 44442 1 123568899999999998677777774 9999999999999999999999999987765544
Q ss_pred hhhhhhccceEEEEEecCCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCccccCCcc
Q 008205 272 SEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSK 351 (574)
Q Consensus 272 ~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~ 351 (574)
++......|++++++........+.+.++|.+.. ..+.....+...++++||||++++.|++++........ +.
T Consensus 230 ~~~~~~~~Nitgfrl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~aL~~Dav~~~~~a~~~l~~~~~~~~-~~--- 303 (368)
T cd06383 230 LSCQLRNASIFVTRPMMDYQSSVRGALLRTDEPT--LRPVFYFEWAFRLFLAYDAVLAVGEWPRRMRKKRVEDG-ST--- 303 (368)
T ss_pred hhhccccCcEEEeeccccchhhhccceeeccCCc--cCchhHHHHHHHHHHHHHHHHHhccccchhheeeccCC-Cc---
Confidence 3455677899999997665555577777763211 01111123456799999999999999998732211110 00
Q ss_pred cccccCCCcccccc---ccc-CchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEE
Q 008205 352 LSELSRGDMRFSSV---SIF-NGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEV 405 (574)
Q Consensus 352 ~~~~~~~~~~c~~~---~~~-~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i 405 (574)
......|... .+| .+|..+.++|+.++|+|+||+|+||++|+|.++++.+
T Consensus 304 ----~~~~~~~~g~~~~~~w~~~g~~~~~~~k~~~~~gltG~i~f~~~g~R~~~~l~~ 357 (368)
T cd06383 304 ----GTSVLPGFGISPESPLMTLQSSPFNGSSEIKFEMLAGRVAIDEGSSVSTKTIGS 357 (368)
T ss_pred ----CccccCCCCCCcccchhhcccccccCccceeEeeecCeEEEecCceeeeeeeee
Confidence 0012244443 257 6788999999999999999999999999987654433
No 39
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=100.00 E-value=1.1e-40 Score=331.96 Aligned_cols=321 Identities=24% Similarity=0.353 Sum_probs=269.0
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecC-CCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDT-NYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~-~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 112 (574)
+||+|||.+. .....|+++|+++||++++++++.++.+.+.|+ .+++..+.+.+|+++.++|.+||||.+|..+.+
T Consensus 1 ~iG~i~~~~~---~~~~~a~~lAv~~iN~~ggil~~~~l~~~~~d~~~~~~~~a~~~a~~li~~~V~aiiG~~~S~~~~a 77 (324)
T cd06368 1 RIGAIFDEDA---RQEELAFRFAIDRINTNEEILAKFTLVPDIDELNTNDSFELTNKACDLLSQGVAAIFGPSSSSSANT 77 (324)
T ss_pred CEEEEeCCCC---hHHHHHHHHHHHHhcccccccCCceeeeEEEEecCCChHHHHHHHHHHHhcCcEEEECCCCHHHHHH
Confidence 5999999976 678999999999999999999878999999997 489999999999999999999999999999999
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhc
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEK 192 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~ 192 (574)
++++++.++||+|+++++++.++ . ++.+++.|++..++.++++++++++|++++++|++++ +...++.+.+.+++.
T Consensus 78 v~~i~~~~~ip~is~~~~~~~~~-~--~~~~~~~~~~~~~~~a~~~~~~~~~w~~vaii~~~~~-~~~~l~~~~~~~~~~ 153 (324)
T cd06368 78 VQSICDALEIPHITTSWSPNPKP-R--QFTINLYPSMRDLSDALLDLIKYFGWRKFVYIYDSDE-GLLRLQELLDALSPK 153 (324)
T ss_pred HHHHHhccCCCcEEecCCcCCCC-C--cceEEecCCHHHHHHHHHHHHHhcCCCEEEEEECCcH-hHHHHHHHHHhhccC
Confidence 99999999999999988877665 2 3445556777789999999999999999999997765 455567777778888
Q ss_pred CcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCcCCh
Q 008205 193 RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHS 272 (574)
Q Consensus 193 g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~~~~ 272 (574)
|+++......+ ...+++.+|.+++..++++||+.|...++..++++|.++||..+.|+||+++......+. .
T Consensus 154 g~~v~~~~~~~---~~~d~~~~l~~i~~~~~d~Vi~~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~~~~~~~~~-----~ 225 (324)
T cd06368 154 GIQVTVRRLDD---DTDMYRPLLKEIKREKERRIILDCSPERLKEFLEQAVEVGMMSEYYHYILTNLDFHTLDL-----E 225 (324)
T ss_pred CceEEEEEecC---CchHHHHHHHHHhhccCceEEEECCHHHHHHHHHHHHHhccccCCcEEEEccCCccccch-----h
Confidence 99988765333 223899999999999999999999999999999999999999899999998764432221 2
Q ss_pred hhhhhccceEEEEEecCCChHHHHHHHHHHHhhcc-CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCccccCCcc
Q 008205 273 EKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRR-NTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSK 351 (574)
Q Consensus 273 ~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~ 351 (574)
.......++.++....+..+.+++|.++|++.++. ++......+..+++.+|||++++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~aa~~yDav~~~--------------------- 284 (324)
T cd06368 226 LFRYGGVNITGFRLVDPDNPEVQKFIQRWERSDHRICPGSGLKPIKTESALTYDAVLLF--------------------- 284 (324)
T ss_pred hhhcCCceEEEEEEecCCChHHHHHHHHHHhccccccCCCCCCCcchhhHhhhcEEEEe---------------------
Confidence 22335557888888888888999999999988753 22222235677889999997654
Q ss_pred cccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeecCeEEEEEEeeCCCCC
Q 008205 352 LSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGL 425 (574)
Q Consensus 352 ~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~~~~~~VG~w~~~~gl 425 (574)
||+++||++|+|.++.++|+++...+.++||.|++..|+
T Consensus 285 -----------------------------------tg~~~f~~~g~~~~~~~~i~~~~~~~~~~~g~W~~~~~~ 323 (324)
T cd06368 285 -----------------------------------TGRIQFDENGQRSNFTLDILELKEGGLRKVGTWNPEDGL 323 (324)
T ss_pred -----------------------------------eeeeEeCCCCcCcceEEEEEEEcCCCceEEEEECCCCCC
Confidence 788999999999999999999999999999999987764
No 40
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=100.00 E-value=3.7e-37 Score=308.24 Aligned_cols=328 Identities=21% Similarity=0.228 Sum_probs=279.1
Q ss_pred EEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHH
Q 008205 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIA 110 (574)
Q Consensus 34 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~ 110 (574)
+||++.|++ +..|.....|+++|++++|+++++ +|++|++++.|+++++..+.+.+.+++.++|.+|+||.++..+
T Consensus 1 ~iG~~~p~sG~~~~~g~~~~~g~~~a~~~iN~~ggi-~g~~i~~~~~D~~~~~~~~~~~~~~li~~~v~aiiG~~~s~~~ 79 (334)
T cd06342 1 KIGVAGPLTGPNAALGKDIKNGAQLAVEDINAKGGG-KGVKLELVVEDDQADPKQAVAVAQKLVDDGVVGVVGHLNSGVT 79 (334)
T ss_pred CeeEeccCCCcchhhcHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEecCCCChHHHHHHHHHHHhCCceEEECCCccHhH
Confidence 589999998 456788999999999999999877 6899999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH-HHcCCeEEEEEEEcCCCCcchHHHHHHHH
Q 008205 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV-DYFGWRNVIALYVDDDHGRNGIAALGDKL 189 (574)
Q Consensus 111 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll-~~~~W~~v~ii~~~~~~g~~~~~~l~~~~ 189 (574)
.+++++++..+||+|++.++.+.+.+..||++||+.|++..++.++++++ ++++|++|+++++++++|....+.+++.+
T Consensus 80 ~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~g~~~~~~~~~~~ 159 (334)
T cd06342 80 IPASPIYADAGIVMISPAATNPKLTERGYKNVFRVVARDDQQGPAAAKYAVETLKAKKVAIIDDKTAYGQGLADEFKKAL 159 (334)
T ss_pred HHhHHHHHhCCCeEEecCCCCchhhcCCCceEEeccCCcHHHHHHHHHHHHHhcCCCEEEEEeCCcchhhHHHHHHHHHH
Confidence 99999999999999998777666666678999999999999999999975 57899999999999999999999999999
Q ss_pred hhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCc
Q 008205 190 AEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQ 269 (574)
Q Consensus 190 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~ 269 (574)
++.|++|.....++ .+..++...++++++.++++|++.+....+..+++++.+.|+. ..|+..+.+... ...
T Consensus 160 ~~~g~~v~~~~~~~--~~~~d~~~~l~~i~~~~~~~vi~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~-~~~-- 231 (334)
T cd06342 160 KAAGGKVVAREGTT--DGATDFSAILTKIKAANPDAVFFGGYYPEAGPLVRQMRQLGLK---APFMGGDGLCDP-EFI-- 231 (334)
T ss_pred HHcCCEEEEEecCC--CCCccHHHHHHHHHhcCCCEEEEcCcchhHHHHHHHHHHcCCC---CcEEecCccCCH-HHH--
Confidence 99999999887776 3567899999999999999999999999999999999999984 346665433211 100
Q ss_pred CChhhhhhccceEEEEEecC--CChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 008205 270 LHSEKMDDIQGVLTLRMYTQ--SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFS 347 (574)
Q Consensus 270 ~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~ 347 (574)
.......+|++......+ ..+..++|.++|+++++. .++..+..+||+++++++|++++. .
T Consensus 232 --~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-------~~~~~~~~~yda~~~~~~al~~~~---~----- 294 (334)
T cd06342 232 --KIAGDAAEGTYATFPGGPLEKMPAGKAFVARYKAKFGD-------PPGAYAPYAYDAANVLAEAIKKAG---S----- 294 (334)
T ss_pred --HHhhHhhCCcEEEecCCCCCCChHHHHHHHHHHHHhCC-------CCchhHHHHHHHHHHHHHHHHHhC---C-----
Confidence 112245678777665544 367789999999887742 235678899999999999999851 0
Q ss_pred CCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEe
Q 008205 348 EDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINV 408 (574)
Q Consensus 348 ~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~ 408 (574)
.++..+.++|++++|+|++|++.|+++|++.+..|+|+||
T Consensus 295 ---------------------~~~~~v~~~l~~~~~~g~~g~i~f~~~g~~~~~~~~~~~~ 334 (334)
T cd06342 295 ---------------------TDPAKVADALRKVDFDGVTGKISFDAKGDLKGAAVTVYQV 334 (334)
T ss_pred ---------------------CCHHHHHHHHHhCCCCCcceeeEECCCCCcccCcEEEEeC
Confidence 1488999999999999999999999999999999999875
No 41
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=100.00 E-value=2.9e-37 Score=310.67 Aligned_cols=308 Identities=29% Similarity=0.456 Sum_probs=259.4
Q ss_pred EEEEEeccCCc-------------cchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc----
Q 008205 34 NIGAVFALNST-------------IGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN---- 96 (574)
Q Consensus 34 ~IG~l~~~~~~-------------~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~---- 96 (574)
.||++||.+.. .|.....++.+|+++||+++++++|++|++++.|+++++.++++.+++++.+
T Consensus 1 ~ig~lf~~~~~~~~~~~~c~~~~~~~~~~~~~~~~Av~~iN~~~~~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~~~~~ 80 (348)
T cd06350 1 IIGGLFPLHSGSESVSLKCGRFGKKGLQAAEAMLFAVEEINNDPDLLPNITLGYHIYDSCCSPAVALRAALDLLLSGEGT 80 (348)
T ss_pred CeEEEEeCcccccCCCcccceechHHHHHHHHHHHHHHHHcCCCccCCCCceeEEEEecCCcchHHHHHHHHHHhcCCCC
Confidence 38999999852 2456678999999999999989999999999999999999999999999975
Q ss_pred ----------CcEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCC-CCCCceEEecCChHHHHHHHHHHHHHcCC
Q 008205 97 ----------ETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGW 165 (574)
Q Consensus 97 ----------~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~ll~~~~W 165 (574)
+|.+|+||.+|..+.++++++..++||+|+++++++.+++ ..|||+||+.|++..++.++++++++++|
T Consensus 81 ~~~~~~~~~~~v~aiiG~~~S~~~~a~~~~~~~~~vp~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~~ 160 (348)
T cd06350 81 TPPYSCRKQPKVVAVIGPGSSSVSMAVAELLGLFKIPQISYGATSPLLSDKLQFPSFFRTVPSDTSQALAIVALLKHFGW 160 (348)
T ss_pred CCCCcCCCCCceEEEECCCccHHHHHHHHHHhcCcCceecccCCChhhccccccCCeeEecCCcHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999998888876 57899999999999999999999999999
Q ss_pred eEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHC
Q 008205 166 RNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHL 245 (574)
Q Consensus 166 ~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~ 245 (574)
++++++|+++++|....+.+++.+++.|++|.....++......++..++++|+.+++++|++.+...++..++++|+++
T Consensus 161 ~~v~~l~~~~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vvv~~~~~~~~~~~~~~a~~~ 240 (348)
T cd06350 161 TWVGLVYSDDDYGRSGLSDLEEELEKNGICIAFVEAIPPSSTEEDIKRILKKLKSSTARVIVVFGDEDDALRLFCEAYKL 240 (348)
T ss_pred eEEEEEEecchhHHHHHHHHHHHHHHCCCcEEEEEEccCCCcHHHHHHHHHHHHhCCCcEEEEEeCcHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999888777433367899999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEeCccccccCCCCcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHH
Q 008205 246 RMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYD 325 (574)
Q Consensus 246 gm~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yD 325 (574)
|+ ...+.| +++.+....... ....+..+|++++..+.+.....+.|.+.|++ +++.+||
T Consensus 241 g~-~~~~~i-~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~---------------~~~~~YD 299 (348)
T cd06350 241 GM-TGKYWI-ISTDWDTSTCLL----LFTLDAFQGVLGFSGHAPRSGEIPGFKDFLRK---------------YAYNVYD 299 (348)
T ss_pred CC-CCeEEE-EEccccCccccc----cCCcceeeeEEEEEEEeecCCcCCChHHHHHH---------------HHHHHHh
Confidence 99 444545 444333221111 12235678888888777655555566666654 4678899
Q ss_pred HHHHHHHHHHHHhhcCCCccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEE
Q 008205 326 TLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEV 405 (574)
Q Consensus 326 av~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i 405 (574)
|+++ .+.|+++|+|. ..++|
T Consensus 300 av~~-----------------------------------------------------------~v~f~~~gd~~-~~~~i 319 (348)
T cd06350 300 AVYA-----------------------------------------------------------EVKFDENGDRL-ASYDI 319 (348)
T ss_pred heeE-----------------------------------------------------------EEEecCCCCcc-cceeE
Confidence 8765 48999999975 67899
Q ss_pred EEeec----CeEEEEEEeeCC
Q 008205 406 INVIG----TGSRRIGYWSNH 422 (574)
Q Consensus 406 ~~~~~----~~~~~VG~w~~~ 422 (574)
.+++. .++++||.|++.
T Consensus 320 ~~~~~~~~~~~~~~vg~~~~~ 340 (348)
T cd06350 320 INWQIFPGGGGFVKVGFWDPQ 340 (348)
T ss_pred EEEEEcCCcEEEEEEEEEcCC
Confidence 88875 578999999873
No 42
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=100.00 E-value=2e-36 Score=304.64 Aligned_cols=337 Identities=15% Similarity=0.160 Sum_probs=282.4
Q ss_pred CCCeEEEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCC
Q 008205 29 IPPVLNIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQ 105 (574)
Q Consensus 29 ~~~~i~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~ 105 (574)
..++|+||++.|++ +..|.....++++|+++||+.+++. |++|++++.|++.+|..+.+.+.++++++|.+|+||.
T Consensus 22 ~~~~I~IG~l~plSG~~a~~G~~~~~g~~~av~~iNa~GGi~-G~~ielv~~D~~~~p~~a~~~~~~Li~~~V~~iiG~~ 100 (369)
T PRK15404 22 LADDIKIAIVGPMSGPVAQYGDMEFTGARQAIEDINAKGGIK-GDKLEGVEYDDACDPKQAVAVANKVVNDGIKYVIGHL 100 (369)
T ss_pred cCCceEEEEeecCCCcchhcCHhHHHHHHHHHHHHHhcCCCC-CeEEEEEeecCCCCHHHHHHHHHHHHhCCceEEEcCC
Confidence 45689999999998 4568889999999999999999985 7999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH-HHcCCeEEEEEEEcCCCCcchHHH
Q 008205 106 FSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV-DYFGWRNVIALYVDDDHGRNGIAA 184 (574)
Q Consensus 106 ~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll-~~~~W~~v~ii~~~~~~g~~~~~~ 184 (574)
+|..+.++++++...+||+|++.++++.+++..++|+||+.|.+..+..++++++ ++++|+++++|++++.||....+.
T Consensus 101 ~s~~~~a~~~~~~~~~ip~i~~~s~~~~l~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~k~va~i~~d~~~g~~~~~~ 180 (369)
T PRK15404 101 CSSSTQPASDIYEDEGILMITPAATAPELTARGYQLIFRTIGLDSDQGPTAAKYILEKVKPKRIAVLHDKQQYGEGLARS 180 (369)
T ss_pred CchhHHHhHHHHHHCCCeEEecCCCCHHHhcCCCceEEeCCCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCchhHHHHHH
Confidence 9999999999999999999999888888877678999999999999999999975 567999999999999999999999
Q ss_pred HHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCcccccc
Q 008205 185 LGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSIL 264 (574)
Q Consensus 185 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~ 264 (574)
+++.+++.|+++.....++ .+..|+..++.++++.++++|++.........+++++++.|+.. .|+.+.+....
T Consensus 181 ~~~~~~~~G~~v~~~~~~~--~g~~D~~~~v~~l~~~~~d~v~~~~~~~~~~~~~k~~~~~G~~~---~~i~~~~~~~~- 254 (369)
T PRK15404 181 VKDGLKKAGANVVFFEGIT--AGDKDFSALIAKLKKENVDFVYYGGYHPEMGQILRQAREAGLKT---QFMGPEGVGNK- 254 (369)
T ss_pred HHHHHHHcCCEEEEEEeeC--CCCCchHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHHCCCCC---eEEecCcCCCH-
Confidence 9999999999998877776 45678999999999999999988777778889999999999754 37766432211
Q ss_pred CCCCcCChhhhhhccceEEEEEec-CCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCC
Q 008205 265 DTDSQLHSEKMDDIQGVLTLRMYT-QSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGN 343 (574)
Q Consensus 265 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~ 343 (574)
... ....+..+|+++..+.. ...+..++|.+.|+++++ ..+..++...||++++++.|++++...
T Consensus 255 ~~~----~~~~~~~~Gv~~~~~~~~~~~~~~~~f~~~~~~~~~-------~~~~~~~~~~Y~~~~~l~~Al~~aG~~--- 320 (369)
T PRK15404 255 SLS----NIAGPASEGMLVTLPKRYDQDPANKAIVDAFKAKKQ-------DPSGPFVWTTYAAVQSLAAGINRAGSD--- 320 (369)
T ss_pred HHH----HhhhhhhcCcEEEccCCCccChhHHHHHHHHHHhcC-------CCCccchHHHHHHHHHHHHHHHhhCCC---
Confidence 000 11224567877654432 235678899999987653 123445778999999999999975210
Q ss_pred ccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeecCe
Q 008205 344 ISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTG 412 (574)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~~~ 412 (574)
++..|.++|++.+|+|++|++.|+++|++....|.|++|++++
T Consensus 321 --------------------------~~~~l~~al~~~~~~~~~G~~~~~~~g~~~~~~~~i~~~~~~~ 363 (369)
T PRK15404 321 --------------------------DPAKVAKYLKANTFDTVIGPLSWDEKGDLKGFEFGVFEWHADG 363 (369)
T ss_pred --------------------------CHHHHHHHHHhCCCCcceEeeEECCCCCcccCCEEEEEEEcCC
Confidence 4789999999999999999999999998878899999988654
No 43
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors
Probab=100.00 E-value=5.3e-37 Score=306.44 Aligned_cols=317 Identities=24% Similarity=0.335 Sum_probs=255.1
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC-CCHHHHHHHHHHhH-hcCcEEEEcCCChHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTN-YSRFLGMVEALTLL-ENETVAIIGPQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~-~~~~~a~~~~~~l~-~~~v~aiiGp~~s~~~~ 111 (574)
+||++|+... ...+.|+++|++++|..++++++..+.+.+.+.+ +++..+++.+|+++ .++|.+|+||.++..+.
T Consensus 1 ~iG~i~~~~~---~~~~~a~~~Ai~~iN~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~c~l~~~~~v~ai~G~~~s~~~~ 77 (328)
T cd06351 1 NIGAIFDRDA---RKEELAFRAAIDALNTENLNALPTKLSVEVVEVNTNDPFSLLRAVCDLLVSQGVAAIFGPTSSESAS 77 (328)
T ss_pred CeeeecCCCc---HHHHHHHHHHHHHhccCccccCCeeEEEEEEEeCCCChHHHHHHHHHHHhccCcEEEECCCCHHHHH
Confidence 4899998865 5788999999999999998887777777777666 69999999999999 77999999999999999
Q ss_pred HHHHhhccCCccEEecccCCCCcCC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHh
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLA 190 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~ 190 (574)
+++++|+.++||+|++.++.+.+++ ..+++++|+.|++..++.++++++++|+|++|++||+++++. ..++.+.+...
T Consensus 78 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~l~~~~w~~v~iiy~~~~~~-~~l~~~~~~~~ 156 (328)
T cd06351 78 AVQSICDALEIPHISISGGSEGLSDKEESSTTLQLYPSLEDLADALLDLLEYYNWTKFAIIYDSDEGL-SRLQELLDESG 156 (328)
T ss_pred HHHHHhccCCCCeEEeecCcccccccccccceEEecCCHHHHHHHHHHHHHHcCCcEEEEEEeCchHH-HHHHHHHHhhc
Confidence 9999999999999999887777665 568999999999999999999999999999999999888732 33333333333
Q ss_pred hcCcEEEEEeecCCCCChhhHHHHHHHhhcCCC-eEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCc
Q 008205 191 EKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMS-RILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQ 269 (574)
Q Consensus 191 ~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~-~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~ 269 (574)
..+..+... .+.. +..+++.++++++..++ ++|++++..+.+..++++|.++||++++|+||+++......+.
T Consensus 157 ~~~~~v~~~-~~~~--~~~~~~~~l~~l~~~~~~~vil~~~~~~~~~~~l~~a~~~gm~~~~~~~i~~~~~~~~~d~--- 230 (328)
T cd06351 157 IKGIQVTVR-RLDL--DDDNYRQLLKELKRSESRRIILDCSSEEEAKEILEQAVELGMMGYGYHWILTNLDLSDIDL--- 230 (328)
T ss_pred ccCceEEEE-EecC--CchhHHHHHHHHhhcccceEEEECCcHHHHHHHHHHHHHhccccCCcEEEEecCCccccch---
Confidence 334455444 3432 33379999999999988 5554444449999999999999999999999999977655443
Q ss_pred CChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 008205 270 LHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSED 349 (574)
Q Consensus 270 ~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~ 349 (574)
........|++++++..+..+..++|..+|... ++......+...++++||+++++
T Consensus 231 --~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~~~~------------------- 286 (328)
T cd06351 231 --EPFQYGPANITGFRLVDPDSPDVSQFLQRWLEE---SPGVNLRAPIYDAALLYDAVLLL------------------- 286 (328)
T ss_pred --hhhccCCcceEEEEEeCCCchHHHHHHHhhhhc---cCCCCcCccchhhHhhhcEEEEE-------------------
Confidence 345567899999999999999999999999332 22223333445566666663211
Q ss_pred cccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEee-cCeEEEEEEeeC
Q 008205 350 SKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVI-GTGSRRIGYWSN 421 (574)
Q Consensus 350 ~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~-~~~~~~VG~w~~ 421 (574)
||+++||++|+|.++.++|++++ ..++++||.|+.
T Consensus 287 -------------------------------------tg~i~f~~~g~r~~~~l~i~~l~~~~~~~~vg~W~~ 322 (328)
T cd06351 287 -------------------------------------TGTVSFDEDGVRSNFTLDIIELNRSRGWRKVGTWNG 322 (328)
T ss_pred -------------------------------------EeeEEECCCCcccceEEEEEEecCCCCceEEEEecC
Confidence 89999999999999999999999 889999999984
No 44
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=100.00 E-value=1.2e-35 Score=297.95 Aligned_cols=321 Identities=19% Similarity=0.211 Sum_probs=266.9
Q ss_pred EEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChHH
Q 008205 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 109 (574)
+||++.|++ +..|.....++++|++++|+++++ +|++|++++.|+++++..+++.+++++.+ +|.+|+||.+|..
T Consensus 1 ~IG~~~~lsG~~a~~G~~~~~g~~~A~~~iN~~ggi-~g~~v~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 79 (344)
T cd06345 1 KIGVLAPLSGGASTTGEAMWNGAELAAEEINAAGGI-LGRKVELVFEDTEGSPEDAVRAFERLVSQDKVDAVVGGYSSEV 79 (344)
T ss_pred CeeEEEecCCcccccCHHHHHHHHHHHHHHHHcCCC-CCceEEEEEecCCCCHHHHHHHHHHHhccCCceEEECCcchHH
Confidence 589999998 567899999999999999999987 58999999999999999999999999987 9999999999999
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCC----CCCCceEEecCChHHHHHHHHHHHHH-----cCCeEEEEEEEcCCCCcc
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSS----LQYPFFVRTTQSDLYQMAAIADIVDY-----FGWRNVIALYVDDDHGRN 180 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~----~~~~~~~r~~ps~~~~~~ai~~ll~~-----~~W~~v~ii~~~~~~g~~ 180 (574)
+.++++++..++||+|+++++++.+++ ..+|++||+.|++..+..++++++.+ ++|++|++++.++++|..
T Consensus 80 ~~a~~~~~~~~~vp~i~~~~~~~~~t~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~~~~g~~ 159 (344)
T cd06345 80 VLALQDVAAENKVPFIVTGAASPEITTADDYETYKYVFRAGPTNSSYAQSVADALKETLVDKHGFKTAAIVAEDAAWGKG 159 (344)
T ss_pred HHHHHHHHHHcCCcEEeccCCCCcccccccccCCceEEecCCCcHHHHHHHHHHHHHhhcccCCCceEEEEecCchhhhH
Confidence 999999999999999998887777763 46899999999999999999998876 899999999999999999
Q ss_pred hHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCcc
Q 008205 181 GIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWL 260 (574)
Q Consensus 181 ~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~ 260 (574)
..+.+++.+++.|++|.....++ .+..++..++.+|+..++++|++.+....+..+++++.+.|+... ++....+
T Consensus 160 ~~~~~~~~~~~~G~~vv~~~~~~--~~~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~ 234 (344)
T cd06345 160 IDAGIKALLPEAGLEVVSVERFS--PDTTDFTPILQQIKAADPDVIIAGFSGNVGVLFTQQWAEQKVPIP---TIGISVE 234 (344)
T ss_pred HHHHHHHHHHHcCCeEEEEEecC--CCCCchHHHHHHHHhcCCCEEEEeecCchHHHHHHHHHHcCCCCc---eEEecCC
Confidence 99999999999999998877666 346789999999999999999999999899999999999997432 3333221
Q ss_pred ccccCCCCcCChhhhhhccceEEEEEec----CCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 008205 261 SSILDTDSQLHSEKMDDIQGVLTLRMYT----QSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGA 336 (574)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~ 336 (574)
....... ........|.++..... +.++..++|.++|+++++ ..++.+++..||+++++++|+++
T Consensus 235 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~g-------~~p~~~~~~~yda~~~l~~A~~~ 303 (344)
T cd06345 235 GNSPAFW----KATNGAGNYVITAESGAPGVEAITDKTVPFTEAYEAKFG-------GPPNYMGASTYDSIYILAEAIER 303 (344)
T ss_pred cCCHHHH----HhhchhcceEEeecccccCccCCCHHHHHHHHHHHHHhC-------CCCcccchHHHHHHHHHHHHHHH
Confidence 1100000 11123345555443332 246778999999998875 23567788999999999999998
Q ss_pred HhhcCCCccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCC
Q 008205 337 FFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLIN 400 (574)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~ 400 (574)
+.. .++..+.++|++++|+|++|+|.||++|++..
T Consensus 304 ag~-----------------------------~~~~~i~~al~~~~~~g~~G~i~f~~~g~~~~ 338 (344)
T cd06345 304 AGS-----------------------------TDGDALVEALEKTDFVGTAGRIQFYGDDSAFA 338 (344)
T ss_pred hcC-----------------------------CCHHHHHHHHHhCCCcCCceeEEECCCCCcCc
Confidence 521 14788999999999999999999999999753
No 45
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=100.00 E-value=1.1e-35 Score=298.63 Aligned_cols=328 Identities=15% Similarity=0.163 Sum_probs=271.5
Q ss_pred EEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCC---CCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCC
Q 008205 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAIL---GGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQF 106 (574)
Q Consensus 34 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l---~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~ 106 (574)
+||+++|++ +..|.....++++|+++||.++++. .|++|+++++|+++++..+.+.+.+++++ +|.+||||.+
T Consensus 1 ~IG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~ggi~~g~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviG~~~ 80 (345)
T cd06338 1 RIGASLSLTGPLAGGGQLTQRGYELWVEDVNAAGGIKGGGKGYPVELIYYDDQSNPARAARAYERLITQDKVDFLLGPYS 80 (345)
T ss_pred CeeEEEeCCCccccccHHHHHHHHHHHHHHHhcCCcccCCCCceEEEEEecCCCCHHHHHHHHHHHHhhcCccEEecCCc
Confidence 599999998 5568888999999999999987753 47899999999999999999999999986 9999999999
Q ss_pred hHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcC--CeEEEEEEEcCCCCcchHHH
Q 008205 107 SVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFG--WRNVIALYVDDDHGRNGIAA 184 (574)
Q Consensus 107 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~--W~~v~ii~~~~~~g~~~~~~ 184 (574)
+..+.++++++..++||+|+++++++.+....+|++||+.|++..+..++++++++++ |+++++++.+++++....+.
T Consensus 81 s~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~g~~~~~~ 160 (345)
T cd06338 81 SGLTLAAAPVAEKYGVPMVAGSGASDSIFAQGFKYVFGTLPPASQYAKSLLEMLVALDPRPKKVAILYADDPFSQDVAEG 160 (345)
T ss_pred chhHHHHHHHHHHhCCcEEecCCCCchHhhcCCceEEEecCchHHHHHHHHHHHHhcCCCCceEEEEecCCcccHHHHHH
Confidence 9999999999999999999998877777656789999999999999999999999988 99999999999999999999
Q ss_pred HHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCcccccc
Q 008205 185 LGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSIL 264 (574)
Q Consensus 185 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~ 264 (574)
+++.+++.|++|.....++ ....|+..++++|++.++++|++.+....+..+++++.+.|+..+ ..+.........+
T Consensus 161 ~~~~~~~~g~~v~~~~~~~--~~~~d~~~~v~~l~~~~~d~i~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~ 237 (345)
T cd06338 161 AREKAEAAGLEVVYDETYP--PGTADLSPLISKAKAAGPDAVVVAGHFPDAVLLVRQMKELGYNPK-ALYMTVGPAFPAF 237 (345)
T ss_pred HHHHHHHcCCEEEEEeccC--CCccchHHHHHHHHhcCCCEEEECCcchhHHHHHHHHHHcCCCCC-EEEEecCCCcHHH
Confidence 9999999999998776665 355789999999999999999999999999999999999998644 2222221111100
Q ss_pred CCCCcCChhhhhhccceEEEEEecCC-------ChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 008205 265 DTDSQLHSEKMDDIQGVLTLRMYTQS-------SEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAF 337 (574)
Q Consensus 265 ~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~ 337 (574)
. ........|+++...+.+. .+..++|.++|+++++. .++..+..+||+++++++|++++
T Consensus 238 ~------~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-------~p~~~~~~~y~a~~~~~~a~~~a 304 (345)
T cd06338 238 V------KALGADAEGVFGPTQWTPALDYKDDLFPSAAEFAAAYKEKYGK-------APDYHAAGAYAAGQVLQEAVERA 304 (345)
T ss_pred H------HHHhhhhCceeecceeccCcccccccCccHHHHHHHHHHHhCC-------CCCcccHHHHHHHHHHHHHHHHh
Confidence 0 1122345777776655443 36689999999988752 24556788999999999999975
Q ss_pred hhcCCCccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEE
Q 008205 338 FDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVIN 407 (574)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~ 407 (574)
... ++..+.++|++++|+|++|++.|+++|++.. .+.+++
T Consensus 305 g~~-----------------------------~~~~v~~al~~~~~~~~~G~~~f~~~~~~~~-~~~~~~ 344 (345)
T cd06338 305 GSL-----------------------------DPAAVRDALASNDFDTFYGPIKFDETGQNNH-PMTVVQ 344 (345)
T ss_pred CCC-----------------------------CHHHHHHHHHhCCCcccccCeeECCCCCcCC-Cceeee
Confidence 210 4788999999999999999999999998754 444544
No 46
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=100.00 E-value=8.7e-35 Score=291.87 Aligned_cols=334 Identities=18% Similarity=0.251 Sum_probs=268.1
Q ss_pred EEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChHH
Q 008205 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 109 (574)
+||++.|++ +..|.....++++|+++||+++++. |++|++++.|++++|..+.+.+++++.+ +|.+|+||.++..
T Consensus 1 ~IG~~~plsG~~a~~g~~~~~g~~~a~~~iNa~ggi~-G~~v~lv~~D~~~~p~~a~~~~~~li~~~~v~~iiG~~~s~~ 79 (344)
T cd06348 1 PLGVALALTGNAALYGQEQLAGLKLAEDRFNQAGGVN-GRPIKLVIEDSGGDEAEAINAFQTLINKDRVLAIIGPTLSQQ 79 (344)
T ss_pred CeeEEEeccCchhhcCHhHHHHHHHHHHHHhhcCCcC-CcEEEEEEecCCCChHHHHHHHHHHhhhcCceEEECCCCcHH
Confidence 599999998 5578899999999999999999984 7999999999999999999999999987 9999999999999
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHH-HHHHHHHHHc-CCeEEEEEEEcCC-CCcchHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQM-AAIADIVDYF-GWRNVIALYVDDD-HGRNGIAALG 186 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~-~ai~~ll~~~-~W~~v~ii~~~~~-~g~~~~~~l~ 186 (574)
+.++.+++...+||+|++.++.+.+. ..++|+||+.|++..+. .++..+++++ +|++++++|.+++ +|....+.++
T Consensus 80 ~~a~~~~~~~~~ip~i~~~~~~~~~~-~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~g~~~~~~~~ 158 (344)
T cd06348 80 AFAADPIAERAGVPVVGPSNTAKGIP-EIGPYVFRVSAPEAVVAPAAIAAALKLNPGIKRVAVFYAQDDAFSVSETEIFQ 158 (344)
T ss_pred HHhhhHHHHhCCCCEEeccCCCCCcC-CCCCeEEEccCcHHHHHHHHHHHHHHHhcCCeEEEEEEeCCchHHHHHHHHHH
Confidence 99999999999999999876665543 35689999987766544 4455667888 9999999997655 8999999999
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCC
Q 008205 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDT 266 (574)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~ 266 (574)
+.+++.|+++.....++ .+..|+..++.+|+++++++|++.+.+..+..+++++++.|+... |+....+... ..
T Consensus 159 ~~~~~~g~~v~~~~~~~--~~~~d~~~~v~~i~~~~~d~vi~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~-~~ 232 (344)
T cd06348 159 KALRDQGLNLVTVQTFQ--TGDTDFQAQITAVLNSKPDLIVISALAADGGNLVRQLRELGYNGL---IVGGNGFNTP-NV 232 (344)
T ss_pred HHHHHcCCEEEEEEeeC--CCCCCHHHHHHHHHhcCCCEEEECCcchhHHHHHHHHHHcCCCCc---eeccccccCH-HH
Confidence 99999999999877776 356789999999999999999999999999999999999998643 5544332111 11
Q ss_pred CCcCChhhhhhccceEEEEEecC--CChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCc
Q 008205 267 DSQLHSEKMDDIQGVLTLRMYTQ--SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNI 344 (574)
Q Consensus 267 ~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~ 344 (574)
. .......+|++....+.+ ..+..++|.+.|+++++ ..++.++..+||+++++++|++++..++...
T Consensus 233 ~----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g-------~~p~~~~~~~yda~~~~~~A~~~a~~~~~~~ 301 (344)
T cd06348 233 F----PVCQAACDGVLVAQAYSPENDTPVNRDFVEAYKKKYG-------KAPPQFSAQAFDAVQVVAEALKRLNQKQKLA 301 (344)
T ss_pred H----HhhhHhhcCeEEEeeccCCCCCHHHHHHHHHHHHHHC-------CCccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 0 122346677777665543 34678999999988875 2345678889999999999999985432110
Q ss_pred cccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEE
Q 008205 345 SFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEV 405 (574)
Q Consensus 345 ~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i 405 (574)
.|.. -..+..|.++|++++|+|++|+|.||++|++.+..|-|
T Consensus 302 ----------------~~~~---~~~~~~l~~~l~~~~~~g~~G~v~f~~~g~~~~~~~~~ 343 (344)
T cd06348 302 ----------------ELPL---PELRTALNAALLSGQYDTPLGEISFTPDGEVLQKAFYV 343 (344)
T ss_pred ----------------cchh---hhHHHHHHHHHhccCCccceeeeEECCCCCcccCceec
Confidence 0100 01367899999999999999999999999988766543
No 47
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=100.00 E-value=3.5e-35 Score=290.15 Aligned_cols=303 Identities=21% Similarity=0.283 Sum_probs=256.5
Q ss_pred EEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChHH
Q 008205 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 109 (574)
+||++.|++ +..|.....++++|+++||+++++ .|++|+++++|+++++..+.+.+.+++.+ +|.+|+||.+|..
T Consensus 1 kIG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi-~G~~iel~~~D~~~~p~~a~~~a~~li~~~~v~~viG~~~s~~ 79 (312)
T cd06346 1 KIGILLPLTGDLASYGPPMADAAELAVKEVNAAGGV-LGEPVTLVTADTQTDPAAGVAAATKLVNVDGVPGIVGAACSGV 79 (312)
T ss_pred CceeeccCCCchhhcChhHHHHHHHHHHHHHHhCCC-CCceEEEEECCCCCCHHHHHHHHHHHHhhcCCCEEEccccchh
Confidence 589999998 456788999999999999999998 68999999999999999999999999986 9999999999999
Q ss_pred HHHH-HHhhccCCccEEecccCCCCcCC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHH
Q 008205 110 AHLV-SHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGD 187 (574)
Q Consensus 110 ~~~v-a~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~ 187 (574)
+.++ ++++.+.++|+|++.++++.+++ ..++|+||+.|++..+..++++++.+++|+++++||.++++|......+++
T Consensus 80 ~~a~~~~~~~~~~vp~i~~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~l~~~~~~~~~~~vail~~~~~~g~~~~~~~~~ 159 (312)
T cd06346 80 TIAALTSVAVPNGVVMISPSSTSPTLTTLDDNGLFFRTAPSDALQGQALAQLAAERGYKSVATTYINNDYGVGLADAFTK 159 (312)
T ss_pred hHhhhhhhhccCCcEEEecCCCCccceecCCCceEEEecCCcHHHHHHHHHHHHHcCCCeEEEEEccCchhhHHHHHHHH
Confidence 9999 99999999999999888888876 357899999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCC
Q 008205 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTD 267 (574)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~ 267 (574)
.+++.|++|.....++ ....|+..++.++++.++++|++.+.+..+..+++++++.|+... |+.++..... ...
T Consensus 160 ~~~~~G~~vv~~~~~~--~~~~d~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~~~~~G~~~~---~~~~~~~~~~-~~~ 233 (312)
T cd06346 160 AFEALGGTVTNVVAHE--EGKSSYSSEVAAAAAGGPDALVVIGYPETGSGILRSAYEQGLFDK---FLLTDGMKSD-SFL 233 (312)
T ss_pred HHHHcCCEEEEEEeeC--CCCCCHHHHHHHHHhcCCCEEEEecccchHHHHHHHHHHcCCCCc---eEeeccccCh-HHH
Confidence 9999999999877776 457889999999999999999999999999999999999998433 6766542221 100
Q ss_pred CcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 008205 268 SQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFS 347 (574)
Q Consensus 268 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~ 347 (574)
. .......+|+++..+..+ .+..++|.++|+++++. .++.+++..||+++++++|
T Consensus 234 ~---~~~~~~~~g~~~~~~~~~-~~~~~~f~~~~~~~~g~-------~p~~~~~~~Yd~~~~l~~A-------------- 288 (312)
T cd06346 234 P---ADGGYILAGSYGTSPGAG-GPGLEAFTSAYKAAYGE-------SPSAFADQSYDAAALLALA-------------- 288 (312)
T ss_pred H---hhhHHHhCCcEEccCCCC-chhHHHHHHHHHHHhCC-------CCCccchhhHHHHHHHHHH--------------
Confidence 0 111235678777655433 37789999999998852 3566788999999998755
Q ss_pred CCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEE
Q 008205 348 EDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYE 404 (574)
Q Consensus 348 ~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~ 404 (574)
|.|++|++.||++|++.. .|+
T Consensus 289 -----------------------------------~~g~~g~~~f~~~g~~~~-~~~ 309 (312)
T cd06346 289 -----------------------------------YQGASGVVDFDENGDVAG-SYD 309 (312)
T ss_pred -----------------------------------hCCCccceeeCCCCCccc-cee
Confidence 567899999999998754 554
No 48
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=100.00 E-value=4.6e-34 Score=286.45 Aligned_cols=324 Identities=20% Similarity=0.280 Sum_probs=267.7
Q ss_pred EEEEEeccC---CccchhHHHHHHHHHHHHhcCCCC--CCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCCh
Q 008205 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAI--LGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFS 107 (574)
Q Consensus 34 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~--l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s 107 (574)
+||++.|++ +..|.....++++|+++||+++++ ++|++|+++++|+++++..+.+.+++++++ +|.+|+||.+|
T Consensus 1 ~IG~~~p~sG~~a~~g~~~~~g~~lA~~~iN~~GGi~~i~G~~v~lv~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s 80 (347)
T cd06340 1 KIGVLLPLSGGLAAIGQQCKAGAELAVEEINAAGGIKSLGGAKLELVFGDSQGNPDIGATEAERLITEEGVVALVGAYQS 80 (347)
T ss_pred CceeEecCCchhhhhCHHHHHHHHHHHHHHHhcCCccCCCCceEEEEEecCCCCHHHHHHHHHHHhccCCceEEecccch
Confidence 599999998 457888999999999999999863 478999999999999999999999999988 99999999999
Q ss_pred HHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHc------CCeEEEEEEEcCCCCcch
Q 008205 108 VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF------GWRNVIALYVDDDHGRNG 181 (574)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~------~W~~v~ii~~~~~~g~~~ 181 (574)
..+.+++++++..+||+|++.++++.+++..+||+||+.|++..++.++++++.++ +|+++++|++++++|...
T Consensus 81 ~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~g~~~ 160 (347)
T cd06340 81 AVTLAASQVAERYGVPFVVDGAVSDSITERGFKYTFRITPHDGMFTRDMFDFLKDLNEKTGKPLKTVALVHEDTEFGTSV 160 (347)
T ss_pred HhHHHHHHHHHHhCCCEEeccccchHHhhcCCceEEecCCChHHHHHHHHHHHHHhhHhcCCCCceEEEEecCchHhHHH
Confidence 99999999999999999998877777776678999999999999999999999876 459999999999999999
Q ss_pred HHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccc
Q 008205 182 IAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLS 261 (574)
Q Consensus 182 ~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~ 261 (574)
.+.+++.+++.|++|.....++. ...|+..++.+|++.++++|++.+....+..+++++++.|+... .++....+..
T Consensus 161 ~~~~~~~~~~~G~~vv~~~~~~~--~~~d~~~~i~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~~~ 237 (347)
T cd06340 161 AEAIKKFAKERGFEIVEDISYPA--NARDLTSEVLKLKAANPDAILPASYTNDAILLVRTMKEQRVEPK-AVYSVGGGAE 237 (347)
T ss_pred HHHHHHHHHHcCCEEEEeeccCC--CCcchHHHHHHHHhcCCCEEEEcccchhHHHHHHHHHHcCCCCc-EEEecCCCcC
Confidence 99999999999999998777763 46789999999999999999999999999999999999998543 2222222111
Q ss_pred cccCCCCcCChhhhhhccceEEEEEecCC-ChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhc
Q 008205 262 SILDTDSQLHSEKMDDIQGVLTLRMYTQS-SEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQ 340 (574)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~ 340 (574)
.. ... .......+|++...++.+. .+..++|.++|+++++. .++..+...||+++++++|++++...
T Consensus 238 ~~-~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~y~~~~~~-------~~~~~~~~~Y~a~~~l~~A~~~ag~~ 305 (347)
T cd06340 238 DP-SFV----KALGKDAEGILTRNEWSDPKDPMAKDLNKRFKARFGV-------DLSGNSARAYTAVLVIADALERAGSA 305 (347)
T ss_pred cH-HHH----HHhhHhhheEEeccccCCCCChHHHHHHHHHHHHhCC-------CCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 10 000 1222456788777665543 67789999999988752 25677889999999999999986211
Q ss_pred CCCccccCCcccccccCCCcccccccccCchHHHH--HHHHhcccc---cccccEEEcCCCCCCCC
Q 008205 341 GGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLL--DNILQVNMT---GVTGPIKFTSDRDLINP 401 (574)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~--~~l~~~~f~---G~tG~v~Fd~~G~r~~~ 401 (574)
++..+. ..|+++.+. +.+|+++||++|+..+.
T Consensus 306 -----------------------------~~~~v~~~~~~~~~~~~~~~~~~g~~~f~~~g~~~~~ 342 (347)
T cd06340 306 -----------------------------DPEKIRDLAALASTSGEDLIMPYGPIKFDAKGQNTNA 342 (347)
T ss_pred -----------------------------CHHHHHHHHHhccCCccccccCCCCeeECCCCCcccc
Confidence 467777 488888776 46789999999986544
No 49
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=100.00 E-value=5e-33 Score=278.41 Aligned_cols=320 Identities=20% Similarity=0.283 Sum_probs=263.8
Q ss_pred EEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChHH
Q 008205 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 109 (574)
+||+++|++ +..|.....++++|+++||+++++ +|++|++++.|+++++..+.+.+++++.+ +|.+||||.++..
T Consensus 1 ~iG~~~~~sG~~~~~g~~~~~g~~~a~~~iN~~ggi-~g~~l~~~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~~~s~~ 79 (334)
T cd06347 1 KIGVNLPLTGDVAAYGQSEKNGAKLAVKEINAAGGV-LGKKIELVVEDNKSDKEEAANAATRLIDQDKVVAIIGPVTSGA 79 (334)
T ss_pred CeeEEecCCchhhhcCHhHHHHHHHHHHHHHhcCCC-CCeeEEEEEecCCCChHHHHHHHHHHhcccCeEEEEcCCccHh
Confidence 589999998 456778899999999999999886 68999999999999999999999999987 9999999999999
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH-HHcCCeEEEEEEEcC-CCCcchHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV-DYFGWRNVIALYVDD-DHGRNGIAALGD 187 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll-~~~~W~~v~ii~~~~-~~g~~~~~~l~~ 187 (574)
+..++++++..+||+|++.++.+.+++.. +++||+.|++..++.++++++ ++++|+++++||.++ +++....+.+++
T Consensus 80 ~~~v~~~~~~~~ip~i~~~~~~~~~~~~~-~~~fr~~~~~~~~~~~~~~~~~~~~~~~~v~ii~~~~~~~~~~~~~~~~~ 158 (334)
T cd06347 80 TLAAGPIAEDAKVPMITPSATNPKVTQGK-DYVFRVCFIDPFQGTVMAKFATENLKAKKAAVLYDNSSDYSKGLAKAFKE 158 (334)
T ss_pred HHHhHHHHHHCCCeEEcCCCCCCCcccCC-CeEEEeeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCchhHHHHHHHHH
Confidence 99999999999999999887776665532 589999999988999999986 678999999999875 788888889999
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCC
Q 008205 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTD 267 (574)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~ 267 (574)
.+++.|+++.....++ .+..++...++++++.++++|++.+.......+++++.+.|+. ..|+.++.|......
T Consensus 159 ~~~~~g~~v~~~~~~~--~~~~d~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~~~~g~~---~~i~~~~~~~~~~~~- 232 (334)
T cd06347 159 AFKKLGGEIVAEETFN--AGDTDFSAQLTKIKAKNPDVIFLPGYYTEVGLIAKQARELGIK---VPILGGDGWDSPKLE- 232 (334)
T ss_pred HHHHcCCEEEEEEEec--CCCCcHHHHHHHHHhcCCCEEEEcCchhhHHHHHHHHHHcCCC---CcEEecccccCHHHH-
Confidence 9999999998876666 3456799999999999999999999999999999999999874 347766544321100
Q ss_pred CcCChhhhhhccceEEEEEecCC--ChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 008205 268 SQLHSEKMDDIQGVLTLRMYTQS--SEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNIS 345 (574)
Q Consensus 268 ~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~ 345 (574)
........|++....+.+. .+..++|.+.|+++++ ..++.++...||++++++.|++++...
T Consensus 233 ----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~-------~~~~~~~~~~yda~~~~~~Al~~ag~~----- 296 (334)
T cd06347 233 ----EAGGAAAEGVYFTTHFSADDPTPKAKKFVKAYKAKYG-------KEPDAFAALGYDAYYLLADAIERAGST----- 296 (334)
T ss_pred ----HHHHHHhCCcEEecccCCCCCCHHHHHHHHHHHHHHC-------CCcchhHHHHHHHHHHHHHHHHHhCCC-----
Confidence 1122467777776655443 5678999999988764 235667889999999999999874210
Q ss_pred ccCCcccccccCCCcccccccccCchHHHHHHHHhc-ccccccccEEEcCCCCCCCC
Q 008205 346 FSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQV-NMTGVTGPIKFTSDRDLINP 401 (574)
Q Consensus 346 ~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~-~f~G~tG~v~Fd~~G~r~~~ 401 (574)
++..+.+.|++. .|+|++|++.|+.+|+..+.
T Consensus 297 ------------------------~~~~v~~~l~~~~~~~g~~G~v~f~~~g~~~~~ 329 (334)
T cd06347 297 ------------------------DPEAIRDALAKTKDFDGVTGKITIDENGNPVKS 329 (334)
T ss_pred ------------------------CHHHHHHHHHhCCCcccceeeeEECCCCCcCCC
Confidence 478888888765 79999999999999886543
No 50
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=100.00 E-value=3.3e-33 Score=278.69 Aligned_cols=320 Identities=18% Similarity=0.153 Sum_probs=260.6
Q ss_pred EEEEEeccC--CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChHHH
Q 008205 34 NIGAVFALN--STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSVIA 110 (574)
Q Consensus 34 ~IG~l~~~~--~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~~ 110 (574)
+||++.|++ +..|.....++++|+++||+.+++ +|++|++++.|+++++..+.+.+.+|+.+ +|.+|+|+.+|..+
T Consensus 1 ~iG~~~p~sG~a~~G~~~~~g~~lA~~~iNa~ggi-~G~~ielv~~D~~~~p~~a~~~a~~li~~~~v~aiiG~~~s~~~ 79 (332)
T cd06344 1 TIAVVVPIGKNPNLAEEILRGVAQAQTEINLQGGI-NGKLLKVVIANDGNDPEIAKKVADELVKDPEILGVVGHYSSDAT 79 (332)
T ss_pred CeEEEEecCCChhhHHHHHHHHHHHHHHHHhcCCC-CCCeEEEEEECCCCChHHHHHHHHHHhcccCceEEEcCCCcHHH
Confidence 489999998 567888999999999999999988 58999999999999999999999999977 99999999999999
Q ss_pred HHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcC-CeEEEEEEEcCC-CCcchHHHHHHH
Q 008205 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFG-WRNVIALYVDDD-HGRNGIAALGDK 188 (574)
Q Consensus 111 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~-W~~v~ii~~~~~-~g~~~~~~l~~~ 188 (574)
.++++++...+||+|++.++++.++ ..+||+||+.|++..+..++++++++++ |+++++||.++. ||....+.+++.
T Consensus 80 ~a~~~~~~~~~ip~i~~~a~~~~lt-~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~g~~~~~~~~~~ 158 (332)
T cd06344 80 LAALDIYQKAKLVLISPTSTSVKLS-NPGPYFFRTVPSNAVAARALAKYLKKKNKIKKVAIFYNSTSPYSQSLKQEFTSA 158 (332)
T ss_pred HHHHHHHhhcCceEEccCcCchhhc-CCCCcEEEeCCCcHHHHHHHHHHHHhhcCCCeEEEEeCCCchHhHHHHHHHHHH
Confidence 9999999999999999877777666 4579999999999999999999998876 999999998876 999999999999
Q ss_pred Hhh-cCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCC
Q 008205 189 LAE-KRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTD 267 (574)
Q Consensus 189 ~~~-~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~ 267 (574)
+++ .|.++.....++ ....++..++.++++.++++|++.+.......+++++.+.+. ...++.++.+... +..
T Consensus 159 ~~~~~g~~v~~~~~~~--~~~~~~~~~v~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~-~~~ 232 (332)
T cd06344 159 LLERGGGIVVTPCDLS--SPDFNANTAVSQAINNGATVLVLFPDTDTLDKALEVAKANKG---RLTLLGGDSLYTP-DTL 232 (332)
T ss_pred HHHhcCCeeeeeccCC--CCCCCHHHHHHHHHhcCCCEEEEeCChhHHHHHHHHHHhcCC---CceEEecccccCH-HHH
Confidence 999 588876544333 345568889999999999999999888888888999888664 2334444332211 110
Q ss_pred CcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 008205 268 SQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFS 347 (574)
Q Consensus 268 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~ 347 (574)
.......+|+++..++.+..+..++|.+.|+++++ ..++..++..||+++++++|++++...
T Consensus 233 ----~~~~~~~~G~~~~~~~~~~~~~~~~f~~~~~~~~~-------~~~~~~a~~~Yda~~~l~~A~~~ag~~------- 294 (332)
T cd06344 233 ----LDGGKDLEGLVLAVPWHPLASPNSPFAKLAQQLWG-------GDVSWRTATAYDATKALIAALSQGPTR------- 294 (332)
T ss_pred ----HhchhhhcCeEEEEecccccccchHHHHHHHHHhc-------CCchHHHHhHHHHHHHHHHHHHhCCCh-------
Confidence 11124567888877777666678999999998875 235677899999999999999975211
Q ss_pred CCcccccccCCCcccccccccCchHHHH-HHHHhcccccccccEEEcCCCCCCCC
Q 008205 348 EDSKLSELSRGDMRFSSVSIFNGGKMLL-DNILQVNMTGVTGPIKFTSDRDLINP 401 (574)
Q Consensus 348 ~~~~~~~~~~~~~~c~~~~~~~~g~~l~-~~l~~~~f~G~tG~v~Fd~~G~r~~~ 401 (574)
++..+. ..+++..|+|..|+++||++|++.+.
T Consensus 295 ----------------------~~~~~~~~~~~~~~~~g~~g~i~f~~~g~~~~~ 327 (332)
T cd06344 295 ----------------------EGVQQVELSLRNFSVQGATGKIKFLPSGDRNGQ 327 (332)
T ss_pred ----------------------hhhhhhhhhcccccccCCCceeEeCCCCcccCc
Confidence 234444 67778889999999999999997643
No 51
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=100.00 E-value=1.7e-32 Score=274.73 Aligned_cols=314 Identities=15% Similarity=0.170 Sum_probs=262.1
Q ss_pred EEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHH
Q 008205 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIA 110 (574)
Q Consensus 34 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~ 110 (574)
+||++.|++ +..|.....++++|+++||+.+++. |++|+++++|+++++.++++.++++++++|.+|+||.+|..+
T Consensus 1 ~IG~l~p~sG~~a~~G~~~~~g~~~a~~~iN~~GGi~-G~~i~l~~~D~~~~p~~a~~~a~~lv~~~v~aiiG~~~s~~~ 79 (342)
T cd06329 1 KIGVIDPLSGPFASLGELVRRGLQLAADEINAKGGVD-GRPIELVEEDNKGSPQEALRKAQKAIDDGVRLVVQGNSSSVA 79 (342)
T ss_pred CeeeeccCCCCcccccHHHHHHHHHHHHHHHhcCCcC-CeEEEEEeccCCCChHHHHHHHHHHHHhCCeEEEcccchHHH
Confidence 589999998 4578889999999999999999884 799999999999999999999999999999999999999998
Q ss_pred HHH-------HHhhccCCccEEecccCCCCcCC-CCCCceEEecCChHHHHHHHHHHHHHcC-CeEEEEEEEcCCCCcch
Q 008205 111 HLV-------SHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFG-WRNVIALYVDDDHGRNG 181 (574)
Q Consensus 111 ~~v-------a~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~ll~~~~-W~~v~ii~~~~~~g~~~ 181 (574)
.++ ++++..++||+|++.++++.+.. ..++++||+.|++..+..++++++.+.+ |+++++++.++.+|...
T Consensus 80 ~~~~~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~l~~~~~~~~~~k~v~i~~~~~~~g~~~ 159 (342)
T cd06329 80 LALTEAVRKHNQRNPGKEVLYLNYASVAPALTGEKCSFWHFRTDANTDMKMEALASYIKKQPDGKKVYLINQDYSWGQDV 159 (342)
T ss_pred HHhhhhhhhhhhhhccCCeEEEecCCCCchhhhccCcceEEEecCChHHHHHHHHHHHHhcccCceEEEEeCChHHHHHH
Confidence 888 78888999999998777777766 4579999999999999999999998876 99999999999999999
Q ss_pred HHHHHHHHhh--cCcEEEEEeecCCCCCh-hhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeC
Q 008205 182 IAALGDKLAE--KRCRLSHKVPLSPKGSR-NQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD 258 (574)
Q Consensus 182 ~~~l~~~~~~--~g~~v~~~~~~~~~~~~-~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~ 258 (574)
.+.+++.+++ .|+++.....++ .+. .|+..++.++++.++++|++......+..+++++++.|+..+ |+...
T Consensus 160 ~~~~~~~~~~~~~G~~vv~~~~~~--~~~~~d~~~~i~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~ 234 (342)
T cd06329 160 AAAFKAMLAAKRPDIQIVGEDLHP--LGKVKDFSPYVAKIKASGADTVITGNWGNDLLLLVKQAADAGLKLP---FYTPY 234 (342)
T ss_pred HHHHHHHHHhhcCCcEEeceeccC--CCCCCchHHHHHHHHHcCCCEEEEcccCchHHHHHHHHHHcCCCce---EEecc
Confidence 9999999999 899998776665 355 789999999999999999998878888999999999998543 55443
Q ss_pred ccccccCCCCcCChhhhhhccceEEEEEecC--CChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 008205 259 WLSSILDTDSQLHSEKMDDIQGVLTLRMYTQ--SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGA 336 (574)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~ 336 (574)
..... .. ........|++....+.+ ..+..++|.++|+++++ ..++..+..+||++++++.|+++
T Consensus 235 ~~~~~--~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~-------~~~~~~~~~~y~~~~~~~~a~~~ 301 (342)
T cd06329 235 LDQPG--NP----AALGEAGLGLVVAVAYWHPNDTPANRAFVEAFKAKYG-------RVPDYYEGQAYNGIQMLADAIEK 301 (342)
T ss_pred ccchh--HH----HhhcccccceEEeeeccCCCCCHHHHHHHHHHHHHhC-------CCCCchHHHHHHHHHHHHHHHHH
Confidence 32211 10 112234567766655433 35778999999988774 23456788899999999999997
Q ss_pred HhhcCCCccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCC
Q 008205 337 FFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSD 395 (574)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~ 395 (574)
.... ++..+.+.|++++|+|..|+++|+..
T Consensus 302 ag~~-----------------------------~~~~v~~al~~~~~~~~~g~~~~~~~ 331 (342)
T cd06329 302 AGST-----------------------------DPEAVAKALEGMEVDTPVGPVTMRAS 331 (342)
T ss_pred hCCC-----------------------------CHHHHHHHHhCCccccCCCCeEEccc
Confidence 4110 47889999999999999999999853
No 52
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=100.00 E-value=2.1e-32 Score=273.17 Aligned_cols=320 Identities=15% Similarity=0.113 Sum_probs=262.0
Q ss_pred EEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChHH
Q 008205 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 109 (574)
+||+++|++ +..|.....++++|+++||+++++ .|++|++++.|++++|..+.+++++|+.+ +|.+|+||.+|..
T Consensus 1 ~IG~l~p~sG~~a~~g~~~~~g~~~a~~~iN~~gGi-~G~~i~l~~~D~~~~p~~a~~~a~~Li~~~~V~aiiG~~~s~~ 79 (333)
T cd06331 1 KIGLLFSLSGPAAISEPSLRNAALLAIEEINAAGGI-LGRPLELVVEDPASDPAFAAKAARRLIRDDKVDAVFGCYTSAS 79 (333)
T ss_pred CeEEEecCCCccccccHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEECCCCCHHHHHHHHHHHHhccCCcEEEecccHHH
Confidence 599999998 456788999999999999999988 58999999999999999999999999987 9999999999999
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKL 189 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~ 189 (574)
+.++.++++..+||+|++.+.... ...+++||+.|++..+..++++++...+|+++++|+.++.+|....+.+++.+
T Consensus 80 ~~a~~~~~~~~~vp~i~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~il~~d~~~g~~~~~~~~~~~ 156 (333)
T cd06331 80 RKAVLPVVERGRGLLFYPTQYEGG---ECSPNVFYTGATPNQQLLPLIPYLMEKYGKRFYLIGSDYVWPRESNRIARALL 156 (333)
T ss_pred HHHHHHHHHhcCceEEeCCCCCCC---cCCCCeEEccCChHHhHHHHHHHHHHhcCCeEEEECCCchhHHHHHHHHHHHH
Confidence 999999999999999986443221 23589999999999999999998766669999999999999999999999999
Q ss_pred hhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCc
Q 008205 190 AEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQ 269 (574)
Q Consensus 190 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~ 269 (574)
++.|.++.....++ .+..|+..++.+++..++++|++.+...+...+++++.+.|+......++ +...... ...
T Consensus 157 ~~~G~~vv~~~~~~--~~~~d~~~~v~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~-~~~-- 230 (333)
T cd06331 157 EELGGEVVGEEYLP--LGTSDFGSVIEKIKAAGPDVVLSTLVGDSNVAFYRQFAAAGLDADRIPIL-SLTLDEN-ELA-- 230 (333)
T ss_pred HHcCCEEEEEEEec--CCcccHHHHHHHHHHcCCCEEEEecCCCChHHHHHHHHHcCCCcCCCeeE-Ecccchh-hhh--
Confidence 99999998877777 45788999999999999999999999889999999999999863333333 3221111 110
Q ss_pred CChhhhhhccceEEEEEecC--CChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 008205 270 LHSEKMDDIQGVLTLRMYTQ--SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFS 347 (574)
Q Consensus 270 ~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~ 347 (574)
........|++...++.+ ..+..+.|.++|+++++. ...++..++..||+++++++|++++.+
T Consensus 231 --~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-----~~~~~~~~~~~yda~~~~~~A~~~ag~-------- 295 (333)
T cd06331 231 --AIGAEAAEGHYSAASYFQSLDTPENKAFVARYRARYGD-----DAVINSPAEAAYEAVYLWAAAVEKAGS-------- 295 (333)
T ss_pred --ccChhhhCCcEeechhhhhcCChhHHHHHHHHHHHcCC-----CcCCCchhHHHHHHHHHHHHHHHHcCC--------
Confidence 111134577777655433 456788999999887642 113567789999999999999997421
Q ss_pred CCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCC
Q 008205 348 EDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLI 399 (574)
Q Consensus 348 ~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~ 399 (574)
.++..|.++|++++|+|++|.+.|++++++.
T Consensus 296 ---------------------~~~~~l~~al~~~~~~~~~G~i~f~~~~~~~ 326 (333)
T cd06331 296 ---------------------TDPEAVRAALEGVSFDAPQGPVRIDPDNHHT 326 (333)
T ss_pred ---------------------CCHHHHHHHhhcCcccCCCCceEecCCCCcc
Confidence 0488999999999999999999999988765
No 53
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=100.00 E-value=5.5e-32 Score=271.19 Aligned_cols=330 Identities=14% Similarity=0.087 Sum_probs=264.8
Q ss_pred EEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChHH
Q 008205 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 109 (574)
+||++.|++ +..|.....++++|+++||+.++++ |++|+++++|++++|.++.+.+.+|+.+ +|.+|+|+.+|..
T Consensus 1 kIG~~~plsG~~a~~G~~~~~g~~la~~~iN~~GGi~-G~~ielv~~D~~~~p~~a~~~a~~Li~~~~V~~iiG~~~S~~ 79 (348)
T cd06355 1 KVGILHSLSGTMAISETTLKDAELLAIEEINAAGGVL-GRKIEAVVEDGASDWPTFAEKARKLLTQDKVAAVFGCWTSAS 79 (348)
T ss_pred CeEEEEcCCCcccccchhHHHHHHHHHHHHHhcCCCC-CcEEEEEEeCCCCCHHHHHHHHHHHHHhCCCcEEEeccchhh
Confidence 599999998 5578889999999999999999996 8999999999999999999999999975 8999999999999
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHH-cCCeEEEEEEEcCCCCcchHHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDY-FGWRNVIALYVDDDHGRNGIAALGDK 188 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~-~~W~~v~ii~~~~~~g~~~~~~l~~~ 188 (574)
+.++.+++...++|++++..... ...+|++||+.+.+..+...+++++.. .+++++++++.|++||....+.+++.
T Consensus 80 ~~a~~~~~~~~~~~~i~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~k~vaii~~d~~~g~~~~~~~~~~ 156 (348)
T cd06355 80 RKAVLPVFERHNGLLFYPVQYEG---LEQSPNVFYTGAAPNQQIIPAVDWLMSNKGGKRFYLVGSDYVYPRTANKILKAQ 156 (348)
T ss_pred HHHHHHHHhccCCceecCCCccC---CCCCCCEEEeCCChHHhHHHHHHHHHhccCCCeEEEECCcchHHHHHHHHHHHH
Confidence 99999999999999997643221 134689999999999888888887664 57999999999999999999999999
Q ss_pred HhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCC
Q 008205 189 LAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDS 268 (574)
Q Consensus 189 ~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~ 268 (574)
+++.|++++....++ ....|+..++.++++.++++|++......+..+++++++.|+......++........+.
T Consensus 157 ~~~~G~~vv~~~~~~--~~~~D~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~--- 231 (348)
T cd06355 157 LESLGGEVVGEEYLP--LGHTDFQSIINKIKAAKPDVVVSTVNGDSNVAFFKQLKAAGITASKVPVLSFSVAEEELR--- 231 (348)
T ss_pred HHHcCCeEEeeEEec--CChhhHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHcCCCccCCeeEEccccHHHHh---
Confidence 999999999887776 467899999999999999999998888889999999999998654445554432211111
Q ss_pred cCChhhhhhccceEEEEEe--cCCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 008205 269 QLHSEKMDDIQGVLTLRMY--TQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISF 346 (574)
Q Consensus 269 ~~~~~~~~~~~g~~~~~~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~ 346 (574)
.-......|+++...+ ....+..+.|.++|+++++.. ..+...++..||+++++++|++++...
T Consensus 232 ---~~g~~~~~g~~~~~~~~~~~~~~~~~~f~~~y~~~~g~~-----~~~~~~a~~~Y~a~~~~~~Al~~ag~~------ 297 (348)
T cd06355 232 ---GIGPENLAGHYAAWNYFQSVDTPENKKFVAAFKARYGQD-----RVTNDPMEAAYIGVYLWKQAVEKAGSF------ 297 (348)
T ss_pred ---hcChHhhcCCEEeccchhhcCCHHHHHHHHHHHHHcCCC-----CCCCcHHHHHHHHHHHHHHHHHHhCCC------
Confidence 0011345676554332 234677899999998887521 123445778999999999999986210
Q ss_pred cCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEee
Q 008205 347 SEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVI 409 (574)
Q Consensus 347 ~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~ 409 (574)
++..|.++|++++|++..|.++|++.++.....+.|.+++
T Consensus 298 -----------------------~~~~i~~aL~~~~~~~~~g~~~f~~~~~~~~~~~~i~~~~ 337 (348)
T cd06355 298 -----------------------DVDKVRAALPGQSFDAPEGPVTVDPANHHLWKPVRIGRIQ 337 (348)
T ss_pred -----------------------CHHHHHHHhccCcccCCCcceEeecCCCeeeeeeEEEEEc
Confidence 4789999999999999999999998544333445566664
No 54
>KOG1055 consensus GABA-B ion channel receptor subunit GABABR1 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=4.8e-34 Score=286.21 Aligned_cols=372 Identities=22% Similarity=0.333 Sum_probs=293.6
Q ss_pred CCeEEEEEEeccCC-----ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc--CcEEEE
Q 008205 30 PPVLNIGAVFALNS-----TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN--ETVAII 102 (574)
Q Consensus 30 ~~~i~IG~l~~~~~-----~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~--~v~aii 102 (574)
.-+.+|++++|+.. ..|+....|+++|++++|+++.+|||++|.++.+|++|++.+++++..+++-. ...+++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~~~~Pav~~Al~~vn~~~~ilp~y~L~~~~~ds~C~~~~g~k~~fdll~~~p~k~mll 118 (865)
T KOG1055|consen 39 RCPRRIVGIGPLGPGSGGWPGGQACLPAVELALEDVNSRSDILPGYRLKLIHHDSECDPGQGTKALYDLLYNGPNKLMLL 118 (865)
T ss_pred CCCceeeeeecCccccCCCcCcccccHHHHHHHHHhhccccccCCcEEEEEeccccCCccccHHHHHHHHHcCCchheec
Confidence 34678888888872 34678899999999999999999999999999999999999999999999977 455677
Q ss_pred cCCChHHHHHHHHhhccCCccEEecccCCCCcCC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcch
Q 008205 103 GPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNG 181 (574)
Q Consensus 103 Gp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~ 181 (574)
|. |+..+..++.-+..|+.-+++|++++|.+++ +.||+|||++||.......+..++++|+|++++.+++..+-...-
T Consensus 119 ~G-Cs~v~~~iaea~~~w~l~~lsy~~ssp~ls~r~rfp~~frt~PS~~~~np~rl~l~~~~~w~rvgt~~q~e~~f~~~ 197 (865)
T KOG1055|consen 119 GG-CSSVTTLIAEAAKMWNLIVLSYGASSPALSNRKRFPTFFRTHPSANAHNPTRIKLLKKFGWKRVATLQQTEEVFSST 197 (865)
T ss_pred cC-CCCcchHHHhhccccceeeecccCCCccccchhhcchhhhcCCccccCCcceeeechhcCcceeeeeeeehhhhcch
Confidence 76 9999999999999999999999999999998 689999999999999999999999999999999999988877778
Q ss_pred HHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccc
Q 008205 182 IAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLS 261 (574)
Q Consensus 182 ~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~ 261 (574)
.+.+...+.+.+++++.+..+. .|....++.++..+.|+|+-..+...++.+++++++.+|.+.+|+|++..|..
T Consensus 198 ~~dl~~~~~~~~ieiv~~qsf~-----~dp~~~vk~l~~~D~RiI~g~f~~~~Arkv~C~~Y~~~myg~ky~w~~~g~y~ 272 (865)
T KOG1055|consen 198 LNDLEARLKEAGIEIVFRQSFS-----SDPADSVKNLKRQDARIIVGLFYETEARKVFCEAYKERLYGRKYVWFLIGWYA 272 (865)
T ss_pred HHHHHHhhhccccEEEEeeccc-----cCHHHHHhhccccchhheeccchHhhhhHHHHhhchhhcccceeEEEEEEeec
Confidence 8899999999999998776554 34567789999999999999999999999999999999999999999987544
Q ss_pred ccc-----CCCCcCChhhhhhccceEEEEEecCC--------ChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHH
Q 008205 262 SIL-----DTDSQLHSEKMDDIQGVLTLRMYTQS--------SEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLW 328 (574)
Q Consensus 262 ~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~ 328 (574)
..+ +..++.=+++..+.+|-+++....-+ .-..++|+..+..+....+ ........+.++|||+|
T Consensus 273 d~w~ev~~~~~~ctveem~~A~eg~~s~e~~pl~~~~~~tisg~T~~~~l~~~~~~r~~~~--~~~~~~~~~~~ayd~Iw 350 (865)
T KOG1055|consen 273 DNWWEITHPSENCTVEEMTEAAEGHITTEFVMLSPANITTISGMTAQEFLEELTKYRKRHP--EETGGFQEAPLAYDAIW 350 (865)
T ss_pred cchhhccCchhhhhHHHHHHHHhhheeeeeeccccccceeeccchhHHHHHHHHhhhcccc--ccccCcccCchHHHHHH
Confidence 322 11111123556788888777543211 1124556665544332111 11223456789999999
Q ss_pred HHHHHHHHHhhcCCCccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEe
Q 008205 329 LLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINV 408 (574)
Q Consensus 329 ~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~ 408 (574)
++|+|++++........ .++.--....-.-...|+++|.+++|+|++|.|.|.. |+|. ....|-|+
T Consensus 351 a~ala~n~t~e~l~~~~------------~~l~~f~y~~k~i~d~i~eamn~tsF~GvsG~V~F~~-geR~-a~t~ieQ~ 416 (865)
T KOG1055|consen 351 ALALALNKTMEGLGRSH------------VRLEDFNYNNKTIADQIYEAMNSTSFEGVSGHVVFSN-GERM-ALTLIEQF 416 (865)
T ss_pred HHHHHHHHHHhcCCccc------------eeccccchhhhHHHHHHHHHhhcccccccccceEecc-hhhH-HHHHHHHH
Confidence 99999999876532100 0000000000012678999999999999999999987 9986 56688899
Q ss_pred ecCeEEEEEEeeCCC
Q 008205 409 IGTGSRRIGYWSNHS 423 (574)
Q Consensus 409 ~~~~~~~VG~w~~~~ 423 (574)
+++..+++|.|+...
T Consensus 417 qdg~y~k~g~Yds~~ 431 (865)
T KOG1055|consen 417 QDGKYKKIGYYDSTK 431 (865)
T ss_pred hCCceEeeccccccc
Confidence 999999999998764
No 55
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=100.00 E-value=1.6e-31 Score=268.25 Aligned_cols=330 Identities=12% Similarity=0.093 Sum_probs=260.3
Q ss_pred EEEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChH
Q 008205 33 LNIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSV 108 (574)
Q Consensus 33 i~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~ 108 (574)
|+||++.|++ +..|.....++++|+++||++++++ |++|++++.|++++|..+++.+.+++.+ +|.+|+||.+|.
T Consensus 1 IkIG~~~plSG~~a~~G~~~~~G~~lAv~~iNa~GGi~-Gr~ielv~~D~~~~p~~a~~~a~~li~~d~v~~viG~~~S~ 79 (374)
T TIGR03669 1 IKLGVLEDRSGNFALVGTPKWHASQLAIEEINKSGGIL-GRQIELIDPDPQSDNERYQELTRRLLNRDKVDALWAGYSSA 79 (374)
T ss_pred CEEEEEeCCCCCchhccHHHHHHHHHHHHHHHhcCCCC-CceeEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEcCCchH
Confidence 6899999998 5678889999999999999999996 7999999999999999999999999975 999999999999
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHH-cCCeEEEEEEEcCCCCcchHHHHHH
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDY-FGWRNVIALYVDDDHGRNGIAALGD 187 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~-~~W~~v~ii~~~~~~g~~~~~~l~~ 187 (574)
.+.++.+++.+.++|+|....... ....+|+||+.|++..+..++++++.. .+ +++++|+++++||......+++
T Consensus 80 ~~~A~~~~~~~~~~~~i~~~~~~~---~~~~~~~Fr~~~~~~~~~~~~~~~~~~~~g-~~va~l~~d~~~g~~~~~~~~~ 155 (374)
T TIGR03669 80 TREAIRPIIDRNEQLYFYTNQYEG---GVCDEYTFAVGATARQQLGTVVPYMVEEYG-KKIYTIAADYNFGQLSADWVRV 155 (374)
T ss_pred HHHHHHHHHHhcCceEEcCccccc---ccCCCCEEEcCCChHHHHHHHHHHHHHcCC-CeEEEEcCCcHHHHHHHHHHHH
Confidence 999999999999999996421111 123589999999999999999998764 56 6899999999999999999999
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCC
Q 008205 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTD 267 (574)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~ 267 (574)
.+++.|+++.....++ .+..|+..++.+|+..++++|++.....+...++++++++|+..+ ++............
T Consensus 156 ~~~~~G~~vv~~~~~~--~g~~Df~~~l~~i~~~~pD~V~~~~~g~~~~~~~kq~~~~G~~~~---~~~~~~~~~~~~~~ 230 (374)
T TIGR03669 156 IAKENGAEVVGEEFIP--LSVSQFSSTIQNIQKADPDFVMSMLVGANHASFYEQAASANLNLP---MGTSTAMAQGYEHK 230 (374)
T ss_pred HHHHcCCeEEeEEecC--CCcchHHHHHHHHHHcCCCEEEEcCcCCcHHHHHHHHHHcCCCCc---ccchhhhhhhhhhh
Confidence 9999999998877776 467899999999999999999998878888899999999998643 22221111100000
Q ss_pred CcCChhhhhhccceEEEEEecC--CChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 008205 268 SQLHSEKMDDIQGVLTLRMYTQ--SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNIS 345 (574)
Q Consensus 268 ~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~ 345 (574)
........|+++...+.+ ..+..+.|.++|+++++.. ..++.+++..||+++++++|++++.+.
T Consensus 231 ----~~~~~~~~g~~~~~~~~~~~~~~~~~~F~~~y~~~~g~~-----p~~~~~a~~~Yda~~~l~~Ai~~AGs~----- 296 (374)
T TIGR03669 231 ----RFEPPALKDVYAGVNYMEEIDTPENEAFVERFYAKFPDA-----PYINQEAENNYFSVYMYKQAVEEAGTT----- 296 (374)
T ss_pred ----hcCchhhCCcEEeeeccccCCCHHHHHHHHHHHHHcCCC-----CCCChHHHHHHHHHHHHHHHHHHhCCC-----
Confidence 001124556665554433 4577899999999987521 123456788999999999999986211
Q ss_pred ccCCcccccccCCCcccccccccCchHHHHHHHHh-cccccccccEEEcCCCCCCCCcEEEEEeec
Q 008205 346 FSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQ-VNMTGVTGPIKFTSDRDLINPAYEVINVIG 410 (574)
Q Consensus 346 ~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~-~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~ 410 (574)
++..+.++|++ ..|.|..|+++||++++.....+.|.+++.
T Consensus 297 ------------------------d~~av~~aL~~~~~~~~~~G~i~fd~~~~~~~~~~~v~~~~~ 338 (374)
T TIGR03669 297 ------------------------DQDAVRDVLESGVEMDAPEGKVCIDGATHHMSHTMRLARADA 338 (374)
T ss_pred ------------------------CHHHHHHHHHcCCeEECCCccEEEcCCCCeeeeeeEEEEEcC
Confidence 58899999997 579999999999987654434444555543
No 56
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=100.00 E-value=3.9e-32 Score=272.43 Aligned_cols=323 Identities=17% Similarity=0.148 Sum_probs=262.8
Q ss_pred EEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCC-CC--cEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCC
Q 008205 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAIL-GG--TKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQF 106 (574)
Q Consensus 34 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l-~g--~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~ 106 (574)
+||++.|++ +..|.....++++|++++|++++++ +| ++|+++++|+++++..+.+.+.+++.+ +|.+|+|+.+
T Consensus 1 ~IG~l~plsG~~a~~g~~~~~g~~lA~~~iN~~GGi~~~G~~~~iel~~~D~~~~p~~a~~~~~~li~~~~v~~iiG~~~ 80 (347)
T cd06336 1 KIGFSGPLSGPAAAWGLPGLRGVQLAAEEINAAGGIKVGGKKYKVEIVSYDDKYDPAEAAANARRLVQQDGVKFILGPIG 80 (347)
T ss_pred CcceeccCcCcccccChhhHHHHHHHHHHHHhcCCcccCCceeeEEEEEecCCCCHHHHHHHHHHHHhhcCceEEEeCCC
Confidence 589999998 5578889999999999999999886 45 589999999999999999999999987 9999999999
Q ss_pred hHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHH
Q 008205 107 SVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALG 186 (574)
Q Consensus 107 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~ 186 (574)
+..+.. ++++.+.++|+|++.+.++.++...++|+||+.|++..+..++++++++.+|+++++++.|+++|......++
T Consensus 81 s~~~~~-~~~~~~~~ip~i~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~v~il~~d~~~g~~~~~~~~ 159 (347)
T cd06336 81 GGITAA-QQITERNKVLLLTAYSSDLSIDTAGNPLTFRVPPIYNVYGVPFLAYAKKPGGKKVALLGPNDAYGQPWVAAYK 159 (347)
T ss_pred Cchhhh-hhhhhhcCceEEeccCCcccccccCCceEEEecCCchhHHHHHHHHHhhcCCceEEEEccCCchhHHHHHHHH
Confidence 998888 9999999999999988887776556799999999999999999999888999999999999999999999999
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChH-HHHHHHHHHHHCCCCCCCeEEEEeCccccccC
Q 008205 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI-WGLEVLNAAKHLRMMESGYVWIVTDWLSSILD 265 (574)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~-~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~ 265 (574)
+.+++.|+++.....++ ....|+..++.++++.++++|++.+... .+..+++++++.|+... ++..........
T Consensus 160 ~~l~~~G~~vv~~~~~~--~~~~D~s~~i~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~ 234 (347)
T cd06336 160 AAWEAAGGKVVSEEPYD--PGTTDFSPIVTKLLAEKPDVIFLGGPSPAPAALVIKQARELGFKGG---FLSCTGDKYDEL 234 (347)
T ss_pred HHHHHcCCEEeeecccC--CCCcchHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHcCCCcc---EEeccCCCchHH
Confidence 99999999998877776 4578999999999999999999998888 99999999999998643 332221111000
Q ss_pred CCCcCChhhhhhccceEEEEEecC----CChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcC
Q 008205 266 TDSQLHSEKMDDIQGVLTLRMYTQ----SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQG 341 (574)
Q Consensus 266 ~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~ 341 (574)
.. ........|++...+..+ ..+..++|.++|+++++. .++.++..+||+++++++|++++...
T Consensus 235 ~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-------~p~~~~~~~y~~~~~~~~Al~~ag~~- 302 (347)
T cd06336 235 LV----ATGADFMEGVYFQFPDVDDPALAFPRAKAFVEEYKKRYGE-------PPNSEAAVSYDAVYILKAAMEAAGSV- 302 (347)
T ss_pred HH----HhcHHhhCceEEEeecccccccCCHHHHHHHHHHHHHHCC-------CCcHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 00 111245678877766544 467789999999988752 25677889999999999999975211
Q ss_pred CCccccCCcccccccCCCcccccccccCchHHHHHH-HH-------hcccccccccEEEcCCCCCCCCc
Q 008205 342 GNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDN-IL-------QVNMTGVTGPIKFTSDRDLINPA 402 (574)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~-l~-------~~~f~G~tG~v~Fd~~G~r~~~~ 402 (574)
+...+.+. ++ ...|.+..|.+.||++|+...+.
T Consensus 303 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 343 (347)
T cd06336 303 ----------------------------DDTAAVAALAAMLGVGKPAFGYARWWGKELFGVNGALVGPW 343 (347)
T ss_pred ----------------------------CcHHHHHHHhhccCCCcCccccccccccccccCCCccccCc
Confidence 12333333 33 35788899999999999977543
No 57
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=100.00 E-value=4.5e-32 Score=272.54 Aligned_cols=321 Identities=19% Similarity=0.179 Sum_probs=260.8
Q ss_pred EEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChHH
Q 008205 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 109 (574)
+||+++|++ +..|.....++++|+++||+++++ +|++|++++.|+++++..+.+.+++++.+ +|.+|+||.++..
T Consensus 1 ~iG~l~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi-~G~~v~~~~~D~~~~~~~a~~~a~~li~~~~v~aiig~~~s~~ 79 (346)
T cd06330 1 KIGVITFLSGRAAIFGEPARNGAELAVEEINAAGGI-GGRKIELVVRDEAGKPDEAIREARELVENEGVDMLIGLISSGV 79 (346)
T ss_pred CeeEEeecCCchhhhcHHHHHHHHHHHHHHhhcCCc-CCeEEEEEEecCCCCHHHHHHHHHHHHhccCCcEEEcccchHH
Confidence 589999998 456788999999999999999987 58999999999999999999999999997 9999999999999
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCC-CCCCceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEcCCCCcchHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVDDDHGRNGIAALG 186 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~ll~~~--~W~~v~ii~~~~~~g~~~~~~l~ 186 (574)
+.++++++...+||+|++.+.++.+.+ ..++++||+.|++..+..+++++++++ +|+++++++.++++|....+.++
T Consensus 80 ~~~~~~~~~~~~ip~i~~~s~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~g~~~~~~~~ 159 (346)
T cd06330 80 ALAVAPVAEELKVFFIATDPGTPRLTEEPDNPYVFRTRNSTIMDAVAGALYAAKLDKKAKTWATINPDYAYGQDAWADFK 159 (346)
T ss_pred HHHHHHHHHHcCCeEEEcCCCCcccccCCCCCceEEecCChHHHHHHHHHHHHHhCcCccEEEEECCchHHHHHHHHHHH
Confidence 999999999999999998777776665 468999999999999999999999887 49999999999999999999999
Q ss_pred HHHhhcC--cEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCcccccc
Q 008205 187 DKLAEKR--CRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSIL 264 (574)
Q Consensus 187 ~~~~~~g--~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~ 264 (574)
+.+++.| +.+.....++ ....++..++.+|+..++++|++.+.......+++++.+.|+.. +..|+.+......+
T Consensus 160 ~~~~~~g~~~~~v~~~~~~--~~~~d~~~~v~~i~~~~~d~ii~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~ 236 (346)
T cd06330 160 AALKRLRPDVEVVSEQWPK--LGAPDYGSEITALLAAKPDAIFSSLWGGDLVTFVRQANARGLFD-GTTVVLTLTGAPEL 236 (346)
T ss_pred HHHHHhCCCCeecccccCC--CCCcccHHHHHHHHhcCCCEEEEecccccHHHHHHHHHhcCccc-CceEEeeccchhhh
Confidence 9999885 4444433333 35678999999999999999999988889999999999999864 56788766432211
Q ss_pred CCCCcCChhhhhhccceEEEEE--ecC--CChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhc
Q 008205 265 DTDSQLHSEKMDDIQGVLTLRM--YTQ--SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQ 340 (574)
Q Consensus 265 ~~~~~~~~~~~~~~~g~~~~~~--~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~ 340 (574)
. ........|++.... ... ..+..++|.++|+++++ ..++..+...||+++++++|++++...
T Consensus 237 ~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~g-------~~p~~~~~~~y~a~~~l~~a~~~a~~~ 303 (346)
T cd06330 237 A------PLGDEMPEGVIIGGRGPYFIPPDTPENKAFVDAYQEKYG-------DYPTYGAYGAYQAVMALAAAVEKAGAT 303 (346)
T ss_pred h------hhhcccCCceEEeccccCCCCCCChHHHHHHHHHHHHHC-------CCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 0 111234556544332 111 46778999999998875 234566789999999999999986432
Q ss_pred CCCccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCC
Q 008205 341 GGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDR 396 (574)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G 396 (574)
.. ..+ ...+.+.|++++|.|+.|++.|+.+.
T Consensus 304 ~~------------------------~~~-~~~v~~al~~~~~~~~~G~~~f~~~~ 334 (346)
T cd06330 304 DG------------------------GAP-PEQIAAALEGLSFETPGGPITMRAAD 334 (346)
T ss_pred CC------------------------CCc-HHHHHHHHcCCCccCCCCceeeecCC
Confidence 11 011 25799999999999999999998853
No 58
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-31 Score=269.64 Aligned_cols=338 Identities=23% Similarity=0.229 Sum_probs=272.3
Q ss_pred CCeEEEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHh-cCcEEEEcCC
Q 008205 30 PPVLNIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLE-NETVAIIGPQ 105 (574)
Q Consensus 30 ~~~i~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~-~~v~aiiGp~ 105 (574)
.++|+||++.|++ +..|.....++++|+++||+.++++ |.+|++++.|+.+|+..+.+.+.+|+. ++|.+|+|+.
T Consensus 8 a~~IkIGv~~plsG~~A~~G~~~~~ga~lAv~~iNa~Ggi~-G~~velv~~D~~~dp~~a~~~A~~li~~~~V~~vvG~~ 86 (366)
T COG0683 8 ADTIKIGVVLPLSGPAAAYGQQIKNGAELAVEEINAAGGIL-GRKVELVVEDDASDPATAAAVARKLITQDGVDAVVGPT 86 (366)
T ss_pred cCceEEEEEecCCchhhhhChHHHHHHHHHHHHHhhhCCcC-CceEEEEEecCCCChHHHHHHHHHHHhhcCceEEEEec
Confidence 4579999999998 6688999999999999999999986 666999999999999999999999888 5999999999
Q ss_pred ChHHHHHHHHhhccCCccEEecccCCCCcCCCCC-CceEEecCChHHHHHHHHHHHH-HcCCeEEEEEEEcCCCCcchHH
Q 008205 106 FSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQY-PFFVRTTQSDLYQMAAIADIVD-YFGWRNVIALYVDDDHGRNGIA 183 (574)
Q Consensus 106 ~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~-~~~~r~~ps~~~~~~ai~~ll~-~~~W~~v~ii~~~~~~g~~~~~ 183 (574)
+|..+.++.+++.+.++|+|+++++++.+....+ +++||+.|.+..++.++++++. ..+.+++++|++++.||....+
T Consensus 87 ~S~~~~a~~~v~~~~~i~~i~p~st~~~~~~~~~~~~vfr~~~~~~~q~~~~~~~l~~~~~~k~v~ii~~~~~yg~~~~~ 166 (366)
T COG0683 87 TSGVALAASPVAEEAGVPLISPSATAPQLTGRGLKPNVFRTGPTDNQQAAAAADYLVKKGGKKRVAIIGDDYAYGEGLAD 166 (366)
T ss_pred cCcccccchhhHhhcCceEEeecCCCCcccccccccceEEecCChHHHHHHHHHHHHHhcCCcEEEEEeCCCCcchhHHH
Confidence 9999999999999999999999998887666444 4599999999999999999865 5666799999999999999999
Q ss_pred HHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccc
Q 008205 184 ALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSI 263 (574)
Q Consensus 184 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~ 263 (574)
.+++.+++.|.++.....+.+ ...++..++.+++..++++|++.+...+...+++++++.|+... ..++..... ..
T Consensus 167 ~~~~~l~~~G~~~~~~~~~~~--~~~~~~~~v~~i~~~~~d~v~~~~~~~~~~~~~r~~~~~G~~~~-~~~~~~~~~-~~ 242 (366)
T COG0683 167 AFKAALKALGGEVVVEEVYAP--GDTDFSALVAKIKAAGPDAVLVGGYGPDAALFLRQAREQGLKAK-LIGGDGAGT-AE 242 (366)
T ss_pred HHHHHHHhCCCeEEEEEeeCC--CCCChHHHHHHHHhcCCCEEEECCCCccchHHHHHHHHcCCCCc-cccccccCc-hh
Confidence 999999999998554444442 34459999999999999999999999999999999999998653 222222111 11
Q ss_pred cCCCCcCChhhhhhccc-e-EEEEEecC-CChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhc
Q 008205 264 LDTDSQLHSEKMDDIQG-V-LTLRMYTQ-SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQ 340 (574)
Q Consensus 264 ~~~~~~~~~~~~~~~~g-~-~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~ 340 (574)
.. ........+ . +......+ ..+..+.|.++|+++++ ++..++.++...||++++++.|++++..
T Consensus 243 ~~------~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~~~~~~g-----~~~~~~~~~~~~y~a~~~~~~ai~~a~~- 310 (366)
T COG0683 243 FE------EIAGAGGAGAGLLATAYSTPDDSPANKKFVEAYKAKYG-----DPAAPSYFAAAAYDAVKLLAKAIEKAGK- 310 (366)
T ss_pred hh------hhcccCccccEEEEecccccccCcchHHHHHHHHHHhC-----CCCCcccchHHHHHHHHHHHHHHHHHhc-
Confidence 00 000111222 2 22222222 34567779999999885 2234556788999999999999999743
Q ss_pred CCCccccCCcccccccCCCcccccccccCchHHHHHHHHhcc-cccccccEEEcCCCCCCCCcEEEEEeecC
Q 008205 341 GGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVN-MTGVTGPIKFTSDRDLINPAYEVINVIGT 411 (574)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~-f~G~tG~v~Fd~~G~r~~~~~~i~~~~~~ 411 (574)
. . +...+.++|+... +.+.+|.+.||++|++....+.|.+++..
T Consensus 311 ~--------------------------~-d~~~v~~al~~~~~~~~~~G~v~~~~~~~~~~~~~~i~~~~~~ 355 (366)
T COG0683 311 S--------------------------S-DREAVAEALKGGKFFDTAGGPVTFDEKGDRGSKPVYVGQVQKG 355 (366)
T ss_pred C--------------------------C-CHHHHHHHHhhCCCCccCCcceeECCCCCcCCCceEEEEEEec
Confidence 1 1 3778999999987 68999999999999999899988888743
No 59
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=100.00 E-value=2.3e-31 Score=269.00 Aligned_cols=340 Identities=16% Similarity=0.213 Sum_probs=275.1
Q ss_pred CCeEEEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCC
Q 008205 30 PPVLNIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQ 105 (574)
Q Consensus 30 ~~~i~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~ 105 (574)
+++|+||+++|++ +..|.....++++|++++|+.+++. |++|+++++|+++++..+.+.+.+++.+ +|.+|+||.
T Consensus 4 ~~~i~iG~~~~~sG~~a~~g~~~~~g~~~a~~~~Na~gGi~-G~~i~l~~~D~~~~~~~a~~~a~~li~~~~v~avvG~~ 82 (362)
T cd06343 4 DTEIKIGNTMPLSGPASAYGVIGRTGAAYFFMINNDQGGIN-GRKIELIVEDDGYSPPKTVEQTRKLVESDEVFAMVGGL 82 (362)
T ss_pred CceEEEeeccCCCCchhhhcHHHHHHHHHHHHHHHhcCCcC-CeEEEEEEecCCCChHHHHHHHHHHHhhcCeEEEEecC
Confidence 5789999999998 5568889999999999999999884 8999999999999999999999999975 999999999
Q ss_pred ChHHHHHHHHhhccCCccEEecccCCCCcCCC-CCCceEEecCChHHHHHHHHHH-HHHcCCeEEEEEEEcCCCCcchHH
Q 008205 106 FSVIAHLVSHIANEFQVPLLSFAATDPSLSSL-QYPFFVRTTQSDLYQMAAIADI-VDYFGWRNVIALYVDDDHGRNGIA 183 (574)
Q Consensus 106 ~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~-~~~~~~r~~ps~~~~~~ai~~l-l~~~~W~~v~ii~~~~~~g~~~~~ 183 (574)
+|..+.++++++...+||+|++.++.+.+++. .+|++||+.|++..+..+++++ +++++|+++++||+++.||....+
T Consensus 83 ~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g~~~~~ 162 (362)
T cd06343 83 GTPTNLAVQKYLNEKKVPQLFPASGASKWNDPKPFPWTFGWQPSYQDEARIYAKYLVEEKPNAKIAVLYQNDDFGKDYLK 162 (362)
T ss_pred CcHHHHHhHHHHHhcCCceEecccccHhhhCCCCCCceEecCCChHHHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHH
Confidence 99999999999999999999987666666663 6899999999999999999996 567899999999999999999999
Q ss_pred HHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccc
Q 008205 184 ALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSI 263 (574)
Q Consensus 184 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~ 263 (574)
.+++.+++.|+++.....++ .+..|+..++.+++..++++|++.+....+..+++++++.|+... ++........
T Consensus 163 ~~~~~~~~~G~~vv~~~~~~--~~~~d~~~~v~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~ 237 (362)
T cd06343 163 GLKDGLGDAGLEIVAETSYE--VTEPDFDSQVAKLKAAGADVVVLATTPKFAAQAIRKAAELGWKPT---FLLSSVSASV 237 (362)
T ss_pred HHHHHHHHcCCeEEEEeeec--CCCccHHHHHHHHHhcCCCEEEEEcCcHHHHHHHHHHHHcCCCce---EEEEeccccc
Confidence 99999999999998877776 456789999999999999999999999999999999999998643 5555433211
Q ss_pred cC-CCCcCChhhhhhccceEEEEEec-------CCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHH
Q 008205 264 LD-TDSQLHSEKMDDIQGVLTLRMYT-------QSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIG 335 (574)
Q Consensus 264 ~~-~~~~~~~~~~~~~~g~~~~~~~~-------~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~ 335 (574)
.. .. ........|+++...+. ...+..++|.+.|+++++. ...++..+...||++.++++|++
T Consensus 238 ~~~~~----~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~f~~~~~~~~~~-----~~~~~~~~~~~y~a~~~~~~a~~ 308 (362)
T cd06343 238 ASVLK----PAGLEAAEGVIAAAYLKDPTDPAWADDPGVKEFIAFYKKYFPE-----GDPPDTYAVYGYAAAETLVKVLK 308 (362)
T ss_pred HHHHH----HhhhHhhCceEEEEEecCCCccccccCHHHHHHHHHHHHhcCC-----CCCCchhhhHHHHHHHHHHHHHH
Confidence 10 10 11123567777665442 2356788899999887742 11356778889999999999999
Q ss_pred HHhhcCCCccccCCcccccccCCCcccccccccCchHHHHHHHHhccc---ccc-cccEEEcCCCCCCCCcEEEEEeecC
Q 008205 336 AFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNM---TGV-TGPIKFTSDRDLINPAYEVINVIGT 411 (574)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f---~G~-tG~v~Fd~~G~r~~~~~~i~~~~~~ 411 (574)
++.. . . ++..+.++|+++++ .+. .|++.|+.+.++....+.|.+++++
T Consensus 309 ~ag~---~------------------------~-~~~~v~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 360 (362)
T cd06343 309 QAGD---D------------------------L-TRENIMKQAESLKDVLPDLLPGIRINTSPDDHLPIEQMQLMRFEGG 360 (362)
T ss_pred HhCC---C------------------------C-CHHHHHHHHHhCCCCCccccCccceecCccccccceeEEEEEEecC
Confidence 8521 1 1 47899999999987 333 3589998765555556667776654
Q ss_pred e
Q 008205 412 G 412 (574)
Q Consensus 412 ~ 412 (574)
+
T Consensus 361 ~ 361 (362)
T cd06343 361 R 361 (362)
T ss_pred c
Confidence 3
No 60
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=100.00 E-value=2.1e-31 Score=266.93 Aligned_cols=328 Identities=20% Similarity=0.249 Sum_probs=264.8
Q ss_pred EEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChHH
Q 008205 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 109 (574)
+||++.|++ +..|.....++++|++++|+++++ +|++|+++++|+++++..+.+.+.+++.+ +|.+|+||.+|..
T Consensus 1 ~IG~~~plsG~~a~~G~~~~~g~~~a~~~iN~~ggi-~G~~i~l~~~D~~~~~~~a~~~a~~li~~~~V~~i~G~~~s~~ 79 (340)
T cd06349 1 LIGVAGPLTGDNAQYGTQWKRAFDLALDEINAAGGV-GGRPLNIVFEDSKSDPRQAVTIAQKFVADPRIVAVLGDFSSGV 79 (340)
T ss_pred CeeEEecCCCcchhcCccHHHHHHHHHHHHHhhCCc-CCeEEEEEEeCCCCChHHHHHHHHHHhccCCeEEEECCCccHh
Confidence 599999998 567889999999999999999998 68999999999999999999999999986 7999999999999
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH-HHcCCeEEEEEEEcCCCCcchHHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV-DYFGWRNVIALYVDDDHGRNGIAALGDK 188 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll-~~~~W~~v~ii~~~~~~g~~~~~~l~~~ 188 (574)
+.++++++...+||+|++.++.+.+++ ..+|+||+.|++..+..++++++ ++++|++++++|.++++|....+.+++.
T Consensus 80 ~~a~~~~~~~~~vp~i~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~ii~~~~~~g~~~~~~~~~~ 158 (340)
T cd06349 80 SMAASPIYQRAGLVQLSPTNSHPDFTK-GGDFIFRNSTSQAIEAPLLADYAVKDLGFKKVAILSVNTDWGRTSADIFVKA 158 (340)
T ss_pred HHHhHHHHHhCCCeEEecCCCCCcccc-CCCeEEEccCCcHHHHHHHHHHHHHHcCCcEEEEEecCChHhHHHHHHHHHH
Confidence 999999999999999998776666654 45899999999999999999985 6789999999999999999999999999
Q ss_pred HhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCC
Q 008205 189 LAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDS 268 (574)
Q Consensus 189 ~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~ 268 (574)
+++.|+++.....++ ....|+..++.+++.+++++|++.+....+..+++++.+.|+..+ ++........ ...
T Consensus 159 ~~~~g~~v~~~~~~~--~~~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~-~~~- 231 (340)
T cd06349 159 AEKLGGQVVAHEEYV--PGEKDFRPTITRLRDANPDAIILISYYNDGAPIARQARAVGLDIP---VVASSSVYSP-KFI- 231 (340)
T ss_pred HHHcCCEEEEEEEeC--CCCCcHHHHHHHHHhcCCCEEEEccccchHHHHHHHHHHcCCCCc---EEccCCcCCH-HHH-
Confidence 999999999876666 346789999999999999999999999999999999999998643 5544322111 000
Q ss_pred cCChhhhhhccceEEEEEecC--CChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 008205 269 QLHSEKMDDIQGVLTLRMYTQ--SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISF 346 (574)
Q Consensus 269 ~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~ 346 (574)
........|++....+.+ ..+..+.|.++|+++++ ..++.++..+||++.++++|++++...
T Consensus 232 ---~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~-------~~p~~~~~~~y~~~~~~~~a~~~ag~~------ 295 (340)
T cd06349 232 ---ELGGDAVEGVYTPTAFFPGDPRPEVQSFVSAYEAKYG-------AQPDAFAAQAYDAVGILAAAVRRAGTD------ 295 (340)
T ss_pred ---HHhHHHhCCcEEecccCCCCCCHHHHHHHHHHHHHHC-------CCcchhhhhHHHHHHHHHHHHHHhCCC------
Confidence 111235678777665544 35678999999987764 224667889999999999999975210
Q ss_pred cCCcccccccCCCcccccccccCchHHHHHHH--HhcccccccccEEEcCC-CCCCCCcEEEEEeecC
Q 008205 347 SEDSKLSELSRGDMRFSSVSIFNGGKMLLDNI--LQVNMTGVTGPIKFTSD-RDLINPAYEVINVIGT 411 (574)
Q Consensus 347 ~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l--~~~~f~G~tG~v~Fd~~-G~r~~~~~~i~~~~~~ 411 (574)
.......+ .+..+.|.+|++.|+.+ +++. ..+.++.++++
T Consensus 296 ------------------------~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~-~~~~~~~~~~g 338 (340)
T cd06349 296 ------------------------RRAARDGFAKAEDVYSGVTGSTKFDPNTRRVI-KRFVPLVVRNG 338 (340)
T ss_pred ------------------------CHHHHHHHHHhccCcccceEeEEECCCCCCcc-CceEEEEEeCC
Confidence 11223333 45567899999999987 5544 47777776654
No 61
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=100.00 E-value=2.6e-31 Score=265.44 Aligned_cols=318 Identities=16% Similarity=0.144 Sum_probs=262.1
Q ss_pred EEEEEeccCC----ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChH
Q 008205 34 NIGAVFALNS----TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSV 108 (574)
Q Consensus 34 ~IG~l~~~~~----~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~ 108 (574)
+||+++|++. ..|.....++++|++++| +++ .|++|+++++|++++|..+.+.+.+++.+ +|.+|+||.+|.
T Consensus 1 ~IG~l~plsG~~~a~~g~~~~~g~~la~~~iN--ggi-~G~~v~l~~~D~~~~p~~a~~~~~~l~~~~~V~aviG~~~s~ 77 (334)
T cd06327 1 KIGVLTDMSGVYADAEGKGSVEAAELAVEDFG--GGV-LGRPIELVVADHQNKADVAAAKAREWIDRDGVDMIVGGPNSA 77 (334)
T ss_pred CcccccCCCCcCccccCHHHHHHHHHHHHHhc--CCc-cCeEEEEEEecCCCCchHHHHHHHHHHhhcCceEEECCccHH
Confidence 5899999983 447788999999999999 777 58999999999999999999999999987 999999999999
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCC-CCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHH
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSL-QYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGD 187 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~-~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~ 187 (574)
.+.++++++.+.+||+|++.++++.++.. .+||+||+.|++..++.++++++...+++++++++.++.+|......+++
T Consensus 78 ~~~a~~~~~~~~~vp~i~~~s~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~g~~~~~~~~~ 157 (334)
T cd06327 78 VALAVQEVAREKKKIYIVTGAGSDDLTGKDCSPYTFHWAYDTYMLANGTAPALVKAGGKKWFFLTADYAFGHSLERDARK 157 (334)
T ss_pred HHHHHHHHHHHhCceEEecCCCccccccCCCCCceEEccCChHHHHHHHHHHHHHhcCCeEEEEecchHHhHHHHHHHHH
Confidence 99999999999999999988877777764 47999999999999999999988777899999999999999999999999
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCC
Q 008205 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTD 267 (574)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~ 267 (574)
.+++.|+++.....++ ....|+..++.+++..++++|++.+....+..+++++++.|+.. ...++....+... ..
T Consensus 158 ~~~~~G~~vv~~~~~~--~~~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~--~~ 232 (334)
T cd06327 158 VVKANGGKVVGSVRHP--LGTSDFSSYLLQAQASGADVLVLANAGADTVNAIKQAAEFGLTK-GQKLAGLLLFLTD--VH 232 (334)
T ss_pred HHHhcCCEEcCcccCC--CCCccHHHHHHHHHhCCCCEEEEeccchhHHHHHHHHHHhCCcc-CCcEEEecccHHH--HH
Confidence 9999999998777666 45678999999999999999999999999999999999999862 3333332221111 00
Q ss_pred CcCChhhhhhccceEEEEEecC--CChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 008205 268 SQLHSEKMDDIQGVLTLRMYTQ--SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNIS 345 (574)
Q Consensus 268 ~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~ 345 (574)
.......+|+++...+.+ ..+..++|.+.|+++++ ..++.++...||+++++++|++++...
T Consensus 233 ----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g-------~~p~~~~~~~Y~~~~~~~~A~~~ag~~----- 296 (334)
T cd06327 233 ----SLGLDAAQGLYLTTAWYWDLPNDETRAFVKRFQAKYG-------KMPSMVQAGAYSAVLHYLKAVEAAGTD----- 296 (334)
T ss_pred ----hhchhhhcCeEEeeeccccCCCHHHHHHHHHHHHHHC-------cCCCcHHHHHHHHHHHHHHHHHHHCCC-----
Confidence 111235678777665543 36778999999998875 235667889999999999999986321
Q ss_pred ccCCcccccccCCCcccccccccCchHHHHHHHHhcc-cccccccEEEcC-CCCCC
Q 008205 346 FSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVN-MTGVTGPIKFTS-DRDLI 399 (574)
Q Consensus 346 ~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~-f~G~tG~v~Fd~-~G~r~ 399 (574)
++..+.+.|+++. +++..|+++|+. +|+..
T Consensus 297 ------------------------~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~ 328 (334)
T cd06327 297 ------------------------DADKVVAKMKETPIYDLFAGNGYIRACDHQMV 328 (334)
T ss_pred ------------------------ChHHHHHhccccceeccCCCCceeeccccchh
Confidence 3667999999985 578899999987 66644
No 62
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=100.00 E-value=7.7e-31 Score=261.81 Aligned_cols=324 Identities=15% Similarity=0.186 Sum_probs=258.6
Q ss_pred EEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChHH
Q 008205 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 109 (574)
+||+++|++ +..|.....++++|++++| +++ .|++|+++++|+++++..+.+.+.+++.+ +|.+|+||.+|..
T Consensus 1 ~IG~~~plsG~~a~~g~~~~~g~~lAv~~in--ggi-~G~~i~l~~~D~~~~p~~a~~~~~~lv~~~~v~~viG~~~s~~ 77 (333)
T cd06359 1 KIGFITTLSGPAAALGQDMRDGFQLALKQLG--GKL-GGLPVEVVVEDDGLKPDVAKQAAERLIKRDKVDFVTGVVFSNV 77 (333)
T ss_pred CeEEEEecccchhhhhHHHHHHHHHHHHHhC--Ccc-CCEEEEEEecCCCCChHHHHHHHHHHHhhcCCcEEEccCCcHH
Confidence 589999998 4467788999999999998 555 58999999999999999999999999977 9999999999999
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDK 188 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~ 188 (574)
+.++++++...+||+|++.+..+.+.+ ..+||+||+.|++..+..++++++...+|+++++++.++++|....+.+++.
T Consensus 78 ~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~g~~~vail~~~~~~g~~~~~~~~~~ 157 (333)
T cd06359 78 LLAVVPPVLESGTFYISTNAGPSQLAGKQCSPYFFSTSWQNDQVHEAMGKYAQDKGYKRVFLIAPNYQAGKDALAGFKRT 157 (333)
T ss_pred HHHHHHHHHHcCCeEEecCCCccccccccCCCcEEEeeCChHhhHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHH
Confidence 999999999999999998665555554 3479999999999999999999999999999999999999998888888777
Q ss_pred HhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCC
Q 008205 189 LAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDS 268 (574)
Q Consensus 189 ~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~ 268 (574)
+. ..+.....++ ....|+..++.++++.++++|++......+..+++++++.|+.. ...++.+...... +..
T Consensus 158 ~~---~~v~~~~~~~--~~~~d~~~~i~~l~~~~pd~v~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~-~~~- 229 (333)
T cd06359 158 FK---GEVVGEVYTK--LGQLDFSAELAQIRAAKPDAVFVFLPGGMGVNFVKQYRQAGLKK-DIPLYSPGFSDEE-DTL- 229 (333)
T ss_pred hC---ceeeeeecCC--CCCcchHHHHHHHHhCCCCEEEEEccCccHHHHHHHHHHcCccc-CCeeeccCcccCH-HHH-
Confidence 64 3444444444 45678999999999999999999888888899999999999853 3345544332211 010
Q ss_pred cCChhhhhhccceEEEEEecC--CChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 008205 269 QLHSEKMDDIQGVLTLRMYTQ--SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISF 346 (574)
Q Consensus 269 ~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~ 346 (574)
....+...|+++...+.+ .++..++|.+.|+++++ ..++.++...||+++++++|++++....
T Consensus 230 ---~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~-------~~~~~~~~~~yda~~~~~~A~~~ag~~~----- 294 (333)
T cd06359 230 ---PAVGDAALGLYNTAQWAPDLDNPANKKFVADFEKKYG-------RLPTLYAAQAYDAAQLLDSAVRKVGGNL----- 294 (333)
T ss_pred ---HhcchhhcCeeeccccCCCCCCHHHHHHHHHHHHHhC-------CCCcHHHHHHHHHHHHHHHHHHHhcCCC-----
Confidence 112245678777666554 46778999999998874 2356778899999999999999852110
Q ss_pred cCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEE
Q 008205 347 SEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVI 406 (574)
Q Consensus 347 ~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~ 406 (574)
.++..+.+.|+++.|+|++|++.|+.+|+.. ..+.++
T Consensus 295 ----------------------~~~~~v~~al~~~~~~~~~G~~~~~~~~~~~-~~~~~~ 331 (333)
T cd06359 295 ----------------------SDKDALRAALRAADFKSVRGAFRFGTNHFPI-QDFYLR 331 (333)
T ss_pred ----------------------CCHHHHHHHHhcCccccCccceEECCCCCcc-eeEEEE
Confidence 0378899999999999999999999987643 334443
No 63
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=100.00 E-value=1.5e-30 Score=261.87 Aligned_cols=319 Identities=14% Similarity=0.088 Sum_probs=254.5
Q ss_pred EEEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChH
Q 008205 33 LNIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSV 108 (574)
Q Consensus 33 i~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~ 108 (574)
|+||++.|++ +..|.....++++|+++||++++++ |++|++++.|++++|..+++.+.+|+.+ +|.+|+||.+|.
T Consensus 1 I~IG~l~plsG~~a~~g~~~~~g~~lav~~iN~~GGi~-G~~i~l~~~Dd~~~p~~a~~~a~~Lv~~~~V~~iiG~~~S~ 79 (359)
T TIGR03407 1 IKVGILHSLSGTMAISETTLKDAELMAIEEINASGGVL-GKKIEPVVEDGASDWPTFAEKARKLITQDKVAAVFGCWTSA 79 (359)
T ss_pred CeEEEEeCCCCchhhcchhHHHHHHHHHHHHHhcCCCC-CcEEEEEEeCCCCCHHHHHHHHHHHHhhCCCcEEEcCCcHH
Confidence 6899999998 5567888999999999999999996 8999999999999999999999999975 899999999999
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHH-cCCeEEEEEEEcCCCCcchHHHHHH
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDY-FGWRNVIALYVDDDHGRNGIAALGD 187 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~-~~W~~v~ii~~~~~~g~~~~~~l~~ 187 (574)
.+.++.+++...++|++.+.... .....|++||+.|++..+..++++++.. .|.+++++++.|++||....+.+++
T Consensus 80 ~~~a~~~~~~~~~~~~i~~~~~~---~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~g~k~v~~l~~d~~~g~~~~~~~~~ 156 (359)
T TIGR03407 80 SRKAVLPVFEENNGLLFYPVQYE---GEECSPNIFYTGAAPNQQIIPAVDYLLSKKGAKRFFLLGSDYVFPRTANKIIKA 156 (359)
T ss_pred HHHHHHHHHhccCCceEeCCccc---CcccCCCEEEcCCChHHHHHHHHHHHHhccCCceEEEecCccHHHHHHHHHHHH
Confidence 99999999999999999753211 1235689999999999999999998765 5999999999999999988889999
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCC
Q 008205 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTD 267 (574)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~ 267 (574)
.+++.|+++.....++ .+..|+..++.+|+..+++.|++.........+++++++.|+......++........+.
T Consensus 157 ~~~~~G~~vv~~~~~~--~~~~D~s~~v~~l~~~~pDav~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-- 232 (359)
T TIGR03407 157 YLKSLGGTVVGEDYTP--LGHTDFQTIINKIKAFKPDVVFNTLNGDSNVAFFKQLKNAGITAKDVPVVSFSVAEEEIR-- 232 (359)
T ss_pred HHHHcCCEEEeeEEec--CChHhHHHHHHHHHHhCCCEEEEeccCCCHHHHHHHHHHcCCCccCCcEEEeecCHHHHh--
Confidence 9999999998877666 467899999999999999999887777778889999999998644333444332111110
Q ss_pred CcCChhhhhhccceEEEEEe--cCCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 008205 268 SQLHSEKMDDIQGVLTLRMY--TQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNIS 345 (574)
Q Consensus 268 ~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~ 345 (574)
.-......|+.+...+ ....+..+.|.++|+++++. ...+...++..||++.++++|++++...
T Consensus 233 ----~~g~~~~~G~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-----~~~~~~~~~~~y~a~~~~~~A~~~ag~~----- 298 (359)
T TIGR03407 233 ----GIGPENLVGHLAAWNYFQSVDTPANKKFVKAFKAKYGD-----DRVTNDPMEAAYLGVYLWKAAVEKAGSF----- 298 (359)
T ss_pred ----hcChHhhCCeEEeccchhcCCCHHHHHHHHHHHHHcCC-----CCCCCcHHHHHHHHHHHHHHHHHHhCCC-----
Confidence 0011345676543222 23457788999999887642 1122334567899999999999986211
Q ss_pred ccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCC
Q 008205 346 FSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRD 397 (574)
Q Consensus 346 ~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~ 397 (574)
++..+.+.|++++|+++.|+++|+++++
T Consensus 299 ------------------------~~~~i~~al~~~~~~~~~G~i~f~~~~~ 326 (359)
T TIGR03407 299 ------------------------DVDAVRDAAIGIEFDAPEGKVKVDGKNH 326 (359)
T ss_pred ------------------------CHHHHHHHhcCCcccCCCccEEEeCCCC
Confidence 4889999999999999999999997443
No 64
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=100.00 E-value=6.8e-31 Score=263.96 Aligned_cols=332 Identities=22% Similarity=0.287 Sum_probs=270.3
Q ss_pred eEEEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHh-cCcEEEEcCCCh
Q 008205 32 VLNIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLE-NETVAIIGPQFS 107 (574)
Q Consensus 32 ~i~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~-~~v~aiiGp~~s 107 (574)
+|+||++.|++ +..|.....++++|++++|+.+++. |++|+++++|+.+++..+.+.+.++++ ++|.+|+||.++
T Consensus 1 ~i~IG~~~~~sG~~a~~g~~~~~g~~~a~~~~N~~ggi~-G~~i~l~~~D~~~~~~~a~~~~~~l~~~~~v~~vvg~~~s 79 (343)
T PF13458_consen 1 PIKIGVLVPLSGPFAPYGQDFLRGAELAVDEINAAGGIN-GRKIELVVYDDGGDPAQAVQAARKLIDDDGVDAVVGPLSS 79 (343)
T ss_dssp SEEEEEEE-SSSTTHHHHHHHHHHHHHHHHHHHHTTEET-TEEEEEEEEE-TT-HHHHHHHHHHHHHTSTESEEEESSSH
T ss_pred CEEEEEEECCCChhhhhhHHHHHHHHHHHHHHHHhCCcC-CccceeeeccCCCChHHHHHHHHHhhhhcCcEEEEecCCc
Confidence 58999999998 3457788999999999999998885 899999999999999999999999998 799999999999
Q ss_pred HHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH-HHcCCeEEEEEEEcCCCCcchHHHHH
Q 008205 108 VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV-DYFGWRNVIALYVDDDHGRNGIAALG 186 (574)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll-~~~~W~~v~ii~~~~~~g~~~~~~l~ 186 (574)
..+.++++++...++|+|++.+.++ ...++++||+.|++..+..++++++ ++++.+++++|+.++++|....+.++
T Consensus 80 ~~~~~~~~~~~~~~ip~i~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~~~v~iv~~~~~~g~~~~~~~~ 156 (343)
T PF13458_consen 80 AQAEAVAPIAEEAGIPYISPSASSP---SPDSPNVFRLSPSDSQQAAALAEYLAKKLGAKKVAIVYPDDPYGRSLAEAFR 156 (343)
T ss_dssp HHHHHHHHHHHHHT-EEEESSGGGG---TTTHTTEEESS--HHHHHHHHHHHHHHTTTTSEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcEEEEeeccCC---CCCCCcEEEEeccccHHHHHHHHHHHHHcCCcEEEEEecCchhhhHHHHHHH
Confidence 9999999999999999999654332 2456899999999999999999975 56899999999999999999999999
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCC
Q 008205 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDT 266 (574)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~ 266 (574)
+.+++.|+++.....++ .+..|+..+++++++.++++|++.+.+..+..+++++.+.|+..+.+....+..+...+
T Consensus 157 ~~~~~~G~~vv~~~~~~--~~~~d~~~~~~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-- 232 (343)
T PF13458_consen 157 KALEAAGGKVVGEIRYP--PGDTDFSALVQQLKSAGPDVVVLAGDPADAAAFLRQLRQLGLKPPRIPLFGTSLDDASL-- 232 (343)
T ss_dssp HHHHHTTCEEEEEEEE---TTSSHHHHHHHHHHHTTTSEEEEESTHHHHHHHHHHHHHTTGCSCTEEEEEGGGSSHHH--
T ss_pred HHHhhcCceeccceecc--cccccchHHHHHHhhcCCCEEEEeccchhHHHHHHHHHhhccccccceeeccccCcHHH--
Confidence 99999999987776676 45688999999999999999999999999999999999999764434444332222111
Q ss_pred CCcCChhh-hhhccceEEEEEecC--CChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCC
Q 008205 267 DSQLHSEK-MDDIQGVLTLRMYTQ--SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGN 343 (574)
Q Consensus 267 ~~~~~~~~-~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~ 343 (574)
... .....|++....+.+ ..+..++|.++|++.++. ...++..+...||++.+++.|++++..
T Consensus 233 -----~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-----~~~~~~~~~~~yda~~~~~~al~~~g~---- 298 (343)
T PF13458_consen 233 -----QQLGGDALEGVYIVSPWFPDPDSPAVKQFQERYRAAYGE-----EPPPSLYAAQGYDAARLLAQALERAGS---- 298 (343)
T ss_dssp -----HHHHGGGGTTEEEEESGGGTGGSHHHHHHHHHHHHHHSS-----TGGTCHHHHHHHHHHHHHHHHHHHHTS----
T ss_pred -----HHhhhhhccCceeecccCCCCCCHHHHHHHHHHHHHcCC-----CCCCchhHHHHHHHHHHHHHHHHHhCC----
Confidence 112 236778888777655 467789999999998852 113677899999999999999998621
Q ss_pred ccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeec
Q 008205 344 ISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIG 410 (574)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~ 410 (574)
. ++..+.++|++++|+|+.|++.|+..+......+.|++++.
T Consensus 299 ------------------------~-~~~~v~~al~~~~~~g~~g~~~~~~~~~~~~~~~~i~~v~~ 340 (343)
T PF13458_consen 299 ------------------------L-DREAVREALESLKYDGLFGPISFDPPDHQANKPVYIVQVKS 340 (343)
T ss_dssp ------------------------H-HHHHHHHHHHTSEEEETTEEEEEETTTSBEEEEEEEEEEET
T ss_pred ------------------------C-CHHHHHHHHHhCCCcccccceEEeCCCCccccCeEEEEEec
Confidence 0 58999999999999999999999876555677788888873
No 65
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=100.00 E-value=2.7e-30 Score=258.74 Aligned_cols=324 Identities=16% Similarity=0.231 Sum_probs=266.9
Q ss_pred EEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHh-cCcEEEEcCCChHH
Q 008205 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLE-NETVAIIGPQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~-~~v~aiiGp~~s~~ 109 (574)
+||+++|++ +..|.....++++|++++| +++ .|++|++++.|+++++..+.+.+.+++. .+|.+||||.++..
T Consensus 1 ~IG~l~p~sG~~a~~g~~~~~g~~~a~~~~~--~~i-~G~~i~l~~~D~~~~~~~~~~~~~~lv~~~~v~~iig~~~s~~ 77 (336)
T cd06360 1 KVGLLLPYSGTYAALGEDITRGFELALQEAG--GKL-GGREVEFVVEDDEAKPDVAVEKARKLIEQDKVDVVVGPVHSGE 77 (336)
T ss_pred CeEEEEecccchHhhcHhHHHHHHHHHHHhC--CCc-CCEEEEEEEcCCCCChHHHHHHHHHHHHHhCCcEEEccCccHh
Confidence 589999998 3456788999999999986 333 6899999999999999999999999987 49999999999888
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCC-CCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSL-QYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDK 188 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~-~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~ 188 (574)
+.++.+++...+||+|++.++++.+++. .+|++||+.|++..+...+++++...+|+++++++.++.++....+.+++.
T Consensus 78 ~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~v~~l~~~~~~g~~~~~~~~~~ 157 (336)
T cd06360 78 ALAMVKVLREPGTPLINPNAGADDLTGRLCAPNFFRTSFSNAQWAAPMGKYAADDGYKKVVTVAWDYAFGYEVVEGFKEA 157 (336)
T ss_pred HHHHHHHHHhcCceEEecCCCCccccccCCCCcEEEEeCchHHHHHHHHHHHHHcCCCeEEEEeccchhhHHHHHHHHHH
Confidence 8888999999999999988777777664 479999999999999999999999899999999999989999999999999
Q ss_pred HhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCC
Q 008205 189 LAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDS 268 (574)
Q Consensus 189 ~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~ 268 (574)
+++.|+++.....++ ....|+..++.++++.++++|++......+..+++++.+.|+.. +..|+.+++.......
T Consensus 158 ~~~~G~~v~~~~~~~--~~~~d~~~~v~~~~~~~pd~v~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~-- 232 (336)
T cd06360 158 FTEAGGKIVKELWVP--FGTSDFASYLAQIPDDVPDAVFVFFAGGDAIKFVKQYDAAGLKA-KIPLIGSGFLTDGTTL-- 232 (336)
T ss_pred HHHcCCEEEEEEecC--CCCcchHHHHHHHHhcCCCEEEEecccccHHHHHHHHHHcCCcc-CCeEEecccccCHHHH--
Confidence 999999988766665 45678999999999999999999888888999999999999843 3346655443221100
Q ss_pred cCChhhhhhccceEEEEEecC--CChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 008205 269 QLHSEKMDDIQGVLTLRMYTQ--SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISF 346 (574)
Q Consensus 269 ~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~ 346 (574)
........|++...++.+ ..+..+.|.+.|+++++ ..++.++...||+++++++|++++....
T Consensus 233 ---~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~y~~~~~-------~~~~~~~~~~yda~~~~~~A~~~a~~~~----- 297 (336)
T cd06360 233 ---GAAGEAAEGVITALHYADTLDNPANQAFVKAYRAAYP-------DTPSVYAVQGYDAGQALILALEAVGGDL----- 297 (336)
T ss_pred ---HhhHhhhcCceeccccCCCCCCHHHHHHHHHHHHHhC-------CCccHHHHHHHHHHHHHHHHHHHhCCCC-----
Confidence 122346778777665543 46778999999998875 2456788999999999999999863210
Q ss_pred cCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCc
Q 008205 347 SEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPA 402 (574)
Q Consensus 347 ~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~ 402 (574)
.++..+.+.|++++|.|..|+++|+++|++....
T Consensus 298 ----------------------~~~~~v~~al~~~~~~~~~g~~~f~~~~~~~~~~ 331 (336)
T cd06360 298 ----------------------SDGQALIAAMAAAKIDSPRGPFTLDKAHNPIQDN 331 (336)
T ss_pred ----------------------CCHHHHHHHHhcCCccCCCcceEECCCCCcccce
Confidence 0367899999999999999999999999876553
No 66
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Probab=100.00 E-value=8.4e-30 Score=256.44 Aligned_cols=339 Identities=14% Similarity=0.102 Sum_probs=264.2
Q ss_pred EEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHh-cCcEEEEcCCChHH
Q 008205 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLE-NETVAIIGPQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~-~~v~aiiGp~~s~~ 109 (574)
+||+++|++ +..|.....++++|+++||++++++ |++|+++++|++++|..+...+.++++ ++|.+|+|+.+|..
T Consensus 1 kIG~~~plSG~~a~~g~~~~~g~~la~~~iN~~GGi~-G~~ielv~~D~~~~p~~a~~~a~~li~~~~V~aiiG~~~s~~ 79 (360)
T cd06357 1 RVGVLFSRTGVTAAIERSQRNGALLAIEEINAAGGVL-GRELEPVEYDPGGDPDAYRALAERLLREDGVRVIFGCYTSSS 79 (360)
T ss_pred CeEEEEcCCCCchhccHHHHHHHHHHHHHHhhcCCCC-CeEEEEEEECCCCCHHHHHHHHHHHHhhCCCcEEEeCccHHH
Confidence 599999998 6678899999999999999999985 799999999999999999999999997 59999999999999
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKL 189 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~ 189 (574)
+.++.+++...++|++++.+... . ...+++|++.++...+..++++++...+-+++++|+.|+++|....+.+++.+
T Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~-~--~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~g~~~~~~~~~~~ 156 (360)
T cd06357 80 RKAVLPVVERHDALLWYPTLYEG-F--EYSPNVIYTGAAPNQNSVPLADYLLRHYGKRVFLVGSNYIYPYESNRIMRDLL 156 (360)
T ss_pred HHHHHHHHHhcCceEEeCCCccC-C--cccCCEEEeCCCcHHHHHHHHHHHHhcCCcEEEEECCCCcchHHHHHHHHHHH
Confidence 99999999999999998654221 1 12367888888877777889888765555899999999999999999999999
Q ss_pred hhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCc
Q 008205 190 AEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQ 269 (574)
Q Consensus 190 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~ 269 (574)
++.|+++.....++...+..|+..++.++++.++++|++.+....+..++++++++|+.... ..+.+...... ...
T Consensus 157 ~~~G~~vv~~~~~~~~~~~~d~s~~v~~l~~~~pd~V~~~~~~~~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~-~~~-- 232 (360)
T cd06357 157 EQRGGEVLGERYLPLGASDEDFARIVEEIREAQPDFIFSTLVGQSSYAFYRAYAAAGFDPAR-MPIASLTTSEA-EVA-- 232 (360)
T ss_pred HHcCCEEEEEEEecCCCchhhHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHcCCCccC-ceeEEeeccHH-HHh--
Confidence 99999988765555434578999999999999999999999999999999999999986442 22333211110 000
Q ss_pred CChhhhhhccceEEEEEecC--CChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 008205 270 LHSEKMDDIQGVLTLRMYTQ--SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFS 347 (574)
Q Consensus 270 ~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~ 347 (574)
.......+|+++...+.+ ..+..+.|.+.|+++++. ...++.++...||+++++++|++++...
T Consensus 233 --~~~g~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~g~-----~~~~~~~~~~~yda~~~l~~Al~~ag~~------- 298 (360)
T cd06357 233 --AMGAEAAAGHITAAPYFSSIDTPANRAFVARYRARFGE-----DAPVSACAEAAYFQVHLFARALQRAGSD------- 298 (360)
T ss_pred --hcchHhhCCcEEecccccccCChhHHHHHHHHHHHcCC-----CCCCCcHHHHHHHHHHHHHHHHHHcCCC-------
Confidence 111245778777655432 457789999999988752 1124567889999999999999975210
Q ss_pred CCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEe-ecCeEEEE
Q 008205 348 EDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINV-IGTGSRRI 416 (574)
Q Consensus 348 ~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~-~~~~~~~V 416 (574)
++..+.++|++++|+|..|.+.|+..++.......+.++ +++++..+
T Consensus 299 ----------------------~~~~v~~aL~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~G~~~~~ 346 (360)
T cd06357 299 ----------------------DPEDVLAALLGFSFDAPQGPVRIDPDNNHTYLWPRIARVNADGQFDIV 346 (360)
T ss_pred ----------------------CHHHHHHHhccCcccCCCcceEEeCCCCeeeeeeEEEEEcCCCCEEEE
Confidence 478899999999999999999999866533334445555 33334333
No 67
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=100.00 E-value=4.7e-30 Score=257.43 Aligned_cols=322 Identities=17% Similarity=0.218 Sum_probs=255.4
Q ss_pred EEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChHH
Q 008205 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 109 (574)
+||.++|++ +..|.....++++|++++|+++++ .|++|+++++|+++++..+.+.+.+|+.+ +|.+|+||.++..
T Consensus 1 ~IG~~~plsG~~a~~g~~~~~g~~la~~~iN~~gGi-~G~~i~lv~~D~~~~p~~a~~~a~~Li~~~~V~aiiG~~~s~~ 79 (347)
T cd06335 1 KIGVDADFSGGSAPSGVSIRRGARLAIDEINAAGGV-LGRKLELVERDDRGNPARGLQNAQELAADEKVVAVLGGLHTPV 79 (347)
T ss_pred CeeeecCccCccccccHHHHHHHHHHHHHHHhcCCc-CCeEEEEEeccCCCCcHHHHHHHHHHhccCCeEEEEcCCCCHH
Confidence 599999998 567888999999999999999988 48999999999999999999999999987 9999999999999
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCC--CCCCceEEecCChHHHHHHHHHHH-HHcCCeEEEEEEEcCCCCcchHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSS--LQYPFFVRTTQSDLYQMAAIADIV-DYFGWRNVIALYVDDDHGRNGIAALG 186 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~--~~~~~~~r~~ps~~~~~~ai~~ll-~~~~W~~v~ii~~~~~~g~~~~~~l~ 186 (574)
+.+++++++..+||+|++.++.+.+.+ ..++|+||+.|++..++.++++++ ++.+|++|+++|.++++|......++
T Consensus 80 ~~a~~~~~~~~~vp~i~~~~~~~~l~~~~~~~~~~Fr~~~~~~~~~~~~a~~~~~~~~~~~v~ii~~~~~~g~~~~~~~~ 159 (347)
T cd06335 80 ALANLEFIQQNKIPLIGPWAAGTPITRNGAPPNYIFRVSADDSIQAPFLVDEAVKRGGFKKVALLLDNTGWGRSNRKDLT 159 (347)
T ss_pred HHhhhHHHHhcCCcEEecCCCCcccccCCCCCCCEEEeccChHHHHHHHHHHHHHhcCCCeEEEEeccCchhhhHHHHHH
Confidence 999999999999999998776666654 346899999999999999999986 55679999999999999999999999
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCC
Q 008205 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDT 266 (574)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~ 266 (574)
+.+++.|+++.....++ .+..|+...+.+|++.++++|++.+.......+++++++.|+... ++..+.....+.
T Consensus 160 ~~~~~~G~~v~~~~~~~--~~~~d~s~~i~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~ 233 (347)
T cd06335 160 AALAARGLKPVAVEWFN--WGDKDMTAQLLRAKAAGADAIIIVGNGPEGAQIANGMAKLGWKVP----IISHWGLSGGNF 233 (347)
T ss_pred HHHHHcCCeeEEEeeec--CCCccHHHHHHHHHhCCCCEEEEEecChHHHHHHHHHHHcCCCCc----EecccCCcCchh
Confidence 99999999998877776 356789999999999999999999999999999999999998532 222211111111
Q ss_pred CCcCChhhhhhccceEEEEEec---CCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCC
Q 008205 267 DSQLHSEKMDDIQGVLTLRMYT---QSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGN 343 (574)
Q Consensus 267 ~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~ 343 (574)
. ........|++....+. +..+..++|.++|+++++..+.. ...++..++.+||+++++++|++++...
T Consensus 234 ~----~~~g~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~~aYd~~~~l~~A~~~ag~~--- 305 (347)
T cd06335 234 I----EGAGPAANDALMIQTFIFEPPSNPKAKAFLAAYHKKYPEKKPA-DIPAPVGAAHAYDAVHLLAAAIKQAGST--- 305 (347)
T ss_pred h----hccchhhcCcEEEEeeccccCCCHHHHHHHHHHHHHhCCCccc-ccCcchhHHHHHHHHHHHHHHHHHhcCC---
Confidence 0 11123456766654332 24678899999999988532111 0123455678999999999999985211
Q ss_pred ccccCCcccccccCCCcccccccccCchHHHHHHHHhc--cccccccc--EEEcCCC
Q 008205 344 ISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQV--NMTGVTGP--IKFTSDR 396 (574)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~--~f~G~tG~--v~Fd~~G 396 (574)
.+..+.+.|+++ .+.|+.|. +.|+...
T Consensus 306 --------------------------~~~~v~~al~~~~~~~~G~~~~~~~~~~~~~ 336 (347)
T cd06335 306 --------------------------DGRAIKRALENLKKPVEGLVKTYDKPFSKED 336 (347)
T ss_pred --------------------------CHHHHHHHHHhccCCceeeecccCCCCChhh
Confidence 246788899876 46677764 4566543
No 68
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=100.00 E-value=5.5e-30 Score=255.24 Aligned_cols=314 Identities=14% Similarity=0.118 Sum_probs=252.2
Q ss_pred EEEEEeccC---CccchhHHHHHHHHHHHHhc-CCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChH
Q 008205 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNS-NPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSV 108 (574)
Q Consensus 34 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~-~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~ 108 (574)
+||++.|++ +..|.....++++|++++|+ .+++ .|++|++++.|++++|..+.+.+.+++.+ +|.+|+||.+|.
T Consensus 1 ~IG~~~~lsG~~a~~G~~~~~g~~lav~~inn~~ggi-~G~~i~lv~~D~~~~p~~a~~~~~~li~~~~V~avvG~~~S~ 79 (333)
T cd06328 1 KIGLITDLSGPLAAYGKQTLTGFMLGLEYATGGTMQV-DGRPIEVIVKDDAGNPEVAVSLARELIGDDGVDILVGSTSSG 79 (333)
T ss_pred CeEEEEecCCchhhhhHHHHHHHHHHHHHHHhcCCCc-CCEEEEEEEecCCCChHHHHHHHHHHHHhcCCeEEEccCCcH
Confidence 599999998 55788899999999999965 4555 68999999999999999999999999998 999999999999
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCC-CCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHH
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSL-QYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGD 187 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~-~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~ 187 (574)
.+.++.+++.+.++|+|++.++++.+... .++|+||+.+++..+..++++++... ++++++||.+++||....+.+++
T Consensus 80 ~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~g~~~~~~~~~ 158 (333)
T cd06328 80 VALAVLPVAEENKKILIVEPAAADSITGKNWNRYTFRTGRNSSQDAIAAAAALGKP-GKKIATLAQDYAFGRDGVAAFKA 158 (333)
T ss_pred HHHHHHHHHHHhCCcEEecCCCCchhhccCCCCcEEEecCChHHHHHHHHHHHHhc-CCeEEEEecCccccHHHHHHHHH
Confidence 99999999999999999987777777653 35899999988888888888877665 89999999999999999999999
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChH-HHHHHHHHHHHCCCCCCCeEEEEeCccccccCC
Q 008205 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI-WGLEVLNAAKHLRMMESGYVWIVTDWLSSILDT 266 (574)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~-~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~ 266 (574)
.+++.|+++.....++ .+..|+..++.+|+..++++|++..... ....+++++...|+... .............
T Consensus 159 ~~~~~G~~vv~~~~~~--~~~~d~~~~v~~l~~~~pd~V~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~ 233 (333)
T cd06328 159 ALEKLGAAIVTEEYAP--TDTTDFTPYAQRLLDALKKVLFVIWAGAGGPWPKLQQMGVLGYGIE---ITLAGDILANLTM 233 (333)
T ss_pred HHHhCCCEEeeeeeCC--CCCcchHHHHHHHHhcCCCEEEEEecCchhHHHHHHHhhhhcCCCe---EEecccccCcccc
Confidence 9999999999877776 4678899999999999999988865444 56677788877765422 2222111111100
Q ss_pred CCcCChhhhhhccceEEEEEec-CCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 008205 267 DSQLHSEKMDDIQGVLTLRMYT-QSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNIS 345 (574)
Q Consensus 267 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~ 345 (574)
........+........ +.++..+.|.++|+++++ ..++.+++..||++.++++|++++..
T Consensus 234 -----~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~g-------~~p~~~~~~~y~a~~~l~~Ai~~ag~------ 295 (333)
T cd06328 234 -----YKAGPGMSGASYYYHYFLPKNPVNDWLVEEHKARFG-------SPPDLFTAGGMSAAIAVVEALEETGD------ 295 (333)
T ss_pred -----ccccccccceeeeecCCCCCCHHHHHHHHHHHHHhC-------CCcchhhHHHHHHHHHHHHHHHHhCC------
Confidence 11123345555544443 566778899999998875 23567788999999999999998621
Q ss_pred ccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCC
Q 008205 346 FSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSD 395 (574)
Q Consensus 346 ~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~ 395 (574)
.++..+.++|++.+|+++.|+++|+.+
T Consensus 296 -----------------------~~~~~v~~aL~~~~~~~~~g~~~f~~~ 322 (333)
T cd06328 296 -----------------------TDTEALIAAMEGMSFETPKGTMTFRKE 322 (333)
T ss_pred -----------------------CCHHHHHHHHhCCeeecCCCceEECcc
Confidence 047889999999999999999999853
No 69
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=99.98 E-value=1e-29 Score=253.67 Aligned_cols=316 Identities=17% Similarity=0.160 Sum_probs=254.5
Q ss_pred EEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChHH
Q 008205 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 109 (574)
+||++.|++ +..|.....++++|+++||+.+++ .|++|+++++|+++++..+++.+.+|+.+ +|.+|||+.+|..
T Consensus 1 kIG~~~plsG~~a~~g~~~~~g~~la~~~iN~~gGi-~G~~i~l~~~D~~~~p~~a~~~a~~Li~~~~v~aviG~~~s~~ 79 (333)
T cd06358 1 RIGLLVPLSGPAGIFGPSCEAAAELAVEEINAAGGI-LGREVELVIVDDGSPPAEAAAAAARLVDEGGVDAIIGWHTSAV 79 (333)
T ss_pred CeEEEecCcCchhhcchhHHHHHHHHHHHHHhcCCc-CCcEEEEEEECCCCChHHHHHHHHHHHHhCCCcEEEecCcHHH
Confidence 599999998 447888999999999999999998 48999999999999999999999999987 8999999999999
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH-HHcCCeEEEEEEEcCCCCcchHHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV-DYFGWRNVIALYVDDDHGRNGIAALGDK 188 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll-~~~~W~~v~ii~~~~~~g~~~~~~l~~~ 188 (574)
+.++.++++ .+||+|++.+.+. ....+++||+.+++..+..++++++ +..+|++|++++.++.+|....+.+++.
T Consensus 80 a~a~~~~~~-~~vp~i~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~~~v~i~~~~~~~g~~~~~~~~~~ 155 (333)
T cd06358 80 RNAVAPVVA-GRVPYVYTSLYEG---GECNPGVFLTGETPEQQLAPAIPWLAEEKGARRWYLIGNDYVWPRGSLAAAKRY 155 (333)
T ss_pred HHHHHHHHh-cCceEEeCCCcCC---CCCCCCEEEcCCCcHHHHHHHHHHHHHhcCCCeEEEEeccchhhHHHHHHHHHH
Confidence 999999999 9999999643322 1235899999999888887777765 5679999999999999999999999999
Q ss_pred HhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCc-cccccCCC
Q 008205 189 LAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDW-LSSILDTD 267 (574)
Q Consensus 189 ~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~-~~~~~~~~ 267 (574)
+++.|+.|.....++ .+..|+..++.++++.++++|++.........+++++++.|+..+ |+.... +.... ..
T Consensus 156 ~~~~G~~v~~~~~~~--~~~~d~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~~~~~G~~~~---~~~~~~~~~~~~-~~ 229 (333)
T cd06358 156 IAELGGEVVGEEYVP--LGTTDFTSVLERIAASGADAVLSTLVGQDAVAFNRQFAAAGLRDR---ILRLSPLMDENM-LL 229 (333)
T ss_pred HHHcCCEEeeeeeec--CChHHHHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHcCCCcc---CceeecccCHHH-HH
Confidence 999999998877676 467899999999999999999988887788899999999998654 332221 11100 00
Q ss_pred CcCChhhhhhccceEEEEEecC--CChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 008205 268 SQLHSEKMDDIQGVLTLRMYTQ--SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNIS 345 (574)
Q Consensus 268 ~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~ 345 (574)
.......+|++....+.+ ..+..++|.+.|+++++. ....++.++...||+++++++|+++.. .
T Consensus 230 ----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~----~~~~~~~~~~~~yda~~~~~~A~~~ag---~--- 295 (333)
T cd06358 230 ----ASGAEAAEGLYSSSGYFASLQTPANAAFLARYRARFGD----DAPPLNSLSESCYEAVHALAAAAERAG---S--- 295 (333)
T ss_pred ----hcChHhhCCcEEeccchhhcCCHHHHHHHHHHHHHcCC----CCCCCChHHHHHHHHHHHHHHHHHHhC---C---
Confidence 001134577666554333 567889999999988752 112356677889999999999998641 1
Q ss_pred ccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCC
Q 008205 346 FSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRD 397 (574)
Q Consensus 346 ~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~ 397 (574)
. ++..|.+.|++++|+|.+|.+.|++++.
T Consensus 296 ----------------------~-~~~~v~~al~~~~~~~~~G~~~~~~~~~ 324 (333)
T cd06358 296 ----------------------L-DPEALIAALEDVSYDGPRGTVTMRGRHA 324 (333)
T ss_pred ----------------------C-CHHHHHHHhccCeeeCCCcceEEccccc
Confidence 0 4788999999999999999999998754
No 70
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=99.97 E-value=3.3e-29 Score=250.67 Aligned_cols=320 Identities=18% Similarity=0.243 Sum_probs=257.0
Q ss_pred EEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChHH
Q 008205 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 109 (574)
+||+++|++ +..|.....++++|++++| +++ .|++++++++|+.+++..+.+.+.+++.+ +|.+||||.++..
T Consensus 1 ~IG~~~~~sg~~~~~g~~~~~g~~~a~~~~~--~~i-~G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~~ 77 (333)
T cd06332 1 KIGLLTTLSGPYAALGQDIRDGFELALKQLG--GKL-GGRPVEVVVEDDELKPDVAVQAARKLIEQDKVDVVVGPVFSNV 77 (333)
T ss_pred CeEEEeeccCchHhhhHHHHHHHHHHHHHhC--CCc-CCeEEEEEEecCCCCHHHHHHHHHHHHHHcCCcEEEcCCccHH
Confidence 599999998 3456788999999999997 344 68999999999999999999999999987 9999999998888
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCC-CCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSL-QYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDK 188 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~-~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~ 188 (574)
..++.+.+...++|+|++++..+.+.+. .+|++||+.|++..+...+++++...+|+++++++.++.++....+.+++.
T Consensus 78 ~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~v~il~~~~~~~~~~~~~~~~~ 157 (333)
T cd06332 78 ALAVVPSLTESGTFLISPNAGPSDLAGKLCSPNFFRTSWQNDQVHEAMGKYAADKGYKKVVIIAPDYAAGKDAVAGFKRT 157 (333)
T ss_pred HHHHHHHHhhcCCeEEecCCCCccccccCCCCcEEEeeCChHHhHHHHHHHHHHhCCceEEEEecCcchhHHHHHHHHHh
Confidence 8888899999999999987776666654 379999999999999999999999999999999999888888888888888
Q ss_pred HhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCC
Q 008205 189 LAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDS 268 (574)
Q Consensus 189 ~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~ 268 (574)
++ + .+.....++ ....|+..+++++++.++++|++......+..+++++++.|+.. ...++.+..+.... ..
T Consensus 158 ~~--~-~~~~~~~~~--~~~~d~~~~i~~l~~~~~d~i~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-~~- 229 (333)
T cd06332 158 FK--G-EVVEEVYTP--LGQLDFSAELAQIRAAKPDAVFVFLPGGMAVNFVKQYDQAGLKK-KIPLYGPGFLTDQD-TL- 229 (333)
T ss_pred hc--E-EEeeEEecC--CCCcchHHHHHHHHhcCCCEEEEecccchHHHHHHHHHHcCccc-CCceeccCCCCCHH-HH-
Confidence 87 3 444444444 34567888999999999999999888788899999999999843 34466655432210 00
Q ss_pred cCChhhhhhccceEEEEEecC--CChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 008205 269 QLHSEKMDDIQGVLTLRMYTQ--SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISF 346 (574)
Q Consensus 269 ~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~ 346 (574)
........|++...++.+ ..+..++|.++|+++++ ..+..++..+||++++++.|++++...
T Consensus 230 ---~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~-------~~~~~~~~~~yda~~~~~~a~~~ag~~------ 293 (333)
T cd06332 230 ---PAQGDAAVGVLTALHWAPDLDNPANKRFVAAYKAAYG-------RVPSVYAAQGYDAAQLLDAALRAVGGD------ 293 (333)
T ss_pred ---HhhchhhcCeeeeeccCCCCCCHHHHHHHHHHHHHhC-------CCCcHHHHHHHHHHHHHHHHHHHhcCC------
Confidence 122345678777766554 35778999999998875 225667889999999999999986211
Q ss_pred cCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCC
Q 008205 347 SEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINP 401 (574)
Q Consensus 347 ~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~ 401 (574)
..++..+.+.|++++|+|++|++.|+++|+....
T Consensus 294 ---------------------~~~~~~v~~al~~~~~~~~~g~i~f~~~~~~~~~ 327 (333)
T cd06332 294 ---------------------LSDKDALRAALRAADFDSPRGPFKFNPNHNPIQD 327 (333)
T ss_pred ---------------------CCCHHHHHHHHhcCceecCccceeECCCCCcccc
Confidence 0136789999999999999999999999886543
No 71
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=99.97 E-value=7.3e-29 Score=247.26 Aligned_cols=318 Identities=12% Similarity=0.080 Sum_probs=253.0
Q ss_pred EEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChHH
Q 008205 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 109 (574)
+||++.|++ +..|.....++++|+++||+.+++. |++|++++.|++++|..+.+.+.+|+.+ +|.+|+|+.+|..
T Consensus 1 ~IG~~~~lSG~~a~~G~~~~~g~~la~~~iNa~gGi~-Gr~v~lv~~D~~~~p~~a~~~~~~Li~~~~V~aiiG~~~s~~ 79 (334)
T cd06356 1 KVGSLEDRSGNFALYGTPKVHATQLAVDEINASGGIL-GREVELVDYDTQSDNERYQQYAQRLALQDKVDVVWGGISSAS 79 (334)
T ss_pred CeEEEecCCCchhhccHHHHHHHHHHHHHHHhcCCCC-CceEEEEEECCCCCHHHHHHHHHHHHHhCCCCEEEeCcchHH
Confidence 599999998 5678899999999999999999985 8999999999999999999999999975 9999999999999
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKL 189 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~ 189 (574)
+.++.+++.+.++|+|....... ....+++||+.+++..+..++++++...+-+++++|+.+++||......+++.+
T Consensus 80 ~~a~~~~~~~~~vp~i~~~~~~~---~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~vail~~d~~~g~~~~~~~~~~~ 156 (334)
T cd06356 80 REAIRPIMDRTKQLYFYTTQYEG---GVCDRNTFCTGATPAQQFSTLVPYMMEKYGKKVYTIAADYNFGQISAEWVRKIV 156 (334)
T ss_pred HHHHHHHHHhcCceEEeCCCccC---CcccCCEEEeCCCcHHHHHHHHHHHHHccCCeEEEECCCchhhHHHHHHHHHHH
Confidence 99999999999999998533221 123489999999999999999998776544889999999999999999999999
Q ss_pred hhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCc
Q 008205 190 AEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQ 269 (574)
Q Consensus 190 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~ 269 (574)
++.|+++.....++ .+..|+...+.+++..+++.|++.........+++++++.|+ . ....+............
T Consensus 157 ~~~G~~vv~~~~~~--~~~~d~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~~~~~G~-~-~~~~~~~~~~~~~~~~~-- 230 (334)
T cd06356 157 EENGGEVVGEEFIP--LDVSDFGSTIQKIQAAKPDFVMSILVGANHLSFYRQWAAAGL-G-NIPMASSTLGAQGYEHK-- 230 (334)
T ss_pred HHcCCEEEeeeecC--CCchhHHHHHHHHHhcCCCEEEEeccCCcHHHHHHHHHHcCC-c-cCceeeeecccchhHHh--
Confidence 99999998877776 467899999999999999999998777788899999999998 1 11122221110000000
Q ss_pred CChhhhhhccceEEEEEecC--CChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 008205 270 LHSEKMDDIQGVLTLRMYTQ--SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFS 347 (574)
Q Consensus 270 ~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~ 347 (574)
.-.....+|++....+.+ ..+..++|.+.|+++++. ...++..++..||+++++++|++++.+.
T Consensus 231 --~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-----~p~~~~~~~~~y~a~~~~~~A~~~ag~~------- 296 (334)
T cd06356 231 --RLKPPALKDMYATANYIEELDTPANKAFVERFRAKFPD-----APYINEEAENNYEAIYLYKEAVEKAGTT------- 296 (334)
T ss_pred --ccCchhcCCeEEecchhhhcCCHHHHHHHHHHHHHcCC-----CCCCCchhHHHHHHHHHHHHHHHHHCCC-------
Confidence 001134567766554433 356789999999998752 1112456889999999999999985210
Q ss_pred CCcccccccCCCcccccccccCchHHHHHHHHh-cccccccccEEEcCCCC
Q 008205 348 EDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQ-VNMTGVTGPIKFTSDRD 397 (574)
Q Consensus 348 ~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~-~~f~G~tG~v~Fd~~G~ 397 (574)
++..|.++|++ ..|+|..|++.|+..++
T Consensus 297 ----------------------~~~~v~~aL~~~~~~~~~~g~~~~~~~~h 325 (334)
T cd06356 297 ----------------------DRDAVIEALESGLVCDGPEGKVCIDGKTH 325 (334)
T ss_pred ----------------------CHHHHHHHHHhCCceeCCCceEEEecCCC
Confidence 47889999997 57899999999997544
No 72
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=99.97 E-value=6.3e-29 Score=248.45 Aligned_cols=333 Identities=14% Similarity=0.133 Sum_probs=258.5
Q ss_pred EEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChHH
Q 008205 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 109 (574)
+||++.|++ +..|..+..++++|+++||+.+++ .|++|+++++|++++|..+++.+.+|+.+ +|.+|+ +.+|..
T Consensus 1 kIG~~~plsG~~a~~G~~~~~g~~la~~~iNa~GGI-~Gr~ielv~~D~~~~p~~a~~~a~~Li~~~~V~~i~-~~~S~~ 78 (351)
T cd06334 1 KVGLLADRTGPTAFVGIPYAAGFADYFKYINEDGGI-NGVKLEWEECDTGYEVPRGVECYERLKGEDGAVAFQ-GWSTGI 78 (351)
T ss_pred CCCccccCCCcccccChhHHHHHHHHHHHHHHcCCc-CCeEEEEEEecCCCCcHHHHHHHHHHhccCCcEEEe-cCcHHH
Confidence 589999998 667888999999999999999998 48999999999999999999999999988 777765 577888
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCC-CCCCceEEecCChHHHHHHHHHHHHHcC-----CeEEEEEEEcCCCCcchHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFG-----WRNVIALYVDDDHGRNGIA 183 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~ll~~~~-----W~~v~ii~~~~~~g~~~~~ 183 (574)
+.++++++.+.+||+|+++++.+.+++ ..++|+||+.|++..+..++++++...+ .+++++|+.+++||....+
T Consensus 79 ~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~~~~~Fr~~~~~~~~~~~l~~~~~~~~~~~~~~~kvaiv~~~~~~g~~~~~ 158 (351)
T cd06334 79 TEALIPKIAADKIPLMSGSYGATLADDGAVFPYNFPVGPTYSDQARALVQYIAEQEGGKLKGKKIALVYHDSPFGKEPIE 158 (351)
T ss_pred HHHhhHHHhhcCCcEEecccchhhccCCCCCCeeeeCCCCHHHHHHHHHHHHHHhcccCCCCCeEEEEeCCCccchhhHH
Confidence 889999999999999998766665553 4689999999999999999999987655 6999999999999999999
Q ss_pred HHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccc
Q 008205 184 ALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSI 263 (574)
Q Consensus 184 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~ 263 (574)
.+++.+++.|++++....++ .+..|+..++.+++..++++|++.....++..++++++++|+... |+.+.+....
T Consensus 159 ~~~~~~~~~G~~vv~~~~~~--~~~~D~~~~v~~i~~~~pd~V~~~~~~~~~~~~~~~~~~~G~~~~---~~~~~~~~~~ 233 (351)
T cd06334 159 ALKALAEKLGFEVVLEPVPP--PGPNDQKAQWLQIRRSGPDYVILWGWGVMNPVAIKEAKRVGLDDK---FIGNWWSGDE 233 (351)
T ss_pred HHHHHHHHcCCeeeeeccCC--CCcccHHHHHHHHHHcCCCEEEEecccchHHHHHHHHHHcCCCce---EEEeeccCcH
Confidence 99999999999998877766 456899999999999999999999999999999999999998432 5544322111
Q ss_pred cCCCCcCChhhhhhccceEEEEEecC--CChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcC
Q 008205 264 LDTDSQLHSEKMDDIQGVLTLRMYTQ--SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQG 341 (574)
Q Consensus 264 ~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~ 341 (574)
... .......+|+++..++.+ .++..++|.+.|+++++..+. ....++.++...||+++++++|++++.+..
T Consensus 234 -~~~----~~~g~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~gy~a~~~l~~Al~~ag~~~ 307 (351)
T cd06334 234 -EDV----KPAGDAAKGYKGVTPFAGGADDPVGKEIVKEVYDKGKGSGN-DKEIGSVYYNRGVVNAMIMVEAIRRAQEKG 307 (351)
T ss_pred -HHH----HHhhhhhcCcEEeecccCCCCchHHHHHHHHHHHccCCCCC-cccccccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 110 122245678777665543 567899999999988752111 012335678899999999999999987654
Q ss_pred CCccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCC
Q 008205 342 GNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSD 395 (574)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~ 395 (574)
..-.... .....+-..-++.+++....|+.|+++|...
T Consensus 308 ~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 345 (351)
T cd06334 308 GETTIAG----------------EEQLENLKLDAARLEELGAEGLGPPVSVSCD 345 (351)
T ss_pred CCCCCcH----------------HHHHHhhhhhhhhhhhcCcccccCCceeccc
Confidence 3210000 0000011233456666677889999999763
No 73
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=99.97 E-value=2e-29 Score=247.93 Aligned_cols=223 Identities=33% Similarity=0.491 Sum_probs=199.1
Q ss_pred EEEEEeccCC-----ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHh-----cCcEEEEc
Q 008205 34 NIGAVFALNS-----TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLE-----NETVAIIG 103 (574)
Q Consensus 34 ~IG~l~~~~~-----~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~-----~~v~aiiG 103 (574)
+||++|+.+. ..+.....++..|++++|.. ++++++++.++|+++++..+...+.+++. +++.+|+|
T Consensus 1 ~iG~~f~~~~~~~~~~~~~~~~~~~~~~~~~~n~~---~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~aiiG 77 (298)
T cd06269 1 RIGGLFPLHSGGRFGEEGAFRAAAALFAVEEINND---LPNTTLGYEIYDSCCSPSDAFSAALDLCSLLEKSRGVVAVIG 77 (298)
T ss_pred CEEEEeecccccccCHHHHHHHHHHHHHHHHHhcc---CCCCeeeeEEEecCCChHHHHHHHHHHHhcCCCCCceEEEEC
Confidence 4899999874 23456678889999999988 57899999999999988877777777765 49999999
Q ss_pred CCChHHHHHHHHhhccCCccEEecccCCCCcCC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchH
Q 008205 104 PQFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGI 182 (574)
Q Consensus 104 p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~ 182 (574)
|.++..+.+++++++.++||+|++.++++.+++ ..+|+++|+.|++..++.++++++++++|++|+++|++++++....
T Consensus 78 ~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~l~~~~w~~v~~v~~~~~~~~~~~ 157 (298)
T cd06269 78 PSSSSSAEAVASLLGALHIPQISYSATSPLLSDKEQFPSFLRTVPSDSSQAQAIVDLLKHFGWTWVGLVYSDDDYGRRLL 157 (298)
T ss_pred CCCchHHHHHHHHhccCCCcEEecccCchhhcChhhCCCeEecCCCcHHHHHHHHHHHHHCCCeEEEEEEecchhhHHHH
Confidence 999999999999999999999999888888876 4789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCcccc
Q 008205 183 AALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSS 262 (574)
Q Consensus 183 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~ 262 (574)
+.+++.+++.++++.....++ ....++...++++++.++++||+++..+.+..++++|.++||+ .+|+||+++.+..
T Consensus 158 ~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~-~~~~~i~~~~~~~ 234 (298)
T cd06269 158 ELLEEELEKNGICVAFVESIP--DGSEDIRRLLKELKSSTARVIVVFSSEEDALRLLEEAVELGMM-TGYHWIITDLWLT 234 (298)
T ss_pred HHHHHHHHHCCeeEEEEEEcC--CCHHHHHHHHHHHHhcCCcEEEEEechHHHHHHHHHHHHcCCC-CCeEEEEEChhhc
Confidence 999999999999998877666 3447899999999999999999999989999999999999999 8999999987654
No 74
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=99.97 E-value=3.9e-28 Score=244.24 Aligned_cols=329 Identities=14% Similarity=0.098 Sum_probs=249.1
Q ss_pred EEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCC--cEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCCh
Q 008205 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGG--TKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFS 107 (574)
Q Consensus 34 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g--~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s 107 (574)
+||++.|++ +..|.....+++++++++|...++ .| ++|+++++|++++|.++++.+.+|+.+ +|.+|+|+.+|
T Consensus 1 kIG~~~~lSG~~a~~G~~~~~~~~~~~~~in~g~~i-~G~~~~i~lv~~D~~~~p~~a~~~a~~li~~d~v~~iiG~~~s 79 (357)
T cd06337 1 KIGYVSPRTGPLAAFGEADPWVLETMRSALADGLVV-GGSTYEVEIIVRDSQSNPNRAGLVAQELILTDKVDLLLAGGTP 79 (357)
T ss_pred CcceeccCcCcccccccchHHHHHHHHHHhcCCeeE-CCceeEEEEEEecCCCCHHHHHHHHHHHHhccCccEEEecCCc
Confidence 589999998 567888889999999999954433 34 589999999999999999999999987 99999999999
Q ss_pred HHHHHHHHhhccCCccEEecccCCCCc-------CCCCCCceEEecCChHHHHHHHHHHHHHcC-CeEEEEEEEcCCCCc
Q 008205 108 VIAHLVSHIANEFQVPLLSFAATDPSL-------SSLQYPFFVRTTQSDLYQMAAIADIVDYFG-WRNVIALYVDDDHGR 179 (574)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~~~~~~l-------s~~~~~~~~r~~ps~~~~~~ai~~ll~~~~-W~~v~ii~~~~~~g~ 179 (574)
..+.++++++.+.+||+|++.++.+.+ ....++|+||+.+++..+..+++++++..+ ++++++++.++.||.
T Consensus 80 ~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~k~v~ii~~~~~~g~ 159 (357)
T cd06337 80 DTTNPVSDQCEANGVPCISTMAPWQAWFFGRGGNPATGFKWTYHFFWGAEDVVATYVGMWKQLETNKKVGILYPNDPDGN 159 (357)
T ss_pred chhhHHHHHHHHhCCCeEEeccchhhhhccCCCCcccCCceeEEecCCHHHHHHHHHHHHHhCCCCceEEEEeecCchhH
Confidence 988999999999999999864432111 112478999999999888889988888877 999999999999998
Q ss_pred chHHHHH---HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 180 NGIAALG---DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 180 ~~~~~l~---~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
...+.+. +.+++.|+++.....++ .+..|+..++.+|+++++++|++.+.+.++..++++++++|+..+ ++.
T Consensus 160 ~~~~~~~~~~~~~~~~G~~vv~~~~~~--~~~~D~~~~v~~ik~a~pD~v~~~~~~~~~~~~~~~~~~~G~~~~---~~~ 234 (357)
T cd06337 160 AFADPVIGLPAALADAGYKLVDPGRFE--PGTDDFSSQINAFKREGVDIVTGFAIPPDFATFWRQAAQAGFKPK---IVT 234 (357)
T ss_pred HHHHhhhcccHHHHhCCcEEecccccC--CCCCcHHHHHHHHHhcCCCEEEeCCCccHHHHHHHHHHHCCCCCC---eEE
Confidence 7665544 56677899998777776 457789999999999999999999899999999999999998544 333
Q ss_pred eCccccccCCCCcCChhhhhhccceEEEEEecCC--------ChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHH
Q 008205 257 TDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQS--------SEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLW 328 (574)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~ 328 (574)
........... .......+|++....+.+. ++..++|.++|+++++. .+.....+.||++.
T Consensus 235 ~~~~~~~~~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~-------~~~~~~~~~~~~~~ 303 (357)
T cd06337 235 IAKALLFPEDV----EALGDRGDGMSTEVWWSPSHPFRSSLTGQSAAELADAYEAATGR-------QWTQPLGYAHALFE 303 (357)
T ss_pred EeccccCHHHH----HHhhhhhcCccccceeccCCCcccccCCccHHHHHHHHHHHhCC-------CccCcchHHHHHHH
Confidence 22111000000 1111234565544333322 23478999999888752 22334567899999
Q ss_pred HHHHHHHHHhhcCCCccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEe
Q 008205 329 LLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINV 408 (574)
Q Consensus 329 ~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~ 408 (574)
++++|++++... .++..|.++|++++++++.|++.|+++ .. ....|..+
T Consensus 304 ~l~~Ai~~Ags~----------------------------~d~~~v~~aL~~~~~~~~~G~~~f~~~--~~-~~~~~~~~ 352 (357)
T cd06337 304 VGVKALVRADDP----------------------------DDPAAVADAIATLKLDTVVGPVDFGNS--PI-KNVAKTPL 352 (357)
T ss_pred HHHHHHHHcCCC----------------------------CCHHHHHHHHHcCCcccceeeeecCCC--CC-cccccccc
Confidence 999999975221 047789999999999999999999865 22 33455555
Q ss_pred ec
Q 008205 409 IG 410 (574)
Q Consensus 409 ~~ 410 (574)
.+
T Consensus 353 ~~ 354 (357)
T cd06337 353 VG 354 (357)
T ss_pred cc
Confidence 44
No 75
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=99.96 E-value=1e-27 Score=228.93 Aligned_cols=334 Identities=14% Similarity=0.097 Sum_probs=231.7
Q ss_pred EEEEEEeccCC---ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHh-cCcEEEEcCCChH
Q 008205 33 LNIGAVFALNS---TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLE-NETVAIIGPQFSV 108 (574)
Q Consensus 33 i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~-~~v~aiiGp~~s~ 108 (574)
|+||+|++++. ..+..+..|..+|+++||++++++ |++|+.+++|.++|+..-.+.+.+|+. ++|.+|+|...|.
T Consensus 1 ikVGiL~S~tG~~a~~e~~~~~~~~lAI~eINa~GGvl-G~~le~v~~Dp~Sd~~~ya~~A~~Li~~d~V~~ifGc~TSa 79 (363)
T PF13433_consen 1 IKVGILHSLTGTMAISERSLLDGALLAIEEINAAGGVL-GRQLEPVIYDPASDPSTYAEKAEKLIREDGVRAIFGCYTSA 79 (363)
T ss_dssp --EEEE--SSSTTHHHHHHHHHHHHHHHHHHHCTTTBT-TB--EEEEE--TT-HHHHHHHHHHHHHHS---EEEE--SHH
T ss_pred CeEEEEEeCCCchHhhhHHHHHHHHHHHHHHHhcCCcC-CeEEEEEEECCCCCHHHHHHHHHHHHHhCCccEEEecchhh
Confidence 68999999983 345678899999999999999997 799999999999999999999999986 5999999999999
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHH-HHHcCCeEEEEEEEcCCCCcchHHHHHH
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADI-VDYFGWRNVIALYVDDDHGRNGIAALGD 187 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~l-l~~~~W~~v~ii~~~~~~g~~~~~~l~~ 187 (574)
+-+++.++.++++-++..+.. -..+ ...|+.|-+.+...++...++++ +.+||-+++.+|.+|..|+...-..+++
T Consensus 80 sRKaVlPvvE~~~~LL~Yp~~-YEG~--E~S~nviYtGa~PNQ~~~pl~~~~~~~~G~~r~~lvGSdYv~pre~Nri~r~ 156 (363)
T PF13433_consen 80 SRKAVLPVVERHNALLFYPTQ-YEGF--ECSPNVIYTGAAPNQQLLPLIDYLLENFGAKRFYLVGSDYVYPRESNRIIRD 156 (363)
T ss_dssp HHHHHHHHHHHCT-EEEE-S-----------TTEEE-S--GGGTHHHHHHHHHHHS--SEEEEEEESSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCceEEeccc-cccc--cCCCceEEcCCCchhhHHHHHHHHHhccCCceEEEecCCccchHHHHHHHHH
Confidence 999999999999999997531 1111 34589999999999999999986 6889999999999999999999999999
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCC
Q 008205 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTD 267 (574)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~ 267 (574)
.+++.|..+.....+| .+.+++..++++|+..++++|+-..-++....|+++..+.|+.....-.+..+.........
T Consensus 157 ~l~~~GgevvgE~Y~p--lg~td~~~ii~~I~~~~Pd~V~stlvG~s~~aF~r~~~~aG~~~~~~Pi~S~~~~E~E~~~~ 234 (363)
T PF13433_consen 157 LLEARGGEVVGERYLP--LGATDFDPIIAEIKAAKPDFVFSTLVGDSNVAFYRAYAAAGLDPERIPIASLSTSEAELAAM 234 (363)
T ss_dssp HHHHTT-EEEEEEEE---S-HHHHHHHHHHHHHHT-SEEEEE--TTCHHHHHHHHHHHH-SSS---EEESS--HHHHTTS
T ss_pred HHHHcCCEEEEEEEec--CCchhHHHHHHHHHhhCCCEEEEeCcCCcHHHHHHHHHHcCCCcccCeEEEEecCHHHHhhc
Confidence 9999999999999888 57799999999999999999999888899999999999999875433333332222211111
Q ss_pred CcCChhhhhhccceEEEEEec--CCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 008205 268 SQLHSEKMDDIQGVLTLRMYT--QSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNIS 345 (574)
Q Consensus 268 ~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~ 345 (574)
-.+...|.+....+. -+++..+.|+++|+++++. ...++.....+|-+|+++++|++++.+.
T Consensus 235 ------g~~~~~Gh~~~~~YFqsidtp~N~~Fv~~~~~~~g~-----~~v~s~~~eaaY~~v~l~a~Av~~ags~----- 298 (363)
T PF13433_consen 235 ------GAEAAAGHYTSAPYFQSIDTPENQAFVARFRARYGD-----DRVTSDPMEAAYFQVHLWAQAVEKAGSD----- 298 (363)
T ss_dssp -------HHHHTT-EEEES--TT-SSHHHHHHHHHHHTTS-T-----T----HHHHHHHHHHHHHHHHHHHHTS------
T ss_pred ------ChhhcCCcEEeehhhhhCCcHHHHHHHHHHHHHhCC-----CCCCCcHHHHHHHHHHHHHHHHHHhCCC-----
Confidence 123677877765543 3578999999999998862 2234555667999999999999997221
Q ss_pred ccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeecCeEEEEEEeeCCC
Q 008205 346 FSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHS 423 (574)
Q Consensus 346 ~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~~~~~~VG~w~~~~ 423 (574)
+...++++|...+|++..|.|.+|...+.. .....||.++.+.
T Consensus 299 ------------------------d~~~vr~al~g~~~~aP~G~v~id~~n~H~-----------~l~~rIg~~~~dG 341 (363)
T PF13433_consen 299 ------------------------DPEAVREALAGQSFDAPQGRVRIDPDNHHT-----------WLPPRIGRVNADG 341 (363)
T ss_dssp -------------------------HHHHHHHHTT--EEETTEEEEE-TTTSBE-----------EB--EEEEE-TTS
T ss_pred ------------------------CHHHHHHHhcCCeecCCCcceEEcCCCCee-----------cccceEEEEcCCC
Confidence 588999999999999999999999843211 1246688887643
No 76
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=99.96 E-value=8.3e-27 Score=233.52 Aligned_cols=317 Identities=15% Similarity=0.193 Sum_probs=249.3
Q ss_pred EEEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChH
Q 008205 33 LNIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSV 108 (574)
Q Consensus 33 i~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~ 108 (574)
|+||++.|++ +..|.....++++|+++||+.+++ .|++|++...|+++|+..+.+.+.+++.+ +|.+|||+.++.
T Consensus 1 i~IG~~~~lsG~~a~~g~~~~~~~~~a~~~iN~~ggi-~G~~v~l~~~D~~~d~~~~~~~~~~l~~~~~v~avig~~~s~ 79 (336)
T cd06326 1 IVLGQSAPLSGPAAALGRAYRAGAQAYFDAVNAAGGV-NGRKIELVTLDDGYEPERTVANTRKLIEDDKVFALFGYVGTP 79 (336)
T ss_pred CEEEEeccCCCcchhhHHHHHHHHHHHHHHHHhcCCc-CCceEEEEEeCCCCChHHHHHHHHHHHhhcCcEEEEeCCCch
Confidence 6899999998 456788999999999999999887 58999999999999999999999999986 999999998887
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHH
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDK 188 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~ 188 (574)
.+..+.+++...+||+|++.+.++.++....+++||+.|+.......+++++.++||+++++++.++.++....+.+++.
T Consensus 80 ~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~~~~~~~~~~~~~~~~~ 159 (336)
T cd06326 80 TTAAALPLLEEAGVPLVGPFTGASSLRDPPDRNVFNVRASYADEIAAIVRHLVTLGLKRIAVFYQDDAFGKDGLAGVEKA 159 (336)
T ss_pred hHHHHHHHHHHcCCeEEEecCCcHHhcCCCCCceEEeCCChHHHHHHHHHHHHHhCCceEEEEEecCcchHHHHHHHHHH
Confidence 77778899999999999976555544433468999999999999999999999999999999999888999999999999
Q ss_pred HhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCC
Q 008205 189 LAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDS 268 (574)
Q Consensus 189 ~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~ 268 (574)
+++.|+++.....++ .+..++..++.++++.++++|++..+...+..+++++++.|+..+ . +........ ...
T Consensus 160 ~~~~G~~~~~~~~~~--~~~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~i~~~~~~G~~~~-~--~~~~~~~~~-~~~- 232 (336)
T cd06326 160 LAARGLKPVATASYE--RNTADVAAAVAQLAAARPQAVIMVGAYKAAAAFIRALRKAGGGAQ-F--YNLSFVGAD-ALA- 232 (336)
T ss_pred HHHcCCCeEEEEeec--CCcccHHHHHHHHHhcCCCEEEEEcCcHHHHHHHHHHHhcCCCCc-E--EEEeccCHH-HHH-
Confidence 999999876665555 345688999999998889999998888889999999999998542 2 222211110 000
Q ss_pred cCChhhhhhccceEEEEEe----cCCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCc
Q 008205 269 QLHSEKMDDIQGVLTLRMY----TQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNI 344 (574)
Q Consensus 269 ~~~~~~~~~~~g~~~~~~~----~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~ 344 (574)
.......+|++..... ....+..+.|.+.|+++++. ..++..+...||+++++++|++++...
T Consensus 233 ---~~~g~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~~~~~~~~~y~~~~~~~~a~~~~g~~---- 299 (336)
T cd06326 233 ---RLLGEYARGVIVTQVVPNPWSRTLPIVREYQAAMKAYGPG------APPSYVSLEGYIAAKVLVEALRRAGPD---- 299 (336)
T ss_pred ---HHhhhhhcceEEEEEecCccccCCHHHHHHHHHHHhhCCC------CCCCeeeehhHHHHHHHHHHHHHcCCC----
Confidence 1122345676543221 12356788999999877641 234556778999999999999974211
Q ss_pred cccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccc-cEEEcC
Q 008205 345 SFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTG-PIKFTS 394 (574)
Q Consensus 345 ~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG-~v~Fd~ 394 (574)
.++..+.++|++++..+..| .+.|+.
T Consensus 300 ------------------------~~~~~v~~al~~~~~~~~~g~~~~~~~ 326 (336)
T cd06326 300 ------------------------PTRESLLAALEAMGKFDLGGFRLDFSP 326 (336)
T ss_pred ------------------------CCHHHHHHHHHhcCCCCCCCeEEecCc
Confidence 04889999999988755544 899976
No 77
>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C. Ligand-binding domain of the membrane guanylyl cyclase C (GC-C or StaR). StaR is a key receptor for the STa (Escherichia coli Heat Stable enterotoxin), a potent stimulant of intestinal chloride and bicarbonate secretion that cause acute secretory diarrhea. The catalytic domain of the STa/guanylin receptor type membrane GC is highly similar to those of the natriuretic peptide receptor (NPR) type and sensory organ-specific type membrane GCs (GC-D, GC-E and GC-F). The GC-C receptor is mainly expressed in the intestine of most vertebrates, but is also found in the kidney and other organs. Moreover, GC-C is activated by guanylin and uroguanylin, endogenous peptide ligands synthesized in the intestine and kidney. Consequently, the receptor activation results in increased cGMP levels and phosphorylation of the CFTR chloride channel and secretion.
Probab=99.96 E-value=2e-26 Score=219.07 Aligned_cols=324 Identities=16% Similarity=0.176 Sum_probs=243.6
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCcEEEE----------EEecCCC--CHHHHHHHHHHhHhc--CcEEEEcCCChHHHH
Q 008205 46 GKVAKVAIEAAVEDVNSNPAILGGTKLKL----------TVHDTNY--SRFLGMVEALTLLEN--ETVAIIGPQFSVIAH 111 (574)
Q Consensus 46 g~~~~~a~~~Av~~iN~~~~~l~g~~l~~----------~~~d~~~--~~~~a~~~~~~l~~~--~v~aiiGp~~s~~~~ 111 (574)
-+....|+..|++.+++.. ..+|.++++ +..+.+| +.-++++...++... .-.+++||.|..++.
T Consensus 17 ~~~v~~av~~a~~~~~~~~-~~~g~~f~~~a~~~~~~~~~y~~~~C~sstceg~~~l~~l~~~~~~gcv~lGP~CtYat~ 95 (380)
T cd06369 17 LKFVKEAVEEAIEIVAERL-AEAGLNVTVNANFEGFNTSLYRSRGCRSSTCEGVELLKKLSVTGRLGCVLLGPSCTYATF 95 (380)
T ss_pred HHHHHHHHHHHHHHHHhhh-hccCceEEEEEeeeccccceeccCCCCcccchHHHHHHHHHhcCccCcEEEcCccceehh
Confidence 3567899999999998754 336777776 5555555 456777777777765 577899999999999
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH------HHcCCeEEEEEEEcCCCCc---chH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV------DYFGWRNVIALYVDDDHGR---NGI 182 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll------~~~~W~~v~ii~~~~~~g~---~~~ 182 (574)
+++.+...|++|+||.++.. ++-...+++-|+.|+...++..+.++. ++++|++.. ||.+++..+ --+
T Consensus 96 ~~~~~~~~~~~P~ISaGsfg--lscd~k~~LTR~~pparK~~~~~~~f~~~~~~~~~~~W~~ay-vyk~~~~~edCf~~i 172 (380)
T cd06369 96 QMVDDEFNLSLPIISAGSFG--LSCDYKENLTRLLPPARKISDFFVDFWKEKNFPKKPKWETAY-VYKKQENTEDCFWYI 172 (380)
T ss_pred hhhhhhhcCCCceEeccccc--cCCCchhhhhhcCchHHHHHHHHHHHHhcccccCCCCCceeE-EEcCCCCccceeeEh
Confidence 99999999999999966543 443445689999999999999999999 489998555 997764332 234
Q ss_pred HHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCcccc
Q 008205 183 AALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSS 262 (574)
Q Consensus 183 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~ 262 (574)
.++....+..+..+.....+ ...+++.+++++++ ..+||||++++++..+.++.+ ++..++|++|..+....
T Consensus 173 ~al~a~~~~f~~~~~~~~~l---~~~~~~~~il~~~~-~~sRIiImCG~p~~ir~lm~~----~~~~gDYVf~~IDlF~~ 244 (380)
T cd06369 173 NALEAGVAYFSSALKFKELL---RTEEELQKLLTDKN-RKSNVIIMCGTPEDIVNLKGD----RAVAEDIVIILIDLFND 244 (380)
T ss_pred Hhhhhhhhhhhhcccceeee---cCchhHHHHHHHhc-cCccEEEEeCCHHHHHHHHhc----CccCCCEEEEEEecccc
Confidence 55555555555455444333 24467888888875 678999999999999999886 44457999999986654
Q ss_pred ccCCCCcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhccCCCCCCCCC-ChhHHHHHHHHHHHHHHHHHHhhcC
Q 008205 263 ILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGL-NSFGLYAYDTLWLLAHAIGAFFDQG 341 (574)
Q Consensus 263 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~yDav~~~a~Al~~~~~~~ 341 (574)
.... +.....++++++.+++..|+.+.+++. . +.+ ... +.+++..||||+++|+||++.++.+
T Consensus 245 sy~~----d~~a~~amqsVLvIT~~~p~~~~~~~~-------~---~fn--~~l~~~~aa~fyDaVLLYa~AL~EtL~~G 308 (380)
T cd06369 245 VYYE----NTTSPPYMRNVLVLTLPPRNSTNNSSF-------T---TDN--SLLKDDYVAAYHDGVLLFGHVLKKFLESQ 308 (380)
T ss_pred hhcc----CcchHHHHhceEEEecCCCCCcccccC-------C---CCC--cchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3321 123456889999998877766544331 1 111 112 2788999999999999999999887
Q ss_pred CCccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeec--CeEEEEEEe
Q 008205 342 GNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIG--TGSRRIGYW 419 (574)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~--~~~~~VG~w 419 (574)
.+. .+..+.+.|++.+|+|++|.|++|++|||. ..|.++.+.. ++++.||.|
T Consensus 309 ~~~-------------------------~~~~I~~~m~NrTF~GitG~V~IDeNGDRd-~dfsLl~ms~~tg~y~vV~~y 362 (380)
T cd06369 309 EGV-------------------------QTFSFINEFRNISFEGAGGPYTLDEYGDRD-VNFTLLYTSTDTSKYKVLFEF 362 (380)
T ss_pred CCC-------------------------CcHHHHHHHhCcceecCCCceEeCCCCCcc-CceEEEEeeCCCCCeEEEEEE
Confidence 542 248899999999999999999999999984 8899998864 679999999
Q ss_pred eCCC
Q 008205 420 SNHS 423 (574)
Q Consensus 420 ~~~~ 423 (574)
+...
T Consensus 363 ~t~~ 366 (380)
T cd06369 363 DTST 366 (380)
T ss_pred ECCC
Confidence 8743
No 78
>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=99.96 E-value=4.9e-27 Score=254.34 Aligned_cols=301 Identities=30% Similarity=0.543 Sum_probs=243.3
Q ss_pred HHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCcCChhhhhhccceEEEEEecCCChH
Q 008205 214 TLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEE 293 (574)
Q Consensus 214 ~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 293 (574)
.+..++....+++++++.+..+..++.+|.++||+..+|+|+.++......+.... ....+...+.++...+.+.+..
T Consensus 5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~i~t~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~s~~ 82 (656)
T KOG1052|consen 5 LLLKLKAMRTRVFVLHMFPILALAIFSQAEELGMMQFGYVWILTNLLTDALDLDEL--YSLIDVMNGVLGLRGHIPRSEL 82 (656)
T ss_pred HHHHhhccCceEEEEeCCHHHHHHHHHHHHHhCccccCeEEEEEecchhhhccccc--ccchhheeeEEeeccCCCccHH
Confidence 34455567889999999999999999999999999999999999987766665432 2334567788888777788888
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCccccCCcccccccCCCcccccccccCchHH
Q 008205 294 KRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKM 373 (574)
Q Consensus 294 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~ 373 (574)
.+.|..+|+.. ......++..+||++++++.|++++... ....++|.....|.++..
T Consensus 83 ~~~~~~~~~~~--------~~~~~~~~~~~~D~~~~~a~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~ 139 (656)
T KOG1052|consen 83 LQNFVTRWQTS--------NVELLVYALWAYDAIQALARAVESLLNI---------------GNLSLSCGRNNSWLDALG 139 (656)
T ss_pred HHHHHHHHhhc--------cccccchhhHHHHHHHHHHHHHHHhhcC---------------CCCceecCCCCcccchhH
Confidence 88898888754 1234567899999999999999988651 122456776667778899
Q ss_pred HHHHHHhccccc---ccccEEEcCCCCCCCCcEEEEEeecCeEEEEEEeeCCCCCcccCcccccCCCCCCCCCcccccee
Q 008205 374 LLDNILQVNMTG---VTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLSVVPPEALYKEPSNRSASSQHLYSA 450 (574)
Q Consensus 374 l~~~l~~~~f~G---~tG~v~Fd~~G~r~~~~~~i~~~~~~~~~~VG~w~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~i 450 (574)
+.+.++.....+ .+|.++++.++.+.++.++++++.+.+...||.|++..| ..|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n~~~~~~~~ig~W~~~~~-----------------------~~i 196 (656)
T KOG1052|consen 140 VFNFGKKLLVVNLSGVTGQFQFFRGGLLEYFKYEILNLNGSGERRIGYWYPRGG-----------------------ENI 196 (656)
T ss_pred HHHHHHhhhhhccccceeEEEecCCCccccceEEEEEecCcCceeEEEecCCCC-----------------------cee
Confidence 999999876554 457788888889999999999999888888999998654 367
Q ss_pred ecCCCCccCCCceeecCCCCceEEeccCccccccceec---cCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCC--
Q 008205 451 VWPGQTTQKPRGWVFPNNGRHLRIGVPSQVIYPEFVAQ---GKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGH-- 525 (574)
Q Consensus 451 ~w~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~-- 525 (574)
.||+.....|.++..+.++++++|+++.+.||..++.. ..++++++||||||++++++.|+|+ |+++.+.|++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~P~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~--~~~~~~~~~~g~ 274 (656)
T KOG1052|consen 197 SWPGKDYFVPKGWFFPTNGKPLRVGVVTEPPFVDLVEDLAILNGNDRIEGFEIDLLQALAKRLNFS--YEIIFVPDGSGS 274 (656)
T ss_pred eccCCcccCcCCccccCCCceEEEEEeccCCceeeeecccccCCCCccceEEehHHHHHHHhCCCc--eEEEEcCCCCCC
Confidence 89999888999888776789999999998888877654 3467899999999999999999999 8888887764
Q ss_pred --CCCChHHHHHHhhhcccccccccccceeeeEEEEeeCc----eeeeccccc
Q 008205 526 --NSPKRFDLLRLVSEEVSMKRKKIFFNLVILFAILANGG----FLVPCRSMT 572 (574)
Q Consensus 526 --~~~~~~gli~~l~~~~~d~~~~~~~~~~~~~~~~~~~~----~~v~f~~~~ 572 (574)
++|+||||+++|.+|+||++ +++||+++|+ ||+||+.+.
T Consensus 275 ~~~~g~~~g~v~~l~~~~advg--------~~~tit~~R~~~vdfT~p~~~~~ 319 (656)
T KOG1052|consen 275 RDPNGNWDGLVGQLVDGEADVG--------ADITITPERSKYVDFTIPYLQFG 319 (656)
T ss_pred CCCCCChhHHHHHHhcCccccc--------cceEEeecccccEEeccceEecc
Confidence 44799999999999997765 2599999998 777776653
No 79
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=99.96 E-value=3.8e-27 Score=234.67 Aligned_cols=302 Identities=16% Similarity=0.116 Sum_probs=235.2
Q ss_pred EEEEEeccCC---ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHH
Q 008205 34 NIGAVFALNS---TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIA 110 (574)
Q Consensus 34 ~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~ 110 (574)
+||+++|++. ..|.....++++|++++| |++++++++|+.+ +..+.+.+.+++.++|.+||||.+|..+
T Consensus 1 kIG~l~plsG~~a~~g~~~~~g~~lA~~~in-------G~~i~l~~~D~~~-~~~a~~~~~~li~~~V~~iiG~~~s~~~ 72 (336)
T cd06339 1 RIALLLPLSGPLASVGQAIRNGFLAALYDLN-------GASIELRVYDTAG-AAGAAAAARQAVAEGADIIVGPLLKENV 72 (336)
T ss_pred CeEEEEcCCCcchHHHHHHHHHHHHHHHhcc-------CCCceEEEEeCCC-cccHHHHHHHHHHcCCCEEEccCCHHHH
Confidence 5899999983 467888999999999999 5789999999999 9999999999998899999999999998
Q ss_pred HHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHh
Q 008205 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLA 190 (574)
Q Consensus 111 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~ 190 (574)
.++++++...+||+|++++..+ +.. .+++||+.+++..+..++++++...|++++++++.++++|....+.+++.++
T Consensus 73 ~a~~~~~~~~~ip~i~~~~~~~-~~~--~~~~f~~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~~g~~~~~~f~~~~~ 149 (336)
T cd06339 73 AALAAAAAELGVPVLALNNDES-VAA--GPNLFYFGLSPEDEARRAAEYARSQGKRRPLVLAPDGAYGQRVADAFRQAWQ 149 (336)
T ss_pred HHHHhhhccCCCCEEEccCCcc-ccC--CCCEEEecCChHHHHHHHHHHHHhcCccceEEEecCChHHHHHHHHHHHHHH
Confidence 8898999999999999754433 222 5899999999999999999998888999999999999999999999999999
Q ss_pred hcCcEEEEEeecCCCCChhhHHHHHHHhhcC---------------------CCeEEEEEeChH-HHHHHHHHHHHCCCC
Q 008205 191 EKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM---------------------MSRILILHTYDI-WGLEVLNAAKHLRMM 248 (574)
Q Consensus 191 ~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~---------------------~~~viil~~~~~-~~~~il~~a~~~gm~ 248 (574)
+.|+++.....++ .+..|+..++.+|+.. +++.|++.+.+. .+..+.+++...+..
T Consensus 150 ~~G~~vv~~~~~~--~~~~d~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~~ 227 (336)
T cd06339 150 QLGGTVVAIESYD--PSPTDLSDAIRRLLGVDDSEQRIAQLKSLESEPRRRQDIDAIDAVALPDGEARLIKPQLLFYYGV 227 (336)
T ss_pred HcCCceeeeEecC--CCHHHHHHHHHHHhccccchhhhhhhhhcccCccccCCCCcEEEEecChhhhhhhcchhhhhccC
Confidence 9999998877776 4778999999999987 899998887776 666677777665431
Q ss_pred CCCeEEEEeCccccccCCCCcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhccCCCCCCCCC-ChhHHHHHHHH
Q 008205 249 ESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGL-NSFGLYAYDTL 327 (574)
Q Consensus 249 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~yDav 327 (574)
..+-.++.++.+...... .......+|++...... ....+|.+.|+++++ ..| +.+++.+|||+
T Consensus 228 ~~~~~~~g~~~~~~~~~~-----~~~g~~~~g~~~~~~~~---~~~~~f~~~y~~~~~-------~~p~~~~~a~~YDa~ 292 (336)
T cd06339 228 PGDVPLYGTSRWYSGTPA-----PLRDPDLNGAWFADPPW---LLDANFELRYRAAYG-------WPPLSRLAALGYDAY 292 (336)
T ss_pred cCCCCEEEeccccCCCCC-----cccCcccCCcEEeCCCc---ccCcchhhhHHHHhc-------CCCCchHHHHHHhHH
Confidence 123347777655432111 11123566766544311 122378888888775 234 67899999999
Q ss_pred HHHHHHHHHHhhcCCCccccCCcccccccCCCcccccccccCchHHHHHHH-HhcccccccccEEEcCCCCC
Q 008205 328 WLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNI-LQVNMTGVTGPIKFTSDRDL 398 (574)
Q Consensus 328 ~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l-~~~~f~G~tG~v~Fd~~G~r 398 (574)
.+++.+++.... +. ++ +...|+|++|+++|+++|+.
T Consensus 293 ~l~~~~~~~~~~------------------------------~~-----al~~~~~~~g~~G~~~f~~~g~~ 329 (336)
T cd06339 293 ALAAALAQLGQG------------------------------DA-----ALTPGAGFSGVTGVLRLDPDGVI 329 (336)
T ss_pred HHHHHHHHcccc------------------------------cc-----ccCCCCccccCcceEEECCCCeE
Confidence 999877764310 11 22 23469999999999999873
No 80
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=99.95 E-value=3.3e-26 Score=225.07 Aligned_cols=280 Identities=26% Similarity=0.345 Sum_probs=228.1
Q ss_pred EEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChHH
Q 008205 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 109 (574)
+||+++|++ +..|.....++++|++++|+++++ +|+++++++.|+++++..+.+.+.+++.+ +|.+||||.++..
T Consensus 1 ~IG~i~p~~g~~~~~~~~~~~~~~~a~~~~n~~~g~-~g~~~~~~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~~~~ 79 (299)
T cd04509 1 KIGVLFPLSGPYAEYGAFRLAGAQLAVEEINAKGGI-PGRKLELVIYDDQSDPARALAAARRLCQQEGVDALVGPVSSGV 79 (299)
T ss_pred CeeEEEcCCCcchhcCHHHHHHHHHHHHHHHhcCCC-CCcEEEEEEecCCCCHHHHHHHHHHHhcccCceEEEcCCCcHH
Confidence 599999998 456788899999999999999865 68999999999999999999999999998 9999999999988
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDK 188 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~ 188 (574)
+..++.++...+||+|++.+..+.+.+ ..+|+++++.|+...++.++++++.+++|+++++++.++.++....+.+++.
T Consensus 80 ~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~iv~~~~~~~~~~~~~~~~~ 159 (299)
T cd04509 80 ALAVAPVAEALKIPLISPGATAPGLTDKKGYPYLFRTGPSDEQQAEALADYIKEYNWKKVAILYDDDSYGRGLLEAFKAA 159 (299)
T ss_pred HHHHHHHHhhCCceEEeccCCCcccccccCCCCEEEecCCcHHHHHHHHHHHHHcCCcEEEEEecCchHHHHHHHHHHHH
Confidence 888999999999999998776665554 4679999999999999999999999999999999999888888889999999
Q ss_pred HhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCC
Q 008205 189 LAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDS 268 (574)
Q Consensus 189 ~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~ 268 (574)
+++.|+++.....++ ....++...++++++.++++|++++....+..+++++++.|+. .++.|+..+.+......
T Consensus 160 ~~~~g~~i~~~~~~~--~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~-~~~~~i~~~~~~~~~~~-- 234 (299)
T cd04509 160 FKKKGGTVVGEEYYP--LGTTDFTSLLQKLKAAKPDVIVLCGSGEDAATILKQAAEAGLT-GGYPILGITLGLSDVLL-- 234 (299)
T ss_pred HHHcCCEEEEEecCC--CCCccHHHHHHHHHhcCCCEEEEcccchHHHHHHHHHHHcCCC-CCCcEEecccccCHHHH--
Confidence 999999987665554 2346788899999888889999988889999999999999998 78999998765432211
Q ss_pred cCChhhhhhccceEEEEEecCCC--hHHHHHH---HHHHHhhccCCCCCCCCCChhHHHHHHHHHH
Q 008205 269 QLHSEKMDDIQGVLTLRMYTQSS--EEKRKFV---TRWRHLTRRNTLNGPIGLNSFGLYAYDTLWL 329 (574)
Q Consensus 269 ~~~~~~~~~~~g~~~~~~~~~~~--~~~~~f~---~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~ 329 (574)
....+...|+++.....+.. +..+.|. ..++..+. ..++.+++.+||++++
T Consensus 235 ---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~yda~~~ 290 (299)
T cd04509 235 ---EAGGEAAEGVLTGTPYFPGDPPPESFFFVRAAAREKKKYE-------DQPDYFAALAYDAVLL 290 (299)
T ss_pred ---HHhHHhhcCcEEeeccCCCCCChHHHHHHhHHHHHHHHhC-------CCCChhhhhhcceeee
Confidence 12335677887776654432 2333333 22332221 3467789999999988
No 81
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.
Probab=99.94 E-value=3.4e-25 Score=219.31 Aligned_cols=289 Identities=15% Similarity=0.122 Sum_probs=219.7
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHHHHHhhccCCccEEe
Q 008205 47 KVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHLVSHIANEFQVPLLS 126 (574)
Q Consensus 47 ~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is 126 (574)
.....++++|+++||+.++++ |++|+++..|. ++|..+++.+.++++++|.+|+|+.+|..+.++.+++...++|+|+
T Consensus 11 ~~~~~ga~lAveeiNaaGGv~-G~~ielv~~D~-~~p~~a~~~a~~Li~~~V~~vvG~~~S~~~~Av~~~a~~~~vp~i~ 88 (347)
T TIGR03863 11 DRGLDGARLAIEDNNTTGRFL-GQTFTLDEVAV-RTPEDLVAALKALLAQGVRFFVLDLPAAALLALADAAKAKGALLFN 88 (347)
T ss_pred chHHHHHHHHHHHHHhhCCcC-CceEEEEEccC-CCHHHHHHHHHHHHHCCCCEEEecCChHHHHHHHHHHHhCCcEEEe
Confidence 467899999999999999997 78999999975 6899999999999988999999999999999999999999999999
Q ss_pred cccCCCCcCC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCC
Q 008205 127 FAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPK 205 (574)
Q Consensus 127 ~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~ 205 (574)
++++++.++. ..++|+||+.|++..++.++++++...+++++++|+.+++||....+.+++.+++.|++|+..+.++..
T Consensus 89 ~~a~~~~lt~~~c~~~~Fr~~~~~~~~~~ala~~~~~~g~kkvaii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~ 168 (347)
T TIGR03863 89 AGAPDDALRGADCRANLLHTLPSRAMLADALAQYLAAKRWRRILLIQGPLPADALYADAFRRSAKRFGAKIVAERPFTFS 168 (347)
T ss_pred CCCCChHHhCCCCCCCEEEecCChHhHHHHHHHHHHHcCCCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEEeEEeccC
Confidence 9888887876 347899999999999999999998777999999999999999999999999999999999888777643
Q ss_pred CC--hhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCcCChhhhhhccceEE
Q 008205 206 GS--RNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLT 283 (574)
Q Consensus 206 ~~--~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 283 (574)
.+ ..++.......+.+++++|++.....+....+... .++.. . . ....|+..
T Consensus 169 ~~~~~~d~s~~~~~~~~s~pDvv~~~~~~~~~~~~~~~~----------~~~~~----~---~---------~g~~G~~~ 222 (347)
T TIGR03863 169 GDPRRTDQSEVPLFTQGADYDVVVVADEAGEFARYLPYA----------TWLPR----P---V---------AGSAGLVP 222 (347)
T ss_pred CchhhhhcccCceeecCCCCCEEEEecchhhHhhhcccc----------ccccc----c---c---------ccccCccc
Confidence 11 22333222223347899998864443321111000 00000 0 0 01112221
Q ss_pred EEE-ecCCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCccccCCcccccccCCCccc
Q 008205 284 LRM-YTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRF 362 (574)
Q Consensus 284 ~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c 362 (574)
... .....+..++|.++|+++++ ..|+..++.+||++++++.|++++.+.
T Consensus 223 ~~~~~~~~~~~~~~f~~~f~~~~g-------~~p~~~~a~aY~av~~~a~Ai~~AGs~---------------------- 273 (347)
T TIGR03863 223 TAWHRAWERWGATQLQSRFEKLAG-------RPMTELDYAAWLAVRAVGEAVTRTRSA---------------------- 273 (347)
T ss_pred cccCCcccchhHHHHHHHHHHHhC-------CCCChHHHHHHHHHHHHHHHHHHhcCC----------------------
Confidence 111 11233567899999998875 234566788999999999999987321
Q ss_pred ccccccCchHHHHHHHHhccc--ccccc-cEEEcC-CCCCC
Q 008205 363 SSVSIFNGGKMLLDNILQVNM--TGVTG-PIKFTS-DRDLI 399 (574)
Q Consensus 363 ~~~~~~~~g~~l~~~l~~~~f--~G~tG-~v~Fd~-~G~r~ 399 (574)
++..+.++|+++++ .+..| +++|.+ +++..
T Consensus 274 -------d~~aV~~aL~~~~~~~~~~~g~~~~~R~~Dhq~~ 307 (347)
T TIGR03863 274 -------DPATLRDYLLSDEFELAGFKGRPLSFRPWDGQLR 307 (347)
T ss_pred -------CHHHHHHHHcCCCceecccCCCcceeeCCCcccc
Confidence 58999999999887 47887 699986 66644
No 82
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=99.94 E-value=1.2e-24 Score=218.19 Aligned_cols=309 Identities=14% Similarity=0.079 Sum_probs=242.0
Q ss_pred EEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChHH
Q 008205 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 109 (574)
+||+++|++ +..|.....++++|++++|+.+++ .|+++++++.|+++++..+.+.+.+++++ +|.+|||+.++..
T Consensus 1 ~IGv~~p~sG~~a~~g~~~~~g~~~a~~~~N~~Ggi-~G~~i~lv~~D~~~~~~~~~~~~~~li~~~~V~~iig~~~s~~ 79 (341)
T cd06341 1 KIGLLYPDTGVAAVSFPGARAGADAAAGYANAAGGI-AGRPIEYVWCDDQGDPASAAACARDLVEDDKVVAVVGGSSGAG 79 (341)
T ss_pred CeEEEecCCCchhhccHHHHHHHHHHHHHHHhcCCc-CCceEEEEEecCCCChhHHHHHHHHHHHhcCceEEEecccccc
Confidence 599999998 457889999999999999999988 58999999999999999999999999988 9999999998877
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC-CCcchHHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD-HGRNGIAALGDK 188 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~-~g~~~~~~l~~~ 188 (574)
...+ +.+...++|+|++.+.++.+.. .++.|++.+++..+..++++++...+.+++++++.++. ++......+++.
T Consensus 80 ~~~~-~~~~~~~ip~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~i~~~~~~~g~~~~~~~~~~ 156 (341)
T cd06341 80 GSAL-PYLAGAGIPVIGGAGTSAWELT--SPNSFPFSGGTPASLTTWGDFAKDQGGTRAVALVTALSAAVSAAAALLARS 156 (341)
T ss_pred hhHH-HHHhhcCCceecCCCCCchhhc--CCCeEEecCCCcchhHHHHHHHHHcCCcEEEEEEeCCcHHHHHHHHHHHHH
Confidence 6665 8888999999997665554432 47788999888889999999998889999999987665 888899999999
Q ss_pred HhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCC
Q 008205 189 LAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDS 268 (574)
Q Consensus 189 ~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~ 268 (574)
+++.|+.+.....++ ....|+..++.++++.++++|++......+..++++++++|+..+ .+........ ...
T Consensus 157 ~~~~G~~v~~~~~~~--~~~~d~~~~~~~i~~~~pdaV~~~~~~~~a~~~~~~~~~~G~~~~---~~~~~~~~~~-~~~- 229 (341)
T cd06341 157 LAAAGVSVAGIVVIT--ATAPDPTPQAQQAAAAGADAIITVLDAAVCASVLKAVRAAGLTPK---VVLSGTCYDP-ALL- 229 (341)
T ss_pred HHHcCCccccccccC--CCCCCHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHHcCCCCC---EEEecCCCCH-HHH-
Confidence 999999887655554 345789999999999999999998888899999999999998665 2222211110 000
Q ss_pred cCChhhhhhccceEEEEEecC---CChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 008205 269 QLHSEKMDDIQGVLTLRMYTQ---SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNIS 345 (574)
Q Consensus 269 ~~~~~~~~~~~g~~~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~ 345 (574)
.......+|++....+.+ ..+..+.|.+.+++.... ....++.++..+||+++++++|++++...
T Consensus 230 ---~~~g~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~yda~~~~~~a~~~ag~~----- 297 (341)
T cd06341 230 ---AAPGPALAGVYIAVFYRPFESGTPAVALYLAAMARYAPQ----LDPPEQGFALIGYIAADLFLRGLSGAGGC----- 297 (341)
T ss_pred ---HhcCcccCceEEEeeeccccCCCHHHHHHHHHHHHhCCC----CCCCcchHHHHHHHHHHHHHHHHHhcCCC-----
Confidence 122246788777766554 456778888766654321 11246778899999999999999986211
Q ss_pred ccCCcccccccCCCcccccccccCchHH-HHHHHHhcccccccc
Q 008205 346 FSEDSKLSELSRGDMRFSSVSIFNGGKM-LLDNILQVNMTGVTG 388 (574)
Q Consensus 346 ~~~~~~~~~~~~~~~~c~~~~~~~~g~~-l~~~l~~~~f~G~tG 388 (574)
.++.. ++++|++++.....|
T Consensus 298 -----------------------~~~~~~v~~al~~~~~~~~~g 318 (341)
T cd06341 298 -----------------------PTRASQFLRALRAVTDYDAGG 318 (341)
T ss_pred -----------------------CChHHHHHHHhhcCCCCCCCC
Confidence 03566 999999997665545
No 83
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=99.94 E-value=1.2e-24 Score=215.24 Aligned_cols=279 Identities=20% Similarity=0.242 Sum_probs=221.1
Q ss_pred EEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChHH
Q 008205 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 109 (574)
+||+++|++ +..|.....++++|+++||+ +++ +|+++++++.|+++++..+.+.+.+++.+ +|.+|||+.++..
T Consensus 1 ~IG~~~~lsG~~~~~g~~~~~g~~~a~~~iN~-ggi-~g~~i~l~~~d~~~~~~~a~~~~~~li~~~~v~~vig~~~s~~ 78 (312)
T cd06333 1 KIGAILSLTGPAASLGIPEKKTLELLPDEINA-GGI-GGEKVELIVLDDGSDPTKAVTNARKLIEEDKVDAIIGPSTTPA 78 (312)
T ss_pred CeeEEeecCCcchhhCHHHHHHHHHHHHHHhc-CCc-CCeEEEEEEecCCCCHHHHHHHHHHHHhhCCeEEEECCCCCHH
Confidence 599999998 55678889999999999999 777 58999999999999999999999999975 9999999988877
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKL 189 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~ 189 (574)
+..+.+++...++|+|++.++.+.+. ...+++||+.|++...+.++++++...||+++++++.++.++....+.+++.+
T Consensus 79 ~~~~~~~~~~~~vP~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vail~~~~~~~~~~~~~~~~~~ 157 (312)
T cd06333 79 TMAVAPVAEEAKTPMISLAPAAAIVE-PKRKWVFKTPQNDRLMAEAILADMKKRGVKTVAFIGFSDAYGESGLKELKALA 157 (312)
T ss_pred HHHHHHHHHhcCCCEEEccCCccccC-CCCCcEEEcCCCcHHHHHHHHHHHHHcCCCEEEEEecCcHHHHHHHHHHHHHH
Confidence 77788899999999999866544332 34578999999999999999999999999999999988888888889999999
Q ss_pred hhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCc
Q 008205 190 AEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQ 269 (574)
Q Consensus 190 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~ 269 (574)
++.|+++.....++. ...++...+.+++..++++|++......+..+++++++.|+..+ ++.++..... +..
T Consensus 158 ~~~G~~v~~~~~~~~--~~~d~~~~~~~l~~~~pdaIi~~~~~~~~~~~~~~l~~~g~~~p---~~~~~~~~~~-~~~-- 229 (312)
T cd06333 158 PKYGIEVVADERYGR--TDTSVTAQLLKIRAARPDAVLIWGSGTPAALPAKNLRERGYKGP---IYQTHGVASP-DFL-- 229 (312)
T ss_pred HHcCCEEEEEEeeCC--CCcCHHHHHHHHHhCCCCEEEEecCCcHHHHHHHHHHHcCCCCC---EEeecCcCcH-HHH--
Confidence 999999876655653 34578888888888889999988877778889999999997654 4433322110 110
Q ss_pred CChhhhhhccceEEEEEe------cC----CChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHH
Q 008205 270 LHSEKMDDIQGVLTLRMY------TQ----SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLA 331 (574)
Q Consensus 270 ~~~~~~~~~~g~~~~~~~------~~----~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a 331 (574)
.......+|++....+ .| ..+..++|.++|+++++. ..+..+++..||++++++
T Consensus 230 --~~~g~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~f~~~~~~~~g~------~~~~~~~~~~Yda~~~~~ 293 (312)
T cd06333 230 --RLAGKAAEGAILPAGPVLVADQLPDSDPQKKVALDFVKAYEAKYGA------GSVSTFGGHAYDALLLLA 293 (312)
T ss_pred --HHhhHhhcCcEeecccceeeeeCCCCCcchHHHHHHHHHHHHHhCC------CCCCchhHHHHHHHHHHH
Confidence 1222456777654321 12 235689999999888752 125667899999999999
No 84
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=99.93 E-value=1.1e-23 Score=206.93 Aligned_cols=280 Identities=25% Similarity=0.295 Sum_probs=227.2
Q ss_pred EEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHH
Q 008205 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIA 110 (574)
Q Consensus 34 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~ 110 (574)
+||+++|.+ +..|.....++++|++++|+.+++ +|++++++++|+++++..+.+.+++++++++.+||||.++..+
T Consensus 1 ~ig~~~p~sg~~~~~~~~~~~g~~~a~~~~n~~gg~-~g~~v~~~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~~~~~ 79 (298)
T cd06268 1 KIGVLLPLSGPLAALGEPVRNGAELAVEEINAAGGI-LGRKIELVVEDTQGDPEAAAAAARELVDDGVDAVIGPLSSGVA 79 (298)
T ss_pred CeeeeecCcCchhhcChhHHHHHHHHHHHHHhcCCC-CCeEEEEEEecCCCCHHHHHHHHHHHHhCCceEEEcCCcchhH
Confidence 589999997 567788999999999999999876 6899999999999999999999999999999999999998888
Q ss_pred HHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcC-CeEEEEEEEcCCCCcchHHHHHHHH
Q 008205 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFG-WRNVIALYVDDDHGRNGIAALGDKL 189 (574)
Q Consensus 111 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~-W~~v~ii~~~~~~g~~~~~~l~~~~ 189 (574)
..+.+++...+||+|++.+..+.+.+..++++|++.|++..+..++++++...+ |+++++++.+++++....+.+++.+
T Consensus 80 ~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~ 159 (298)
T cd06268 80 LAAAPVAEEAGVPLISPGATSPALTGKGNPYVFRTAPSDAQQAAALADYLAEKGKVKKVAIIYDDYAYGRGLAAAFREAL 159 (298)
T ss_pred HhhHHHHHhCCCcEEccCCCCcccccCCCceEEEcccCcHHHHHHHHHHHHHhcCCCEEEEEEcCCchhHHHHHHHHHHH
Confidence 888999999999999987766555433578999999999999999999998888 9999999998888888999999999
Q ss_pred hhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCc
Q 008205 190 AEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQ 269 (574)
Q Consensus 190 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~ 269 (574)
++.|+++.....++ ....++...+.+++..++++|++.+.+..+..+++++++.|+ +..|+..+.+......
T Consensus 160 ~~~g~~i~~~~~~~--~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~--- 231 (298)
T cd06268 160 KKLGGEVVAEETYP--PGATDFSPLIAKLKAAGPDAVFLAGYGGDAALFLKQAREAGL---KVPIVGGDGAAAPALL--- 231 (298)
T ss_pred HHcCCEEEEEeccC--CCCccHHHHHHHHHhcCCCEEEEccccchHHHHHHHHHHcCC---CCcEEecCccCCHHHH---
Confidence 99999887765554 234678889999998888999988888889999999999987 4457776654332111
Q ss_pred CChhhhhhccceEEEEEecCC--ChHHHHHH-HHHHHhhccCCCCCCCCCChhHHHHHHHHHHHH
Q 008205 270 LHSEKMDDIQGVLTLRMYTQS--SEEKRKFV-TRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLA 331 (574)
Q Consensus 270 ~~~~~~~~~~g~~~~~~~~~~--~~~~~~f~-~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a 331 (574)
........|+++..++.+. .+....|. +.|++.++ ..++.++...||++++++
T Consensus 232 --~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~y~~~~~~~ 287 (298)
T cd06268 232 --ELAGDAAEGVLGTTPYAPDDDDPAAAAFFQKAFKAKYG-------RPPDSYAAAAYDAVRLLA 287 (298)
T ss_pred --HhhhHhhCCcEEeccCCCCCCChhhhHHHHHHHHHHhC-------CCcccchHHHHHHHHHHc
Confidence 1122456788777665443 23344554 66666553 345677899999999998
No 85
>PF10613 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- and glycine-binding site; InterPro: IPR019594 This entry, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and binds L-glutamate and glycine [, ]. It is found in association with IPR001320 from INTERPRO. ; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 4E0W_A 3S9E_A 3QXM_B 2F34_A 3C34_B 3S2V_A 3GBB_B 2F36_D 4E0X_A 1TXF_A ....
Probab=99.70 E-value=7.5e-18 Score=118.82 Aligned_cols=49 Identities=24% Similarity=0.537 Sum_probs=43.3
Q ss_pred cCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCC-----CCCChHHHHHHhhh
Q 008205 489 GKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGH-----NSPKRFDLLRLVSE 539 (574)
Q Consensus 489 ~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~-----~~~~~~gli~~l~~ 539 (574)
..|+.||+|||||||++||+.|+|+ |++++++||+ +||+||||||+|++
T Consensus 12 ~~g~~~~eGyciDll~~la~~l~F~--y~i~~~~Dg~yG~~~~~g~W~GmiGeli~ 65 (65)
T PF10613_consen 12 LTGNDRYEGYCIDLLEELAEELNFT--YEIYLVPDGKYGSKNPNGSWNGMIGELIR 65 (65)
T ss_dssp SBGGGGEESHHHHHHHHHHHHHT-E--EEEEE-TTS--EEBETTSEBEHHHHHHHT
T ss_pred cCCCccEEEEHHHHHHHHHHHcCCe--EEEEECCCCCCcCcCCCCcCcCHHHHhcC
Confidence 4689999999999999999999999 9999999987 88999999999975
No 86
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=99.65 E-value=4.4e-14 Score=135.94 Aligned_cols=215 Identities=21% Similarity=0.281 Sum_probs=170.2
Q ss_pred EEEEEeccC--CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHH
Q 008205 34 NIGAVFALN--STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~--~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~ 111 (574)
+||+++|.+ ...+.....+++.+++++ |..+++.+.++++++....+.+.++..+++.++||+.++....
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~ 72 (269)
T cd01391 1 KIGVLLPLSGSAPFGAQLLAGIELAAEEI--------GRGLEVILADSQSDPERALEALRDLIQQGVDGIIGPPSSSSAL 72 (269)
T ss_pred CceEEeecCCCcHHHHHHHHHHHHHHHHh--------CCceEEEEecCCCCHHHHHHHHHHHHHcCCCEEEecCCCHHHH
Confidence 589999987 445566677888888776 4567889999999887788888888888999999998887766
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcC-CCCcchHHHHHHHHh
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD-DHGRNGIAALGDKLA 190 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~-~~g~~~~~~l~~~~~ 190 (574)
.+...+...++|+|++....+... .+++++++.|+....+.++++++.+++|+++++++.+. ..+....+.+++.++
T Consensus 73 ~~~~~~~~~~ip~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~ 150 (269)
T cd01391 73 AVVELAAAAGIPVVSLDATAPDLT--GYPYVFRVGPDNEQAGEAAAEYLAEKGWKRVALIYGDDGAYGRERLEGFKAALK 150 (269)
T ss_pred HHHHHHHHcCCcEEEecCCCCccC--CCceEEEEcCCcHHHHHHHHHHHHHhCCceEEEEecCCcchhhHHHHHHHHHHH
Confidence 578888999999999876654433 46889999999999999999999999999999999877 566777889999999
Q ss_pred hcCcEEEEEeecCCCCChhhHHHHHHHhhcC-CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCcc
Q 008205 191 EKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM-MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWL 260 (574)
Q Consensus 191 ~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~-~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~ 260 (574)
+.++++......+. ....++....+.+++. ++++|++.++ ..+..+++++.+.|+...++.|+..+.+
T Consensus 151 ~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~i~~~~~-~~a~~~~~~~~~~g~~~~~~~ii~~~~~ 219 (269)
T cd01391 151 KAGIEVVAIEYGDL-DTEKGFQALLQLLKAAPKPDAIFACND-EMAAGALKAAREAGLTPGDISIIGFDGS 219 (269)
T ss_pred hcCcEEEeccccCC-CccccHHHHHHHHhcCCCCCEEEEcCc-hHHHHHHHHHHHcCCCCCCCEEEecccc
Confidence 88876654333321 1224677777777766 6787777766 8899999999999987456777776654
No 87
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=99.36 E-value=7.9e-11 Score=122.65 Aligned_cols=308 Identities=14% Similarity=0.128 Sum_probs=161.0
Q ss_pred CeEEEEEEeccCCc---cchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCCh
Q 008205 31 PVLNIGAVFALNST---IGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFS 107 (574)
Q Consensus 31 ~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 107 (574)
.+-+|++++|++.. .|..+..||..|. +... +....+.++|+..++..+ ...+.+.+|...||||...
T Consensus 218 ~~~~IavLLPlsG~~a~~~~aI~~G~~aA~---~~~~----~~~~~l~~~Dt~~~~~~~--~~~~a~~~ga~~ViGPL~k 288 (536)
T PF04348_consen 218 PPQRIAVLLPLSGRLARAGQAIRDGFLAAY---YADA----DSRPELRFYDTNADSADA--LYQQAVADGADFVIGPLLK 288 (536)
T ss_dssp ----EEEEE--SSTTHHHHHHHHHHHHHHH------T----T--S-EEEEETTTS-HHH--HHHHHHHTT--EEE---SH
T ss_pred CccCEEEEeCCCCchhHHHHHHHHHHHHhh---cccc----cCCCceEEecCCCCCHHH--HHHHHHHcCCCEEEcCCCH
Confidence 34579999999843 3556677777777 1111 234578889987764332 3456667899999999999
Q ss_pred HHHHHHHHhhcc--CCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHH
Q 008205 108 VIAHLVSHIANE--FQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAAL 185 (574)
Q Consensus 108 ~~~~~va~~~~~--~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l 185 (574)
.....++..-.. ..||++.....+.. .....-|.|.+. .++.+..+++.+..-|+++..|++.++++|....+.|
T Consensus 289 ~~V~~l~~~~~~~~~~vp~LaLN~~~~~-~~~~~l~~f~Ls--pEdEA~q~A~~a~~~g~~~alvl~p~~~~g~R~~~aF 365 (536)
T PF04348_consen 289 SNVEALAQLPQLQAQPVPVLALNQPDNS-QAPPNLYQFGLS--PEDEARQAAQKAFQDGYRRALVLAPQNAWGQRMAEAF 365 (536)
T ss_dssp HHHHHHHH-GG-GGTT-EEEES---TT-----TTEEE------HHHHHHHHHHHHHHTT--S-EEEEESSHHHHHHHHHH
T ss_pred HHHHHHHhcCcccccCCceeeccCCCcc-cCccceEEEeCC--cHHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHH
Confidence 888777765432 48999997655433 111112445554 5666899999999999999999999999999999999
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccC
Q 008205 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILD 265 (574)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~ 265 (574)
.+.....|..+.....+. ...++...++.-...+.+.|++.+.+.+++.|--...-. ....--.+.++...+..
T Consensus 366 ~~~W~~~gg~~~~~~~~~---~~~~~~~~i~~r~r~d~D~ifl~a~~~~ar~ikP~l~~~--~a~~lPvyatS~~~~g~- 439 (536)
T PF04348_consen 366 NQQWQALGGQVAEVSYYG---SPADLQAAIQPRRRQDIDAIFLVANPEQARLIKPQLDFH--FAGDLPVYATSRSYSGS- 439 (536)
T ss_dssp HHHHHHHHSS--EEEEES---STTHHHHHHHHS--TT--EEEE---HHHHHHHHHHHTT---T-TT-EEEE-GGG--HH-
T ss_pred HHHHHHcCCCceeeEecC---CHHHHHHHHhhcCCCCCCEEEEeCCHHHHHHHhhhcccc--cCCCCCEEEeccccCCC-
Confidence 999999887765555554 346788888866567889999999999888776555432 12222233333221110
Q ss_pred CCCcCChhhhhhccceEEEEEec---CCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCC
Q 008205 266 TDSQLHSEKMDDIQGVLTLRMYT---QSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGG 342 (574)
Q Consensus 266 ~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~ 342 (574)
.+......+.|+.+....- +..+....+.+.|.... ....-..++.|||..++.+= .
T Consensus 440 ----~~~~~~~dL~gv~f~d~Pwll~~~~~~~~~~~~~~~~~~--------~~~~RL~AlG~DA~~L~~~l-~------- 499 (536)
T PF04348_consen 440 ----PNPSQDRDLNGVRFSDMPWLLDPNSPLRQQLAALWPNAS--------NSLQRLYALGIDAYRLAPRL-P------- 499 (536)
T ss_dssp ----T-HHHHHHTTT-EEEE-GGGG---SHHHHHHH-HHTTT---------HHHHHHHHHHHHHHHHHHTH-H-------
T ss_pred ----CCcchhhhhcCCEEeccccccCCCchHHHHHHhhccCCc--------cHHHHHHHHHHHHHHHHHHH-H-------
Confidence 1133446888988876532 23343444444442110 01122345677776655321 1
Q ss_pred CccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEe
Q 008205 343 NISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINV 408 (574)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~ 408 (574)
-++.+....+.|.||.+++|++|. +.-.+...++
T Consensus 500 -------------------------------~l~~~~~~~~~G~TG~L~~~~~g~-i~R~l~wa~f 533 (536)
T PF04348_consen 500 -------------------------------QLRQFPGYRLDGLTGQLSLDEDGR-IERQLSWAQF 533 (536)
T ss_dssp -------------------------------HHHHSTT--EEETTEEEEE-TT-B-EEEE-EEEEE
T ss_pred -------------------------------HHhhCCCCcccCCceeEEECCCCe-EEEeecceee
Confidence 122223347899999999999884 4333443333
No 88
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=98.87 E-value=2.4e-07 Score=88.91 Aligned_cols=205 Identities=12% Similarity=0.065 Sum_probs=137.6
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 112 (574)
+||+++|.+ .........+++.+.++ . |+ ++.+.+...++....+.+.+++++++.++|+.........
T Consensus 1 ~ig~v~~~~~~~~~~~~~~g~~~~~~~----~----g~--~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~ 70 (264)
T cd01537 1 TIGVLVPDLDNPFFAQVLKGIEEAAKA----A----GY--QVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAPT 70 (264)
T ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHH----c----CC--eEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCcchh
Confidence 489999885 33444556666666665 1 33 5566777777766677777888889999888665544433
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHHHHHh
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLA 190 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~~ 190 (574)
....+...++|+|......+. .++++++.+.+...+..+++.+...+-++++++..+.. ++....+.+++.++
T Consensus 71 ~~~~l~~~~ip~v~~~~~~~~-----~~~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~~~~~~~~~~ 145 (264)
T cd01537 71 IVKLARKAGIPVVLVDRDIPD-----GDRVPSVGSDNEQAGYLAGEHLAEKGHRRIALLAGPLGSSTARERVAGFKDALK 145 (264)
T ss_pred HHHHhhhcCCCEEEeccCCCC-----CcccceEecCcHHHHHHHHHHHHHhcCCcEEEEECCCCCCcHHHHHHHHHHHHH
Confidence 567778899999997655432 24566777788888899999988888999999986554 45566788888888
Q ss_pred hcC-cEEEEEeecCCCCChhhHHHHHHHhhcCC--CeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 191 EKR-CRLSHKVPLSPKGSRNQIIDTLLTVSSMM--SRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 191 ~~g-~~v~~~~~~~~~~~~~~~~~~l~~ik~~~--~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
+.+ ..+....... .+..+....++++.+.+ .++|+. .+...+..+++++.+.|+..+..+-|+
T Consensus 146 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~i~~-~~~~~a~~~~~~~~~~g~~i~~~i~i~ 211 (264)
T cd01537 146 EAGPIEIVLVQEGD--WDAEKGYQAAEELLTAHPDPTAIFA-ANDDMALGALRALREAGLRVPDDISVI 211 (264)
T ss_pred HcCCcChhhhccCC--CCHHHHHHHHHHHHhcCCCCCEEEE-cCcHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 777 3332221111 34455666777766665 444443 344567778899999987644444444
No 89
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=98.74 E-value=3e-06 Score=81.51 Aligned_cols=205 Identities=14% Similarity=0.099 Sum_probs=132.7
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCC-hHHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQF-SVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~-s~~~~ 111 (574)
+||++.|.. .........+++.+.++. | +.+.+.++..++....+.+.+++.+++.+||+... .....
T Consensus 1 ~ig~i~p~~~~~~~~~~~~~~~~~a~~~--------g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~~~~~~ 70 (267)
T cd01536 1 KIGLVVPSLNNPFWQAMNKGAEAAAKEL--------G--VELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPVDSAALT 70 (267)
T ss_pred CEEEEeccccCHHHHHHHHHHHHHHHhc--------C--ceEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhHH
Confidence 589999874 334445666776666651 3 35566667667777777777888889998876433 33333
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEcCC--CCcchHHHHHH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVDDD--HGRNGIAALGD 187 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~--~W~~v~ii~~~~~--~g~~~~~~l~~ 187 (574)
.....+...++|+|......+. ...+..+.+.+...+..+++.+... |-+++++++.... ++....+.+++
T Consensus 71 ~~~~~l~~~~ip~V~~~~~~~~-----~~~~~~v~~d~~~~~~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~r~~gf~~ 145 (267)
T cd01536 71 PALKKANAAGIPVVTVDSDIDG-----GNRLAYVGTDNYEAGRLAGEYLAKLLGGKGKVAIIEGPPGSSNAQERVKGFRD 145 (267)
T ss_pred HHHHHHHHCCCcEEEecCCCCc-----cceeEEEecCHHHHHHHHHHHHHHHhCCCceEEEEEcccccchHHHHHHHHHH
Confidence 3445566789999987543321 1344566777777788888887666 8899999986543 56677888999
Q ss_pred HHhhcC-cEEEEEeecCCCCChhhHHHHHHHhhcCCCeE-EEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 188 KLAEKR-CRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRI-LILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 188 ~~~~~g-~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~v-iil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
.+++.+ .++....... .+..+..+.+.++.+..++. +|+.++...+..+++++++.|+. .+...+.
T Consensus 146 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~a~~~~~~l~~~g~~-~~i~ivg 213 (267)
T cd01536 146 ALKEYPDIEIVAVQDGN--WDREKALQAMEDLLQANPDIDAIFAANDSMALGAVAALKAAGRK-GDVKIVG 213 (267)
T ss_pred HHHhCCCcEEEEEecCC--CcHHHHHHHHHHHHHhCCCccEEEEecCCchHHHHHHHHhcCCC-CCceEEe
Confidence 998884 6654332222 23345556667765444333 34444556777899999999875 3443443
No 90
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=98.69 E-value=2.1e-06 Score=82.30 Aligned_cols=205 Identities=13% Similarity=0.059 Sum_probs=131.8
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 112 (574)
+||++.|.. ..+......+++.+.++. |++ +.+.+...++.+..+.+.+++++++.+|+....+.....
T Consensus 1 ~i~~v~~~~~~~~~~~~~~g~~~~~~~~--------g~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~~ 70 (264)
T cd06267 1 TIGVIVPDISNPFFAELLRGIEEAAREA--------GYS--VLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLDDEL 70 (264)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHc--------CCE--EEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcchHH
Confidence 478999885 333344555555555541 344 445666677777777888888889998887555544444
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHHHHHh
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLA 190 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~~ 190 (574)
...+...+||+|......+. +.+..+.++....+..+++.+...|.+++++++.+.. ++....+.+++.++
T Consensus 71 -~~~~~~~~ipvv~~~~~~~~------~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~g~~~~~~ 143 (264)
T cd06267 71 -LEELAALGIPVVLVDRPLDG------LGVDSVGIDNRAGAYLAVEHLIELGHRRIAFIGGPPDLSTARERLEGYREALE 143 (264)
T ss_pred -HHHHHHcCCCEEEecccccC------CCCCEEeeccHHHHHHHHHHHHHCCCceEEEecCCCccchHHHHHHHHHHHHH
Confidence 56678899999997554321 3445566667777888888887779999999986643 55667788888888
Q ss_pred hcCcEEEEEeecCCCCChhhHHHHHHHhhcCC--CeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 191 EKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMM--SRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 191 ~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~--~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
+.+..+..........+..+....++++.... .+.|+. .+...+..+++++++.|+..++.+.|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~-~~~~~a~~~~~al~~~g~~~~~~i~i~ 210 (264)
T cd06267 144 EAGIPLDEELIVEGDFSEESGYEAARELLASGERPTAIFA-ANDLMAIGALRALRELGLRVPEDVSVV 210 (264)
T ss_pred HcCCCCCcceEEecccchhhHHHHHHHHHhcCCCCcEEEE-cCcHHHHHHHHHHHHhCCCCCCceEEE
Confidence 87743322111221123345556666665554 454443 355667788888889887544444443
No 91
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=98.68 E-value=3.5e-06 Score=81.47 Aligned_cols=201 Identities=13% Similarity=0.028 Sum_probs=130.7
Q ss_pred EEEEEeccCCc-cchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCCh-HHHH
Q 008205 34 NIGAVFALNST-IGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFS-VIAH 111 (574)
Q Consensus 34 ~IG~l~~~~~~-~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s-~~~~ 111 (574)
|||+++|.... +-.....++..+.++. + ..|+++++.+.|+..++....+...+++.+++.+||....+ ....
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~~----~-~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~ 75 (272)
T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAKEL----K-KAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPASPTALN 75 (272)
T ss_pred CeEEeccccCChHHHHHHHHHHHHHHhh----h-ccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhH
Confidence 58999876421 2123444554444431 1 12567788889888888887888888888899998874433 3233
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEcC--CCCcchHHHHHH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVDD--DHGRNGIAALGD 187 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~--~W~~v~ii~~~~--~~g~~~~~~l~~ 187 (574)
.....+...+||+|...... .. +.+.++.+++...+..+++.+... |-++++++.... ..+....+.+++
T Consensus 76 ~~l~~~~~~~iPvv~~~~~~---~~---~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~g~~~ 149 (272)
T cd06300 76 PVIEEACEAGIPVVSFDGTV---TT---PCAYNVNEDQAEFGKQGAEWLVKELGGKGNVLVVRGLAGHPVDEDRYAGAKE 149 (272)
T ss_pred HHHHHHHHCCCeEEEEecCC---CC---CceeEecCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCcchHHHHHHHHH
Confidence 34455667899999875432 11 346778888888888888877665 788999997432 334566788899
Q ss_pred HHhhcC-cEEEEEeecCCCCChhhHHHHHHHhhcCCC--eEEEEEeChHHHHHHHHHHHHCCCCC
Q 008205 188 KLAEKR-CRLSHKVPLSPKGSRNQIIDTLLTVSSMMS--RILILHTYDIWGLEVLNAAKHLRMME 249 (574)
Q Consensus 188 ~~~~~g-~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~--~viil~~~~~~~~~il~~a~~~gm~~ 249 (574)
.+.+.+ +.+... .....+..+..+.++++.+..+ +.|+.. +.. +..+++++++.|+..
T Consensus 150 a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~-~d~-A~g~~~al~~~g~~~ 210 (272)
T cd06300 150 VLKEYPGIKIVGE--VYGDWDQAVAQKAVADFLASNPDVDGIWTQ-GGD-AVGAVQAFEQAGRDI 210 (272)
T ss_pred HHHHCCCcEEEee--cCCCCCHHHHHHHHHHHHHhCCCcCEEEec-CCC-cHHHHHHHHHcCCCC
Confidence 998887 765432 2112333455666777655444 433333 334 888999999999743
No 92
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=98.51 E-value=0.0001 Score=69.45 Aligned_cols=204 Identities=15% Similarity=0.159 Sum_probs=134.4
Q ss_pred CCCCeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCc-EEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCC
Q 008205 28 TIPPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGT-KLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQF 106 (574)
Q Consensus 28 ~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~-~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~ 106 (574)
...+.++||+........-.....+++-|+.+. |+ .+++.+...++|+..+.+.++++..++..+|++-..
T Consensus 26 ~~~~~~~VaI~~~veHpaLd~~~~G~~~aLk~~--------G~~n~~i~~~na~~~~~~a~~iarql~~~~~dviv~i~t 97 (322)
T COG2984 26 AAADQITVAITQFVEHPALDAAREGVKEALKDA--------GYKNVKIDYQNAQGDLGTAAQIARQLVGDKPDVIVAIAT 97 (322)
T ss_pred ccccceeEEEEEeecchhHHHHHHHHHHHHHhc--------CccCeEEEeecCCCChHHHHHHHHHhhcCCCcEEEecCC
Confidence 345667788877766443345667777777664 33 678888888899999999999999888888887444
Q ss_pred hHHHHHHHHhhccCCccEEecccCCCC---cCCC-CCCceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEcCC-CCc
Q 008205 107 SVIAHLVSHIANEFQVPLLSFAATDPS---LSSL-QYPFFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVDDD-HGR 179 (574)
Q Consensus 107 s~~~~~va~~~~~~~iP~Is~~~~~~~---ls~~-~~~~~~r~~ps~~~~~~ai~~ll~~~--~W~~v~ii~~~~~-~g~ 179 (574)
.. +..+.+-. .+||+|-.+.+++. |.+. .-|---=+.-+|..-...-.+++++. +-++++++|..++ ...
T Consensus 98 p~-Aq~~~s~~--~~iPVV~aavtd~v~a~Lv~~~~~pg~NvTGvsD~~~v~q~i~lik~~~Pnak~Igv~Y~p~E~ns~ 174 (322)
T COG2984 98 PA-AQALVSAT--KTIPVVFAAVTDPVGAKLVKSLEQPGGNVTGVSDLLPVAQQIELIKALLPNAKSIGVLYNPGEANSV 174 (322)
T ss_pred HH-HHHHHHhc--CCCCEEEEccCchhhccCCccccCCCCceeecCCcchHHHHHHHHHHhCCCCeeEEEEeCCCCcccH
Confidence 43 33333322 23999987776652 2211 11222223445554455666677664 8899999997665 567
Q ss_pred chHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChH---HHHHHHHHHHHCCC
Q 008205 180 NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI---WGLEVLNAAKHLRM 247 (574)
Q Consensus 180 ~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~---~~~~il~~a~~~gm 247 (574)
...+.++..++..|+++.... ++ +..|....++.+. .+.++|+..++.. ....++..|.+.+.
T Consensus 175 ~l~eelk~~A~~~Gl~vve~~-v~---~~ndi~~a~~~l~-g~~d~i~~p~dn~i~s~~~~l~~~a~~~ki 240 (322)
T COG2984 175 SLVEELKKEARKAGLEVVEAA-VT---SVNDIPRAVQALL-GKVDVIYIPTDNLIVSAIESLLQVANKAKI 240 (322)
T ss_pred HHHHHHHHHHHHCCCEEEEEe-cC---cccccHHHHHHhc-CCCcEEEEecchHHHHHHHHHHHHHHHhCC
Confidence 788999999999999886542 32 3445566666665 5677888877653 34456777777654
No 93
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=98.48 E-value=4.9e-05 Score=73.53 Aligned_cols=199 Identities=10% Similarity=0.029 Sum_probs=120.6
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEE-EcCCChHHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAI-IGPQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~ai-iGp~~s~~~~ 111 (574)
+||++.|.. ..+-.....+++.+.++ .|+++.+...+...++..-.+....++.+++.+| +.|..+....
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKK--------LGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVNLV 72 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHH--------hCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChHHhH
Confidence 589999853 22222344455555554 2566666655666676666666777888888874 5565444333
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEcCC--CCcchHHHHHH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVDDD--HGRNGIAALGD 187 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~--~W~~v~ii~~~~~--~g~~~~~~l~~ 187 (574)
.....+...+||+|...... .... .+ .+.+++...+..+++.+... |.++++++....+ ......+.+.+
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~---~~~~-~~--~V~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g~~~ 146 (275)
T cd06320 73 PAVERAKKKGIPVVNVNDKL---IPNA-TA--FVGTDNKANGVRGAEWIIDKLAEGGKVAIIEGKAGAFAAEQRTEGFTE 146 (275)
T ss_pred HHHHHHHHCCCeEEEECCCC---CCcc-ce--EEecCcHHHHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHH
Confidence 44456678899999874322 1111 12 24666777788888877655 8999999975332 23455678899
Q ss_pred HHhhc-CcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe-ChHHHHHHHHHHHHCCCC
Q 008205 188 KLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT-YDIWGLEVLNAAKHLRMM 248 (574)
Q Consensus 188 ~~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~-~~~~~~~il~~a~~~gm~ 248 (574)
.+++. |+.+.... .......+....++++.....++-.++| +...+..+++.+++.|+.
T Consensus 147 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~al~~~g~~ 207 (275)
T cd06320 147 AIKKASGIEVVASQ--PADWDREKAYDVATTILQRNPDLKAIYCNNDTMALGVVEAVKNAGKQ 207 (275)
T ss_pred HHhhCCCcEEEEec--CCCccHHHHHHHHHHHHHhCCCccEEEECCchhHHHHHHHHHhcCCC
Confidence 99988 87765322 1112333444555555444333333344 455566788888998874
No 94
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=98.48 E-value=1.8e-05 Score=76.84 Aligned_cols=201 Identities=13% Similarity=0.124 Sum_probs=128.0
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHLV 113 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 113 (574)
+||++.+.+...-.....+++ +.+++.+..+ |.++.+.+.|+..++......+.++.++++.+||+..++. ....
T Consensus 1 ~igv~~~~~~~~~~~~~~gi~---~~~~~~g~~~-g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vd~iI~~~~~~-~~~~ 75 (281)
T cd06325 1 KVGILQLVEHPALDAARKGFK---DGLKEAGYKE-GKNVKIDYQNAQGDQSNLPTIARKFVADKPDLIVAIATPA-AQAA 75 (281)
T ss_pred CeEEecCCCCcchHHHHHHHH---HHHHHhCccC-CceEEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCcHH-HHHH
Confidence 589999865433233444444 4445555443 6789999999988888888888888888999999865432 2222
Q ss_pred HHhhccCCccEEecccCCCCcCC----CCCCceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEcCC-CCcchHHHHH
Q 008205 114 SHIANEFQVPLLSFAATDPSLSS----LQYPFFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVDDD-HGRNGIAALG 186 (574)
Q Consensus 114 a~~~~~~~iP~Is~~~~~~~ls~----~~~~~~~r~~ps~~~~~~ai~~ll~~~--~W~~v~ii~~~~~-~g~~~~~~l~ 186 (574)
.....++|+|..+...+.... ...+....+...+......+++++... |.+++++++.+.. ++....+.++
T Consensus 76 --~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~r~~g~~ 153 (281)
T cd06325 76 --ANATKDIPIVFTAVTDPVGAGLVKSLEKPGGNVTGVSDLVPVETQLELLKKLLPDAKTVGVLYNPSEANSVVQVKELK 153 (281)
T ss_pred --HHcCCCCCEEEEecCCccccccccccccCCCceeCeecccchHHHHHHHHHHCCCCcEEEEEeCCCCccHHHHHHHHH
Confidence 255679999987643331110 011111122233444567777777665 9999999986543 5666778899
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCC
Q 008205 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRM 247 (574)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm 247 (574)
+.+++.|+.+.... . ....++...++++... .++|++. ....+..+++++.+.|+
T Consensus 154 ~~~~~~g~~~~~~~-~---~~~~~~~~~~~~~~~~-~dai~~~-~d~~a~~~~~~~~~~~~ 208 (281)
T cd06325 154 KAAAKLGIEVVEAT-V---SSSNDVQQAAQSLAGK-VDAIYVP-TDNTVASAMEAVVKVAN 208 (281)
T ss_pred HHHHhCCCEEEEEe-c---CCHHHHHHHHHHhccc-CCEEEEc-CchhHHhHHHHHHHHHH
Confidence 99999998765432 2 2345666777777543 4655544 44566677888887765
No 95
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=98.43 E-value=2.9e-05 Score=77.11 Aligned_cols=253 Identities=10% Similarity=0.072 Sum_probs=149.5
Q ss_pred CeEEEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCCh
Q 008205 31 PVLNIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFS 107 (574)
Q Consensus 31 ~~i~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 107 (574)
.+=+|++++|++ +..|.....+|..|... +... ++-..++.++|+...+..++ ..+....|+..|+||.-.
T Consensus 256 ~~skiALLLPLtG~~a~~a~~IqdGF~aA~~~-~~~~---~~~~~~~~i~dT~~~~l~~i--~aqaqq~G~~~VVGPLlK 329 (604)
T COG3107 256 SPSKIALLLPLTGQAAVFARTIQDGFLAAKNA-PATQ---TAQVAELKIYDTSAQPLDAI--LAQAQQDGADFVVGPLLK 329 (604)
T ss_pred CchheeEEeccCChhHHHHHHHHHHHHHhccC-cccC---CccccceeeccCCcccHHHH--HHHHHhcCCcEEeccccc
Confidence 456799999998 34566677788777651 1111 22236778888876655443 123334599999999998
Q ss_pred HHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHH
Q 008205 108 VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGD 187 (574)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~ 187 (574)
.....+..--. ..||++....++..- ....-..|-+.|.| .++..++-+-.-|-+...++.+.+++|....+.|.+
T Consensus 330 ~nVe~L~~~~q-~~i~vLALN~~~n~r-~~~~~cyfaLSPED--Ea~~AA~~l~~qG~R~plvlvPr~~lG~Rv~~AF~~ 405 (604)
T COG3107 330 PNVEALLASNQ-QPIPVLALNQPENSR-NPAQLCYFALSPED--EARDAANHLWDQGKRNPLVLVPRNDLGDRVANAFNQ 405 (604)
T ss_pred hhHHHHHhCcC-CCCceeeecCCcccc-CcccceeeecChhH--HHHHHHHHHHHccccCceEEecchHHHHHHHHHHHH
Confidence 87776654332 788888765443211 11112346666655 478888888888999999999999999999999999
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHH-----------------------HhhcCC-CeEEEEEeChHHHHHHHHHHH
Q 008205 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLL-----------------------TVSSMM-SRILILHTYDIWGLEVLNAAK 243 (574)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~-----------------------~ik~~~-~~viil~~~~~~~~~il~~a~ 243 (574)
...+.|...+....+. +..+.+.-+. .+.+.. .+.|++...+.++..|--...
T Consensus 406 ~Wq~~gg~~v~~~~fg---~~~~l~~~i~~~a~ir~~~~p~~~~~~~g~~~~p~~~~d~iDaVyivAtp~el~~IKP~ia 482 (604)
T COG3107 406 EWQKLGGGTVLQQKFG---STSELRQGINDGAGIRLTGLPADLTTTNGLQTPPLDDQDTIDAVYIVATPSELALIKPMIA 482 (604)
T ss_pred HHHHhcCCchhHhhcC---cHHHHHhhcccccceeecCCccchhcccCCCCCCcccccccceEEEEecchhHhHHhhHHH
Confidence 9998876333222221 1111111111 122223 677888888888776655544
Q ss_pred HCCCCCCCeEEEEeCccccccCCCCcCChhhhhhccceEEEEE---ecCCChHHHHHHHHHH
Q 008205 244 HLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRM---YTQSSEEKRKFVTRWR 302 (574)
Q Consensus 244 ~~gm~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~f~~~~~ 302 (574)
..+....--.|-.+.....+ ..+++...++|+..-.. ..+..+.+++....|.
T Consensus 483 ~~~~~~~~p~yaSSr~~~gT------~~P~~~~~m~GiqysdiP~l~~~~~p~~qq~a~~~p 538 (604)
T COG3107 483 MANGSDSPPLYASSRSSQGT------NGPDFRLEMEGIQYSDIPWLAQPNPPLMQQAAAAWP 538 (604)
T ss_pred hhcCCCCcceeeeccccccC------CCccHHHhccCccccCCchhcCCCchHHHHHHHhcC
Confidence 33322211223222211111 11345567777644322 2345566676666664
No 96
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=98.36 E-value=0.00023 Score=69.68 Aligned_cols=200 Identities=14% Similarity=0.120 Sum_probs=116.4
Q ss_pred CeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEE-EEcCCChH
Q 008205 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVA-IIGPQFSV 108 (574)
Q Consensus 31 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~a-iiGp~~s~ 108 (574)
..-.||+++|.. ..+-.....+++.+.++. |+++ .+.++..++....+....++.+++.+ |++|..+.
T Consensus 25 ~~~~I~vi~~~~~~~f~~~~~~~i~~~~~~~--------G~~~--~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~~~ 94 (295)
T PRK10653 25 AKDTIALVVSTLNNPFFVSLKDGAQKEADKL--------GYNL--VVLDSQNNPAKELANVQDLTVRGTKILLINPTDSD 94 (295)
T ss_pred cCCeEEEEecCCCChHHHHHHHHHHHHHHHc--------CCeE--EEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChH
Confidence 344799999753 222234555666666652 3444 44566667766666666777777764 55665544
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHH-HcCCe-EEEEEEEcC--CCCcchHHH
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVD-YFGWR-NVIALYVDD--DHGRNGIAA 184 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~-~~~W~-~v~ii~~~~--~~g~~~~~~ 184 (574)
........+...++|+|....... ..+.+..+.+....-+..+++.+. ..+.+ ++.++..+. .......+.
T Consensus 95 ~~~~~l~~~~~~~ipvV~~~~~~~-----~~~~~~~V~~D~~~~g~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~R~~g 169 (295)
T PRK10653 95 AVGNAVKMANQANIPVITLDRGAT-----KGEVVSHIASDNVAGGKMAGDFIAKKLGEGAKVIQLEGIAGTSAARERGEG 169 (295)
T ss_pred HHHHHHHHHHHCCCCEEEEccCCC-----CCceeeEEccChHHHHHHHHHHHHHHhCCCceEEEEEccCCCccHHHHHHH
Confidence 433445666778999998753211 112344566666666677777654 44653 566665332 223466788
Q ss_pred HHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeE-EEEEeChHHHHHHHHHHHHCCC
Q 008205 185 LGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRI-LILHTYDIWGLEVLNAAKHLRM 247 (574)
Q Consensus 185 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~v-iil~~~~~~~~~il~~a~~~gm 247 (574)
+++.+++.|+.+.... ....+..+....++++.+..++. .+++.+...+..+++++++.|+
T Consensus 170 f~~al~~~g~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~l~al~~~G~ 231 (295)
T PRK10653 170 FKQAVAAHKFNVLASQ--PADFDRTKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK 231 (295)
T ss_pred HHHHHhhCCCEEEEec--CCCCCHHHHHHHHHHHHHhCCCcCEEEECCChhHHHHHHHHHHcCC
Confidence 9999999987664321 11123233344555554443332 3334455666678999999987
No 97
>PRK15007 putative ABC transporter arginine-biding protein; Provisional
Probab=98.35 E-value=7.2e-07 Score=84.67 Aligned_cols=84 Identities=13% Similarity=0.173 Sum_probs=68.9
Q ss_pred CCceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhccccccccc
Q 008205 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKI 548 (574)
Q Consensus 469 ~~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~ 548 (574)
..+++|++.. .++||.... .+++++||++|+++++++.+|++ ++++.. .|+.++..|.+|++|++
T Consensus 20 ~~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~lg~~--~~~~~~-------~~~~~~~~l~~g~~D~~--- 84 (243)
T PRK15007 20 AETIRFATEA--SYPPFESID-ANNQIVGFDVDLAQALCKEIDAT--CTFSNQ-------AFDSLIPSLKFRRVEAV--- 84 (243)
T ss_pred CCcEEEEeCC--CCCCceeeC-CCCCEEeeeHHHHHHHHHHhCCc--EEEEeC-------CHHHHhHHHhCCCcCEE---
Confidence 3568888853 456665432 35679999999999999999999 888776 89999999999999998
Q ss_pred ccceeeeEEEEeeCc----eeeecccc
Q 008205 549 FFNLVILFAILANGG----FLVPCRSM 571 (574)
Q Consensus 549 ~~~~~~~~~~~~~~~----~~v~f~~~ 571 (574)
+++++++++|+ |+-||+..
T Consensus 85 ----~~~~~~~~~r~~~~~fs~p~~~~ 107 (243)
T PRK15007 85 ----MAGMDITPEREKQVLFTTPYYDN 107 (243)
T ss_pred ----EEcCccCHHHhcccceecCcccc
Confidence 88889999997 77787654
No 98
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed
Probab=98.35 E-value=7.4e-07 Score=85.19 Aligned_cols=86 Identities=20% Similarity=0.223 Sum_probs=67.5
Q ss_pred CCceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhC-CCCcCeEEEECCCCCCCCChHHHHHHhhhcccccccc
Q 008205 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELL-PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKK 547 (574)
Q Consensus 469 ~~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l-~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~ 547 (574)
.+.++|++.. .++||......+++++||++||++++++.| |.++.++++.+ .|+..+..|.+|++|++
T Consensus 37 ~g~l~vg~~~--~~pP~~~~~~~~g~~~G~~vdl~~~ia~~llg~~~~~~~~~~-------~~~~~~~~l~~g~~D~~-- 105 (259)
T PRK11917 37 KGQLIVGVKN--DVPHYALLDQATGEIKGFEIDVAKLLAKSILGDDKKIKLVAV-------NAKTRGPLLDNGSVDAV-- 105 (259)
T ss_pred CCEEEEEECC--CCCCceeeeCCCCceeEeeHHHHHHHHHHhcCCCccEEEEEc-------ChhhHHHHHHCCCccEE--
Confidence 4668998854 466765433335589999999999999995 76544777777 78888899999999999
Q ss_pred cccceeeeEEEEeeCc----eeeeccc
Q 008205 548 IFFNLVILFAILANGG----FLVPCRS 570 (574)
Q Consensus 548 ~~~~~~~~~~~~~~~~----~~v~f~~ 570 (574)
++++++|+||+ |+-||+.
T Consensus 106 -----~~~~~~t~eR~~~~~fs~py~~ 127 (259)
T PRK11917 106 -----IATFTITPERKRIYNFSEPYYQ 127 (259)
T ss_pred -----EecccCChhhhheeeeccCcee
Confidence 99999999998 5556554
No 99
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=98.32 E-value=6.3e-05 Score=72.27 Aligned_cols=202 Identities=14% Similarity=0.144 Sum_probs=120.2
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 112 (574)
.||+++|.. ...-.....++..+.++ . |+.+. +.++..++....+.+.+++..++.+||..........
T Consensus 1 ~igvv~~~~~~~~~~~~~~~i~~~~~~----~----g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~ 70 (266)
T cd06282 1 TVGVVLPSLANPVFAECVQGIQEEARA----A----GYSLL--LATTDYDAEREADAVETLLRQRVDGLILTVADAATSP 70 (266)
T ss_pred CeEEEeCCCCcchHHHHHHHHHHHHHH----C----CCEEE--EeeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCchH
Confidence 378888754 22222334444444433 1 34444 4555566666666777777888988886333222223
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEc---CCCCcchHHHHHHHH
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVD---DDHGRNGIAALGDKL 189 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~---~~~g~~~~~~l~~~~ 189 (574)
....+...+||+|......+ ...++ +.......+..+++.+...|.++++++..+ .+++....+.+++.+
T Consensus 71 ~~~~~~~~~ipvV~~~~~~~----~~~~~---v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~r~~gf~~~l 143 (266)
T cd06282 71 ALDLLDAERVPYVLAYNDPQ----PGRPS---VSVDNRAAARDVAQALAALGHRRIAMLAGRLAASDRARQRYAGYRAAM 143 (266)
T ss_pred HHHHHhhCCCCEEEEeccCC----CCCCE---EeeCcHHHHHHHHHHHHHcCcccEEEeccccccCchHHHHHHHHHHHH
Confidence 45667788999988643321 12333 235666778888888877899999999743 224556678888999
Q ss_pred hhcCcEEEEEeecCCCCChhhHHHHHHH-hhcC-CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEE
Q 008205 190 AEKRCRLSHKVPLSPKGSRNQIIDTLLT-VSSM-MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWI 255 (574)
Q Consensus 190 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~-ik~~-~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i 255 (574)
++.|+.+....... .+..+....+.+ ++.. ..+.|+ .++...+..+++++++.|+..++-+-+
T Consensus 144 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~~p~di~v 208 (266)
T cd06282 144 RAAGLAPLPPVEIP--FNTAALPSALLALLTAHPAPTAIF-CSNDLLALAVIRALRRLGLRVPDDLSV 208 (266)
T ss_pred HHcCCCCCccccCC--CcHHHHHHHHHHHhcCCCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 88887543221122 222223344444 4433 345444 456677788999999999854443333
No 100
>PRK10797 glutamate and aspartate transporter subunit; Provisional
Probab=98.28 E-value=1.1e-06 Score=86.03 Aligned_cols=82 Identities=17% Similarity=0.104 Sum_probs=63.8
Q ss_pred CceEEeccCccccccceeccCCCcccceeeHHHHHHHHH----hCC---CCcCeEEEECCCCCCCCChHHHHHHhhhccc
Q 008205 470 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLE----LLP---YAVPYKLVPFGDGHNSPKRFDLLRLVSEEVS 542 (574)
Q Consensus 470 ~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~----~l~---f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~ 542 (574)
..|+|++.. .|+||.... .++.+.||+|||++++++ .|| ++ ++++.. .|..++..|..|++
T Consensus 40 g~L~Vg~~~--~~pP~~f~~-~~g~~~G~didl~~~ia~~l~~~lg~~~~~--~~~v~~-------~~~~~i~~L~~G~~ 107 (302)
T PRK10797 40 GVIVVGHRE--SSVPFSYYD-NQQKVVGYSQDYSNAIVEAVKKKLNKPDLQ--VKLIPI-------TSQNRIPLLQNGTF 107 (302)
T ss_pred CeEEEEEcC--CCCCcceEC-CCCCEeeecHHHHHHHHHHHHHhhCCCCce--EEEEEc-------ChHhHHHHHHCCCc
Confidence 557888754 455655432 345699999998888766 554 55 888887 89999999999999
Q ss_pred ccccccccceeeeEEEEeeCc----eeeeccc
Q 008205 543 MKRKKIFFNLVILFAILANGG----FLVPCRS 570 (574)
Q Consensus 543 d~~~~~~~~~~~~~~~~~~~~----~~v~f~~ 570 (574)
|++ ++++++|++|+ |+-|+..
T Consensus 108 Di~-------~~~~~~t~eR~~~~~fS~Py~~ 132 (302)
T PRK10797 108 DFE-------CGSTTNNLERQKQAAFSDTIFV 132 (302)
T ss_pred cEE-------ecCCccCcchhhcceecccEee
Confidence 999 88999999998 6667654
No 101
>PRK15010 ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional
Probab=98.28 E-value=1.1e-06 Score=84.21 Aligned_cols=83 Identities=16% Similarity=0.185 Sum_probs=68.9
Q ss_pred CCceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhccccccccc
Q 008205 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKI 548 (574)
Q Consensus 469 ~~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~ 548 (574)
.++++|++.. .|+||....+ +..+.||.+||++++++.+|.+ ++++.. .|+.++..+..|++|++
T Consensus 25 ~~~l~v~~~~--~~pPf~~~~~-~g~~~G~~vdl~~~ia~~lg~~--~~~~~~-------~~~~~~~~l~~g~~Di~--- 89 (260)
T PRK15010 25 PETVRIGTDT--TYAPFSSKDA-KGDFVGFDIDLGNEMCKRMQVK--CTWVAS-------DFDALIPSLKAKKIDAI--- 89 (260)
T ss_pred CCeEEEEecC--CcCCceeECC-CCCEEeeeHHHHHHHHHHhCCc--eEEEeC-------CHHHHHHHHHCCCCCEE---
Confidence 4678888742 4667665433 4579999999999999999999 888776 89999999999999999
Q ss_pred ccceeeeEEEEeeCc----eeeeccc
Q 008205 549 FFNLVILFAILANGG----FLVPCRS 570 (574)
Q Consensus 549 ~~~~~~~~~~~~~~~----~~v~f~~ 570 (574)
++++++|++|+ |+.|+..
T Consensus 90 ----~~~~~~t~eR~~~~~fs~p~~~ 111 (260)
T PRK15010 90 ----ISSLSITDKRQQEIAFSDKLYA 111 (260)
T ss_pred ----EecCcCCHHHHhhcccccceEe
Confidence 88899999998 7777754
No 102
>TIGR03870 ABC_MoxJ methanol oxidation system protein MoxJ. This predicted periplasmic protein, called MoxJ or MxaJ, is required for methanol oxidation in Methylobacterium extorquens. Two differing lines of evidence suggest two different roles. Forming one view, homology suggests it is the substrate-binding protein of an ABC transporter associated with methanol oxidation. The gene, furthermore, is found regular in genomes with, and only two or three genes away from, a corresponding permease and ATP-binding cassette gene pair. The other view is that this protein is an accessory factor or additional subunit of methanol dehydrogenase itself. Mutational studies show a dependence on this protein for expression of the PQQ-dependent, two-subunit methanol dehydrogenase (MxaF and MxaI) in Methylobacterium extorquens, as if it is a chaperone for enzyme assembly or a third subunit. A homologous N-terminal sequence was found in Paracoccus denitrificans as a 32Kd third subunit. This protein may, in
Probab=98.24 E-value=9.2e-07 Score=83.96 Aligned_cols=76 Identities=11% Similarity=0.062 Sum_probs=61.8
Q ss_pred eEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHH---HHhhhccccccccc
Q 008205 472 LRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL---RLVSEEVSMKRKKI 548 (574)
Q Consensus 472 ~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli---~~l~~~~~d~~~~~ 548 (574)
++|++.. .|+||... .+ .||.|||+++|++.||++ ++++.. +|++++ ..|.+|++|++
T Consensus 2 l~vg~~~--~~pPf~~~-~~----~Gfdvdl~~~ia~~lg~~--~~~~~~-------~~~~~~~~~~~L~~g~~Dii--- 62 (246)
T TIGR03870 2 LRVCAAT--KEAPYSTK-DG----SGFENKIAAALAAAMGRK--VVFVWL-------AKPAIYLVRDGLDKKLCDVV--- 62 (246)
T ss_pred eEEEeCC--CCCCCccC-CC----CcchHHHHHHHHHHhCCC--eEEEEe-------ccchhhHHHHHHhcCCccEE---
Confidence 5777743 46676653 22 799999999999999999 899887 899987 69999999998
Q ss_pred ccceeeeEEEEeeCc-eeeecccc
Q 008205 549 FFNLVILFAILANGG-FLVPCRSM 571 (574)
Q Consensus 549 ~~~~~~~~~~~~~~~-~~v~f~~~ 571 (574)
+ ++++|++|- |+.|++..
T Consensus 63 ----~-~~~~t~~r~~fS~PY~~~ 81 (246)
T TIGR03870 63 ----L-GLDTGDPRVLTTKPYYRS 81 (246)
T ss_pred ----E-eCCCChHHHhcccCcEEe
Confidence 7 589999985 88888753
No 103
>PRK15437 histidine ABC transporter substrate-binding protein HisJ; Provisional
Probab=98.20 E-value=1.9e-06 Score=82.58 Aligned_cols=83 Identities=14% Similarity=0.188 Sum_probs=67.1
Q ss_pred CCceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhccccccccc
Q 008205 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKI 548 (574)
Q Consensus 469 ~~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~ 548 (574)
.+.|++++.. .++||.... .++++.||++|+++++++.+|.+ ++++.. .|+.++..+.+|++|++
T Consensus 25 ~~~l~v~~~~--~~~P~~~~~-~~g~~~G~~vdi~~~ia~~lg~~--i~~~~~-------pw~~~~~~l~~g~~D~~--- 89 (259)
T PRK15437 25 PQNIRIGTDP--TYAPFESKN-SQGELVGFDIDLAKELCKRINTQ--CTFVEN-------PLDALIPSLKAKKIDAI--- 89 (259)
T ss_pred CCeEEEEeCC--CCCCcceeC-CCCCEEeeeHHHHHHHHHHcCCc--eEEEeC-------CHHHHHHHHHCCCCCEE---
Confidence 3567887742 355665432 34579999999999999999998 888877 79999999999999998
Q ss_pred ccceeeeEEEEeeCc----eeeeccc
Q 008205 549 FFNLVILFAILANGG----FLVPCRS 570 (574)
Q Consensus 549 ~~~~~~~~~~~~~~~----~~v~f~~ 570 (574)
+++++.|++|+ |+.|+..
T Consensus 90 ----~~~~~~t~eR~~~~~fs~p~~~ 111 (259)
T PRK15437 90 ----MSSLSITEKRQQEIAFTDKLYA 111 (259)
T ss_pred ----EecCCCCHHHhhhccccchhhc
Confidence 88899999997 6666544
No 104
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=98.18 E-value=0.00023 Score=68.51 Aligned_cols=203 Identities=18% Similarity=0.128 Sum_probs=119.4
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 112 (574)
.||+++|.. ...-.....++..++++. |+.+ .+.++..++....+.+..+++.++.++|--..... ..
T Consensus 1 ~i~vv~p~~~~~~~~~~~~~i~~~~~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~-~~ 69 (268)
T cd06273 1 TIGAIVPTLDNAIFARVIQAFQETLAAH--------GYTL--LVASSGYDLDREYAQARKLLERGVDGLALIGLDHS-PA 69 (268)
T ss_pred CeEEEeCCCCCchHHHHHHHHHHHHHHC--------CCEE--EEecCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HH
Confidence 389999853 222233444454444441 3444 44677777777667777788877776553211111 23
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcC---CCCcchHHHHHHHH
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD---DHGRNGIAALGDKL 189 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~---~~g~~~~~~l~~~~ 189 (574)
....+...++|+|......+ ....++ +.......+..+++.+...|.++++++.... ..+....+.|++.+
T Consensus 70 ~~~~l~~~~iPvv~~~~~~~---~~~~~~---v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~r~~gf~~~l 143 (268)
T cd06273 70 LLDLLARRGVPYVATWNYSP---DSPYPC---VGFDNREAGRLAARHLIALGHRRIAMIFGPTQGNDRARARRAGVRAAL 143 (268)
T ss_pred HHHHHHhCCCCEEEEcCCCC---CCCCCE---EEeChHHHHHHHHHHHHHCCCCeEEEEeccccCCccHHHHHHHHHHHH
Confidence 33456778999998743322 112233 4456777788888887777999999997432 23456778889999
Q ss_pred hhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEE
Q 008205 190 AEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVW 254 (574)
Q Consensus 190 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~ 254 (574)
++.++.+.....+....+..+....+.++.+. .+++|+. ++...+..+++++++.|+..++.+-
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~~~~a~~~~~~l~~~g~~~p~~i~ 209 (268)
T cd06273 144 AEAGLELPELWQVEAPYSIADGRAALRQLLEQPPRPTAVIC-GNDVLALGALYEARRLGLSVPEDLS 209 (268)
T ss_pred HHcCCCCCHHHeeeCCCcHHHHHHHHHHHHcCCCCCCEEEE-cChHHHHHHHHHHHHcCCCCCCceE
Confidence 98875432211111112223334455555432 3555544 5666677888999999886554433
No 105
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=98.15 E-value=1e-06 Score=82.27 Aligned_cols=81 Identities=25% Similarity=0.322 Sum_probs=65.4
Q ss_pred eEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhcccccccccccc
Q 008205 472 LRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKIFFN 551 (574)
Q Consensus 472 ~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~~~~ 551 (574)
|||++.. .++|+..... +....|+.+|+++++++.+|++ ++++.. .|+.++..|.+|++|++
T Consensus 1 l~V~~~~--~~~P~~~~~~-~~~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~------ 62 (225)
T PF00497_consen 1 LRVGVDE--DYPPFSYIDE-DGEPSGIDVDLLRAIAKRLGIK--IEFVPM-------PWSRLLEMLENGKADII------ 62 (225)
T ss_dssp EEEEEES--EBTTTBEEET-TSEEESHHHHHHHHHHHHHTCE--EEEEEE-------EGGGHHHHHHTTSSSEE------
T ss_pred CEEEEcC--CCCCeEEECC-CCCEEEEhHHHHHHHHhhcccc--cceeec-------ccccccccccccccccc------
Confidence 4677733 3555554332 6679999999999999999999 888887 89999999999999999
Q ss_pred eeeeEEEEeeCc----eeeecccc
Q 008205 552 LVILFAILANGG----FLVPCRSM 571 (574)
Q Consensus 552 ~~~~~~~~~~~~----~~v~f~~~ 571 (574)
++++++|++|+ |+.|+++.
T Consensus 63 -~~~~~~~~~r~~~~~~s~p~~~~ 85 (225)
T PF00497_consen 63 -IGGLSITPERAKKFDFSDPYYSS 85 (225)
T ss_dssp -ESSEB-BHHHHTTEEEESESEEE
T ss_pred -cccccccccccccccccccccch
Confidence 88999999997 67776654
No 106
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=98.14 E-value=0.0005 Score=66.40 Aligned_cols=201 Identities=17% Similarity=0.079 Sum_probs=115.1
Q ss_pred EEEEEeccC--CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCChHHH
Q 008205 34 NIGAVFALN--STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVIA 110 (574)
Q Consensus 34 ~IG~l~~~~--~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~ 110 (574)
.||+++|.. ..+......+++.+.++. |+. +.+.++..++....+....++.+++.+||. +..+...
T Consensus 1 ~i~vi~p~~~~~~~~~~~~~g~~~~~~~~--------g~~--~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~ 70 (275)
T cd06317 1 TIGYTQNNVGSHSYQTTYNKAFQAAAEED--------GVE--VIVLDANGDVARQAAQVEDLIAQKVDGIILWPTDGQAY 70 (275)
T ss_pred CeEEEecccCCCHHHHHHHHHHHHHHHhc--------CCE--EEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCCcccc
Confidence 378888863 333445556666666651 344 445666667777667777778888888754 4443333
Q ss_pred HHHHHhhccCCccEEecccCCCCcCCCCCCceEE-ecCChHHHHHHHHHHHHHc--CCeEEEEEEEcCCC--CcchHHHH
Q 008205 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVR-TTQSDLYQMAAIADIVDYF--GWRNVIALYVDDDH--GRNGIAAL 185 (574)
Q Consensus 111 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r-~~ps~~~~~~ai~~ll~~~--~W~~v~ii~~~~~~--g~~~~~~l 185 (574)
......+...++|+|...... .....++.+. +.+.+...+...++.+... |-+++++++...+. +....+.+
T Consensus 71 ~~~l~~~~~~~iPvV~~~~~~---~~~~~~~v~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g~ 147 (275)
T cd06317 71 IPGLRKAKQAGIPVVITNSNI---SEKGFEFIKSFTGPDDISQGERSAEAMCKALGGKGQIVVIAGQPGNGTAIERQKGF 147 (275)
T ss_pred HHHHHHHHHCCCcEEEeCCCC---CCCccchhhhhccccHHHHHHHHHHHHHHHcCCCceEEEEecCCCCchHHHHHHHH
Confidence 333455677899999865432 1122343322 2344555666666665443 67899999754333 34456788
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHh-hc--CCCeEEEEEeChHHHHHHHHHHHHCCCC
Q 008205 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTV-SS--MMSRILILHTYDIWGLEVLNAAKHLRMM 248 (574)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i-k~--~~~~viil~~~~~~~~~il~~a~~~gm~ 248 (574)
++.+++.|..+..........+..+....++++ .+ .+.+.|+ .++...+..+++++++.|+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~~l~~~g~~ 212 (275)
T cd06317 148 EDELAEVCPGVEVLDTQPADWDREKAQVAMEALITKFGDDIDGVY-AGDDNMARGALNAAKEAGLA 212 (275)
T ss_pred HHHHHhhCCCCEEEeccCCCCCHHHHHHHHHHHHHhCCCCccEEE-ECCCcHHHHHHHHHHhcCCc
Confidence 888888864332221121112222222334443 22 2345555 44555678899999999975
No 107
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=98.14 E-value=0.00068 Score=65.15 Aligned_cols=204 Identities=15% Similarity=0.107 Sum_probs=118.4
Q ss_pred EEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEE-EEcCCChHHHHH
Q 008205 35 IGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVA-IIGPQFSVIAHL 112 (574)
Q Consensus 35 IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~a-iiGp~~s~~~~~ 112 (574)
||+++|.. ..+......++..+.++. |+++ .+.++..++....+...+++.+++.+ |++|..+.....
T Consensus 2 I~vv~~~~~~~~~~~~~~~i~~~~~~~--------g~~v--~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~~~~~~~~~ 71 (268)
T cd06323 2 IGLSVSTLNNPFFVTLKDGAQKEAKEL--------GYEL--TVLDAQNDAAKQLNDIEDLITRGVDAIIINPTDSDAVVP 71 (268)
T ss_pred eeEecccccCHHHHHHHHHHHHHHHHc--------CceE--EecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHH
Confidence 78888753 333344556666665552 3444 45666667776667777777878887 555555443333
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEcC--CCCcchHHHHHHH
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVDD--DHGRNGIAALGDK 188 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~--~W~~v~ii~~~~--~~g~~~~~~l~~~ 188 (574)
....+...++|+|......+. ...+-.+..+....+..+++.+... |-+++++++.+. ..+....+.+++.
T Consensus 72 ~l~~l~~~~ipvv~~~~~~~~-----~~~~~~v~~d~~~~~~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g~~~~ 146 (268)
T cd06323 72 AVKAANEAGIPVFTIDREANG-----GEVVSQIASDNVAGGKMAAEYLVKLLGGKGKVVELQGIPGASAARERGKGFHEV 146 (268)
T ss_pred HHHHHHHCCCcEEEEccCCCC-----CceEEEEccCcHHHHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHHH
Confidence 334456779999987543221 1223345556665677788877665 779999998643 3455667888888
Q ss_pred Hhhc-CcEEEEEeecCCCCChhhHHHHHHHhhcCCCeE-EEEEeChHHHHHHHHHHHHCCCCCCCeEEEEe
Q 008205 189 LAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRI-LILHTYDIWGLEVLNAAKHLRMMESGYVWIVT 257 (574)
Q Consensus 189 ~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~v-iil~~~~~~~~~il~~a~~~gm~~~~~~~i~~ 257 (574)
+++. |+.+....... .+..+....+.++....++. .|+..+...+..+++++.+.|+ .+...+..
T Consensus 147 l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~--~di~iig~ 213 (268)
T cd06323 147 VDKYPGLKVVASQPAD--FDRAKGLNVMENILQAHPDIKGVFAQNDEMALGAIEALKAAGK--DDVKVVGF 213 (268)
T ss_pred HHhCCCcEEEecccCC--CCHHHHHHHHHHHHHHCCCcCEEEEcCCchHHHHHHHHHHcCC--CCcEEEEe
Confidence 8884 77654211111 22223333444443333322 3334455556678888999887 34444443
No 108
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed
Probab=98.13 E-value=3.3e-06 Score=80.35 Aligned_cols=82 Identities=17% Similarity=0.263 Sum_probs=66.2
Q ss_pred CCceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhccccccccc
Q 008205 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKI 548 (574)
Q Consensus 469 ~~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~ 548 (574)
..+++|++.. .|+||.... ++.+.||.+||++++++.+|.+ ++++.. .|.+++..|.+|++|++
T Consensus 24 ~~~l~v~~~~--~~~P~~~~~--~g~~~G~~vdl~~~ia~~lg~~--~~~~~~-------~~~~~~~~l~~G~vDi~--- 87 (247)
T PRK09495 24 DKKLVVATDT--AFVPFEFKQ--GDKYVGFDIDLWAAIAKELKLD--YTLKPM-------DFSGIIPALQTKNVDLA--- 87 (247)
T ss_pred CCeEEEEeCC--CCCCeeecC--CCceEEEeHHHHHHHHHHhCCc--eEEEeC-------CHHHHHHHHhCCCcCEE---
Confidence 4567888642 456664332 3569999999999999999988 888776 79999999999999999
Q ss_pred ccceeeeEEEEeeCc----eeeeccc
Q 008205 549 FFNLVILFAILANGG----FLVPCRS 570 (574)
Q Consensus 549 ~~~~~~~~~~~~~~~----~~v~f~~ 570 (574)
++++++|++|+ |+.|++.
T Consensus 88 ----~~~~~~t~~R~~~~~fs~p~~~ 109 (247)
T PRK09495 88 ----LAGITITDERKKAIDFSDGYYK 109 (247)
T ss_pred ----EecCccCHHHHhhccccchhee
Confidence 88899999997 6666654
No 109
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=98.11 E-value=0.001 Score=64.36 Aligned_cols=200 Identities=12% Similarity=0.039 Sum_probs=115.1
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEE-EcCCChHHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAI-IGPQFSVIAHL 112 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~ai-iGp~~s~~~~~ 112 (574)
+||++.|... ......+..++++.=+.. |+++ .+.++..++....+...+++..++.+| ++|..+.....
T Consensus 1 ~i~vi~~~~~---~~~~~~~~~~i~~~~~~~----g~~~--~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~ 71 (277)
T cd06319 1 QIAYIVSDLR---IPFWQIMGRGVKSKAKAL----GYDA--VELSAENSAKKELENLRTAIDKGVSGIIISPTNSSAAVT 71 (277)
T ss_pred CeEEEeCCCC---chHHHHHHHHHHHHHHhc----CCeE--EEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCchhhhHH
Confidence 4788887642 123333333333322221 3444 456666777766666777777888877 46655544444
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHc------CCeEEEEEEEcC--CCCcchHHH
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF------GWRNVIALYVDD--DHGRNGIAA 184 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~------~W~~v~ii~~~~--~~g~~~~~~ 184 (574)
....+...++|+|...... .+ ..++..+.++...-+..+++++... |-++++++.... ..+....+.
T Consensus 72 ~l~~~~~~~ipvV~~~~~~---~~--~~~~~~v~~d~~~~g~~~~~~l~~~~~~~~~g~~~i~~i~~~~~~~~~~~r~~g 146 (277)
T cd06319 72 LLKLAAQAKIPVVIADIGA---EG--GDYVSYIKSDNYEGAYDLGKFLAAAMKAQGWADGKVGMVAIPQKRKNGQKRTKG 146 (277)
T ss_pred HHHHHHHCCCCEEEEecCC---CC--CceEEEEeeccHHHHHHHHHHHHHHHHhhCCCCCcEEEEeccCCCccHHHHHHH
Confidence 5566778899999864321 11 1233445566665566666655433 668999997432 335667788
Q ss_pred HHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeE-EEEEeChHHHHHHHHHHHHCCCC
Q 008205 185 LGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRI-LILHTYDIWGLEVLNAAKHLRMM 248 (574)
Q Consensus 185 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~v-iil~~~~~~~~~il~~a~~~gm~ 248 (574)
+++.+++.|+.+.... .....+..+....++++.+..++. .|+......+.-+++++++.|+.
T Consensus 147 f~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 210 (277)
T cd06319 147 FKEAMKEAGCDLAGIR-QQKDFSYQETFDYTNDLLTANPDIRAIWLQGSDRYQGALDAIATAGKT 210 (277)
T ss_pred HHHHHHhcCCceEeec-cCCCCCHHHHHHHHHHHHHhCCCCCEEEECCCccchHHHHHHHHcCCC
Confidence 9999999887644221 111122233344555554444433 33334455567889999999975
No 110
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=98.09 E-value=0.0014 Score=63.06 Aligned_cols=209 Identities=15% Similarity=0.082 Sum_probs=120.6
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEE-cCCChHHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAII-GPQFSVIAHL 112 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii-Gp~~s~~~~~ 112 (574)
+||+++|... ......+..++++.=+.. .|+ .+.+.++..++..-.+...++++.++.++| .|..+.....
T Consensus 1 ~igvi~~~~~---~~~~~~~~~gi~~~~~~~---~~~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~ 72 (272)
T cd06301 1 KIGVSMANFD---DNFLTLLRNAMKEHAKVL---GGV--ELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDTAATAP 72 (272)
T ss_pred CeeEeecccC---CHHHHHHHHHHHHHHHHc---CCc--EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhhHH
Confidence 5899987642 233344444444432220 134 455566666777766777778888888875 5555443344
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEcCC--CCcchHHHHHHH
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVDDD--HGRNGIAALGDK 188 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~--~W~~v~ii~~~~~--~g~~~~~~l~~~ 188 (574)
+...+...+||+|......+.. .+.+..+..++...+..+++.+... +-++++++..... ......+.+++.
T Consensus 73 ~~~~l~~~~iPvv~~~~~~~~~----~~~~~~V~~d~~~~g~~~~~~l~~~~~~~~~i~~i~~~~~~~~~~~R~~gf~~~ 148 (272)
T cd06301 73 IVKAANAAGIPLVYVNRRPENA----PKGVAYVGSDEVVAGRLQAEYVADKLGGKGNVAILMGPLGQSAQIDRTKGVEEV 148 (272)
T ss_pred HHHHHHHCCCeEEEecCCCCCC----CCeeEEEecChHHHHHHHHHHHHHHhCCCccEEEEECCCCCccHHHHHHHHHHH
Confidence 4555788899999864322111 1234456777777777777766544 4569999975432 234566788888
Q ss_pred HhhcC-cEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEe
Q 008205 189 LAEKR-CRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVT 257 (574)
Q Consensus 189 ~~~~g-~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~ 257 (574)
+++.| +.+... .....+.......++++... ..+. |++.+...+..+++.+++.|+...+...+..
T Consensus 149 l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~a-i~~~~d~~a~~~~~~l~~~g~~~~di~ivg~ 217 (272)
T cd06301 149 LAKYPDIKVVEE--QTANWSRAEAMDLMENWLSSGGKIDA-VVANNDEMALGAIMALKAAGKSDKDVPVAGI 217 (272)
T ss_pred HHHCCCcEEEec--CCCCccHHHHHHHHHHHHHhCCCCCE-EEECCCchHHHHHHHHHHcCCCCCCcEEEee
Confidence 88887 443321 11112222223444443322 3443 4445566777889999999986334445444
No 111
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein.
Probab=98.07 E-value=5e-06 Score=79.26 Aligned_cols=83 Identities=19% Similarity=0.267 Sum_probs=67.7
Q ss_pred CceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhcccccccccc
Q 008205 470 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKIF 549 (574)
Q Consensus 470 ~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~~ 549 (574)
.+++|++.. .++||.... .+.++.||++|+++++++.+|++ ++++.. .|+.++..|.+|++|++
T Consensus 24 ~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~lg~~--~~~~~~-------~~~~~~~~l~~G~~D~~---- 87 (250)
T TIGR01096 24 GSVRIGTET--GYPPFESKD-ANGKLVGFDVDLAKALCKRMKAK--CKFVEQ-------NFDGLIPSLKAKKVDAI---- 87 (250)
T ss_pred CeEEEEECC--CCCCceEEC-CCCCEEeehHHHHHHHHHHhCCe--EEEEeC-------CHHHHHHHHhCCCcCEE----
Confidence 578888732 466665432 35579999999999999999988 888876 89999999999999999
Q ss_pred cceeeeEEEEeeCc----eeeecccc
Q 008205 550 FNLVILFAILANGG----FLVPCRSM 571 (574)
Q Consensus 550 ~~~~~~~~~~~~~~----~~v~f~~~ 571 (574)
+++++.+++|+ |+.||...
T Consensus 88 ---~~~~~~~~~r~~~~~~s~p~~~~ 110 (250)
T TIGR01096 88 ---MATMSITPKRQKQIDFSDPYYAT 110 (250)
T ss_pred ---EecCccCHHHhhccccccchhcC
Confidence 77888899987 77777653
No 112
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=98.05 E-value=0.001 Score=63.61 Aligned_cols=201 Identities=11% Similarity=0.078 Sum_probs=131.3
Q ss_pred EEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEE-cCCChHHHHH
Q 008205 35 IGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAII-GPQFSVIAHL 112 (574)
Q Consensus 35 IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii-Gp~~s~~~~~ 112 (574)
||++.|.. ..+......+++.+.++. |.++.+. .+...|+..-.+.+.+++++++.+|| .|..+.....
T Consensus 1 I~vi~~~~~~~~~~~~~~g~~~~a~~~--------g~~~~~~-~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~ 71 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQQVIKGAKAAAKEL--------GYEVEIV-FDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAP 71 (257)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHHH--------TCEEEEE-EESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHH
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEEEEe-CCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHH
Confidence 68888876 334455778888888875 3555555 68888888888888999999998876 6676665556
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHH-cCC-eEEEEEEEcCCC--CcchHHHHHHH
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDY-FGW-RNVIALYVDDDH--GRNGIAALGDK 188 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~-~~W-~~v~ii~~~~~~--g~~~~~~l~~~ 188 (574)
...-+...+||+|.+... +. ...+....+.++....+..+++++.. .+= .+++++.....+ .....+.+++.
T Consensus 72 ~l~~~~~~gIpvv~~d~~-~~---~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~~~v~~~~~~~~~~~~~~r~~g~~~~ 147 (257)
T PF13407_consen 72 FLEKAKAAGIPVVTVDSD-EA---PDSPRAAYVGTDNYEAGKLAAEYLAEKLGAKGKVLILSGSPGNPNTQERLEGFRDA 147 (257)
T ss_dssp HHHHHHHTTSEEEEESST-HH---TTSTSSEEEEE-HHHHHHHHHHHHHHHHTTTEEEEEEESSTTSHHHHHHHHHHHHH
T ss_pred HHHHHhhcCceEEEEecc-cc---ccccceeeeeccHHHHHHHHHHHHHHHhccCceEEeccCCCCchHHHHHHHHHHHH
Confidence 666688889999997544 00 12244556677788888999998654 332 677777544333 23466778888
Q ss_pred Hhhc-CcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCC
Q 008205 189 LAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMME 249 (574)
Q Consensus 189 ~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~ 249 (574)
+++. ++++..... ....+.......+.++-..++-..|+.++...+..+++..++.|+.+
T Consensus 148 l~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~g~~~al~~~g~~~ 208 (257)
T PF13407_consen 148 LKEYPGVEIVDEYE-YTDWDPEDARQAIENLLQANPVDAIIACNDGMALGAAQALQQAGRAG 208 (257)
T ss_dssp HHHCTTEEEEEEEE-ECTTSHHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHHHHTTCTT
T ss_pred Hhhcceeeeeeeee-ccCCCHHHHHHHHHHhhhcCCceEEEeCCChHHHHHHHHHHHcCCcc
Confidence 8874 555554322 21234444455555443333334445567777788999999999843
No 113
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=98.05 E-value=0.0025 Score=61.44 Aligned_cols=208 Identities=10% Similarity=-0.024 Sum_probs=115.7
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCCh-HHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFS-VIAH 111 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s-~~~~ 111 (574)
|||++.|.- ..+-.....+++.+.++ .|+++.+...+...++....+....++..++.++|-.... ....
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~--------~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~~~~~~~ 72 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKE--------LGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPTDAKALV 72 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHH--------cCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCCChhhhH
Confidence 589998763 21112233333333333 1455555433334566666666777888888887753332 2223
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEcCCC--CcchHHHHHH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVDDDH--GRNGIAALGD 187 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~--~W~~v~ii~~~~~~--g~~~~~~l~~ 187 (574)
.....+...++|+|......+ + . ..+-.+.+.....+..+++.+... |.++++++....+. .....+.+++
T Consensus 73 ~~l~~~~~~~ipvV~~~~~~~---~-~-~~~~~v~~d~~~~~~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~r~~gf~~ 147 (273)
T cd06310 73 PPLKEAKDAGIPVVLIDSGLN---S-D-IAVSFVATDNVAAGKLAAEALAELLGKKGKVAVISFVPGSSTTDQREEGFLE 147 (273)
T ss_pred HHHHHHHHCCCCEEEecCCCC---C-C-cceEEEeeChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCccHHHHHHHHHH
Confidence 333444568999998743211 1 0 112234555556667777776555 89999999744332 2345678888
Q ss_pred HHhhc-CcEEEEEeecCCCCChhhHHHHHHHhhcCCCeE-EEEEeChHHHHHHHHHHHHCCCCCCCeEEEEe
Q 008205 188 KLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRI-LILHTYDIWGLEVLNAAKHLRMMESGYVWIVT 257 (574)
Q Consensus 188 ~~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~v-iil~~~~~~~~~il~~a~~~gm~~~~~~~i~~ 257 (574)
.+++. |+.+... .....+..+-...++++.....++ .|++.+...+..+++.+++.|+. .+...+..
T Consensus 148 a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~~a~g~~~~l~~~g~~-~di~vig~ 216 (273)
T cd06310 148 GLKEYPGIEIVAT--QYSDSDYAKALDITEDLLTANPDLKGIFGANEGSAVGAARAVRQAGKA-GKVKVVGF 216 (273)
T ss_pred HHHhCCCcEEEec--ccCCcCHHHHHHHHHHHHHhCCCceEEEecCchhHHHHHHHHHhcCCC-CCeEEEEe
Confidence 88888 7665431 111112223334555543333333 44444567788899999999975 44444443
No 114
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=98.04 E-value=0.0019 Score=62.32 Aligned_cols=199 Identities=14% Similarity=0.061 Sum_probs=121.4
Q ss_pred EEEEEeccC--CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-CHHHHHHHHHHhHhcCcEEEEcCC-ChHH
Q 008205 34 NIGAVFALN--STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNY-SRFLGMVEALTLLENETVAIIGPQ-FSVI 109 (574)
Q Consensus 34 ~IG~l~~~~--~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~-~~~~a~~~~~~l~~~~v~aiiGp~-~s~~ 109 (574)
+||++.|.. ..+-.....++..+.++. |+.+.+ ..+.. ++....+....++++++.++|... ....
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~~--------g~~v~~--~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~ 70 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDL--------GVDVEY--RGPETFDVADMARLIEAAIAAKPDGIVVTIPDPDA 70 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHHh--------CCEEEE--ECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHH
Confidence 588888864 223345566666666652 455544 44444 666666667777888888877633 3332
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHH-cCCeEEEEEEEcC--CCCcchHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDY-FGWRNVIALYVDD--DHGRNGIAALG 186 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~-~~W~~v~ii~~~~--~~g~~~~~~l~ 186 (574)
.......+...+||+|......+... ..+.+..+..++...+..+++.+.+ .|-++++++..+. ..+....+.++
T Consensus 71 ~~~~l~~~~~~~ipvV~~~~~~~~~~--~~~~~~~V~~d~~~~g~~~~~~l~~~~g~~~i~~i~g~~~~~~~~~r~~g~~ 148 (271)
T cd06312 71 LDPAIKRAVAAGIPVISFNAGDPKYK--ELGALAYVGQDEYAAGEAAGERLAELKGGKNVLCVIHEPGNVTLEDRCAGFA 148 (271)
T ss_pred hHHHHHHHHHCCCeEEEeCCCCCccc--cccceEEeccChHHHHHHHHHHHHHhcCCCeEEEEecCCCCccHHHHHHHHH
Confidence 23333445677999998754322111 1234566777888889999998877 8999999997432 33456778888
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCC
Q 008205 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMM 248 (574)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~ 248 (574)
+.+++.++.+.. +....+..+....++++.+. +.+. |+..+...+..+++.+++.|+.
T Consensus 149 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~a-I~~~~d~~a~g~~~al~~~g~~ 208 (271)
T cd06312 149 DGLGGAGITEEV---IETGADPTEVASRIAAYLRANPDVDA-VLTLGAPSAAPAAKALKQAGLK 208 (271)
T ss_pred HHHHhcCceeeE---eecCCCHHHHHHHHHHHHHhCCCccE-EEEeCCccchHHHHHHHhcCCC
Confidence 888888765322 11112223334444444323 2343 3344556677888889998875
No 115
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=98.03 E-value=0.00091 Score=64.49 Aligned_cols=199 Identities=15% Similarity=0.036 Sum_probs=116.0
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcC-CChHHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGP-QFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp-~~s~~~~ 111 (574)
+||++.|.. ..+-.....++..+.++. |+++ .+.++..++....+....++..++.+||.. ..+....
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~--~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~~~~~~~ 70 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEAL--------GGDL--RVYDAGGDDAKQADQIDQAIAQKVDAIIIQHGRAEVLK 70 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHc--------CCEE--EEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhH
Confidence 488888753 222234455555555542 4544 445676777776677777888899988874 3333333
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHH--cCCeEEEEEEEcC-CCCcchHHHHHHH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDY--FGWRNVIALYVDD-DHGRNGIAALGDK 188 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~--~~W~~v~ii~~~~-~~g~~~~~~l~~~ 188 (574)
.+...+...+||+|......+. +.+..+.++....++.+++.+.. .|.++++++...+ .......+.+++.
T Consensus 71 ~~i~~~~~~~ipvV~~~~~~~~------~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~g~~~~ 144 (273)
T cd06305 71 PWVKRALDAGIPVVAFDVDSDN------PKVNNTTQDDYSLARLSLDQLVKDLGGKGNVGYVNVAGFPPLDRRYDVWQAV 144 (273)
T ss_pred HHHHHHHHcCCCEEEecCCCCC------CccceeeechHHHHHHHHHHHHHHhCCCCCEEEEEccCCchHHHHHHHHHHH
Confidence 3345567789999987543211 22334666777778878887655 5889999997542 1233445677777
Q ss_pred HhhcC-cEEEEEeecCCCCChhhHHHHHHHhhcCCCeE---EEEEeChHHHHHHHHHHHHCCCC
Q 008205 189 LAEKR-CRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRI---LILHTYDIWGLEVLNAAKHLRMM 248 (574)
Q Consensus 189 ~~~~g-~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~v---iil~~~~~~~~~il~~a~~~gm~ 248 (574)
+++.+ +.+..........+..+....++++....++. .|++.+...+..++..+++.|+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~ 208 (273)
T cd06305 145 LKAYPGIKEVAELGDVSNNTAQDAAAQVEAVLKKYPKGGIDAIWAAWDEFAKGAKQALDEAGRT 208 (273)
T ss_pred HHHCCCcEEecccccccccchhHHHHHHHHHHHHCCCcccCeEEEcChhhhHHHHHHHHHcCCC
Confidence 77776 54432211111112233334455543333332 33344555677888899999875
No 116
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=98.02 E-value=0.0044 Score=62.01 Aligned_cols=208 Identities=9% Similarity=0.005 Sum_probs=115.1
Q ss_pred CCeEEEEEEeccCC-ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEE-cCCCh
Q 008205 30 PPVLNIGAVFALNS-TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAII-GPQFS 107 (574)
Q Consensus 30 ~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii-Gp~~s 107 (574)
..+-+||++.|... ..-.....+++-+.++. |+++.+...+...+...-.+....++++++.+|| .|...
T Consensus 44 r~t~~Igvv~p~~~~~f~~~~~~gi~~aa~~~--------G~~l~i~~~~~~~~~~~q~~~i~~l~~~~vdgIIl~~~~~ 115 (343)
T PRK10936 44 KKAWKLCALYPHLKDSYWLSVNYGMVEEAKRL--------GVDLKVLEAGGYYNLAKQQQQLEQCVAWGADAILLGAVTP 115 (343)
T ss_pred CCCeEEEEEecCCCchHHHHHHHHHHHHHHHh--------CCEEEEEcCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCh
Confidence 45789999998742 22223344555554432 4554443222223444444556677778888766 34443
Q ss_pred HHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHc-----CCeEEEEEEEcCC--CCcc
Q 008205 108 VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF-----GWRNVIALYVDDD--HGRN 180 (574)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~-----~W~~v~ii~~~~~--~g~~ 180 (574)
....... .+...+||+|.+..... ++ .....+.+.+...+...++.+... |-++++++..+.. ....
T Consensus 116 ~~~~~~l-~~~~~giPvV~~~~~~~--~~---~~~~~V~~D~~~~g~~aa~~L~~~~~~~~g~~~i~~i~g~~~~~~~~~ 189 (343)
T PRK10936 116 DGLNPDL-ELQAANIPVIALVNGID--SP---QVTTRVGVSWYQMGYQAGRYLAQWHPKGSKPLNVALLPGPEGAGGSKA 189 (343)
T ss_pred HHhHHHH-HHHHCCCCEEEecCCCC--Cc---cceEEEecChHHHHHHHHHHHHHHHHhcCCCceEEEEECCCCCchHHH
Confidence 3322222 45678999997632211 11 112345667777777777765544 4789999974432 2234
Q ss_pred hHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEe
Q 008205 181 GIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVT 257 (574)
Q Consensus 181 ~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~--~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~ 257 (574)
..+.+++.+++.|+++.... .. ..+...-...++++.+ .+.+.|+ +....+..+++.+++.|+. +-+.|++
T Consensus 190 R~~Gf~~~l~~~~i~~~~~~-~~-~~~~~~~~~~~~~~l~~~~~~~ai~--~~d~~A~ga~~al~~~g~~--~di~Vvg 262 (343)
T PRK10936 190 VEQGFRAAIAGSDVRIVDIA-YG-DNDKELQRNLLQELLERHPDIDYIA--GSAVAAEAAIGELRGRNLT--DKIKLVS 262 (343)
T ss_pred HHHHHHHHHhcCCCEEEEee-cC-CCcHHHHHHHHHHHHHhCCCccEEE--eCCHHHHHHHHHHHhcCCC--CCeEEEE
Confidence 56778888888888765321 11 1222223344444432 2356665 4456677788989898873 3344443
No 117
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=98.01 E-value=0.00092 Score=64.30 Aligned_cols=207 Identities=14% Similarity=0.081 Sum_probs=118.0
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhH-hcCcEEEEcCCChHHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLL-ENETVAIIGPQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~-~~~v~aiiGp~~s~~~~ 111 (574)
.||+++|.. ..+......+++.+.++ .|+.+.+...+... ......+.+.+ +.++.+||.........
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~~~~~~~~--~~~~~~~~~~l~~~~vdgiii~~~~~~~~ 70 (270)
T cd01545 1 LIGLLYDNPSPGYVSEIQLGALDACRD--------TGYQLVIEPCDSGS--PDLAERVRALLQRSRVDGVILTPPLSDNP 70 (270)
T ss_pred CEEEEEcCCCcccHHHHHHHHHHHHHh--------CCCeEEEEeCCCCc--hHHHHHHHHHHHHCCCCEEEEeCCCCCcc
Confidence 378999764 33445566677666654 25666665544322 22334455544 56888888744332223
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCC--CcchHHHHHHHH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDH--GRNGIAALGDKL 189 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~--g~~~~~~l~~~~ 189 (574)
.....+...++|+|......+. ...++ +..+....+..+++.+...|.++++++..+..+ .....+.+++.+
T Consensus 71 ~~~~~~~~~~ipvv~i~~~~~~---~~~~~---V~~d~~~~g~~a~~~l~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~~ 144 (270)
T cd01545 71 ELLDLLDEAGVPYVRIAPGTPD---PDSPC---VRIDDRAAAREMTRHLIDLGHRRIAFIAGPPDHRASAERLEGYRDAL 144 (270)
T ss_pred HHHHHHHhcCCCEEEEecCCCC---CCCCe---EEeccHHHHHHHHHHHHHCCCceEEEEeCCCCchhHHHHHHHHHHHH
Confidence 3345567789999987543321 12222 334566666778888777899999999855433 234467788888
Q ss_pred hhcCcEEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEEeChHHHHHHHHHHHHCCCCCCC-eEEEEe
Q 008205 190 AEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMESG-YVWIVT 257 (574)
Q Consensus 190 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~--~~~~viil~~~~~~~~~il~~a~~~gm~~~~-~~~i~~ 257 (574)
++.|+.+..........+..+-...++++.+ .+.+.|+ .++...+..+++++++.|...++ ...+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~-~~~d~~a~~~~~~~~~~g~~~p~~i~vig~ 214 (270)
T cd01545 145 AEAGLPLDPELVAQGDFTFESGLEAAEALLALPDRPTAIF-ASNDDMAAGVLAVAHRRGLRVPDDLSVVGF 214 (270)
T ss_pred HHcCCCCChhhEEeCCCChhhHHHHHHHHHhCCCCCCEEE-EcCcHHHHHHHHHHHHcCCCCCCceEEEEE
Confidence 8887654210011111111222233444432 2455544 45567778999999999875443 334433
No 118
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=97.97 E-value=0.0024 Score=61.56 Aligned_cols=210 Identities=11% Similarity=0.045 Sum_probs=120.2
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEE-cCCChHHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAII-GPQFSVIAHL 112 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii-Gp~~s~~~~~ 112 (574)
+||++.|.-. ......+...+++.-+.. |++ +.+.+...+...-.+....++.+++.+|| .|........
T Consensus 1 ~~g~~~~~~~---~~~~~~~~~~~~~~a~~~----g~~--~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~ 71 (273)
T cd06309 1 TVGFSQVGAE---SPWRTAETKSIKDAAEKR----GFD--LKFADAQQKQENQISAIRSFIAQGVDVIILAPVVETGWDP 71 (273)
T ss_pred CeeeccCCCC---CHHHHHHHHHHHHHHHhc----CCE--EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCccccchH
Confidence 4888888532 123333333333333222 344 44455555665555666777788888765 3444333233
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEcCC--CCcchHHHHHHH
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVDDD--HGRNGIAALGDK 188 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~--~W~~v~ii~~~~~--~g~~~~~~l~~~ 188 (574)
....+...+||+|......+. ....+++.++.+.+...+...++.+... +-+++++++.+.. ......+.+++.
T Consensus 72 ~i~~~~~~~iPvV~~~~~~~~--~~~~~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~ 149 (273)
T cd06309 72 VLKEAKAAGIPVILVDRGVDV--KDDSLYVTFIGSDFVEEGRRAADWLAKATGGKGNIVELQGTVGSSVAIDRKKGFAEV 149 (273)
T ss_pred HHHHHHHCCCCEEEEecCcCC--ccCcceeeEecCChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHH
Confidence 335567789999987543211 0112456778888888888888887666 8889999975432 223456778888
Q ss_pred Hhhc-CcEEEEEeecCCCCChhhHHHHHHHhhcC---CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEe
Q 008205 189 LAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSM---MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVT 257 (574)
Q Consensus 189 ~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~ik~~---~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~ 257 (574)
+++. ++.+... .....+..+....++++.+. ..+ .|+..+...+..+++++++.|+..++-+.|++
T Consensus 150 l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~-aI~~~~d~~a~g~~~a~~~~g~~ip~di~iig 219 (273)
T cd06309 150 IKKYPNMKIVAS--QTGDFTRAKGKEVMEALLKAHGDDID-AVYAHNDEMALGAIQAIKAAGKKPGKDIKIVS 219 (273)
T ss_pred HHHCCCCEEeec--cCCcccHHHHHHHHHHHHHhCCCCcc-EEEECCcHHHHHHHHHHHHcCCCCCCCeEEEe
Confidence 8876 4544321 11112223333445554333 234 33444556666788999999987555444443
No 119
>PRK10859 membrane-bound lytic transglycosylase F; Provisional
Probab=97.96 E-value=6.9e-06 Score=85.78 Aligned_cols=83 Identities=11% Similarity=0.057 Sum_probs=64.9
Q ss_pred CCceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhccccccccc
Q 008205 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKI 548 (574)
Q Consensus 469 ~~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~ 548 (574)
.+.|+|++.. .|+..+ ..++ ...||.+||++++++.+|++ ++++... .|+.++..|.+|++|++
T Consensus 42 ~g~LrVg~~~-~P~~~~---~~~~-~~~G~~~DLl~~ia~~LGv~--~e~v~~~------~~~~ll~aL~~G~iDi~--- 105 (482)
T PRK10859 42 RGELRVGTIN-SPLTYY---IGND-GPTGFEYELAKRFADYLGVK--LEIKVRD------NISQLFDALDKGKADLA--- 105 (482)
T ss_pred CCEEEEEEec-CCCeeE---ecCC-CcccHHHHHHHHHHHHhCCc--EEEEecC------CHHHHHHHHhCCCCCEE---
Confidence 4668998864 233222 1222 34999999999999999999 8887553 89999999999999998
Q ss_pred ccceeeeEEEEeeCc----eeeecccc
Q 008205 549 FFNLVILFAILANGG----FLVPCRSM 571 (574)
Q Consensus 549 ~~~~~~~~~~~~~~~----~~v~f~~~ 571 (574)
++++++|++|+ |+.|++..
T Consensus 106 ----~~~lt~T~eR~~~~~FS~Py~~~ 128 (482)
T PRK10859 106 ----AAGLTYTPERLKQFRFGPPYYSV 128 (482)
T ss_pred ----eccCcCChhhhccCcccCCceee
Confidence 88999999998 66676653
No 120
>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein. Members of this family are the extracellular solute-binding proteins of ABC transporters that closely resemble amino acid transporters. The member from Sinorhizobium meliloti is involved in ectoine uptake, both for osmoprotection and for catabolism. All other members of the seed alignment are found associated with ectoine catabolic genes.
Probab=97.93 E-value=9.7e-06 Score=78.41 Aligned_cols=84 Identities=19% Similarity=0.072 Sum_probs=66.0
Q ss_pred CCceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhccccccccc
Q 008205 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKI 548 (574)
Q Consensus 469 ~~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~ 548 (574)
.+.++|++.. ++|+... ..+..+.||.+||++++++.+|.+. ++++.. .|+.++..|.+|++|+.
T Consensus 32 ~~~l~v~~~~---~pP~~~~-~~~g~~~G~~~dl~~~i~~~lg~~~-~~~~~~-------~w~~~~~~l~~G~~Di~--- 96 (275)
T TIGR02995 32 QGFARIAIAN---EPPFTYV-GADGKVSGAAPDVARAIFKRLGIAD-VNASIT-------EYGALIPGLQAGRFDAI--- 96 (275)
T ss_pred CCcEEEEccC---CCCceeE-CCCCceecchHHHHHHHHHHhCCCc-eeeccC-------CHHHHHHHHHCCCcCEE---
Confidence 3568888854 5555432 2245789999999999999999861 355555 89999999999999998
Q ss_pred ccceeeeEEEEeeCc----eeeecccc
Q 008205 549 FFNLVILFAILANGG----FLVPCRSM 571 (574)
Q Consensus 549 ~~~~~~~~~~~~~~~----~~v~f~~~ 571 (574)
++++++|++|+ |+.|+++-
T Consensus 97 ----~~~~~~t~eR~~~~~fs~py~~~ 119 (275)
T TIGR02995 97 ----AAGLFIKPERCKQVAFTQPILCD 119 (275)
T ss_pred ----eecccCCHHHHhccccccceeec
Confidence 78889999997 88888654
No 121
>PRK11260 cystine transporter subunit; Provisional
Probab=97.92 E-value=1.4e-05 Score=76.83 Aligned_cols=84 Identities=20% Similarity=0.245 Sum_probs=68.2
Q ss_pred CCceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhccccccccc
Q 008205 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKI 548 (574)
Q Consensus 469 ~~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~ 548 (574)
.++++|++.. .++|+... ..++.+.||.+|+++++++.+|.+ ++++.. .|..++..|.+|++|++
T Consensus 40 ~~~l~v~~~~--~~~P~~~~-~~~g~~~G~~~dl~~~i~~~lg~~--~e~~~~-------~~~~~~~~l~~G~~D~~--- 104 (266)
T PRK11260 40 RGTLLVGLEG--TYPPFSFQ-GEDGKLTGFEVEFAEALAKHLGVK--ASLKPT-------KWDGMLASLDSKRIDVV--- 104 (266)
T ss_pred CCeEEEEeCC--CcCCceEE-CCCCCEEEehHHHHHHHHHHHCCe--EEEEeC-------CHHHHHHHHhcCCCCEE---
Confidence 4678888643 45666433 235579999999999999999999 888777 79999999999999999
Q ss_pred ccceeeeEEEEeeCc----eeeecccc
Q 008205 549 FFNLVILFAILANGG----FLVPCRSM 571 (574)
Q Consensus 549 ~~~~~~~~~~~~~~~----~~v~f~~~ 571 (574)
+++++++++|+ |+.|++..
T Consensus 105 ----~~~~~~~~~r~~~~~fs~p~~~~ 127 (266)
T PRK11260 105 ----INQVTISDERKKKYDFSTPYTVS 127 (266)
T ss_pred ----EeccccCHHHHhccccCCceeec
Confidence 77889999997 77777654
No 122
>PRK09701 D-allose transporter subunit; Provisional
Probab=97.90 E-value=0.015 Score=57.35 Aligned_cols=203 Identities=15% Similarity=0.033 Sum_probs=113.2
Q ss_pred EEEEEeccCC-ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCChHHH-
Q 008205 34 NIGAVFALNS-TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVIA- 110 (574)
Q Consensus 34 ~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~- 110 (574)
+||++.|... .+-.....++.-+.++ .|+++.+...+...+...-.+....++.+++.+||- |..+...
T Consensus 26 ~Igvi~~~~~~~f~~~~~~gi~~~a~~--------~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~ 97 (311)
T PRK09701 26 EYAVVLKTLSNPFWVDMKKGIEDEAKT--------LGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLV 97 (311)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHH--------cCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 7999998642 2222334444444433 146665543344445555556666777888887764 3333322
Q ss_pred HHHHHhhccCCccEEecccCCCC--cCCCCCCceEEecCChHHHHHHHHHHH-HHcCC--eEEEEEEEcC--CCCcchHH
Q 008205 111 HLVSHIANEFQVPLLSFAATDPS--LSSLQYPFFVRTTQSDLYQMAAIADIV-DYFGW--RNVIALYVDD--DHGRNGIA 183 (574)
Q Consensus 111 ~~va~~~~~~~iP~Is~~~~~~~--ls~~~~~~~~r~~ps~~~~~~ai~~ll-~~~~W--~~v~ii~~~~--~~g~~~~~ 183 (574)
..+.. +...+||++......+. +....-.....+.+.....+...++.+ ++.|- ++++++.... .......+
T Consensus 98 ~~l~~-~~~~giPvV~~~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~aa~~L~~~~g~~~~~i~~l~g~~~~~~~~~R~~ 176 (311)
T PRK09701 98 MPVAR-AWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRN 176 (311)
T ss_pred HHHHH-HHHCCCcEEEeCCCCCcccccccCCceEEEeccchHHHHHHHHHHHHHHhCCCCCEEEEEECCCCCccHHHHHH
Confidence 23333 35679999987543221 110111123346667777788888866 44454 7899886433 23445677
Q ss_pred HHHHHHhhcC-cEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCC
Q 008205 184 ALGDKLAEKR-CRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMM 248 (574)
Q Consensus 184 ~l~~~~~~~g-~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~ 248 (574)
.+++.+++.+ +.+... .....+..+-...++++.+. ..+ .|++.+...+..++.++++.|..
T Consensus 177 Gf~~al~~~~~~~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~-~I~~~~d~~A~g~~~al~~~G~~ 241 (311)
T PRK09701 177 GATEAFKKASQIKLVAS--QPADWDRIKALDVATNVLQRNPNIK-AIYCANDTMAMGVAQAVANAGKT 241 (311)
T ss_pred HHHHHHHhCCCcEEEEe--cCCCCCHHHHHHHHHHHHHhCCCCC-EEEECCcchHHHHHHHHHHcCCC
Confidence 8888988877 665332 11112222233445554332 344 34455566777889999998874
No 123
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=97.89 E-value=0.002 Score=61.84 Aligned_cols=201 Identities=10% Similarity=0.055 Sum_probs=115.7
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 112 (574)
.||+++|.. ..+-.....+++-+.++. |+.+.+. .+..++..-.+....++..++.+||-..+.. ...
T Consensus 1 ~i~vi~~~~~~~~~~~~~~~~~~~~~~~--------g~~~~~~--~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~-~~~ 69 (268)
T cd06298 1 TVGVIIPDITNSYFAELARGIDDIATMY--------KYNIILS--NSDNDKEKELKVLNNLLAKQVDGIIFMGGKI-SEE 69 (268)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHHHc--------CCeEEEE--eCCCCHHHHHHHHHHHHHhcCCEEEEeCCCC-cHH
Confidence 378888764 222223344444444431 4555544 3444565555566677777888877422211 123
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC---CCcchHHHHHHHH
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD---HGRNGIAALGDKL 189 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~---~g~~~~~~l~~~~ 189 (574)
+...+...++|+|......+ ....+ .+.++....+..+++.+...|-++++++..+.. .+....+.+++.+
T Consensus 70 ~~~~l~~~~ipvV~~~~~~~---~~~~~---~v~~d~~~~~~~~~~~l~~~g~~~i~~l~~~~~~~~~~~~r~~gf~~~~ 143 (268)
T cd06298 70 HREEFKRSPTPVVLAGSVDE---DNELP---SVNIDYKKAAFEATELLIKNGHKKIAFISGPLEDSINGDERLAGYKEAL 143 (268)
T ss_pred HHHHHhcCCCCEEEEccccC---CCCCC---EEEECcHHHHHHHHHHHHHcCCceEEEEeCCcccccchhHHHHHHHHHH
Confidence 34455667999998754321 11122 345566667777888877778899999975433 4566778889999
Q ss_pred hhcCcEEEEEeecCCCCChhhHHHHHHHhhcCC-CeEEEEEeChHHHHHHHHHHHHCCCCCCCe
Q 008205 190 AEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMM-SRILILHTYDIWGLEVLNAAKHLRMMESGY 252 (574)
Q Consensus 190 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~-~~viil~~~~~~~~~il~~a~~~gm~~~~~ 252 (574)
++.|+.+..........+.......++++.... .+.|+. ++...+..+++++++.|+..++-
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~~-~~d~~a~~~~~~l~~~g~~vp~d 206 (268)
T cd06298 144 SEANIEFDESLIFEGDYTYESGYELAEELLEDGKPTAAFV-TDDELAIGILNAAQDAGLKVPED 206 (268)
T ss_pred HHcCCCCCHHHeEeCCCChhHHHHHHHHHhcCCCCCEEEE-cCcHHHHHHHHHHHHcCCCCccc
Confidence 888865321111111112222334455554443 455544 45566778999999999865443
No 124
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=97.86 E-value=0.0022 Score=61.45 Aligned_cols=198 Identities=12% Similarity=0.008 Sum_probs=111.5
Q ss_pred EEEEeccCC-ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHHH
Q 008205 35 IGAVFALNS-TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHLV 113 (574)
Q Consensus 35 IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 113 (574)
||++.|... .+-.....+++-|.++ . |+++ .+.+...++.........+...++.++|......... .
T Consensus 2 i~~v~~~~~~~~~~~~~~~i~~~~~~----~----g~~~--~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~-~ 70 (267)
T cd06284 2 ILVLVPDIANPFFSEILKGIEDEARE----A----GYGV--LLGDTRSDPEREQEYLDLLRRKQADGIILLDGSLPPT-A 70 (267)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHH----c----CCeE--EEecCCCChHHHHHHHHHHHHcCCCEEEEecCCCCHH-H
Confidence 788887642 2222344455554444 1 4544 4556666666555555667777898877633221211 2
Q ss_pred HHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcC--CCCcchHHHHHHHHhh
Q 008205 114 SHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD--DHGRNGIAALGDKLAE 191 (574)
Q Consensus 114 a~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~--~~g~~~~~~l~~~~~~ 191 (574)
.... ..++|+|......+ . +....+..+....+..+++.+...|.++++++..+. ..+....+.|++.+++
T Consensus 71 ~~~~-~~~ipvv~~~~~~~---~---~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~l~~~~~~~~~~~r~~gf~~~~~~ 143 (267)
T cd06284 71 LTAL-AKLPPIVQACEYIP---G---LAVPSVSIDNVAAARLAVDHLISLGHRRIALITGPRDNPLARDRLEGYRQALAE 143 (267)
T ss_pred HHHH-hcCCCEEEEecccC---C---CCcceEEecccHHHHHHHHHHHHcCCceEEEEcCCccchhHHHHHHHHHHHHHH
Confidence 2333 34999997632211 1 122334556666778888887778999999997542 3455677888889988
Q ss_pred cCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCC
Q 008205 192 KRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESG 251 (574)
Q Consensus 192 ~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~ 251 (574)
.++.+..........+..+....++++.+. ..+.|+. .+...+..+++++++.|+..++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~~~~a~g~~~al~~~g~~~p~ 204 (267)
T cd06284 144 AGLPADEELIQEGDFSLESGYAAARRLLALPDRPTAIFC-FSDEMAIGAISALKELGLRVPE 204 (267)
T ss_pred cCCCCCcceEEeCCCChHHHHHHHHHHHhCCCCCcEEEE-cCcHHHHHHHHHHHHcCCCCcc
Confidence 875432111111111222333444444322 3444444 4556677888999998875443
No 125
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=97.82 E-value=0.0062 Score=58.62 Aligned_cols=206 Identities=15% Similarity=0.033 Sum_probs=115.4
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEE-cCCChHHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAII-GPQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii-Gp~~s~~~~ 111 (574)
+||+++|.. ..+-.....++..+.+++ |..+.+.+.++..++..-.+....++.+++.+|| .|.......
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~~~~~~~ 72 (271)
T cd06321 1 KIGVSVGDLGNPFFVALAKGAEAAAKKL--------NPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAVDSKGIA 72 (271)
T ss_pred CeEEEecccCCHHHHHHHHHHHHHHHHh--------CCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCCChhHhH
Confidence 488999864 222234455555555553 1234555555656665545555666777777654 444333222
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEcCC-CCcchHHHHHHH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVDDD-HGRNGIAALGDK 188 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~--~W~~v~ii~~~~~-~g~~~~~~l~~~ 188 (574)
.....+...++|+|......+ . . ...+..+....+..+++.+... |.++++++..... ......+.+++.
T Consensus 73 ~~i~~~~~~~ipvv~~~~~~~---~-~---~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~g~~~~~~~~R~~g~~~~ 145 (271)
T cd06321 73 PAVKRAQAAGIVVVAVDVAAE---G-A---DATVTTDNVQAGEISCQYLADRLGGKGNVAILNGPPVSAVLDRVAGCKAA 145 (271)
T ss_pred HHHHHHHHCCCeEEEecCCCC---C-c---cceeeechHHHHHHHHHHHHHHhCCCceEEEEeCCCCchHHHHHHHHHHH
Confidence 333444567999999754322 1 1 1245667777777788877666 9999999975432 234556778888
Q ss_pred Hhhc-CcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeC
Q 008205 189 LAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD 258 (574)
Q Consensus 189 ~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~ 258 (574)
+++. +++..... .....+...-...++++-+. ..+.| ++.+...+..+++++++.|+ .+..++..+
T Consensus 146 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~g~~~al~~~g~--~di~v~g~d 214 (271)
T cd06321 146 LAKYPGIKLLSDD-QNGKGSRDGGLRVMQGLLTRFPKLDGV-FAINDPTAIGADLAAKQAGR--NDIKITSVD 214 (271)
T ss_pred HHhCCCcEEEeee-cCCCCChhhHHHHHHHHHHhCCCCCEE-EECCchhHHHHHHHHHHcCC--CCcEEEEec
Confidence 8877 56432111 11111212222344444322 34543 34455667788899999987 344555443
No 126
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=97.81 E-value=0.002 Score=61.85 Aligned_cols=202 Identities=12% Similarity=0.088 Sum_probs=114.7
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 112 (574)
.||+++|.. ..+-.....+++.+.++. |+++ .+.++..++..-.+.+.+++++++.++|...+......
T Consensus 1 ~I~vi~~~~~~~~~~~~~~g~~~~a~~~--------g~~~--~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~ 70 (268)
T cd06289 1 TIGLVINDLTNPFFAELAAGLEEVLEEA--------GYTV--FLANSGEDVERQEQLLSTMLEHGVAGIILCPAAGTSPD 70 (268)
T ss_pred CEEEEecCCCcchHHHHHHHHHHHHHHc--------CCeE--EEecCCCChHHHHHHHHHHHHcCCCEEEEeCCCCccHH
Confidence 378898764 222234555665555542 3544 34455556655556667777788888877544332222
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHHHHHh
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLA 190 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~~ 190 (574)
....+...++|+|......+ +...+ .+.++....+..+++.+...|-++++++..+.. ......+.+.+.++
T Consensus 71 ~~~~~~~~~ipvV~~~~~~~---~~~~~---~v~~d~~~~~~~~~~~l~~~g~~~i~~l~~~~~~~~~~~r~~gf~~~l~ 144 (268)
T cd06289 71 LLKRLAESGIPVVLVAREVA---GAPFD---YVGPDNAAGARLATEHLISLGHRRIAFIGGLEDSSTRRERLAGYRAALA 144 (268)
T ss_pred HHHHHHhcCCCEEEEeccCC---CCCCC---EEeecchHHHHHHHHHHHHCCCCCEEEecCCccccchHHHHHHHHHHHH
Confidence 44556778999998743221 11122 244556666777778777778899999874432 34556788888888
Q ss_pred hcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCe
Q 008205 191 EKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGY 252 (574)
Q Consensus 191 ~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~ 252 (574)
+.+..+.....+....+.......++.+-.. ..+.|+ +.+...+..+++++++.|+..++-
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~-~~~~~~a~~~~~al~~~g~~~p~d 207 (268)
T cd06289 145 EAGLPFDSELVVEGPPSRQGGAEAVAQLLDLPPRPTAIV-CFNDLVAFGAMSGLRRAGLTPGRD 207 (268)
T ss_pred HcCCCCCchhEEecCcchhhHHHHHHHHHcCCCCCCEEE-EcCcHHHHHHHHHHHHcCCCCCcc
Confidence 7774321111111111222223344443322 344433 445555777889999988765433
No 127
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=97.80 E-value=0.013 Score=58.18 Aligned_cols=209 Identities=14% Similarity=0.060 Sum_probs=107.0
Q ss_pred CCCeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCC
Q 008205 29 IPPVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQF 106 (574)
Q Consensus 29 ~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~ 106 (574)
..++.+||++.+.. ..+-.....++..+.++ .+ ++ .+.+.++..+.....+....+..+++.+||= |..
T Consensus 21 ~~~~~~Igvv~~~~~~~f~~~~~~gi~~~a~~---~g----~~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 91 (330)
T PRK15395 21 AAADTRIGVTIYKYDDNFMSVVRKAIEKDAKA---AP----DV--QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVD 91 (330)
T ss_pred hcCCceEEEEEecCcchHHHHHHHHHHHHHHh---cC----Ce--EEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 35668899999753 21112333344333333 22 23 3344455555554445556677778887764 333
Q ss_pred hHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHH-Hc-----------CCeEEEEEEEc
Q 008205 107 SVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVD-YF-----------GWRNVIALYVD 174 (574)
Q Consensus 107 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~-~~-----------~W~~v~ii~~~ 174 (574)
+.........+...+||+|.+....+.-.-...+-...+..+...-+..+++++. +. |-.++++|...
T Consensus 92 ~~~~~~~l~~l~~~giPvV~vd~~~~~~~~~~~~~~~~V~~D~~~ag~~a~~~l~~~~~~~~~~~~~~~g~~~i~~i~g~ 171 (330)
T PRK15395 92 PAAAPTVIEKARGQDVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWKANPAWDLNKDGKIQYVLLKGE 171 (330)
T ss_pred HHHHHHHHHHHHHCCCcEEEEcCCccccccccccceeEEccChHHHHHHHHHHHHHHHhhccccccCCCCceEEEEEecC
Confidence 3323333344667899999975432110000112123355666666665555443 32 33344555433
Q ss_pred C--CCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC----CCeEEEEEeChHHHHHHHHHHHHCCC
Q 008205 175 D--DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM----MSRILILHTYDIWGLEVLNAAKHLRM 247 (574)
Q Consensus 175 ~--~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~----~~~viil~~~~~~~~~il~~a~~~gm 247 (574)
. .......+.+++.+++.|+.+..........+..+-...++++.+. ..+ .|++++...+..+++++++.|+
T Consensus 172 ~~~~~~~~R~~G~~~al~~~g~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~-ai~~~~d~~A~gvl~al~~~Gl 249 (330)
T PRK15395 172 PGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIE-VVIANNDAMAMGAVEALKAHNK 249 (330)
T ss_pred CCCchHHHHHHHHHHHHHhcCCCeeeeecccCCcCHHHHHHHHHHHHhhCcCCCee-EEEECCchHHHHHHHHHHhcCC
Confidence 2 2233467788888888887543321111111222223344444322 234 3445566677889999999887
No 128
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=97.76 E-value=0.016 Score=57.61 Aligned_cols=202 Identities=8% Similarity=-0.050 Sum_probs=114.7
Q ss_pred CCeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCC-h
Q 008205 30 PPVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQF-S 107 (574)
Q Consensus 30 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~-s 107 (574)
.+..+||++.|.. ..+......+++.+.++. |+.+. +.++..++..-.+....++++++.+||=... .
T Consensus 23 ~~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~--------g~~l~--i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~~~ 92 (330)
T PRK10355 23 AKEVKIGMAIDDLRLERWQKDRDIFVKKAESL--------GAKVF--VQSANGNEETQMSQIENMINRGVDVLVIIPYNG 92 (330)
T ss_pred CCCceEEEEecCCCchHHHHHHHHHHHHHHHc--------CCEEE--EECCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh
Confidence 4578999999854 333334455555555442 35444 4556556665556666777778888764332 2
Q ss_pred HHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC---CCcchHHH
Q 008205 108 VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD---HGRNGIAA 184 (574)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~---~g~~~~~~ 184 (574)
.........+...++|+|...... ... +....+.++....+..+++.|...|-++++++..... ......+.
T Consensus 93 ~~~~~~l~~~~~~~iPvV~id~~~---~~~--~~~~~V~~D~~~~g~~a~~~L~~~g~~~i~~i~~g~~~~~~~~~R~~g 167 (330)
T PRK10355 93 QVLSNVIKEAKQEGIKVLAYDRMI---NNA--DIDFYISFDNEKVGELQAKALVDKVPQGNYFLMGGSPVDNNAKLFRAG 167 (330)
T ss_pred hhHHHHHHHHHHCCCeEEEECCCC---CCC--CccEEEecCHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCccHHHHHHH
Confidence 222233355567789999874321 111 1223577788888888888887777788776653221 23445667
Q ss_pred HHHHHhhc---C-cEEEEEeecCCCCChhhHHHHHHHhh-c--CCCeEEEEEeChHHHHHHHHHHHHCCCC
Q 008205 185 LGDKLAEK---R-CRLSHKVPLSPKGSRNQIIDTLLTVS-S--MMSRILILHTYDIWGLEVLNAAKHLRMM 248 (574)
Q Consensus 185 l~~~~~~~---g-~~v~~~~~~~~~~~~~~~~~~l~~ik-~--~~~~viil~~~~~~~~~il~~a~~~gm~ 248 (574)
+++.++++ + +.+....... ..+..+-...++++- . ..++ .|++.+...+..+++.++++|+.
T Consensus 168 f~~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~lL~~~~~~~~-aI~~~nD~~A~g~l~al~~~g~~ 236 (330)
T PRK10355 168 QMKVLKPYIDSGKIKVVGDQWVD-GWLPENALKIMENALTANNNKID-AVVASNDATAGGAIQALSAQGLS 236 (330)
T ss_pred HHHHHhhhccCCCeEEecccCCC-CCCHHHHHHHHHHHHHhCCCCcc-EEEECCCchHHHHHHHHHHCCCC
Confidence 77777653 3 4332111111 112222334444432 2 2344 44455667777899999999975
No 129
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=97.72 E-value=0.0051 Score=59.06 Aligned_cols=205 Identities=9% Similarity=-0.009 Sum_probs=113.5
Q ss_pred EEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHHH
Q 008205 35 IGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHLV 113 (574)
Q Consensus 35 IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 113 (574)
||++.|.. ..+......++..+.++ .|+++. +.++..++..-.+....+..+++.+||=.........+
T Consensus 2 igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~ 71 (269)
T cd06275 2 IGMLVTTSTNPFFAEVVRGVEQYCYR--------QGYNLI--LCNTEGDPERQRSYLRMLAQKRVDGLLVMCSEYDQPLL 71 (269)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHH--------cCCEEE--EEeCCCChHHHHHHHHHHHHcCCCEEEEecCCCChHHH
Confidence 78898864 22333445555555544 145554 44555566555556667777777766532222222222
Q ss_pred HHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHHHHHhh
Q 008205 114 SHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLAE 191 (574)
Q Consensus 114 a~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~~~ 191 (574)
..+....++|+|......+ +..+++ +.......+..+++.+...|-++++++..... ......+.+++.+++
T Consensus 72 ~~l~~~~~ipvV~i~~~~~---~~~~~~---V~~d~~~~~~~~~~~l~~~G~~~i~~i~~~~~~~~~~~r~~gf~~~~~~ 145 (269)
T cd06275 72 AMLERYRHIPMVVMDWGPE---DDFADK---IQDNSEEGGYLATRHLIELGHRRIGCITGPLEKAPAQQRLAGFRRAMAE 145 (269)
T ss_pred HHHHhcCCCCEEEEecccC---CCCCCe---EeeCcHHHHHHHHHHHHHCCCceEEEEeCCCCCccHHHHHHHHHHHHHH
Confidence 3333456999998753221 112222 44455656677778877789999999974332 234566778888888
Q ss_pred cCcEEEEEeecCCCCChhhHHHHHHHhhcCC--CeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 192 KRCRLSHKVPLSPKGSRNQIIDTLLTVSSMM--SRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 192 ~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~--~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
.|+.+..........+.......++++.+.. .+ .|++++...+..+++.+++.|...++-+-++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-ai~~~~d~~a~g~~~~l~~~g~~vp~di~vv 211 (269)
T cd06275 146 AGLPVNPGWIVEGDFECEGGYEAMQRLLAQPKRPT-AVFCGNDLMAMGALCAAQEAGLRVPQDLSII 211 (269)
T ss_pred cCCCCCHHHhccCCCChHHHHHHHHHHHcCCCCCc-EEEECChHHHHHHHHHHHHcCCCCCcceEEE
Confidence 8765431111111112223334455543332 34 3444556667788899999887655444443
No 130
>COG0834 HisJ ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms]
Probab=97.71 E-value=5.1e-05 Score=73.39 Aligned_cols=84 Identities=18% Similarity=0.167 Sum_probs=63.1
Q ss_pred CceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhcccccccccc
Q 008205 470 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKIF 549 (574)
Q Consensus 470 ~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~~ 549 (574)
..++|++... ..+|+.....+...+.||.||+++++++.++.....+++.. .|++++..|..|++|+.
T Consensus 34 ~~~~v~~~~~-~~~p~~~~~~~~~~~~G~dvdl~~~ia~~l~~~~~~~~~~~-------~~~~~~~~l~~g~~D~~---- 101 (275)
T COG0834 34 GKLRVGTEAT-YAPPFEFLDAKGGKLVGFDVDLAKAIAKRLGGDKKVEFVPV-------AWDGLIPALKAGKVDII---- 101 (275)
T ss_pred CeEEEEecCC-CCCCcccccCCCCeEEeeeHHHHHHHHHHhCCcceeEEecc-------chhhhhHHHhcCCcCEE----
Confidence 4466666532 23354443333358999999999999999887522456666 99999999999999999
Q ss_pred cceeeeEEEEeeCceeeec
Q 008205 550 FNLVILFAILANGGFLVPC 568 (574)
Q Consensus 550 ~~~~~~~~~~~~~~~~v~f 568 (574)
++++++|+||...++|
T Consensus 102 ---~~~~~~t~er~~~~~f 117 (275)
T COG0834 102 ---IAGMTITPERKKKVDF 117 (275)
T ss_pred ---EeccccCHHHhccccc
Confidence 9999999998755555
No 131
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=97.71 E-value=0.024 Score=54.26 Aligned_cols=194 Identities=12% Similarity=0.053 Sum_probs=111.0
Q ss_pred EEEEeccCCc-cchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCChHHHHH
Q 008205 35 IGAVFALNST-IGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVIAHL 112 (574)
Q Consensus 35 IG~l~~~~~~-~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~~ 112 (574)
||+++|.... +-.....++..+.+. .|+++ .+.++..++....+...+++++++.++|- |........
T Consensus 2 i~~~~~~~~~~~~~~~~~~i~~~~~~--------~g~~~--~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~ 71 (267)
T cd06322 2 IGASLLTQQHPFYIELANAMKEEAKK--------QKVNL--IVSIANQDLNKQLSDVEDFITKKVDAIVLSPVDSKGIRA 71 (267)
T ss_pred eeEeecCcccHHHHHHHHHHHHHHHh--------cCCEE--EEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhhHH
Confidence 7888876521 112233344333332 14444 44566566666666677778888888765 444332223
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEcC-CCCcchHHHHHHHH
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVDD-DHGRNGIAALGDKL 189 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~--~W~~v~ii~~~~-~~g~~~~~~l~~~~ 189 (574)
....+...+||+|......+ ....+..+.+.....+...++.+... |-+++++++..+ .......+.+++.+
T Consensus 72 ~~~~~~~~~ipvV~~~~~~~-----~~~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~ 146 (267)
T cd06322 72 AIAKAKKAGIPVITVDIAAE-----GVAVVSHVATDNYAGGVLAGELAAKVLNGKGQVAIIDYPTVQSVVDRVRGFKEAL 146 (267)
T ss_pred HHHHHHHCCCCEEEEcccCC-----CCceEEEEecChHHHHHHHHHHHHHHhCCCceEEEEecCCCccHHHHHHHHHHHH
Confidence 33445678999998743211 11223446666666777777776654 778999997432 22345667888888
Q ss_pred hhc-CcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCC
Q 008205 190 AEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRM 247 (574)
Q Consensus 190 ~~~-g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm 247 (574)
++. |+.+... .. ..+.++....++++... +.+ .|+..+...+..+++.+.+.|+
T Consensus 147 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~~l~~~~~~~-ai~~~~d~~a~~~~~al~~~g~ 203 (267)
T cd06322 147 ADYPNIKIVAV--QP-GITRAEALTAAQNILQANPDLD-GIFAFGDDAALGAVSAIKAAGR 203 (267)
T ss_pred HhCCCcEEEEe--cC-CCChHHHHHHHHHHHHhCCCCC-EEEEcCCcHHHHHHHHHHHCCC
Confidence 888 8765322 11 11222233334444322 344 3444555667788899999887
No 132
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=97.70 E-value=0.0037 Score=60.06 Aligned_cols=205 Identities=13% Similarity=0.059 Sum_probs=116.5
Q ss_pred EEEEEeccC--CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHH
Q 008205 34 NIGAVFALN--STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~--~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~ 111 (574)
.||+++|.. ..+......++..+.++ .|+.+ .+.++..+...-.+....+...++.+||........
T Consensus 1 ~ig~v~~~~~~~~~~~~~~~~i~~~~~~--------~g~~~--~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~~- 69 (269)
T cd06288 1 TIGLISDEIATTPFAVEIILGAQDAARE--------HGYLL--LVVNTGGDDELEAEAVEALLDHRVDGIIYATMYHRE- 69 (269)
T ss_pred CeEEEeCCCCCCccHHHHHHHHHHHHHH--------CCCEE--EEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCh-
Confidence 389999874 32333445555555544 14554 344444455444455566777788887764332111
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHHHHH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKL 189 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~ 189 (574)
+.......++|+|......+. .. +..+.+++...+..+++.+...|-++++++..... ......+.+.+.+
T Consensus 70 -~~~~~~~~~ipvv~~~~~~~~---~~---~~~v~~d~~~~~~~a~~~l~~~g~~~i~~l~~~~~~~~~~~R~~gf~~~~ 142 (269)
T cd06288 70 -VTLPPELLSVPTVLLNCYDAD---GA---LPSVVPDEEQGGYDATRHLLAAGHRRIAFINGEPWMLAAKDRLKGYRQAL 142 (269)
T ss_pred -hHHHHHhcCCCEEEEecccCC---CC---CCeEEEccHHHHHHHHHHHHHcCCceEEEEeCCccchhHHHHHHHHHHHH
Confidence 112234568999986433221 11 23455677777788888777779999999975432 2345677888888
Q ss_pred hhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEe
Q 008205 190 AEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVT 257 (574)
Q Consensus 190 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~ 257 (574)
++.++.+..........+..+....++++.+. +.+.| ++++...+..+++++++.|+..++-+.+++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~~~~~~l~~~g~~vp~di~v~g 211 (269)
T cd06288 143 AEAGIPFDPDLVVHGDWSADDGYEAAAALLDLDDRPTAI-FCGNDRMAMGAYQALLERGLRIPQDVSVVG 211 (269)
T ss_pred HHcCCCCCHHHeEeCCCChHHHHHHHHHHHhCCCCCCEE-EEeCcHHHHHHHHHHHHcCCCCcccceEEe
Confidence 88875432111111111222233444454333 34544 445667777889999999986555555544
No 133
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=97.70 E-value=0.016 Score=56.14 Aligned_cols=212 Identities=12% Similarity=0.001 Sum_probs=111.8
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC--CHHHHHHHHHHhHhcCcEEEEcCCChH-HH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNY--SRFLGMVEALTLLENETVAIIGPQFSV-IA 110 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~--~~~~a~~~~~~l~~~~v~aiiGp~~s~-~~ 110 (574)
+||+++|.... ......+.-++++.=+.. |+++.+...++.. ++..-.+....++++++.+||=...+. ..
T Consensus 1 ~Igvi~~~~~~--~~~~~~~~~~i~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIv~~~~~~~~ 74 (280)
T cd06303 1 KIAVIYPGQQI--SDYWVRNIASFTARLEEL----NIPYELTQFSSRPGIDHRLQSQQLNEALQSKPDYLIFTLDSLRHR 74 (280)
T ss_pred CeeEEecCccH--HHHHHHHHHHHHHHHHHc----CCcEEEEEeccCcccCHHHHHHHHHHHHHcCCCEEEEcCCchhhH
Confidence 48999986310 112222222332222221 4566665444322 444444555567778888877533322 22
Q ss_pred HHHHHhhccCCccEEeccc-CCCCcCCCCCCceEEecCChHHHHHHHHHHHHH--cCCeEEEEEEEcC-CCCcchHHHHH
Q 008205 111 HLVSHIANEFQVPLLSFAA-TDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDY--FGWRNVIALYVDD-DHGRNGIAALG 186 (574)
Q Consensus 111 ~~va~~~~~~~iP~Is~~~-~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~--~~W~~v~ii~~~~-~~g~~~~~~l~ 186 (574)
..+.. +...++|.|.... ..+.......+..-.+.+....-+..+++.+.. .|.++++++.... .......+.++
T Consensus 75 ~~~~~-l~~~~~p~V~i~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~g~~~i~~l~~~~~~~~~~R~~gf~ 153 (280)
T cd06303 75 KLIER-VLASGKTKIILQNITTPVKAWLKHQPLLYVGFDHAAGARLLADYFIKRYPNHARYAMLYFSPGYISTARGDTFI 153 (280)
T ss_pred HHHHH-HHhCCCCeEEEeCCCCCccccccCCCceEeCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCcchhHHHHHHH
Confidence 33444 3345777666422 222100000122344566777777778887666 7899999997533 22345667888
Q ss_pred HHHhhc-CcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 187 DKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 187 ~~~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
+.+++. ++.+... .....+..+....++++.+. +.+ .|++++...+.-+++++++.|+. .+...+.
T Consensus 154 ~al~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~-ai~~~nd~~A~g~l~al~~~G~~-~dv~vvg 222 (280)
T cd06303 154 DCVHARNNWTLTSE--FYTDATRQKAYQATSDILSNNPDVD-FIYACSTDIALGASDALKELGRE-DDILING 222 (280)
T ss_pred HHHHhCCCceEEEe--ecCCCCHHHHHHHHHHHHHhCCCCc-EEEECCcHHHHHHHHHHHHcCCC-CCcEEEe
Confidence 888887 6654321 22122323333444444333 234 44455667777899999999985 3444443
No 134
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=97.70 E-value=5.2e-05 Score=89.23 Aligned_cols=84 Identities=11% Similarity=0.052 Sum_probs=67.3
Q ss_pred CCceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhccccccccc
Q 008205 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKI 548 (574)
Q Consensus 469 ~~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~ 548 (574)
.++++|++.. .++|+......+.+++||.+|+++.|++.+|.+ ++++... +|++++..|.+|++|++
T Consensus 55 ~~~l~vgv~~--~~~p~~~~~~~~g~~~G~~~D~l~~ia~~lG~~--~e~v~~~------~~~~~l~~l~~g~iDl~--- 121 (1197)
T PRK09959 55 KKNLVIAVHK--SQTATLLHTDSQQRVRGINADYLNLLKRALNIK--LTLREYA------DHQKAMDALEEGEVDIV--- 121 (1197)
T ss_pred CCeEEEEecC--CCCCCceeecCCCccceecHHHHHHHHHhcCCc--eEEEeCC------CHHHHHHHHHcCCCcEe---
Confidence 4568888854 343433222235679999999999999999999 9998763 89999999999999998
Q ss_pred ccceeeeEEEEeeCc----eeeecc
Q 008205 549 FFNLVILFAILANGG----FLVPCR 569 (574)
Q Consensus 549 ~~~~~~~~~~~~~~~----~~v~f~ 569 (574)
.+.++++++|. |+-||+
T Consensus 122 ----~~~~~~~~~r~~~~~fs~py~ 142 (1197)
T PRK09959 122 ----LSHLVASPPLNDDIAATKPLI 142 (1197)
T ss_pred ----cCccccccccccchhcCCCcc
Confidence 88899999998 777755
No 135
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=97.67 E-value=0.0068 Score=58.11 Aligned_cols=204 Identities=15% Similarity=0.078 Sum_probs=112.6
Q ss_pred EEEEeccCC-ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHHH
Q 008205 35 IGAVFALNS-TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHLV 113 (574)
Q Consensus 35 IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 113 (574)
||++.|... ..-.....++..+.+.. |+++.+ .+...++..-.+....++.+++.+||-....... ..
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~-~~ 70 (268)
T cd01575 2 VAVLVPSLSNSVFADVLQGISDVLEAA--------GYQLLL--GNTGYSPEREEELLRTLLSRRPAGLILTGLEHTE-RT 70 (268)
T ss_pred EEEEeCCCcchhHHHHHHHHHHHHHHc--------CCEEEE--ecCCCCchhHHHHHHHHHHcCCCEEEEeCCCCCH-HH
Confidence 788988642 22223344554444441 455444 4444444444455566777788877653222122 23
Q ss_pred HHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHHHHHhh
Q 008205 114 SHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLAE 191 (574)
Q Consensus 114 a~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~~~ 191 (574)
...+...++|+|......+ . +....+.......+..+++.+...|-++++++..... ......+.+++.+++
T Consensus 71 ~~~~~~~~ipvv~~~~~~~---~---~~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~l~~ 144 (268)
T cd01575 71 RQLLRAAGIPVVEIMDLPP---D---PIDMAVGFSHAEAGRAMARHLLARGYRRIGFLGARMDDTRAQQRLEGFRAALRA 144 (268)
T ss_pred HHHHHhcCCCEEEEecCCC---C---CCCCeEEeCcHHHHHHHHHHHHHCCCCcEEEecCCCCcccHHHHHHHHHHHHHH
Confidence 3345567999998643211 1 1122344566667777888888889999999986542 334556778888888
Q ss_pred cCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 192 KRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 192 ~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
.|.............+.......++++.+. ..+.|+ .++...+..+++.+.+.|...++.+-++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~~~~~~l~~~g~~~p~di~vi 210 (268)
T cd01575 145 AGLDPPLVVTTPEPSSFALGRELLAELLARWPDLDAVF-CSNDDLALGALFECQRRGISVPEDIAIA 210 (268)
T ss_pred cCCCCCceeEeccCCCHHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHHhCCCCCcceEEE
Confidence 775322111111112223334445554333 345444 4555667788999999887555444333
No 136
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=97.66 E-value=0.032 Score=55.24 Aligned_cols=213 Identities=14% Similarity=0.090 Sum_probs=126.7
Q ss_pred CeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEE-cCCChHH
Q 008205 31 PVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAII-GPQFSVI 109 (574)
Q Consensus 31 ~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii-Gp~~s~~ 109 (574)
...+||++.+... .....++..++++--+.- |....+...+...|+..-.+.+.+++.+++.+|+ .|.++..
T Consensus 32 ~~~~i~~~~~~~~---~~f~~~~~~g~~~~a~~~----g~~~~~~~~~~~~d~~~Q~~~i~~~ia~~~daIiv~~~d~~~ 104 (322)
T COG1879 32 AGKTIGVVVPTLG---NPFFQAVRKGAEAAAKKL----GVVVAVVIADAQNDVAKQIAQIEDLIAQGVDAIIINPVDPDA 104 (322)
T ss_pred cCceEEEEeccCC---ChHHHHHHHHHHHHHHHc----CCcEEEEecccccChHHHHHHHHHHHHcCCCEEEEcCCChhh
Confidence 3378999987653 345555555555544333 2245666777778888888888899989997755 6888888
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH-HHcC-CeEEEEEEEcC--CCCcchHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV-DYFG-WRNVIALYVDD--DHGRNGIAAL 185 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll-~~~~-W~~v~ii~~~~--~~g~~~~~~l 185 (574)
......-+...+||+|.+....+.- ......+.......+...++.+ ++++ .-++.++.... .......+.+
T Consensus 105 ~~~~v~~a~~aGIpVv~~d~~~~~~----~~~~~~vg~dn~~~G~~~a~~l~~~~~~~g~v~~~~g~~~~~~~~~R~~G~ 180 (322)
T COG1879 105 LTPAVKKAKAAGIPVVTVDSDIPGP----GDRVAYVGSDNYKAGRLAAEYLAKALGGKGKVVVLVGSPGNSSAEERVKGF 180 (322)
T ss_pred hHHHHHHHHHCCCcEEEEecCCCCC----CceeEEEecCcHHHHHHHHHHHHHHhCCCCeEEEEecCCCCchHHHHHhhH
Confidence 8888888899999999975443221 1233334445555666666665 3343 24466666433 2344567788
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC-hHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
++.+.+.+..+........+.+...-.+....+-...+++-.+++. ...+.-..++++..|... .++++
T Consensus 181 ~~~l~~~~~~~~v~~~~~~~~~~~~a~~~~~~~L~~~pdi~~i~~~~d~~a~ga~~A~~~~g~~~--~v~v~ 250 (322)
T COG1879 181 RDALKEHPPDIEVVDVQTGDWDRDKALEVMEDLLAANPDIDGIYAANDGMALGAIQALKAAGRKG--DVVVV 250 (322)
T ss_pred HHHHHhCCCcEEEeeccCCcccHHHHHHHHHHHHHhCCCceEEEECCchhHHHHHHHHHHcCCCC--ceEEE
Confidence 8888887642222222221223333344555555555566555543 444545556666777654 34444
No 137
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=97.66 E-value=0.019 Score=56.27 Aligned_cols=208 Identities=11% Similarity=0.051 Sum_probs=110.5
Q ss_pred EEEEEeccCC-ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEE-cCCChHHHH
Q 008205 34 NIGAVFALNS-TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAII-GPQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii-Gp~~s~~~~ 111 (574)
+||++.|... .+-.....++.-+.+.+ + ..+.+.+.+...++..-.+....++..++.+|| .|..+....
T Consensus 1 ~Igviv~~~~~~~~~~~~~gi~~~a~~~---~-----~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~~~~~~ 72 (303)
T cd01539 1 KIGVFLYKFDDTFISLVRKNLEDIQKEN---G-----GKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVDPTAAQ 72 (303)
T ss_pred CeEEEeeCCCChHHHHHHHHHHHHHHhh---C-----CCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhHH
Confidence 5899988642 22123344455444443 1 224555566666776656666677888888755 454444334
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHc--CCe---------E--EEEEEEcCC--
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF--GWR---------N--VIALYVDDD-- 176 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~--~W~---------~--v~ii~~~~~-- 176 (574)
.....+...+||+|......+...-...+-+..+.++....+...++++... +-+ + ++++..+..
T Consensus 73 ~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~a~~l~~~~~~~~~~~~~~~~g~~~i~~~~g~~~~~ 152 (303)
T cd01539 73 TVINKAKQKNIPVIFFNREPEEEDIKSYDKAYYVGTDAEQSGILQGKLIADYWNANKDALDKNGDGIIQYVMLKGEPGHP 152 (303)
T ss_pred HHHHHHHHCCCCEEEeCCCCcccccccccccceeeecHHHHHHHHHHHHHHHhhccccccccCCCCceEEEEEEcCCCCc
Confidence 4445567789999987543211100111223446666666667777766443 221 2 344543322
Q ss_pred CCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHh-hcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCC
Q 008205 177 HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTV-SSM--MSRILILHTYDIWGLEVLNAAKHLRMMES 250 (574)
Q Consensus 177 ~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i-k~~--~~~viil~~~~~~~~~il~~a~~~gm~~~ 250 (574)
......+.+++.+++.++.+..........+.......++++ +.. ..+. |++.+...+..+++++++.|...+
T Consensus 153 ~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~a-i~~~~d~~a~g~~~al~~~g~~~p 228 (303)
T cd01539 153 DAIARTKYSIETLNDAGIKTEELASDTANWDRAQAKDKMDALLLKYGDKIEA-VIANNDAMALGAIEALQKYGYNKG 228 (303)
T ss_pred hhhhhhhhHHHHHHhcCCCeEEEEeecCCCCHHHHHHHHHHHHHhcCCCccE-EEECCchHHHHHHHHHHHcCCCcC
Confidence 223456778888988876543221122112222333344443 332 2443 334455566678888888887654
No 138
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=97.64 E-value=0.016 Score=56.24 Aligned_cols=212 Identities=10% Similarity=0.029 Sum_probs=114.3
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCChHHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 111 (574)
+||+++|.. ..+-.....++..+.++ .|+++. +.+.. ++..-.+....++..++.+||= |..+....
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~--~~~~~-~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~ 69 (289)
T cd01540 1 KIGFIVKQPEEPWFQTEWKFAKKAAKE--------KGFTVV--KIDVP-DGEKVLSAIDNLGAQGAKGFVICVPDVKLGP 69 (289)
T ss_pred CeeeecCCCCCcHHHHHHHHHHHHHHH--------cCCEEE--EccCC-CHHHHHHHHHHHHHcCCCEEEEccCchhhhH
Confidence 488888754 22223445555555554 245544 44554 5555455556677778877664 33333334
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHH----HcCC--eEEEEEEE-cC--CCCcchH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVD----YFGW--RNVIALYV-DD--DHGRNGI 182 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~----~~~W--~~v~ii~~-~~--~~g~~~~ 182 (574)
.....+...+||+|......+.......+.+-.+..+....+...++.+. ..|| ++++++.. .. .......
T Consensus 70 ~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~~~g~~~~~i~~i~~~~~~~~~~~~R~ 149 (289)
T cd01540 70 AIVAKAKAYNMKVVAVDDRLVDADGKPMEDVPHVGMSATKIGEQVGEAIADEMKKRGWDPKEVGALRITYDELDTAKPRT 149 (289)
T ss_pred HHHHHHHhCCCeEEEecCCCcccCCCccccceEecCCHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCcchhhHH
Confidence 44566778999999874332111000112223355566666666655443 4677 78888752 22 2445677
Q ss_pred HHHHHHHhhcCcEEEEEeecCCC-CChhhHHHHHHHhhcC--CCeE-EEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 183 AALGDKLAEKRCRLSHKVPLSPK-GSRNQIIDTLLTVSSM--MSRI-LILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 183 ~~l~~~~~~~g~~v~~~~~~~~~-~~~~~~~~~l~~ik~~--~~~v-iil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
+.+++.+++.|+........... .+...-...++++... ..+. .|++.+...+..++.++.+.|+...+...+.
T Consensus 150 ~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~d~~a~g~~~al~~~g~~~~di~vig 227 (289)
T cd01540 150 DGALEALKAPGFPEANIFQAPQKTTDTEGAFDAAASTLTKNPNVKNWIIYGLNDETVLGAVRATEQSGIAAADVIGVG 227 (289)
T ss_pred HHHHHHHhcCCCCcceEecccccCcchhhHHHHHHHHHHhCCCcCeeEEEeCCcHHHHHHHHHHHHcCCCCcceEEEe
Confidence 88899998877643211111111 1122223344444322 3343 4555666778888999999998633444443
No 139
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=97.63 E-value=0.03 Score=53.92 Aligned_cols=201 Identities=11% Similarity=0.025 Sum_probs=112.2
Q ss_pred EEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCChHH-HH
Q 008205 35 IGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVI-AH 111 (574)
Q Consensus 35 IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~-~~ 111 (574)
||++.|.. ..+-.....+++.+.++..... .| +.+.+.+...++....+....++.+++.+||- |..... ..
T Consensus 2 Ig~i~~~~~~~f~~~~~~gi~~~a~~~~~~~---~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~~~~~~~~~~ 76 (274)
T cd06311 2 IGVSIPAADHGWTAGIVWHAQAAAKKLEAAY---PD--VEFILVTASNDTEQQNAQQDLLINRKIDALVILPFESAPLTQ 76 (274)
T ss_pred eeeeccCCCCcHHHHHHHHHHHHHHHhhhhC---CC--eEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHH
Confidence 78887653 2222344555655555543322 23 45556666666655545555577777877663 444333 23
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEcCC-CCcchHHHHHHH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVDDD-HGRNGIAALGDK 188 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~--~W~~v~ii~~~~~-~g~~~~~~l~~~ 188 (574)
.+ ..+...+||+|......+ ... .....+.+.....+...++++... +-++++++..... ......+.+++.
T Consensus 77 ~i-~~~~~~gIpvV~~d~~~~---~~~-~~~~~V~~d~~~~g~~aa~~l~~~~~g~~~i~~~~g~~~~~~~~R~~gf~~~ 151 (274)
T cd06311 77 PV-AKAKKAGIFVVVVDRGLS---SPG-AQDLYVAGDNYGMGRVAGEYIATKLGGNGNIVVLRGIPTPIDNERVDAFDAA 151 (274)
T ss_pred HH-HHHHHCCCeEEEEcCCCC---CCc-ccceEEcCCcHHHHHHHHHHHHHHhCCCCeEEEEECCCCcchhHHHHHHHHH
Confidence 34 345678999998753211 110 112235666666777777876655 7889999974432 223456788888
Q ss_pred HhhcCcEEEEEeecCCCCChhhHHHHHHHh-hc-CCCeEEEEEeChHHHHHHHHHHHHCCCC
Q 008205 189 LAEKRCRLSHKVPLSPKGSRNQIIDTLLTV-SS-MMSRILILHTYDIWGLEVLNAAKHLRMM 248 (574)
Q Consensus 189 ~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i-k~-~~~~viil~~~~~~~~~il~~a~~~gm~ 248 (574)
+++.++++... .....+.......++++ +. .+.+.|+. .+...+..++.++++.|+.
T Consensus 152 l~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~ 210 (274)
T cd06311 152 IAKYPIKILDR--QYANWNRDDAFSVMQDLLTKFPKIDAVWA-HDDDMAVGVLAAIKQAGRT 210 (274)
T ss_pred HhhCCcEEEec--cCCCCcHHHHHHHHHHHHHhCCCcCEEEE-CCCcHHHHHHHHHHHcCCC
Confidence 88888655432 21112222233444443 22 23454433 3445567788888888864
No 140
>TIGR02285 conserved hypothetical protein. Members of this family are found in several Proteobacteria, including Pseudomonas putida KT2440, Bdellovibrio bacteriovorus HD100 (three members), Aeromonas hydrophila, and Chromobacterium violaceum ATCC 12472. The function is unknown.
Probab=97.63 E-value=8.3e-05 Score=71.63 Aligned_cols=80 Identities=15% Similarity=0.119 Sum_probs=64.6
Q ss_pred CCceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhC-CCCcCeEEEECCCCCCCCChHHHHHHhhhcccccccc
Q 008205 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELL-PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKK 547 (574)
Q Consensus 469 ~~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l-~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~ 547 (574)
.+++++++. .|+||... .++....||.+|+++++++.+ +++ ++++.. .|+.++..| .++.|++
T Consensus 17 ~~~l~~~~~---~~pPf~~~-~~~~~~~G~~~~i~~~i~~~~~~~~--~~~~~~-------pw~r~l~~l-~~~~d~~-- 80 (268)
T TIGR02285 17 KEAITWIVN---DFPPFFIF-SGPSKGRGVFDVILQEIRRALPQYE--HRFVRV-------SFARSLKEL-QGKGGVC-- 80 (268)
T ss_pred cceeEEEec---ccCCeeEe-CCCCCCCChHHHHHHHHHHHcCCCc--eeEEEC-------CHHHHHHHH-hcCCCeE--
Confidence 467787774 46666543 345578999999999999998 888 888877 899999999 8999988
Q ss_pred cccceeeeEEEEeeCc----eeeecc
Q 008205 548 IFFNLVILFAILANGG----FLVPCR 569 (574)
Q Consensus 548 ~~~~~~~~~~~~~~~~----~~v~f~ 569 (574)
+.++++|+||+ |+.|++
T Consensus 81 -----~~~~~~t~eR~~~~~Fs~P~~ 101 (268)
T TIGR02285 81 -----TVNLLRTPEREKFLIFSDPTL 101 (268)
T ss_pred -----EeeccCCcchhhceeecCCcc
Confidence 88899999998 777764
No 141
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=97.61 E-value=0.0084 Score=57.46 Aligned_cols=203 Identities=16% Similarity=0.101 Sum_probs=111.1
Q ss_pred EEEEeccC-----CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChH
Q 008205 35 IGAVFALN-----STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSV 108 (574)
Q Consensus 35 IG~l~~~~-----~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~ 108 (574)
||+++|.. ..+......++..+.++ .|+++.+...+. + ....+.+.+++.+ ++.+||...+..
T Consensus 2 igvi~p~~~~~~~~~~~~~~~~~i~~~~~~--------~g~~~~~~~~~~--~-~~~~~~~~~~~~~~~vdgiii~~~~~ 70 (268)
T cd06271 2 IGLVLPTGEREEGDPFFAEFLSGLSEALAE--------HGYDLVLLPVDP--D-EDPLEVYRRLVESGLVDGVIISRTRP 70 (268)
T ss_pred eEEEeCCcccccCCccHHHHHHHHHHHHHH--------CCceEEEecCCC--c-HHHHHHHHHHHHcCCCCEEEEecCCC
Confidence 78888862 22222333444333332 245555554332 2 2233445566544 688777533322
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHH
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALG 186 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~ 186 (574)
....+ ..+...++|+|......+ +..+++ +.+.....+..+++.+...|-++++++..... .+....+.++
T Consensus 71 ~~~~~-~~~~~~~ipvV~~~~~~~---~~~~~~---V~~d~~~~~~~a~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~ 143 (268)
T cd06271 71 DDPRV-ALLLERGFPFVTHGRTEL---GDPHPW---VDFDNEAAAYQAVRRLIALGHRRIALLNPPEDLTFAQHRRAGYR 143 (268)
T ss_pred CChHH-HHHHhcCCCEEEECCcCC---CCCCCe---EeeCcHHHHHHHHHHHHHcCCCcEEEecCccccchHHHHHHHHH
Confidence 22223 445678999998743221 122333 33556666777777777779999999974432 2345678888
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
+.+++.+..+.....+....+.......++++.+. ..+.|+ +.+...+..+++++.+.|+..++-+-|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vp~~i~ii 214 (268)
T cd06271 144 RALAEAGLPLDPALIVSGDMTEEGGYAAAAELLALPDRPTAIV-CSSELMALGVLAALAEAGLRPGRDVSVV 214 (268)
T ss_pred HHHHHhCCCCCCceEEeCCCChHHHHHHHHHHHhCCCCCCEEE-EcCcHHHHHHHHHHHHhCCCCCcceeEE
Confidence 89988876532111111112223333455554332 244444 4455677788999999998665544443
No 142
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=97.61 E-value=0.015 Score=55.75 Aligned_cols=205 Identities=13% Similarity=0.005 Sum_probs=113.8
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 112 (574)
+||+++|.. ..+-.....++.-+.++ .|+++.+. .+..++..-.+....+...++.+||--.+......
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~--------~gy~v~~~--~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~ 70 (269)
T cd06293 1 TIGLVVPDIANPFFAELADAVEEEADA--------RGLSLVLC--ATRNRPERELTYLRWLDTNHVDGLIFVTNRPDDGA 70 (269)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHHHHH--------CCCEEEEE--eCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHH
Confidence 388898753 22222344444444443 24655443 33345544444555666678888775332212223
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHHHHHh
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLA 190 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~~ 190 (574)
+..+. ..++|+|......+ +... -.+.+.+...+..+++.+...|-++++++..... ......+.+++.++
T Consensus 71 ~~~~~-~~~~pvV~i~~~~~---~~~~---~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~a~~ 143 (269)
T cd06293 71 LAKLI-NSYGNIVLVDEDVP---GAKV---PKVFCDNEQGGRLATRHLARAGHRRIAFVGGPDALISARERYAGYREALA 143 (269)
T ss_pred HHHHH-hcCCCEEEECCCCC---CCCC---CEEEECCHHHHHHHHHHHHHCCCceEEEEecCcccccHHHHHHHHHHHHH
Confidence 33333 34799998754322 1111 2355677777888888887889999999974433 23356688889998
Q ss_pred hcCcEEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 191 EKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 191 ~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~--~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
+.|..+..........+..+....+.++-+ ...+. |++++...+..+++.+.+.|...++-+-|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a-i~~~~d~~a~g~~~al~~~g~~vp~di~i~ 210 (269)
T cd06293 144 EAHIPEVPEYVCFGDYTREFGRAAAAQLLARGDPPTA-IFAASDEIAIGLLEVLRERGLSIPGDMSLV 210 (269)
T ss_pred HcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCCE-EEEcCcHHHHHHHHHHHHcCCCCccceEEE
Confidence 887643211111111222233344554432 23454 444566667788999999997655544444
No 143
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=97.61 E-value=0.0099 Score=56.68 Aligned_cols=200 Identities=16% Similarity=0.091 Sum_probs=118.7
Q ss_pred EEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHHH
Q 008205 35 IGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHLV 113 (574)
Q Consensus 35 IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 113 (574)
||+++|.- +..-.....+++.+.++ .|+++. +.++..++..-.....+++.+++.++|....... ..+
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~--~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~~~~-~~~ 70 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYE--------NGYQML--LMNTNFSIEKEIEALELLARQKVDGIILLATTIT-DEH 70 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHH--------CCCEEE--EEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHH
Confidence 78888753 22223455666655554 245554 4455556666566677788888888886433222 234
Q ss_pred HHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcC-C--CCcchHHHHHHHHh
Q 008205 114 SHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD-D--HGRNGIAALGDKLA 190 (574)
Q Consensus 114 a~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~-~--~g~~~~~~l~~~~~ 190 (574)
...+...++|+|......+ . ...+.++....+..+++.+...|-++++++.... . .+....+.+++.++
T Consensus 71 ~~~~~~~~ipvv~~~~~~~-----~---~~~v~~d~~~~~~~~~~~l~~~g~~~i~~v~~~~~~~~~~~~r~~gf~~~~~ 142 (259)
T cd01542 71 REAIKKLNVPVVVVGQDYP-----G---ISSVVYDDYGAGYELGEYLAQQGHKNIAYLGVSESDIAVGILRKQGYLDALK 142 (259)
T ss_pred HHHHhcCCCCEEEEeccCC-----C---CCEEEECcHHHHHHHHHHHHHcCCCcEEEEcCCcccchhHHHHHHHHHHHHH
Confidence 4555667899998753221 1 1235556677778888887778889999996432 1 23456678888888
Q ss_pred hcCc-EEEEEeecCCCCChhhHHHHHHHhhcCC-CeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEe
Q 008205 191 EKRC-RLSHKVPLSPKGSRNQIIDTLLTVSSMM-SRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVT 257 (574)
Q Consensus 191 ~~g~-~v~~~~~~~~~~~~~~~~~~l~~ik~~~-~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~ 257 (574)
+.|. ..... .-. .+.......+.++.+.. .+ .|+.++...+..+++.+++.|+..++-+.++.
T Consensus 143 ~~~~~~~~~~-~~~--~~~~~~~~~~~~~l~~~~~~-~i~~~~d~~a~g~~~~l~~~g~~vp~di~v~g 207 (259)
T cd01542 143 EHGICPPNIV-ETD--FSYESAYEAAQELLEPQPPD-AIVCATDTIALGAMKYLQELGRRIPEDISVAG 207 (259)
T ss_pred HcCCChHHee-ecc--CchhhHHHHHHHHhcCCCCC-EEEEcCcHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 8886 21111 111 12222334444443333 44 44444566778899999999987655555553
No 144
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=97.60 E-value=0.0093 Score=59.30 Aligned_cols=201 Identities=12% Similarity=0.074 Sum_probs=114.0
Q ss_pred CeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEE--cCCCh
Q 008205 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAII--GPQFS 107 (574)
Q Consensus 31 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii--Gp~~s 107 (574)
..-.||+++|.. ..+-.....+++.+.++ .|+++.+ .+...++..-.+....+...++.+|| ++...
T Consensus 58 ~~~~Igvv~~~~~~~f~~~l~~~i~~~~~~--------~g~~~~i--~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~ 127 (329)
T TIGR01481 58 RTTTVGVIIPDISNIYYAELARGIEDIATM--------YKYNIIL--SNSDEDPEKEVQVLNTLLSKQVDGIIFMGGTIT 127 (329)
T ss_pred CCCEEEEEeCCCCchhHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 446899999853 22222334444444333 1455544 33434444434445566677777766 32222
Q ss_pred HHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcC--C-CCcchHHH
Q 008205 108 VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD--D-HGRNGIAA 184 (574)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~--~-~g~~~~~~ 184 (574)
..+...+...++|+|......+ ...++ .+.+....-+..+++.+...|.++++++.... . .+....+.
T Consensus 128 ---~~~~~~l~~~~iPvV~~~~~~~---~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~~R~~G 198 (329)
T TIGR01481 128 ---EKLREEFSRSPVPVVLAGTVDK---ENELP---SVNIDYKQATKEAVGELIAKGHKSIAFVGGPLSDSINGEDRLEG 198 (329)
T ss_pred ---hHHHHHHHhcCCCEEEEecCCC---CCCCC---EEEECcHHHHHHHHHHHHHCCCCeEEEEecCcccccchHHHHHH
Confidence 2233455667999998643221 11222 34455666666677777778999999996432 2 23567788
Q ss_pred HHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCC
Q 008205 185 LGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESG 251 (574)
Q Consensus 185 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~ 251 (574)
+++.+++.|+.+..........+..+....++++.+..++.|+. .+...+..+++++++.|+..++
T Consensus 199 f~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~p~ai~~-~~d~~A~g~~~al~~~g~~vP~ 264 (329)
T TIGR01481 199 YKEALNKAGIQFGEDLVCEGKYSYDAGYKAFAELKGSLPTAVFV-ASDEMAAGILNAAMDAGIKVPE 264 (329)
T ss_pred HHHHHHHcCCCCCcceEEecCCChHHHHHHHHHHhCCCCCEEEE-cCcHHHHHHHHHHHHcCCCCCC
Confidence 89999988875432111111112223334555554455665554 4556788899999999986554
No 145
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=97.60 E-value=0.048 Score=54.20 Aligned_cols=199 Identities=10% Similarity=0.017 Sum_probs=102.1
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCChHHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 111 (574)
+||++.... ..+-.....+++.+.++. |+++.+. ..+..++..-.+.+.+++++++.+|+- |..+....
T Consensus 25 ~i~~v~k~~~~pf~~~~~~Gi~~aa~~~--------G~~v~~~-~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d~~al~ 95 (336)
T PRK15408 25 RIAFIPKLVGVGFFTSGGNGAKEAGKEL--------GVDVTYD-GPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLC 95 (336)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHh--------CCEEEEE-CCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHH
Confidence 799887543 222233445555555432 4566542 223345555456777888888888765 54544445
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHH-c--CCeEEEEEEEcCCC--CcchHHHHH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDY-F--GWRNVIALYVDDDH--GRNGIAALG 186 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~-~--~W~~v~ii~~~~~~--g~~~~~~l~ 186 (574)
....-+...+||+|.+.+..+. +.. .+++.. -++...+..+++++.+ . +-.+++++...... .....+.++
T Consensus 96 ~~l~~a~~~gIpVV~~d~~~~~--~~~-~~~V~~-~~~~~~G~~~~~~l~~~l~~g~gki~il~g~~~~~~~~~r~~g~~ 171 (336)
T PRK15408 96 PALKRAMQRGVKVLTWDSDTKP--ECR-SYYINQ-GTPEQLGSMLVEMAAKQVGKDKAKVAFFYSSPTVTDQNQWVKEAK 171 (336)
T ss_pred HHHHHHHHCCCeEEEeCCCCCC--ccc-eEEEec-CCHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCccHHHHHHHHH
Confidence 5556677889999997543211 111 122211 1233556666666544 3 34688888743221 123345566
Q ss_pred HHHhhc--CcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe-ChHHHHHHHHHHHHCCC
Q 008205 187 DKLAEK--RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT-YDIWGLEVLNAAKHLRM 247 (574)
Q Consensus 187 ~~~~~~--g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~-~~~~~~~il~~a~~~gm 247 (574)
+.+.+. ++++.... .. ..+...-....+.+-...+++=.++| +...+.-.++++++.|+
T Consensus 172 ~~l~~~~p~~~vv~~~-~~-~~d~~~a~~~~~~lL~~~pdi~aI~~~~~~~~~Ga~~Al~~~g~ 233 (336)
T PRK15408 172 AKIAKEHPGWEIVTTQ-FG-YNDATKSLQTAEGILKAYPDLDAIIAPDANALPAAAQAAENLKR 233 (336)
T ss_pred HHHHhhCCCCEEEeec-CC-CCcHHHHHHHHHHHHHHCCCCcEEEECCCccHHHHHHHHHhCCC
Confidence 666433 45554321 11 12222223344444333444333333 33333457777888775
No 146
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=97.58 E-value=0.019 Score=55.00 Aligned_cols=205 Identities=15% Similarity=0.094 Sum_probs=114.8
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 112 (574)
.||+++|.. ..+-.....+++.+.++. |+++ .+.+...++..-......+++.++.+||-.........
T Consensus 1 ~igvi~~~~~~~~~~~~~~~i~~~a~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~~~~ 70 (267)
T cd06283 1 LIGVIVADITNPFSSLVLKGIEDVCRAH--------GYQV--LVCNSDNDPEKEKEYLESLLAYQVDGLIVNPTGNNKEL 70 (267)
T ss_pred CEEEEecCCccccHHHHHHHHHHHHHHc--------CCEE--EEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCCCCChHH
Confidence 378888764 222234455555555542 3554 34445555555455566777777777663222212223
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC-C--CcchHHHHHHHH
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD-H--GRNGIAALGDKL 189 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~-~--g~~~~~~l~~~~ 189 (574)
+ ..+...++|+|......+ ....+ .+.......+..+++.+...|-++++++..... . .....+.+++.+
T Consensus 71 l-~~~~~~~ipvV~~~~~~~---~~~~~---~v~~d~~~~g~~~~~~l~~~g~~~i~~l~~~~~~~~~~~~r~~g~~~~~ 143 (267)
T cd06283 71 Y-QRLAKNGKPVVLVDRKIP---ELGVD---TVTLDNYEAAKEAVDHLIEKGYERILFVTEPLDEISPRMERYEGFKEAL 143 (267)
T ss_pred H-HHHhcCCCCEEEEcCCCC---CCCCC---EEEeccHHHHHHHHHHHHHcCCCcEEEEecCccccccHHHHHHHHHHHH
Confidence 3 345677999998754322 11222 233455666777888887789999999975432 1 124567788888
Q ss_pred hhcCcEEEEEeecCCCCChhhHHHHHHHhhcCC--CeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 190 AEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMM--SRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 190 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~--~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
++.|.............+..+....++++.++. .+.|+ +++...+..+++.+++.|+..++-+.|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~~l~~~g~~vp~di~v~ 211 (267)
T cd06283 144 AEHGIGVNEELIEIDDEDADELDERLRQLLNKPKKKTAIF-AANGLILLEVLKALKELGIRIPEDVGLI 211 (267)
T ss_pred HHcCCCCCcceeEecccchHHHHHHHHHHHcCCCCCCEEE-EcCcHHHHHHHHHHHHcCCCCccceEEE
Confidence 887743211111111112234445566654443 44443 4455667788999999998655444443
No 147
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=97.56 E-value=0.016 Score=55.54 Aligned_cols=200 Identities=13% Similarity=0.025 Sum_probs=114.0
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 112 (574)
.||+++|.. ..+-.....++..+.++. |+++.+ .++..++..-.+....++++++.+||--.+......
T Consensus 1 ~igvi~p~~~~~~~~~~~~g~~~~a~~~--------g~~~~~--~~~~~~~~~~~~~i~~~~~~~vdgii~~~~~~~~~~ 70 (268)
T cd06270 1 TIGLVVSDLDGPFFGPLLSGVESVARKA--------GKHLII--TAGHHSAEKEREAIEFLLERRCDALILHSKALSDDE 70 (268)
T ss_pred CEEEEEccccCcchHHHHHHHHHHHHHC--------CCEEEE--EeCCCchHHHHHHHHHHHHcCCCEEEEecCCCCHHH
Confidence 378899864 222234455555555542 455554 334445544445556677788887775332212222
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHHHHHh
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLA 190 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~~ 190 (574)
+ ..+...++|+|......+ ...+++ +..+....+..+++.+...|-++++++..+.. ......+.+++.++
T Consensus 71 ~-~~~~~~~ipvV~~~~~~~---~~~~~~---v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~ 143 (268)
T cd06270 71 L-IELAAQVPPLVLINRHIP---GLADRC---IWLDNEQGGYLATEHLIELGHRKIACITGPLTKEDARLRLQGYRDALA 143 (268)
T ss_pred H-HHHhhCCCCEEEEeccCC---CCCCCe---EEECcHHHHHHHHHHHHHCCCceEEEEeCCcccccHHHHHHHHHHHHH
Confidence 3 344667999998753322 112222 44567777888888887779999999975432 23355677888888
Q ss_pred hcCcEEEEEeecCCCCChhhHHHHHHHhhcCC--CeEEEEEeChHHHHHHHHHHHHCCCCCCC
Q 008205 191 EKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMM--SRILILHTYDIWGLEVLNAAKHLRMMESG 251 (574)
Q Consensus 191 ~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~--~~viil~~~~~~~~~il~~a~~~gm~~~~ 251 (574)
+.|+.+..........+..+....++++.+.. .+ .|+.++...+..+++.+++.|+..++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-ai~~~~d~~a~g~~~~l~~~g~~ip~ 205 (268)
T cd06270 144 EAGIALDESLIIEGDFTEEGGYAAMQELLARGAPFT-AVFCANDEMAAGAISALREHGISVPQ 205 (268)
T ss_pred HcCCCCCcceEEECCCCHHHHHHHHHHHHhCCCCCC-EEEEcCcHHHHHHHHHHHHcCCCCCC
Confidence 88764321111111123333445555544333 44 34444556677889999998876543
No 148
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=97.55 E-value=0.013 Score=56.50 Aligned_cols=206 Identities=14% Similarity=0.073 Sum_probs=109.6
Q ss_pred EEEEEEeccCC----ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhH-hcCcEEEEc-CCC
Q 008205 33 LNIGAVFALNS----TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLL-ENETVAIIG-PQF 106 (574)
Q Consensus 33 i~IG~l~~~~~----~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~-~~~v~aiiG-p~~ 106 (574)
=.||++.|... .........+..++++.-+.. |+++.+...+ .+.. +.+.+.+ .+++.+||- +..
T Consensus 4 ~~i~vi~p~~~~~~~~~~~~~~~~~~~gi~~~~~~~----g~~~~v~~~~--~~~~---~~~~~~l~~~~~dgiii~~~~ 74 (275)
T cd06295 4 DTIALVVPEPHERDQSFSDPFFLSLLGGIADALAER----GYDLLLSFVS--SPDR---DWLARYLASGRADGVILIGQH 74 (275)
T ss_pred eEEEEEecCccccccccCCchHHHHHHHHHHHHHHc----CCEEEEEeCC--chhH---HHHHHHHHhCCCCEEEEeCCC
Confidence 46899998521 011223333333333332222 4666554432 2211 2334444 457777653 222
Q ss_pred hHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHH
Q 008205 107 SVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAA 184 (574)
Q Consensus 107 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~ 184 (574)
.. ... ...+...+||+|......+ . +.+..+.+.+...+...++.+...|.++++++..+.. .+....+.
T Consensus 75 ~~-~~~-~~~~~~~~ipvV~~~~~~~---~---~~~~~V~~d~~~~g~~~a~~l~~~g~~~i~~i~~~~~~~~~~~r~~g 146 (275)
T cd06295 75 DQ-DPL-PERLAETGLPFVVWGRPLP---G---QPYCYVGSDNVGGGRLATEHLLARGRRRIAFLGGPQDMPEGEERLEG 146 (275)
T ss_pred CC-hHH-HHHHHhCCCCEEEECCccC---C---CCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEcCCCCcchhHHHHHH
Confidence 12 222 3445678999998754322 1 2233455667777888888888889999999975432 24456778
Q ss_pred HHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 185 LGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 185 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
+++.+++.++.+..........+.......++++.+. +.+.|+.. +...+..+++.+++.|+..++-..|+
T Consensus 147 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~~~~a~g~~~~l~~~g~~ip~~i~ii 219 (275)
T cd06295 147 YREALAEAGLPLDPRLVAPGDFTEESGRAAMRALLERGPDFDAVFAA-SDLMALGALRALREAGRRVPEDVAVV 219 (275)
T ss_pred HHHHHHHcCCCCChhhEEeccCCHHHHHHHHHHHHhCCCCCCEEEEC-CcHHHHHHHHHHHHhCCCCccceEEE
Confidence 8888888774332111111111222333444443333 34544443 45666778888889888544444443
No 149
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=97.54 E-value=0.029 Score=54.59 Aligned_cols=199 Identities=9% Similarity=0.014 Sum_probs=109.8
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCChHHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 111 (574)
.||+++|.. ..+-.....++.-+.++. |++ +.+.++..++..-.+...+++.+++.+||- |..+....
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~a~~~--------g~~--~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~ 70 (288)
T cd01538 1 KIGLSLPTKTEERWIRDRPNFEAALKEL--------GAE--VIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDGEALA 70 (288)
T ss_pred CeEEEEeCCCcHHHHHHHHHHHHHHHHc--------CCE--EEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhHH
Confidence 389999853 222223344444444431 344 444566666666566666778888887663 43333323
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHc------CCeEEEEEEEcCC--CCcchHH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF------GWRNVIALYVDDD--HGRNGIA 183 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~------~W~~v~ii~~~~~--~g~~~~~ 183 (574)
.....+...++|+|......+. ....+. +..+....+..+++.+... |-++++++..+.. ......+
T Consensus 71 ~~l~~l~~~~ipvV~~~~~~~~---~~~~~~--v~~d~~~~g~~~~~~l~~~~~~~~~g~~~i~~l~g~~~~~~~~~R~~ 145 (288)
T cd01538 71 SAVEKAADAGIPVIAYDRLILN---SNVDYY--VSFDNEKVGELQGQALVDGLGAKGKPPGNIELIAGSPTDNNAKLFFN 145 (288)
T ss_pred HHHHHHHHCCCCEEEECCCCCC---CCcceE--EEeChHHHHHHHHHHHHHHHhhcCCCCceEEEEECCCCCchHHHHHH
Confidence 3344456789999987543221 112222 3345555666666665444 8889999975432 2334567
Q ss_pred HHHHHHhhcC----cEEEEEeecCCCCChhhHHHHHHHhhcC---CCeEEEEEeChHHHHHHHHHHHHCCCCC
Q 008205 184 ALGDKLAEKR----CRLSHKVPLSPKGSRNQIIDTLLTVSSM---MSRILILHTYDIWGLEVLNAAKHLRMME 249 (574)
Q Consensus 184 ~l~~~~~~~g----~~v~~~~~~~~~~~~~~~~~~l~~ik~~---~~~viil~~~~~~~~~il~~a~~~gm~~ 249 (574)
.+++.+++.+ +.+... ......+..+-...++++-+. ..+ .|++.+...+..++.++++.|+..
T Consensus 146 gf~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~-~I~~~~d~~a~g~~~al~~~g~~~ 216 (288)
T cd01538 146 GAMSVLKPLIDSGKITIVGE-VATPDWDPETAQKRMENALTANYNKVD-GVLAANDGTAGGAIAALKAAGLAG 216 (288)
T ss_pred HHHHHHHhccccCCeeEEec-cccCCCCHHHHHHHHHHHHHhCCCCcc-EEEeCCcHHHHHHHHHHHHcCCCC
Confidence 7788888876 443321 111111222223344444332 233 333445667778889999988754
No 150
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=97.53 E-value=0.023 Score=54.34 Aligned_cols=206 Identities=13% Similarity=0.055 Sum_probs=114.4
Q ss_pred EEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHHHH
Q 008205 35 IGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHLVS 114 (574)
Q Consensus 35 IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~va 114 (574)
||+++|... ......+...+++.-+.. |+++.+ .++..++..-.+....++..++.+|+-.........+.
T Consensus 2 igvi~~~~~---~~~~~~~~~~~~~~~~~~----g~~~~~--~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~ 72 (264)
T cd06274 2 IGLIIPDLE---NRSFARIAKRLEALARER----GYQLLI--ACSDDDPETERETVETLIARQVDALIVAGSLPPDDPYY 72 (264)
T ss_pred EEEEecccc---CchHHHHHHHHHHHHHHC----CCEEEE--EeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCchHHHH
Confidence 789998642 223333334444432222 455444 44455665555566677788888776433322222233
Q ss_pred HhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHHHHHhhc
Q 008205 115 HIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLAEK 192 (574)
Q Consensus 115 ~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~~~~ 192 (574)
.+...++|+|......+ ....++ +...+...+..+++.+...|-++++++..... ......+.+++.+++.
T Consensus 73 -~~~~~~ipvV~~~~~~~---~~~~~~---V~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~ 145 (264)
T cd06274 73 -LCQKAGLPVVALDRPGD---PSRFPS---VVSDNRDGAAELTRELLAAPPEEVLFLGGLPELSPSRERLAGFRQALADA 145 (264)
T ss_pred -HHHhcCCCEEEecCccC---CCCCCE---EEEccHHHHHHHHHHHHHCCCCcEEEEeCCCcccchHHHHHHHHHHHHHc
Confidence 35668899998744321 112233 34455555677777776788899999975432 3345678888899888
Q ss_pred CcEEEEEeecCCCCChhhHHHHHHHhhcC---CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEe
Q 008205 193 RCRLSHKVPLSPKGSRNQIIDTLLTVSSM---MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVT 257 (574)
Q Consensus 193 g~~v~~~~~~~~~~~~~~~~~~l~~ik~~---~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~ 257 (574)
|..+..........+...-...++++-.. ..+.|+ +++...+..+++++++.|+..++-+-|++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~ip~dv~v~g 212 (264)
T cd06274 146 GLPVQPDWIYAEGYSPESGYQLMAELLARLGRLPRALF-TTSYTLLEGVLRFLRERPGLAPSDLRIAT 212 (264)
T ss_pred CCCCCcceeecCCCChHHHHHHHHHHHccCCCCCcEEE-EcChHHHHHHHHHHHHcCCCCCcceEEEE
Confidence 75322111111111222333444444322 245444 44556677889999999886555555443
No 151
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=97.51 E-value=0.054 Score=52.00 Aligned_cols=208 Identities=11% Similarity=0.074 Sum_probs=115.7
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCChHHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVIAHL 112 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~~ 112 (574)
+||+++|... ......+...+++.=+.. .|+++ .+.++..++..-.+...+++.+++.+||= |........
T Consensus 1 ~ig~~~~~~~---~~~~~~~~~~i~~~~~~~---~g~~~--~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~ 72 (270)
T cd06308 1 VIGFSQCNLA---DPWRAAMNDEIQREASNY---PDVEL--IIADAADDNSKQVADIENFIRQGVDLLIISPNEAAPLTP 72 (270)
T ss_pred CEEEEeeCCC---CHHHHHHHHHHHHHHHhc---CCcEE--EEEcCCCCHHHHHHHHHHHHHhCCCEEEEecCchhhchH
Confidence 4888887532 122222333333322111 14555 34455556655556666777777776653 333322222
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEcCCC--CcchHHHHHHH
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVDDDH--GRNGIAALGDK 188 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~--~W~~v~ii~~~~~~--g~~~~~~l~~~ 188 (574)
....+...++|+|...... .+. .+...+..++...+...++.+... |-++++++...... .....+.+++.
T Consensus 73 ~~~~~~~~~ipvV~~~~~~---~~~--~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~R~~g~~~~ 147 (270)
T cd06308 73 VVEEAYRAGIPVILLDRKI---LSD--KYTAYIGADNYEIGRQAGEYIANLLPGKGNILEIWGLEGSSPAIERHDGFKEA 147 (270)
T ss_pred HHHHHHHCCCCEEEeCCCC---CCc--cceEEeecCcHHHHHHHHHHHHHHcCCCceEEEEECCCCCchHHHHHHHHHHH
Confidence 3334456899999875321 111 223346667777777888876664 88999999744322 23457788889
Q ss_pred Hhhc-CcEEEEEeecCCCCChhhHHHHHHHh-hc-CCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeC
Q 008205 189 LAEK-RCRLSHKVPLSPKGSRNQIIDTLLTV-SS-MMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD 258 (574)
Q Consensus 189 ~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~i-k~-~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~ 258 (574)
++++ |+.+... .....+..+....++++ ++ .+.+. |++.+...+..+++++++.|+. .+...+..+
T Consensus 148 l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~a-I~~~~d~~a~g~~~al~~~g~~-~dv~vvg~d 216 (270)
T cd06308 148 LSKYPKIKIVAQ--QDGDWLKEKAEEKMEELLQANPDIDL-VYAHNDPMALGAYLAAKRAGRE-KEIKFIGID 216 (270)
T ss_pred HHHCCCCEEEEe--cCCCccHHHHHHHHHHHHHhCCCCcE-EEeCCcHHHHHHHHHHHHcCCC-CCcEEEEec
Confidence 9888 7765432 11111222222334443 22 23454 4445667777899999999986 444555443
No 152
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=97.51 E-value=0.03 Score=55.00 Aligned_cols=205 Identities=18% Similarity=0.115 Sum_probs=114.9
Q ss_pred EEEEeccC-C-ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc--CcEEEEc-CCChHH
Q 008205 35 IGAVFALN-S-TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN--ETVAIIG-PQFSVI 109 (574)
Q Consensus 35 IG~l~~~~-~-~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~--~v~aiiG-p~~s~~ 109 (574)
||+++|.. . .+-.....+++.+.++ .|+++.+ .++..+...-...+..++++ ++.+||= |... .
T Consensus 2 Igvi~~~~~~~~~~~~~~~gi~~~~~~--------~g~~v~~--~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~~~-~ 70 (305)
T cd06324 2 VVFLNPGKSDEPFWNSVARFMQAAADD--------LGIELEV--LYAERDRFLMLQQARTILQRPDKPDALIFTNEKS-V 70 (305)
T ss_pred eEEecCCCCCCcHHHHHHHHHHHHHHh--------cCCeEEE--EeCCCCHHHHHHHHHHHHHhccCCCEEEEcCCcc-c
Confidence 78888764 2 1222334444444433 1455544 34555665556667788888 8888664 3322 2
Q ss_pred HHHHHHhhccCCccEEecccCCCCcC-----C--CCC-CceEEecCChHHHHHHHHHHHHHcCCeE--------EEEEEE
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLS-----S--LQY-PFFVRTTQSDLYQMAAIADIVDYFGWRN--------VIALYV 173 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls-----~--~~~-~~~~r~~ps~~~~~~ai~~ll~~~~W~~--------v~ii~~ 173 (574)
.......+...++|+|......+... . ..+ .++-.+.+.....+..+++.+...+-++ ++++..
T Consensus 71 ~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~g~~~~~~~g~~~i~~i~~ 150 (305)
T cd06324 71 APELLRLAEGAGVKLFLVNSGLTEAQARELGPPREKFPDWLGQLLPNDEEAGYLMAEALISQARSVQAPGGRIDLLAISG 150 (305)
T ss_pred hHHHHHHHHhCCCeEEEEecCCCcchhhcccccccccCceeeeeccCcHHHHHHHHHHHHHHhhcccCCCCceeEEEEeC
Confidence 33334556778999998754322110 0 011 2345577778778888888777666653 777763
Q ss_pred cC--CCCcchHHHHHHHHhhcC-cEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCC
Q 008205 174 DD--DHGRNGIAALGDKLAEKR-CRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMM 248 (574)
Q Consensus 174 ~~--~~g~~~~~~l~~~~~~~g-~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~ 248 (574)
.. .......+.+++.+++.| ..+.. .+....+..+....++++-+. +.+.| ++.+...+..+++++++.|+.
T Consensus 151 ~~~~~~~~~R~~Gf~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~A~g~~~al~~~g~~ 227 (305)
T cd06324 151 DPTTPAAILREAGLRRALAEHPDVRLRQ--VVYAGWSEDEAYEQAENLLKRYPDVRLI-WAANDQMAFGALRAAKEAGRK 227 (305)
T ss_pred CCCChHHHHHHHHHHHHHHHCCCceEee--eecCCCCHHHHHHHHHHHHHHCCCccEE-EECCchHHHHHHHHHHHcCCC
Confidence 32 223456677888888876 33321 122112223333444444322 34544 345566677899999999986
Q ss_pred CCCeE
Q 008205 249 ESGYV 253 (574)
Q Consensus 249 ~~~~~ 253 (574)
.++-+
T Consensus 228 vp~di 232 (305)
T cd06324 228 PGRDV 232 (305)
T ss_pred cCCCE
Confidence 54433
No 153
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=97.51 E-value=0.019 Score=55.04 Aligned_cols=197 Identities=17% Similarity=0.110 Sum_probs=111.5
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEE-cCCChHHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAII-GPQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii-Gp~~s~~~~ 111 (574)
.||+++|.. ..+-.....++..+.++ .|+++ .+..+..++..-.+....+.+.++.+|| .|... ...
T Consensus 1 ~igvi~p~~~~~~~~~~~~gi~~~~~~--------~~~~~--~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~-~~~ 69 (265)
T cd06285 1 TIGVLVPRLTDTVMATMYEGIEEAAAE--------RGYST--FVANTGDNPDAQRRAIEMLLDRRVDGLILGDARS-DDH 69 (265)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHHHHH--------CCCEE--EEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCC-ChH
Confidence 379999863 22222333444444443 14555 3444555655544555666777888766 44332 223
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHHHHH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKL 189 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~ 189 (574)
.+ ..+...+||+|......+ ..++ +..+...-+..+++.+...|-++++++..+.. ....+.+.+++.+
T Consensus 70 ~~-~~~~~~~iPvv~~~~~~~-----~~~~---V~~d~~~ag~~a~~~L~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~~ 140 (265)
T cd06285 70 FL-DELTRRGVPFVLVLRHAG-----TSPA---VTGDDVLGGRLATRHLLDLGHRRIAVLAGPDYASTARDRLAGFRAAL 140 (265)
T ss_pred HH-HHHHHcCCCEEEEccCCC-----CCCE---EEeCcHHHHHHHHHHHHHCCCccEEEEeCCcccccHHHHHHHHHHHH
Confidence 33 445667999998753221 1222 34456666777778777779999999975432 3445677888888
Q ss_pred hhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCC
Q 008205 190 AEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESG 251 (574)
Q Consensus 190 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~ 251 (574)
++.|+.+.....+....+.......++++.+. .++ .|++.+...+..+++.+++.|+..++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-ai~~~~d~~a~g~~~~l~~~g~~~p~ 203 (265)
T cd06285 141 AEAGIEVPPERIVYSGFDIEGGEAAAEKLLRSDSPPT-AIFAVNDFAAIGVMGAARDRGLRVPD 203 (265)
T ss_pred HHcCCCCChhhEEeCCCCHHHHHHHHHHHHcCCCCCC-EEEEcCcHHHHHHHHHHHHcCCCCCc
Confidence 88886542211111112222333445554333 234 34445667777899999999975443
No 154
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=97.50 E-value=0.0078 Score=57.83 Aligned_cols=201 Identities=9% Similarity=-0.010 Sum_probs=112.3
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 112 (574)
.||+++|.. ..+-.....++..+.++. |+.+ .+.++..++....+....+.+.++.+||--.+......
T Consensus 1 ~Igvv~~~~~~~~~~~~~~~i~~~a~~~--------g~~~--~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~ 70 (269)
T cd06281 1 TIGCLVSDITNPLLAQLFSGAEDRLRAA--------GYSL--LIANSLNDPERELEILRSFEQRRMDGIIIAPGDERDPE 70 (269)
T ss_pred CEEEEecCCccccHHHHHHHHHHHHHHc--------CCEE--EEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCCCcHH
Confidence 388999853 333234455555555541 4543 44556556655555555666678887774322222234
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHHHHHh
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLA 190 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~~ 190 (574)
+...+...++|+|......+ ...++ +......-+..+++.+...|-++++++..... .+....+.+++.++
T Consensus 71 ~~~~~~~~~ipvV~i~~~~~----~~~~~---V~~d~~~~g~~a~~~l~~~G~~~i~~l~~~~~~~~~~~R~~Gf~~~~~ 143 (269)
T cd06281 71 LVDALASLDLPIVLLDRDMG----GGADA---VLFDHAAGMRQAVEYLISLGHRRIALVGGGSNTRPGRERLEGYKAAFA 143 (269)
T ss_pred HHHHHHhCCCCEEEEecccC----CCCCE---EEECcHHHHHHHHHHHHHCCCcEEEEecCccccccHHHHHHHHHHHHH
Confidence 45566778999998754322 11222 33344444455666666679999999965432 23345677888888
Q ss_pred hcCcEEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeE
Q 008205 191 EKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMESGYV 253 (574)
Q Consensus 191 ~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~--~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~ 253 (574)
++|+.+.......... .....+.+.++.. ...+.|+ +.+...+..+++++.+.|+..++-+
T Consensus 144 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~~l~~~g~~ip~dv 206 (269)
T cd06281 144 AAGLPPDPALVRLSTP-AASGFDATRALLALPDRPTAII-AGGTQVLVGVLRALREAGLRIPRDL 206 (269)
T ss_pred HcCCCCCHHHeecCcH-HHHHHHHHHHHHcCCCCCcEEE-EcCcHHHHHHHHHHHHcCCCCCcce
Confidence 8886542111111111 2222334444332 2356554 4455667788999999998655433
No 155
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=97.50 E-value=0.035 Score=53.07 Aligned_cols=202 Identities=15% Similarity=0.075 Sum_probs=111.9
Q ss_pred EEEEEeccCC-ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCChHHHH
Q 008205 34 NIGAVFALNS-TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 111 (574)
.||+++|... ..-.....+++.+.++ . |+.+.+...+. .++..-.+....++++++.++|- +......
T Consensus 1 ~i~vi~~~~~~~~~~~~~~gi~~~~~~----~----~~~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~- 70 (264)
T cd01574 1 TIGVVTTDLALHGPSSTLAAIESAARE----A----GYAVTLSMLAE-ADEEALRAAVRRLLAQRVDGVIVNAPLDDAD- 70 (264)
T ss_pred CEEEEeCCCCcccHHHHHHHHHHHHHH----C----CCeEEEEeCCC-CchHHHHHHHHHHHhcCCCEEEEeCCCCChH-
Confidence 3789998542 2222344444444444 1 45555443221 23334444455666777888763 3222222
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCC--CcchHHHHHHHH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDH--GRNGIAALGDKL 189 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~--g~~~~~~l~~~~ 189 (574)
.+.. ....++|+|...... + .. +-.+.......+..+++.+...|-++++++..+... .....+.+++.+
T Consensus 71 ~~~~-~~~~~ipvv~~~~~~---~-~~---~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~l 142 (264)
T cd01574 71 AALA-AAPADVPVVFVDGSP---S-PR---VSTVSVDQEGGARLATEHLLELGHRTIAHVAGPEEWLSARARLAGWRAAL 142 (264)
T ss_pred HHHH-HHhcCCCEEEEeccC---C-CC---CCEEEeCcHHHHHHHHHHHHHCCCCEEEEEecCCccchHHHHHHHHHHHH
Confidence 3333 346789999975431 1 11 233555666677888888877899999999754332 234556788888
Q ss_pred hhcCcEEEEEeecCCCCChhhHHHHHHHhhcCC-CeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 190 AEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMM-SRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 190 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~-~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
+..++.+... +....+..+....++.+.+.. .+. |++++...+..+++++++.|...++-+-|+
T Consensus 143 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~a-i~~~~d~~a~g~~~~~~~~g~~ip~~i~ii 207 (264)
T cd01574 143 EAAGIAPPPV--LEGDWSAESGYRAGRELLREGDPTA-VFAANDQMALGVLRALHELGLRVPDDVSVV 207 (264)
T ss_pred HHCCCCccee--eecCCCHHHHHHHHHHHHhCCCCcE-EEEcCcHHHHHHHHHHHHcCCCCccceEEe
Confidence 8777655322 111122233334444543333 443 444566677888999999887544434433
No 156
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=97.49 E-value=0.014 Score=56.46 Aligned_cols=203 Identities=13% Similarity=0.066 Sum_probs=122.2
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHLV 113 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 113 (574)
+||+++|.-. ......+..++++.=++ .|+.+-+ .++..++..- +....+.+++|.++|=.+.......+
T Consensus 3 ~IGvivp~~~---npff~~ii~gIe~~a~~----~Gy~l~l--~~t~~~~~~e-~~i~~l~~~~vDGiI~~s~~~~~~~l 72 (279)
T PF00532_consen 3 TIGVIVPDIS---NPFFAEIIRGIEQEARE----HGYQLLL--CNTGDDEEKE-EYIELLLQRRVDGIILASSENDDEEL 72 (279)
T ss_dssp EEEEEESSST---SHHHHHHHHHHHHHHHH----TTCEEEE--EEETTTHHHH-HHHHHHHHTTSSEEEEESSSCTCHHH
T ss_pred EEEEEECCCC---CcHHHHHHHHHHHHHHH----cCCEEEE--ecCCCchHHH-HHHHHHHhcCCCEEEEecccCChHHH
Confidence 6999999863 12333333333333222 2565544 4455555544 66666777788777644333233556
Q ss_pred HHhhccCCccEEecccCCCCcCCC-CCCceEEecCChHHHHHHHHHHHHHcCCeE-EEEEEEcCCC--CcchHHHHHHHH
Q 008205 114 SHIANEFQVPLLSFAATDPSLSSL-QYPFFVRTTQSDLYQMAAIADIVDYFGWRN-VIALYVDDDH--GRNGIAALGDKL 189 (574)
Q Consensus 114 a~~~~~~~iP~Is~~~~~~~ls~~-~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~-v~ii~~~~~~--g~~~~~~l~~~~ 189 (574)
..+... ++|+|...... ... ..|+. ...+..-+..+++.|...|-++ ++++...... .....+.+++.+
T Consensus 73 ~~~~~~-~iPvV~~~~~~---~~~~~~~~V---~~D~~~a~~~a~~~Li~~Gh~~~I~~i~~~~~~~~~~~R~~Gy~~Al 145 (279)
T PF00532_consen 73 RRLIKS-GIPVVLIDRYI---DNPEGVPSV---YIDNYEAGYEATEYLIKKGHRRPIAFIGGPEDSSTSRERLQGYRDAL 145 (279)
T ss_dssp HHHHHT-TSEEEEESS-S---CTTCTSCEE---EEEHHHHHHHHHHHHHHTTCCSTEEEEEESTTTHHHHHHHHHHHHHH
T ss_pred HHHHHc-CCCEEEEEecc---CCcccCCEE---EEcchHHHHHHHHHHHhcccCCeEEEEecCcchHHHHHHHHHHHHHH
Confidence 676666 99999864331 111 23333 2345556667777888889999 9999876544 345566789999
Q ss_pred hhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeE-EEEEeChHHHHHHHHHHHHCC-CCCCCeE
Q 008205 190 AEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRI-LILHTYDIWGLEVLNAAKHLR-MMESGYV 253 (574)
Q Consensus 190 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~v-iil~~~~~~~~~il~~a~~~g-m~~~~~~ 253 (574)
++.|+.+..........+..+-...++++-+..+.+ -|++++...+.-+++.+.+.| +..++-+
T Consensus 146 ~~~Gl~~~~~~i~~~~~~~~~g~~~~~~ll~~~p~idai~~~nd~~A~ga~~~l~~~gr~~ip~di 211 (279)
T PF00532_consen 146 KEAGLPIDEEWIFEGDFDYESGYEAARELLESHPDIDAIFCANDMMAIGAIRALRERGRLKIPEDI 211 (279)
T ss_dssp HHTTSCEEEEEEEESSSSHHHHHHHHHHHHHTSTT-SEEEESSHHHHHHHHHHHHHTT-TCTTTEE
T ss_pred HHcCCCCCcccccccCCCHHHHHHHHHHHHhhCCCCEEEEEeCHHHHHHHHHHHHHcCCcccChhh
Confidence 999985544433322233344445566665555441 444556777888999999999 6655544
No 157
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=97.47 E-value=0.062 Score=52.39 Aligned_cols=212 Identities=12% Similarity=0.041 Sum_probs=113.6
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEE-cCCChHHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAII-GPQFSVIAHL 112 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii-Gp~~s~~~~~ 112 (574)
|||++.|... ......+..++++.-+.. |+++.+. .+...++..-.+....++..++.+|| .|........
T Consensus 1 ~i~~i~~~~~---~~~~~~~~~gi~~~a~~~----g~~~~~~-~~~~~~~~~~~~~l~~~~~~~~dgiii~~~~~~~~~~ 72 (294)
T cd06316 1 KAAIVMHTSG---SDWSNAQVRGAKDEFAKL----GIEVVAT-TDAQFDPAKQVADIETTISQKPDIIISIPVDPVSTAA 72 (294)
T ss_pred CeEEEecCCC---ChHHHHHHHHHHHHHHHc----CCEEEEe-cCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCchhhhH
Confidence 5888887532 123334444444432222 4555432 34555665555666677777777665 3433332233
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEcCCC--CcchHHHHHHH
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVDDDH--GRNGIAALGDK 188 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~--~W~~v~ii~~~~~~--g~~~~~~l~~~ 188 (574)
+...+...+||+|.+....+.... .-.++..+..+...-+..+++.+... +-++++++..+.+. .....+.+.+.
T Consensus 73 ~i~~~~~~~iPvV~~~~~~~~~~~-~~~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~R~~gf~~~ 151 (294)
T cd06316 73 AYKKVAEAGIKLVFMDNVPSGLEH-GKDYAGIVTDDNYGNGQIAADALAKALPGKGKVGLIYHGADYFVTNQRDQGFKET 151 (294)
T ss_pred HHHHHHHcCCcEEEecCCCccccc-CcceEEEEccCcHHHHHHHHHHHHHHhCCCceEEEEeCCCCcccHHHHHHHHHHH
Confidence 334566789999987543322211 01233445666666677888877665 77899999754332 34456777888
Q ss_pred HhhcCcEEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeC
Q 008205 189 LAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD 258 (574)
Q Consensus 189 ~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~--~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~ 258 (574)
+++.+..+........ .+.......++.+-. ...+.|+ +.+...+..+++.+++.|+ .+...+..+
T Consensus 152 l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~~l~~~g~--~di~vvg~d 219 (294)
T cd06316 152 IKKNYPDITIVAEKGI-DGPSKAEDIANAMLTQNPDLKGIY-AVWDVPAEGVIAALRAAGR--DDIKVTTVD 219 (294)
T ss_pred HHHhCCCcEEEeecCC-cchhHHHHHHHHHHHhCCCeeEEE-eCCCchhHHHHHHHHHcCC--CCceEEEeC
Confidence 8765532221111110 111222233444322 2344443 4456678889999999986 344444433
No 158
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=97.47 E-value=0.023 Score=56.75 Aligned_cols=203 Identities=8% Similarity=-0.007 Sum_probs=112.4
Q ss_pred CeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHH
Q 008205 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI 109 (574)
Q Consensus 31 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 109 (574)
..-.||+++|.. ..+......++..+.++ . |+.+. +.++..++..-......++.+++.+||-......
T Consensus 63 ~~~~Igvv~~~~~~~~~~~i~~gi~~~a~~---~-----g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 132 (342)
T PRK10014 63 QSGVIGLIVRDLSAPFYAELTAGLTEALEA---Q-----GRMVF--LLQGGKDGEQLAQRFSTLLNQGVDGVVIAGAAGS 132 (342)
T ss_pred CCCEEEEEeCCCccchHHHHHHHHHHHHHH---c-----CCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 446899999863 22222334444444332 2 34443 3344445544445555666778877664222222
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCC--CcchHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDH--GRNGIAALGD 187 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~--g~~~~~~l~~ 187 (574)
.......+...++|+|...... ....+++ +.......+..+++.|...|.++++++...... .....+.+++
T Consensus 133 ~~~~~~~l~~~~iPvV~~~~~~---~~~~~~~---V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~ 206 (342)
T PRK10014 133 SDDLREMAEEKGIPVVFASRAS---YLDDVDT---VRPDNMQAAQLLTEHLIRNGHQRIAWLGGQSSSLTRAERVGGYCA 206 (342)
T ss_pred cHHHHHHHhhcCCCEEEEecCC---CCCCCCE---EEeCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccHHHHHHHHHH
Confidence 2334455667899999864321 1112222 455666677778888877899999999644322 2346677888
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCC
Q 008205 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMES 250 (574)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~ 250 (574)
.+++.|+.+.....+....+.......++++-+. ..+.| ++.+...+..++..+.+.|+..+
T Consensus 207 al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai-~~~nd~~A~g~~~~l~~~g~~vp 270 (342)
T PRK10014 207 TLLKFGLPFHSEWVLECTSSQKQAAEAITALLRHNPTISAV-VCYNETIAMGAWFGLLRAGRQSG 270 (342)
T ss_pred HHHHcCCCCCcceEecCCCChHHHHHHHHHHHcCCCCCCEE-EECCcHHHHHHHHHHHHcCCCCC
Confidence 9988886532211111111222223344444333 34444 34566777788888989887544
No 159
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=97.46 E-value=0.018 Score=57.55 Aligned_cols=208 Identities=10% Similarity=0.036 Sum_probs=113.3
Q ss_pred eEEEEEEeccCC-ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHH
Q 008205 32 VLNIGAVFALNS-TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIA 110 (574)
Q Consensus 32 ~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~ 110 (574)
.-.||+++|... .+-.....++..+.++ . |+++ .+.++..++..-.+....++.+++.+||--......
T Consensus 59 ~~~i~vi~~~~~~~~~~~~~~gi~~~~~~----~----g~~~--~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~ 128 (341)
T PRK10703 59 TKSIGLLATSSEAPYFAEIIEAVEKNCYQ----K----GYTL--ILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCSEYPE 128 (341)
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHH----C----CCEE--EEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCH
Confidence 357999998742 2222334444444443 1 3444 344445555555555666777778876632211122
Q ss_pred HHHHHhhcc-CCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcC--CCCcchHHHHHH
Q 008205 111 HLVSHIANE-FQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD--DHGRNGIAALGD 187 (574)
Q Consensus 111 ~~va~~~~~-~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~--~~g~~~~~~l~~ 187 (574)
..+ ..+.. .++|+|......+ +..+..+ +.+.....+...++.+...|-+++++|.... .......+.+++
T Consensus 129 ~~~-~~l~~~~~iPvV~~d~~~~---~~~~~~~--v~~d~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~ 202 (341)
T PRK10703 129 PLL-AMLEEYRHIPMVVMDWGEA---KADFTDA--IIDNAFEGGYLAGRYLIERGHRDIGVIPGPLERNTGAGRLAGFMK 202 (341)
T ss_pred HHH-HHHHhcCCCCEEEEecccC---CcCCCCe--EEECcHHHHHHHHHHHHHCCCCcEEEEeCCccccchHHHHHHHHH
Confidence 233 33444 6999998743221 1111222 3444444566777776667889999996432 234456778888
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
.+++.|+.+.............+....++++.+. ..+.|+ +++...+..++.++.+.|...++-+.|+
T Consensus 203 ~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~a~g~~~al~~~g~~ip~dv~vv 272 (341)
T PRK10703 203 AMEEANIKVPEEWIVQGDFEPESGYEAMQQILSQKHRPTAVF-CGGDIMAMGAICAADEMGLRVPQDISVI 272 (341)
T ss_pred HHHHcCCCCChHHeEeCCCCHHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 9988887643211111111223334455554333 345444 4566667788999999987655544443
No 160
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=97.45 E-value=0.045 Score=52.58 Aligned_cols=194 Identities=7% Similarity=-0.064 Sum_probs=111.5
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC--CCHHHHHHHHHHhHhcCcEEEEc-CCChHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTN--YSRFLGMVEALTLLENETVAIIG-PQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~--~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~ 109 (574)
+||+++|.. ..+-.....+++.+.++. |+++.+ .+.. .+...-.+....+++.++.+||- |.....
T Consensus 1 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~~~~~ 70 (268)
T cd06306 1 KLCVLYPHLKDAYWLSVNYGMVEEAKRL--------GVSLKL--LEAGGYPNLAKQIAQLEDCAAWGADAILLGAVSPDG 70 (268)
T ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHHHc--------CCEEEE--ecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhh
Confidence 489999863 222233445555555542 455444 3333 23444445566777778887664 333322
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCC-----eEEEEEEEcCC--CCcchH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGW-----RNVIALYVDDD--HGRNGI 182 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W-----~~v~ii~~~~~--~g~~~~ 182 (574)
...+ ..+...+||+|....... +. .....+.......+..+++.+...+- ++++++..... ......
T Consensus 71 ~~~~-~~~~~~giPvV~~~~~~~---~~--~~~~~V~~d~~~~g~~~~~~l~~~g~~~~~~~~i~~l~g~~~~~~~~~R~ 144 (268)
T cd06306 71 LNEI-LQQVAASIPVIALVNDIN---SP--DITAKVGVSWYEMGYQAGEYLAQRHPKGSKPAKVAWFPGPKGAGWVKAVE 144 (268)
T ss_pred HHHH-HHHHHCCCCEEEeccCCC---Cc--ceeEEecCChHHHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCchHHHHH
Confidence 2223 345678999998643211 11 12234666777777888887766665 89999975432 334567
Q ss_pred HHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEEeChHHHHHHHHHHHHCCC
Q 008205 183 AALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRM 247 (574)
Q Consensus 183 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~--~~~~viil~~~~~~~~~il~~a~~~gm 247 (574)
+.+++.+++.++++... .....+.......++++-+ .+.+.|+ |....+..+++.+++.|+
T Consensus 145 ~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~i~--~~d~~a~~~~~~l~~~g~ 207 (268)
T cd06306 145 KGFRDALAGSAIEISAI--KYGDTGKEVQRKLVEEALEAHPDIDYIV--GSAVAAEAAVGILRQRGL 207 (268)
T ss_pred HHHHHHHhhcCcEEeee--ccCCccHHHHHHHHHHHHHhCCCcCEEe--ecchhhhHHHHHHHhcCC
Confidence 78888998888876432 1111222333344444332 2456655 346677788999999886
No 161
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=97.43 E-value=0.02 Score=54.72 Aligned_cols=205 Identities=13% Similarity=0.078 Sum_probs=111.6
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 112 (574)
.||+++|.. ..+-.....++..+.++. |+.+. +.++..++..-......++..++.+||-.........
T Consensus 1 ~igvv~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~ 70 (265)
T cd06299 1 TIGVIVPDIRNPYFASLATAIQDAASAA--------GYSTI--IGNSDENPETENRYLDNLLSQRVDGIIVVPHEQSAEQ 70 (265)
T ss_pred CEEEEecCCCCccHHHHHHHHHHHHHHc--------CCEEE--EEeCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCChHH
Confidence 388998853 222234555665555542 34444 3344445544445556677778887774322222233
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHHHHHh
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLA 190 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~~ 190 (574)
+ ..+...++|+|......+ ....++ + ..........+++.+...|-++++++..... ......+.+++.++
T Consensus 71 ~-~~l~~~~ipvV~~~~~~~---~~~~~~-v--~~d~~~~~~~~~~~l~~~g~~~I~~i~~~~~~~~~~~R~~gf~~~~~ 143 (265)
T cd06299 71 L-EDLLKRGIPVVFVDREIT---GSPIPF-V--TSDPQPGMTEAVSLLVALGHKKIGYISGPQDTSTGRERLEAFRQACA 143 (265)
T ss_pred H-HHHHhCCCCEEEEecccC---CCCCCE-E--EECcHHHHHHHHHHHHHcCCCcEEEEeCCCCcccHHHHHHHHHHHHH
Confidence 3 445567999998754322 122333 2 2334444455566666678899999964432 23455678888888
Q ss_pred hcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 191 EKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 191 ~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
+.|+.+.............+....++.+-+..++. |++++...+..+++.+++.|+..++-+.|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a-v~~~~d~~a~gv~~al~~~g~~vp~dv~v~ 208 (265)
T cd06299 144 SLGLEVNEDLVVLGGYSQESGYAGATKLLDQGATA-IIAGDSMMTIGAIRAIHDAGLVIGEDISLI 208 (265)
T ss_pred HCCCCCChHhEEecCcchHHHHHHHHHHHcCCCCE-EEEcCcHHHHHHHHHHHHhCCCCCcceeEE
Confidence 88753221111111112223334455544344554 444556677788999999888654434443
No 162
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=97.42 E-value=0.026 Score=54.06 Aligned_cols=200 Identities=10% Similarity=-0.003 Sum_probs=107.7
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHLV 113 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 113 (574)
.||+++|... ......+..++++.-++. |+++.+ .++..++..-.+....+.++++.++|--.+......+
T Consensus 1 ~i~vi~~~~~---~~~~~~~~~gi~~~~~~~----gy~~~~--~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~~~~ 71 (265)
T cd06290 1 TIGVLTQDFA---SPFYGRILKGMERGLNGS----GYSPII--ATGHWNQSRELEALELLKSRRVDALILLGGDLPEEEI 71 (265)
T ss_pred CEEEEECCCC---CchHHHHHHHHHHHHHHC----CCEEEE--EeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCChHHH
Confidence 3788887632 123333333343332222 455544 4444565544445556777788887632222112223
Q ss_pred HHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcC--CCCcchHHHHHHHHhh
Q 008205 114 SHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD--DHGRNGIAALGDKLAE 191 (574)
Q Consensus 114 a~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~--~~g~~~~~~l~~~~~~ 191 (574)
..+ . .++|+|......+ +...++ +..+...-+..+++.+...|-++++++..+. .......+.+++.+.+
T Consensus 72 ~~~-~-~~iPvV~i~~~~~---~~~~~~---V~~d~~~a~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~ 143 (265)
T cd06290 72 LAL-A-EEIPVLAVGRRVP---GPGAAS---IAVDNFQGGYLATQHLIDLGHRRIAHITGPRGHIDARDRLAGYRKALEE 143 (265)
T ss_pred HHH-h-cCCCEEEECCCcC---CCCCCE---EEECcHHHHHHHHHHHHHCCCCeEEEEeCccccchhhHHHHHHHHHHHH
Confidence 333 2 4899998754322 112222 4456666677777777667999999997542 2234566778888887
Q ss_pred cCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCC
Q 008205 192 KRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESG 251 (574)
Q Consensus 192 ~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~ 251 (574)
.++.+.....+....+.......++++.+. ..+.| ++++...+..+++.+++.|+..++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai-i~~~~~~a~~~~~~l~~~g~~ip~ 204 (265)
T cd06290 144 AGLEVQPDLIVQGDFEEESGLEAVEELLQRGPDFTAI-FAANDQTAYGARLALYRRGLRVPE 204 (265)
T ss_pred cCCCCCHHHEEecCCCHHHHHHHHHHHHcCCCCCCEE-EEcCcHHHHHHHHHHHHcCCCCCc
Confidence 776432111111111222223445554333 34544 445667788889999999976544
No 163
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=97.38 E-value=0.029 Score=53.62 Aligned_cols=190 Identities=14% Similarity=0.071 Sum_probs=105.1
Q ss_pred EEEEeccCC-ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHHH
Q 008205 35 IGAVFALNS-TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHLV 113 (574)
Q Consensus 35 IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 113 (574)
||+++|... .+-.....++.-+.++ .|+++.+...+ .+. ...+...++++.++.+||--.+..... .
T Consensus 2 I~~i~~~~~~~~~~~~~~~i~~~~~~--------~g~~~~~~~~~--~~~-~~~~~i~~~~~~~vdgiii~~~~~~~~-~ 69 (266)
T cd06278 2 IGVVVADLDNPFYSELLEALSRALQA--------RGYQPLLINTD--DDE-DLDAALRQLLQYRVDGVIVTSGTLSSE-L 69 (266)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHH--------CCCeEEEEcCC--CCH-HHHHHHHHHHHcCCCEEEEecCCCCHH-H
Confidence 788887642 2222233343333332 24666555443 233 333445667777888777533222222 3
Q ss_pred HHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHHHHHhh
Q 008205 114 SHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLAE 191 (574)
Q Consensus 114 a~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~~~ 191 (574)
...+...++|+|......+ . +.+..+.++....+..+++.+...|-++++++..+.. ......+.+.+.+++
T Consensus 70 ~~~~~~~~ipvV~~~~~~~---~---~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~ 143 (266)
T cd06278 70 AEECRRNGIPVVLINRYVD---G---PGVDAVCSDNYEAGRLAAELLLAKGCRRIAFIGGPADTSTSRERERGFRDALAA 143 (266)
T ss_pred HHHHhhcCCCEEEECCccC---C---CCCCEEEEChHHHHHHHHHHHHHCCCceEEEEcCCCcccchHHHHHHHHHHHHH
Confidence 4556677999998744321 1 1223466677777888888887778899999985533 334566788888888
Q ss_pred cCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHC
Q 008205 192 KRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHL 245 (574)
Q Consensus 192 ~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~ 245 (574)
.+..+... ... ..+..+....+.++.+. ..+.|+. .+...+..+++.+++.
T Consensus 144 ~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~~~~~~~i~~-~~~~~a~~~~~~l~~~ 196 (266)
T cd06278 144 AGVPVVVE-EAG-DYSYEGGYEAARRLLASRPRPDAIFC-ANDLLAIGVMDAARQE 196 (266)
T ss_pred cCCChhhh-ccC-CCCHHHHHHHHHHHHhcCCCCCEEEE-cCcHHHHHHHHHHHHh
Confidence 88754221 111 11222233344443332 3454443 3455566777777765
No 164
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=97.36 E-value=0.024 Score=54.38 Aligned_cols=205 Identities=14% Similarity=0.072 Sum_probs=113.4
Q ss_pred EEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCChHHHHH
Q 008205 35 IGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVIAHL 112 (574)
Q Consensus 35 IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~~ 112 (574)
||++.|.. ..+-.....++..+.++ .|+++ .+.+...+...-.+....++++++.+||- |.... ..
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~--~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~-~~- 69 (270)
T cd06296 2 IGLVFPDLDSPWASEVLRGVEEAAAA--------AGYDV--VLSESGRRTSPERQWVERLSARRTDGVILVTPELT-SA- 69 (270)
T ss_pred eEEEECCCCCccHHHHHHHHHHHHHH--------cCCeE--EEecCCCchHHHHHHHHHHHHcCCCEEEEecCCCC-hH-
Confidence 78888764 33333444555444443 14554 44444444433334556667778887653 33322 22
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHHHHHh
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLA 190 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~~ 190 (574)
....+...++|+|....... ....++ .+.++....+...++.+...|+++++++..... ......+.+++.++
T Consensus 70 ~~~~~~~~~ipvV~i~~~~~--~~~~~~---~v~~d~~~~~~~a~~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~~~ 144 (270)
T cd06296 70 QRAALRRTGIPFVVVDPAGD--PDADVP---SVGATNWAGGLAATEHLLELGHRRIGFITGPPDLLCSRARLDGYRAALA 144 (270)
T ss_pred HHHHHhcCCCCEEEEecccC--CCCCCC---EEEeCcHHHHHHHHHHHHHcCCCcEEEEcCCCcchhHHHHHHHHHHHHH
Confidence 24555778999998754321 111223 355566667777788777779999999975432 33456678888888
Q ss_pred hcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCC-eEEEEe
Q 008205 191 EKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESG-YVWIVT 257 (574)
Q Consensus 191 ~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~-~~~i~~ 257 (574)
+.++.+..........+.++....++++.+. ..+ .|++.+...+..+++.+++.|+..++ ...+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-ai~~~~d~~a~~~~~~l~~~g~~~p~~i~v~~~ 213 (270)
T cd06296 145 EAGIPVDPALVREGDFSTESGFRAAAELLALPERPT-AIFAGNDLMALGVYEAARERGLRIPEDLSVVGF 213 (270)
T ss_pred HcCCCCChHHheeCCCCHHHHHHHHHHHHhCCCCCc-EEEEcCcHHHHHHHHHHHHhCCCCCCceEEEEE
Confidence 7775432111111111222333444444332 334 33444566677899999999975443 444443
No 165
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=97.36 E-value=0.048 Score=54.08 Aligned_cols=207 Identities=10% Similarity=0.021 Sum_probs=111.4
Q ss_pred CeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCChH
Q 008205 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSV 108 (574)
Q Consensus 31 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~ 108 (574)
..-.||+++|.. ..+-.....++..+.++ .|+++.+ .++..++..-.+....+.+.++.+||= |....
T Consensus 55 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~ 124 (327)
T PRK10423 55 QTRTIGMLITASTNPFYSELVRGVERSCFE--------RGYSLVL--CNTEGDEQRMNRNLETLMQKRVDGLLLLCTETH 124 (327)
T ss_pred CCCeEEEEeCCCCCCcHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 445799999864 22222344444444443 1455543 444445554445555666777777663 22211
Q ss_pred HHHHHHHhhcc-CCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcC--CCCcchHHHH
Q 008205 109 IAHLVSHIANE-FQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD--DHGRNGIAAL 185 (574)
Q Consensus 109 ~~~~va~~~~~-~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~--~~g~~~~~~l 185 (574)
. .. ...... .++|+|...... ....+ . .+......-+..+++.+...|-+++++|.... .......+.+
T Consensus 125 ~-~~-~~~l~~~~~iPvV~i~~~~---~~~~~-~--~v~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 196 (327)
T PRK10423 125 Q-PS-REIMQRYPSVPTVMMDWAP---FDGDS-D--LIQDNSLLGGDLATQYLIDKGYTRIACITGPLDKTPARLRLEGY 196 (327)
T ss_pred h-hh-HHHHHhcCCCCEEEECCcc---CCCCC-C--EEEEChHHHHHHHHHHHHHcCCCeEEEEeCCccccchHHHHHHH
Confidence 1 11 122223 489999874321 11111 1 23344444567777777778999999996432 2344567888
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
++.+++.|+.+.....+....+..+-...++++.+. .++. |++++...+..+++.+.+.|+..++-+-|+
T Consensus 197 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a-i~~~~d~~A~g~~~~l~~~g~~vP~dvsvi 268 (327)
T PRK10423 197 RAAMKRAGLNIPDGYEVTGDFEFNGGFDAMQQLLALPLRPQA-VFTGNDAMAVGVYQALYQAGLSVPQDIAVI 268 (327)
T ss_pred HHHHHHcCCCCCcceEEeCCCChHHHHHHHHHHhcCCCCCCE-EEEcCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 999998886542211111111212222344444333 2343 444566777789999999998665544443
No 166
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=97.36 E-value=0.048 Score=54.15 Aligned_cols=201 Identities=14% Similarity=0.063 Sum_probs=124.8
Q ss_pred CeEEEEEEeccCCc-cchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHH
Q 008205 31 PVLNIGAVFALNST-IGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI 109 (574)
Q Consensus 31 ~~i~IG~l~~~~~~-~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 109 (574)
..-.||+++|.-.. .-.....++..+.++ .|+. +.+..+..++..-.+....+.+++|.+||=-. ...
T Consensus 57 ~s~~Ig~i~p~~~~~~~~~i~~gi~~~~~~--------~gy~--~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~-~~~ 125 (333)
T COG1609 57 RTKTIGLVVPDITNPFFAEILKGIEEAARE--------AGYS--LLLANTDDDPEKEREYLETLLQKRVDGLILLG-ERP 125 (333)
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHH--------cCCE--EEEECCCCCHHHHHHHHHHHHHcCCCEEEEec-CCC
Confidence 55679999984321 112334444444433 2454 44444554665555555667777888877533 222
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEc--CCCCcchHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVD--DDHGRNGIAALGD 187 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~--~~~g~~~~~~l~~ 187 (574)
.......+...++|+|......+ + +-+-.+.+++..-+..+++.|...|-++++++... ...+....+.+.+
T Consensus 126 ~~~~~~~l~~~~~P~V~i~~~~~---~---~~~~~V~~Dn~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~ 199 (333)
T COG1609 126 NDSLLELLAAAGIPVVVIDRSPP---G---LGVPSVGIDNFAGAYLATEHLIELGHRRIAFIGGPLDSSASRERLEGYRA 199 (333)
T ss_pred CHHHHHHHHhcCCCEEEEeCCCc---c---CCCCEEEEChHHHHHHHHHHHHHCCCceEEEEeCCCccccHhHHHHHHHH
Confidence 33445666777999998754333 2 22344556777778888899999999999999976 3445677899999
Q ss_pred HHhhcCcEE--EEEeecCCCCChhhHHHHHHHhhc-CC--CeEEEEEeChHHHHHHHHHHHHCCCCCCC
Q 008205 188 KLAEKRCRL--SHKVPLSPKGSRNQIIDTLLTVSS-MM--SRILILHTYDIWGLEVLNAAKHLRMMESG 251 (574)
Q Consensus 188 ~~~~~g~~v--~~~~~~~~~~~~~~~~~~l~~ik~-~~--~~viil~~~~~~~~~il~~a~~~gm~~~~ 251 (574)
.+++.|+.. .....-. .+..+-...+.++.. .. ++ -|++++...|.-+++++.+.|+..++
T Consensus 200 al~~~~~~~~~~~i~~~~--~~~~~g~~~~~~ll~~~~~~pt-Aif~~nD~~Alg~l~~~~~~g~~vP~ 265 (333)
T COG1609 200 ALREAGLPINPEWIVEGD--FSEESGYEAAERLLARGEPRPT-AIFCANDLMALGALRALRELGLRVPE 265 (333)
T ss_pred HHHHCCCCCCcceEEecC--CChHHHHHHHHHHHhcCCCCCc-EEEEcCcHHHHHHHHHHHHcCCCCCC
Confidence 999999864 2111111 123333344444433 22 44 45556778889999999999987654
No 167
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=97.35 E-value=0.081 Score=51.11 Aligned_cols=200 Identities=13% Similarity=0.024 Sum_probs=109.5
Q ss_pred EEEEEeccCC-ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCChHHHH
Q 008205 34 NIGAVFALNS-TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 111 (574)
+||++.|... .+-.....++..+.++ . |+++ .+.+...++..-.+....++++++.+||- +..+....
T Consensus 1 ~igv~~~~~~~~~~~~~~~~i~~~~~~----~----g~~v--~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~~~~~~~ 70 (282)
T cd06318 1 KIGFSQYTLNSPFFAALTEAAKAHAKA----L----GYEL--ISTDAQGDLTKQIADVEDLLTRGVNVLIINPVDPEGLV 70 (282)
T ss_pred CeeEEeccccCHHHHHHHHHHHHHHHH----c----CCEE--EEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCccchH
Confidence 4888988642 1112333444444443 1 4544 44555556655556666777888877663 43333222
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHH-cCCe--EEEEEEEcC--CCCcchHHHHH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDY-FGWR--NVIALYVDD--DHGRNGIAALG 186 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~-~~W~--~v~ii~~~~--~~g~~~~~~l~ 186 (574)
.....+...++|+|......+ . ..+.+-.+.......+..+++.+.. .|-+ +++++.... ..+....+.++
T Consensus 71 ~~i~~~~~~~iPvV~~~~~~~---~-~~~~~~~v~~d~~~~g~~~~~~l~~~~g~~~~~i~~i~~~~~~~~~~~R~~gf~ 146 (282)
T cd06318 71 PAVAAAKAAGVPVVVVDSSIN---L-EAGVVTQVQSSNAKNGNLVGEWVVGELGDKPMKIILLSGDAGNLVGQARRDGFL 146 (282)
T ss_pred HHHHHHHHCCCCEEEecCCCC---C-CcCeEEEEecCcHHHHHHHHHHHHHHhCCCCceEEEEECCCCCchHhHHHHhHH
Confidence 333445678999998754221 1 0122344666777778888887644 6754 888887432 33556677888
Q ss_pred HHHhhcCcE------EEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCC
Q 008205 187 DKLAEKRCR------LSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMM 248 (574)
Q Consensus 187 ~~~~~~g~~------v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~ 248 (574)
+.+++.+.. +..........+..+....+.++... +.+ .|++.+...+..+++++++.|+.
T Consensus 147 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-ai~~~~d~~a~g~~~al~~~g~~ 215 (282)
T cd06318 147 LGVSEAQLRKYGKTNFTIVAQGYGDWTREGGLKAMEDLLVAHPDIN-VVYSENDDMALGAMRVLAEAGKT 215 (282)
T ss_pred HHHhhCcccccccCCeEEEecCCCCCCHHHHHHHHHHHHHhCCCcC-EEEECCcchHHHHHHHHHHcCCC
Confidence 888887532 11111011112222223344443222 344 33444556677889999999974
No 168
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=97.34 E-value=0.049 Score=52.38 Aligned_cols=206 Identities=17% Similarity=0.102 Sum_probs=114.2
Q ss_pred EEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCC-hH--H
Q 008205 35 IGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQF-SV--I 109 (574)
Q Consensus 35 IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~-s~--~ 109 (574)
||+++|.. ..+-.....++..+.++ . |+++. +.++..++..-.+....+.++++.++|= |.. .. .
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~----~----g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~ 71 (273)
T cd06292 2 VGLLVPELSNPIFPAFAEAIEAALAQ----Y----GYTVL--LCNTYRGGVSEADYVEDLLARGVRGVVFISSLHADTHA 71 (273)
T ss_pred EEEEeCCCcCchHHHHHHHHHHHHHH----C----CCEEE--EEeCCCChHHHHHHHHHHHHcCCCEEEEeCCCCCcccc
Confidence 78998864 22222334444444443 2 46554 3445445555555667777778887663 222 11 1
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALGD 187 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~~ 187 (574)
.......+...++|+|......+. ....+ .+..+....+..+++.+...|-++++++..... ......+.+++
T Consensus 72 ~~~~i~~~~~~~ipvV~i~~~~~~--~~~~~---~V~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~ 146 (273)
T cd06292 72 DHSHYERLAERGLPVVLVNGRAPP--PLKVP---HVSTDDALAMRLAVRHLVALGHRRIGFASGPGRTVPRRRKIAGFRA 146 (273)
T ss_pred hhHHHHHHHhCCCCEEEEcCCCCC--CCCCC---EEEECcHHHHHHHHHHHHHCCCceEEEEeCCcccccHHHHHHHHHH
Confidence 112223346779999987543221 01223 245567777788888887789999999974432 23456778888
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
.+++.++............+.......++++....++. |++++...+..+++...+.|+..++-+-|.
T Consensus 147 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~a-i~~~~d~~a~g~~~~l~~~g~~ip~di~ii 214 (273)
T cd06292 147 ALEEAGLEPPEALVARGMFSVEGGQAAAVELLGSGPTA-IVAASDLMALGAIRAARRRGLRVPEDVSVV 214 (273)
T ss_pred HHHHcCCCCChhheEeCCCCHHHHHHHHHHHhcCCCCE-EEEcCcHHHHHHHHHHHHcCCCCCcceEEE
Confidence 88888753211101111112222334444443334554 444566667788899999987655544444
No 169
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=97.33 E-value=0.063 Score=53.30 Aligned_cols=203 Identities=12% Similarity=0.004 Sum_probs=111.7
Q ss_pred CeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCC-hH
Q 008205 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQF-SV 108 (574)
Q Consensus 31 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~-s~ 108 (574)
..-.||+++|.. ..+-.....++..+.++ .|+++.+ ..+..++..-.+....+...++.+||-... ..
T Consensus 60 ~~~~Igvv~~~~~~~~~~~l~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 129 (328)
T PRK11303 60 RTRSIGLIIPDLENTSYARIAKYLERQARQ--------RGYQLLI--ACSDDQPDNEMRCAEHLLQRQVDALIVSTSLPP 129 (328)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 345799999853 22212333444444432 2465544 334444444344455566778888664222 22
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHH
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALG 186 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~ 186 (574)
....+.. +...++|+|...... ....+++ +.+++...+..+++.|...|-++++++..... .+....+.++
T Consensus 130 ~~~~~~~-l~~~~iPvV~v~~~~---~~~~~~~---V~~d~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~R~~Gf~ 202 (328)
T PRK11303 130 EHPFYQR-LQNDGLPIIALDRAL---DREHFTS---VVSDDQDDAEMLAESLLKFPAESILLLGALPELSVSFEREQGFR 202 (328)
T ss_pred ChHHHHH-HHhcCCCEEEECCCC---CCCCCCE---EEeCCHHHHHHHHHHHHHCCCCeEEEEeCccccccHHHHHHHHH
Confidence 2223333 346799999864322 1122232 34556666677777777778999999975432 3445678888
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeE
Q 008205 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYV 253 (574)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~ 253 (574)
+.+++.|+.+.... ....+..+-...++++-+. .++.|+ +++...+..+++++.+.|+..++-+
T Consensus 203 ~al~~~g~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di 268 (328)
T PRK11303 203 QALKDDPREVHYLY--ANSFEREAGAQLFEKWLETHPMPDALF-TTSYTLLQGVLDVLLERPGELPSDL 268 (328)
T ss_pred HHHHHcCCCceEEE--eCCCChHHHHHHHHHHHcCCCCCCEEE-EcCcHHHHHHHHHHHHcCCCCCCce
Confidence 99998887532221 1111222233344454333 345444 4455667788999999998655433
No 170
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=97.27 E-value=0.052 Score=52.19 Aligned_cols=207 Identities=16% Similarity=0.171 Sum_probs=116.7
Q ss_pred EEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEE-cCCChHH---H
Q 008205 35 IGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAII-GPQFSVI---A 110 (574)
Q Consensus 35 IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii-Gp~~s~~---~ 110 (574)
||+++|... ......+..++++.-++. |+++ .+.++..++..-.+...+++..++.++| -|..+.. .
T Consensus 2 igvv~~~~~---~~~~~~~~~gi~~~~~~~----g~~~--~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~ 72 (273)
T cd01541 2 IGVITTYIS---DYIFPSIIRGIESVLSEK----GYSL--LLASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPNPN 72 (273)
T ss_pred eEEEeCCcc---chhHHHHHHHHHHHHHHc----CCEE--EEEeCCCCHHHHHHHHHHHHHcCCCEEEEecccccccccc
Confidence 788887532 223333444444433332 4444 4455566776666777788888888876 3332211 1
Q ss_pred HHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC-CCcchHHHHHHHH
Q 008205 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD-HGRNGIAALGDKL 189 (574)
Q Consensus 111 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~-~g~~~~~~l~~~~ 189 (574)
......+...++|+|......+. .. +..+..++..-+..+++.+...|.++++++...+. .+....+.+++.+
T Consensus 73 ~~~~~~~~~~~ipvV~~~~~~~~---~~---~~~V~~D~~~~g~~~~~~l~~~G~~~i~~l~~~~~~~~~~r~~g~~~~l 146 (273)
T cd01541 73 IDLYLKLEKLGIPYVFINASYEE---LN---FPSLVLDDEKGGYKATEYLIELGHRKIAGIFKADDLQGVKRMKGFIKAY 146 (273)
T ss_pred HHHHHHHHHCCCCEEEEecCCCC---CC---CCEEEECcHHHHHHHHHHHHHcCCcCEEEecCCCcccHHHHHHHHHHHH
Confidence 12223356779999987543211 11 22355566767788888887889999998874332 2344566788888
Q ss_pred hhcCcEEEEE--eecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEe
Q 008205 190 AEKRCRLSHK--VPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVT 257 (574)
Q Consensus 190 ~~~g~~v~~~--~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~ 257 (574)
++.|..+... ...............++++.+. ..+. |++.+...+..+++++++.|+..++-+-|++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a-v~~~~d~~a~g~~~al~~~g~~~p~dv~vvg 217 (273)
T cd01541 147 REHGIPFNPSNVITYTTEEKEEKLFEKIKEILKRPERPTA-IVCYNDEIALRVIDLLKELGLKIPEDISVVG 217 (273)
T ss_pred HHcCCCCChHHEEeccccchhhHHHHHHHHHHcCCCCCCE-EEEcCcHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 8777632111 0111111112334445554333 3453 3445667777899999999986555444443
No 171
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=97.27 E-value=0.049 Score=52.08 Aligned_cols=200 Identities=11% Similarity=0.097 Sum_probs=112.1
Q ss_pred EEEEEeccCC-ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCChHHHH
Q 008205 34 NIGAVFALNS-TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 111 (574)
.||+++|... ..-.....++..+.++ .|+++. +.+...++..-......+...++.++|= |......
T Consensus 1 ~Ig~i~p~~~~~~~~~~~~~i~~~~~~--------~g~~~~--~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~~- 69 (263)
T cd06280 1 TVGLIVADIRNPFFTAVSRAVEDAAYR--------AGLRVI--LCNTDEDPEKEAMYLELMEEERVTGVIFAPTRATLR- 69 (263)
T ss_pred CEEEEecccccccHHHHHHHHHHHHHH--------CCCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCCch-
Confidence 3889998752 2223345555555554 246654 4444445544334445566666766553 3322211
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcC-CCCcchHHHHHHHHh
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD-DHGRNGIAALGDKLA 190 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~-~~g~~~~~~l~~~~~ 190 (574)
... ....++|+|......+ ...+++ +..+....+..+++.+...|-++++++.... .......+.+++.+.
T Consensus 70 -~~~-~~~~~iPvV~~~~~~~---~~~~~~---v~~d~~~~g~~a~~~L~~~g~~~i~~~~~~~~~~~~~R~~gf~~~~~ 141 (263)
T cd06280 70 -RLA-ELRLSFPVVLIDRAGP---AGRVDA---VVLDNRAAARTLVEHLVAQGYRRIGGLFGNASTTGAERRAGYEDAMR 141 (263)
T ss_pred -HHH-HHhcCCCEEEECCCCC---CCCCCE---EEECcHHHHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222 2456899998754322 123343 2345666677777888788999999997542 223455678888888
Q ss_pred hcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 191 EKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 191 ~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
+.|+..... ... .+..+....++++-.. .++. |++.+...+..+++.+++.|+..++-+.|+
T Consensus 142 ~~~~~~~~~-~~~--~~~~~~~~~~~~~l~~~~~~~a-i~~~~d~~a~g~~~~l~~~g~~~p~di~ii 205 (263)
T cd06280 142 RHGLAPDAR-FVA--PTAEAAEAALAAWLAAPERPEA-LVASNGLLLLGALRAVRAAGLRIPQDLALA 205 (263)
T ss_pred HcCCCCChh-hcc--cCHHHHHHHHHHHhcCCCCCcE-EEECCcHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 887653221 111 1222223344443322 3443 445566778889999999998655544443
No 172
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=97.26 E-value=0.04 Score=52.50 Aligned_cols=201 Identities=13% Similarity=0.018 Sum_probs=113.9
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 112 (574)
.||+++|.. ..+-.....+++.+.++. |+++.+ .++..++..-.+....+.+.++.+||=..+......
T Consensus 1 ~i~~i~~~~~~~~~~~i~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~ 70 (260)
T cd06286 1 TIGVVLPYINHPYFSQLVDGIEKAALKH--------GYKVVL--LQTNYDKEKELEYLELLKTKQVDGLILCSRENDWEV 70 (260)
T ss_pred CEEEEeCCCCCchHHHHHHHHHHHHHHc--------CCEEEE--EeCCCChHHHHHHHHHHHHcCCCEEEEeCCCCCHHH
Confidence 378888864 323334556666655542 455544 444555555555566677778887664222222234
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcC--CCCcchHHHHHHHHh
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD--DHGRNGIAALGDKLA 190 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~--~~g~~~~~~l~~~~~ 190 (574)
+..+.. .+ |++......+ ...+ .+.++....+..+++.+...|-++++++..+. .......+.+++.++
T Consensus 71 ~~~~~~-~~-pvv~~~~~~~----~~~~---~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~l~ 141 (260)
T cd06286 71 IEPYTK-YG-PIVLCEEYDS----KNIS---SVYIDHYEAFYEALKYLIQKGYRKIAYCIGRKKSLNSQSRKKAYKDALE 141 (260)
T ss_pred HHHHhc-CC-CEEEEecccC----CCCC---EEEECChHHHHHHHHHHHHCCCceEEEEcCCcccchhHHHHHHHHHHHH
Confidence 444444 34 8887542211 1222 34556666777788888888999999997543 233456778888888
Q ss_pred hcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEE
Q 008205 191 EKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVW 254 (574)
Q Consensus 191 ~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~ 254 (574)
+.|+.+.....+....+..+-...++.+.+. ..+ .|++++...+..+++.++++|+..++-+-
T Consensus 142 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~-ai~~~~d~~a~~~~~~l~~~g~~ip~di~ 206 (260)
T cd06286 142 EYGLTPDEEWIFEGCFTIEDGERIGHQLLKMKDRPD-AIFTGSDEVAAGIITEAKKQGIRVPEDLA 206 (260)
T ss_pred HcCCCCChHheEeCCCCHHHHHHHHHHHHcCCCCCC-EEEEcchHHHHHHHHHHHHcCCCCCcceE
Confidence 8885432111111111222334455555433 345 44455667778899999999985444333
No 173
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=97.24 E-value=0.044 Score=52.52 Aligned_cols=202 Identities=12% Similarity=0.084 Sum_probs=107.0
Q ss_pred EEEEEeccC------CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCC
Q 008205 34 NIGAVFALN------STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQF 106 (574)
Q Consensus 34 ~IG~l~~~~------~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~ 106 (574)
.||+++|.. ..+-.....+++.+.++. |+++.+. +... +..-.+.+.+++.. ++.+||-...
T Consensus 1 ~igli~p~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~~~~~~--~~~~-~~~~~~~~~~~~~~~~~dgiii~~~ 69 (270)
T cd06294 1 TIGVVLPPSADEAFQNPFFIEVLRGISAVANEN--------GYDISLA--TGKN-EEELLEEVKKMIQQKRVDGFILLYS 69 (270)
T ss_pred CEEEEeCCccccCcCCCCHHHHHHHHHHHHHHC--------CCEEEEe--cCCC-cHHHHHHHHHHHHHcCcCEEEEecC
Confidence 378898852 222223444555444441 4565543 3332 23333455555544 5776554222
Q ss_pred hHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCC--CcchHHH
Q 008205 107 SVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDH--GRNGIAA 184 (574)
Q Consensus 107 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~--g~~~~~~ 184 (574)
.... .....+...++|+|......+ . .+.+..+.......++.+++.+...|-++++++.....+ .....+.
T Consensus 70 ~~~~-~~~~~~~~~~ipvV~~~~~~~---~--~~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~g 143 (270)
T cd06294 70 REDD-PIIDYLKEEKFPFVVIGKPED---D--KENITYVDNDNIQAGYDATEYLIKLGHKKIAFVGGDLDLEVTQDRLQG 143 (270)
T ss_pred cCCc-HHHHHHHhcCCCEEEECCCCC---C--CCCCCeEEECcHHHHHHHHHHHHHcCCccEEEecCCcccHHHHHHHHH
Confidence 1112 233445677999998753221 1 011222444556666677777766799999999744332 2345678
Q ss_pred HHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCC--CeEEEEEeChHHHHHHHHHHHHCCCCCCCeE
Q 008205 185 LGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMM--SRILILHTYDIWGLEVLNAAKHLRMMESGYV 253 (574)
Q Consensus 185 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~--~~viil~~~~~~~~~il~~a~~~gm~~~~~~ 253 (574)
+++.+++.|+.+..........+..+....+.++.+.. .+.|+ +.+...+..+++.+++.|+..++-+
T Consensus 144 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~iP~dv 213 (270)
T cd06294 144 YKQALEDHGIPDRNEVIISLDFSEEGGYKALKKLLEQHPRPTAIV-ATDDLLALGVLKVLNELGLKVPEDL 213 (270)
T ss_pred HHHHHHHcCCCCCcceEEecCCchHHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCcce
Confidence 88899888753211111111122233344555543333 44333 3456678889999999998654433
No 174
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=97.23 E-value=0.15 Score=49.01 Aligned_cols=208 Identities=12% Similarity=0.024 Sum_probs=105.7
Q ss_pred EEEEEeccCC-ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEE-cCCChHHHH
Q 008205 34 NIGAVFALNS-TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAII-GPQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii-Gp~~s~~~~ 111 (574)
+||++.|... .+-.....++..+.++..-. ...+..... ...++..-.+....+.+ ++.++| .+.......
T Consensus 1 ~ig~v~~~~~~~~~~~~~~~i~~~~~~~g~~-----~~~~~~~~~-~~~~~~~~~~~i~~~~~-~vdgiii~~~~~~~~~ 73 (275)
T cd06307 1 RLGFLLPKGSNAFYRELAAALEAAAAAFPDA-----RIRVRIHFV-ESFDPAALAAALLRLGA-RSDGVALVAPDHPQVR 73 (275)
T ss_pred CeEEEeCCCCChHHHHHHHHHHHHHhhhhcc-----CceEEEEEc-cCCCHHHHHHHHHHHHh-cCCEEEEeCCCcHHHH
Confidence 5888887642 22223444454444443211 122222222 22344443444455555 777765 344333222
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHc-CC--eEEEEEEEcCC--CCcchHHHHH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF-GW--RNVIALYVDDD--HGRNGIAALG 186 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~-~W--~~v~ii~~~~~--~g~~~~~~l~ 186 (574)
.....+...++|+|.+....+ +. ..+..+.......+...++.+... |. ++++++..... ......+.++
T Consensus 74 ~~i~~~~~~~ipvV~~~~~~~---~~--~~~~~V~~d~~~~g~~~~~~l~~~~g~~~~~i~~i~~~~~~~~~~~R~~gf~ 148 (275)
T cd06307 74 AAVARLAAAGVPVVTLVSDLP---GS--PRAGYVGIDNRAAGRTAAWLIGRFLGRRPGKVAVLAGSHRFRGHEEREMGFR 148 (275)
T ss_pred HHHHHHHHCCCcEEEEeCCCC---CC--ceeeEEccChHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCcchHHHHHHHH
Confidence 233445567999998743221 11 112234555556666666765544 54 59999975432 2345567888
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~--~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
+.+++.+..+..........+..+....++++.+ .+.+.|+...+. +..+++.+++.|+. .+...+.
T Consensus 149 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~--~~g~~~al~~~g~~-~di~Ivg 217 (275)
T cd06307 149 SVLREEFPGLRVLETLEGLDDPARAYEATRKLLARHPDLVGIYNAGGG--NRGVIRALREAGRA-GKVVFVG 217 (275)
T ss_pred HHHHhhCCCcEEEeeccCCCChHHHHHHHHHHHHhCCCceEEEECCCC--hHHHHHHHHHcCCC-CCcEEEE
Confidence 8888776544322222211222333345555432 245555555433 46788999999974 3444443
No 175
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=97.21 E-value=0.046 Score=52.19 Aligned_cols=200 Identities=15% Similarity=0.064 Sum_probs=107.2
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHLV 113 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 113 (574)
.||++.|... ......+..++++.-++. |+.+.+...+ +.. .....+...++.+||-.........+
T Consensus 1 ~igvv~~~~~---~~~~~~~~~gi~~~~~~~----g~~~~~~~~~---~~~---~~~~~l~~~~vdgii~~~~~~~~~~~ 67 (261)
T cd06272 1 TIGLIWPSVS---RVALTELVTGINQAISKN----GYNMNVSITP---SLA---EAEDLFKENRFDGVIIFGESASDVEY 67 (261)
T ss_pred CEEEEecCCC---chhHHHHHHHHHHHHHHc----CCEEEEEecc---cHH---HHHHHHHHcCcCEEEEeCCCCChHHH
Confidence 3788988642 223333333333322222 4555554433 222 22344556677766532222222222
Q ss_pred HHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHHHHHhh
Q 008205 114 SHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLAE 191 (574)
Q Consensus 114 a~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~~~ 191 (574)
..+...++|+|......+ ..+++ +...+...+..+++.+...|-++++++..... ......+.+++.+++
T Consensus 68 -~~~~~~~ipvV~~~~~~~----~~~~~---V~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~ 139 (261)
T cd06272 68 -LYKIKLAIPVVSYGVDYD----LKYPI---VNVDNEKAMELAVLYLAEKGHKKIAYIGDLSLDRRQRKRFKGFLETCDE 139 (261)
T ss_pred -HHHHHcCCCEEEEcccCC----CCCCE---EEEChHHHHHHHHHHHHHcCchhEEEeecccccccHHHHHHHHHHHHHH
Confidence 344578899998643322 12232 44566667778888877789999999975433 234456778888888
Q ss_pred cCcEEEEEeecCCCCChhhHHHHHHHhhcCC--CeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEE
Q 008205 192 KRCRLSHKVPLSPKGSRNQIIDTLLTVSSMM--SRILILHTYDIWGLEVLNAAKHLRMMESGYVWI 255 (574)
Q Consensus 192 ~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~--~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i 255 (574)
.|+.+..........+.......++++.+.. .+ .|++++...+..+++.+++.|+..++-+-+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-ai~~~~d~~a~~~~~~l~~~g~~vp~dv~v 204 (261)
T cd06272 140 NGISISDSHIDVDGLSAEGGDNAAKKLLKESDLPT-AIICGSYDIALGVLSALNKQGISIPEDIEI 204 (261)
T ss_pred cCCCCCHHHeeeCCCCHHHHHHHHHHHHcCCCCCC-EEEECCcHHHHHHHHHHHHhCCCCCCceEE
Confidence 8853221111111112223334455543333 34 444555666778899999999865543333
No 176
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=97.20 E-value=0.16 Score=48.84 Aligned_cols=178 Identities=10% Similarity=-0.033 Sum_probs=105.8
Q ss_pred CcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecC
Q 008205 69 GTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQ 147 (574)
Q Consensus 69 g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~p 147 (574)
|+++. +.+...++..-.+...+++++++.+||= |..+.........+...+||+|......+ ....+.+..+.+
T Consensus 29 G~~~~--~~~~~~d~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~~~~---~~~~~~~~~v~~ 103 (272)
T cd06313 29 GVDVT--WYGGALDAVKQVAAIENMASQGWDFIAVDPLGIGTLTEAVQKAIARGIPVIDMGTLIA---PLQINVHSFLAP 103 (272)
T ss_pred CCEEE--EecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHhHHHHHHHHHCCCcEEEeCCCCC---CCCCceEEEECC
Confidence 45444 4556667766667777788888877664 44333333333445567999998754321 111122344667
Q ss_pred ChHHHHHHHHHHHHHc--CCeEEEEEEEcCC--CCcchHHHHHHHHhhcC-cEEEEEeecCCCCChhhHHHHHHHhhcCC
Q 008205 148 SDLYQMAAIADIVDYF--GWRNVIALYVDDD--HGRNGIAALGDKLAEKR-CRLSHKVPLSPKGSRNQIIDTLLTVSSMM 222 (574)
Q Consensus 148 s~~~~~~ai~~ll~~~--~W~~v~ii~~~~~--~g~~~~~~l~~~~~~~g-~~v~~~~~~~~~~~~~~~~~~l~~ik~~~ 222 (574)
.....+..+++.+... |.++++++..+.. ......+.+++.+++.+ +++... .....+.......++++...+
T Consensus 104 d~~~~g~~~~~~l~~~~~g~~~i~~l~g~~~~~~~~~R~~gf~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~ 181 (272)
T cd06313 104 DNYFMGASVAQALCNAMGGKGKIAMLQGALGHTGAQGRAQGFNDVIKKYPDIEVVDE--QPANWDVSKAARIWETWLTKY 181 (272)
T ss_pred CcHHHHHHHHHHHHHHcCCCceEEEEECCCCCcchhHHHHHHHHHHHhCCCCEEEec--cCCCCCHHHHHHHHHHHHHhC
Confidence 7777788888877666 8899999975432 23356788888888775 554331 111122233344555543332
Q ss_pred --CeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 223 --SRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 223 --~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
.+ .|++.+...+..+++.+++.|+ .+...+.
T Consensus 182 ~~~~-ai~~~nd~~a~g~~~al~~~g~--~di~vvg 214 (272)
T cd06313 182 PQLD-GAFCHNDSMALAAYQIMKAAGR--TKIVIGG 214 (272)
T ss_pred CCCC-EEEECCCcHHHHHHHHHHHcCC--CceEEEe
Confidence 34 3444556677788899999987 4443443
No 177
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=97.20 E-value=0.063 Score=53.28 Aligned_cols=204 Identities=12% Similarity=0.040 Sum_probs=111.3
Q ss_pred CeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCChH
Q 008205 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSV 108 (574)
Q Consensus 31 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~ 108 (574)
..-.||+++|.. ..+-.....++.-+.++ .|+.+.+ .++..++..-.+....+...++.+||- |....
T Consensus 59 ~~~~Igvi~~~~~~~~~~~~~~~i~~~~~~--------~gy~~~i--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 128 (327)
T TIGR02417 59 RSRTIGLVIPDLENYSYARIAKELEQQCRE--------AGYQLLI--ACSDDNPDQEKVVIENLLARQVDALIVASCMPP 128 (327)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHH--------CCCEEEE--EeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 346899999853 22222333444433332 2466544 334445544444555666778887653 33321
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHH
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALG 186 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~ 186 (574)
....+ ..+...++|+|......+ +..+++ +.+.+..-+..+++.+...|.++++++..... ......+.++
T Consensus 129 ~~~~~-~~l~~~~iPvV~~~~~~~---~~~~~~---V~~dn~~~~~~~~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 201 (327)
T TIGR02417 129 EDAYY-QKLQNEGLPVVALDRSLD---DEHFCS---VISDDVDAAAELIERLLSQHADEFWYLGAQPELSVSRDRLAGFR 201 (327)
T ss_pred ChHHH-HHHHhcCCCEEEEccccC---CCCCCE---EEeCcHHHHHHHHHHHHHCCCCeEEEEeCcccchhHHHHHHHHH
Confidence 22233 334567999998754322 112232 44455555666667777778999999974432 2345677888
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC---CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEE
Q 008205 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM---MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWI 255 (574)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~---~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i 255 (574)
+.+++.|+..... +....+..+-...++++.+. .++.|+ +++...+..+++++++.| ..++-+-|
T Consensus 202 ~al~~~~~~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~~Ai~-~~~D~~A~g~~~al~~~g-~vP~dvsv 269 (327)
T TIGR02417 202 QALKQATLEVEWV--YGGNYSRESGYQMFAKLCARLGRLPQALF-TTSYTLLEGVLDYMLERP-LLDSQLHL 269 (327)
T ss_pred HHHHHcCCChHhE--EeCCCChHHHHHHHHHHHhcCCCCCcEEE-EcCcHHHHHHHHHHHHcC-CCCCcceE
Confidence 8888888643211 11111222223445554332 245444 445566778999999999 55544333
No 178
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=97.18 E-value=0.078 Score=50.67 Aligned_cols=196 Identities=13% Similarity=0.060 Sum_probs=106.9
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCChHHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 111 (574)
.||++.|.. ..+-.....+++-+.++ . |+++. +.++..++..-.+....+...++.+||- |....
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~~~~----~----g~~~~--~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~--- 67 (265)
T cd06291 1 LIGLIVPTISNPFFSELARAVEKELYK----K----GYKLI--LCNSDNDPEKEREYLEMLRQNQVDGIIAGTHNLG--- 67 (265)
T ss_pred CEEEEECCCCChhHHHHHHHHHHHHHH----C----CCeEE--EecCCccHHHHHHHHHHHHHcCCCEEEEecCCcC---
Confidence 378888753 22222333444333333 2 45544 3444445544444555566667777663 33222
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC---CCcchHHHHHHH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD---HGRNGIAALGDK 188 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~---~g~~~~~~l~~~ 188 (574)
.. .+...++|+|......+ ...++ +.++....+..+++.+...|.++++++..... ......+.+++.
T Consensus 68 -~~-~~~~~gipvv~~~~~~~----~~~~~---V~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~r~~gf~~~ 138 (265)
T cd06291 68 -IE-EYENIDLPIVSFDRYLS----ENIPI---VSSDNYEGGRLAAEELIERGCKHIAHIGGPNNTVSPTNLRYEGFLDV 138 (265)
T ss_pred -HH-HHhcCCCCEEEEeCCCC----CCCCe---EeechHHHHHHHHHHHHHcCCcEEEEEccCcccccchHHHHHHHHHH
Confidence 12 33567999998754422 12232 44555666777778777779999999974432 344566788899
Q ss_pred HhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeE
Q 008205 189 LAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYV 253 (574)
Q Consensus 189 ~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~ 253 (574)
+++.|+.+.... .....+..+....++++-.. ..+. |++++...+..+++.+.+.|+..++-+
T Consensus 139 l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~a-i~~~~d~~a~~~~~al~~~g~~vp~di 203 (265)
T cd06291 139 LKENGLEVRIIE-IQENFDDAEKKEEIKELLEEYPDIDG-IFASNDLTAILVLKEAQQRGIRVPEDL 203 (265)
T ss_pred HHHcCCCCChhe-eeccccchHHHHHHHHHHhCCCCCCE-EEECChHHHHHHHHHHHHcCCCCCcce
Confidence 988876542211 11111111123344443323 2343 334455567788899999887644433
No 179
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=97.16 E-value=0.00062 Score=80.29 Aligned_cols=84 Identities=6% Similarity=-0.028 Sum_probs=65.4
Q ss_pred CceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhcccccccccc
Q 008205 470 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKIF 549 (574)
Q Consensus 470 ~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~~ 549 (574)
.+++|++.. .|+||.... .+..+.||.+|++++|++.+|++ ++++... .|..+...|.+|++|+.
T Consensus 302 ~~l~v~~~~--~~pP~~~~d-~~g~~~G~~~Dll~~i~~~~g~~--~~~v~~~------~~~~~~~~l~~g~~D~i---- 366 (1197)
T PRK09959 302 PDLKVLENP--YSPPYSMTD-ENGSVRGVMGDILNIITLQTGLN--FSPITVS------HNIHAGTQLNPGGWDII---- 366 (1197)
T ss_pred CceEEEcCC--CCCCeeEEC-CCCcEeeehHHHHHHHHHHHCCe--EEEEecC------CHHHHHHHHHCCCceEe----
Confidence 346777633 467776543 34579999999999999999998 8887773 67788888999999974
Q ss_pred cceeeeEEEEeeCc----eeeeccccc
Q 008205 550 FNLVILFAILANGG----FLVPCRSMT 572 (574)
Q Consensus 550 ~~~~~~~~~~~~~~----~~v~f~~~~ 572 (574)
++++.|++|+ |+.||++..
T Consensus 367 ----~~~~~t~~r~~~~~fs~py~~~~ 389 (1197)
T PRK09959 367 ----PGAIYSEDRENNVLFAEAFITTP 389 (1197)
T ss_pred ----ecccCCccccccceeccccccCC
Confidence 5566889997 888887654
No 180
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=97.10 E-value=0.09 Score=52.57 Aligned_cols=207 Identities=10% Similarity=0.050 Sum_probs=109.5
Q ss_pred CeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHH
Q 008205 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI 109 (574)
Q Consensus 31 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 109 (574)
..-.||+++|.- ..+-.....+++.+.++ . |+.+ .+.+...++..-.+....++.+++.++|-......
T Consensus 58 ~~~~Igvi~~~~~~~f~~~~~~gi~~~~~~---~-----g~~~--~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~ 127 (343)
T PRK10727 58 STETVGLVVGDVSDPFFGAMVKAVEQVAYH---T-----GNFL--LIGNGYHNEQKERQAIEQLIRHRCAALVVHAKMIP 127 (343)
T ss_pred CCCeEEEEeCCCCcchHHHHHHHHHHHHHH---c-----CCEE--EEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCC
Confidence 456799999752 22212233333333332 2 3444 34444445544444555667778877664221111
Q ss_pred HHHHHHhhccCCcc-EEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHH
Q 008205 110 AHLVSHIANEFQVP-LLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALG 186 (574)
Q Consensus 110 ~~~va~~~~~~~iP-~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~ 186 (574)
...+..+.. ++| +|......+ +...++ +.+.+..-+..+++.+...|.+++++|..... ......+.++
T Consensus 128 ~~~~~~~~~--~~p~vV~i~~~~~---~~~~~~---V~~Dn~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 199 (343)
T PRK10727 128 DAELASLMK--QIPGMVLINRILP---GFENRC---IALDDRYGAWLATRHLIQQGHTRIGYLCSNHSISDAEDRLQGYY 199 (343)
T ss_pred hHHHHHHHh--cCCCEEEEecCCC---CCCCCE---EEECcHHHHHHHHHHHHHCCCccEEEEeCCccccchHHHHHHHH
Confidence 222334333 677 676533211 111222 44455555666677777779999999975432 3445678889
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCC--CeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMM--SRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~--~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
+.+++.|+.+..........+...-...++++.+.+ .+.| ++.+...+..++++++++|+..++-+-|+
T Consensus 200 ~al~~~gi~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai-~~~nD~~A~g~~~al~~~G~~vP~disVi 270 (343)
T PRK10727 200 DALAESGIPANDRLVTFGEPDESGGEQAMTELLGRGRNFTAV-ACYNDSMAAGAMGVLNDNGIDVPGEISLI 270 (343)
T ss_pred HHHHHCCCCCChhhEEeCCCChhHHHHHHHHHHhCCCCCCEE-EEcCcHHHHHHHHHHHHcCCCCCcceeEE
Confidence 999988875321111111112222223444443332 4444 44566778889999999998655544443
No 181
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=97.10 E-value=0.28 Score=47.02 Aligned_cols=203 Identities=12% Similarity=0.096 Sum_probs=105.5
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEE-cCCChHH-HH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAII-GPQFSVI-AH 111 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii-Gp~~s~~-~~ 111 (574)
+||++......+-.....++..+.++ .|+.+.+.. ++..+...-.+....+++.++.++| .|..... ..
T Consensus 1 ~i~~v~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~~~-~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~ 71 (271)
T cd06314 1 TIAVVTNGASPFWKIAEAGVKAAGKE--------LGVDVEFVV-PQQGTVNAQLRMLEDLIAEGVDGIAISPIDPKAVIP 71 (271)
T ss_pred CeEEEcCCCcHHHHHHHHHHHHHHHH--------cCCeEEEeC-CCCCCHHHHHHHHHHHHhcCCCEEEEecCChhHhHH
Confidence 47877754432222333444444433 145544432 2333554444556667777888766 3444332 33
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEcC--CCCcchHHHHHH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVDD--DHGRNGIAALGD 187 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~--~W~~v~ii~~~~--~~g~~~~~~l~~ 187 (574)
.+..+ .. ++|+|......+ +. +.+-.+.......+..+++.+... +-.+++++.... .......+.+++
T Consensus 72 ~l~~~-~~-~ipvV~~~~~~~---~~--~~~~~V~~D~~~~g~~a~~~l~~~~~~g~~~~~~~~~~~~~~~~~R~~gf~~ 144 (271)
T cd06314 72 ALNKA-AA-GIKLITTDSDAP---DS--GRYVYIGTDNYAAGRTAGEIMKKALPGGGKVAIFVGSLGADNAKERIQGIKD 144 (271)
T ss_pred HHHHH-hc-CCCEEEecCCCC---cc--ceeEEEccChHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCCHHHHHHHHHH
Confidence 44444 45 999998743221 11 112234556666667777776553 234566665432 234456788899
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
.+++.|+.+.... .. ..+..+....++++-+. ..+.|+ +.+...+..++..+++.|+. .+...++
T Consensus 145 ~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~l~~~~~~~~i~-~~~d~~a~~~~~al~~~g~~-~di~vig 211 (271)
T cd06314 145 AIKDSKIEIVDTR-GD-EEDFAKAKSNAEDALNAHPDLKCMF-GLYAYNGPAIAEAVKAAGKL-GKVKIVG 211 (271)
T ss_pred HHhcCCcEEEEEe-cC-ccCHHHHHHHHHHHHHhCCCccEEE-ecCCccHHHHHHHHHHcCCC-CceEEEE
Confidence 9988888764321 11 12223333445554333 334443 33445555678888888875 3333333
No 182
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=97.09 E-value=0.087 Score=50.47 Aligned_cols=198 Identities=11% Similarity=0.025 Sum_probs=105.4
Q ss_pred EEEEEeccC----CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHH
Q 008205 34 NIGAVFALN----STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~----~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 109 (574)
.||+++|.. ..+-.....+++-+.++ . |+++.+...+. +...-......+.+.++.+||.......
T Consensus 1 ~vgv~~~~~~~~~~~~~~~~~~~i~~~~~~----~----g~~~~~~~~~~--~~~~~~~~~~~l~~~~vdgiii~~~~~~ 70 (268)
T cd06277 1 NIGLIASKRILNSPAFYSEIYRAIEEEAKK----Y----GYNLILKFVSD--EDEEEFELPSFLEDGKVDGIILLGGIST 70 (268)
T ss_pred CeEEEEeccccccCCcHHHHHHHHHHHHHH----c----CCEEEEEeCCC--ChHHHHHHHHHHHHCCCCEEEEeCCCCh
Confidence 378899872 22222333444444333 1 56666655443 3222222223355678888775332221
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALGD 187 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~~ 187 (574)
. ....+...++|+|......+ ....++ +..+....+...++.+...|.++++++..... ......+.+.+
T Consensus 71 -~-~~~~l~~~~ipvV~~~~~~~---~~~~~~---V~~d~~~~~~~a~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~ 142 (268)
T cd06277 71 -E-YIKEIKELGIPFVLVDHYIP---NEKADC---VLTDNYSGAYAATEYLIEKGHRKIGFVGDPLYSPSFEERYEGYKK 142 (268)
T ss_pred -H-HHHHHhhcCCCEEEEccCCC---CCCCCE---EEecchHHHHHHHHHHHHCCCCcEEEECCCCCCcchHHHHHHHHH
Confidence 1 24445667999998643322 112223 33445555666667777779999999975543 22346677888
Q ss_pred HHhhcCcEEEEEeecCC-CCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCC
Q 008205 188 KLAEKRCRLSHKVPLSP-KGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESG 251 (574)
Q Consensus 188 ~~~~~g~~v~~~~~~~~-~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~ 251 (574)
.+++.|+.+........ ..........++.+.. ..+ .|+.++...+..+++++.+.|+..++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~-ai~~~~d~~a~g~~~a~~~~g~~~p~ 205 (268)
T cd06277 143 ALLDHGIPFNEDYDITEKEEDEEDIGKFIDELKP-LPT-AFFCSNDGVAFLLIKVLKEMGIRVPE 205 (268)
T ss_pred HHHHcCCCCCcceEEEcchhHHHHHHHHHhcCCC-CCC-EEEECCcHHHHHHHHHHHHcCCCCCC
Confidence 88888865432111110 1122233333333221 244 34445556677788888888875443
No 183
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=97.07 E-value=0.084 Score=50.67 Aligned_cols=201 Identities=13% Similarity=0.033 Sum_probs=108.9
Q ss_pred EEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHH-hHhcCcEEEEcCCChHHHHH
Q 008205 35 IGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALT-LLENETVAIIGPQFSVIAHL 112 (574)
Q Consensus 35 IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~-l~~~~v~aiiGp~~s~~~~~ 112 (574)
||++.|.. ..+-.....++..+.++ .|+++.+...+ .+. ...+...+ +...++.+||=-...... .
T Consensus 2 Igvi~p~~~~~~~~~~~~~i~~~~~~--------~gy~~~~~~~~--~~~-~~~~~~~~~l~~~~vdgvi~~~~~~~~-~ 69 (269)
T cd06297 2 ISVLLPVVATEFYRRLLEGIEGALLE--------QRYDLALFPLL--SLA-RLKRYLESTTLAYLTDGLLLASYDLTE-R 69 (269)
T ss_pred EEEEeCCCcChhHHHHHHHHHHHHHH--------CCCEEEEEeCC--CcH-HHHHHHHHHHHhcCCCEEEEecCccCh-H
Confidence 78888864 22223334444444444 24665554433 222 22233333 445567765532222222 3
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcC--C------CCcchHHH
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD--D------HGRNGIAA 184 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~--~------~g~~~~~~ 184 (574)
....+...++|+|......+ ..++ +.++...-+...++.|... .++++++.... . .+....+.
T Consensus 70 ~~~~l~~~~iPvv~~~~~~~-----~~~~---v~~d~~~~g~~a~~~L~~~-~~~i~~i~~~~~~~~~~~~~~~~~R~~g 140 (269)
T cd06297 70 LAERRLPTERPVVLVDAENP-----RFDS---FYLDNRLGGRLAGAYLADF-PGRIGAITVEEEPDRAFRRTVFAERRAG 140 (269)
T ss_pred HHHHHhhcCCCEEEEccCCC-----CCCE---EEECcHHHHHHHHHHHHHh-CCceEEEeCccccccccccccHHHHHHH
Confidence 33445678999998754221 1232 3456666677777766655 79999986432 2 34456788
Q ss_pred HHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCC--CeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEe
Q 008205 185 LGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMM--SRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVT 257 (574)
Q Consensus 185 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~--~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~ 257 (574)
+++.+++.|+.+.....+....+..+....+.++.+.. .+ .|++.+...+..+++.+.+.|...++-..|++
T Consensus 141 f~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-ai~~~~d~~a~g~~~~l~~~g~~vP~di~vvg 214 (269)
T cd06297 141 FQQALKDAGRPFSPDLLAITDHSEEGGRLAMRHLLEKASPPL-AVFASADQQALGALQEAVELGLTVGEDVRVVG 214 (269)
T ss_pred HHHHHHHcCCCCChhhEEeCCCChhhHHHHHHHHHcCCCCCc-EEEEcCcHHHHHHHHHHHHcCCCCCCceEEEE
Confidence 89999888875432111111112233344555544332 34 34444566777899999999986665554443
No 184
>TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein. This protein family, a sister family to TIGR03870, is found more broadly. It occurs a range of PQQ-biosynthesizing species, not just in known methanotrophs. Interpretation of evidence by homology and by direct experimental work suggest two different roles. By homology, this family appears to be the periplasmic substrate-binding protein of an ABC transport family. However, mutational studies and direct characterization for some sequences related to this family suggests this family may act as a maturation chaperone or additional subunit of a methanol dehydrogenase-like enzyme.
Probab=97.03 E-value=0.0011 Score=62.34 Aligned_cols=75 Identities=13% Similarity=0.033 Sum_probs=52.4
Q ss_pred eEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhcccccccccccc
Q 008205 472 LRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKIFFN 551 (574)
Q Consensus 472 ~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~~~~ 551 (574)
|||++.. -|+|+.. + ...||++||++++++.+|.+ ++++..+. .|.-++..|..|++|++
T Consensus 2 l~v~~~~--~~~P~~~---~--~~~G~~~el~~~i~~~~g~~--i~~~~~~~-----~~~~~~~~l~~g~~Di~------ 61 (232)
T TIGR03871 2 LRVCADP--NNLPFSN---E--KGEGFENKIAQLLADDLGLP--LEYTWFPQ-----RRGFVRNTLNAGRCDVV------ 61 (232)
T ss_pred eEEEeCC--CCCCccC---C--CCCchHHHHHHHHHHHcCCc--eEEEecCc-----chhhHHHHHhcCCccEE------
Confidence 5666643 3555542 2 34799999999999999999 77766531 34446778999999998
Q ss_pred eeeeEEEEeeCc----eeeecccc
Q 008205 552 LVILFAILANGG----FLVPCRSM 571 (574)
Q Consensus 552 ~~~~~~~~~~~~----~~v~f~~~ 571 (574)
++ +++|+ |+.||++.
T Consensus 62 -~~----~~~r~~~~~fs~py~~~ 80 (232)
T TIGR03871 62 -IG----VPAGYEMVLTTRPYYRS 80 (232)
T ss_pred -Ee----ccCccccccccCCcEee
Confidence 54 35554 77777653
No 185
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=97.01 E-value=0.25 Score=48.13 Aligned_cols=196 Identities=10% Similarity=-0.004 Sum_probs=104.5
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCChHH-HH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVI-AH 111 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~-~~ 111 (574)
+||+++|... ......+..++++.=+.. |+.+.+...+...+...-.+....+++.++.+||- |..... ..
T Consensus 1 ~igvvvp~~~---n~f~~~~~~gi~~~a~~~----g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~ 73 (295)
T TIGR02955 1 KLCALYPHLK---DSYWLSINYGMVEQAKHL----GVELKVLEAGGYPNLDKQLAQIEQCKSWGADAILLGTVSPEALNH 73 (295)
T ss_pred CeeEEecCCC---cHHHHHHHHHHHHHHHHh----CCEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhhH
Confidence 5899988642 223333333333322221 45555433332234444445666677888888764 332222 23
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHH-cC----CeEEEEEEEcCC--CCcchHHH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDY-FG----WRNVIALYVDDD--HGRNGIAA 184 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~-~~----W~~v~ii~~~~~--~g~~~~~~ 184 (574)
.+..+ . .++|+|....... .. ..+-.+......-+..+++.|.. .+ -.++++++.... ......+.
T Consensus 74 ~l~~~-~-~~iPvV~~~~~~~--~~---~~~~~V~~D~~~~g~~~~~~L~~~~~~~~g~~~I~~i~g~~~~~~~~~R~~G 146 (295)
T TIGR02955 74 DLAQL-T-KSIPVFALVNQID--SN---QVKGRVGVDWYQMGYQAGEYLAQRHPKGSGPTTLAWLPGPKNRGGTKPVTQG 146 (295)
T ss_pred HHHHH-h-cCCCEEEEecCCC--cc---ceeEEEeecHHHHHHHHHHHHHHhcccCCCCeeEEEEeCCCcCCchhHHHHH
Confidence 34433 3 4899987532211 11 12334555666666777776554 22 246999975432 34556788
Q ss_pred HHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEEeChHHHHHHHHHHHHCCC
Q 008205 185 LGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRM 247 (574)
Q Consensus 185 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~--~~~~viil~~~~~~~~~il~~a~~~gm 247 (574)
+++.+++.|+.+... .....+..+-...++++-. .+.++| +++...+..+++++++.|+
T Consensus 147 f~~al~~~g~~~~~~--~~~~~~~~~~~~~~~~~L~~~~~~d~i--~~~d~~a~g~l~al~~~g~ 207 (295)
T TIGR02955 147 FRAALEGSDVEISAI--LWADNDKELQRNLLQDLLKKHPDIDYL--VGSAVAAEAAISELRSLHM 207 (295)
T ss_pred HHHHHhcCCcEEEEE--ecCCCcHHHHHHHHHHHHHhCCCcCEE--EeccHHHHHHHHHHHhhCc
Confidence 899998888776532 1111222333344444432 234543 4565667788888888776
No 186
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=96.95 E-value=0.17 Score=48.38 Aligned_cols=199 Identities=12% Similarity=-0.013 Sum_probs=100.7
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHLV 113 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 113 (574)
+||+++|..+.........+..++++.=+.. |+++.+. +.. ++..-.+....+.+.++.+||--... .....
T Consensus 1 ~I~~i~~~~~~~~~~f~~~~~~gi~~~~~~~----gy~~~i~--~~~-~~~~~~~~i~~l~~~~vdgiI~~~~~-~~~~~ 72 (265)
T cd06354 1 KVALVTDVGGLGDKSFNQSAWEGLERAAKEL----GIEYKYV--ESK-SDADYEPNLEQLADAGYDLIVGVGFL-LADAL 72 (265)
T ss_pred CEEEEeCCCCcCchhHHHHHHHHHHHHHHHc----CCeEEEE--ecC-CHHHHHHHHHHHHhCCCCEEEEcCcc-hHHHH
Confidence 5899998621111223333333333332222 4555543 332 33333344556777788888853222 12234
Q ss_pred HHhhccC-CccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHH-cCCeEEEEEEEcCCCCcch-HHHHHHHHh
Q 008205 114 SHIANEF-QVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDY-FGWRNVIALYVDDDHGRNG-IAALGDKLA 190 (574)
Q Consensus 114 a~~~~~~-~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~-~~W~~v~ii~~~~~~g~~~-~~~l~~~~~ 190 (574)
......+ ++|++......+.. +..-++......-....+.++.. .|-++++++..+....... .+.+++.++
T Consensus 73 ~~~~~~~~~~PiV~i~~~~~~~-----~~~~~v~~d~~~a~~~a~~ll~~~~G~~~I~~i~~~~~~~~~~r~~gf~~~~~ 147 (265)
T cd06354 73 KEVAKQYPDQKFAIIDAVVDDP-----PNVASIVFKEEEGSFLAGYLAALMTKTGKVGFIGGMDIPLIRRFEAGFEAGVK 147 (265)
T ss_pred HHHHHHCCCCEEEEEecccCCC-----CcEEEEEecchhHHHHHHHHHHhhcCCCeEEEEecccChHHHHHHHHHHHHHH
Confidence 4555555 89999865322110 11122333333334444466654 3899999997543212222 357788888
Q ss_pred hcC---cEEEEEeecCCCCC-hhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCC
Q 008205 191 EKR---CRLSHKVPLSPKGS-RNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLR 246 (574)
Q Consensus 191 ~~g---~~v~~~~~~~~~~~-~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~g 246 (574)
+.| ..+..........+ ..+-...++++.+.+++.| ++.+...+..+++++++.|
T Consensus 148 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~pdaI-~~~nd~~A~gv~~al~~~g 206 (265)
T cd06354 148 YVNPGVPDIEVLVQYAGSFNDPAKGKEIAQAMYDQGADVI-FAAAGGTGNGVFQAAKEAG 206 (265)
T ss_pred HHhccCCCceEEEEEcCcccCHHHHHHHHHHHHHCCCcEE-EECCCCCchHHHHHHHhcC
Confidence 877 54322211111111 2233344555544456654 4446666778889999887
No 187
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=96.92 E-value=0.36 Score=47.08 Aligned_cols=201 Identities=11% Similarity=-0.053 Sum_probs=108.0
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCChHHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 111 (574)
+||++.+.. ..+-.....+++.+.++ . |+++.+. .+...++....+....++.+++.+||- +.......
T Consensus 1 ~I~vi~~~~~~~f~~~i~~gi~~~a~~----~----g~~v~~~-~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~~~~~~~ 71 (298)
T cd06302 1 TIAFVPKVTGIPYFNRMEEGAKEAAKE----L----GVDAIYV-GPTTADAAGQVQIIEDLIAQGVDAIAVVPNDPDALE 71 (298)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHH----h----CCeEEEE-CCCCCCHHHHHHHHHHHHhcCCCEEEEecCCHHHHH
Confidence 488888753 22222344444444444 1 4544432 233446655556666777778887764 33333223
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHc-CC-eEEEEEEEcCC--CCcchHHHHHH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF-GW-RNVIALYVDDD--HGRNGIAALGD 187 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~-~W-~~v~ii~~~~~--~g~~~~~~l~~ 187 (574)
.....+...++|+|......+. .. ..+....++....+..+++.+... +- ++++++..... ......+.+++
T Consensus 72 ~~~~~~~~~~iPvV~v~~~~~~-~~---~~~~~v~~D~~~~g~~a~~~l~~~~~~~~~I~~l~g~~~~~~~~~R~~Gf~~ 147 (298)
T cd06302 72 PVLKKAREAGIKVVTHDSDVQP-DN---RDYDIEQADNKAIGETLMDSLAEQMGGKGEYAIFVGSLTATNQNAWIDAAKA 147 (298)
T ss_pred HHHHHHHHCCCeEEEEcCCCCC-Cc---ceeEEeccCHHHHHHHHHHHHHHHcCCCCEEEEEeCCCCCcchHHHHHHHHH
Confidence 3334456789999987532211 00 112334566677777777776554 43 69999975432 23445678888
Q ss_pred HHhhcCc-EEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCC
Q 008205 188 KLAEKRC-RLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMM 248 (574)
Q Consensus 188 ~~~~~g~-~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~ 248 (574)
.++++|. .+.....+....+..+-...++++-.. ..+. |++.+...+..+++.+++.|+.
T Consensus 148 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a-i~~~~D~~A~g~~~al~~~g~~ 210 (298)
T cd06302 148 YQKEKYYPMLELVDRQYGDDDADKSYQTAQELLKAYPDLKG-IIGPTSVGIPGAARAVEEAGLK 210 (298)
T ss_pred HHhhcCCCCeEEeCcccCCCCHHHHHHHHHHHHHhCCCceE-EEECCCcchhHHHHHHHhcCCC
Confidence 9988862 122111111112222223344443222 3333 3344556778889999999975
No 188
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=96.91 E-value=0.18 Score=50.51 Aligned_cols=207 Identities=10% Similarity=-0.010 Sum_probs=109.1
Q ss_pred CeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHH
Q 008205 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI 109 (574)
Q Consensus 31 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 109 (574)
..-.||+++|.. ..+-.....++..+.++ . |+.+ .+.+...++..-.+....+.++++.+||-......
T Consensus 58 ~~~~Igvi~~~~~~~f~~~l~~gi~~~~~~----~----gy~~--~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~ 127 (346)
T PRK10401 58 VSDTIGVVVMDVSDAFFGALVKAVDLVAQQ----H----QKYV--LIGNSYHEAEKERHAIEVLIRQRCNALIVHSKALS 127 (346)
T ss_pred CCCEEEEEeCCCCCccHHHHHHHHHHHHHH----C----CCEE--EEEcCCCChHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 345799999853 22222333444444333 1 3444 33444444444344455566677777664221111
Q ss_pred HHHHHHhhccCCcc-EEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHH
Q 008205 110 AHLVSHIANEFQVP-LLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALG 186 (574)
Q Consensus 110 ~~~va~~~~~~~iP-~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~ 186 (574)
...+..+.. ++| ++......+ +..+++ +...+..-+...++.+...|-+++++|..... ......+.++
T Consensus 128 ~~~~~~~~~--~~p~vV~i~~~~~---~~~~~~---V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 199 (346)
T PRK10401 128 DDELAQFMD--QIPGMVLINRVVP---GYAHRC---VCLDNVSGARMATRMLLNNGHQRIGYLSSSHGIEDDAMRRAGWM 199 (346)
T ss_pred hHHHHHHHh--cCCCEEEEecccC---CCCCCE---EEECcHHHHHHHHHHHHHCCCCeEEEEeCCCcCcchHHHHHHHH
Confidence 122334444 355 666543221 111222 44455555666677777789999999974432 3456778889
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
+.+++.|+.+..........+...-...++++.+. .++.| ++.+...+..+++.+++.|+..++-+-|+
T Consensus 200 ~al~~~gi~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai-~~~nd~~A~g~~~al~~~G~~vP~disvi 270 (346)
T PRK10401 200 SALKEQGIIPPESWIGTGTPDMQGGEAAMVELLGRNLQLTAV-FAYNDNMAAGALTALKDNGIAIPLHLSII 270 (346)
T ss_pred HHHHHcCCCCChhheecCCCChHHHHHHHHHHHcCCCCCcEE-EECCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 99998887532211111111222222344444332 34544 44566777889999999998765544443
No 189
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=96.90 E-value=0.11 Score=49.62 Aligned_cols=198 Identities=11% Similarity=0.011 Sum_probs=103.5
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHLV 113 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 113 (574)
+||+++|... ........+..++++.-+.. |+.+.+ .++. ++....+....+...++.+||-.... ....+
T Consensus 1 ~Igvi~~~~~-~~~~f~~~l~~gi~~~~~~~----gy~~~~--~~~~-~~~~~~~~~~~l~~~~vdgiii~~~~-~~~~~ 71 (260)
T cd06304 1 KVALVYDGGG-GDKSFNQSAYEGLEKAEKEL----GVEVKY--VESV-EDADYEPNLRQLAAQGYDLIFGVGFG-FMDAV 71 (260)
T ss_pred CEEEEecCCC-CcchHHHHHHHHHHHHHHhc----CceEEE--EecC-CHHHHHHHHHHHHHcCCCEEEECCcc-hhHHH
Confidence 5899998511 11234444555555543332 454444 4443 44444445556666788876643322 12334
Q ss_pred HHhhccC-CccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHc-CCeEEEEEEEcC-CCCcchHHHHHHHHh
Q 008205 114 SHIANEF-QVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF-GWRNVIALYVDD-DHGRNGIAALGDKLA 190 (574)
Q Consensus 114 a~~~~~~-~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~-~W~~v~ii~~~~-~~g~~~~~~l~~~~~ 190 (574)
....... ++|++......+. ....+ .+...+..-+...+.++..+ |-+++++|.... .......+.+++.++
T Consensus 72 ~~~~~~~~~ipvv~~~~~~~~--~~~~~---~v~~d~~~~~~~a~~l~~~~~g~~~I~~i~~~~~~~~~~R~~Gf~~~~~ 146 (260)
T cd06304 72 EKVAKEYPDVKFAIIDGVVDA--PPNVA---SYVFREYEGSYLAGVLAALMTKTGKVGFVGGMPIPEVNRFINGFAAGAK 146 (260)
T ss_pred HHHHHHCCCCEEEEecCccCC--CCCee---eeecchHHHHHHHHHHHHHhccCCceEEEeccccHHHHHHHHHHHHHHH
Confidence 3444433 7898876432211 01112 23334443444445666655 889999997532 223345677888888
Q ss_pred hcCcEEEEEeecCCCC-ChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCC
Q 008205 191 EKRCRLSHKVPLSPKG-SRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLR 246 (574)
Q Consensus 191 ~~g~~v~~~~~~~~~~-~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~g 246 (574)
+.+..+.......... +..+-...++++.+..++.| ++.+...+..++.++++.|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai-~~~~d~~A~gv~~al~~~g 202 (260)
T cd06304 147 SVNPDITVLVIYTGSFFDPAKGKEAALALIDQGADVI-FAAAGGTGPGVIQAAKEAG 202 (260)
T ss_pred HhCCCcEEEEEEecCccCcHHHHHHHHHHHhCCCCEE-EEcCCCCchHHHHHHHHcC
Confidence 8876433211111111 12223344555444456654 5556666778899999887
No 190
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=96.90 E-value=0.1 Score=49.98 Aligned_cols=200 Identities=13% Similarity=0.045 Sum_probs=109.6
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHLV 113 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 113 (574)
+||++.|.+..+......++.-+.++. . |+++.+. .. +. .+....+...++.+||-...+. ..
T Consensus 1 ~ig~i~~~~~~~~~~~~~gi~~~~~~~---~----g~~~~~~--~~--~~---~~~~~~l~~~~vdGiI~~~~~~---~~ 63 (265)
T cd01543 1 RVALLVETSSSYGRGVLRGIARYAREH---G----PWSIYLE--PR--GL---QEPLRWLKDWQGDGIIARIDDP---EM 63 (265)
T ss_pred CeEEEecccchhhHHHHHHHHHHHHhc---C----CeEEEEe--cc--cc---hhhhhhccccccceEEEECCCH---HH
Confidence 489999865433334444444444432 2 4554432 22 11 2333445566788777533222 12
Q ss_pred HHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCC-CcchHHHHHHHHhhc
Q 008205 114 SHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDH-GRNGIAALGDKLAEK 192 (574)
Q Consensus 114 a~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~-g~~~~~~l~~~~~~~ 192 (574)
...+...++|+|......+. +.+-++.......+..+++.+...|-++++++...... .....+.+++.+++.
T Consensus 64 ~~~l~~~~~PvV~~~~~~~~------~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~ 137 (265)
T cd01543 64 AEALQKLGIPVVDVSGSREK------PGIPRVTTDNAAIGRMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEA 137 (265)
T ss_pred HHHHhhCCCCEEEEeCccCC------CCCCEEeeCHHHHHHHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHc
Confidence 23445679999987543221 12334666777777778888888899999998644331 234567788888888
Q ss_pred CcEEEEEeec--CCCCChhhHHHHHHHh-hcC-CCeEEEEEeChHHHHHHHHHHHHCCCCCCC-eEEEEe
Q 008205 193 RCRLSHKVPL--SPKGSRNQIIDTLLTV-SSM-MSRILILHTYDIWGLEVLNAAKHLRMMESG-YVWIVT 257 (574)
Q Consensus 193 g~~v~~~~~~--~~~~~~~~~~~~l~~i-k~~-~~~viil~~~~~~~~~il~~a~~~gm~~~~-~~~i~~ 257 (574)
|+.+...... ....+..+....++++ +.. ..+ .|++++...+..+++.+++.|+..++ ...+.-
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-ai~~~~d~~a~g~~~~l~~~g~~vp~di~vigf 206 (265)
T cd01543 138 GYECSFFYRGLSTDAQSWEEEQEELAQWLQSLPKPV-GIFACTDARARQLLEACRRAGIAVPEEVAVLGV 206 (265)
T ss_pred CCccccccCccccccccHHHHHHHHHHHHhcCCCCc-EEEecChHHHHHHHHHHHHhCCCCCCceEEEee
Confidence 8765211111 1001112223344443 332 344 44555667778888999998875443 344443
No 191
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=96.87 E-value=0.17 Score=48.96 Aligned_cols=152 Identities=14% Similarity=0.072 Sum_probs=88.7
Q ss_pred HHhHhcCcEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEE
Q 008205 91 LTLLENETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIA 170 (574)
Q Consensus 91 ~~l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~i 170 (574)
..+...++.++|--....... ....+...++|+|......+ +..-.+.+.....+...++.+...|-+++++
T Consensus 50 ~~~~~~~~dgiii~~~~~~~~-~~~~~~~~~ipvV~~~~~~~-------~~~~~v~~d~~~~g~~~~~~L~~~g~~~i~~ 121 (283)
T cd06279 50 ALVVSALVDGFIVYGVPRDDP-LVAALLRRGLPVVVVDQPLP-------PGVPSVGIDDRAAAREAARHLLDLGHRRIGI 121 (283)
T ss_pred HHHHhcCCCEEEEeCCCCChH-HHHHHHHcCCCEEEEecCCC-------CCCCEEeeCcHHHHHHHHHHHHHcCCCcEEE
Confidence 455666888777533222222 33445678999998743221 1123355667777888888888889999999
Q ss_pred EEEcC-------------------CCCcchHHHHHHHHhhcCcEEEEEeecC-CCCChhhHHHHHHHhhcCC--CeEEEE
Q 008205 171 LYVDD-------------------DHGRNGIAALGDKLAEKRCRLSHKVPLS-PKGSRNQIIDTLLTVSSMM--SRILIL 228 (574)
Q Consensus 171 i~~~~-------------------~~g~~~~~~l~~~~~~~g~~v~~~~~~~-~~~~~~~~~~~l~~ik~~~--~~viil 228 (574)
+..+. .......+.+++.+++.|+.+.....+. ...+..+....++++-.+. .+ .|+
T Consensus 122 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-ai~ 200 (283)
T cd06279 122 LGLRLGRDRNTGRVTDERLASATFSVARERLEGYLEALEEAGIDISDVPIWEIPENDRASGEEAARELLDASPRPT-AIL 200 (283)
T ss_pred ecCcccccccccccccccccccccccHHHHHHHHHHHHHHcCCCCChheEEecCCCchHHHHHHHHHHHcCCCCCc-EEE
Confidence 97532 1123456778888888775432111111 1112233445555553333 34 344
Q ss_pred EeChHHHHHHHHHHHHCCCCCCC
Q 008205 229 HTYDIWGLEVLNAAKHLRMMESG 251 (574)
Q Consensus 229 ~~~~~~~~~il~~a~~~gm~~~~ 251 (574)
+++...+..+++.+++.|+..++
T Consensus 201 ~~~d~~a~gv~~al~~~g~~ip~ 223 (283)
T cd06279 201 CMSDVLALGALQVARELGLRVPE 223 (283)
T ss_pred ECCcHHHHHHHHHHHHcCCCCCC
Confidence 55566777899999999985443
No 192
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=96.85 E-value=0.1 Score=50.82 Aligned_cols=185 Identities=11% Similarity=0.096 Sum_probs=104.8
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHLV 113 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 113 (574)
+||++-..+...-.....||+-++.+. + ... ..+++.+.+.+.|.....+.+.++...++..|+--. ...+..+
T Consensus 1 ~v~i~~~~~~~~~~~~~~gf~~~L~~~---g-~~~-~~~~~~~~~a~~d~~~~~~~~~~l~~~~~DlIi~~g-t~aa~~~ 74 (294)
T PF04392_consen 1 KVGILQFISHPALDDIVRGFKDGLKEL---G-YDE-KNVEIEYKNAEGDPEKLRQIARKLKAQKPDLIIAIG-TPAAQAL 74 (294)
T ss_dssp EEEEEESS--HHHHHHHHHHHHHHHHT---T---C-CCEEEEEEE-TT-HHHHHHHHHHHCCTS-SEEEEES-HHHHHHH
T ss_pred CeEEEEEeccHHHHHHHHHHHHHHHHc---C-Ccc-ccEEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeC-cHHHHHH
Confidence 578887776433345677777777664 2 212 457888888899988887777777777777777433 3334444
Q ss_pred HHhhccCCccEEecccCCCCcCC----CCCC--ceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEcCCC-CcchHHH
Q 008205 114 SHIANEFQVPLLSFAATDPSLSS----LQYP--FFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVDDDH-GRNGIAA 184 (574)
Q Consensus 114 a~~~~~~~iP~Is~~~~~~~ls~----~~~~--~~~r~~ps~~~~~~ai~~ll~~~--~W~~v~ii~~~~~~-g~~~~~~ 184 (574)
....... +|+|-.+.++|.-.. ...| ++.-+. +......-.++++++ +-++++++|++++- +....+.
T Consensus 75 ~~~~~~~-iPVVf~~V~dp~~~~l~~~~~~~~~nvTGv~--~~~~~~~~l~l~~~l~P~~k~igvl~~~~~~~~~~~~~~ 151 (294)
T PF04392_consen 75 AKHLKDD-IPVVFCGVSDPVGAGLVDSLDRPGKNVTGVS--ERPPIEKQLELIKKLFPDAKRIGVLYDPSEPNSVAQIEQ 151 (294)
T ss_dssp HHH-SS--S-EEEECES-TTTTTS-S-SSS--SSEEEEE--E---HHHHHHHHHHHSTT--EEEEEEETT-HHHHHHHHH
T ss_pred HHhcCCC-cEEEEEeccChhhhhccccccCCCCCEEEEE--CCcCHHHHHHHHHHhCCCCCEEEEEecCCCccHHHHHHH
Confidence 4444333 999987665654322 1222 443333 333345566666664 46899999977643 3456778
Q ss_pred HHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh
Q 008205 185 LGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD 232 (574)
Q Consensus 185 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~ 232 (574)
+++.+++.|+++.... ++ +..++...++.+.. +.+++++..+.
T Consensus 152 ~~~~a~~~g~~l~~~~-v~---~~~~~~~~~~~l~~-~~da~~~~~~~ 194 (294)
T PF04392_consen 152 LRKAAKKLGIELVEIP-VP---SSEDLEQALEALAE-KVDALYLLPDN 194 (294)
T ss_dssp HHHHHHHTT-EEEEEE-ES---SGGGHHHHHHHHCT-T-SEEEE-S-H
T ss_pred HHHHHHHcCCEEEEEe-cC---cHhHHHHHHHHhhc-cCCEEEEECCc
Confidence 8888888998876542 33 56678888888854 45666665543
No 193
>PRK09526 lacI lac repressor; Reviewed
Probab=96.83 E-value=0.39 Score=47.90 Aligned_cols=205 Identities=15% Similarity=0.081 Sum_probs=111.0
Q ss_pred CeEEEEEEeccCC-ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc--CCCh
Q 008205 31 PVLNIGAVFALNS-TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG--PQFS 107 (574)
Q Consensus 31 ~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG--p~~s 107 (574)
..-.||+++|... ..-.....++.-+.++ .|+.+.+...+. .+...-.+....+.++++.+||- |..+
T Consensus 62 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~i~~~~~-~~~~~~~~~l~~l~~~~vdGiii~~~~~~ 132 (342)
T PRK09526 62 QSLTIGLATTSLALHAPSQIAAAIKSRADQ--------LGYSVVISMVER-SGVEACQAAVNELLAQRVSGVIINVPLED 132 (342)
T ss_pred CCceEEEEeCCCCcccHHHHHHHHHHHHHH--------CCCEEEEEeCCC-ChHHHHHHHHHHHHhcCCCEEEEecCCCc
Confidence 3457999998642 1112334444444432 246665543222 12223234455667778887663 4333
Q ss_pred HHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHH
Q 008205 108 VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAAL 185 (574)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l 185 (574)
.....+. ....++|+|..... + .... -.+.+++..-+..+++.|...|.++++++..... ......+.+
T Consensus 133 ~~~~~~~--~~~~~iPvV~~d~~-~---~~~~---~~V~~d~~~~~~~a~~~L~~~G~~~I~~l~g~~~~~~~~~R~~Gf 203 (342)
T PRK09526 133 ADAEKIV--ADCADVPCLFLDVS-P---QSPV---NSVSFDPEDGTRLGVEHLVELGHQRIALLAGPESSVSARLRLAGW 203 (342)
T ss_pred chHHHHH--hhcCCCCEEEEecc-C---CCCC---CEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCCccccHHHHHHHH
Confidence 2222221 12358999986431 1 1112 2345566666677788777789999999975432 234566788
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
++.+++.|+.+... +....+..+-...+.++... ..+. |++++...+..+++.+++.|+..++-+-|+
T Consensus 204 ~~al~~~gi~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~a-i~~~~d~~A~g~~~al~~~g~~vP~disvi 273 (342)
T PRK09526 204 LEYLTDYQLQPIAV--REGDWSAMSGYQQTLQMLREGPVPSA-ILVANDQMALGVLRALHESGLRVPGQISVI 273 (342)
T ss_pred HHHHHHcCCCcceE--EeCCCchHHHHHHHHHHhcCCCCCcE-EEEcCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 88998888754321 11111222222334444322 3443 444566777889999999998765544333
No 194
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=96.83 E-value=0.24 Score=49.18 Aligned_cols=206 Identities=10% Similarity=0.039 Sum_probs=112.3
Q ss_pred eEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHH
Q 008205 32 VLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIA 110 (574)
Q Consensus 32 ~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~ 110 (574)
.-.||+++|.- ..+-.....++..+.++ .|+++.+ .+...++..-.+....+++.++.+||-.......
T Consensus 63 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~~~~~~vdgiI~~~~~~~~ 132 (331)
T PRK14987 63 SRAIGVLLPSLTNQVFAEVLRGIESVTDA--------HGYQTML--AHYGYKPEMEQERLESMLSWNIDGLILTERTHTP 132 (331)
T ss_pred CCEEEEEeCCCcchhHHHHHHHHHHHHHH--------CCCEEEE--ecCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCH
Confidence 45799999853 22222334444444433 2455544 4444455443344555667788877642222122
Q ss_pred HHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC-CCcchHHHHHHHH
Q 008205 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD-HGRNGIAALGDKL 189 (574)
Q Consensus 111 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~-~g~~~~~~l~~~~ 189 (574)
.. ...+...++|+|....... .. ... .+.+....-+..+++.|...|.++++++..... ......+.+++.+
T Consensus 133 ~~-~~~l~~~~iPvV~~~~~~~---~~-~~~--~V~~Dn~~~~~~a~~~L~~~Gh~~I~~i~~~~~~~~~~R~~Gf~~al 205 (331)
T PRK14987 133 RT-LKMIEVAGIPVVELMDSQS---PC-LDI--AVGFDNFEAARQMTTAIIARGHRHIAYLGARLDERTIIKQKGYEQAM 205 (331)
T ss_pred HH-HHHHHhCCCCEEEEecCCC---CC-CCc--eEEeCcHHHHHHHHHHHHHCCCceEEEEcCCCcccHHHHHHHHHHHH
Confidence 22 3345677999997532111 11 112 355566666777778777789999999964322 2234567888888
Q ss_pred hhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 190 AEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 190 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
.+.|+.... .......+..+-...++++.+. ..+. |++++...+.-+++++++.|+..++-+-|+
T Consensus 206 ~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~a-i~~~nD~~A~g~~~al~~~g~~vP~disvi 272 (331)
T PRK14987 206 LDAGLVPYS-VMVEQSSSYSSGIELIRQARREYPQLDG-VFCTNDDLAVGAAFECQRLGLKVPDDMAIA 272 (331)
T ss_pred HHcCCCccc-eeecCCCChhhHHHHHHHHHhcCCCCCE-EEECCcHHHHHHHHHHHHcCCCCCCccEEE
Confidence 888863110 1111111112223344554333 3454 444566778888999999998766555444
No 195
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=96.75 E-value=0.24 Score=48.61 Aligned_cols=209 Identities=9% Similarity=0.027 Sum_probs=112.4
Q ss_pred CeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHH
Q 008205 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI 109 (574)
Q Consensus 31 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 109 (574)
..-+||+++|.. ..+-.....++..+.++. |+.+.+ .+...+...-......+...++.+||=-.....
T Consensus 34 ~~~~ig~v~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~ 103 (309)
T PRK11041 34 ESRTILVIVPDICDPFFSEIIRGIEVTAAEH--------GYLVLI--GDCAHQNQQEKTFVNLIITKQIDGMLLLGSRLP 103 (309)
T ss_pred CCcEEEEEeCCCcCccHHHHHHHHHHHHHHC--------CCEEEE--EeCCCChHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 446899999854 323334455555555542 344443 344445444444555667778887664222111
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCC--CcchHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDH--GRNGIAALGD 187 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~--g~~~~~~l~~ 187 (574)
..... .......|++......+. ..+++ +..+....+...++.+...|-++++++...... .....+.|++
T Consensus 104 ~~~~~-~~~~~~~pvv~~~~~~~~---~~~~~---V~~Dn~~~g~~a~~~l~~~G~~~I~~l~~~~~~~~~~~R~~Gf~~ 176 (309)
T PRK11041 104 FDASK-EEQRNLPPMVMANEFAPE---LELPT---VHIDNLTAAFEAVNYLHELGHKRIACIAGPEEMPLCHYRLQGYVQ 176 (309)
T ss_pred hHHHH-HHHhcCCCEEEEccccCC---CCCCE---EEECcHHHHHHHHHHHHHcCCceEEEEeCCccccchHHHHHHHHH
Confidence 11111 122223467764322211 11232 444666667777787777799999999744322 3346778888
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEe
Q 008205 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVT 257 (574)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~ 257 (574)
.+++.|+.+..........+.......++++.+. ..+.|+ +++...+..++++.++.|+..++-.+|++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~gv~~al~~~g~~ip~di~vvg 247 (309)
T PRK11041 177 ALRRCGITVDPQYIARGDFTFEAGAKALKQLLDLPQPPTAVF-CHSDVMALGALSQAKRMGLRVPQDLSIIG 247 (309)
T ss_pred HHHHcCCCCCHHHeEeCCCCHHHHHHHHHHHHcCCCCCCEEE-EcCcHHHHHHHHHHHHcCCCCCcceEEEE
Confidence 8888887543211111112223334455555433 345554 45666676888999998876554455543
No 196
>PRK09492 treR trehalose repressor; Provisional
Probab=96.71 E-value=0.4 Score=47.21 Aligned_cols=191 Identities=14% Similarity=0.055 Sum_probs=107.1
Q ss_pred CeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCC-hH
Q 008205 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQF-SV 108 (574)
Q Consensus 31 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~-s~ 108 (574)
..-.||+++|.. ...-.....++ .+.+++. |+++ .+.++..++....+....+...++.++|-... ..
T Consensus 61 ~~~~Ig~i~~~~~~~~~~~~~~~i---~~~~~~~-----gy~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 130 (315)
T PRK09492 61 SDKVVGIIVSRLDSLSENQAVRTM---LPAFYEQ-----GYDP--IIMESQFSPEKVNEHLGVLKRRNVDGVILFGFTGI 130 (315)
T ss_pred CCCeEEEEecCCcCcccHHHHHHH---HHHHHHc-----CCeE--EEEecCCChHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 345799999853 22222333333 3333332 4554 44555556555444455566678888775332 22
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEc-C--CCCcchHHHH
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVD-D--DHGRNGIAAL 185 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~-~--~~g~~~~~~l 185 (574)
.. .....+++|++......+ . +-.+.++...-+..+++.+...|-++++++... . ..+....+.+
T Consensus 131 ~~----~~l~~~~~pvv~i~~~~~-----~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf 198 (315)
T PRK09492 131 TE----EMLAPWQDKLVLLARDAK-----G---FSSVCYDDEGAIKLLMQRLYDQGHRHISYLGVDHSDVTTGKRRHQAY 198 (315)
T ss_pred cH----HHHHhcCCCEEEEeccCC-----C---CcEEEECcHHHHHHHHHHHHHcCCCeEEEEcCCcccchhHHHHHHHH
Confidence 22 223345678776542211 1 223445566566667777767799999999632 2 2335677889
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCC
Q 008205 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRM 247 (574)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm 247 (574)
++.+++.|+.+... .. ..+...-...++++.+.+++.|+ +++...+..+++++++.|+
T Consensus 199 ~~al~~~g~~~~~~--~~-~~~~~~~~~~~~~~l~~~~~ai~-~~~D~~A~g~~~al~~~g~ 256 (315)
T PRK09492 199 LAFCKQHKLTPVAA--LG-GLSMQSGYELVAKVLTPETTALV-CATDTLALGASKYLQEQGR 256 (315)
T ss_pred HHHHHHcCCCceee--cC-CCCchHHHHHHHHHhhcCCCEEE-EcCcHHHHHHHHHHHHcCC
Confidence 99999998764321 11 11222222344444334566554 4455777789999999986
No 197
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins. bacterial proteins, eukaryotic ones are in PBPe
Probab=96.63 E-value=0.0025 Score=58.38 Aligned_cols=79 Identities=20% Similarity=0.267 Sum_probs=58.9
Q ss_pred eEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhcccccccccccc
Q 008205 472 LRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKIFFN 551 (574)
Q Consensus 472 ~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~~~~ 551 (574)
|+|++.. .+.|+... ..+..+.||++|+++.+.+.+|++ ++++.. .|..++..|.+|++|++
T Consensus 2 l~v~~~~--~~~p~~~~-~~~g~~~G~~~~~~~~~~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~------ 63 (219)
T smart00062 2 LRVGTNG--DYPPFSFA-DEDGELTGFDVDLAKAIAKELGLK--VEFVEV-------SFDNLLTALKSGKIDVV------ 63 (219)
T ss_pred EEEEecC--CCCCcEEE-CCCCCcccchHHHHHHHHHHhCCe--EEEEec-------cHHHHHHHHHCCcccEE------
Confidence 5677742 34554432 234469999999999999999988 888776 79999999999999999
Q ss_pred eeeeEEEEeeCc----eeeecc
Q 008205 552 LVILFAILANGG----FLVPCR 569 (574)
Q Consensus 552 ~~~~~~~~~~~~----~~v~f~ 569 (574)
+.+...+.+|+ ++.|++
T Consensus 64 -~~~~~~~~~~~~~~~~~~~~~ 84 (219)
T smart00062 64 -AAGMTITPERAKQVDFSDPYY 84 (219)
T ss_pred -eccccCCHHHHhheeecccee
Confidence 66555566664 445544
No 198
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions. PBPs have two cell-membrane translocation functions: bind substrate, and interact with the membrane bound complex. A diverse group of periplasmic transport receptors for lysine/arginine/ornithine (LAO), glutamine, histidine, sulfate, phosphate, molybdate, and methanol are included in the PBPb CD.
Probab=96.57 E-value=0.0035 Score=57.49 Aligned_cols=72 Identities=17% Similarity=0.252 Sum_probs=55.5
Q ss_pred EEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhcccccccccccce
Q 008205 473 RIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKIFFNL 552 (574)
Q Consensus 473 ~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~~~~~ 552 (574)
+|++.. .++|+... .++..+.|+++|+++++.+.+|.+ ++++.. .|..++..|.+|++|++
T Consensus 2 ~i~~~~--~~~p~~~~-~~~g~~~G~~~~~~~~~~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~------- 62 (218)
T cd00134 2 TVGTAG--TYPPFSFR-DANGELTGFDVDLAKAIAKELGVK--VKFVEV-------DWDGLITALKSGKVDLI------- 62 (218)
T ss_pred EEecCC--CCCCeeEE-CCCCCEEeeeHHHHHHHHHHhCCe--EEEEeC-------CHHHHHHHHhcCCcCEE-------
Confidence 455543 23344332 345679999999999999999987 888887 59999999999999999
Q ss_pred eeeEEEEeeCc
Q 008205 553 VILFAILANGG 563 (574)
Q Consensus 553 ~~~~~~~~~~~ 563 (574)
+.....+++|+
T Consensus 63 ~~~~~~~~~~~ 73 (218)
T cd00134 63 AAGMTITPERA 73 (218)
T ss_pred eecCcCCHHHH
Confidence 65556677775
No 199
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=96.45 E-value=0.39 Score=46.02 Aligned_cols=198 Identities=11% Similarity=0.036 Sum_probs=104.7
Q ss_pred EEEEEeccCC--ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEE-cCCChHHH
Q 008205 34 NIGAVFALNS--TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAII-GPQFSVIA 110 (574)
Q Consensus 34 ~IG~l~~~~~--~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii-Gp~~s~~~ 110 (574)
+||++.+.+. ..+......+..++++.-++. |+.+.+... ..+. ....+++.++| .+..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~----g~~~~~~~~--~~~~--------~~~~~~vdgii~~~~~~~-- 64 (270)
T cd01544 1 RIAIVQWYSEEEELDDPYYLSIRLGIEKRAQEL----GIELTKFFR--DDDL--------LEILEDVDGIIAIGKFSQ-- 64 (270)
T ss_pred CeEEEEeccccccccCccHHHHHHHHHHHHHHc----CCEEEEEec--cchh--------HHhccCcCEEEEecCCCH--
Confidence 5888888541 122233444444444443332 455554432 2211 12345566554 222222
Q ss_pred HHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC-------CCcchHH
Q 008205 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD-------HGRNGIA 183 (574)
Q Consensus 111 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~-------~g~~~~~ 183 (574)
.....+...++|+|...... .+..++ .+..++...+..+++.+...|-++++++..... ......+
T Consensus 65 -~~~~~~~~~~~pvV~~~~~~---~~~~~~---~v~~D~~~a~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~~~~~R~~ 137 (270)
T cd01544 65 -EQLAKLAKLNPNLVFVDSNP---APDGFD---SVVPDFEQAVEKALDYLLELGHTRIGFIGGEEKTTDGHEYIEDPRET 137 (270)
T ss_pred -HHHHHHHhhCCCEEEECCCC---CCCCCC---EEEECHHHHHHHHHHHHHHcCCCcEEEECCCcccccccchhhhHHHH
Confidence 22334556689999864321 222233 245566767777888877789999999975432 2344567
Q ss_pred HHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHh-hcC---CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 184 ALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTV-SSM---MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 184 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i-k~~---~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
.+++.+.+.|.. .....+....+..+....++++ +.. ..+ .|++++...+..+++.+++.|+..++-+.|+
T Consensus 138 gf~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-ai~~~~d~~a~g~~~~l~~~g~~vp~di~v~ 212 (270)
T cd01544 138 AFREYMKEKGLY-DPELIYIGDFTVESGYQLMKEALKSLGDNLPT-AFFIASDPMAIGALRALQEAGIKVPEDVSVI 212 (270)
T ss_pred HHHHHHHHcCCC-ChheEeeCCCCHHHHHHHHHHHHhccCCCCCC-EEEEcCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 788888888741 1000111111222222334443 222 234 4455667778889999999998655444443
No 200
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=96.09 E-value=1.4 Score=43.13 Aligned_cols=171 Identities=8% Similarity=-0.040 Sum_probs=94.7
Q ss_pred CcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecC
Q 008205 69 GTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQ 147 (574)
Q Consensus 69 g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~p 147 (574)
|+++ .+.+...++..-.+....++.+++.+||= |............+...+||+|......+ . .+....+..
T Consensus 28 g~~v--~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~~~~~~~~l~~~~~~~iPvV~~d~~~~---~--~~~~~~V~~ 100 (302)
T TIGR02634 28 GAKV--FVQSANGNEAKQISQIENLIARGVDVLVIIPQNGQVLSNAVQEAKDEGIKVVAYDRLIN---D--ADIDFYLSF 100 (302)
T ss_pred CCEE--EEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHCCCeEEEecCcCC---C--CCccEEEec
Confidence 4544 44566666665556677777888777653 33333233444556778999998743221 1 122234556
Q ss_pred ChHHHHHHHHHHHHHcCCe-EEEEEEEcCC--CCcchHHHHHHHHhhc----CcEEEEEeecCCCCChhhHHHHHHHhh-
Q 008205 148 SDLYQMAAIADIVDYFGWR-NVIALYVDDD--HGRNGIAALGDKLAEK----RCRLSHKVPLSPKGSRNQIIDTLLTVS- 219 (574)
Q Consensus 148 s~~~~~~ai~~ll~~~~W~-~v~ii~~~~~--~g~~~~~~l~~~~~~~----g~~v~~~~~~~~~~~~~~~~~~l~~ik- 219 (574)
+....+..+++.+...+-+ +++++..+.. ......+.+++.+++. ++.+.... ........+....++++-
T Consensus 101 d~~~~g~~~~~~L~~~g~~~~i~~i~g~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~ 179 (302)
T TIGR02634 101 DNEKVGEMQARAVLEAAPKGNYFLMGGSPTDNNAKLLRGGQMKVLQPAIDSGDIKIVGDQ-WVDGWLPENALRIMENALT 179 (302)
T ss_pred CHHHHHHHHHHHHHhhCCCCCEEEEeCCCCCcchHHHHHHHHHHHhhhccCCCeEEecCc-CCCCCCHHHHHHHHHHHHH
Confidence 7777788888877666555 6888764322 2233456666677653 24432111 111112233344555543
Q ss_pred c--CCCeEEEEEeChHHHHHHHHHHHHCCCC
Q 008205 220 S--MMSRILILHTYDIWGLEVLNAAKHLRMM 248 (574)
Q Consensus 220 ~--~~~~viil~~~~~~~~~il~~a~~~gm~ 248 (574)
+ ...+.| ++++...+.-+++++++.|+.
T Consensus 180 ~~~~~~~aI-~~~~D~~A~g~~~al~~~g~~ 209 (302)
T TIGR02634 180 ANDNKVDAV-VASNDATAGGAIQALTAQGLA 209 (302)
T ss_pred hCCCCccEE-EECCCchHHHHHHHHHHCCCC
Confidence 2 234543 444556677888999998874
No 201
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=95.93 E-value=1.5 Score=42.96 Aligned_cols=191 Identities=12% Similarity=0.006 Sum_probs=103.7
Q ss_pred CeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCChH
Q 008205 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSV 108 (574)
Q Consensus 31 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~ 108 (574)
..-.||+++|.- ...-.....++.-+.+ +. |+.+- +.++..++..-.+....+...++.++|- |....
T Consensus 58 ~~~~Ig~i~~~~~~~~~~~~~~~i~~~~~---~~-----gy~~~--i~~~~~~~~~~~~~~~~l~~~~vdGvIi~~~~~~ 127 (311)
T TIGR02405 58 SDKVVAVIVSRLDSPSENLAVSGMLPVFY---TA-----GYDPI--IMESQFSPQLTNEHLSVLQKRNVDGVILFGFTGC 127 (311)
T ss_pred CCCEEEEEeCCcccccHHHHHHHHHHHHH---HC-----CCeEE--EecCCCChHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 344799999752 2111122333333222 22 45543 3444445544333444455667777663 22211
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEc-C--CCCcchHHHH
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVD-D--DHGRNGIAAL 185 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~-~--~~g~~~~~~l 185 (574)
... ....+++|+|......+ ..+ .+.+++..-+..+++.+...|-+++++|... . ..+....+.+
T Consensus 128 ~~~----~l~~~~~p~V~i~~~~~-----~~~---~V~~D~~~~~~~a~~~L~~~Ghr~I~~i~~~~~~~~~~~~R~~gf 195 (311)
T TIGR02405 128 DEE----ILESWNHKAVVIARDTG-----GFS---SVCYDDYGAIELLMANLYQQGHRHISFLGVDPSDKTTGLMRHNAY 195 (311)
T ss_pred CHH----HHHhcCCCEEEEecCCC-----Ccc---EEEeCcHHHHHHHHHHHHHcCCCcEEEEccCcccchhHHHHHHHH
Confidence 111 22346788887643211 112 3555666666677777777899999999632 2 2345667889
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCC
Q 008205 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRM 247 (574)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm 247 (574)
++.+++.|+.... .....+..+....++++.+.+++.| ++++...+..+++.+.+.|+
T Consensus 196 ~~a~~~~gi~~~~---~~~~~~~~~~~~~~~~~l~~~~tAi-~~~~D~~A~g~~~~l~~~g~ 253 (311)
T TIGR02405 196 LAYCESANLEPIY---QTGQLSHESGYVLTDKVLKPETTAL-VCATDTLALGAAKYLQELDR 253 (311)
T ss_pred HHHHHHcCCCcee---eeCCCCHHHHHHHHHHHHhcCCCEE-EECCcHHHHHHHHHHHHcCC
Confidence 9999999975221 1111122222334444433345544 45677778888999999885
No 202
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=95.46 E-value=1.3 Score=42.08 Aligned_cols=196 Identities=12% Similarity=0.020 Sum_probs=99.3
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHLV 113 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 113 (574)
+||++++-. ......-.+...+++++.+.. |.+ +.+.+...++....+.+.++.++|..+||+.. .....++
T Consensus 1 kva~l~~g~-~~D~~~n~~~~~G~~~~~~~~----gv~--~~~~e~~~~~~~~~~~i~~~~~~g~dlIi~~g-~~~~~~~ 72 (258)
T cd06353 1 KVAFVYVGP-IGDQGWNYAHDEGRKAAEKAL----GVE--VTYVENVPEGADAERVLRELAAQGYDLIFGTS-FGFMDAA 72 (258)
T ss_pred CEEEEEeCC-CCccchhHHHHHHHHHHHHhc----CCe--EEEEecCCchHhHHHHHHHHHHcCCCEEEECc-hhhhHHH
Confidence 478888732 111223333444555554432 344 44445544566667777888889999999844 3444455
Q ss_pred HHhhccC-CccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCC-CcchHHHHHHHHhh
Q 008205 114 SHIANEF-QVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDH-GRNGIAALGDKLAE 191 (574)
Q Consensus 114 a~~~~~~-~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~-g~~~~~~l~~~~~~ 191 (574)
..++..+ ++.++...+..+ .++-..+.|+... ...++-.++.++..- .+|++|...+.. .......|.+-++.
T Consensus 73 ~~vA~~~p~~~F~~~d~~~~--~~Nv~~~~~~~~e-~~ylaG~~Aa~~t~t--~kVG~I~g~~~~~~~~~~~gF~~G~~~ 147 (258)
T cd06353 73 LKVAKEYPDVKFEHCSGYKT--APNVGSYFARIYE-GRYLAGVVAGKMTKT--NKVGYVAAFPIPEVVRGINAFALGARS 147 (258)
T ss_pred HHHHHHCCCCEEEECCCCCC--CCCeeeEechhhH-HHHHHHHHHHHhhcC--CcEEEEcCcccHHHHHHHHHHHHHHHH
Confidence 6666554 444443322111 1111223343332 123444455554433 589999754321 12233455554443
Q ss_pred c--CcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCC
Q 008205 192 K--RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLR 246 (574)
Q Consensus 192 ~--g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~g 246 (574)
. ++++.... .....+...-....+.+.+.++++|+-.+. ...++.+|++.|
T Consensus 148 ~~p~~~v~~~~-~g~~~D~~~a~~~a~~l~~~G~DvI~~~~~---~~g~~~aa~~~g 200 (258)
T cd06353 148 VNPDATVKVIW-TGSWFDPAKEKEAALALIDQGADVIYQHTD---SPGVIQAAEEKG 200 (258)
T ss_pred HCCCcEEEEEE-ecCCCCcHHHHHHHHHHHHCCCcEEEecCC---ChHHHHHHHHhC
Confidence 3 33333221 111112223345556666789997777762 245788888876
No 203
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=95.00 E-value=3.8 Score=39.89 Aligned_cols=162 Identities=8% Similarity=-0.026 Sum_probs=82.2
Q ss_pred CCCCHHHHHHHHHHhHhcCcEEEEc-CCChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecC-ChHHHHHHH
Q 008205 79 TNYSRFLGMVEALTLLENETVAIIG-PQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQ-SDLYQMAAI 156 (574)
Q Consensus 79 ~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~p-s~~~~~~ai 156 (574)
...++..-.+....++++++.+||= |..+.........+...+||+|......+. . .....+.. .....++..
T Consensus 38 ~~~d~~~q~~~i~~l~~~~vdgiIi~~~~~~~~~~~l~~~~~~giPvV~~~~~~~~--~---~~~~~v~~~Dn~~~g~~a 112 (302)
T TIGR02637 38 TGTTAEGQIEVVNSLIAQKVDAIAISANDPDALVPALKKAMKRGIKVVTWDSGVAP--E---GRNLFLNQASADLIGRTQ 112 (302)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEeCCCCCC--C---ceeEEEecCCHHHHHHHH
Confidence 3446655566677777888877553 443333333334466789999986533211 1 12334433 333334444
Q ss_pred HHHH-HHc-CCeEEEEEEEcCCC--CcchHHHHHHHHhhcC---cEEEEEeecCCCCChhhHHHHHHHhhcCC--CeEEE
Q 008205 157 ADIV-DYF-GWRNVIALYVDDDH--GRNGIAALGDKLAEKR---CRLSHKVPLSPKGSRNQIIDTLLTVSSMM--SRILI 227 (574)
Q Consensus 157 ~~ll-~~~-~W~~v~ii~~~~~~--g~~~~~~l~~~~~~~g---~~v~~~~~~~~~~~~~~~~~~l~~ik~~~--~~vii 227 (574)
++.+ +++ +-.+++++..+... .....+.+++.+++.+ +++... .....+..+-...++++.+.. .+.|+
T Consensus 113 a~~l~~~l~~~~~I~~i~g~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~~~~~~~ai~ 190 (302)
T TIGR02637 113 VQLAAEQIGNGGEIAILSAASTATNQNAWIEIMKKELKDPKYPKVKLVAT--VYGDDDAQKSYQEAQGLLKSYPNLKGII 190 (302)
T ss_pred HHHHHHHcCCCcEEEEEECCCCCccHHHHHHHHHHHHhhccCCCCEEEee--ecCCchHHHHHHHHHHHHHhCCCccEEE
Confidence 4443 342 22689999754322 1223466666666543 333211 111122233334455543333 34443
Q ss_pred EEeChHHHHHHHHHHHHCCCC
Q 008205 228 LHTYDIWGLEVLNAAKHLRMM 248 (574)
Q Consensus 228 l~~~~~~~~~il~~a~~~gm~ 248 (574)
. .....+..+++.+++.|+.
T Consensus 191 ~-~~d~~a~ga~~al~~~g~~ 210 (302)
T TIGR02637 191 A-PTTVGIKAAAQAVSDAKLI 210 (302)
T ss_pred e-CCCchHHHHHHHHHhcCCC
Confidence 3 3456667778888888864
No 204
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=94.02 E-value=6 Score=38.01 Aligned_cols=204 Identities=11% Similarity=0.004 Sum_probs=101.3
Q ss_pred EEEEEeccCC-ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCCh-H-HH
Q 008205 34 NIGAVFALNS-TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFS-V-IA 110 (574)
Q Consensus 34 ~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s-~-~~ 110 (574)
+||++.|... .+-.....++..+.++ . |++ +.+.+...++..-.+....++.+++.+||=.... . ..
T Consensus 2 ~ig~i~~~~~~~~~~~~~~gi~~~a~~---~-----gy~--~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~~~~~~~ 71 (280)
T cd06315 2 NIIFVASDLKNGGILGVGEGVREAAKA---I-----GWN--LRILDGRGSEAGQAAALNQAIALKPDGIVLGGVDAAELQ 71 (280)
T ss_pred eEEEEecccCCcHHHHHHHHHHHHHHH---c-----CcE--EEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHH
Confidence 5888887532 1112233344333333 1 344 3444555565554555666777788776643222 2 22
Q ss_pred HHHHHhhccCCccEEecccCCCCcCCCCCC-ceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEcCC-CCcchHHHHH
Q 008205 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYP-FFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVDDD-HGRNGIAALG 186 (574)
Q Consensus 111 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~-~~~r~~ps~~~~~~ai~~ll~~~--~W~~v~ii~~~~~-~g~~~~~~l~ 186 (574)
..+ ..+...++|+|........ .....+ .+-.+.......+..+++.|... |-++++++..... ......+.++
T Consensus 72 ~~~-~~~~~~~iPvV~~d~~~~~-~~~~~~~~~~~v~~D~~~~~~~~~~~L~~~~~G~~~i~~i~~~~~~~~~~r~~~~~ 149 (280)
T cd06315 72 AEL-ELAQKAGIPVVGWHAGPEP-GPIEEPGIFYNVTTDPLAVAEVAALYAIANSGGKAGVVIFTDSRFSIAKAKANAMK 149 (280)
T ss_pred HHH-HHHHHCCCCEEEecCCCCC-CcccCCceeEEecCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCccHHHHHHHHH
Confidence 333 3345679999987542111 000011 13446666776777777766555 8899999864321 1111123444
Q ss_pred HHHhhc-CcEEEEEeecCCCCChhhHHHHHHHhhcC---CCeEEEEEeChHHHHHHHHHHHHCCCCCC
Q 008205 187 DKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSM---MSRILILHTYDIWGLEVLNAAKHLRMMES 250 (574)
Q Consensus 187 ~~~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~ik~~---~~~viil~~~~~~~~~il~~a~~~gm~~~ 250 (574)
..++.. +..+...................+++-+. ..+ .|++++...+..+++.+++.|+..+
T Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-ai~~~~D~~A~g~~~~l~~~g~~~p 216 (280)
T cd06315 150 EIIEACKGCTVLSIEDVPISRTATRMPALTARLLQRYGDKWT-HSLAINDLYFDYMAPPLASAGRKAD 216 (280)
T ss_pred HHHHhCCCCEEEEecccCcchhhhhhHHHHHHHHHhcCcccc-eecccchhhhHHhHHHHHHhcccCC
Confidence 444432 33331111111111111111333443222 234 4555666777888999999998654
No 205
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=93.90 E-value=0.72 Score=43.04 Aligned_cols=91 Identities=13% Similarity=0.087 Sum_probs=71.9
Q ss_pred HHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCC-------CChhhHHHHHHHhhcCCCeE
Q 008205 153 MAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPK-------GSRNQIIDTLLTVSSMMSRI 225 (574)
Q Consensus 153 ~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~-------~~~~~~~~~l~~ik~~~~~v 225 (574)
+.|+.+-++++|-+|++++. +|-...-+.+.+.+++.|++|.....+... .+...+.+.++++...+++.
T Consensus 108 ~~A~~~AL~alg~~RIalvT---PY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDA 184 (239)
T TIGR02990 108 SSAAVDGLAALGVRRISLLT---PYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADA 184 (239)
T ss_pred HHHHHHHHHHcCCCEEEEEC---CCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCE
Confidence 57888999999999999997 455667899999999999998776444331 24455666777776788999
Q ss_pred EEEEeChHHHHHHHHHHHH-CC
Q 008205 226 LILHTYDIWGLEVLNAAKH-LR 246 (574)
Q Consensus 226 iil~~~~~~~~~il~~a~~-~g 246 (574)
|++.|..-....++.++++ +|
T Consensus 185 ifisCTnLrt~~vi~~lE~~lG 206 (239)
T TIGR02990 185 LFLSCTALRAATCAQRIEQAIG 206 (239)
T ss_pred EEEeCCCchhHHHHHHHHHHHC
Confidence 9999999888899988865 44
No 206
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=93.35 E-value=9.3 Score=38.02 Aligned_cols=160 Identities=14% Similarity=0.015 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHhHhcCcEEEEcCCChHHHHHHHHhhccC-CccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH
Q 008205 82 SRFLGMVEALTLLENETVAIIGPQFSVIAHLVSHIANEF-QVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV 160 (574)
Q Consensus 82 ~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~va~~~~~~-~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll 160 (574)
+.....+...++.++|...|+|...... .++..++.++ ++.++-..+.... .++-..+.||..-.. .++-.++..+
T Consensus 82 ~~~~~~~~~~~~a~~g~~lI~~~gf~~~-d~~~~va~~~Pd~~F~iid~~~~~-~~Nv~s~~f~~~ega-yL~G~~AA~~ 158 (345)
T COG1744 82 SEADYERALRALAEDGYDLIFGTGFAFS-DALEKVAAEYPDVKFVIIDGVVKK-EDNVASYVFREYEGA-YLAGVAAAKM 158 (345)
T ss_pred chhHHHHHHHHHHhcCCCEEEEeccchh-hHHHHHHHHCCCCEEEEecCccCC-CCceEEEEeccccHH-HHHHHHHHHh
Confidence 3455556667788888888888655443 4455666555 4444432221111 112335677766432 2333344433
Q ss_pred HHcCCeEEEEEEEcC-CCCcchHHHHHHHHhhcCcEEEEEeecCCC-CChhhHHHHHHHhhcCCCeEEEEEeChHHHHHH
Q 008205 161 DYFGWRNVIALYVDD-DHGRNGIAALGDKLAEKRCRLSHKVPLSPK-GSRNQIIDTLLTVSSMMSRILILHTYDIWGLEV 238 (574)
Q Consensus 161 ~~~~W~~v~ii~~~~-~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~-~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~i 238 (574)
.+ =.+++.|..-+ +.-......|..-++..+-.+.....+... .+...-....+.+.+.+++||.-.+.+.... +
T Consensus 159 sk--~~~vG~vgg~~~p~v~~f~~gF~~Gak~~np~i~v~v~~~gsf~D~~k~k~~a~~li~~GaDVI~~~ag~~~~g-v 235 (345)
T COG1744 159 SK--SGKVGFVGGMDIPEVNRFINGFLAGAKSVNPDIKVKVVYVGSFSDPAKGKEAANALIDQGADVIYPAAGGTGVG-V 235 (345)
T ss_pred hc--CCceeEEecccchhhHHHHHHHHHHHHhhCCCccEEEEEecCccChHHHHHHHHHHHhcCCCEEEecCCCCcch-H
Confidence 32 34555555332 322334445555554443322222222111 2333345577788899999888876654433 3
Q ss_pred HHHHHHCCC
Q 008205 239 LNAAKHLRM 247 (574)
Q Consensus 239 l~~a~~~gm 247 (574)
+.+|++.|.
T Consensus 236 ~~~A~~~~~ 244 (345)
T COG1744 236 FQAAKELGA 244 (345)
T ss_pred HHHHHHhCC
Confidence 337777764
No 207
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=92.60 E-value=9.8 Score=36.31 Aligned_cols=156 Identities=12% Similarity=0.036 Sum_probs=87.1
Q ss_pred hHhcCcEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEE
Q 008205 93 LLENETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALY 172 (574)
Q Consensus 93 l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~ 172 (574)
+...++.++|-.........+.. +...++|+|........ ...+++ +.......+..+++.+...|-+++++|.
T Consensus 52 l~~~~vdgiIi~~~~~~~~~~~~-l~~~~iPvV~i~~~~~~--~~~~~~---V~~d~~~~~~~a~~~L~~~G~~~I~~i~ 125 (269)
T cd06287 52 LDALDIDGAILVEPMADDPQVAR-LRQRGIPVVSIGRPPGD--RTDVPY---VDLQSAATARMLLEHLRAQGARQIALIV 125 (269)
T ss_pred hhccCcCeEEEecCCCCCHHHHH-HHHcCCCEEEeCCCCCC--CCCCCe---EeeCcHHHHHHHHHHHHHcCCCcEEEEe
Confidence 33557777553211111122333 45669999987542210 112233 3345555566677777778999999997
Q ss_pred EcC--CCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCC
Q 008205 173 VDD--DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMM 248 (574)
Q Consensus 173 ~~~--~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~ 248 (574)
... .......+.+++.+++.|+..... ......+..+-...++++.+. .++ .|++++...+..+++.+++.|+.
T Consensus 126 ~~~~~~~~~~R~~gf~~a~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~-ai~~~~d~~A~gvl~al~~~gl~ 203 (269)
T cd06287 126 GSARRNSYLEAEAAYRAFAAEHGMPPVVL-RVDEAGGEEAGYAACAQLLAQHPDLD-ALCVPVDAFAVGAVRAATELGRA 203 (269)
T ss_pred CCcccccHHHHHHHHHHHHHHcCCCccee-EecCCCChHHHHHHHHHHHhCCCCCC-EEEEcCcHHHHHHHHHHHHcCCC
Confidence 432 233456678888888888653211 111112222333445554332 344 44455677888899999999987
Q ss_pred CCCeEEEE
Q 008205 249 ESGYVWIV 256 (574)
Q Consensus 249 ~~~~~~i~ 256 (574)
.++-+=|+
T Consensus 204 vP~dvsvi 211 (269)
T cd06287 204 VPDQLRVV 211 (269)
T ss_pred CCCceEEE
Confidence 66544443
No 208
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=92.15 E-value=13 Score=36.65 Aligned_cols=149 Identities=10% Similarity=-0.012 Sum_probs=81.8
Q ss_pred cCcEEEEc-CCChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEc
Q 008205 96 NETVAIIG-PQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVD 174 (574)
Q Consensus 96 ~~v~aiiG-p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~ 174 (574)
.++.++|- |..+. .....+...++|+|......+ ...++ .+.......+..+++.+...|.++++++...
T Consensus 113 ~~vDgiI~~~~~~~---~~~~~l~~~~~pvV~~~~~~~---~~~~~---~V~~D~~~~~~~a~~~l~~~G~~~i~~i~~~ 183 (327)
T PRK10339 113 KNVTGILIVGKPTP---ALRAAASALTDNICFIDFHEP---GSGYD---AVDIDLARISKEIIDFYINQGVNRIGFIGGE 183 (327)
T ss_pred ccCCEEEEeCCCCH---HHHHHHHhcCCCEEEEeCCCC---CCCCC---EEEECHHHHHHHHHHHHHHCCCCeEEEeCCc
Confidence 46666554 22222 223444567899997643211 11223 2555666666777787777899999999643
Q ss_pred CC--CCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCC
Q 008205 175 DD--HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMES 250 (574)
Q Consensus 175 ~~--~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~ 250 (574)
.. ........+.+.++..|+. .....+....+..+....++++.+. .++ .|++++...+..+++++++.|+..+
T Consensus 184 ~~~~~~~~R~~gf~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-ai~~~~D~~A~g~~~al~~~g~~vP 261 (327)
T PRK10339 184 DEPGKADIREVAFAEYGRLKQVV-REEDIWRGGFSSSSGYELAKQMLAREDYPK-ALFVASDSIAIGVLRAIHERGLNIP 261 (327)
T ss_pred cccchhhHHHHHHHHHHHHcCCC-ChhheeecCcChhHHHHHHHHHHhCCCCCC-EEEECCcHHHHHHHHHHHHcCCCCC
Confidence 32 2334566777777777751 1100111111222223344444332 244 4445566778889999999998655
Q ss_pred CeEEE
Q 008205 251 GYVWI 255 (574)
Q Consensus 251 ~~~~i 255 (574)
+-+-|
T Consensus 262 ~di~v 266 (327)
T PRK10339 262 QDISL 266 (327)
T ss_pred CceEE
Confidence 43333
No 209
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=90.62 E-value=3.3 Score=41.39 Aligned_cols=92 Identities=8% Similarity=-0.000 Sum_probs=72.1
Q ss_pred HHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe--
Q 008205 153 MAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT-- 230 (574)
Q Consensus 153 ~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~-- 230 (574)
...+.+.++.+|++++.||++..-.....++.+.+.++..|+.+.....+.+++..+....-++.+++.+++.||-.+
T Consensus 17 l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGGG 96 (377)
T COG1454 17 LKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGGG 96 (377)
T ss_pred HHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 366778889999999999997765566688999999999998777666677777778888889999999999999874
Q ss_pred ChHHHHHHHHHHHH
Q 008205 231 YDIWGLEVLNAAKH 244 (574)
Q Consensus 231 ~~~~~~~il~~a~~ 244 (574)
++-++...+.-...
T Consensus 97 S~~D~AK~i~~~~~ 110 (377)
T COG1454 97 SVIDAAKAIALLAE 110 (377)
T ss_pred cHHHHHHHHHHHhh
Confidence 44555554444333
No 210
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t
Probab=89.67 E-value=18 Score=33.97 Aligned_cols=145 Identities=6% Similarity=-0.062 Sum_probs=82.7
Q ss_pred HHhHhcCcEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHH--cCCeEE
Q 008205 91 LTLLENETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDY--FGWRNV 168 (574)
Q Consensus 91 ~~l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~--~~W~~v 168 (574)
.+.++.++.++|=-............+...++|++......+. ...+++ +...+..-+..+++.+.. .|-+++
T Consensus 46 ~~~~~~~vdGvIi~~~~~~~~~~~~~~~~~~~PvV~i~~~~~~--~~~~~~---V~~D~~~~~~~a~~~L~~~~~G~~~I 120 (247)
T cd06276 46 ISNTKGKYSGYVVMPHFKNEIQYFLLKKIPKEKLLILDHSIPE--GGEYSS---VAQDFEKAIYNALQEGLEKLKKYKKL 120 (247)
T ss_pred HHHHhcCCCEEEEecCCCCcHHHHHHhccCCCCEEEEcCcCCC--CCCCCe---EEEccHHHHHHHHHHHHHHhcCCCEE
Confidence 3444556666552111111111334555578999986532211 112232 444566666677777666 799999
Q ss_pred EEEEEcC-CCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCC
Q 008205 169 IALYVDD-DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRM 247 (574)
Q Consensus 169 ~ii~~~~-~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm 247 (574)
++|.... ..+....+.+++.+++.|+.... .. .... . .+ .+.+ .|++.+...+..+++.+++.|+
T Consensus 121 a~i~~~~~~~~~~R~~gf~~~l~~~g~~~~~---~~-~~~~----~---~~--~~~~-ai~~~~d~~A~g~~~~l~~~g~ 186 (247)
T cd06276 121 ILVFPNKTAIPKEIKRGFERFCKDYNIETEI---IN-DYEN----R---EI--EKGD-LYIILSDTDLVFLIKKARESGL 186 (247)
T ss_pred EEEecCccHhHHHHHHHHHHHHHHcCCCccc---cc-ccch----h---hc--cCCc-EEEEeCHHHHHHHHHHHHHcCC
Confidence 9997543 23456678888899988875421 11 0010 0 01 1224 4556677888889999999998
Q ss_pred CCCCeEE
Q 008205 248 MESGYVW 254 (574)
Q Consensus 248 ~~~~~~~ 254 (574)
..++-+=
T Consensus 187 ~iP~dis 193 (247)
T cd06276 187 LLGKDIG 193 (247)
T ss_pred cCCceeE
Confidence 6654433
No 211
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=88.96 E-value=2.2 Score=40.59 Aligned_cols=86 Identities=19% Similarity=0.099 Sum_probs=64.5
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHLV 113 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 113 (574)
+||.+-+.....-.....+|...++..| |+.++...+..+-.|+..+.+.+..++++|+.+|++.... ..+
T Consensus 122 kVG~I~g~~~~~~~~~~~gF~~G~~~~~------p~~~v~~~~~g~~~D~~~a~~~a~~l~~~G~DvI~~~~~~---~g~ 192 (258)
T cd06353 122 KVGYVAAFPIPEVVRGINAFALGARSVN------PDATVKVIWTGSWFDPAKEKEAALALIDQGADVIYQHTDS---PGV 192 (258)
T ss_pred cEEEEcCcccHHHHHHHHHHHHHHHHHC------CCcEEEEEEecCCCCcHHHHHHHHHHHHCCCcEEEecCCC---hHH
Confidence 6898887764433456789999998887 4566666666666789999999999999999988876522 345
Q ss_pred HHhhccCCccEEecc
Q 008205 114 SHIANEFQVPLLSFA 128 (574)
Q Consensus 114 a~~~~~~~iP~Is~~ 128 (574)
...+.+.++..|.+.
T Consensus 193 ~~aa~~~g~~~IG~d 207 (258)
T cd06353 193 IQAAEEKGVYAIGYV 207 (258)
T ss_pred HHHHHHhCCEEEeec
Confidence 566777899999764
No 212
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=88.64 E-value=4.4 Score=41.08 Aligned_cols=87 Identities=7% Similarity=-0.023 Sum_probs=63.6
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe--C
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT--Y 231 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~--~ 231 (574)
..+.+.++.+|.+++.++++..-......+.+.+.+++.|+.+.....+.++++.++..+..+..++.+++.||-.+ +
T Consensus 20 ~~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGGGS 99 (383)
T PRK09860 20 TDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGS 99 (383)
T ss_pred HHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCch
Confidence 55677889999999999986533333467889999999998765444455556778888889999999999998764 4
Q ss_pred hHHHHHHHH
Q 008205 232 DIWGLEVLN 240 (574)
Q Consensus 232 ~~~~~~il~ 240 (574)
.-++...+.
T Consensus 100 ~iD~AK~ia 108 (383)
T PRK09860 100 PHDCAKGIA 108 (383)
T ss_pred HHHHHHHHH
Confidence 444444443
No 213
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=88.43 E-value=2.1 Score=36.98 Aligned_cols=98 Identities=15% Similarity=0.178 Sum_probs=60.5
Q ss_pred HHHHHHcCCeEEEEEEEcCC--CCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHH-HHhhcCCCeEEEEEeChH
Q 008205 157 ADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTL-LTVSSMMSRILILHTYDI 233 (574)
Q Consensus 157 ~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l-~~ik~~~~~viil~~~~~ 233 (574)
++.+...|.+++++|..... +.....+.+++.+++.|+.......... ....+..... ..+++..++.| ++++..
T Consensus 1 ~~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~pdai-i~~~~~ 78 (160)
T PF13377_consen 1 VDYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSD-DDSEDAREAQLLWLRRLRPDAI-ICSNDR 78 (160)
T ss_dssp HHHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEES-SSHHHHHHHHHHHHHTCSSSEE-EESSHH
T ss_pred ChHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecC-CcchhHHHHHHHHHhcCCCcEE-EEcCHH
Confidence 35677789999999993332 3345667888999999987554433321 2222222222 23433355544 447888
Q ss_pred HHHHHHHHHHHCCCCCCCeEEEE
Q 008205 234 WGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 234 ~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
.+..++..+.+.|+..++-+-|+
T Consensus 79 ~a~~~~~~l~~~g~~vP~di~vv 101 (160)
T PF13377_consen 79 LALGVLRALRELGIRVPQDISVV 101 (160)
T ss_dssp HHHHHHHHHHHTTSCTTTTSEEE
T ss_pred HHHHHHHHHHHcCCcccccccEE
Confidence 89999999999999655444443
No 214
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.23 E-value=19 Score=32.30 Aligned_cols=88 Identities=8% Similarity=0.025 Sum_probs=63.1
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCC-------CChhhHHHHHHHhhcCCCeEE
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPK-------GSRNQIIDTLLTVSSMMSRIL 226 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~-------~~~~~~~~~l~~ik~~~~~vi 226 (574)
.|+++=|+.++-+++.++.. |-...-+...+.++.+|+.|.....+... ......-++-+++..-+++.|
T Consensus 107 ~Avv~aL~al~a~ri~vlTP---Y~~evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~~~~~Dai 183 (238)
T COG3473 107 TAVVEALNALGAQRISVLTP---YIDEVNQREIEFLEANGFEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVFTPDADAI 183 (238)
T ss_pred HHHHHHHHhhCcceEEEecc---chhhhhhHHHHHHHhCCeEEEEeeccCCcccchhcccChHHHHHHHHHhcCCCCCeE
Confidence 57788899999999999973 44456788889999999998766544321 122234455667777789999
Q ss_pred EEEeChHHHHHHHHHHHH
Q 008205 227 ILHTYDIWGLEVLNAAKH 244 (574)
Q Consensus 227 il~~~~~~~~~il~~a~~ 244 (574)
++.|..-....++....+
T Consensus 184 FiSCTnlRt~eii~~lE~ 201 (238)
T COG3473 184 FISCTNLRTFEIIEKLER 201 (238)
T ss_pred EEEeeccccHHHHHHHHH
Confidence 998877666666666554
No 215
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=87.58 E-value=13 Score=32.88 Aligned_cols=99 Identities=8% Similarity=-0.041 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhc--CcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEE
Q 008205 151 YQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEK--RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILIL 228 (574)
Q Consensus 151 ~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~--g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil 228 (574)
++...+.+.+...+| ++.++..+.+ .++.+.+.+++. |+.|+....-+ .+..+...+++.|+++++++|++
T Consensus 35 dl~~~l~~~~~~~~~-~ifllG~~~~----~~~~~~~~l~~~yP~l~ivg~~~g~--f~~~~~~~i~~~I~~~~pdiv~v 107 (172)
T PF03808_consen 35 DLFPDLLRRAEQRGK-RIFLLGGSEE----VLEKAAANLRRRYPGLRIVGYHHGY--FDEEEEEAIINRINASGPDIVFV 107 (172)
T ss_pred HHHHHHHHHHHHcCC-eEEEEeCCHH----HHHHHHHHHHHHCCCeEEEEecCCC--CChhhHHHHHHHHHHcCCCEEEE
Confidence 345666666666665 7777875554 456666666655 56666543222 35667888999999999999999
Q ss_pred EeChHHHHHHHHHHHHCCCCCCCeEEEEeCc
Q 008205 229 HTYDIWGLEVLNAAKHLRMMESGYVWIVTDW 259 (574)
Q Consensus 229 ~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~ 259 (574)
......-..++.+..+.. ... +|+..+.
T Consensus 108 glG~PkQE~~~~~~~~~l--~~~-v~i~vG~ 135 (172)
T PF03808_consen 108 GLGAPKQERWIARHRQRL--PAG-VIIGVGG 135 (172)
T ss_pred ECCCCHHHHHHHHHHHHC--CCC-EEEEECc
Confidence 866555555555544432 122 6777654
No 216
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=87.29 E-value=3.2 Score=42.22 Aligned_cols=79 Identities=10% Similarity=-0.029 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD 232 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~ 232 (574)
..+.++++.+|.+++.++++..-......+.+.+.|++.|+.+.....+.+++..+...+.++..++.+++.||-.+..
T Consensus 38 ~~l~~~~~~~g~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGGG 116 (395)
T PRK15454 38 SSCGQQAQTRGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGGG 116 (395)
T ss_pred HHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCCh
Confidence 5567788899999888887544333446788999999999876654445555666778888899999999999887543
No 217
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=86.78 E-value=3.5 Score=42.27 Aligned_cols=86 Identities=9% Similarity=-0.043 Sum_probs=62.5
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC--
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-- 231 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-- 231 (574)
..+.++++.++.+++.+|++..-......+.+.+.+++.|+.+.....+..+++.+.....++..++.+.+.||-.+.
T Consensus 12 ~~l~~~l~~~g~~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS 91 (414)
T cd08190 12 AEVGMDLKNLGARRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGGGS 91 (414)
T ss_pred HHHHHHHHHcCCCeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 456678889999999999866544444578899999988887654434455566777888888899999999888753
Q ss_pred hHHHHHHH
Q 008205 232 DIWGLEVL 239 (574)
Q Consensus 232 ~~~~~~il 239 (574)
.-++...+
T Consensus 92 viD~AKai 99 (414)
T cd08190 92 VIDTAKAA 99 (414)
T ss_pred HHHHHHHH
Confidence 34444333
No 218
>TIGR00035 asp_race aspartate racemase.
Probab=86.31 E-value=7.3 Score=36.26 Aligned_cols=85 Identities=14% Similarity=0.120 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhH-hcCcEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHH
Q 008205 83 RFLGMVEALTLL-ENETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVD 161 (574)
Q Consensus 83 ~~~a~~~~~~l~-~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~ 161 (574)
+...+..+.+.+ +.|+.+|+=|-.+.... +..+-...++|+|+. ..+.++-++
T Consensus 60 ~~~~l~~~~~~L~~~g~d~iviaCNTah~~-~~~l~~~~~iPii~i-------------------------~~~~~~~~~ 113 (229)
T TIGR00035 60 PRPILIDIAVKLENAGADFIIMPCNTAHKF-AEDIQKAIGIPLISM-------------------------IEETAEAVK 113 (229)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCccHHHH-HHHHHHhCCCCEech-------------------------HHHHHHHHH
Confidence 444444444444 44888877655444332 445555668888863 123333335
Q ss_pred HcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEE
Q 008205 162 YFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRL 196 (574)
Q Consensus 162 ~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v 196 (574)
..+.++|+++.....- ....+++.+++.|+.+
T Consensus 114 ~~~~~~VgvLaT~~T~---~s~~y~~~l~~~g~~v 145 (229)
T TIGR00035 114 EDGVKKAGLLGTKGTM---KDGVYEREMKKHGIEI 145 (229)
T ss_pred HcCCCEEEEEecHHHH---HhHHHHHHHHHCCCEE
Confidence 4577788888644321 2234666677777654
No 219
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=86.26 E-value=4 Score=41.20 Aligned_cols=88 Identities=7% Similarity=-0.063 Sum_probs=63.0
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe--C
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT--Y 231 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~--~ 231 (574)
..+.++++.++.+++.+|++.........+.+.+.+++.|+.+.....+..+++.+...+.++..+..+.+.||-.+ +
T Consensus 13 ~~l~~~l~~~g~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGS 92 (370)
T cd08192 13 KELPAECAELGIKRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGGGS 92 (370)
T ss_pred HHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCch
Confidence 45677888899999999986554333357889999998888765443455556677788888889889999988764 4
Q ss_pred hHHHHHHHHH
Q 008205 232 DIWGLEVLNA 241 (574)
Q Consensus 232 ~~~~~~il~~ 241 (574)
.-++..++..
T Consensus 93 viD~aK~ia~ 102 (370)
T cd08192 93 ALDLAKAVAL 102 (370)
T ss_pred HHHHHHHHHH
Confidence 4455544433
No 220
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=86.02 E-value=33 Score=32.92 Aligned_cols=91 Identities=11% Similarity=0.076 Sum_probs=60.7
Q ss_pred CCCCCeEEEEEEeccCCc-cchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEE-EEcC
Q 008205 27 STIPPVLNIGAVFALNST-IGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVA-IIGP 104 (574)
Q Consensus 27 ~~~~~~i~IG~l~~~~~~-~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~a-iiGp 104 (574)
++..++..||+..|.-.. .-..-..+|.-+.+.+ |.+ +.+.+-+.+...-...+..++++|+.+ ||+|
T Consensus 20 aa~~~d~~IGis~~d~~~eRW~~D~~~~~~~~e~~--------g~k--~~~q~A~~~~~~Q~~qien~i~qg~~vlvi~a 89 (341)
T COG4213 20 AAAAKDGVIGISMPDLRSERWIKDRDAFVKKAEAL--------GAK--VDVQSADGDEEKQLAQIENMINQGVKVLVIGA 89 (341)
T ss_pred hhhccCCeEEEEcCChhHhhhhhhhHHHHHHHHhc--------cch--hhhhhhccChhHHHHHHHHHHhcCCCEEEEEe
Confidence 456677899999887521 0011233343333332 343 344444556666667888999997665 6789
Q ss_pred CChHHHHHHHHhhccCCccEEec
Q 008205 105 QFSVIAHLVSHIANEFQVPLLSF 127 (574)
Q Consensus 105 ~~s~~~~~va~~~~~~~iP~Is~ 127 (574)
..+.....+-..+...+||+|+|
T Consensus 90 ~d~~~l~~~i~~A~~~gikViaY 112 (341)
T COG4213 90 IDGGVLSNAVEKAKSEGIKVIAY 112 (341)
T ss_pred ccchhHHHHHHHHHHcCCeEEEe
Confidence 99988888888899999999998
No 221
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=85.71 E-value=4.5 Score=41.02 Aligned_cols=86 Identities=12% Similarity=0.030 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC--
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-- 231 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-- 231 (574)
..+.+.++.+|.+++.++++..-.-....+.+.+.+++.|+.+.....+..+++.++....++.+++.+.+.||-.+.
T Consensus 19 ~~l~~~~~~~g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS 98 (382)
T PRK10624 19 GALTDEVKRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGGGS 98 (382)
T ss_pred HHHHHHHHhcCCCEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChH
Confidence 557788888999999999865433334678899999988887654434444456677888888888889998887643
Q ss_pred hHHHHHHH
Q 008205 232 DIWGLEVL 239 (574)
Q Consensus 232 ~~~~~~il 239 (574)
.-++...+
T Consensus 99 ~iD~aK~i 106 (382)
T PRK10624 99 PQDTCKAI 106 (382)
T ss_pred HHHHHHHH
Confidence 34444433
No 222
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=85.23 E-value=4.8 Score=40.76 Aligned_cols=87 Identities=8% Similarity=-0.011 Sum_probs=62.2
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC--
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-- 231 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-- 231 (574)
.-+.++++.++.+++.++++..-......+.+.+.+++.|+.+.....+..+++.+.+...++.+++.+.+.||-.+.
T Consensus 15 ~~l~~~l~~~~~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGs 94 (376)
T cd08193 15 ARLGELLAALGAKRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGGGS 94 (376)
T ss_pred HHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCch
Confidence 456677888899999999865433334578899999988887654444555566777888899999889998888753
Q ss_pred hHHHHHHHH
Q 008205 232 DIWGLEVLN 240 (574)
Q Consensus 232 ~~~~~~il~ 240 (574)
.-++..++.
T Consensus 95 ~iD~aK~ia 103 (376)
T cd08193 95 SMDVAKLVA 103 (376)
T ss_pred HHHHHHHHH
Confidence 344444443
No 223
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=85.13 E-value=7.7 Score=37.47 Aligned_cols=94 Identities=9% Similarity=-0.020 Sum_probs=73.5
Q ss_pred CCCceEEecCChHHHHHHHH----HHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHH
Q 008205 138 QYPFFVRTTQSDLYQMAAIA----DIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIID 213 (574)
Q Consensus 138 ~~~~~~r~~ps~~~~~~ai~----~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~ 213 (574)
..++-|-+.||..-.+..+. +-++..|.+++.++++.+-.-....+..++.|++.|+.+..-....++++..++..
T Consensus 39 ~~~~af~m~~s~~rfG~gv~~Evg~dikn~gaKk~llvTDkni~~~~~~~~a~~~L~~~~I~~~vyD~v~~ePtv~s~~~ 118 (465)
T KOG3857|consen 39 MMSVAFFMIPSTSRFGKGVLAEVGDDIKNLGAKKTLLVTDKNIAKLGLVKVAQDSLEENGINVEVYDKVQPEPTVGSVTA 118 (465)
T ss_pred cceeeEEeccchhhhcchhHHHHHHHHHhcCccceEEeeCCChhhcccHHHHHHHHHHcCCceEEecCccCCCchhhHHH
Confidence 45677778887766655543 45788999999999977765556778889999999999887666666677888999
Q ss_pred HHHHhhcCCCeEEEEEeC
Q 008205 214 TLLTVSSMMSRILILHTY 231 (574)
Q Consensus 214 ~l~~ik~~~~~viil~~~ 231 (574)
.++-.|..+.+.+|..+.
T Consensus 119 alefak~~~fDs~vaiGG 136 (465)
T KOG3857|consen 119 ALEFAKKKNFDSFVAIGG 136 (465)
T ss_pred HHHHHHhcccceEEEEcC
Confidence 999999888888877654
No 224
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=84.86 E-value=16 Score=36.96 Aligned_cols=88 Identities=9% Similarity=0.007 Sum_probs=62.8
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe--C
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT--Y 231 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~--~ 231 (574)
..+.+.++.++-+++.++++.........+.+.+.+++.|+.+.....+..+.+.+...+.++.+++.+++.||-.+ +
T Consensus 15 ~~l~~~l~~~g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGS 94 (374)
T cd08189 15 AQLPAAISQLGVKKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGGGS 94 (374)
T ss_pred HHHHHHHHhcCCCeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 45677788888899999986543333457889999998888765444455556677788888899989999988764 4
Q ss_pred hHHHHHHHHH
Q 008205 232 DIWGLEVLNA 241 (574)
Q Consensus 232 ~~~~~~il~~ 241 (574)
.-++..++..
T Consensus 95 ~~D~aK~ia~ 104 (374)
T cd08189 95 VIDCAKAIAA 104 (374)
T ss_pred HHHHHHHHHH
Confidence 4455544433
No 225
>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein. A subset of this model in which nearly all members exhibit genomic context with elements of phosphonate metabolism, particularly the C-P lyase system has been built (TIGR03431) as an equivalog. Nevertheless, there are members of this subfamily (TIGR01098) which show up sporadically on a phylogenetic tree that also show phosphonate context and are most likely competent to transport phosphonates.
Probab=84.44 E-value=0.78 Score=43.49 Aligned_cols=58 Identities=7% Similarity=-0.037 Sum_probs=44.0
Q ss_pred CceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhcccccc
Q 008205 470 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKR 545 (574)
Q Consensus 470 ~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~ 545 (574)
.+++|++... +. +..+.++..++.+++++.+|.+ .+++... +|+.++..+..|++|++
T Consensus 32 ~~l~vg~~~~--~~--------~~~~~~~~~~l~~~l~~~~g~~--v~~~~~~------~~~~~~~~l~~g~~Di~ 89 (254)
T TIGR01098 32 KELNFGILPG--EN--------ASNLTRRWEPLADYLEKKLGIK--VQLFVAT------DYSAVIEAMRFGRVDIA 89 (254)
T ss_pred CceEEEECCC--CC--------HHHHHHHHHHHHHHHHHHhCCc--EEEEeCC------CHHHHHHHHHcCCccEE
Confidence 4578877431 21 2234556689999999999988 7776542 79999999999999999
No 226
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=84.38 E-value=6.1 Score=39.91 Aligned_cols=87 Identities=8% Similarity=-0.011 Sum_probs=62.4
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC--
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-- 231 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-- 231 (574)
..+.++++.++.+++.+|++.........+.+.+.+++.|+.+.....+..+.+.+++.+.++.++..+.+.||-.+.
T Consensus 12 ~~l~~~l~~~~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs 91 (370)
T cd08551 12 EKLGEEIKNLGGRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGGGS 91 (370)
T ss_pred HHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCch
Confidence 566777888899999999865543335667899999988887654434554567778888899998889998887643
Q ss_pred hHHHHHHHH
Q 008205 232 DIWGLEVLN 240 (574)
Q Consensus 232 ~~~~~~il~ 240 (574)
.-++..++.
T Consensus 92 ~~D~AK~va 100 (370)
T cd08551 92 VLDTAKAIA 100 (370)
T ss_pred HHHHHHHHH
Confidence 344444443
No 227
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=83.67 E-value=6.5 Score=39.75 Aligned_cols=86 Identities=7% Similarity=-0.021 Sum_probs=61.9
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC--
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-- 231 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-- 231 (574)
..+.++++.++.+++.+|++...+.....+.+.+.+++.|+.+.....+..+++.+...+.++.++..+.+.||-.+.
T Consensus 12 ~~l~~~~~~~~~~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS 91 (375)
T cd08194 12 DETGAVLADLGGKRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGGGS 91 (375)
T ss_pred HHHHHHHHHcCCCeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCch
Confidence 455667777888999999965544334678899999998987765444555567777888889999899998887643
Q ss_pred hHHHHHHH
Q 008205 232 DIWGLEVL 239 (574)
Q Consensus 232 ~~~~~~il 239 (574)
.-++...+
T Consensus 92 ~~D~AKai 99 (375)
T cd08194 92 PIDTAKAI 99 (375)
T ss_pred HHHHHHHH
Confidence 34444443
No 228
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=83.23 E-value=48 Score=32.40 Aligned_cols=200 Identities=10% Similarity=0.021 Sum_probs=98.0
Q ss_pred EEEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-CHHHHHHHHHHhHhcCcEEEEcCCChH
Q 008205 33 LNIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNY-SRFLGMVEALTLLENETVAIIGPQFSV 108 (574)
Q Consensus 33 i~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~-~~~~a~~~~~~l~~~~v~aiiGp~~s~ 108 (574)
.++++++|-. ..+......+++.+.++ . ++. ++...+... ++....+.+.++.++|...||++....
T Consensus 2 ~~v~~~~~g~~~D~g~n~~~~~G~~~~~~~----~---~~i--~~~~~e~~~~~~~~~~~~~~~~~~~g~dlIi~~g~~~ 72 (306)
T PF02608_consen 2 KKVALLDPGGINDKGFNQSAYEGLKRAEKE----L---DGI--EIIYVENVPETDADYEEAIRQLADQGYDLIIGHGFEY 72 (306)
T ss_dssp EEEEEESSS-CCCSSHHHHHHHHHHHHHHH----C---TTE--EEEEEES-S-TCHHHHHHHHHHHHTT-SEEEEESGGG
T ss_pred eEEEEEECCCCCCccHHHHHHHHHHHHHHH----c---CCc--eEEEEecCCccHHHHHHHHHHHHHcCCCEEEEccHHH
Confidence 3567776654 12223344444444444 2 233 444444443 344555666777788999999855443
Q ss_pred HHHHHHHhhccC-CccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEE---EcC-CCCcchHH
Q 008205 109 IAHLVSHIANEF-QVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALY---VDD-DHGRNGIA 183 (574)
Q Consensus 109 ~~~~va~~~~~~-~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~---~~~-~~g~~~~~ 183 (574)
..++..++..+ ++-++...+.......+-..+.||..- ...++-.++.++..- .+++++. ..+ +.-.....
T Consensus 73 -~~~~~~vA~~yPd~~F~~~d~~~~~~~~Nv~~~~f~~~e-~~fLaG~~Aa~~tkt--~~vg~ig~i~G~~~p~~~~~~~ 148 (306)
T PF02608_consen 73 -SDALQEVAKEYPDTKFIIIDGYIDAPEPNVISITFREEE-ASFLAGYLAALMTKT--GKVGFIGDIGGMDIPPVNRFIN 148 (306)
T ss_dssp -HHHHHHHHTC-TTSEEEEESS---ST-TTEEEEEE-HHH-HHHHHHHHHHHHHSS--TEEEEEEEEES--SCTTHHHHH
T ss_pred -HHHHHHHHHHCCCCEEEEEecCcCCCCCcEEEEEccccc-hhHHHHHHHHHHhcc--CcccccccccCCCcHhHHHHHH
Confidence 34666777766 555555433222110122234444432 233444455555443 4788887 333 33334455
Q ss_pred HHHHHHhhcC--cEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCC
Q 008205 184 ALGDKLAEKR--CRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRM 247 (574)
Q Consensus 184 ~l~~~~~~~g--~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm 247 (574)
.|..-++..+ +++.... ...-.+...-...-+.+.+.++++|.-.+.. ....++.+|++.|.
T Consensus 149 gF~~Ga~~~np~i~v~~~~-~gs~~D~~~~~~~a~~li~~GaDvI~~~ag~-~~~gv~~aa~e~g~ 212 (306)
T PF02608_consen 149 GFIAGAKYVNPDIKVNVSY-TGSFNDPAKAKEAAEALIDQGADVIFPVAGG-SGQGVIQAAKEAGV 212 (306)
T ss_dssp HHHHHHHHTTTT-EEEEEE--SSSS-HHHHHHHHHHHHHTT-SEEEEE-CC-CHHHHHHHHHHHTH
T ss_pred HHHHHHHHhCcCceEEEEE-cCCcCchHHHHHHHHHHhhcCCeEEEECCCC-CchHHHHHHHHcCC
Confidence 6666665443 3443322 2111233334555566667999988886553 34557888888764
No 229
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=83.03 E-value=45 Score=32.01 Aligned_cols=162 Identities=19% Similarity=0.193 Sum_probs=93.9
Q ss_pred eEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHH
Q 008205 32 VLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAH 111 (574)
Q Consensus 32 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~ 111 (574)
.=.||.||..++. +.+.+|..|+.++- |..+-+.-.+.+-.-.+.++-.-+.+++-+.+|.-=..+. .
T Consensus 44 gk~laliFeK~ST---RTR~SFeva~~qlG-------g~~~~l~~~~~Qlgr~Esi~DTArVLsr~~D~I~~R~~~~--~ 111 (310)
T COG0078 44 GKNLALIFEKTST---RTRVSFEVAATQLG-------GHAIYLGPGDSQLGRGESIKDTARVLSRMVDAIMIRGFSH--E 111 (310)
T ss_pred CceEEEEecCCCc---hhhhhHHHHHHHcC-------CCeEEeCCCccccCCCCcHHHHHHHHHhhhheEEEecccH--H
Confidence 3469999998763 67889999998863 3333333333332222233333455566566655433333 3
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcC---CeEEEEEEEcCCCCcchHHHH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG---WRNVIALYVDDDHGRNGIAAL 185 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~---W~~v~ii~~~~~~g~~~~~~l 185 (574)
.+..++....||+|.- |+|...|. ++++|++ +++| -.+++++.+. .+....+
T Consensus 112 ~ve~lA~~s~VPViNg------LtD~~HP~------------Q~LADl~Ti~E~~g~l~g~k~a~vGDg----NNv~nSl 169 (310)
T COG0078 112 TLEELAKYSGVPVING------LTDEFHPC------------QALADLMTIKEHFGSLKGLKLAYVGDG----NNVANSL 169 (310)
T ss_pred HHHHHHHhCCCceEcc------cccccCcH------------HHHHHHHHHHHhcCcccCcEEEEEcCc----chHHHHH
Confidence 6788899999999962 44432222 5677763 5665 3566666532 4577888
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHh-hcCCCeEEEE
Q 008205 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTV-SSMMSRILIL 228 (574)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i-k~~~~~viil 228 (574)
.......|+.+.....-.. ....++....+++ ++++..+.+.
T Consensus 170 ~~~~a~~G~dv~ia~Pk~~-~p~~~~~~~a~~~a~~~g~~i~~t 212 (310)
T COG0078 170 LLAAAKLGMDVRIATPKGY-EPDPEVVEKAKENAKESGGKITLT 212 (310)
T ss_pred HHHHHHhCCeEEEECCCcC-CcCHHHHHHHHHHHHhcCCeEEEe
Confidence 8888888988765432111 1234455555553 4455554443
No 230
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=82.62 E-value=6.9 Score=39.63 Aligned_cols=86 Identities=14% Similarity=0.045 Sum_probs=60.6
Q ss_pred HHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC-
Q 008205 153 MAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY- 231 (574)
Q Consensus 153 ~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~- 231 (574)
...+.+.++.+|.+++.+|++..-.-....+.+.+.+++.|+.+.....+.++++.+...+..+.+++.+.+.||-.+.
T Consensus 17 l~~l~~~l~~~g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGG 96 (379)
T TIGR02638 17 IEDIVDEVKRRGFKKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGGG 96 (379)
T ss_pred HHHHHHHHHhcCCCEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCh
Confidence 3556678888999999999865433333678899999988887654433444456677888888888899999887644
Q ss_pred -hHHHHHH
Q 008205 232 -DIWGLEV 238 (574)
Q Consensus 232 -~~~~~~i 238 (574)
.-++...
T Consensus 97 SviD~aKa 104 (379)
T TIGR02638 97 SPIDTAKA 104 (379)
T ss_pred HHHHHHHH
Confidence 3444433
No 231
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=80.77 E-value=4.9 Score=40.54 Aligned_cols=89 Identities=8% Similarity=0.028 Sum_probs=64.9
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh-
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD- 232 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~- 232 (574)
..+.+.++.+| ++.+|++..-......+.+.+.+++.|+.+.....+..+.+..+..+.++.+++.+++.||-.+..
T Consensus 12 ~~l~~~l~~~g--r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS 89 (366)
T PF00465_consen 12 EELGEELKRLG--RVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGGGS 89 (366)
T ss_dssp GGHHHHHHCTT--EEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEESHH
T ss_pred HHHHHHHHhcC--CEEEEECchHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 45677788887 999999663222336789999999999988666656666778889999999999999999887654
Q ss_pred -HHHHHHHHHHHH
Q 008205 233 -IWGLEVLNAAKH 244 (574)
Q Consensus 233 -~~~~~il~~a~~ 244 (574)
-++..++.....
T Consensus 90 ~~D~aK~va~~~~ 102 (366)
T PF00465_consen 90 VMDAAKAVALLLA 102 (366)
T ss_dssp HHHHHHHHHHHHT
T ss_pred cCcHHHHHHhhcc
Confidence 444455544443
No 232
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=80.20 E-value=9.5 Score=35.89 Aligned_cols=98 Identities=9% Similarity=0.145 Sum_probs=56.6
Q ss_pred HHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHH
Q 008205 155 AIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIW 234 (574)
Q Consensus 155 ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~ 234 (574)
-+-++++.++.+++.+|++.+.+ ....+.+.+.+++.|+.+..........+..+...+...++..+.+.||-.+.. .
T Consensus 9 ~l~~~l~~~~~~~~lvv~d~~t~-~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGgG-~ 86 (250)
T PF13685_consen 9 KLPEILSELGLKKVLVVTDENTY-KAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGGG-T 86 (250)
T ss_dssp GHHHHHGGGT-SEEEEEEETTHH-HHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEESH-H
T ss_pred HHHHHHHhcCCCcEEEEEcCCHH-HHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCCc-H
Confidence 35677888889999999977643 334578899999999888743322222455556666677766788877776654 4
Q ss_pred HHHHHH-HHHHCCCCCCCeEEEEe
Q 008205 235 GLEVLN-AAKHLRMMESGYVWIVT 257 (574)
Q Consensus 235 ~~~il~-~a~~~gm~~~~~~~i~~ 257 (574)
+.++-| .|.++|+ .|+-+-|
T Consensus 87 i~D~~K~~A~~~~~---p~isVPT 107 (250)
T PF13685_consen 87 IIDIAKYAAFELGI---PFISVPT 107 (250)
T ss_dssp HHHHHHHHHHHHT-----EEEEES
T ss_pred HHHHHHHHHHhcCC---CEEEecc
Confidence 445554 4555553 3444443
No 233
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=80.13 E-value=10 Score=38.33 Aligned_cols=85 Identities=9% Similarity=-0.031 Sum_probs=59.3
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC--
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-- 231 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-- 231 (574)
..+.++++.++.+++.+|++.........+.+.+.+++.|+.+.....+..++...+..+.++..+..+.+.||-.+.
T Consensus 17 ~~l~~~l~~~g~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs 96 (377)
T cd08188 17 KLAGRYARRLGAKKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGGGS 96 (377)
T ss_pred HHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCch
Confidence 556777888899999999865433233567888999888876654333444456667888888888889998887643
Q ss_pred hHHHHHH
Q 008205 232 DIWGLEV 238 (574)
Q Consensus 232 ~~~~~~i 238 (574)
.-++...
T Consensus 97 viD~AK~ 103 (377)
T cd08188 97 PIDCAKG 103 (377)
T ss_pred HHHHHHH
Confidence 3444433
No 234
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=79.90 E-value=10 Score=38.41 Aligned_cols=86 Identities=3% Similarity=0.006 Sum_probs=61.1
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCC-CCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe--
Q 008205 154 AAIADIVDYFGWRNVIALYVDDD-HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT-- 230 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~-~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~-- 230 (574)
..+.++++.++ +++.+|++... ......+.+.+.+++.|+.+.....+.++++.++..+..+..++.+++.||-.+
T Consensus 15 ~~l~~~~~~~g-~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGGG 93 (380)
T cd08185 15 NELGEEALKPG-KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGGG 93 (380)
T ss_pred HHHHHHHHhcC-CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 45667778788 99999986543 234567889999998898775444455556777788888889889999998764
Q ss_pred ChHHHHHHHH
Q 008205 231 YDIWGLEVLN 240 (574)
Q Consensus 231 ~~~~~~~il~ 240 (574)
+.-++...+.
T Consensus 94 S~iD~aK~ia 103 (380)
T cd08185 94 SSMDTAKAIA 103 (380)
T ss_pred cHHHHHHHHH
Confidence 4445554443
No 235
>PRK10200 putative racemase; Provisional
Probab=79.24 E-value=20 Score=33.40 Aligned_cols=86 Identities=15% Similarity=0.044 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHhHhc-CcEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH
Q 008205 82 SRFLGMVEALTLLEN-ETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV 160 (574)
Q Consensus 82 ~~~~a~~~~~~l~~~-~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll 160 (574)
++...+...++.+.+ |+.+|+=|-.+..+. ...+-+..++|+|+. .++...-+
T Consensus 59 ~~~~~l~~~~~~L~~~g~~~iviaCNTah~~-~~~l~~~~~iPii~i-------------------------i~~~~~~~ 112 (230)
T PRK10200 59 KTGDILAEAALGLQRAGAEGIVLCTNTMHKV-ADAIESRCSLPFLHI-------------------------ADATGRAI 112 (230)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEECCchHHHH-HHHHHHhCCCCEeeh-------------------------HHHHHHHH
Confidence 566666666666554 888888665555444 455556678888762 12333334
Q ss_pred HHcCCeEEEEEEEcCCCCcchHHHHHHHHhhc-CcEE
Q 008205 161 DYFGWRNVIALYVDDDHGRNGIAALGDKLAEK-RCRL 196 (574)
Q Consensus 161 ~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~-g~~v 196 (574)
+..+-++|+++..... -....+++.+.+. |+.+
T Consensus 113 ~~~~~~~VglLaT~~T---i~s~~Y~~~l~~~~g~~~ 146 (230)
T PRK10200 113 TGAGMTRVALLGTRYT---MEQDFYRGRLTEQFSINC 146 (230)
T ss_pred HHcCCCeEEEeccHHH---HHHhHHHHHHHHhcCCeE
Confidence 4456678888875543 2334555565544 7665
No 236
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=78.67 E-value=20 Score=36.00 Aligned_cols=77 Identities=8% Similarity=0.053 Sum_probs=56.0
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCC-cchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHG-RNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g-~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~ 231 (574)
.-+.++++.++ +++.+|++...+- ....+.+.+.+++.|+.+.....+.++++.++..+..+..++.+++.||-.+.
T Consensus 15 ~~l~~~~~~~g-~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG 92 (357)
T cd08181 15 EKHGEELAALG-KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGG 92 (357)
T ss_pred HHHHHHHHHcC-CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 34567788888 8998888654322 23457889999988887654434555566777888888999999999888754
No 237
>COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein [Cell envelope biogenesis, outer membrane]
Probab=78.62 E-value=3.1 Score=40.70 Aligned_cols=74 Identities=11% Similarity=0.020 Sum_probs=57.6
Q ss_pred CceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhcccccccccc
Q 008205 470 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKIF 549 (574)
Q Consensus 470 ~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~~ 549 (574)
..|||.|... |-.- ..+++.-.||.-+|+++.++.||.+ .++.+.. +-+.|..+|.+|++|++
T Consensus 23 GvLrV~tins-p~sy----~~~~~~p~G~eYelak~Fa~yLgV~--Lki~~~~------n~dqLf~aL~ng~~DL~---- 85 (473)
T COG4623 23 GVLRVSTINS-PLSY----FEDKGGPTGLEYELAKAFADYLGVK--LKIIPAD------NIDQLFDALDNGNADLA---- 85 (473)
T ss_pred CeEEEEeecC-ccce----eccCCCccchhHHHHHHHHHHhCCe--EEEEecC------CHHHHHHHHhCCCccee----
Confidence 4478887653 2111 1234456699999999999999988 8887763 77999999999999999
Q ss_pred cceeeeEEEEeeCc
Q 008205 550 FNLVILFAILANGG 563 (574)
Q Consensus 550 ~~~~~~~~~~~~~~ 563 (574)
.+++.-.++|-
T Consensus 86 ---Aagl~~~~~~l 96 (473)
T COG4623 86 ---AAGLLYNSERL 96 (473)
T ss_pred ---cccccCChhHh
Confidence 88898888874
No 238
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=77.67 E-value=11 Score=38.11 Aligned_cols=86 Identities=12% Similarity=0.054 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC--
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-- 231 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-- 231 (574)
..+.+.++.++-+++.++++.........+.+.+.+++.|+.+.....+..+++.+...+..+..++.+++.||-.+.
T Consensus 17 ~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS 96 (377)
T cd08176 17 KEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGGGS 96 (377)
T ss_pred HHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcH
Confidence 456677888888899988854432224678899999988887654434444566777888888888899998887644
Q ss_pred hHHHHHHH
Q 008205 232 DIWGLEVL 239 (574)
Q Consensus 232 ~~~~~~il 239 (574)
.-++.+.+
T Consensus 97 ~iD~aK~i 104 (377)
T cd08176 97 PHDCAKAI 104 (377)
T ss_pred HHHHHHHH
Confidence 33444433
No 239
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=76.41 E-value=17 Score=36.98 Aligned_cols=86 Identities=13% Similarity=0.072 Sum_probs=56.8
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC--
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-- 231 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-- 231 (574)
..+.++++.+| +++.+|++..-......+.+.+.+++.|+.+.....+.++....+....++..++.+.+.||-.+.
T Consensus 12 ~~l~~~~~~~g-~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGGGS 90 (386)
T cd08191 12 RQLPRLAARLG-SRALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGLGGGS 90 (386)
T ss_pred HHHHHHHHHcC-CeEEEEECcchhhcchHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCch
Confidence 44667788888 899999854433335678899999988887654333332334555667777777888898887643
Q ss_pred hHHHHHHHH
Q 008205 232 DIWGLEVLN 240 (574)
Q Consensus 232 ~~~~~~il~ 240 (574)
.-++..++.
T Consensus 91 ~iD~aK~ia 99 (386)
T cd08191 91 CIDLAKIAG 99 (386)
T ss_pred HHHHHHHHH
Confidence 344444443
No 240
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional
Probab=76.03 E-value=11 Score=36.16 Aligned_cols=81 Identities=11% Similarity=0.103 Sum_probs=39.6
Q ss_pred CchhHHHHHHHHHHHHhhcccccCCCCCCCCeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC
Q 008205 1 MTKIYLLALVVVYNFCFSAGISMNGVSTIPPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTN 80 (574)
Q Consensus 1 M~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~ 80 (574)
||+.+++++++++ ++++| |+.. ....++|+||..-..+. . ...++.+.+-+.. |++++++.+++.
T Consensus 5 ~~~~~~~~~~~~~--l~l~g-C~~~-~~~~~~I~IG~~~~~~~------~-~~~~~~~~l~~~~----G~~Vel~~f~~~ 69 (271)
T PRK11063 5 FKTFAAVGALIGT--LALVG-CGQD-EKDPNHIKVGVIVGAEQ------Q-VAEVAQKVAKEKY----GLDVELVTFNDY 69 (271)
T ss_pred HHHHHHHHHHHHH--HHHHh-cccc-cCCCCcEEEEeCCCChH------H-HHHHHHHHHHHhc----CCeEEEEEecCc
Confidence 6665533333222 22344 5322 23345699998732211 1 1344444444332 678999988754
Q ss_pred CCHHHHHHHHHHhHhcCcEEEE
Q 008205 81 YSRFLGMVEALTLLENETVAII 102 (574)
Q Consensus 81 ~~~~~a~~~~~~l~~~~v~aii 102 (574)
..+.+| +.+..+.+-.
T Consensus 70 ~~~~~A------La~GdID~~~ 85 (271)
T PRK11063 70 VLPNEA------LSKGDIDANA 85 (271)
T ss_pred HHHHHH------HHcCCcceec
Confidence 343333 3344566533
No 241
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=74.93 E-value=17 Score=36.60 Aligned_cols=85 Identities=11% Similarity=0.040 Sum_probs=58.7
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC--
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-- 231 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-- 231 (574)
.-+.++++.++.+++.+|++...+ ....+.+.+++.|+.+.....+..+++.+...+.++.+++.+++.||-.+.
T Consensus 12 ~~l~~~~~~~g~~~~livtd~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 88 (367)
T cd08182 12 AKLPSLLKGLGGKRVLLVTGPRSA---IASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGGGS 88 (367)
T ss_pred HHHHHHHHhcCCCeEEEEeCchHH---HHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCcH
Confidence 456677888899999999855543 456678888888876654434544556677888888888889998887643
Q ss_pred hHHHHHHHHH
Q 008205 232 DIWGLEVLNA 241 (574)
Q Consensus 232 ~~~~~~il~~ 241 (574)
.-++..++..
T Consensus 89 ~~D~aK~ia~ 98 (367)
T cd08182 89 VLDTAKALAA 98 (367)
T ss_pred HHHHHHHHHH
Confidence 3445444443
No 242
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=74.35 E-value=13 Score=37.28 Aligned_cols=75 Identities=9% Similarity=0.014 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~ 231 (574)
..+.++++.++ +++.+|++...+. ...+.+.+.+++.|+.+.+. .+..+.+.++.....+..++.+++.||-.+.
T Consensus 12 ~~l~~~~~~~~-~r~livt~~~~~~-~~~~~v~~~L~~~~i~~~~~-~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG 86 (351)
T cd08170 12 DELGEYLARLG-KRALIIADEFVLD-LVGAKIEESLAAAGIDARFE-VFGGECTRAEIERLAEIARDNGADVVIGIGG 86 (351)
T ss_pred HHHHHHHHHhC-CeEEEEECHHHHH-HHHHHHHHHHHhCCCeEEEE-EeCCcCCHHHHHHHHHHHhhcCCCEEEEecC
Confidence 44666777776 8999998544332 56788889999888876543 3554566677888888888889998888754
No 243
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=73.65 E-value=20 Score=35.12 Aligned_cols=88 Identities=14% Similarity=0.036 Sum_probs=60.9
Q ss_pred EEEEEe---ccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHH
Q 008205 34 NIGAVF---ALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIA 110 (574)
Q Consensus 34 ~IG~l~---~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~ 110 (574)
++|.+- ......-.....+|...++..| |+.++...+..+-.|+..+.+.+..++.+|+.+|+. ......
T Consensus 128 ~vg~ig~i~G~~~p~~~~~~~gF~~Ga~~~n------p~i~v~~~~~gs~~D~~~~~~~a~~li~~GaDvI~~-~ag~~~ 200 (306)
T PF02608_consen 128 KVGFIGDIGGMDIPPVNRFINGFIAGAKYVN------PDIKVNVSYTGSFNDPAKAKEAAEALIDQGADVIFP-VAGGSG 200 (306)
T ss_dssp EEEEEEEEES--SCTTHHHHHHHHHHHHHTT------TT-EEEEEE-SSSS-HHHHHHHHHHHHHTT-SEEEE-E-CCCH
T ss_pred cccccccccCCCcHhHHHHHHHHHHHHHHhC------cCceEEEEEcCCcCchHHHHHHHHHHhhcCCeEEEE-CCCCCc
Confidence 456665 5553333567899999999998 567777777777679999999999999999998887 233344
Q ss_pred HHHHHhhccCCcc--EEecc
Q 008205 111 HLVSHIANEFQVP--LLSFA 128 (574)
Q Consensus 111 ~~va~~~~~~~iP--~Is~~ 128 (574)
..+...|.+.+.. .|...
T Consensus 201 ~gv~~aa~e~g~~~~~IG~d 220 (306)
T PF02608_consen 201 QGVIQAAKEAGVYGYVIGVD 220 (306)
T ss_dssp HHHHHHHHHHTHETEEEEEE
T ss_pred hHHHHHHHHcCCceEEEEec
Confidence 4566777888888 77653
No 244
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=72.55 E-value=29 Score=30.45 Aligned_cols=46 Identities=11% Similarity=0.249 Sum_probs=32.8
Q ss_pred HHhHhc--CcEEEEcCCChH---HHHHHHHhhccCCccEEecccCCCCcCC
Q 008205 91 LTLLEN--ETVAIIGPQFSV---IAHLVSHIANEFQVPLLSFAATDPSLSS 136 (574)
Q Consensus 91 ~~l~~~--~v~aiiGp~~s~---~~~~va~~~~~~~iP~Is~~~~~~~ls~ 136 (574)
.+++.+ .++.++|..... ....+..+++.+++|+++.......+..
T Consensus 28 a~lI~~AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~ 78 (171)
T PRK00945 28 AMMIKKAKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLID 78 (171)
T ss_pred HHHHHhCCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEcccccccccc
Confidence 344443 889999986643 6777899999999999986544444444
No 245
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=72.55 E-value=21 Score=35.38 Aligned_cols=86 Identities=8% Similarity=0.029 Sum_probs=57.0
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC--
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-- 231 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-- 231 (574)
..+.++++.++.+++.+|++..... ...+.+.+.+++. +.+........+.+.++....+..+++.+.+.||..+.
T Consensus 12 ~~l~~~~~~~g~~~~liv~~~~~~~-~~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs 89 (332)
T cd07766 12 EKIGEEIKRGGFDRALVVSDEGVVK-GVGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGGGS 89 (332)
T ss_pred HHHHHHHHhcCCCeEEEEeCCchhh-hHHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCch
Confidence 3456677888999999998554332 5667888888776 55543333333356677888888888888898887643
Q ss_pred hHHHHHHHHH
Q 008205 232 DIWGLEVLNA 241 (574)
Q Consensus 232 ~~~~~~il~~ 241 (574)
.-++..++..
T Consensus 90 ~~D~aK~ia~ 99 (332)
T cd07766 90 TLDTAKAVAA 99 (332)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 246
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=72.26 E-value=31 Score=34.98 Aligned_cols=88 Identities=8% Similarity=0.074 Sum_probs=59.5
Q ss_pred CceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCC-CcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHh
Q 008205 140 PFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDH-GRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTV 218 (574)
Q Consensus 140 ~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~-g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i 218 (574)
|.-+...+.. ...+.++++.++ +++.+|++.... .....+.+.+.++..|+.+.....+.++++..+....++..
T Consensus 7 p~~i~~G~g~---~~~l~~~~~~~~-~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~ 82 (382)
T cd08187 7 PTKIIFGKGT---ESELGKELKKYG-KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELC 82 (382)
T ss_pred CCEEEECCCH---HHHHHHHHHHhC-CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHH
Confidence 4444444433 245667777775 899999754322 12346789999998888765444455455667788888889
Q ss_pred hcCCCeEEEEEeC
Q 008205 219 SSMMSRILILHTY 231 (574)
Q Consensus 219 k~~~~~viil~~~ 231 (574)
+..+++.||-.+.
T Consensus 83 ~~~~~D~IIaiGG 95 (382)
T cd08187 83 KEEKVDFILAVGG 95 (382)
T ss_pred HHcCCCEEEEeCC
Confidence 9999999887643
No 247
>COG1464 NlpA ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]
Probab=71.81 E-value=22 Score=33.40 Aligned_cols=27 Identities=11% Similarity=0.276 Sum_probs=21.8
Q ss_pred hhccceEEEEEecCCChHHHHHHHHHH
Q 008205 276 DDIQGVLTLRMYTQSSEEKRKFVTRWR 302 (574)
Q Consensus 276 ~~~~g~~~~~~~~~~~~~~~~f~~~~~ 302 (574)
....|++.++..+.+++.++.+++.|+
T Consensus 222 spY~Niivvr~~d~d~~~ik~lv~a~q 248 (268)
T COG1464 222 SPYVNIIVVREEDKDDPAVKKLVEAYQ 248 (268)
T ss_pred CcceEEEEEcccccCCHHHHHHHHHHc
Confidence 356788888888888888888888876
No 248
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=71.13 E-value=22 Score=36.10 Aligned_cols=87 Identities=11% Similarity=0.070 Sum_probs=59.2
Q ss_pred HHHHHHHHHc---CCeEEEEEEEcCCCC-cchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEE
Q 008205 154 AAIADIVDYF---GWRNVIALYVDDDHG-RNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILH 229 (574)
Q Consensus 154 ~ai~~ll~~~---~W~~v~ii~~~~~~g-~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~ 229 (574)
..+.++++.+ |.+++.+|++..... ....+.+.+.+++.|+.+.....+.++.+.++.....+.+++.+++.||..
T Consensus 12 ~~l~~~l~~~~~~g~kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIai 91 (383)
T cd08186 12 EKIGEILKDLKSKGISKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAI 91 (383)
T ss_pred HHHHHHHHHhcccCCCEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 4456667776 789999998544322 234678889999888866544344445666778888888988899988876
Q ss_pred e--ChHHHHHHHH
Q 008205 230 T--YDIWGLEVLN 240 (574)
Q Consensus 230 ~--~~~~~~~il~ 240 (574)
+ +.-++..++.
T Consensus 92 GGGS~iD~aK~ia 104 (383)
T cd08186 92 GGGSPIDSAKSAA 104 (383)
T ss_pred CCccHHHHHHHHH
Confidence 4 3444444443
No 249
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=70.85 E-value=63 Score=28.51 Aligned_cols=127 Identities=15% Similarity=0.147 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHh-HhcCcEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH
Q 008205 82 SRFLGMVEALTL-LENETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV 160 (574)
Q Consensus 82 ~~~~a~~~~~~l-~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll 160 (574)
+-..++..+.++ ..+|+.+||.-+ .++. -+-+..++|+|.... +..+...++...-
T Consensus 18 ~~e~~v~~a~~~~~~~g~dViIsRG--~ta~---~lr~~~~iPVV~I~~------------------s~~Dil~al~~a~ 74 (176)
T PF06506_consen 18 SLEEAVEEARQLLESEGADVIISRG--GTAE---LLRKHVSIPVVEIPI------------------SGFDILRALAKAK 74 (176)
T ss_dssp -HHHHHHHHHHHHTTTT-SEEEEEH--HHHH---HHHCC-SS-EEEE---------------------HHHHHHHHHHCC
T ss_pred cHHHHHHHHHHhhHhcCCeEEEECC--HHHH---HHHHhCCCCEEEECC------------------CHhHHHHHHHHHH
Confidence 456788888888 788999999532 2332 233556899987421 2333445555533
Q ss_pred HHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHH
Q 008205 161 DYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLN 240 (574)
Q Consensus 161 ~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~ 240 (574)
.++ ++++++...+.. .....+.+.+ |+.+.... + .+..++...+++++..+.++||-... ..+
T Consensus 75 -~~~-~~Iavv~~~~~~--~~~~~~~~ll---~~~i~~~~-~---~~~~e~~~~i~~~~~~G~~viVGg~~------~~~ 137 (176)
T PF06506_consen 75 -KYG-PKIAVVGYPNII--PGLESIEELL---GVDIKIYP-Y---DSEEEIEAAIKQAKAEGVDVIVGGGV------VCR 137 (176)
T ss_dssp -CCT-SEEEEEEESS-S--CCHHHHHHHH---T-EEEEEE-E---SSHHHHHHHHHHHHHTT--EEEESHH------HHH
T ss_pred -hcC-CcEEEEeccccc--HHHHHHHHHh---CCceEEEE-E---CCHHHHHHHHHHHHHcCCcEEECCHH------HHH
Confidence 344 899999766543 2356666666 55665432 3 35778999999999999987765432 356
Q ss_pred HHHHCCCC
Q 008205 241 AAKHLRMM 248 (574)
Q Consensus 241 ~a~~~gm~ 248 (574)
.|++.|+.
T Consensus 138 ~A~~~gl~ 145 (176)
T PF06506_consen 138 LARKLGLP 145 (176)
T ss_dssp HHHHTTSE
T ss_pred HHHHcCCc
Confidence 67888864
No 250
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=70.56 E-value=46 Score=30.55 Aligned_cols=85 Identities=12% Similarity=0.095 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe-
Q 008205 152 QMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT- 230 (574)
Q Consensus 152 ~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~- 230 (574)
+...++.++.. .++++|....+ -.....+.+...+..+.+...-|...+..++...-+++++.++++|+++|
T Consensus 115 l~~lV~al~~~---~~vGVivP~~e----Q~~~~~~kW~~l~~~~~~a~asPy~~~~~~l~~Aa~~L~~~gadlIvLDCm 187 (221)
T PF07302_consen 115 LPPLVAALVGG---HQVGVIVPLPE----QIAQQAEKWQPLGNPVVVAAASPYEGDEEELAAAARELAEQGADLIVLDCM 187 (221)
T ss_pred HHHHHHHhcCC---CeEEEEecCHH----HHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEECC
Confidence 33444444433 79999997764 23444455555554444443333335677888889999999999999997
Q ss_pred -ChHHHHHHHHHHH
Q 008205 231 -YDIWGLEVLNAAK 243 (574)
Q Consensus 231 -~~~~~~~il~~a~ 243 (574)
+....+++++++.
T Consensus 188 GYt~~~r~~~~~~~ 201 (221)
T PF07302_consen 188 GYTQEMRDIVQRAL 201 (221)
T ss_pred CCCHHHHHHHHHHh
Confidence 5577777777664
No 251
>PRK07475 hypothetical protein; Provisional
Probab=70.42 E-value=19 Score=33.82 Aligned_cols=82 Identities=17% Similarity=0.101 Sum_probs=46.6
Q ss_pred CHHHHHHHH-HHhHhcCcEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH
Q 008205 82 SRFLGMVEA-LTLLENETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV 160 (574)
Q Consensus 82 ~~~~a~~~~-~~l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll 160 (574)
++......+ .+|...|+.+|+.+ |.........+....+||+++. +.+.+..+
T Consensus 62 ~~~~~l~~aa~~L~~~G~d~I~~~-Cgt~~~~~~~l~~~~~VPv~~s-------------------------s~~~v~~l 115 (245)
T PRK07475 62 SLLDAFVAAARELEAEGVRAITTS-CGFLALFQRELAAALGVPVATS-------------------------SLLQVPLI 115 (245)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEec-hHHHHHHHHHHHHHcCCCEecc-------------------------HHHHHHHH
Confidence 444444444 44445599999874 4444444556667789998851 12222233
Q ss_pred HHc--CCeEEEEEEEcCCCCcchHHHHHHHHhhcCcE
Q 008205 161 DYF--GWRNVIALYVDDDHGRNGIAALGDKLAEKRCR 195 (574)
Q Consensus 161 ~~~--~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~ 195 (574)
+.. +-++|+++..+... . .++.+++.|+.
T Consensus 116 ~~~~~~~~kIGILtt~~t~---l---~~~~l~~~Gi~ 146 (245)
T PRK07475 116 QALLPAGQKVGILTADASS---L---TPAHLLAVGVP 146 (245)
T ss_pred HHhccCCCeEEEEeCCchh---h---hHHHHHhCCCC
Confidence 332 35788888866542 1 24567777764
No 252
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=70.14 E-value=21 Score=35.57 Aligned_cols=84 Identities=8% Similarity=0.104 Sum_probs=56.0
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC--
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-- 231 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-- 231 (574)
.-+.+.++.++ +++.+|++...+ ....+.+.+.+++.|+.+.....+..+++.++.....+..++.+.+.||-.+.
T Consensus 12 ~~l~~~~~~~~-~r~liv~d~~~~-~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGGGs 89 (345)
T cd08171 12 KKIPEVCEKYG-KKVVVIGGKTAL-AAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGGGK 89 (345)
T ss_pred HHHHHHHHhcC-CEEEEEeCHHHH-HHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcH
Confidence 44566777777 899888854433 33467788888888887654444554556677777788888888998887643
Q ss_pred hHHHHHHH
Q 008205 232 DIWGLEVL 239 (574)
Q Consensus 232 ~~~~~~il 239 (574)
.-++..++
T Consensus 90 ~~D~aK~i 97 (345)
T cd08171 90 AIDTVKVL 97 (345)
T ss_pred HHHHHHHH
Confidence 33444443
No 253
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=69.19 E-value=41 Score=29.21 Aligned_cols=34 Identities=21% Similarity=0.452 Sum_probs=27.9
Q ss_pred cCcEEEEcCCCh--HHHHHHHHhhccCCccEEeccc
Q 008205 96 NETVAIIGPQFS--VIAHLVSHIANEFQVPLLSFAA 129 (574)
Q Consensus 96 ~~v~aiiGp~~s--~~~~~va~~~~~~~iP~Is~~~ 129 (574)
+.++.++|.... .....+..+++.+++|+++...
T Consensus 28 KRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~ 63 (162)
T TIGR00315 28 KRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATAD 63 (162)
T ss_pred CCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCc
Confidence 389999998664 6678889999999999998543
No 254
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=68.65 E-value=1.1e+02 Score=29.17 Aligned_cols=115 Identities=10% Similarity=0.146 Sum_probs=62.7
Q ss_pred cchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCCh-HHHHHHHHhhccCCcc
Q 008205 45 IGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFS-VIAHLVSHIANEFQVP 123 (574)
Q Consensus 45 ~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s-~~~~~va~~~~~~~iP 123 (574)
.|..-..++...+.+|| |..++..+ +..-++. ...+++..+...||-...+ ..-..+..+|...++|
T Consensus 81 vG~~Kve~~~~rl~~IN------P~~~V~~i--~~~i~~e----~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip 148 (268)
T PRK15116 81 VGLAKAEVMAERIRQIN------PECRVTVV--DDFITPD----NVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIP 148 (268)
T ss_pred cChHHHHHHHHHHHhHC------CCcEEEEE--ecccChh----hHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCC
Confidence 34444456666666665 44455443 2222222 2234555567777765555 4556688999999999
Q ss_pred EEecccCCCCcCCCCCCceEEecC----ChHHHHHHHHHHHHH-cCCe-------EEEEEEEcC
Q 008205 124 LLSFAATDPSLSSLQYPFFVRTTQ----SDLYQMAAIADIVDY-FGWR-------NVIALYVDD 175 (574)
Q Consensus 124 ~Is~~~~~~~ls~~~~~~~~r~~p----s~~~~~~ai~~ll~~-~~W~-------~v~ii~~~~ 175 (574)
+|+.++....+. |.-+++.- ....+++.+-..|++ +|.+ .+-+||+..
T Consensus 149 ~I~~gGag~k~d----p~~~~~~di~~t~~~pla~~~R~~lr~~~~~~~~~~~~~~~~~v~S~E 208 (268)
T PRK15116 149 LVTTGGAGGQID----PTQIQVVDLAKTIQDPLAAKLRERLKSDFGVVKNSKGKLGVDCVFSTE 208 (268)
T ss_pred EEEECCcccCCC----CCeEEEEeeecccCChHHHHHHHHHHHhhCCCcccCccCCeEEEeCCC
Confidence 998755443332 55555431 112244555555555 5543 255566443
No 255
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=68.02 E-value=88 Score=31.16 Aligned_cols=75 Identities=15% Similarity=0.019 Sum_probs=57.3
Q ss_pred eEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHH
Q 008205 32 VLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAH 111 (574)
Q Consensus 32 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~ 111 (574)
.-++|.+..+....-.....+|...++..|. ..++...+..+=.|+..+...+..++++|+.+|.....+....
T Consensus 161 ~~~vG~vgg~~~p~v~~f~~gF~~Gak~~np------~i~v~v~~~gsf~D~~k~k~~a~~li~~GaDVI~~~ag~~~~g 234 (345)
T COG1744 161 SGKVGFVGGMDIPEVNRFINGFLAGAKSVNP------DIKVKVVYVGSFSDPAKGKEAANALIDQGADVIYPAAGGTGVG 234 (345)
T ss_pred CCceeEEecccchhhHHHHHHHHHHHHhhCC------CccEEEEEecCccChHHHHHHHHHHHhcCCCEEEecCCCCcch
Confidence 4467777766644445778899999999985 4667777776667899998899999999999999876665544
Q ss_pred H
Q 008205 112 L 112 (574)
Q Consensus 112 ~ 112 (574)
.
T Consensus 235 v 235 (345)
T COG1744 235 V 235 (345)
T ss_pred H
Confidence 3
No 256
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=67.81 E-value=13 Score=34.94 Aligned_cols=78 Identities=10% Similarity=-0.012 Sum_probs=54.6
Q ss_pred EEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEE-eChHHHHHHHHHHHH
Q 008205 168 VIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILH-TYDIWGLEVLNAAKH 244 (574)
Q Consensus 168 v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~-~~~~~~~~il~~a~~ 244 (574)
|++|..+ ++|.....+.+++.+++.|+.+... .+...+.......++++...+++.||+. .++.....+++++.+
T Consensus 1 I~vi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~--~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~ 78 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQQVIKGAKAAAKELGYEVEIV--FDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKA 78 (257)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHHHTCEEEEE--EESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHH
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEe--CCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhh
Confidence 4555533 3456667788888888889887664 2222345566677788777888888877 556667788999998
Q ss_pred CCC
Q 008205 245 LRM 247 (574)
Q Consensus 245 ~gm 247 (574)
.|+
T Consensus 79 ~gI 81 (257)
T PF13407_consen 79 AGI 81 (257)
T ss_dssp TTS
T ss_pred cCc
Confidence 876
No 257
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=67.61 E-value=30 Score=34.98 Aligned_cols=82 Identities=13% Similarity=0.086 Sum_probs=57.0
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC--
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-- 231 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-- 231 (574)
..+.++++.++ +++.+|++.... ..+.+.+.+++.|+.+.... +..+++.+++.+.++..++.+.+.||-.+.
T Consensus 12 ~~l~~~l~~~~-~r~livtd~~~~---~~~~v~~~L~~~g~~~~~~~-~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS 86 (374)
T cd08183 12 KELPALAAELG-RRVLLVTGASSL---RAAWLIEALRAAGIEVTHVV-VAGEPSVELVDAAVAEARNAGCDVVIAIGGGS 86 (374)
T ss_pred HHHHHHHHHcC-CcEEEEECCchH---HHHHHHHHHHHcCCeEEEec-CCCCcCHHHHHHHHHHHHhcCCCEEEEecCch
Confidence 34666777775 899999854432 67788888998888765433 344556677888888898899998888754
Q ss_pred hHHHHHHHH
Q 008205 232 DIWGLEVLN 240 (574)
Q Consensus 232 ~~~~~~il~ 240 (574)
.-++..++.
T Consensus 87 ~~D~aK~ia 95 (374)
T cd08183 87 VIDAGKAIA 95 (374)
T ss_pred HHHHHHHHH
Confidence 344444443
No 258
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=67.37 E-value=25 Score=35.45 Aligned_cols=75 Identities=11% Similarity=0.015 Sum_probs=53.7
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~ 231 (574)
..+.+.++.++ +++.+|++...+ ....+.+.+.++..|+.+.+. .+..+...+.....++.+++.+.+.||-.+.
T Consensus 19 ~~l~~~l~~~g-~~~livtd~~~~-~~~~~~v~~~l~~~~~~~~~~-~~~~ep~~~~v~~~~~~~~~~~~d~IIavGG 93 (366)
T PRK09423 19 ARLGEYLKPLG-KRALVIADEFVL-GIVGDRVEASLKEAGLTVVFE-VFNGECSDNEIDRLVAIAEENGCDVVIGIGG 93 (366)
T ss_pred HHHHHHHHHcC-CEEEEEEChhHH-HHHHHHHHHHHHhCCCeEEEE-EeCCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 45667788888 999999854433 236678888888888876443 3444556677888888888888998887654
No 259
>TIGR00854 pts-sorbose PTS system, mannose/fructose/sorbose family, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIB components of this family of PTS transporters.
Probab=66.42 E-value=49 Score=28.38 Aligned_cols=81 Identities=14% Similarity=0.064 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC
Q 008205 152 QMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (574)
Q Consensus 152 ~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~ 231 (574)
.++.+..+.++++-+++.++- |........+.+.+.....|+++... +.++....+++-...+.++++++-+
T Consensus 13 HGQV~~~W~~~~~~~~IiVvd-D~~A~D~~~k~~lkma~P~gvk~~i~-------sve~a~~~l~~~~~~~~~v~vl~k~ 84 (151)
T TIGR00854 13 HGQVGTTWTKVAGANRIIVVN-DDVANDEVRQTLMGIVAPTGFKVRFV-------SLEKTINVIHKPAYHDQTIFLLFRN 84 (151)
T ss_pred hhHhhhhhhcccCCCEEEEEc-ccccCCHHHHHHHHhhCCCCCEEEEE-------EHHHHHHHHhCcCCCCceEEEEECC
Confidence 467778899999999998884 33333446677777777778877543 2334555666555567799999999
Q ss_pred hHHHHHHHH
Q 008205 232 DIWGLEVLN 240 (574)
Q Consensus 232 ~~~~~~il~ 240 (574)
+.++..+++
T Consensus 85 ~~da~~l~~ 93 (151)
T TIGR00854 85 PQDVLTLVE 93 (151)
T ss_pred HHHHHHHHH
Confidence 999888765
No 260
>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed
Probab=66.19 E-value=2.8 Score=40.63 Aligned_cols=32 Identities=19% Similarity=0.100 Sum_probs=28.1
Q ss_pred ChHHHHHHhhhcccccccccccceeeeEEEEeeCceeee
Q 008205 529 KRFDLLRLVSEEVSMKRKKIFFNLVILFAILANGGFLVP 567 (574)
Q Consensus 529 ~~~gli~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~ 567 (574)
.|++++..|.+|++|++ +++++++.||...++
T Consensus 52 ~~~~i~~~L~sG~vDlg-------i~g~~~~~er~~~v~ 83 (287)
T PRK00489 52 RPDDIPGYVADGVVDLG-------ITGEDLLEESGADVE 83 (287)
T ss_pred CcHHHHHHHHcCCCCEE-------EcchHHHHHCCCCce
Confidence 89999999999999999 999999999864433
No 261
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=65.59 E-value=11 Score=30.67 Aligned_cols=86 Identities=14% Similarity=0.136 Sum_probs=46.7
Q ss_pred eEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhh--cCCCeEEEEEeChHHHHHHHHHHH
Q 008205 166 RNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVS--SMMSRILILHTYDIWGLEVLNAAK 243 (574)
Q Consensus 166 ~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik--~~~~~viil~~~~~~~~~il~~a~ 243 (574)
|++++|...+..+.- ...+.+.+.+.|.++... .+....-+=......+. ....+.++++..++....+++++.
T Consensus 1 ksiAVvGaS~~~~~~-g~~v~~~l~~~G~~v~~V---np~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~ 76 (116)
T PF13380_consen 1 KSIAVVGASDNPGKF-GYRVLRNLKAAGYEVYPV---NPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAA 76 (116)
T ss_dssp -EEEEET--SSTTSH-HHHHHHHHHHTT-EEEEE---STTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHH
T ss_pred CEEEEEcccCCCCCh-HHHHHHHHHhCCCEEEEE---CCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHH
Confidence 578888755543333 344555555577665432 22111100011222333 357899999999999999999999
Q ss_pred HCCCCCCCeEEEEeC
Q 008205 244 HLRMMESGYVWIVTD 258 (574)
Q Consensus 244 ~~gm~~~~~~~i~~~ 258 (574)
++| .+.+|+.++
T Consensus 77 ~~g---~~~v~~~~g 88 (116)
T PF13380_consen 77 ALG---VKAVWLQPG 88 (116)
T ss_dssp HHT----SEEEE-TT
T ss_pred HcC---CCEEEEEcc
Confidence 987 578899877
No 262
>PRK09756 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=65.36 E-value=56 Score=28.32 Aligned_cols=81 Identities=7% Similarity=-0.029 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHh-hcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe
Q 008205 152 QMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLA-EKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT 230 (574)
Q Consensus 152 ~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~-~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~ 230 (574)
.++.+..++++++-+++.++- |........+.+.+... ..|+++... +..+....+++ +..+.++++++-
T Consensus 17 HGQV~~~W~~~~~~~~IiVvd-D~vA~D~~~k~~lkma~~P~gvk~~i~-------sv~~a~~~l~~-~~~~~~vlvl~~ 87 (158)
T PRK09756 17 HGQVGVTWTSTIGANLLVVVD-DVVANDDIQQKLMGITAETYGFGIRFF-------TIEKTINVIGK-AAPHQKIFLICR 87 (158)
T ss_pred hHHHHHhhhcccCCCEEEEEc-chhcCCHHHHHHHHhcCCCCCCEEEEE-------EHHHHHHHHHh-ccCCceEEEEEC
Confidence 567788899999999998884 32233345666666655 677777532 23445566666 556778999999
Q ss_pred ChHHHHHHHHH
Q 008205 231 YDIWGLEVLNA 241 (574)
Q Consensus 231 ~~~~~~~il~~ 241 (574)
++.++..++++
T Consensus 88 ~~~da~~l~~~ 98 (158)
T PRK09756 88 TPQTVRKLVEG 98 (158)
T ss_pred CHHHHHHHHHc
Confidence 99998887663
No 263
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=65.31 E-value=33 Score=32.43 Aligned_cols=77 Identities=9% Similarity=-0.008 Sum_probs=50.0
Q ss_pred EEEEEE--cCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe-ChHHHHHHHHHHHH
Q 008205 168 VIALYV--DDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT-YDIWGLEVLNAAKH 244 (574)
Q Consensus 168 v~ii~~--~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~-~~~~~~~il~~a~~ 244 (574)
++++.. ++.+.....+.+.+.+++.|+.+.... ...+.......++.+...+.+.||+.. .......+++++.+
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~l~~~~~~~vdgii~~~~~~~~~~~~i~~~~~ 78 (273)
T cd06305 2 IAVVRYGGSGDFDQAYLAGTKAEAEALGGDLRVYD---AGGDDAKQADQIDQAIAQKVDAIIIQHGRAEVLKPWVKRALD 78 (273)
T ss_pred eEEEeecCCCcHHHHHHHHHHHHHHHcCCEEEEEC---CCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhHHHHHHHHH
Confidence 566655 345666677888889999998876532 112334445666666667888888864 33444566777877
Q ss_pred CCC
Q 008205 245 LRM 247 (574)
Q Consensus 245 ~gm 247 (574)
.|+
T Consensus 79 ~~i 81 (273)
T cd06305 79 AGI 81 (273)
T ss_pred cCC
Confidence 664
No 264
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=65.29 E-value=1.3e+02 Score=28.55 Aligned_cols=205 Identities=11% Similarity=0.068 Sum_probs=110.0
Q ss_pred eEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC--CCHHHHHHHHHHhHhc-CcEEEEc-CCCh
Q 008205 32 VLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTN--YSRFLGMVEALTLLEN-ETVAIIG-PQFS 107 (574)
Q Consensus 32 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~--~~~~~a~~~~~~l~~~-~v~aiiG-p~~s 107 (574)
+++||++.+.-+. +....+|.+..+++.-.. .+.-+++-.. ......+..+..|..+ .+-|||- -.-+
T Consensus 2 ~~kIGivTgtvSq-~ed~~r~Ae~l~~~Yg~~-------~I~h~tyPdnf~~e~EttIskI~~lAdDp~mKaIVv~q~vp 73 (275)
T PF12683_consen 2 DYKIGIVTGTVSQ-SEDEYRGAEELIKKYGDV-------MIKHVTYPDNFMSEQETTISKIVSLADDPDMKAIVVSQAVP 73 (275)
T ss_dssp -EEEEEEE--TTT--HHHHHHHHHHHHHHHHH-------EEEEEE--TTGGGCHHHHHHHHHGGGG-TTEEEEEEE-SS-
T ss_pred ceEEEEEeCCccc-ChHHHHHHHHHHHHhCcc-------eEEEEeCCCcccchHHHHHHHHHHhccCCCccEEEEeCCCc
Confidence 5799999876442 345556666666654322 4555555332 2445555566666555 5666553 2334
Q ss_pred HHHHHHHHhhc-cCCccEEecccCC-CCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCc----ch
Q 008205 108 VIAHLVSHIAN-EFQVPLLSFAATD-PSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGR----NG 181 (574)
Q Consensus 108 ~~~~~va~~~~-~~~iP~Is~~~~~-~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~----~~ 181 (574)
.++.++..+=+ +-.|..|+-.+.. |..-...-. +-+.+.....+..++...+.+|-+.|+.+.....-+. ..
T Consensus 74 Gt~~af~kIkekRpDIl~ia~~~~EDp~~i~~~aD--i~~~~D~~~~G~~i~~~Ak~mGAktFVh~sfprhms~~~l~~R 151 (275)
T PF12683_consen 74 GTAEAFRKIKEKRPDILLIAGEPHEDPEVISSAAD--IVVNPDEISRGYTIVWAAKKMGAKTFVHYSFPRHMSYELLARR 151 (275)
T ss_dssp --HHHHHHHHHH-TTSEEEESS--S-HHHHHHHSS--EEEE--HHHHHHHHHHHHHHTT-S-EEEEEETTGGGSHHHHHH
T ss_pred chHHHHHHHHhcCCCeEEEcCCCcCCHHHHhhccC--eEeccchhhccHHHHHHHHHcCCceEEEEechhhcchHHHHHH
Confidence 45556666553 4578777633222 111111112 4455777888899999999999999999965543332 23
Q ss_pred HHHHHHHHhhcCcEEEEEeecCCCCChh--hH-----HHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCC
Q 008205 182 IAALGDKLAEKRCRLSHKVPLSPKGSRN--QI-----IDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLR 246 (574)
Q Consensus 182 ~~~l~~~~~~~g~~v~~~~~~~~~~~~~--~~-----~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~g 246 (574)
.+.+++.+++.|++........+..+.. .. ...-+.+++.+.++-+.+++......+++++.+.|
T Consensus 152 r~~M~~~C~~lGi~fv~~taPDP~sd~gv~gaqqfIlE~vp~~i~kYGkdtaff~TN~a~~epllk~~~~~g 223 (275)
T PF12683_consen 152 RDIMEEACKDLGIKFVEVTAPDPTSDVGVAGAQQFILEDVPKWIKKYGKDTAFFCTNDAMTEPLLKQALEYG 223 (275)
T ss_dssp HHHHHHHHHHCT--EEEEEE---SSTCHHHHHHHHHHHHHHHHHHHH-S--EEEESSHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHhCCceeEEecCccccHHHHHHHHHcC
Confidence 4567778888999887765444332211 11 22234567778998999999999999999999876
No 265
>cd00001 PTS_IIB_man PTS_IIB, PTS system, Mannose/sorbose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. The active site histidine receives a phosphate group from the IIA subunit and transfers it to the substrate.
Probab=65.03 E-value=53 Score=28.18 Aligned_cols=82 Identities=11% Similarity=0.051 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC
Q 008205 152 QMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (574)
Q Consensus 152 ~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~ 231 (574)
.++.+..++++++-+++.++= |........+.+.......|+++... +.++....+++-+..+.+++++.-+
T Consensus 12 HGQV~~~W~~~~~~~~IvVvd-D~~A~D~~~k~~l~ma~P~gvk~~i~-------sve~a~~~l~~~~~~~~~v~il~k~ 83 (151)
T cd00001 12 HGQVATTWTKELNANRIIVVN-DEVANDELRKTLLKLAAPPGVKLRIF-------TVEKAIEAINSPKYDKQRVFLLFKN 83 (151)
T ss_pred hhHhhhhhhcccCCCEEEEEc-ccccCCHHHHHHHHhhCCCCCeEEEE-------EHHHHHHHHhCcCCCCceEEEEECC
Confidence 567788899999999998874 33333446667777777778877543 2344556666655567899999999
Q ss_pred hHHHHHHHHH
Q 008205 232 DIWGLEVLNA 241 (574)
Q Consensus 232 ~~~~~~il~~ 241 (574)
+.++..+++.
T Consensus 84 ~~~~~~l~~~ 93 (151)
T cd00001 84 PQDVLRLVEG 93 (151)
T ss_pred HHHHHHHHHc
Confidence 9998887653
No 266
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=64.36 E-value=91 Score=26.64 Aligned_cols=120 Identities=17% Similarity=0.192 Sum_probs=70.6
Q ss_pred HHHhHhc--CcEEEEcCCCh--HHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCC
Q 008205 90 ALTLLEN--ETVAIIGPQFS--VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGW 165 (574)
Q Consensus 90 ~~~l~~~--~v~aiiGp~~s--~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W 165 (574)
+..++++ ....|+||.-- +.-..+..+.++++||.+..+++...+.+..-. +......++..+++.=+|
T Consensus 28 ~ammIkkAkrPLlivGp~~~dee~~E~~vKi~ekfnipivaTa~~~~~~~~~~i~-------~~~~~lh~it~~l~Dp~w 100 (170)
T COG1880 28 VAMMIKKAKRPLLIVGPLALDEELLELAVKIIEKFNIPIVATASSMGNLIGRGIG-------SEYINLHAITQYLTDPNW 100 (170)
T ss_pred HHHHHHhcCCceEEecccccCHHHHHHHHHHHHhcCCceEecchhhcchhhcccc-------cchhHHHHHHHHhcCCCC
Confidence 3445554 88999998765 456778899999999999876666656553211 233345777788887666
Q ss_pred eE---------EEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCC-------CChhhHHHHHHHh
Q 008205 166 RN---------VIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPK-------GSRNQIIDTLLTV 218 (574)
Q Consensus 166 ~~---------v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~-------~~~~~~~~~l~~i 218 (574)
.- |.++..-..|....++.+++...- ..|+....+.++ ...+++-+.|+++
T Consensus 101 ~G~dg~g~yDlviflG~~~yy~sq~Ls~lKhFs~i--~tiaId~~Y~pnAd~SFpNl~kde~~~~L~el 167 (170)
T COG1880 101 PGFDGNGNYDLVIFLGSIYYYLSQVLSGLKHFSNI--KTIAIDRYYQPNADYSFPNLSKDEYLAYLDEL 167 (170)
T ss_pred CCcCCCCCcceEEEEeccHHHHHHHHHHhhhhhcc--eEEEeccccCcCccccCCCcCHHHHHHHHHHH
Confidence 43 444444444444455555544311 133333333322 2345566666655
No 267
>PRK11425 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=63.37 E-value=63 Score=27.97 Aligned_cols=80 Identities=13% Similarity=0.079 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC
Q 008205 152 QMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (574)
Q Consensus 152 ~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~ 231 (574)
.++.+..+.++++-+++.++- |........+.+.......|+++... +.++....+++ +..+.+++++.-+
T Consensus 15 HGQV~~~W~~~~~~~~IvVvd-D~~A~D~~~k~~l~ma~P~gvk~~i~-------sv~~a~~~l~~-~~~~~~v~il~k~ 85 (157)
T PRK11425 15 HGQVGVQWVGFAGANLVLVAN-DEVAEDPVQQNLMEMVLAEGIAVRFW-------TLQKVIDNIHR-AADRQKILLVCKT 85 (157)
T ss_pred hHHhhhhhhcccCCCEEEEEc-chhcCCHHHHHHHHhhCCCCCeEEEE-------EHHHHHHHHhc-cCCCceEEEEECC
Confidence 567788899999999987774 33333446667777777778877543 23455666766 5566789999999
Q ss_pred hHHHHHHHH
Q 008205 232 DIWGLEVLN 240 (574)
Q Consensus 232 ~~~~~~il~ 240 (574)
+.++.++++
T Consensus 86 ~~d~~~l~~ 94 (157)
T PRK11425 86 PADFLTLVK 94 (157)
T ss_pred HHHHHHHHH
Confidence 999887765
No 268
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=63.13 E-value=1.1e+02 Score=26.96 Aligned_cols=98 Identities=11% Similarity=-0.025 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhc--CcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEE
Q 008205 151 YQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEK--RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILIL 228 (574)
Q Consensus 151 ~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~--g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil 228 (574)
++...+.+.+...+ .++.++.+..+ .++.+.+.+++. |+.++....-+ ....+-...++.|+.+++++|++
T Consensus 33 dl~~~ll~~~~~~~-~~v~llG~~~~----~~~~~~~~l~~~yp~l~i~g~~~g~--~~~~~~~~i~~~I~~~~pdiv~v 105 (171)
T cd06533 33 DLMPALLELAAQKG-LRVFLLGAKPE----VLEKAAERLRARYPGLKIVGYHHGY--FGPEEEEEIIERINASGADILFV 105 (171)
T ss_pred HHHHHHHHHHHHcC-CeEEEECCCHH----HHHHHHHHHHHHCCCcEEEEecCCC--CChhhHHHHHHHHHHcCCCEEEE
Confidence 34566666666555 56777765554 345554555544 66666532222 33344445899999999999999
Q ss_pred EeChHHHHHHHHHHHHCCCCCCCeEEEEeC
Q 008205 229 HTYDIWGLEVLNAAKHLRMMESGYVWIVTD 258 (574)
Q Consensus 229 ~~~~~~~~~il~~a~~~gm~~~~~~~i~~~ 258 (574)
......-..++.+..+.. ..-+++..+
T Consensus 106 glG~PkQE~~~~~~~~~l---~~~v~~~vG 132 (171)
T cd06533 106 GLGAPKQELWIARHKDRL---PVPVAIGVG 132 (171)
T ss_pred ECCCCHHHHHHHHHHHHC---CCCEEEEec
Confidence 876655556665555432 233455544
No 269
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=62.65 E-value=54 Score=30.42 Aligned_cols=86 Identities=19% Similarity=0.217 Sum_probs=58.6
Q ss_pred cchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHH-HHHHHhhccCCcc
Q 008205 45 IGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIA-HLVSHIANEFQVP 123 (574)
Q Consensus 45 ~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~-~~va~~~~~~~iP 123 (574)
+|+.-..+++-.+..|| |.-+ +...+ .+-..+...+++..+...||-...+-.+ ..+..+|..+++|
T Consensus 81 iGk~Kv~vm~eri~~In------P~c~--V~~~~----~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~ 148 (263)
T COG1179 81 IGKPKVEVMKERIKQIN------PECE--VTAIN----DFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIP 148 (263)
T ss_pred cccHHHHHHHHHHHhhC------CCce--EeehH----hhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCC
Confidence 46666777888888887 4333 33332 2334455678888889999977666544 4578899999999
Q ss_pred EEecccCCCCcCCCCCCceEEec
Q 008205 124 LLSFAATDPSLSSLQYPFFVRTT 146 (574)
Q Consensus 124 ~Is~~~~~~~ls~~~~~~~~r~~ 146 (574)
+||.++....+. |+-+++.
T Consensus 149 vIss~Gag~k~D----PTri~v~ 167 (263)
T COG1179 149 VISSMGAGGKLD----PTRIQVA 167 (263)
T ss_pred EEeeccccCCCC----CceEEee
Confidence 999876654433 7777764
No 270
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=62.17 E-value=33 Score=32.48 Aligned_cols=78 Identities=10% Similarity=0.028 Sum_probs=51.3
Q ss_pred EEEEEEEc--CCCCcchHHHHHHHHhh-cCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh-HHHHHHHHHH
Q 008205 167 NVIALYVD--DDHGRNGIAALGDKLAE-KRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEVLNAA 242 (574)
Q Consensus 167 ~v~ii~~~--~~~g~~~~~~l~~~~~~-~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~-~~~~~il~~a 242 (574)
+|++|.++ ++|.....+.+.+.+++ .|+.+..... ..+.....+.++.+.+.+.+.+|+.... .....++.++
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~l 77 (272)
T cd06301 1 KIGVSMANFDDNFLTLLRNAMKEHAKVLGGVELQFEDA---KNDVATQLSQVENFIAQGVDAIIVVPVDTAATAPIVKAA 77 (272)
T ss_pred CeeEeecccCCHHHHHHHHHHHHHHHHcCCcEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEecCchhhhHHHHHHH
Confidence 36677754 45666777888888888 8888765322 1234455677777777788888876533 3345667777
Q ss_pred HHCCC
Q 008205 243 KHLRM 247 (574)
Q Consensus 243 ~~~gm 247 (574)
.+.|+
T Consensus 78 ~~~~i 82 (272)
T cd06301 78 NAAGI 82 (272)
T ss_pred HHCCC
Confidence 77654
No 271
>TIGR03850 bind_CPR_0540 carbohydrate ABC transporter substrate-binding protein, CPR_0540 family. Members of this protein are the substrate-binding protein of a predicted carbohydrate transporter operon, together with permease subunits of ABC transporter homology families. This substrate-binding protein frequently co-occurs in genomes with a family of disaccharide phosphorylases, TIGR02336, suggesting that the molecule transported will include beta-D-galactopyranosyl-(1-3)-N-acetyl-D-glucosamine and related carbohydrates. Members of this family are sporadically strain by strain, often in species with a human host association, including Propionibacterium acnes and Clostridium perfringens, and Bacillus cereus.
Probab=62.14 E-value=29 Score=35.78 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEEEe
Q 008205 51 VAIEAAVEDVNSNPAILGGTKLKLTVH 77 (574)
Q Consensus 51 ~a~~~Av~~iN~~~~~l~g~~l~~~~~ 77 (574)
..++-.+++.|+.. |+++|++...
T Consensus 48 ~~~~~~~~~F~~~~---~~i~V~~~~~ 71 (437)
T TIGR03850 48 KMWEEVVEAFEKSH---EGVKVELTVS 71 (437)
T ss_pred HHHHHHHHHHHHHC---CCceEEEEeC
Confidence 45667788888875 5778888654
No 272
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=61.20 E-value=2e+02 Score=30.70 Aligned_cols=128 Identities=10% Similarity=0.093 Sum_probs=77.6
Q ss_pred CHHHHHHHHHH-hHhcCcEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH
Q 008205 82 SRFLGMVEALT-LLENETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV 160 (574)
Q Consensus 82 ~~~~a~~~~~~-l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll 160 (574)
.-..+++.+.+ +...++.+||.-++.. ..+. +...||+|....+ ..+..+++. ..
T Consensus 48 ~~~~~v~~~~~~~~~~~~dviIsrG~ta--~~i~---~~~~iPVv~i~~s------------------~~Dil~al~-~a 103 (538)
T PRK15424 48 GFEKAVTYIRKRLATERCDAIIAAGSNG--AYLK---SRLSVPVILIKPS------------------GFDVMQALA-RA 103 (538)
T ss_pred hHHHHHHHHHHHHhhCCCcEEEECchHH--HHHH---hhCCCCEEEecCC------------------HhHHHHHHH-HH
Confidence 34566677744 5556999999644333 2233 4578999975322 122345553 33
Q ss_pred HHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHH
Q 008205 161 DYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLN 240 (574)
Q Consensus 161 ~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~ 240 (574)
+.++ .++++|...+. ...++.+.+.+ ++.+.... + .+.++....++++|+.+.++||-..- ...
T Consensus 104 ~~~~-~~iavv~~~~~--~~~~~~~~~~l---~~~i~~~~-~---~~~~e~~~~v~~lk~~G~~~vvG~~~------~~~ 167 (538)
T PRK15424 104 RKLT-SSIGVVTYQET--IPALVAFQKTF---NLRIEQRS-Y---VTEEDARGQINELKANGIEAVVGAGL------ITD 167 (538)
T ss_pred HhcC-CcEEEEecCcc--cHHHHHHHHHh---CCceEEEE-e---cCHHHHHHHHHHHHHCCCCEEEcCch------HHH
Confidence 5555 57777764432 12455555555 55555432 3 25778999999999999998875432 346
Q ss_pred HHHHCCCCC
Q 008205 241 AAKHLRMME 249 (574)
Q Consensus 241 ~a~~~gm~~ 249 (574)
.|.+.||.+
T Consensus 168 ~A~~~g~~g 176 (538)
T PRK15424 168 LAEEAGMTG 176 (538)
T ss_pred HHHHhCCce
Confidence 677888754
No 273
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=61.18 E-value=71 Score=32.58 Aligned_cols=78 Identities=10% Similarity=-0.006 Sum_probs=54.3
Q ss_pred cCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe--ChHHHHHHHH
Q 008205 163 FGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT--YDIWGLEVLN 240 (574)
Q Consensus 163 ~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~--~~~~~~~il~ 240 (574)
.+.+++.+|++..-......+.+.+.+++.|+.+.....+.++++.+...+.+..+++.+.++||-.+ +.-++..++.
T Consensus 19 ~~~~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~iA 98 (398)
T cd08178 19 KGKKRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGGGSPMDAAKIMW 98 (398)
T ss_pred cCCCeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 45689998885443333467789999999998765444455556667788888889989999998764 4445554443
No 274
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=61.15 E-value=39 Score=33.78 Aligned_cols=75 Identities=16% Similarity=0.147 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~ 231 (574)
..+.++++.+| +++.+|++...+ ....+.+.+.+++.|+.+.... +..+.+.+.....++..++.+.+.||-.+.
T Consensus 12 ~~l~~~~~~~g-~~~liv~~~~~~-~~~~~~v~~~l~~~~i~~~~~~-~~~~p~~~~v~~~~~~~~~~~~d~IIavGG 86 (349)
T cd08550 12 KEIAAILSTFG-SKVAVVGGKTVL-KKSRPRFEAALAKSIIVVDVIV-FGGECSTEEVVKALCGAEEQEADVIIGVGG 86 (349)
T ss_pred HHHHHHHHHcC-CeEEEEEChHHH-HHHHHHHHHHHHhcCCeeEEEE-cCCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 44667788888 888888754332 2456788888888887554332 343345566777788888888898887643
No 275
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=60.20 E-value=7.9 Score=25.48 Aligned_cols=20 Identities=10% Similarity=-0.026 Sum_probs=10.1
Q ss_pred CchhHHHHHHHHHHHHhhcc
Q 008205 1 MTKIYLLALVVVYNFCFSAG 20 (574)
Q Consensus 1 M~~~~~~~~~~~~~~~~~~~ 20 (574)
|||.+.+++++++++++++|
T Consensus 2 mKk~i~~i~~~l~~~~~l~~ 21 (48)
T PRK10081 2 VKKTIAAIFSVLVLSTVLTA 21 (48)
T ss_pred hHHHHHHHHHHHHHHHHHhh
Confidence 67765444444443444555
No 276
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=60.03 E-value=1.5e+02 Score=27.61 Aligned_cols=115 Identities=13% Similarity=0.119 Sum_probs=62.9
Q ss_pred cchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCCh-HHHHHHHHhhccCCcc
Q 008205 45 IGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFS-VIAHLVSHIANEFQVP 123 (574)
Q Consensus 45 ~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s-~~~~~va~~~~~~~iP 123 (574)
.|+.-..++...+.++| |..+++..... -++. ...+++..+...||....+ ..-..+..+|...++|
T Consensus 62 iG~~Kae~~~~~l~~in------P~~~V~~~~~~--i~~~----~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip 129 (231)
T cd00755 62 VGKPKVEVMAERIRDIN------PECEVDAVEEF--LTPD----NSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIP 129 (231)
T ss_pred CCCcHHHHHHHHHHHHC------CCcEEEEeeee--cCHh----HHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCC
Confidence 45555666677777776 44555544322 2221 2345555567777765444 4455688999999999
Q ss_pred EEecccCCCCcCCCCCCceEEecCChH----HHHHHHHHHHHHcCCe-EEEEEEEcC
Q 008205 124 LLSFAATDPSLSSLQYPFFVRTTQSDL----YQMAAIADIVDYFGWR-NVIALYVDD 175 (574)
Q Consensus 124 ~Is~~~~~~~ls~~~~~~~~r~~ps~~----~~~~ai~~ll~~~~W~-~v~ii~~~~ 175 (574)
+|+..+....+ .|.-+++.--.. .+++.+-.-+++.+-. .+-+||+..
T Consensus 130 ~I~s~g~g~~~----dp~~i~i~di~~t~~~pla~~~R~~Lrk~~~~~~~~~v~S~E 182 (231)
T cd00755 130 VISSMGAGGKL----DPTRIRVADISKTSGDPLARKVRKRLRKRGIFFGVPVVYSTE 182 (231)
T ss_pred EEEEeCCcCCC----CCCeEEEccEeccccCcHHHHHHHHHHHcCCCCCeEEEeCCC
Confidence 99965543332 255555542211 1333444444444433 466666443
No 277
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=59.66 E-value=1.8e+02 Score=28.43 Aligned_cols=135 Identities=16% Similarity=0.200 Sum_probs=72.4
Q ss_pred EEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChHHHH
Q 008205 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSVIAH 111 (574)
Q Consensus 33 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~~~ 111 (574)
-.++.+|-..+ -+.+.+|+.|+.++ +|..+.+...++.-.-.+.++-..+.++. ++.+|+-=.. ...
T Consensus 46 k~~~~lF~~pS---TRTR~SFe~A~~~L-------Gg~~i~l~~~~~~~~kgEs~~Dta~vls~y~~D~iv~R~~--~~~ 113 (305)
T PRK00856 46 KTVANLFFEPS---TRTRLSFELAAKRL-------GADVINFSASTSSVSKGETLADTIRTLSAMGADAIVIRHP--QSG 113 (305)
T ss_pred cEEEEEeccCC---cchHHHHHHHHHHc-------CCcEEEeCCCcccCCCCcCHHHHHHHHHhcCCCEEEEeCC--ChH
Confidence 35888887654 36789999999986 33333333222222222333334444544 3555443111 222
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHH---HHHcC-Ce--EEEEEEEcCCCCcchHHHH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADI---VDYFG-WR--NVIALYVDDDHGRNGIAAL 185 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~l---l~~~~-W~--~v~ii~~~~~~g~~~~~~l 185 (574)
.+..++....||+|.-...+ ...| .++++|+ .+++| ++ +|+++. |..++ .....+
T Consensus 114 ~~~~~a~~~~vPVINa~~g~-----~~HP------------tQ~LaDl~Ti~e~~G~l~g~kv~~vG-D~~~~-~v~~Sl 174 (305)
T PRK00856 114 AARLLAESSDVPVINAGDGS-----HQHP------------TQALLDLLTIREEFGRLEGLKVAIVG-DIKHS-RVARSN 174 (305)
T ss_pred HHHHHHHHCCCCEEECCCCC-----CCCc------------HHHHHHHHHHHHHhCCCCCCEEEEEC-CCCCC-cHHHHH
Confidence 45566667889999842211 1112 2566765 34565 44 666665 22223 345666
Q ss_pred HHHHhhcCcEEEE
Q 008205 186 GDKLAEKRCRLSH 198 (574)
Q Consensus 186 ~~~~~~~g~~v~~ 198 (574)
...+...|..+..
T Consensus 175 ~~~~~~~g~~~~~ 187 (305)
T PRK00856 175 IQALTRLGAEVRL 187 (305)
T ss_pred HHHHHHcCCEEEE
Confidence 6777778876654
No 278
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=59.44 E-value=2.1e+02 Score=30.39 Aligned_cols=129 Identities=7% Similarity=0.040 Sum_probs=78.6
Q ss_pred CCHHHHHHHHHH-hHhcCcEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHH
Q 008205 81 YSRFLGMVEALT-LLENETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADI 159 (574)
Q Consensus 81 ~~~~~a~~~~~~-l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~l 159 (574)
.+-..+++.+.+ +..+++.+||.-+. ++..+. +...||+|....+ ..+..+++. .
T Consensus 37 ~~~~~~~~~a~~~~~~~~~dviIsrG~--ta~~i~---~~~~iPVv~i~~s------------------~~Dil~al~-~ 92 (526)
T TIGR02329 37 LGFEDAVREIRQRLGAERCDVVVAGGS--NGAYLK---SRLSLPVIVIKPT------------------GFDVMQALA-R 92 (526)
T ss_pred ccHHHHHHHHHHHHHhCCCcEEEECch--HHHHHH---HhCCCCEEEecCC------------------hhhHHHHHH-H
Confidence 344567777744 55669999996444 333333 3568999975322 122345543 3
Q ss_pred HHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHH
Q 008205 160 VDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVL 239 (574)
Q Consensus 160 l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il 239 (574)
.+.++ .++++|...+. ...++.+.+.+ ++.+.... + .+..+....++++++.+.++||-.. ...
T Consensus 93 a~~~~-~~ia~vg~~~~--~~~~~~~~~ll---~~~i~~~~-~---~~~~e~~~~~~~l~~~G~~~viG~~------~~~ 156 (526)
T TIGR02329 93 ARRIA-SSIGVVTHQDT--PPALRRFQAAF---NLDIVQRS-Y---VTEEDARSCVNDLRARGIGAVVGAG------LIT 156 (526)
T ss_pred HHhcC-CcEEEEecCcc--cHHHHHHHHHh---CCceEEEE-e---cCHHHHHHHHHHHHHCCCCEEECCh------HHH
Confidence 35555 57777764432 12455555555 45554432 3 3567899999999999999887543 235
Q ss_pred HHHHHCCCCC
Q 008205 240 NAAKHLRMME 249 (574)
Q Consensus 240 ~~a~~~gm~~ 249 (574)
..|+++||.+
T Consensus 157 ~~A~~~gl~~ 166 (526)
T TIGR02329 157 DLAEQAGLHG 166 (526)
T ss_pred HHHHHcCCce
Confidence 6788888753
No 279
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=59.30 E-value=24 Score=31.32 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=24.7
Q ss_pred EEEEcCCChHHHHHHHHhhccCCccEEec
Q 008205 99 VAIIGPQFSVIAHLVSHIANEFQVPLLSF 127 (574)
Q Consensus 99 ~aiiGp~~s~~~~~va~~~~~~~iP~Is~ 127 (574)
+.|+||+.+.-+.....+++.+++|||+.
T Consensus 3 iiilG~pGaGK~T~A~~La~~~~i~hlst 31 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKLGLPHLDT 31 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEcH
Confidence 67999999877777788888899999984
No 280
>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein. A subset of this model in which nearly all members exhibit genomic context with elements of phosphonate metabolism, particularly the C-P lyase system has been built (TIGR03431) as an equivalog. Nevertheless, there are members of this subfamily (TIGR01098) which show up sporadically on a phylogenetic tree that also show phosphonate context and are most likely competent to transport phosphonates.
Probab=58.91 E-value=27 Score=32.82 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=22.3
Q ss_pred CchhHHHHHHHHHHHHhhcccccCCC---CCCCCeEEEEEEeccC
Q 008205 1 MTKIYLLALVVVYNFCFSAGISMNGV---STIPPVLNIGAVFALN 42 (574)
Q Consensus 1 M~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~IG~l~~~~ 42 (574)
||+..+++++++.+ +++++ |+... +..+++|+||..-..+
T Consensus 1 ~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~l~vg~~~~~~ 43 (254)
T TIGR01098 1 MKRLLALLAALLGA-SLAAA-CSKKAAEAAAVPKELNFGILPGEN 43 (254)
T ss_pred ChhHHHHHHHHHHH-HHHhh-cCCchhhhccCCCceEEEECCCCC
Confidence 88876555555443 33333 43211 1356789999885443
No 281
>TIGR02122 TRAP_TAXI TRAP transporter solute receptor, TAXI family. This family is one of at least three major families of extracytoplasmic solute receptor (ESR) for TRAP (Tripartite ATP-independent Periplasmic Transporter) transporters. The others are the DctP (TIGR00787) and SmoM (pfam03480) families. These transporters are secondary (driven by an ion gradient) but composed of three polypeptides, although in some species the 4-TM and 12-TM integral membrane proteins are fused. Substrates for this transporter family are not fully characterized but, besides C4 dicarboxylates, may include mannitol and other compounds.
Probab=58.13 E-value=40 Score=32.95 Aligned_cols=40 Identities=18% Similarity=0.020 Sum_probs=22.6
Q ss_pred CchhHHHHHHHHHHHHh-hcccccCCCCCCCCeEEEEEEeccC
Q 008205 1 MTKIYLLALVVVYNFCF-SAGISMNGVSTIPPVLNIGAVFALN 42 (574)
Q Consensus 1 M~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~IG~l~~~~ 42 (574)
|||++.+++++++.+.+ ++| |+. ....++.++||...+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~l~Ig~~~~~~ 41 (320)
T TIGR02122 1 MKKRLFLLGAALAIVGAALAA-CAG-DGGEPTFVTIGTGGTGG 41 (320)
T ss_pred CchHHHHHHHHHHHHHHHHHh-hcc-CCCCCceEEEEeCCCCC
Confidence 88876444444433333 344 542 23567789999876543
No 282
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=58.07 E-value=48 Score=33.09 Aligned_cols=84 Identities=8% Similarity=0.039 Sum_probs=53.8
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCC--CChhhHHHHHHHhhcCCCeEEEEEeC
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPK--GSRNQIIDTLLTVSSMMSRILILHTY 231 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~--~~~~~~~~~l~~ik~~~~~viil~~~ 231 (574)
.-+.++++.++.+++.+|++.... ....+.+.+.+++.|+.+........+ .+.+...+.++.+++ +.+.||-.+.
T Consensus 12 ~~l~~~~~~~~~~~~livtd~~~~-~~~~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~-~~d~IIaIGG 89 (348)
T cd08175 12 ERLPEILKEFGYKKALIVADENTY-AAAGKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER-DTDLIIAVGS 89 (348)
T ss_pred HHHHHHHHhcCCCcEEEEECCcHH-HHHHHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc-cCCEEEEECC
Confidence 446677888888999999844332 223578888898888865433323322 455667777777776 8888877643
Q ss_pred --hHHHHHHH
Q 008205 232 --DIWGLEVL 239 (574)
Q Consensus 232 --~~~~~~il 239 (574)
.-++..++
T Consensus 90 Gs~~D~aK~v 99 (348)
T cd08175 90 GTINDITKYV 99 (348)
T ss_pred cHHHHHHHHH
Confidence 34444444
No 283
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=57.80 E-value=42 Score=31.31 Aligned_cols=76 Identities=11% Similarity=-0.016 Sum_probs=48.9
Q ss_pred EEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHC
Q 008205 168 VIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHL 245 (574)
Q Consensus 168 v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~ 245 (574)
++++..+ +++.....+.+++.+++.|+.+.... ...+.......++.+...+.+.|++......... ++.+.+.
T Consensus 2 i~~v~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~~-~~~~~~~ 77 (264)
T cd06267 2 IGVIVPDISNPFFAELLRGIEEAAREAGYSVLLCN---SDEDPEKEREALELLLSRRVDGIILAPSRLDDEL-LEELAAL 77 (264)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHcCCEEEEEc---CCCCHHHHHHHHHHHHHcCcCEEEEecCCcchHH-HHHHHHc
Confidence 4566644 55666777888888888888776432 1223344566777777778888888655444444 6667766
Q ss_pred CC
Q 008205 246 RM 247 (574)
Q Consensus 246 gm 247 (574)
|.
T Consensus 78 ~i 79 (264)
T cd06267 78 GI 79 (264)
T ss_pred CC
Confidence 64
No 284
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=57.50 E-value=39 Score=31.46 Aligned_cols=77 Identities=8% Similarity=0.071 Sum_probs=45.0
Q ss_pred EEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHC
Q 008205 168 VIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHL 245 (574)
Q Consensus 168 v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~ 245 (574)
++++.+. ..++......+++.+++.|+.+..... ..+.......++++...+.+.||+..........+..+.+.
T Consensus 2 ig~v~~~~~~~~~~~~~~g~~~~~~~~g~~l~~~~~---~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~~~~l~~~ 78 (264)
T cd01537 2 IGVLVPDLDNPFFAQVLKGIEEAAKAAGYQVLLANS---QNDAEKQLSALENLIARGVDGIIIAPSDLTAPTIVKLARKA 78 (264)
T ss_pred eEEEEcCCCChHHHHHHHHHHHHHHHcCCeEEEEeC---CCCHHHHHHHHHHHHHcCCCEEEEecCCCcchhHHHHhhhc
Confidence 5666654 445566777888888888877654321 12334456667776666777777754332222245555554
Q ss_pred CC
Q 008205 246 RM 247 (574)
Q Consensus 246 gm 247 (574)
+.
T Consensus 79 ~i 80 (264)
T cd01537 79 GI 80 (264)
T ss_pred CC
Confidence 43
No 285
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=56.86 E-value=63 Score=31.00 Aligned_cols=77 Identities=8% Similarity=0.016 Sum_probs=51.6
Q ss_pred EEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe-ChHHHHHHHHHHHH
Q 008205 168 VIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT-YDIWGLEVLNAAKH 244 (574)
Q Consensus 168 v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~-~~~~~~~il~~a~~ 244 (574)
+++|..+ +.+.....+.+.+.+++.|+.+..... ..+.......++.+...+.+.||+.. ..+....+++++.+
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~l~~l~~ 78 (288)
T cd01538 2 IGLSLPTKTEERWIRDRPNFEAALKELGAEVIVQNA---NGDPAKQISQIENMIAKGVDVLVIAPVDGEALASAVEKAAD 78 (288)
T ss_pred eEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEECC---CCCHHHHHHHHHHHHHcCCCEEEEecCChhhHHHHHHHHHH
Confidence 5667654 455667778888889999988765422 12334456777777778888888764 34445677788877
Q ss_pred CCC
Q 008205 245 LRM 247 (574)
Q Consensus 245 ~gm 247 (574)
.|.
T Consensus 79 ~~i 81 (288)
T cd01538 79 AGI 81 (288)
T ss_pred CCC
Confidence 664
No 286
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=56.79 E-value=2.1e+02 Score=28.37 Aligned_cols=131 Identities=18% Similarity=0.168 Sum_probs=70.5
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc--CcEEEEcCCChHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN--ETVAIIGPQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~--~v~aiiGp~~s~~~~ 111 (574)
+++.+|...+ -+.+.+|..|+.++ +|..+.+...++.-.-.+.++-..+.++. .++++=.+. ..
T Consensus 47 ~l~~lF~epS---TRTR~SFe~A~~~L-------Gg~~i~l~~~~s~~~kgEsl~Dtarvls~y~D~Iv~R~~~----~~ 112 (336)
T PRK03515 47 NIALIFEKDS---TRTRCSFEVAAYDQ-------GARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYG----QE 112 (336)
T ss_pred EEEEEecCCC---hhHHHHHHHHHHHc-------CCcEEEeCCccccCCCCCCHHHHHHHHHHhCcEEEEEeCC----hH
Confidence 4788887765 36889999999875 34434432222211111223333333443 333333333 23
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHH---HHHcC---Ce--EEEEEEEcCCCCcchHH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADI---VDYFG---WR--NVIALYVDDDHGRNGIA 183 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~l---l~~~~---W~--~v~ii~~~~~~g~~~~~ 183 (574)
.+..++....+|+|.- .+ +...| .++++|+ .+++| ++ +++++. |..+ ....
T Consensus 113 ~~~~~a~~~~vPVINa-~~-----~~~HP------------tQaLaDl~Ti~e~~g~~~l~g~~ia~vG-D~~~--~v~~ 171 (336)
T PRK03515 113 IVETLAEYAGVPVWNG-LT-----NEFHP------------TQLLADLLTMQEHLPGKAFNEMTLAYAG-DARN--NMGN 171 (336)
T ss_pred HHHHHHHhCCCCEEEC-CC-----CCCCh------------HHHHHHHHHHHHHhCCCCcCCCEEEEeC-CCcC--cHHH
Confidence 4566677778999973 21 11222 2667775 35665 33 566664 2212 3567
Q ss_pred HHHHHHhhcCcEEEEE
Q 008205 184 ALGDKLAEKRCRLSHK 199 (574)
Q Consensus 184 ~l~~~~~~~g~~v~~~ 199 (574)
.+...+...|..+...
T Consensus 172 Sl~~~~~~~g~~v~~~ 187 (336)
T PRK03515 172 SLLEAAALTGLDLRLV 187 (336)
T ss_pred HHHHHHHHcCCEEEEE
Confidence 7777777788876653
No 287
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=56.63 E-value=1.5e+02 Score=26.66 Aligned_cols=102 Identities=8% Similarity=0.010 Sum_probs=59.1
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHH
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDK 188 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~ 188 (574)
....+..+|...+||++.... +. ++ ......+.+.++..+=+.+-.|..-+.........+.+.
T Consensus 46 ~~e~~~~~A~~lgipl~~i~~-~~--~~-------------e~~~~~l~~~l~~~~~~g~~~vv~G~i~sd~~~~~~e~~ 109 (194)
T cd01994 46 NHELLELQAEAMGIPLIRIEI-SG--EE-------------EDEVEDLKELLRKLKEEGVDAVVFGAILSEYQRTRVERV 109 (194)
T ss_pred CHHHHHHHHHHcCCcEEEEeC-CC--Cc-------------hHHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHHH
Confidence 345667888999999876432 11 11 112244444444332112333333443444467788888
Q ss_pred HhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh
Q 008205 189 LAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD 232 (574)
Q Consensus 189 ~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~ 232 (574)
+.+.|+....-- -..+...+++++-+.+-+++|.....
T Consensus 110 ~~~~gl~~~~PL------W~~~~~~ll~e~~~~g~~~~iv~v~~ 147 (194)
T cd01994 110 CERLGLEPLAPL------WGRDQEELLREMIEAGFKAIIIKVAA 147 (194)
T ss_pred HHHcCCEEEecc------cCCCHHHHHHHHHHcCCeEEEEEecc
Confidence 888898764321 22345678888888999988877654
No 288
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=56.18 E-value=1.1e+02 Score=24.98 Aligned_cols=73 Identities=10% Similarity=0.000 Sum_probs=47.8
Q ss_pred EEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh----HHHHHHHHHHHH
Q 008205 169 IALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD----IWGLEVLNAAKH 244 (574)
Q Consensus 169 ~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~----~~~~~il~~a~~ 244 (574)
.+....++....+..-+...++..|+.+.+.... .. ....+..+.+.++++|.+.+.. ..+..++++.++
T Consensus 3 v~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~---vp---~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~ 76 (122)
T cd02071 3 LVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLR---QT---PEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRE 76 (122)
T ss_pred EEEecCCChhHHHHHHHHHHHHHCCCEEEECCCC---CC---HHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHh
Confidence 3344444555566777888889999988754321 12 3456677777899999997643 445666777777
Q ss_pred CCC
Q 008205 245 LRM 247 (574)
Q Consensus 245 ~gm 247 (574)
.+.
T Consensus 77 ~~~ 79 (122)
T cd02071 77 LGA 79 (122)
T ss_pred cCC
Confidence 664
No 289
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=56.02 E-value=1.5e+02 Score=26.27 Aligned_cols=92 Identities=14% Similarity=0.194 Sum_probs=45.3
Q ss_pred CcEEEEcCCChHHHHHHHHhhccCC--ccE-EecccCCCCcCC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEE
Q 008205 97 ETVAIIGPQFSVIAHLVSHIANEFQ--VPL-LSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALY 172 (574)
Q Consensus 97 ~v~aiiGp~~s~~~~~va~~~~~~~--iP~-Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~ 172 (574)
.+++++||+++.-......++..+. .+. ++++...|.-.+ +.-.|.|-. . ..+-++++.-..=...- |
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs---~----~~f~~~~~~~~fie~~~-~ 74 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVS---K----EEFERMIKAGEFIEYGE-Y 74 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE-----H----HHHHHHHHTTHEEEEEE-E
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEe---e----chhhhhhccccEEEEee-e
Confidence 5788999998876666666666542 332 333222333222 233454432 1 22333333222111111 3
Q ss_pred EcCCCCcchHHHHHHHHhhcCcEEE
Q 008205 173 VDDDHGRNGIAALGDKLAEKRCRLS 197 (574)
Q Consensus 173 ~~~~~g~~~~~~l~~~~~~~g~~v~ 197 (574)
.++.||.. ...+.+.+.+...++.
T Consensus 75 ~g~~YGt~-~~~i~~~~~~gk~~il 98 (183)
T PF00625_consen 75 DGNYYGTS-KSAIDKVLEEGKHCIL 98 (183)
T ss_dssp TTEEEEEE-HHHHHHHHHTTTEEEE
T ss_pred cchhhhhc-cchhhHhhhcCCcEEE
Confidence 34456644 4777888877766654
No 290
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=55.93 E-value=12 Score=31.53 Aligned_cols=58 Identities=19% Similarity=0.254 Sum_probs=39.8
Q ss_pred HHHHHhHhc--CcEEEEcCCCh--HHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEec
Q 008205 88 VEALTLLEN--ETVAIIGPQFS--VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTT 146 (574)
Q Consensus 88 ~~~~~l~~~--~v~aiiGp~~s--~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ 146 (574)
+++.+++.+ .++.++|.... .....+..+++.+++|+++.... ...-+...|.++-..
T Consensus 2 ~~~~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~-kg~i~~~hp~~~G~~ 63 (137)
T PF00205_consen 2 DEAADLLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMG-KGVIPEDHPLFLGYL 63 (137)
T ss_dssp HHHHHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGG-TTSSTTTSTTEEEES
T ss_pred HHHHHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCcc-ccccCCCCchhcccC
Confidence 345566654 88999997766 67889999999999999985433 223334557776643
No 291
>PF03830 PTSIIB_sorb: PTS system sorbose subfamily IIB component; InterPro: IPR004720 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families: It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This entry is specific for the IIB components of this family of PTS transporters [].; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 3LFJ_B 1BLE_A 3P3V_B 1NRZ_C 3EYE_A 1VSQ_C 2JZH_A 2JZN_C 2JZO_D.
Probab=55.84 E-value=26 Score=30.04 Aligned_cols=84 Identities=17% Similarity=0.078 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC
Q 008205 152 QMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (574)
Q Consensus 152 ~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~ 231 (574)
.++.+..++++++-+++.++- |........+.+.+.....|+++... +.++....+++-...+.+++++.-+
T Consensus 13 HGQV~~~W~~~~~~~~IiVvd-D~~A~D~~~k~~l~ma~P~gvk~~i~-------sv~~a~~~l~~~~~~~~~v~ii~k~ 84 (151)
T PF03830_consen 13 HGQVATAWVKKLNANRIIVVD-DEVANDPFQKMILKMAAPAGVKLSIF-------SVEEAIEKLKKPEYSKKRVLIIVKS 84 (151)
T ss_dssp CTTHHHHHHHHHTTSEEEEE--HHHHHSHHHHHHHHHTSHTTSEEEEE--------HHHHHHHHCGGGGTTEEEEEEESS
T ss_pred eeeeeEEEhhhcccCEEEEEC-HHHhcCHHHHHHHHHhhcCCCceEEE-------EHHHHHHHHHhcccCCceEEEEECC
Confidence 356788899999999998884 33233346677777777788887642 3445666777776678899999999
Q ss_pred hHHHHHHHHHHH
Q 008205 232 DIWGLEVLNAAK 243 (574)
Q Consensus 232 ~~~~~~il~~a~ 243 (574)
+.++..++++-.
T Consensus 85 ~~d~~~l~~~g~ 96 (151)
T PF03830_consen 85 PEDALRLVEAGV 96 (151)
T ss_dssp HHHHHHHHHTT-
T ss_pred HHHHHHHHhcCC
Confidence 999888776543
No 292
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=55.47 E-value=1.1e+02 Score=24.64 Aligned_cols=83 Identities=13% Similarity=0.065 Sum_probs=42.5
Q ss_pred HHHcCCeEEEEEEEcCCC-CcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHH
Q 008205 160 VDYFGWRNVIALYVDDDH-GRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEV 238 (574)
Q Consensus 160 l~~~~W~~v~ii~~~~~~-g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~i 238 (574)
+...|.+.|.-+-.|.+. +.-....+.+.+++.|+...+.-......+..++....+.+......+.+.|.++..+..+
T Consensus 23 la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~~Pvl~hC~sG~Ra~~l 102 (110)
T PF04273_consen 23 LAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALESLPKPVLAHCRSGTRASAL 102 (110)
T ss_dssp HHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHTTTTSEEEE-SCSHHHHHH
T ss_pred HHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEECCCChhHHHH
Confidence 556899999988877643 4445667888999999876543111112344555555555655554544444455666555
Q ss_pred HHHH
Q 008205 239 LNAA 242 (574)
Q Consensus 239 l~~a 242 (574)
...+
T Consensus 103 ~~l~ 106 (110)
T PF04273_consen 103 WALA 106 (110)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 293
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=55.39 E-value=54 Score=30.78 Aligned_cols=77 Identities=13% Similarity=-0.022 Sum_probs=43.1
Q ss_pred EEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHC
Q 008205 168 VIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHL 245 (574)
Q Consensus 168 v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~ 245 (574)
+++|..+ +.+.....+.+++.+++.|+.+... ....+...-...++.+.+.+.+.||+..........++++.+.
T Consensus 2 I~vi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~---~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~ 78 (268)
T cd06289 2 IGLVINDLTNPFFAELAAGLEEVLEEAGYTVFLA---NSGEDVERQEQLLSTMLEHGVAGIILCPAAGTSPDLLKRLAES 78 (268)
T ss_pred EEEEecCCCcchHHHHHHHHHHHHHHcCCeEEEe---cCCCChHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHhc
Confidence 4455542 4455566677777777778766432 1112233345566667667777777764333233356666665
Q ss_pred CC
Q 008205 246 RM 247 (574)
Q Consensus 246 gm 247 (574)
|.
T Consensus 79 ~i 80 (268)
T cd06289 79 GI 80 (268)
T ss_pred CC
Confidence 54
No 294
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=54.39 E-value=46 Score=31.80 Aligned_cols=79 Identities=13% Similarity=0.034 Sum_probs=47.0
Q ss_pred EEEEEEc---CCCCcchHHHHHHHHhhcCcEEEEEeecCCC-CChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHH
Q 008205 168 VIALYVD---DDHGRNGIAALGDKLAEKRCRLSHKVPLSPK-GSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAK 243 (574)
Q Consensus 168 v~ii~~~---~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~-~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~ 243 (574)
+++|..+ +++....++.+.+.+++.|+.+......... .+.......++.+...+.+.||+..........++.+.
T Consensus 2 Igvi~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIv~~~~~~~~~~~~~l~ 81 (280)
T cd06303 2 IAVIYPGQQISDYWVRNIASFTARLEELNIPYELTQFSSRPGIDHRLQSQQLNEALQSKPDYLIFTLDSLRHRKLIERVL 81 (280)
T ss_pred eeEEecCccHHHHHHHHHHHHHHHHHHcCCcEEEEEeccCcccCHHHHHHHHHHHHHcCCCEEEEcCCchhhHHHHHHHH
Confidence 6677754 3456666778888888888776543211110 12333456677777788888888643332334556655
Q ss_pred HCC
Q 008205 244 HLR 246 (574)
Q Consensus 244 ~~g 246 (574)
+.+
T Consensus 82 ~~~ 84 (280)
T cd06303 82 ASG 84 (280)
T ss_pred hCC
Confidence 544
No 295
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=54.26 E-value=1.9e+02 Score=27.19 Aligned_cols=116 Identities=11% Similarity=0.010 Sum_probs=59.9
Q ss_pred EEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHH
Q 008205 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (574)
Q Consensus 33 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 112 (574)
=+||.+.+...........+++-++++.|... + ..+..........+...+.+.+.++++.++.||+...+. .+..
T Consensus 122 ~~I~~i~~~~~~~~~~r~~gf~~~~~~~g~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~ll~~~pdaI~~~nd~-~A~g 197 (265)
T cd06354 122 GKVGFIGGMDIPLIRRFEAGFEAGVKYVNPGV-P--DIEVLVQYAGSFNDPAKGKEIAQAMYDQGADVIFAAAGG-TGNG 197 (265)
T ss_pred CeEEEEecccChHHHHHHHHHHHHHHHHhccC-C--CceEEEEEcCcccCHHHHHHHHHHHHHCCCcEEEECCCC-CchH
Confidence 35777754322222223368888888765211 0 122222222111224455566777777777888875444 3444
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHH
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMA 154 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ 154 (574)
+...+.+.++.++++... .+.....|.+..+......++.
T Consensus 198 v~~al~~~gisIvGfD~~--~~~~~~~p~lttv~~~~~~~~~ 237 (265)
T cd06354 198 VFQAAKEAGVYAIGVDSD--QYYLAPGVVLTSMVKRVDVAVY 237 (265)
T ss_pred HHHHHHhcCCeEEEecCc--ccccCCCcEEEEEeehhHHHHH
Confidence 455566677777776442 2333334666655544443333
No 296
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=54.08 E-value=1e+02 Score=28.88 Aligned_cols=87 Identities=9% Similarity=-0.060 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhh-cCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEE
Q 008205 151 YQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAE-KRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILH 229 (574)
Q Consensus 151 ~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~-~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~ 229 (574)
++...+.+.....+ .++.++..+.+ .++.+.+.+++ .|+.|..... .+ .+.++....++.|..++++++++.
T Consensus 92 dl~~~ll~~~~~~~-~~v~llG~~~~----v~~~a~~~l~~~y~l~i~g~~~-Gy-f~~~e~~~i~~~I~~s~~dil~Vg 164 (243)
T PRK03692 92 DLWEALMARAGKEG-TPVFLVGGKPE----VLAQTEAKLRTQWNVNIVGSQD-GY-FTPEQRQALFERIHASGAKIVTVA 164 (243)
T ss_pred HHHHHHHHHHHhcC-CeEEEECCCHH----HHHHHHHHHHHHhCCEEEEEeC-CC-CCHHHHHHHHHHHHhcCCCEEEEE
Confidence 35566666666667 67777765543 34444444433 2666654321 21 234455678999999999999998
Q ss_pred eChHHHHHHHHHHHH
Q 008205 230 TYDIWGLEVLNAAKH 244 (574)
Q Consensus 230 ~~~~~~~~il~~a~~ 244 (574)
.....-..++.+..+
T Consensus 165 lG~PkQE~~~~~~~~ 179 (243)
T PRK03692 165 MGSPKQEIFMRDCRL 179 (243)
T ss_pred CCCcHHHHHHHHHHH
Confidence 665444445544433
No 297
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=54.02 E-value=75 Score=31.55 Aligned_cols=82 Identities=7% Similarity=-0.117 Sum_probs=54.6
Q ss_pred CCeEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe-ChHHHHHHHH
Q 008205 164 GWRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT-YDIWGLEVLN 240 (574)
Q Consensus 164 ~W~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~-~~~~~~~il~ 240 (574)
.-.+++++... ++|.....+.+++.+++.|+++... .+...+...-...++.+...+.+.|++.. ++......++
T Consensus 22 ~~~~i~~v~k~~~~pf~~~~~~Gi~~aa~~~G~~v~~~--~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d~~al~~~l~ 99 (336)
T PRK15408 22 AAERIAFIPKLVGVGFFTSGGNGAKEAGKELGVDVTYD--GPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALK 99 (336)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHHHHHHhCCEEEEE--CCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHH
Confidence 34578888743 4566667778888888899887643 22222333334667777778888888864 4455567888
Q ss_pred HHHHCCC
Q 008205 241 AAKHLRM 247 (574)
Q Consensus 241 ~a~~~gm 247 (574)
+|.+.|.
T Consensus 100 ~a~~~gI 106 (336)
T PRK15408 100 RAMQRGV 106 (336)
T ss_pred HHHHCCC
Confidence 8888775
No 298
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=53.93 E-value=61 Score=30.67 Aligned_cols=79 Identities=5% Similarity=-0.100 Sum_probs=50.6
Q ss_pred EEEEEEEc---CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC-hHHHHHHHHHH
Q 008205 167 NVIALYVD---DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNAA 242 (574)
Q Consensus 167 ~v~ii~~~---~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-~~~~~~il~~a 242 (574)
+|+++..+ +.|.....+.+.+.+++.|+.+..... . ..+.......++.+...+.+.||+... .......++.+
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~~g~~v~~~~~-~-~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~l~~~ 78 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDLGVDVEYRGP-E-TFDVADMARLIEAAIAAKPDGIVVTIPDPDALDPAIKRA 78 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHHhCCEEEEECC-C-CCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHHHH
Confidence 36666643 356667778888899999988765321 1 113344556777777778888888643 33345567777
Q ss_pred HHCCC
Q 008205 243 KHLRM 247 (574)
Q Consensus 243 ~~~gm 247 (574)
.+.|+
T Consensus 79 ~~~~i 83 (271)
T cd06312 79 VAAGI 83 (271)
T ss_pred HHCCC
Confidence 77653
No 299
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=53.64 E-value=62 Score=30.24 Aligned_cols=77 Identities=8% Similarity=-0.076 Sum_probs=49.1
Q ss_pred EEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC-hHHHHHHHHHHH
Q 008205 167 NVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNAAK 243 (574)
Q Consensus 167 ~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-~~~~~~il~~a~ 243 (574)
+|++|..+ +.+.....+.+++.+++.|+.+..... ..+.......++++...+.+.||+... .......+..+.
T Consensus 1 ~ig~i~p~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgvi~~~~~~~~~~~~~~~l~ 77 (267)
T cd01536 1 KIGLVVPSLNNPFWQAMNKGAEAAAKELGVELIVLDA---QNDVSKQIQQIEDLIAQGVDGIIISPVDSAALTPALKKAN 77 (267)
T ss_pred CEEEEeccccCHHHHHHHHHHHHHHHhcCceEEEECC---CCCHHHHHHHHHHHHHcCCCEEEEeCCCchhHHHHHHHHH
Confidence 46777754 456667788888889889988765322 123344456777777778888887643 333334566666
Q ss_pred HCC
Q 008205 244 HLR 246 (574)
Q Consensus 244 ~~g 246 (574)
+.+
T Consensus 78 ~~~ 80 (267)
T cd01536 78 AAG 80 (267)
T ss_pred HCC
Confidence 654
No 300
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=53.23 E-value=2e+02 Score=26.97 Aligned_cols=131 Identities=12% Similarity=0.029 Sum_probs=71.0
Q ss_pred EEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHH
Q 008205 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (574)
Q Consensus 33 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 112 (574)
-+||.+.+........-..+|..++++.+. +.+..........+...+.+.+.++++.+..+|+........ .
T Consensus 121 ~~I~~i~~~~~~~~~~R~~Gf~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai~~~~d~~A~-g 193 (260)
T cd06304 121 GKVGFVGGMPIPEVNRFINGFAAGAKSVNP------DITVLVIYTGSFFDPAKGKEAALALIDQGADVIFAAAGGTGP-G 193 (260)
T ss_pred CceEEEeccccHHHHHHHHHHHHHHHHhCC------CcEEEEEEecCccCcHHHHHHHHHHHhCCCCEEEEcCCCCch-H
Confidence 357777543222223346788888876432 222222222222234455566677777667888875544443 3
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEE
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALY 172 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~ 172 (574)
+...+...+|-++++..+ .+.....|-+-.+..+....+...++.+..=.|+..-..+
T Consensus 194 v~~al~~~gv~vigfD~~--~~~~~~~p~lttv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (260)
T cd06304 194 VIQAAKEAGVYAIGVDSD--QSALAPDAVLTSAVKNVDVAVYDAIKAVLDGTWKGGVYWL 251 (260)
T ss_pred HHHHHHHcCCEEEeecCc--hhhhcCccEEEEEEeccHHHHHHHHHHHHcCCCCCcceEe
Confidence 445555566666665332 2222234666666666666777777766666676554444
No 301
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=53.02 E-value=1.6e+02 Score=26.61 Aligned_cols=86 Identities=10% Similarity=-0.045 Sum_probs=53.3
Q ss_pred eEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC----hHHHHHHHHH
Q 008205 166 RNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY----DIWGLEVLNA 241 (574)
Q Consensus 166 ~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~----~~~~~~il~~ 241 (574)
.++.+....++...-+..-+...++..|+++.+- ..+.. ....++.+++.++++|.+.+. ...+..++++
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~L---G~~vp---~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~ 158 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDL---GRDVP---IDTVVEKVKKEKPLMLTGSALMTTTMYGQKDINDK 158 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEEC---CCCCC---HHHHHHHHHHcCCCEEEEccccccCHHHHHHHHHH
Confidence 3555555555566666777777888888887642 22122 345666677778888777643 3556677778
Q ss_pred HHHCCCCCCCeEEEEe
Q 008205 242 AKHLRMMESGYVWIVT 257 (574)
Q Consensus 242 a~~~gm~~~~~~~i~~ 257 (574)
.++.|....-.+|++.
T Consensus 159 l~~~~~~~~v~i~vGG 174 (197)
T TIGR02370 159 LKEEGYRDSVKFMVGG 174 (197)
T ss_pred HHHcCCCCCCEEEEEC
Confidence 8887754333445444
No 302
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=53.02 E-value=59 Score=30.77 Aligned_cols=80 Identities=11% Similarity=0.000 Sum_probs=49.7
Q ss_pred EEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHH
Q 008205 167 NVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKH 244 (574)
Q Consensus 167 ~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~ 244 (574)
++++++.+ +.+.......+++.+++.|+.+.....-. ..+.......++.+...+.+.||+..........+.++.+
T Consensus 1 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~i~~~~~~~vdgiI~~~~~~~~~~~~~~~~~ 79 (268)
T cd06306 1 KLCVLYPHLKDAYWLSVNYGMVEEAKRLGVSLKLLEAGG-YPNLAKQIAQLEDCAAWGADAILLGAVSPDGLNEILQQVA 79 (268)
T ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHHHcCCEEEEecCCC-CCCHHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHHH
Confidence 36677654 45666677888888889998876542111 1123344567777777888888887543332225677777
Q ss_pred CCC
Q 008205 245 LRM 247 (574)
Q Consensus 245 ~gm 247 (574)
.|+
T Consensus 80 ~gi 82 (268)
T cd06306 80 ASI 82 (268)
T ss_pred CCC
Confidence 665
No 303
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=52.13 E-value=2e+02 Score=27.16 Aligned_cols=37 Identities=11% Similarity=0.180 Sum_probs=26.9
Q ss_pred HHhH-hcCcEEEEcCCChHHHHHHHHhhccCCccEEec
Q 008205 91 LTLL-ENETVAIIGPQFSVIAHLVSHIANEFQVPLLSF 127 (574)
Q Consensus 91 ~~l~-~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~ 127 (574)
..+. +.|+.+|+=|-.+..+..+..+-+..++|+|+.
T Consensus 54 ~~L~~~~g~d~ivIaCNTA~a~~~~~l~~~~~iPii~i 91 (251)
T TIGR00067 54 TFLKERHNIKLLVVACNTASALALEDLQRNFDFPVVGV 91 (251)
T ss_pred HHHHHhCCCCEEEEeCchHHHHHHHHHHHHCCCCEEee
Confidence 3444 458888887666666566777778889999983
No 304
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=51.94 E-value=92 Score=29.28 Aligned_cols=75 Identities=12% Similarity=-0.015 Sum_probs=44.4
Q ss_pred EEEEEEc-----CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHH
Q 008205 168 VIALYVD-----DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAA 242 (574)
Q Consensus 168 v~ii~~~-----~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a 242 (574)
|+++..+ +.+.....+.+++.+++.|+.+.... .. .........++.+...+.+.||+...... ..+..+
T Consensus 2 vgv~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~-~~--~~~~~~~~~~~~l~~~~vdgiii~~~~~~--~~~~~l 76 (268)
T cd06277 2 IGLIASKRILNSPAFYSEIYRAIEEEAKKYGYNLILKF-VS--DEDEEEFELPSFLEDGKVDGIILLGGIST--EYIKEI 76 (268)
T ss_pred eEEEEeccccccCCcHHHHHHHHHHHHHHcCCEEEEEe-CC--CChHHHHHHHHHHHHCCCCEEEEeCCCCh--HHHHHH
Confidence 4555544 55666777888888888888775542 22 12233344555566677888887653322 236666
Q ss_pred HHCCC
Q 008205 243 KHLRM 247 (574)
Q Consensus 243 ~~~gm 247 (574)
.+.|.
T Consensus 77 ~~~~i 81 (268)
T cd06277 77 KELGI 81 (268)
T ss_pred hhcCC
Confidence 66553
No 305
>TIGR02136 ptsS_2 phosphate binding protein. Members of this family are phosphate-binding proteins. Most are found in phosphate ABC-transporter operons, but some are found in phosphate regulatory operons. This model separates members of the current family from the phosphate ABC transporter phosphate binding protein described by TIGRFAMs model TIGR00975.
Probab=51.76 E-value=36 Score=32.85 Aligned_cols=64 Identities=17% Similarity=0.153 Sum_probs=33.7
Q ss_pred CchhHHHHHHHHHHHHhhcccccCC------CCCCCCeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEE
Q 008205 1 MTKIYLLALVVVYNFCFSAGISMNG------VSTIPPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKL 74 (574)
Q Consensus 1 M~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~ 74 (574)
|||+.++++-++.+++.++| |+.. .+.....++||+.-... . -+.-.++.+.+.. |+.++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lrig~s~s~~-----~---~lp~~l~~f~~~~---P~i~v~i 68 (287)
T TIGR02136 1 MKKRIFLLIGLAAALLAAAG-CGGAIDSGIPDAKGSSTITIDGSTTVA-----P---LAEAAAEEFQKIH---PGVSVTV 68 (287)
T ss_pred CchhhhHHHHHHHHHHHHhh-ccccccccchhhcccceEEEeccchHH-----H---HHHHHHHHHHhhC---CCceEEE
Confidence 78875444444443444455 5542 22334578999875431 1 1444555655544 5666665
Q ss_pred EE
Q 008205 75 TV 76 (574)
Q Consensus 75 ~~ 76 (574)
..
T Consensus 69 ~~ 70 (287)
T TIGR02136 69 QG 70 (287)
T ss_pred cc
Confidence 44
No 306
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=51.60 E-value=2.4e+02 Score=27.57 Aligned_cols=131 Identities=17% Similarity=0.176 Sum_probs=72.7
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHLV 113 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 113 (574)
.|+.+|...+ -+.+.+|+.|+.++ +|..+.+....+... ...+....+.++..+.+|+-=.... ..+
T Consensus 45 ~l~~lF~epS---TRTR~SFe~A~~~L-------Gg~~i~l~~~~~~~~-~~~~~dt~~vls~~~D~iv~R~~~~--~~~ 111 (311)
T PRK14804 45 SLAMLFQKTS---TRTRVSFEVAMTEM-------GGHGIYLDWMASNFQ-LSDIDLEARYLSRNVSVIMARLKKH--EDL 111 (311)
T ss_pred EEEEEEcCCc---hhHHHHHHHHHHHc-------CCeEEEeCCCccccc-cccHHHHHHHHHhcCCEEEEeCCCh--HHH
Confidence 4777887655 36889999999885 444444432111111 1223333455666666655311111 134
Q ss_pred HHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcC---C--eEEEEEEEcCCCCcchHHHH
Q 008205 114 SHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG---W--RNVIALYVDDDHGRNGIAAL 185 (574)
Q Consensus 114 a~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~---W--~~v~ii~~~~~~g~~~~~~l 185 (574)
..++....||+|.-+ ++ .. +| .++++|++ +++| + .+|+++. + +......+
T Consensus 112 ~~~a~~~~vPVINag-~~-----~~-------HP-----tQaL~Dl~Ti~e~~g~~~l~g~~va~vG-d---~~rv~~Sl 169 (311)
T PRK14804 112 LVMKNGSQVPVINGC-DN-----MF-------HP-----CQSLADIMTIALDSPEIPLNQKQLTYIG-V---HNNVVNSL 169 (311)
T ss_pred HHHHHHCCCCEEECC-CC-----CC-------Ch-----HHHHHHHHHHHHHhCCCCCCCCEEEEEC-C---CCcHHHHH
Confidence 456677789999842 22 11 22 26777763 4565 3 3777775 2 23456666
Q ss_pred HHHHhhcCcEEEEE
Q 008205 186 GDKLAEKRCRLSHK 199 (574)
Q Consensus 186 ~~~~~~~g~~v~~~ 199 (574)
...+...|..+...
T Consensus 170 ~~~~~~~G~~v~~~ 183 (311)
T PRK14804 170 IGITAALGIHLTLV 183 (311)
T ss_pred HHHHHHcCCEEEEE
Confidence 67777778776543
No 307
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=51.57 E-value=2.4e+02 Score=27.48 Aligned_cols=130 Identities=18% Similarity=0.184 Sum_probs=72.2
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEE--cCCChHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAII--GPQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii--Gp~~s~~~~ 111 (574)
.++.+|...+ -+.+.+|+.|+.++ +|..+.+...++.-.--+.++-..+.++.-+.+|+ .+.. .
T Consensus 40 ~~~~lF~epS---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~Dt~~vls~y~D~iviR~~~~----~ 105 (302)
T PRK14805 40 SVVMLFEKPS---LRTRVSFDIGINKL-------GGHCLYLDQQNGALGKRESVADFAANLSCWADAIVARVFSH----S 105 (302)
T ss_pred EEEEEecCCC---chHHHHHHHHHHHc-------CCcEEECCCCcCcCCCCcCHHHHHHHHHHhCCEEEEeCCCh----h
Confidence 4888887765 36889999999886 34444432222221112223333344444344444 3322 2
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcCC---eEEEEEEEcCCCCcchHHHH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFGW---RNVIALYVDDDHGRNGIAAL 185 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~W---~~v~ii~~~~~~g~~~~~~l 185 (574)
.+..++....+|+|.-. ++ .. +| .++++|++ +++|- .+|+++.+ +......+
T Consensus 106 ~~~~~a~~~~vPVINa~-~~-----~~-------HP-----tQaL~Dl~Ti~e~~g~l~g~kva~vGD----~~~v~~S~ 163 (302)
T PRK14805 106 TIEQLAEHGSVPVINAL-CD-----LY-------HP-----CQALADFLTLAEQFGDVSKVKLAYVGD----GNNVTHSL 163 (302)
T ss_pred HHHHHHHhCCCCEEECC-CC-----CC-------Ch-----HHHHHHHHHHHHHhCCcCCcEEEEEcC----CCccHHHH
Confidence 34566667789999842 21 12 22 26777763 45542 47877753 22356677
Q ss_pred HHHHhhcCcEEEEE
Q 008205 186 GDKLAEKRCRLSHK 199 (574)
Q Consensus 186 ~~~~~~~g~~v~~~ 199 (574)
...+...|..+...
T Consensus 164 ~~~~~~~g~~v~~~ 177 (302)
T PRK14805 164 MYGAAILGATMTVI 177 (302)
T ss_pred HHHHHHcCCEEEEE
Confidence 77777788877654
No 308
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=51.47 E-value=71 Score=29.89 Aligned_cols=77 Identities=13% Similarity=0.017 Sum_probs=46.6
Q ss_pred EEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHC
Q 008205 168 VIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHL 245 (574)
Q Consensus 168 v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~ 245 (574)
++++..+ +++.....+.+.+.+++.|+.+..... ..+.......++.+...+.+.||+.........++..+.+.
T Consensus 2 igvv~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~ 78 (266)
T cd06282 2 VGVVLPSLANPVFAECVQGIQEEARAAGYSLLLATT---DYDAEREADAVETLLRQRVDGLILTVADAATSPALDLLDAE 78 (266)
T ss_pred eEEEeCCCCcchHHHHHHHHHHHHHHCCCEEEEeeC---CCCHHHHHHHHHHHHhcCCCEEEEecCCCCchHHHHHHhhC
Confidence 4555543 455566778888888888887765321 12334445667777667788888753222223466777776
Q ss_pred CC
Q 008205 246 RM 247 (574)
Q Consensus 246 gm 247 (574)
|.
T Consensus 79 ~i 80 (266)
T cd06282 79 RV 80 (266)
T ss_pred CC
Confidence 64
No 309
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=51.46 E-value=70 Score=30.05 Aligned_cols=77 Identities=9% Similarity=0.044 Sum_probs=48.0
Q ss_pred EEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC-hHHHHHHHHHHHH
Q 008205 168 VIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNAAKH 244 (574)
Q Consensus 168 v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-~~~~~~il~~a~~ 244 (574)
|+++..+ +.|.....+.+.+.+++.|+.+.... . ..+.......++.+...+.+.||+... .......+.++.+
T Consensus 2 i~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~i~~--~-~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~ 78 (267)
T cd06322 2 IGASLLTQQHPFYIELANAMKEEAKKQKVNLIVSI--A-NQDLNKQLSDVEDFITKKVDAIVLSPVDSKGIRAAIAKAKK 78 (267)
T ss_pred eeEeecCcccHHHHHHHHHHHHHHHhcCCEEEEec--C-CCCHHHHHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHHHH
Confidence 4555544 45666677888888888888775432 1 123334556677777778888888543 3333556677777
Q ss_pred CCC
Q 008205 245 LRM 247 (574)
Q Consensus 245 ~gm 247 (574)
.|+
T Consensus 79 ~~i 81 (267)
T cd06322 79 AGI 81 (267)
T ss_pred CCC
Confidence 664
No 310
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=51.38 E-value=63 Score=30.70 Aligned_cols=77 Identities=12% Similarity=-0.042 Sum_probs=47.3
Q ss_pred EEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe-ChHHHHHHHHHHHH
Q 008205 168 VIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT-YDIWGLEVLNAAKH 244 (574)
Q Consensus 168 v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~-~~~~~~~il~~a~~ 244 (574)
++++..+ +.|.......+.+.+++.|+.+..... ..+.......++.+...+.+.||+.. ..+.....++.+.+
T Consensus 2 igv~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~~~~---~~~~~~~~~~i~~~~~~~~Dgiii~~~~~~~~~~~i~~~~~ 78 (282)
T cd06318 2 IGFSQYTLNSPFFAALTEAAKAHAKALGYELISTDA---QGDLTKQIADVEDLLTRGVNVLIINPVDPEGLVPAVAAAKA 78 (282)
T ss_pred eeEEeccccCHHHHHHHHHHHHHHHHcCCEEEEEcC---CCCHHHHHHHHHHHHHcCCCEEEEecCCccchHHHHHHHHH
Confidence 4555543 455666777888888888887754321 12333445677777778888888763 33333456677766
Q ss_pred CCC
Q 008205 245 LRM 247 (574)
Q Consensus 245 ~gm 247 (574)
.|.
T Consensus 79 ~~i 81 (282)
T cd06318 79 AGV 81 (282)
T ss_pred CCC
Confidence 554
No 311
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=51.33 E-value=45 Score=33.12 Aligned_cols=84 Identities=8% Similarity=-0.029 Sum_probs=54.4
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC--
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-- 231 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-- 231 (574)
..+.+.++.++.+++.+|++...+-. ..+.+.+.+++.++.+ + ..+..+.+.+......+..++.+.+.||-.+.
T Consensus 12 ~~l~~~l~~~g~~~~livt~~~~~~~-~~~~v~~~l~~~~~~~-~-~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs 88 (337)
T cd08177 12 AALAAELERLGASRALVLTTPSLATK-LAERVASALGDRVAGT-F-DGAVMHTPVEVTEAAVAAAREAGADGIVAIGGGS 88 (337)
T ss_pred HHHHHHHHHcCCCeEEEEcChHHHHH-HHHHHHHHhccCCcEE-e-CCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcH
Confidence 55677889999999999985543322 5567777777665432 2 22333455667778888888888898887643
Q ss_pred hHHHHHHHH
Q 008205 232 DIWGLEVLN 240 (574)
Q Consensus 232 ~~~~~~il~ 240 (574)
.-++..++.
T Consensus 89 ~iD~aK~ia 97 (337)
T cd08177 89 TIDLAKAIA 97 (337)
T ss_pred HHHHHHHHH
Confidence 344444443
No 312
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=51.22 E-value=1.1e+02 Score=30.18 Aligned_cols=84 Identities=8% Similarity=0.029 Sum_probs=52.4
Q ss_pred HHHHHHHHHcCC-eEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEe-ecCCCCChhhHHHHHHHhhcCCCeEEEEEeC
Q 008205 154 AAIADIVDYFGW-RNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKV-PLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (574)
Q Consensus 154 ~ai~~ll~~~~W-~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~-~~~~~~~~~~~~~~l~~ik~~~~~viil~~~ 231 (574)
..+.++++.++. +++.+|++...... ..+.+.+.+++.|+.+.... ....+++.+......+.+++ +.+.||..+.
T Consensus 12 ~~l~~~~~~~~~~~kvlivtd~~~~~~-~~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~-~~d~IIaiGG 89 (332)
T cd08549 12 NDIGPIINKIGVNSKIMIVCGNNTYKV-AGKEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK-DTEFLLGIGS 89 (332)
T ss_pred HHHHHHHHHcCCCCcEEEEECCcHHHH-HHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc-CCCEEEEECC
Confidence 445667777876 78888886554322 34788888888887554321 12222355667777788877 7887777643
Q ss_pred --hHHHHHHH
Q 008205 232 --DIWGLEVL 239 (574)
Q Consensus 232 --~~~~~~il 239 (574)
..++..++
T Consensus 90 Gsv~D~aK~i 99 (332)
T cd08549 90 GTIIDLVKFV 99 (332)
T ss_pred cHHHHHHHHH
Confidence 34444444
No 313
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=50.14 E-value=88 Score=29.29 Aligned_cols=76 Identities=11% Similarity=-0.068 Sum_probs=47.3
Q ss_pred EEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHC
Q 008205 168 VIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHL 245 (574)
Q Consensus 168 v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~ 245 (574)
|+++..+ +++.....+.+.+.+++.|+.+..... ..+.......++.+...+.+.||+....... ..++++.+.
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~~~l~~~ 77 (265)
T cd06299 2 IGVIVPDIRNPYFASLATAIQDAASAAGYSTIIGNS---DENPETENRYLDNLLSQRVDGIIVVPHEQSA-EQLEDLLKR 77 (265)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHHhcCCCEEEEcCCCCCh-HHHHHHHhC
Confidence 5566643 456666777888888888887765422 1233445567777777788888876433222 346777776
Q ss_pred CC
Q 008205 246 RM 247 (574)
Q Consensus 246 gm 247 (574)
|.
T Consensus 78 ~i 79 (265)
T cd06299 78 GI 79 (265)
T ss_pred CC
Confidence 53
No 314
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=49.30 E-value=1.3e+02 Score=29.92 Aligned_cols=81 Identities=7% Similarity=-0.016 Sum_probs=52.8
Q ss_pred HHHHHHH-HcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC--
Q 008205 155 AIADIVD-YFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-- 231 (574)
Q Consensus 155 ai~~ll~-~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-- 231 (574)
-+.++++ .++.+++.+|++...+ ....+.+.+.+++.| .+... +..+.+.+.+...++.+++.+.+.||..+.
T Consensus 14 ~l~~~l~~~~~~~~~liv~d~~~~-~~~~~~v~~~l~~~~-~~~~~--~~~~~~~~~v~~~~~~~~~~~~d~iIaiGGGs 89 (339)
T cd08173 14 KIPNVLRDLLLGGRVLVVTGPTTK-SIAGKKVEALLEDEG-EVDVV--IVEDATYEEVEKVESSARDIGADFVIGVGGGR 89 (339)
T ss_pred HHHHHHHHhCCCCeEEEEECCchH-HHHHHHHHHHHHhcC-CeEEE--EeCCCCHHHHHHHHHHhhhcCCCEEEEeCCch
Confidence 4556676 4677999999854432 345677888888777 44322 233456677888888888888898887643
Q ss_pred hHHHHHHH
Q 008205 232 DIWGLEVL 239 (574)
Q Consensus 232 ~~~~~~il 239 (574)
.-++..++
T Consensus 90 ~~D~aK~~ 97 (339)
T cd08173 90 VIDVAKVA 97 (339)
T ss_pred HHHHHHHH
Confidence 34444444
No 315
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=49.00 E-value=2.2e+02 Score=28.59 Aligned_cols=97 Identities=7% Similarity=-0.096 Sum_probs=58.1
Q ss_pred CceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEe--ecCCCCChhhHHHHHHH
Q 008205 140 PFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKV--PLSPKGSRNQIIDTLLT 217 (574)
Q Consensus 140 ~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~--~~~~~~~~~~~~~~l~~ 217 (574)
|+-+...+.. ...+.++++.++++++.+|++... .....+.+.+.++..|+.+.... ....+.+.+.+.+.++.
T Consensus 9 ~~~v~~G~g~---~~~l~~~l~~~~~~~~livtd~~~-~~~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~ 84 (358)
T PRK00002 9 SYPIIIGKGL---LSELGELLAPLKGKKVAIVTDETV-APLYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDA 84 (358)
T ss_pred CCcEEEeCCh---HHHHHHHHHhcCCCeEEEEECCch-HHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHH
Confidence 4444454432 245666777778899999995543 33467788888888887654321 12222355667777777
Q ss_pred hhcCCC---eEEEEEeC--hHHHHHHHH
Q 008205 218 VSSMMS---RILILHTY--DIWGLEVLN 240 (574)
Q Consensus 218 ik~~~~---~viil~~~--~~~~~~il~ 240 (574)
+++.+. +.||..+. .-++..++.
T Consensus 85 ~~~~~~~r~d~IIavGGGsv~D~aK~iA 112 (358)
T PRK00002 85 LLEAGLDRSDTLIALGGGVIGDLAGFAA 112 (358)
T ss_pred HHHcCCCCCCEEEEEcCcHHHHHHHHHH
Confidence 776544 76766543 344444443
No 316
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=48.96 E-value=2.7e+02 Score=27.39 Aligned_cols=124 Identities=9% Similarity=-0.008 Sum_probs=65.1
Q ss_pred CCeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEec-CCCCHHHHHHHHHHhHhc----CcEEEEc
Q 008205 30 PPVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHD-TNYSRFLGMVEALTLLEN----ETVAIIG 103 (574)
Q Consensus 30 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d-~~~~~~~a~~~~~~l~~~----~v~aiiG 103 (574)
.+.+.|+.+.... ......-..+++-|+++.+ .++.....+ ...+...+.+.+.+++++ .+.+|+.
T Consensus 160 ~g~~~i~~i~g~~~~~~~~~R~~G~~~al~~~g--------~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ai~~ 231 (330)
T PRK15395 160 DGKIQYVLLKGEPGHPDAEARTTYVIKELNDKG--------IKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIA 231 (330)
T ss_pred CCceEEEEEecCCCCchHHHHHHHHHHHHHhcC--------CCeeeeecccCCcCHHHHHHHHHHHHhhCcCCCeeEEEE
Confidence 3567777664332 2222345678888877542 222222222 233555666777787764 4789997
Q ss_pred CCChHHHHHHHHhhccC---CccEEecccCCCCcCC-CCCCceEEecCChHHHHHHHHHHHHH
Q 008205 104 PQFSVIAHLVSHIANEF---QVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDY 162 (574)
Q Consensus 104 p~~s~~~~~va~~~~~~---~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~ll~~ 162 (574)
..+... ..+.+.+.+. .+|++++......... ..-+.+..+..+...++...++++..
T Consensus 232 ~~d~~A-~gvl~al~~~Gl~~vpVvg~D~~~~~~~~~~~g~~~ttv~~~~~~~G~~a~~~l~~ 293 (330)
T PRK15395 232 NNDAMA-MGAVEALKAHNKSSIPVFGVDALPEALALVKSGAMAGTVLNDANNQAKATFDLAKN 293 (330)
T ss_pred CCchHH-HHHHHHHHhcCCCCCeEEeeCCCHHHHHHHHhCCceEEEecCHHHHHHHHHHHHHH
Confidence 655443 3334444444 5688876433211110 11133555666666777777776543
No 317
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=48.66 E-value=39 Score=25.08 Aligned_cols=41 Identities=15% Similarity=0.209 Sum_probs=32.9
Q ss_pred HHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEE
Q 008205 156 IADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLS 197 (574)
Q Consensus 156 i~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~ 197 (574)
..++++.+ -+++.+.+++|..|....+.+.+.+.+.|..+.
T Consensus 35 ~~~~L~~~-~~~vii~~D~D~aG~~a~~~~~~~l~~~g~~~~ 75 (79)
T cd03364 35 QAELLKRL-AKEVILAFDGDEAGQKAALRALELLLKLGLNVR 75 (79)
T ss_pred HHHHHHhc-CCeEEEEECCCHHHHHHHHHHHHHHHHCCCeEE
Confidence 35555555 588999999998899999999999999887654
No 318
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=48.34 E-value=1.7e+02 Score=33.44 Aligned_cols=76 Identities=9% Similarity=0.013 Sum_probs=52.5
Q ss_pred CCeEEEEEEEcCCCCcchHHHHHHHHh--hcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC--hHHHHHHH
Q 008205 164 GWRNVIALYVDDDHGRNGIAALGDKLA--EKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY--DIWGLEVL 239 (574)
Q Consensus 164 ~W~~v~ii~~~~~~g~~~~~~l~~~~~--~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~--~~~~~~il 239 (574)
+.+++.+|++.........+.+.+.++ ..++.+.....+.++.+.+.+.+.+..+++.+++.||-.+. .-++..++
T Consensus 479 ~~~~~lvVtd~~~~~~g~~~~v~~~L~~~~~~i~~~~~~~v~~np~~~~v~~~~~~~~~~~~D~IIaiGGGSviD~AK~i 558 (862)
T PRK13805 479 GKKRAFIVTDRFMVELGYVDKVTDVLKKRENGVEYEVFSEVEPDPTLSTVRKGAELMRSFKPDTIIALGGGSPMDAAKIM 558 (862)
T ss_pred CCCEEEEEECcchhhcchHHHHHHHHhcccCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHH
Confidence 668999998554433346778888888 67776654444555566677888888899999998887643 34444444
No 319
>PRK10386 curli assembly protein CsgE; Provisional
Probab=48.17 E-value=69 Score=26.53 Aligned_cols=51 Identities=18% Similarity=0.154 Sum_probs=27.4
Q ss_pred CchhHHHHHHHHHHHHhhcccccCCCCCCCCeEEEEE-EeccC-CccchhHHHHHHHHHH
Q 008205 1 MTKIYLLALVVVYNFCFSAGISMNGVSTIPPVLNIGA-VFALN-STIGKVAKVAIEAAVE 58 (574)
Q Consensus 1 M~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~IG~-l~~~~-~~~g~~~~~a~~~Av~ 58 (574)
|||.+...+++++++ ++| + ......+-|.+ +.+.+ +..|+.....|-...+
T Consensus 1 ~~r~~~~~l~~~~l~--~~~-~----~~a~~eiEi~GLIiD~T~Tr~G~DFY~~Fs~~~~ 53 (130)
T PRK10386 1 MKRYLRWIVAAELLF--AAG-N----LHAAVEVEVPGLLTDHTVSSIGHDFYRAFSDKWE 53 (130)
T ss_pred ChhHHHHHHHHHHHH--hCc-c----ccccccccccceEeccccccccHhHHHHHHHHHh
Confidence 899765555544422 222 1 12225566654 45555 6678777766655554
No 320
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=48.11 E-value=80 Score=29.08 Aligned_cols=78 Identities=12% Similarity=0.036 Sum_probs=48.8
Q ss_pred EEEEEEEcC---CCCcchHHHHHHHHhh--cCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHH
Q 008205 167 NVIALYVDD---DHGRNGIAALGDKLAE--KRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNA 241 (574)
Q Consensus 167 ~v~ii~~~~---~~g~~~~~~l~~~~~~--~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~ 241 (574)
+|+++.+.. .++....+.+++.+.+ .++++.... ...+..+....++++...+.+.|++.........+...
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~~~~ 77 (269)
T cd01391 1 KIGVLLPLSGSAPFGAQLLAGIELAAEEIGRGLEVILAD---SQSDPERALEALRDLIQQGVDGIIGPPSSSSALAVVEL 77 (269)
T ss_pred CceEEeecCCCcHHHHHHHHHHHHHHHHhCCceEEEEec---CCCCHHHHHHHHHHHHHcCCCEEEecCCCHHHHHHHHH
Confidence 356676543 4556667778888888 666665432 12233456677777777788888877555444446667
Q ss_pred HHHCCC
Q 008205 242 AKHLRM 247 (574)
Q Consensus 242 a~~~gm 247 (574)
+.+.+.
T Consensus 78 ~~~~~i 83 (269)
T cd01391 78 AAAAGI 83 (269)
T ss_pred HHHcCC
Confidence 776654
No 321
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=48.06 E-value=30 Score=21.30 Aligned_cols=9 Identities=22% Similarity=0.265 Sum_probs=6.3
Q ss_pred CCCeEEEEE
Q 008205 29 IPPVLNIGA 37 (574)
Q Consensus 29 ~~~~i~IG~ 37 (574)
.++++.|.+
T Consensus 22 ~pG~ViING 30 (36)
T PF08194_consen 22 TPGNVIING 30 (36)
T ss_pred CCCeEEECc
Confidence 478888754
No 322
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=47.90 E-value=50 Score=32.71 Aligned_cols=78 Identities=9% Similarity=0.018 Sum_probs=49.7
Q ss_pred HHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe--ChHHHHHH
Q 008205 161 DYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT--YDIWGLEV 238 (574)
Q Consensus 161 ~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~--~~~~~~~i 238 (574)
..++.+++.+|++..-......+.+.+.+++. +.+.....+..+++.+...+.++..++.+.+.||-.+ +.-++...
T Consensus 18 ~~~~~~~~lvv~~~~~~~~g~~~~v~~~l~~~-~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~aKa 96 (332)
T cd08180 18 KELKNKRVLIVTDPFMVKSGMLDKVTDHLDSS-IEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGGGSAIDAAKA 96 (332)
T ss_pred HHhCCCeEEEEeCchhhhCccHHHHHHHHHhc-CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECCchHHHHHHH
Confidence 44556899999854433233567788888766 5443333344445566777888888888999888764 33444443
Q ss_pred H
Q 008205 239 L 239 (574)
Q Consensus 239 l 239 (574)
+
T Consensus 97 ~ 97 (332)
T cd08180 97 I 97 (332)
T ss_pred H
Confidence 3
No 323
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=47.76 E-value=1.6e+02 Score=28.47 Aligned_cols=113 Identities=13% Similarity=0.056 Sum_probs=54.5
Q ss_pred EEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHH---
Q 008205 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI--- 109 (574)
Q Consensus 33 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~--- 109 (574)
=+||+++..+...+......++.+.+. .|+++.....++..+...+ .+.+...+.+++-+.+...
T Consensus 132 k~igvl~~~~~~~~~~~~~~~~~~a~~--------~g~~l~~~~v~~~~~~~~~----~~~l~~~~da~~~~~~~~~~~~ 199 (294)
T PF04392_consen 132 KRIGVLYDPSEPNSVAQIEQLRKAAKK--------LGIELVEIPVPSSEDLEQA----LEALAEKVDALYLLPDNLVDSN 199 (294)
T ss_dssp -EEEEEEETT-HHHHHHHHHHHHHHHH--------TT-EEEEEEESSGGGHHHH----HHHHCTT-SEEEE-S-HHHHHT
T ss_pred CEEEEEecCCCccHHHHHHHHHHHHHH--------cCCEEEEEecCcHhHHHHH----HHHhhccCCEEEEECCcchHhH
Confidence 468888876542222222233322222 1456655555443343332 3334455555555544432
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDY 162 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~ 162 (574)
...+...+...++|+++.. +.... .--+....++...+++..++++.+
T Consensus 200 ~~~i~~~~~~~~iPv~~~~--~~~v~---~Gal~~~~~~~~~~G~~Aa~~a~~ 247 (294)
T PF04392_consen 200 FEAILQLANEAKIPVFGSS--DFYVK---AGALGGYSVDYYEQGRQAAEMAVR 247 (294)
T ss_dssp HHHHHHHCCCTT--EEESS--HHHHC---TT-SEEEE--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEECC--HHHhc---CCcEEEEccCHHHHHHHHHHHHHH
Confidence 2346677889999999752 11121 134577778888888888887654
No 324
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=47.49 E-value=1.5e+02 Score=23.93 Aligned_cols=68 Identities=12% Similarity=0.017 Sum_probs=42.8
Q ss_pred EcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC-h---HHHHHHHHHHHHCC
Q 008205 173 VDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-D---IWGLEVLNAAKHLR 246 (574)
Q Consensus 173 ~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-~---~~~~~il~~a~~~g 246 (574)
...+....++.-+...++..|+++.+. ..... ...+++.+.+.++++|.+.+. . ..+..++++.++.+
T Consensus 7 ~~~e~H~lG~~~~~~~l~~~G~~V~~l---g~~~~---~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~ 78 (119)
T cd02067 7 VGGDGHDIGKNIVARALRDAGFEVIDL---GVDVP---PEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAG 78 (119)
T ss_pred eCCchhhHHHHHHHHHHHHCCCEEEEC---CCCCC---HHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcC
Confidence 344445556777888888889887542 21122 345666677778888888764 2 44556667777654
No 325
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=47.43 E-value=76 Score=30.29 Aligned_cols=76 Identities=8% Similarity=0.048 Sum_probs=49.3
Q ss_pred EEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC-hHHHHHHHHHHHH
Q 008205 168 VIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNAAKH 244 (574)
Q Consensus 168 v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-~~~~~~il~~a~~ 244 (574)
|++|..+ +++.....+.+.+.+++.|+.+... ... +.......++.+...+.+.||+... ......+++++.+
T Consensus 2 Ig~v~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~---~~~-~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~~~~~~~ 77 (289)
T cd01540 2 IGFIVKQPEEPWFQTEWKFAKKAAKEKGFTVVKI---DVP-DGEKVLSAIDNLGAQGAKGFVICVPDVKLGPAIVAKAKA 77 (289)
T ss_pred eeeecCCCCCcHHHHHHHHHHHHHHHcCCEEEEc---cCC-CHHHHHHHHHHHHHcCCCEEEEccCchhhhHHHHHHHHh
Confidence 5666643 3456666778888898899877542 221 3334456677777788888888643 3345567788877
Q ss_pred CCC
Q 008205 245 LRM 247 (574)
Q Consensus 245 ~gm 247 (574)
.|.
T Consensus 78 ~~i 80 (289)
T cd01540 78 YNM 80 (289)
T ss_pred CCC
Confidence 664
No 326
>PRK00865 glutamate racemase; Provisional
Probab=47.25 E-value=2.6e+02 Score=26.56 Aligned_cols=35 Identities=14% Similarity=0.257 Sum_probs=24.0
Q ss_pred HhHhcCcEEEEcCCChHHHHHHHHhhccCCccEEe
Q 008205 92 TLLENETVAIIGPQFSVIAHLVSHIANEFQVPLLS 126 (574)
Q Consensus 92 ~l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is 126 (574)
.+.+.|+.+|+=+-.+.++..+..+-+..++|+|.
T Consensus 62 ~L~~~g~d~iVIaCNTa~~~~l~~lr~~~~iPvig 96 (261)
T PRK00865 62 FLLEYGVKMLVIACNTASAVALPDLRERYDIPVVG 96 (261)
T ss_pred HHHhCCCCEEEEeCchHHHHHHHHHHHhCCCCEEe
Confidence 34445888887665555555556666777999997
No 327
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=47.13 E-value=2.2e+02 Score=25.76 Aligned_cols=123 Identities=11% Similarity=0.086 Sum_probs=68.1
Q ss_pred HhHhcCcEEEEcCCChHHHHHHHHhh-ccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEE
Q 008205 92 TLLENETVAIIGPQFSVIAHLVSHIA-NEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIA 170 (574)
Q Consensus 92 ~l~~~~v~aiiGp~~s~~~~~va~~~-~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~i 170 (574)
++...|+.+|+-+ |......+..+- ...++|+++.. .+.+.-+.. +-+++++
T Consensus 60 ~l~~~g~d~i~i~-C~s~~~~~~~~~~~~~~iPv~~~~-------------------------~a~~~~~~~-~~~ri~v 112 (216)
T PF01177_consen 60 KLEKAGVDAIVIA-CNSAHPFVDELRKERVGIPVVGIV-------------------------EAALEAAKA-GGKRIGV 112 (216)
T ss_dssp HHHHTTESEEEES-SHHHHHHHHHHHHHHHSSEEEESH-------------------------HHHHHHHHH-TSSEEEE
T ss_pred HHHhCCCCEEEEc-CCchhhhHHHHhhhcCceEEEecc-------------------------HHHHHHHHh-cCCEEEE
Confidence 3334588888753 333333444444 66788987631 222333344 8899999
Q ss_pred EEEcCCCCcchHHHHHHHHhhc-Cc--EEEEEe--ecC----CC-CChh---hHHHHHHHh-hcCCCeEEEEEeChHHHH
Q 008205 171 LYVDDDHGRNGIAALGDKLAEK-RC--RLSHKV--PLS----PK-GSRN---QIIDTLLTV-SSMMSRILILHTYDIWGL 236 (574)
Q Consensus 171 i~~~~~~g~~~~~~l~~~~~~~-g~--~v~~~~--~~~----~~-~~~~---~~~~~l~~i-k~~~~~viil~~~~~~~~ 236 (574)
+.... ......+.+.+++. |+ .+.... .+. .. .+.. .+...++++ +..++++|++.|..-...
T Consensus 113 l~t~~---~~~~~~~~~~~~~~~gi~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~d~iiLgCt~l~~~ 189 (216)
T PF01177_consen 113 LTTYT---TEKSPLYEEFIEEAAGIDDEVVAGIHNAIYDVIELGDIPPEQIEILAEAARELIKEDGADAIILGCTHLPLL 189 (216)
T ss_dssp EESHH---HHHHTHHHHHHHHCTTEECEEEEEEEEEHTHHHHTTCTTHHHHHHHHHHHHHHHHCTTSSEEEEESTTGGGG
T ss_pred EecCc---ccchHHHHHHHHHhcCCcHHHHHHHHhhcHHHHhhhcCCHHHHHHHHHHHHHHhccCCCCEEEECCCchHHH
Confidence 98532 23456667777777 76 443321 010 11 1222 344444444 478999999998765433
Q ss_pred -HHHHHHHH
Q 008205 237 -EVLNAAKH 244 (574)
Q Consensus 237 -~il~~a~~ 244 (574)
..+..+.+
T Consensus 190 ~~~~~~l~~ 198 (216)
T PF01177_consen 190 LGAIEALEE 198 (216)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhcc
Confidence 55655544
No 328
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=47.03 E-value=42 Score=31.00 Aligned_cols=106 Identities=11% Similarity=0.035 Sum_probs=62.6
Q ss_pred cCChHHHHHHHHHHHHH-cCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCe
Q 008205 146 TQSDLYQMAAIADIVDY-FGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSR 224 (574)
Q Consensus 146 ~ps~~~~~~ai~~ll~~-~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~ 224 (574)
.|+...-+..+++.+.. ..-+++.++..+. ....+.+.+++.|+.+.....+.. ..........+.++..+.+
T Consensus 97 ~~~~~~~s~~L~~~l~~~~~~~~vl~~~g~~-----~~~~l~~~L~~~g~~v~~~~vY~~-~~~~~~~~~~~~l~~~~~~ 170 (231)
T PF02602_consen 97 VPSSEGSSEGLAELLKEQLRGKRVLILRGEG-----GRPDLPEKLREAGIEVTEVIVYET-PPEELSPELKEALDRGEID 170 (231)
T ss_dssp E-TTSSSHHHHHGGHHHCCTTEEEEEEESSS-----SCHHHHHHHHHTTEEEEEEECEEE-EEHHHHHHHHHHHHHTTTS
T ss_pred cCCCCCCHHHHHHHHHhhCCCCeEEEEcCCC-----ccHHHHHHHHHCCCeEEEEEEeec-ccccchHHHHHHHHcCCCC
Confidence 34423345777887664 4448888877544 357788999999988776554432 1223334455556556666
Q ss_pred EEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeC
Q 008205 225 ILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD 258 (574)
Q Consensus 225 viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~ 258 (574)
+|++.++..+..+++...+.+-......++..+
T Consensus 171 -~v~ftS~~~~~~~~~~~~~~~~~~~~~~~~~ig 203 (231)
T PF02602_consen 171 -AVVFTSPSAVRAFLELLKKNGALLKRVPIVAIG 203 (231)
T ss_dssp -EEEESSHHHHHHHHHHSSGHHHHHTTSEEEESS
T ss_pred -EEEECCHHHHHHHHHHhHhhhhhhhCCEEEEEC
Confidence 555668888888887765432112344455443
No 329
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=46.25 E-value=1e+02 Score=28.96 Aligned_cols=76 Identities=14% Similarity=0.076 Sum_probs=39.6
Q ss_pred EEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHC
Q 008205 168 VIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHL 245 (574)
Q Consensus 168 v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~ 245 (574)
|++|..+ +.+.....+.+.+.+++.|+.+..... ..+.......++.+...+.+.||+.........+++++.+.
T Consensus 2 Igvv~~~~~~~~~~~~~~~i~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~ 78 (269)
T cd06281 2 IGCLVSDITNPLLAQLFSGAEDRLRAAGYSLLIANS---LNDPERELEILRSFEQRRMDGIIIAPGDERDPELVDALASL 78 (269)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHHcCCEEEEEeC---CCChHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHHHhC
Confidence 4555543 345555666777777777776554321 11233344556666666666666653322223445555554
Q ss_pred C
Q 008205 246 R 246 (574)
Q Consensus 246 g 246 (574)
+
T Consensus 79 ~ 79 (269)
T cd06281 79 D 79 (269)
T ss_pred C
Confidence 4
No 330
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=45.54 E-value=91 Score=29.40 Aligned_cols=80 Identities=14% Similarity=0.063 Sum_probs=46.5
Q ss_pred EEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh-HHHHHHHHHHH
Q 008205 167 NVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEVLNAAK 243 (574)
Q Consensus 167 ~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~-~~~~~il~~a~ 243 (574)
||++|..+ ++|.......+.+.+++.|+.+.....-. ..+.......++.+...+.+.||+.... ......+..+.
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~i~~l~~~~vdgvii~~~~~~~~~~~l~~~~ 79 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKELGVKVTFQGPAS-ETDVAGQVNLLENAIARGPDAILLAPTDAKALVPPLKEAK 79 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecCcc-CCCHHHHHHHHHHHHHhCCCEEEEcCCChhhhHHHHHHHH
Confidence 46666644 44556667788888888888776432110 1233344556666666677777775332 32345666666
Q ss_pred HCCC
Q 008205 244 HLRM 247 (574)
Q Consensus 244 ~~gm 247 (574)
..|+
T Consensus 80 ~~~i 83 (273)
T cd06310 80 DAGI 83 (273)
T ss_pred HCCC
Confidence 6553
No 331
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=44.79 E-value=3e+02 Score=26.63 Aligned_cols=92 Identities=14% Similarity=0.080 Sum_probs=60.2
Q ss_pred CcEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEE--ec---CC---hHHHHHHHHHHHHHc-----
Q 008205 97 ETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVR--TT---QS---DLYQMAAIADIVDYF----- 163 (574)
Q Consensus 97 ~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r--~~---ps---~~~~~~ai~~ll~~~----- 163 (574)
-++.++||........++.++.+.++=.+....... ...-.||.| +. |. ...+..++.++.+.+
T Consensus 10 ~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d---~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~~l~l~~~ 86 (289)
T PRK13010 10 YVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDD---DESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAEKFDMQWA 86 (289)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccc---cccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHhCCeEE
Confidence 478899999999999999999988888776433211 112245555 22 22 345566677776665
Q ss_pred -----CCeEEEEEEEcCCCCcchHHHHHHHHhhcCc
Q 008205 164 -----GWRNVIALYVDDDHGRNGIAALGDKLAEKRC 194 (574)
Q Consensus 164 -----~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~ 194 (574)
...+++++.+... ..++.+.+..+...+
T Consensus 87 i~~~~~~~kiavl~Sg~g---~nl~al~~~~~~~~l 119 (289)
T PRK13010 87 IHPDGQRPKVVIMVSKFD---HCLNDLLYRWRMGEL 119 (289)
T ss_pred EecCCCCeEEEEEEeCCC---ccHHHHHHHHHCCCC
Confidence 3578888886653 246777777665543
No 332
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=44.63 E-value=1.8e+02 Score=23.98 Aligned_cols=25 Identities=20% Similarity=-0.045 Sum_probs=16.0
Q ss_pred ChHHHHHHHHHHHHHcCCeEEEEEE
Q 008205 148 SDLYQMAAIADIVDYFGWRNVIALY 172 (574)
Q Consensus 148 s~~~~~~ai~~ll~~~~W~~v~ii~ 172 (574)
+...|-..+-++....||.-+.++.
T Consensus 15 s~~~Q~~~~~~~a~~~g~~i~~~~~ 39 (137)
T cd00338 15 SLERQREALREYAARNGLEVVGEYE 39 (137)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEEE
Confidence 3445667777777777887655444
No 333
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=44.26 E-value=1.1e+02 Score=29.55 Aligned_cols=78 Identities=14% Similarity=0.079 Sum_probs=49.8
Q ss_pred EEEEEEEc--CCCCcchHHHHHHHHhh--cCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe-ChHHHHHHHHH
Q 008205 167 NVIALYVD--DDHGRNGIAALGDKLAE--KRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT-YDIWGLEVLNA 241 (574)
Q Consensus 167 ~v~ii~~~--~~~g~~~~~~l~~~~~~--~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~-~~~~~~~il~~ 241 (574)
+|++|..+ +.|.....+.+.+.+++ .|+.+... +...+.......++.+...+.+.||+.. ++......+++
T Consensus 1 ~Igviv~~~~~~~~~~~~~gi~~~a~~~~~g~~~~~~---~~~~~~~~q~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~ 77 (303)
T cd01539 1 KIGVFLYKFDDTFISLVRKNLEDIQKENGGKVEFTFY---DAKNNQSTQNEQIDTALAKGVDLLAVNLVDPTAAQTVINK 77 (303)
T ss_pred CeEEEeeCCCChHHHHHHHHHHHHHHhhCCCeeEEEe---cCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhHHHHHHH
Confidence 35666654 34555667788888888 77766543 2122334445667777778888887753 44445677888
Q ss_pred HHHCCC
Q 008205 242 AKHLRM 247 (574)
Q Consensus 242 a~~~gm 247 (574)
+.+.|+
T Consensus 78 ~~~~gi 83 (303)
T cd01539 78 AKQKNI 83 (303)
T ss_pred HHHCCC
Confidence 877665
No 334
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=44.11 E-value=1.3e+02 Score=29.93 Aligned_cols=82 Identities=12% Similarity=0.007 Sum_probs=51.8
Q ss_pred HHHHHHHHHcCC--eEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC---CCeEEEE
Q 008205 154 AAIADIVDYFGW--RNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM---MSRILIL 228 (574)
Q Consensus 154 ~ai~~ll~~~~W--~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~---~~~viil 228 (574)
..+.++++.++. +++.++++.... . ..+.+.+++.|+.+.....+..+++.++.....+..++. +.+.||-
T Consensus 12 ~~l~~~~~~~g~~~~~~lvvtd~~~~---~-~~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIa 87 (347)
T cd08184 12 DQLNDLLAPKRKNKDPAVFFVDDVFQ---G-KDLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVG 87 (347)
T ss_pred HHHHHHHHHcCCCCCeEEEEECcchh---h-hHHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEE
Confidence 456667777764 667777732221 1 567777887777654444455556677777888888776 8898887
Q ss_pred EeC--hHHHHHHH
Q 008205 229 HTY--DIWGLEVL 239 (574)
Q Consensus 229 ~~~--~~~~~~il 239 (574)
.+. .-++...+
T Consensus 88 iGGGS~iD~AKai 100 (347)
T cd08184 88 IGGGSTLDVAKAV 100 (347)
T ss_pred eCCcHHHHHHHHH
Confidence 643 34444444
No 335
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=44.08 E-value=1.1e+02 Score=29.49 Aligned_cols=78 Identities=5% Similarity=-0.157 Sum_probs=49.3
Q ss_pred EEEEEE--cCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC-hHHHHHHHHHHHH
Q 008205 168 VIALYV--DDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNAAKH 244 (574)
Q Consensus 168 v~ii~~--~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-~~~~~~il~~a~~ 244 (574)
+++|.. ++.|.......+++.+++.|+.+.... +...+.......++.+...+++.||+... ......+++++.+
T Consensus 2 I~vi~~~~~~~f~~~i~~gi~~~a~~~g~~v~~~~--~~~~d~~~~~~~i~~~~~~~~DgiIi~~~~~~~~~~~~~~~~~ 79 (298)
T cd06302 2 IAFVPKVTGIPYFNRMEEGAKEAAKELGVDAIYVG--PTTADAAGQVQIIEDLIAQGVDAIAVVPNDPDALEPVLKKARE 79 (298)
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHHHhCCeEEEEC--CCCCCHHHHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHHHHH
Confidence 455553 345666777888888889998776421 21123444556777776778888888643 3334567777777
Q ss_pred CCC
Q 008205 245 LRM 247 (574)
Q Consensus 245 ~gm 247 (574)
.|+
T Consensus 80 ~~i 82 (298)
T cd06302 80 AGI 82 (298)
T ss_pred CCC
Confidence 664
No 336
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=44.05 E-value=57 Score=32.96 Aligned_cols=77 Identities=8% Similarity=-0.007 Sum_probs=52.1
Q ss_pred cCCeEEEEEEEcCCCC-cchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC--hHHHHHHH
Q 008205 163 FGWRNVIALYVDDDHG-RNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY--DIWGLEVL 239 (574)
Q Consensus 163 ~~W~~v~ii~~~~~~g-~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~--~~~~~~il 239 (574)
++-+++.+|++....- ....+.+.+.+++.|+.+.....+.++++.+...+.++.+++.+.+.||-.+. .-++...+
T Consensus 21 ~~~~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSviD~AK~i 100 (375)
T cd08179 21 LKGKKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGGGSPIDAAKAM 100 (375)
T ss_pred hcCCeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHH
Confidence 3458888888543221 23567888999888887654434444566777888889999999998888643 44444444
No 337
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.
Probab=43.40 E-value=61 Score=31.20 Aligned_cols=38 Identities=26% Similarity=0.353 Sum_probs=21.7
Q ss_pred CchhHHHHHHHHHHHHhhcccccCCCCCCCCeEEEEEEeccC
Q 008205 1 MTKIYLLALVVVYNFCFSAGISMNGVSTIPPVLNIGAVFALN 42 (574)
Q Consensus 1 M~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~IG~l~~~~ 42 (574)
|+|++++.++++|. ++ + |.......+.+++||...+.+
T Consensus 1 ~~~~~~~~~~~~~~--~~-~-~~~~~~~~~~~l~vg~~~~~~ 38 (288)
T TIGR03431 1 MLRRLILSLVAAFM--LI-S-SNAQAEDWPKELNFGIIPTEN 38 (288)
T ss_pred ChhhHHHHHHHHHH--HH-h-cchhhhcCCCeEEEEEcCCCC
Confidence 88876666655542 22 2 222223334789999876554
No 338
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=43.34 E-value=1.5e+02 Score=28.98 Aligned_cols=80 Identities=9% Similarity=-0.045 Sum_probs=47.9
Q ss_pred CeEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHH
Q 008205 165 WRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAA 242 (574)
Q Consensus 165 W~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a 242 (574)
-+.|+++..+ +.+.....+.+.+.+++.|+.+..... . .+...-...++.+...+.+.||+..........++++
T Consensus 61 ~~~Igvv~~~~~~~~~~~l~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l 137 (328)
T PRK11303 61 TRSIGLIIPDLENTSYARIAKYLERQARQRGYQLLIACS-D--DQPDNEMRCAEHLLQRQVDALIVSTSLPPEHPFYQRL 137 (328)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC-C--CCHHHHHHHHHHHHHcCCCEEEEcCCCCCChHHHHHH
Confidence 4578888753 445566677888888889988765321 1 2233334566667667788888764321123445566
Q ss_pred HHCCC
Q 008205 243 KHLRM 247 (574)
Q Consensus 243 ~~~gm 247 (574)
.+.|.
T Consensus 138 ~~~~i 142 (328)
T PRK11303 138 QNDGL 142 (328)
T ss_pred HhcCC
Confidence 55553
No 339
>COG3221 PhnD ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=43.14 E-value=54 Score=31.85 Aligned_cols=62 Identities=21% Similarity=0.219 Sum_probs=31.3
Q ss_pred CCeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHH-hHhcCcE-EEEcCC
Q 008205 30 PPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALT-LLENETV-AIIGPQ 105 (574)
Q Consensus 30 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~-l~~~~v~-aiiGp~ 105 (574)
++++++|++-..++..-......+. +.+-+.- |++++..+. .|-.. +.+ +....+. |.+||.
T Consensus 34 ~~~l~~gi~p~e~~~~~~~~~~pl~---~~L~~~l----G~~V~~~~a---~dy~~----vieal~~g~~D~A~~~~~ 97 (299)
T COG3221 34 PKELRVGIVPTENPTNLIPAWAPLA---DYLEKEL----GIPVEFFVA---TDYAA----VIEALRAGQVDIAWLGPS 97 (299)
T ss_pred CcceEEEEcCCCChHHHHHHHHHHH---HHHHHHh----CCceEEEec---ccHHH----HHHHHhCCCeeEEecCch
Confidence 4679999887766432222233333 3333332 566666663 22222 233 3344555 666766
No 340
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=43.08 E-value=57 Score=29.83 Aligned_cols=57 Identities=14% Similarity=0.138 Sum_probs=41.7
Q ss_pred HHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHH
Q 008205 158 DIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLT 217 (574)
Q Consensus 158 ~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ 217 (574)
.+++++.-++|.+.+++|..|+....+..+.+.+.|+.+... .+| ....|+.+.++.
T Consensus 147 ~lLkr~~~~~Iil~~D~D~AG~~Aa~r~~~~L~~~G~~v~vv-~lP--~~~KDwNEllk~ 203 (218)
T TIGR00646 147 KFFKQKKIEKIFICFDNDFAGKNAAANLEEILKKAGFITKVI-EIK--AAAKDWNDLFLL 203 (218)
T ss_pred HHHhccCCCEEEEEeCCCHHHHHHHHHHHHHHHHCCCeEEEE-eCC--CcCCChhHHHHH
Confidence 356665568999999999889999988999999889876543 344 244667777654
No 341
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=42.89 E-value=2.1e+02 Score=27.87 Aligned_cols=83 Identities=13% Similarity=0.151 Sum_probs=46.9
Q ss_pred EEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHH--
Q 008205 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIA-- 110 (574)
Q Consensus 33 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~-- 110 (574)
=+||+++..++........-++...+. .|+++.-.......|...++ +.+...+.+|++|.+....
T Consensus 160 k~Igv~Y~p~E~ns~~l~eelk~~A~~--------~Gl~vve~~v~~~ndi~~a~----~~l~g~~d~i~~p~dn~i~s~ 227 (322)
T COG2984 160 KSIGVLYNPGEANSVSLVEELKKEARK--------AGLEVVEAAVTSVNDIPRAV----QALLGKVDVIYIPTDNLIVSA 227 (322)
T ss_pred eeEEEEeCCCCcccHHHHHHHHHHHHH--------CCCEEEEEecCcccccHHHH----HHhcCCCcEEEEecchHHHHH
Confidence 357777766542222222222222221 24555544444444444443 4445789999999888554
Q ss_pred -HHHHHhhccCCccEEec
Q 008205 111 -HLVSHIANEFQVPLLSF 127 (574)
Q Consensus 111 -~~va~~~~~~~iP~Is~ 127 (574)
..+...+...+||++..
T Consensus 228 ~~~l~~~a~~~kiPli~s 245 (322)
T COG2984 228 IESLLQVANKAKIPLIAS 245 (322)
T ss_pred HHHHHHHHHHhCCCeecC
Confidence 44556677889999963
No 342
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=42.80 E-value=1.2e+02 Score=28.44 Aligned_cols=80 Identities=11% Similarity=-0.006 Sum_probs=45.6
Q ss_pred EEEEEEEc--CCCCcchHHHHHHHHhhc---CcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh-HHHHHHHH
Q 008205 167 NVIALYVD--DDHGRNGIAALGDKLAEK---RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEVLN 240 (574)
Q Consensus 167 ~v~ii~~~--~~~g~~~~~~l~~~~~~~---g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~-~~~~~il~ 240 (574)
||+++..+ +.|.....+.+.+.+++. |..+.... .....+.......++++...+.+.||+.... ......+.
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~i-~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~l~ 79 (272)
T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAKELKKAGLISEFIV-TSADGDVAQQIADIRNLIAQGVDAIIINPASPTALNPVIE 79 (272)
T ss_pred CeEEeccccCChHHHHHHHHHHHHHHhhhccCCeeEEEE-ecCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHH
Confidence 35555533 344555667777778777 76432221 2211234445677777777788888886533 33344666
Q ss_pred HHHHCCC
Q 008205 241 AAKHLRM 247 (574)
Q Consensus 241 ~a~~~gm 247 (574)
.+.+.|.
T Consensus 80 ~~~~~~i 86 (272)
T cd06300 80 EACEAGI 86 (272)
T ss_pred HHHHCCC
Confidence 7766553
No 343
>PRK10481 hypothetical protein; Provisional
Probab=42.48 E-value=1.7e+02 Score=26.97 Aligned_cols=75 Identities=13% Similarity=0.136 Sum_probs=46.1
Q ss_pred HHHHHHc-CCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHH
Q 008205 157 ADIVDYF-GWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWG 235 (574)
Q Consensus 157 ~~ll~~~-~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~ 235 (574)
..++..+ +-++++++....+. .+...+.+...|..+.....-|.........+..++++..++++|+++|-.-..
T Consensus 120 ~~lv~Al~~g~riGVitP~~~q----i~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~ 195 (224)
T PRK10481 120 PPLVAAIVGGHQVGVIVPVEEQ----LAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYHQ 195 (224)
T ss_pred HHHHHHhcCCCeEEEEEeCHHH----HHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCH
Confidence 3444332 34899999976542 333334444447766544322222344567778888888999999999876444
No 344
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=42.06 E-value=1.7e+02 Score=27.24 Aligned_cols=87 Identities=8% Similarity=-0.063 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHc--CCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEE
Q 008205 152 QMAAIADIVDYF--GWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILH 229 (574)
Q Consensus 152 ~~~ai~~ll~~~--~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~ 229 (574)
.+..+++++... .-++|.++..+. ....+.+.+++.|..+.....+.......+.......+++.+.++|++
T Consensus 103 ~~e~L~~~~~~~~~~~~~vL~~rg~~-----~r~~l~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~i~f- 176 (240)
T PRK09189 103 DGVRLAETVAAALAPTARLLYLAGRP-----RAPVFEDRLAAAGIPFRVAECYDMLPVMYSPATLSAILGGAPFDAVLL- 176 (240)
T ss_pred CHHHHHHHHHHhcCCCCcEEEeccCc-----ccchhHHHHHhCCCeeEEEEEEEeecCCCChHHHHHHHhcCCCCEEEE-
Confidence 356777776443 446677776333 457788899999987655443321111112223445555556665554
Q ss_pred eChHHHHHHHHHHHH
Q 008205 230 TYDIWGLEVLNAAKH 244 (574)
Q Consensus 230 ~~~~~~~~il~~a~~ 244 (574)
.++..+..+++....
T Consensus 177 ~S~~~~~~f~~~~~~ 191 (240)
T PRK09189 177 YSRVAARRFFALMRL 191 (240)
T ss_pred eCHHHHHHHHHHHhh
Confidence 466778888877643
No 345
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=42.00 E-value=1.5e+02 Score=29.19 Aligned_cols=78 Identities=9% Similarity=0.040 Sum_probs=52.6
Q ss_pred eEEEEEEE--cCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChH-HHHHHHHHH
Q 008205 166 RNVIALYV--DDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI-WGLEVLNAA 242 (574)
Q Consensus 166 ~~v~ii~~--~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~-~~~~il~~a 242 (574)
.+++++.. +++|+....+.+++.+.+.|+.+..... ..+.......++.+...+.+.||+..... .....+..+
T Consensus 26 ~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~---~~~~~~~~~~i~~l~~~~vDGiIi~~~~~~~~~~~l~~~ 102 (330)
T PRK10355 26 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA---NGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVIKEA 102 (330)
T ss_pred ceEEEEecCCCchHHHHHHHHHHHHHHHcCCEEEEECC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHH
Confidence 56666664 3567778888999999999988765321 12444566778888888899888875432 234556666
Q ss_pred HHCC
Q 008205 243 KHLR 246 (574)
Q Consensus 243 ~~~g 246 (574)
.+.|
T Consensus 103 ~~~~ 106 (330)
T PRK10355 103 KQEG 106 (330)
T ss_pred HHCC
Confidence 6655
No 346
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=41.95 E-value=1.2e+02 Score=28.30 Aligned_cols=77 Identities=13% Similarity=-0.050 Sum_probs=42.9
Q ss_pred EEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHC
Q 008205 168 VIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHL 245 (574)
Q Consensus 168 v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~ 245 (574)
++++..+ +.|.....+.+.+.+++.|+.+..... .. .........++.+...+.+.||+..........++.+.+.
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~-~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~ 79 (270)
T cd01545 2 IGLLYDNPSPGYVSEIQLGALDACRDTGYQLVIEPC-DS-GSPDLAERVRALLQRSRVDGVILTPPLSDNPELLDLLDEA 79 (270)
T ss_pred EEEEEcCCCcccHHHHHHHHHHHHHhCCCeEEEEeC-CC-CchHHHHHHHHHHHHCCCCEEEEeCCCCCccHHHHHHHhc
Confidence 4555544 456667777888888888877654421 11 1122344555556666777777653222224455666555
Q ss_pred C
Q 008205 246 R 246 (574)
Q Consensus 246 g 246 (574)
+
T Consensus 80 ~ 80 (270)
T cd01545 80 G 80 (270)
T ss_pred C
Confidence 5
No 347
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=41.90 E-value=2.5e+02 Score=24.86 Aligned_cols=84 Identities=10% Similarity=-0.019 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhc--CcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEE
Q 008205 151 YQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEK--RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILIL 228 (574)
Q Consensus 151 ~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~--g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil 228 (574)
++...+.+....-+ .++.++....+ .++.+.+.+++. |+.|... ... .+..+-..++++|.+++++++++
T Consensus 35 dl~~~l~~~~~~~~-~~vfllG~~~~----v~~~~~~~l~~~yP~l~i~g~--~g~-f~~~~~~~i~~~I~~s~~dil~V 106 (177)
T TIGR00696 35 DLMEELCQRAGKEK-LPIFLYGGKPD----VLQQLKVKLIKEYPKLKIVGA--FGP-LEPEERKAALAKIARSGAGIVFV 106 (177)
T ss_pred HHHHHHHHHHHHcC-CeEEEECCCHH----HHHHHHHHHHHHCCCCEEEEE--CCC-CChHHHHHHHHHHHHcCCCEEEE
Confidence 45566666666666 47777765554 445555555544 5666654 221 23445567889999999999999
Q ss_pred EeChHHHHHHHHHH
Q 008205 229 HTYDIWGLEVLNAA 242 (574)
Q Consensus 229 ~~~~~~~~~il~~a 242 (574)
......-..++.+.
T Consensus 107 glG~PkQE~~~~~~ 120 (177)
T TIGR00696 107 GLGCPKQEIWMRNH 120 (177)
T ss_pred EcCCcHhHHHHHHh
Confidence 86555445555444
No 348
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=41.64 E-value=1.9e+02 Score=28.84 Aligned_cols=93 Identities=9% Similarity=0.002 Sum_probs=57.6
Q ss_pred CceEEecCChHHHHHHHHHHHHHcCC-eEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHh
Q 008205 140 PFFVRTTQSDLYQMAAIADIVDYFGW-RNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTV 218 (574)
Q Consensus 140 ~~~~r~~ps~~~~~~ai~~ll~~~~W-~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i 218 (574)
|+-+...+.. ...+.++++.++. +++.+|++...+. ...+.+++.++..+ .+... +.++.+.+.+...++.+
T Consensus 11 p~~i~~G~g~---l~~l~~~l~~~~~~~~~livtd~~~~~-~~~~~l~~~l~~~~-~~~~~--~~~~~t~~~v~~~~~~~ 83 (350)
T PRK00843 11 PRDVVVGHGV---LDDIGDVCSDLKLTGRALIVTGPTTKK-IAGDRVEENLEDAG-DVEVV--IVDEATMEEVEKVEEKA 83 (350)
T ss_pred CCeEEECCCH---HHHHHHHHHHhCCCCeEEEEECCcHHH-HHHHHHHHHHHhcC-CeeEE--eCCCCCHHHHHHHHHHh
Confidence 4444444432 3456677787776 7898888655432 24567788887776 44322 33345667788888888
Q ss_pred hcCCCeEEEEEeC--hHHHHHHH
Q 008205 219 SSMMSRILILHTY--DIWGLEVL 239 (574)
Q Consensus 219 k~~~~~viil~~~--~~~~~~il 239 (574)
++.+.++||..+. ..++..++
T Consensus 84 ~~~~~d~IIaiGGGsv~D~ak~v 106 (350)
T PRK00843 84 KDVNAGFLIGVGGGKVIDVAKLA 106 (350)
T ss_pred hccCCCEEEEeCCchHHHHHHHH
Confidence 8888888876643 33444443
No 349
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=41.52 E-value=1.7e+02 Score=28.78 Aligned_cols=81 Identities=10% Similarity=-0.001 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC
Q 008205 152 QMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (574)
Q Consensus 152 ~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~ 231 (574)
.++.+..+.++++-+++.++- |........+.+.+.....|+++... +.++....+++-+..+.++++++-+
T Consensus 176 HGQV~~~W~~~~~~~~IiVvd-D~vA~D~~~k~~lk~A~P~gvk~~i~-------sv~~a~~~l~~~~~~~~~vlil~k~ 247 (322)
T PRK15088 176 HGQVATRWTKETNVSRIIVVS-DEVAADTVRKTLLTQVAPPGVTAHVV-------DVAKMIRVYNNPKYAGERVMLLFTN 247 (322)
T ss_pred hHHHHHHHhhccCCCEEEEeC-ccccCCHHHHHHHHhcCCCCCeEEEE-------EHHHHHHHHhCCCCCCCeEEEEECC
Confidence 567778899999999998884 33333446677777777778877542 2234445555545567789999999
Q ss_pred hHHHHHHHH
Q 008205 232 DIWGLEVLN 240 (574)
Q Consensus 232 ~~~~~~il~ 240 (574)
+.++.++++
T Consensus 248 p~d~~~l~~ 256 (322)
T PRK15088 248 PTDVERLVE 256 (322)
T ss_pred HHHHHHHHH
Confidence 999888866
No 350
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=41.35 E-value=2.8e+02 Score=27.79 Aligned_cols=100 Identities=9% Similarity=-0.085 Sum_probs=58.6
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEe--ecCCCCChhhHHHHHHHhhcCCCe---EEEE
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKV--PLSPKGSRNQIIDTLLTVSSMMSR---ILIL 228 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~--~~~~~~~~~~~~~~l~~ik~~~~~---viil 228 (574)
.-+.++++.++-+++.+|++...+ ....+.+.+.+++.|+.+.... ....+.+.+.+...+..+++.+.+ .||.
T Consensus 12 ~~l~~~l~~~g~~rvlvVtd~~v~-~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~dr~~~IIA 90 (355)
T cd08197 12 DSVLGYLPELNADKYLLVTDSNVE-DLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALALGATRRSVIVA 90 (355)
T ss_pred HHHHHHHHhcCCCeEEEEECccHH-HHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEE
Confidence 335566777777899999865543 3356788888988887643322 122223446677778888777776 6665
Q ss_pred EeC--hHHHHHHHHHHHHCCCCCCCeEEEEe
Q 008205 229 HTY--DIWGLEVLNAAKHLRMMESGYVWIVT 257 (574)
Q Consensus 229 ~~~--~~~~~~il~~a~~~gm~~~~~~~i~~ 257 (574)
.+. ..++..++......| ..++.|-|
T Consensus 91 vGGGsv~D~ak~~A~~~~rg---ip~I~IPT 118 (355)
T cd08197 91 LGGGVVGNIAGLLAALLFRG---IRLVHIPT 118 (355)
T ss_pred ECCcHHHHHHHHHHHHhccC---CCEEEecC
Confidence 543 344444443333223 34555544
No 351
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=41.20 E-value=1.4e+02 Score=29.51 Aligned_cols=80 Identities=10% Similarity=-0.093 Sum_probs=51.3
Q ss_pred eEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC-hHHHHHHHHHH
Q 008205 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNAA 242 (574)
Q Consensus 166 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-~~~~~~il~~a 242 (574)
+.|++|..+ +.+.....+.+++.+++.|+.+....... ..+.......++.+...+.+.||+.+. .......+ ++
T Consensus 47 ~~Igvv~p~~~~~f~~~~~~gi~~aa~~~G~~l~i~~~~~-~~~~~~q~~~i~~l~~~~vdgIIl~~~~~~~~~~~l-~~ 124 (343)
T PRK10936 47 WKLCALYPHLKDSYWLSVNYGMVEEAKRLGVDLKVLEAGG-YYNLAKQQQQLEQCVAWGADAILLGAVTPDGLNPDL-EL 124 (343)
T ss_pred eEEEEEecCCCchHHHHHHHHHHHHHHHhCCEEEEEcCCC-CCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHH-HH
Confidence 678888755 45566677788889999998876543211 123334456677777788888888653 33333455 66
Q ss_pred HHCCC
Q 008205 243 KHLRM 247 (574)
Q Consensus 243 ~~~gm 247 (574)
.+.|.
T Consensus 125 ~~~gi 129 (343)
T PRK10936 125 QAANI 129 (343)
T ss_pred HHCCC
Confidence 66664
No 352
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=41.09 E-value=1.4e+02 Score=28.68 Aligned_cols=80 Identities=6% Similarity=-0.018 Sum_probs=49.4
Q ss_pred CeEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh-HHHHHHHHH
Q 008205 165 WRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEVLNA 241 (574)
Q Consensus 165 W~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~-~~~~~il~~ 241 (574)
=+.++++..+ +.|.......+.+.+++.|+.+..... ..+.......++.+...+.+.+++.... ......+..
T Consensus 26 ~~~I~vi~~~~~~~f~~~~~~~i~~~~~~~G~~~~~~~~---~~d~~~~~~~~~~l~~~~~dgiii~~~~~~~~~~~l~~ 102 (295)
T PRK10653 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS---QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKM 102 (295)
T ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHHHcCCeEEEecC---CCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHH
Confidence 4577877753 345666778888888899987764321 1233344566667766677767665432 333456677
Q ss_pred HHHCCC
Q 008205 242 AKHLRM 247 (574)
Q Consensus 242 a~~~gm 247 (574)
+.+.|.
T Consensus 103 ~~~~~i 108 (295)
T PRK10653 103 ANQANI 108 (295)
T ss_pred HHHCCC
Confidence 766554
No 353
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=40.53 E-value=1.6e+02 Score=27.66 Aligned_cols=78 Identities=13% Similarity=-0.035 Sum_probs=44.9
Q ss_pred CCeEEEEEEEc---------CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHH
Q 008205 164 GWRNVIALYVD---------DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIW 234 (574)
Q Consensus 164 ~W~~v~ii~~~---------~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~ 234 (574)
+++.+++|.++ +.+.....+.+.+.+++.|+.+.... .. .. +.....+.+...+.+.||+......
T Consensus 2 ~s~~i~vi~p~~~~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~v~~-~~--~~--~~~~~~~~l~~~~~dgiii~~~~~~ 76 (275)
T cd06295 2 RTDTIALVVPEPHERDQSFSDPFFLSLLGGIADALAERGYDLLLSF-VS--SP--DRDWLARYLASGRADGVILIGQHDQ 76 (275)
T ss_pred CceEEEEEecCccccccccCCchHHHHHHHHHHHHHHcCCEEEEEe-CC--ch--hHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 35678888853 23455566778888888888776532 11 11 2334444555567887777533222
Q ss_pred HHHHHHHHHHCCC
Q 008205 235 GLEVLNAAKHLRM 247 (574)
Q Consensus 235 ~~~il~~a~~~gm 247 (574)
...++++.+.|.
T Consensus 77 -~~~~~~~~~~~i 88 (275)
T cd06295 77 -DPLPERLAETGL 88 (275)
T ss_pred -hHHHHHHHhCCC
Confidence 234666666554
No 354
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=40.25 E-value=2.2e+02 Score=23.85 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHcCCeEEE
Q 008205 150 LYQMAAIADIVDYFGWRNVI 169 (574)
Q Consensus 150 ~~~~~ai~~ll~~~~W~~v~ 169 (574)
..|-.++-++.+..||.-+.
T Consensus 21 e~Q~~~l~~~a~~~g~~i~~ 40 (140)
T cd03770 21 ENQKAILEEYAKENGLENIR 40 (140)
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 44455555566666776444
No 355
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=40.15 E-value=1.6e+02 Score=27.58 Aligned_cols=76 Identities=11% Similarity=-0.027 Sum_probs=44.8
Q ss_pred EEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHC
Q 008205 168 VIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHL 245 (574)
Q Consensus 168 v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~ 245 (574)
+++|..+ +.+.......+.+.+++.|+.+..... ..+...-...++.+...+.+.||+....... ..++++.+.
T Consensus 2 igvi~p~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~~~~~~vdgii~~~~~~~~-~~~~~~~~~ 77 (268)
T cd06270 2 IGLVVSDLDGPFFGPLLSGVESVARKAGKHLIITAG---HHSAEKEREAIEFLLERRCDALILHSKALSD-DELIELAAQ 77 (268)
T ss_pred EEEEEccccCcchHHHHHHHHHHHHHCCCEEEEEeC---CCchHHHHHHHHHHHHcCCCEEEEecCCCCH-HHHHHHhhC
Confidence 3455433 456667778888888888887764321 1233334566777777788888876532222 226666665
Q ss_pred CC
Q 008205 246 RM 247 (574)
Q Consensus 246 gm 247 (574)
|.
T Consensus 78 ~i 79 (268)
T cd06270 78 VP 79 (268)
T ss_pred CC
Confidence 53
No 356
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=40.14 E-value=1.7e+02 Score=28.68 Aligned_cols=79 Identities=9% Similarity=-0.067 Sum_probs=48.5
Q ss_pred eEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHH
Q 008205 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAK 243 (574)
Q Consensus 166 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~ 243 (574)
+.++++..+ ++|.....+.+.+.+.+.|..+..... ..+.......++.+...+.+.||+..........+..+.
T Consensus 65 ~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~ 141 (342)
T PRK10014 65 GVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLLQG---GKDGEQLAQRFSTLLNQGVDGVVIAGAAGSSDDLREMAE 141 (342)
T ss_pred CEEEEEeCCCccchHHHHHHHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEeCCCCCcHHHHHHHh
Confidence 467777754 455666677788888888876654211 123334456677777777888887643322345566666
Q ss_pred HCCC
Q 008205 244 HLRM 247 (574)
Q Consensus 244 ~~gm 247 (574)
+.|.
T Consensus 142 ~~~i 145 (342)
T PRK10014 142 EKGI 145 (342)
T ss_pred hcCC
Confidence 6553
No 357
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=39.83 E-value=82 Score=28.28 Aligned_cols=70 Identities=16% Similarity=0.120 Sum_probs=44.4
Q ss_pred HHHHhcCCCCCCCcEEEEEEe-cCCCCHHHHHHHHHHhH---h-cCcEEEEcCCChHHHHHHHHhhccCCccEEec
Q 008205 57 VEDVNSNPAILGGTKLKLTVH-DTNYSRFLGMVEALTLL---E-NETVAIIGPQFSVIAHLVSHIANEFQVPLLSF 127 (574)
Q Consensus 57 v~~iN~~~~~l~g~~l~~~~~-d~~~~~~~a~~~~~~l~---~-~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~ 127 (574)
.+.||+.+.++||--+....+ |.+.||...-..+..+. . .++.+|+|+.......+ ..++...++|++-.
T Consensus 5 ~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~l~~v~~~l~~~~~~~~~d~Vv~~ea~Gi~la-~~lA~~Lg~p~v~v 79 (191)
T TIGR01744 5 KQKIKEEGVVLPGGILKVDSFLNHQIDPKLMQEVGEEFARRFADDGITKIVTIEASGIAPA-IMTGLKLGVPVVFA 79 (191)
T ss_pred HHHHhcCCEEcCCCEEEEehhhccccCHHHHHHHHHHHHHHhccCCCCEEEEEccccHHHH-HHHHHHHCCCEEEE
Confidence 578899988998877776655 44447644332222222 2 27899999876655332 34566778998864
No 358
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=39.52 E-value=1.9e+02 Score=27.47 Aligned_cols=79 Identities=14% Similarity=0.039 Sum_probs=49.5
Q ss_pred eEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh-HHHHHHHHHH
Q 008205 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEVLNAA 242 (574)
Q Consensus 166 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~-~~~~~il~~a 242 (574)
++++++..+ +.+.....+.+.+.+++.|..+.... . ..+.......++.+...+.+.||+.... +.....++.+
T Consensus 1 ~~ig~i~~~~~~~~~~~~~~gi~~~a~~~gy~~~~~~--~-~~~~~~~~~~i~~l~~~~vdgiil~~~~~~~~~~~~~~~ 77 (280)
T cd06315 1 KNIIFVASDLKNGGILGVGEGVREAAKAIGWNLRILD--G-RGSEAGQAAALNQAIALKPDGIVLGGVDAAELQAELELA 77 (280)
T ss_pred CeEEEEecccCCcHHHHHHHHHHHHHHHcCcEEEEEC--C-CCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHH
Confidence 357777754 34555677888888888898775432 1 1234445577778888888888886432 2223445656
Q ss_pred HHCCC
Q 008205 243 KHLRM 247 (574)
Q Consensus 243 ~~~gm 247 (574)
.+.+.
T Consensus 78 ~~~~i 82 (280)
T cd06315 78 QKAGI 82 (280)
T ss_pred HHCCC
Confidence 66553
No 359
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=39.38 E-value=3.1e+02 Score=25.26 Aligned_cols=127 Identities=16% Similarity=0.130 Sum_probs=67.3
Q ss_pred CHHHHHH-HHHHhHhcCcEEEEcCCChHHHHHHH-HhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHH
Q 008205 82 SRFLGMV-EALTLLENETVAIIGPQFSVIAHLVS-HIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADI 159 (574)
Q Consensus 82 ~~~~a~~-~~~~l~~~~v~aiiGp~~s~~~~~va-~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~l 159 (574)
++...+. .+..|-..|...|+=|.... ..++ .+-..-+||+|+. .++-++=
T Consensus 59 ~~~~~L~~~a~~Le~~GAd~i~l~~NT~--H~~~d~iq~~~~iPllhI-------------------------idaTa~~ 111 (230)
T COG1794 59 EAGEILIDAAKKLERAGADFIVLPTNTM--HKVADDIQKAVGIPLLHI-------------------------IDATAKA 111 (230)
T ss_pred cHHHHHHHHHHHHHhcCCCEEEEeCCcH--HHHHHHHHHhcCCCeehH-------------------------HHHHHHH
Confidence 3444433 33344444888888655443 3333 3335678888863 3556666
Q ss_pred HHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHH-hhcCCCeEEEEEeChHHHHHH
Q 008205 160 VDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLT-VSSMMSRILILHTYDIWGLEV 238 (574)
Q Consensus 160 l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~-ik~~~~~viil~~~~~~~~~i 238 (574)
+++-|-++++++.....- ...-.++.+.++|+.+. +|.......+.+.+-+ ++. -.+...+-+.-..+
T Consensus 112 ik~~g~kkvgLLgT~~Tm---~~~fY~~~l~~~gievv----vPdd~~q~~v~~iIy~El~~----G~~~~~sr~~~~~i 180 (230)
T COG1794 112 IKAAGAKKVGLLGTRFTM---EQGFYRKRLEEKGIEVV----VPDDDEQAEVNRIIYEELCQ----GIVKDASRELYLAV 180 (230)
T ss_pred HHhcCCceeEEeeccchH---HhHHHHHHHHHCCceEe----cCCHHHHHHHHHHHHHHHhc----ccchHHHHHHHHHH
Confidence 777788899988755421 22345667778886653 3321111222222222 332 23333444555566
Q ss_pred HHHHHHCC
Q 008205 239 LNAAKHLR 246 (574)
Q Consensus 239 l~~a~~~g 246 (574)
++.+.+.|
T Consensus 181 i~~l~~~G 188 (230)
T COG1794 181 IERLAERG 188 (230)
T ss_pred HHHHHHcC
Confidence 66666665
No 360
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=38.79 E-value=4e+02 Score=26.40 Aligned_cols=131 Identities=18% Similarity=0.161 Sum_probs=70.5
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc--CcEEEEcCCChHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN--ETVAIIGPQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~--~v~aiiGp~~s~~~~ 111 (574)
.++.+|...+ -+.+.+|+.|+.++ ++..+.+...++.-.--+.++-..+.++. .++++=.+.. .
T Consensus 47 ~l~~lF~epS---TRTR~SFE~A~~~L-------Gg~~i~l~~~~s~~~kgEsl~Dtarvls~y~D~iviR~~~~----~ 112 (334)
T PRK12562 47 NIALIFEKDS---TRTRCSFEVAAYDQ-------GARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGHGQ----E 112 (334)
T ss_pred EEEEEECCCC---chhHHHHHHHHHHc-------CCeEEEeCCccccCCCCcCHHHHHHHHHHhCCEEEEECCch----H
Confidence 4888887765 36889999999875 44444332222221111223333333443 3333334322 2
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcCC---e--EEEEEEEcCCCCcchHH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFGW---R--NVIALYVDDDHGRNGIA 183 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~W---~--~v~ii~~~~~~g~~~~~ 183 (574)
.+..++....||+|.-. + +...| .++++|++ +++|+ + +++++. |..+ ....
T Consensus 113 ~~~~~a~~~~vPVINa~-~-----~~~HP------------tQaLaDl~Ti~e~~g~~~l~gl~va~vG-D~~~--~v~~ 171 (334)
T PRK12562 113 VVETLAEYAGVPVWNGL-T-----NEFHP------------TQLLADLLTMQEHLPGKAFNEMTLVYAG-DARN--NMGN 171 (334)
T ss_pred HHHHHHHhCCCCEEECC-C-----CCCCh------------HHHHHHHHHHHHHhCCCCcCCcEEEEEC-CCCC--CHHH
Confidence 45666777789999742 1 11222 26777763 56653 3 555554 2112 3566
Q ss_pred HHHHHHhhcCcEEEEE
Q 008205 184 ALGDKLAEKRCRLSHK 199 (574)
Q Consensus 184 ~l~~~~~~~g~~v~~~ 199 (574)
.+...+...|..+...
T Consensus 172 S~~~~~~~~G~~v~~~ 187 (334)
T PRK12562 172 SMLEAAALTGLDLRLV 187 (334)
T ss_pred HHHHHHHHcCCEEEEE
Confidence 6666777778776543
No 361
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=38.78 E-value=33 Score=23.26 Aligned_cols=18 Identities=17% Similarity=0.359 Sum_probs=10.3
Q ss_pred CchhHHHHHHHHHHHHhh
Q 008205 1 MTKIYLLALVVVYNFCFS 18 (574)
Q Consensus 1 M~~~~~~~~~~~~~~~~~ 18 (574)
||+.+..+++++.+++++
T Consensus 1 mk~~~~s~~ala~l~sLA 18 (58)
T COG5567 1 MKNVFKSLLALATLFSLA 18 (58)
T ss_pred ChhHHHHHHHHHHHHHHH
Confidence 888775555555444443
No 362
>PF13155 Toprim_2: Toprim-like
Probab=38.77 E-value=49 Score=25.49 Aligned_cols=41 Identities=15% Similarity=0.302 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcC
Q 008205 153 MAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKR 193 (574)
Q Consensus 153 ~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g 193 (574)
...+.++++..+-++|.+..++|..|....+.+.+.+...+
T Consensus 35 ~~~~~~~l~~~~~~~i~l~~DnD~aG~~~~~~~~~~l~~~~ 75 (96)
T PF13155_consen 35 EKQQIKFLKENPYKKIVLAFDNDEAGRKAAEKLQKELKEEG 75 (96)
T ss_pred HHHHHHHHHhCCCCcEEEEeCCCHHHHHHHHHHHHHHHhhC
Confidence 35778888766558899999889999999999999998876
No 363
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=38.66 E-value=1.5e+02 Score=28.03 Aligned_cols=79 Identities=8% Similarity=0.055 Sum_probs=44.8
Q ss_pred EEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC-hHHHHHHHHHHHH
Q 008205 168 VIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNAAKH 244 (574)
Q Consensus 168 v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-~~~~~~il~~a~~ 244 (574)
+++|..+ +++.......+.+.+++.|+.+..... +...+...-...++.+...+.+.||+... .......++.+.+
T Consensus 2 igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~ 80 (275)
T cd06320 2 YGVVLKTLSNEFWRSLKEGYENEAKKLGVSVDIQAA-PSEGDQQGQLSIAENMINKGYKGLLFSPISDVNLVPAVERAKK 80 (275)
T ss_pred eeEEEecCCCHHHHHHHHHHHHHHHHhCCeEEEEcc-CCCCCHHHHHHHHHHHHHhCCCEEEECCCChHHhHHHHHHHHH
Confidence 5566543 345556667788888888887664321 11112233445666676677777776543 2333445666666
Q ss_pred CCC
Q 008205 245 LRM 247 (574)
Q Consensus 245 ~gm 247 (574)
.|.
T Consensus 81 ~~i 83 (275)
T cd06320 81 KGI 83 (275)
T ss_pred CCC
Confidence 554
No 364
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=38.58 E-value=2e+02 Score=24.63 Aligned_cols=68 Identities=10% Similarity=0.023 Sum_probs=42.5
Q ss_pred EEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHH
Q 008205 167 NVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGL 236 (574)
Q Consensus 167 ~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~ 236 (574)
+|+||.... ......+...+.+++.|+....+. .+.+...+.+...++++...+.++||.....+.+.
T Consensus 2 ~V~Ii~gs~-SD~~~~~~a~~~L~~~gi~~~~~V-~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~L 69 (150)
T PF00731_consen 2 KVAIIMGST-SDLPIAEEAAKTLEEFGIPYEVRV-ASAHRTPERLLEFVKEYEARGADVIIAVAGMSAAL 69 (150)
T ss_dssp EEEEEESSG-GGHHHHHHHHHHHHHTT-EEEEEE---TTTSHHHHHHHHHHTTTTTESEEEEEEESS--H
T ss_pred eEEEEeCCH-HHHHHHHHHHHHHHHcCCCEEEEE-EeccCCHHHHHHHHHHhccCCCEEEEEECCCcccc
Confidence 577777443 224467888888999897665442 34334566677788888777888888875544433
No 365
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.48 E-value=1.4e+02 Score=28.04 Aligned_cols=77 Identities=10% Similarity=-0.052 Sum_probs=47.4
Q ss_pred EEEEEEc---CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC-hHHHHHHHHHHH
Q 008205 168 VIALYVD---DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNAAK 243 (574)
Q Consensus 168 v~ii~~~---~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-~~~~~~il~~a~ 243 (574)
|++|..+ ++|+....+.+.+.+++.|+.+.... ...+.......++.+...+.+.||+... .+.....++++.
T Consensus 2 i~vi~p~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~l~~~~ 78 (275)
T cd06317 2 IGYTQNNVGSHSYQTTYNKAFQAAAEEDGVEVIVLD---ANGDVARQAAQVEDLIAQKVDGIILWPTDGQAYIPGLRKAK 78 (275)
T ss_pred eEEEecccCCCHHHHHHHHHHHHHHHhcCCEEEEEc---CCcCHHHHHHHHHHHHHcCCCEEEEecCCccccHHHHHHHH
Confidence 4555543 35666677788888888888776532 1123344455666666678888877643 333345667777
Q ss_pred HCCC
Q 008205 244 HLRM 247 (574)
Q Consensus 244 ~~gm 247 (574)
+.+.
T Consensus 79 ~~~i 82 (275)
T cd06317 79 QAGI 82 (275)
T ss_pred HCCC
Confidence 7654
No 366
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=38.26 E-value=2.4e+02 Score=24.54 Aligned_cols=79 Identities=15% Similarity=0.050 Sum_probs=47.8
Q ss_pred CCeEEEEEEEcCCCC---cchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhh-cCCCeEEEEEeCh-----HH
Q 008205 164 GWRNVIALYVDDDHG---RNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVS-SMMSRILILHTYD-----IW 234 (574)
Q Consensus 164 ~W~~v~ii~~~~~~g---~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik-~~~~~viil~~~~-----~~ 234 (574)
..-++++|...|+-+ ......+...+++.|..+.....++ .+...+.+.+++.. ..+.++||..+.. +.
T Consensus 3 ~~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv~--Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~ 80 (163)
T TIGR02667 3 IPLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIVK--DDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDV 80 (163)
T ss_pred CccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEcC--CCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCC
Confidence 345777776554322 1234567777888898877666565 35566777777764 2468888876432 33
Q ss_pred HHHHHHHHHH
Q 008205 235 GLEVLNAAKH 244 (574)
Q Consensus 235 ~~~il~~a~~ 244 (574)
+...+..+.+
T Consensus 81 t~eal~~l~~ 90 (163)
T TIGR02667 81 TPEALEPLFD 90 (163)
T ss_pred cHHHHHHHHC
Confidence 4555555433
No 367
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=38.13 E-value=4.1e+02 Score=26.26 Aligned_cols=119 Identities=18% Similarity=0.109 Sum_probs=68.9
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc--C-cEEEEcCCChHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN--E-TVAIIGPQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~--~-v~aiiGp~~s~~ 109 (574)
+||++.... ...+..-..++.-|+++.+-.. . ...+.....+...+.+.+.+++.. . +.||+...+.-.
T Consensus 177 ~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~------~-~~~i~~~~~~~~~g~~~~~~ll~~~~~~ptAif~~nD~~A 249 (333)
T COG1609 177 RIAFIGGPLDSSASRERLEGYRAALREAGLPI------N-PEWIVEGDFSEESGYEAAERLLARGEPRPTAIFCANDLMA 249 (333)
T ss_pred eEEEEeCCCccccHhHHHHHHHHHHHHCCCCC------C-cceEEecCCChHHHHHHHHHHHhcCCCCCcEEEEcCcHHH
Confidence 577777663 3344566788888887743221 0 333333334666777777888865 3 889997555544
Q ss_pred HHHHHHhhcc--CCccE-EecccCCC-CcCCCCCCceEEecCChHHHHHHHHHHH
Q 008205 110 AHLVSHIANE--FQVPL-LSFAATDP-SLSSLQYPFFVRTTQSDLYQMAAIADIV 160 (574)
Q Consensus 110 ~~~va~~~~~--~~iP~-Is~~~~~~-~ls~~~~~~~~r~~ps~~~~~~ai~~ll 160 (574)
...+ ..+.+ ..||. |+..+.+. .+..-..|-+-.+..+....++..+++|
T Consensus 250 lg~l-~~~~~~g~~vP~disviGfDd~~~~~~~~P~LTTv~~~~~~~G~~A~~~L 303 (333)
T COG1609 250 LGAL-RALRELGLRVPEDLSVIGFDDIELARFLTPPLTTVRQPIEELGRRAAELL 303 (333)
T ss_pred HHHH-HHHHHcCCCCCCeeEEEEecChhhhhhCCCCCeeecCCHHHHHHHHHHHH
Confidence 4444 33333 34674 55544443 2222234666777777777777766654
No 368
>PF13362 Toprim_3: Toprim domain
Probab=37.92 E-value=1.2e+02 Score=23.48 Aligned_cols=51 Identities=20% Similarity=0.171 Sum_probs=37.6
Q ss_pred CCeEEEEEEEcCCC--CcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHH
Q 008205 164 GWRNVIALYVDDDH--GRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLT 217 (574)
Q Consensus 164 ~W~~v~ii~~~~~~--g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ 217 (574)
.++++.|..++|.. |......+.+.+.+.|..+..... .....|+.+.++.
T Consensus 40 ~~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~~~p---~~~g~D~ND~l~~ 92 (96)
T PF13362_consen 40 PGRRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSIVEP---GPEGKDWNDLLQA 92 (96)
T ss_pred CCCeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEEECC---CCCCchHHHHHHh
Confidence 67889888877777 888889999999999987765432 1234578777765
No 369
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.89 E-value=1.6e+02 Score=27.63 Aligned_cols=75 Identities=9% Similarity=-0.014 Sum_probs=42.8
Q ss_pred EEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHC
Q 008205 168 VIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHL 245 (574)
Q Consensus 168 v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~ 245 (574)
++++..+ ++|.....+.+.+.+++.|+++.....- .+.......++.+...+.+.||+...... ...++.+.+.
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~i~~l~~~~~dgiii~~~~~~-~~~~~~~~~~ 77 (270)
T cd06296 2 IGLVFPDLDSPWASEVLRGVEEAAAAAGYDVVLSESG---RRTSPERQWVERLSARRTDGVILVTPELT-SAQRAALRRT 77 (270)
T ss_pred eEEEECCCCCccHHHHHHHHHHHHHHcCCeEEEecCC---CchHHHHHHHHHHHHcCCCEEEEecCCCC-hHHHHHHhcC
Confidence 4555533 4566677778888888888776543211 22233445666776777777766533212 1335666554
Q ss_pred C
Q 008205 246 R 246 (574)
Q Consensus 246 g 246 (574)
+
T Consensus 78 ~ 78 (270)
T cd06296 78 G 78 (270)
T ss_pred C
Confidence 4
No 370
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.77 E-value=1.3e+02 Score=28.53 Aligned_cols=69 Identities=7% Similarity=-0.116 Sum_probs=45.4
Q ss_pred CCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC-hHHHHHHHHHHHHCCC
Q 008205 176 DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNAAKHLRM 247 (574)
Q Consensus 176 ~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-~~~~~~il~~a~~~gm 247 (574)
+|.......+.+.+++.|+.+..... ..+.......++.+...+.+.||+... .......++++.+.|.
T Consensus 12 ~f~~~~~~gi~~~~~~~G~~~~~~~~---~~d~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~i~~~~~~~i 81 (272)
T cd06313 12 TWCAQGKQAADEAGKLLGVDVTWYGG---ALDAVKQVAAIENMASQGWDFIAVDPLGIGTLTEAVQKAIARGI 81 (272)
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEecC---CCCHHHHHHHHHHHHHcCCCEEEEcCCChHHhHHHHHHHHHCCC
Confidence 45556677888888888988765422 123444556777777778888888643 3445566777777654
No 371
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=37.75 E-value=1.6e+02 Score=27.34 Aligned_cols=75 Identities=16% Similarity=0.037 Sum_probs=43.7
Q ss_pred EEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHC
Q 008205 168 VIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHL 245 (574)
Q Consensus 168 v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~ 245 (574)
|+++..+ +.+.....+.+++.+++.|+++..... ..+.......++++...+.+.+|+..... ...++..+.+.
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~~dgii~~~~~~-~~~~~~~~~~~ 77 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYENGYQMLLMNT---NFSIEKEIEALELLARQKVDGIILLATTI-TDEHREAIKKL 77 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHhcCCCEEEEeCCCC-CHHHHHHHhcC
Confidence 4555543 334456677888888888887754321 12334445667777777888888764322 12345555554
Q ss_pred C
Q 008205 246 R 246 (574)
Q Consensus 246 g 246 (574)
|
T Consensus 78 ~ 78 (259)
T cd01542 78 N 78 (259)
T ss_pred C
Confidence 4
No 372
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.47 E-value=1.4e+02 Score=28.11 Aligned_cols=77 Identities=12% Similarity=0.019 Sum_probs=45.9
Q ss_pred EEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC-hHHHHHHHHHHHH
Q 008205 168 VIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNAAKH 244 (574)
Q Consensus 168 v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-~~~~~~il~~a~~ 244 (574)
+++|..+ +.|.......+.+.+++.|+.+... ....+.......++++...+.+.||+... .......+..+.+
T Consensus 2 i~vi~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~---~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~l~~~~~ 78 (277)
T cd06319 2 IAYIVSDLRIPFWQIMGRGVKSKAKALGYDAVEL---SAENSAKKELENLRTAIDKGVSGIIISPTNSSAAVTLLKLAAQ 78 (277)
T ss_pred eEEEeCCCCchHHHHHHHHHHHHHHhcCCeEEEe---cCCCCHHHHHHHHHHHHhcCCCEEEEcCCchhhhHHHHHHHHH
Confidence 5555543 4555666778888888888877542 21123333446666666678888877543 2223456677766
Q ss_pred CCC
Q 008205 245 LRM 247 (574)
Q Consensus 245 ~gm 247 (574)
.|.
T Consensus 79 ~~i 81 (277)
T cd06319 79 AKI 81 (277)
T ss_pred CCC
Confidence 553
No 373
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=37.47 E-value=1.4e+02 Score=27.93 Aligned_cols=77 Identities=8% Similarity=-0.016 Sum_probs=46.6
Q ss_pred EEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh-HHHHHHHHHHHH
Q 008205 168 VIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEVLNAAKH 244 (574)
Q Consensus 168 v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~-~~~~~il~~a~~ 244 (574)
+++|..+ +.+.....+.+.+.+++.|+.+... ....+..+....++++...+.+.||+.... ......+.++.+
T Consensus 2 I~vv~~~~~~~~~~~~~~~i~~~~~~~g~~v~~~---~~~~~~~~~~~~~~~~~~~~~dgii~~~~~~~~~~~~l~~l~~ 78 (268)
T cd06323 2 IGLSVSTLNNPFFVTLKDGAQKEAKELGYELTVL---DAQNDAAKQLNDIEDLITRGVDAIIINPTDSDAVVPAVKAANE 78 (268)
T ss_pred eeEecccccCHHHHHHHHHHHHHHHHcCceEEec---CCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHH
Confidence 4455533 4456667788888888888877542 212234445567777777778877775322 223456666666
Q ss_pred CCC
Q 008205 245 LRM 247 (574)
Q Consensus 245 ~gm 247 (574)
.+.
T Consensus 79 ~~i 81 (268)
T cd06323 79 AGI 81 (268)
T ss_pred CCC
Confidence 553
No 374
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.36 E-value=1.3e+02 Score=28.80 Aligned_cols=79 Identities=9% Similarity=0.055 Sum_probs=46.0
Q ss_pred EEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC-hHHHHHHHHHHH
Q 008205 167 NVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNAAK 243 (574)
Q Consensus 167 ~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-~~~~~~il~~a~ 243 (574)
|+++|..+ +.+.......+.+.+++.|+.+... .....+.......++.+...+.+.||+... ......+++++.
T Consensus 1 ~i~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~l~~~~~~~~dgiii~~~~~~~~~~~i~~~~ 78 (294)
T cd06316 1 KAAIVMHTSGSDWSNAQVRGAKDEFAKLGIEVVAT--TDAQFDPAKQVADIETTISQKPDIIISIPVDPVSTAAAYKKVA 78 (294)
T ss_pred CeEEEecCCCChHHHHHHHHHHHHHHHcCCEEEEe--cCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCchhhhHHHHHHH
Confidence 35666543 2344456667788888888876532 111123334456666666677887777533 233456677777
Q ss_pred HCCC
Q 008205 244 HLRM 247 (574)
Q Consensus 244 ~~gm 247 (574)
+.|.
T Consensus 79 ~~~i 82 (294)
T cd06316 79 EAGI 82 (294)
T ss_pred HcCC
Confidence 7664
No 375
>PRK09701 D-allose transporter subunit; Provisional
Probab=36.92 E-value=2.1e+02 Score=27.86 Aligned_cols=84 Identities=6% Similarity=-0.025 Sum_probs=54.2
Q ss_pred cCCeEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh-HHHHHHH
Q 008205 163 FGWRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEVL 239 (574)
Q Consensus 163 ~~W~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~-~~~~~il 239 (574)
+--.+++++..+ +.+.....+.+.+.+++.|+.+.... .+...+.......++.+...+.+.||+.... ......+
T Consensus 22 ~~~~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~v~~~~-~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l 100 (311)
T PRK09701 22 FAAAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFA-SPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPV 100 (311)
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHHHHHHcCCeEEEec-CCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHH
Confidence 445689999864 45666778888899999998876432 1111233344566777777788888887533 3333446
Q ss_pred HHHHHCCC
Q 008205 240 NAAKHLRM 247 (574)
Q Consensus 240 ~~a~~~gm 247 (574)
.++.+.|+
T Consensus 101 ~~~~~~gi 108 (311)
T PRK09701 101 ARAWKKGI 108 (311)
T ss_pred HHHHHCCC
Confidence 66666664
No 376
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.91 E-value=1.6e+02 Score=27.35 Aligned_cols=75 Identities=9% Similarity=0.032 Sum_probs=43.4
Q ss_pred EEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHC
Q 008205 168 VIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHL 245 (574)
Q Consensus 168 v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~ 245 (574)
++++..+ +.+.....+.+.+.+++.|+.+.... .. .+. +....++.+...+.+.||+...... ...++.+.+.
T Consensus 2 I~~i~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~-~~--~~~-~~~~~i~~~~~~~vdgiii~~~~~~-~~~~~~~~~~ 76 (266)
T cd06278 2 IGVVVADLDNPFYSELLEALSRALQARGYQPLLIN-TD--DDE-DLDAALRQLLQYRVDGVIVTSGTLS-SELAEECRRN 76 (266)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHCCCeEEEEc-CC--CCH-HHHHHHHHHHHcCCCEEEEecCCCC-HHHHHHHhhc
Confidence 3455533 45556667778888888888765432 11 122 4556677777777777777543222 2346666665
Q ss_pred CC
Q 008205 246 RM 247 (574)
Q Consensus 246 gm 247 (574)
|.
T Consensus 77 ~i 78 (266)
T cd06278 77 GI 78 (266)
T ss_pred CC
Confidence 53
No 377
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.83 E-value=1.9e+02 Score=26.99 Aligned_cols=75 Identities=11% Similarity=-0.051 Sum_probs=45.5
Q ss_pred EEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHC
Q 008205 168 VIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHL 245 (574)
Q Consensus 168 v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~ 245 (574)
|+++..+ +++.....+.+.+.+++.|..+.... ...+.....+.++.+...+.+.||+....... ..++++.+.
T Consensus 2 igvi~p~~~~~~~~~~~~gi~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~-~~~~~~~~~ 77 (265)
T cd06285 2 IGVLVPRLTDTVMATMYEGIEEAAAERGYSTFVAN---TGDNPDAQRRAIEMLLDRRVDGLILGDARSDD-HFLDELTRR 77 (265)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHHCCCEEEEEe---CCCCHHHHHHHHHHHHHcCCCEEEEecCCCCh-HHHHHHHHc
Confidence 4566654 45666677888888888888764321 11233345566777777788877776433222 346666665
Q ss_pred C
Q 008205 246 R 246 (574)
Q Consensus 246 g 246 (574)
+
T Consensus 78 ~ 78 (265)
T cd06285 78 G 78 (265)
T ss_pred C
Confidence 5
No 378
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.
Probab=36.68 E-value=52 Score=31.66 Aligned_cols=36 Identities=8% Similarity=-0.169 Sum_probs=30.3
Q ss_pred HHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhcccccc
Q 008205 502 VFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKR 545 (574)
Q Consensus 502 l~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~ 545 (574)
+.+.+++.+|.+ .+++... +|+.++..|..|++|++
T Consensus 49 l~~~l~~~~g~~--v~~~~~~------~~~~~~~al~~g~~D~~ 84 (288)
T TIGR03431 49 LADYLSKKLGVK--VKLFFAT------DYAGVIEGMRFGKVDIA 84 (288)
T ss_pred HHHHHHHHhCCc--EEEEeCC------CHHHHHHHHHcCCccEE
Confidence 567788889988 7765542 89999999999999999
No 379
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=36.54 E-value=1.4e+02 Score=28.97 Aligned_cols=69 Identities=12% Similarity=0.015 Sum_probs=34.8
Q ss_pred CCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCC
Q 008205 176 DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRM 247 (574)
Q Consensus 176 ~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm 247 (574)
.|.....+.+++.+++.|+.+..... ..+.......++.+... +.+.||+.........+++.+.+.|+
T Consensus 13 ~~~~~~~~gi~~~~~~~g~~v~~~~~---~~~~~~~~~~i~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~gi 83 (305)
T cd06324 13 PFWNSVARFMQAAADDLGIELEVLYA---ERDRFLMLQQARTILQRPDKPDALIFTNEKSVAPELLRLAEGAGV 83 (305)
T ss_pred cHHHHHHHHHHHHHHhcCCeEEEEeC---CCCHHHHHHHHHHHHHhccCCCEEEEcCCccchHHHHHHHHhCCC
Confidence 34445556666667677766544321 11223334455555555 66666664322223344555555543
No 380
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=36.39 E-value=1.5e+02 Score=27.92 Aligned_cols=77 Identities=8% Similarity=-0.024 Sum_probs=45.6
Q ss_pred EEEEEEc--CCCCcchHHHHHHHHhh--cCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh-HHHHHHHHHH
Q 008205 168 VIALYVD--DDHGRNGIAALGDKLAE--KRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEVLNAA 242 (574)
Q Consensus 168 v~ii~~~--~~~g~~~~~~l~~~~~~--~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~-~~~~~il~~a 242 (574)
|+++..+ +.|.......+.+.+++ .|..+... ....+.......++.+...+.+.||+.... +.....++.+
T Consensus 2 Ig~v~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~dgiIi~~~~~~~~~~~i~~~ 78 (271)
T cd06321 2 IGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVTVV---SADYDLNKQVSQIDNFIAAKVDLILLNAVDSKGIAPAVKRA 78 (271)
T ss_pred eEEEecccCCHHHHHHHHHHHHHHHHhCCCeEEEEc---cCCCCHHHHHHHHHHHHHhCCCEEEEeCCChhHhHHHHHHH
Confidence 5666643 45666677888888888 66655432 111233344566666667778877776432 2235566777
Q ss_pred HHCCC
Q 008205 243 KHLRM 247 (574)
Q Consensus 243 ~~~gm 247 (574)
.+.|.
T Consensus 79 ~~~~i 83 (271)
T cd06321 79 QAAGI 83 (271)
T ss_pred HHCCC
Confidence 66553
No 381
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=36.20 E-value=1.5e+02 Score=24.94 Aligned_cols=47 Identities=19% Similarity=0.190 Sum_probs=34.8
Q ss_pred HHHHHHHHHHcCCe---EEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEE
Q 008205 153 MAAIADIVDYFGWR---NVIALYVDDDHGRNGIAALGDKLAEKRCRLSHK 199 (574)
Q Consensus 153 ~~ai~~ll~~~~W~---~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~ 199 (574)
...+..+++..... .+.++++|+..|....+.+++.+++.|..+...
T Consensus 7 lnsl~~~~~~~~~~~~~~~~Ll~SDT~~G~~~a~il~~~l~~~g~~v~~~ 56 (136)
T PF09651_consen 7 LNSLVRLLEKGKDDDKDEVVLLHSDTPDGRLCAEILKEYLEEKGINVEVV 56 (136)
T ss_dssp HHHHHHHHHHHT--GGGEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHhCccccCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 45566666555442 799999999999999999999999998876554
No 382
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=36.12 E-value=1.8e+02 Score=26.91 Aligned_cols=77 Identities=17% Similarity=0.102 Sum_probs=44.6
Q ss_pred CCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHH
Q 008205 164 GWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAK 243 (574)
Q Consensus 164 ~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~ 243 (574)
..+++.++..+. ....+.+.+++.|..+.....+.......+....++.+...+.+ +|++.++..+..+++.+.
T Consensus 124 ~~~~ili~~~~~-----~~~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d-~ivftS~~~v~~~~~~~~ 197 (249)
T PRK05928 124 KGKRVLYLRGNG-----GREVLGDTLEERGAEVDECEVYERVPPKLDGAELLARLQSGEVD-AVIFTSPSTVRAFFSLAP 197 (249)
T ss_pred CCCEEEEECCCC-----CHHHHHHHHHHCCCEEeEEEEEEeeCCCCChHHHHHHHHhCCCC-EEEECCHHHHHHHHHHhc
Confidence 456777765433 35778888888887765443332211112223334444444555 556667888888888776
Q ss_pred HCC
Q 008205 244 HLR 246 (574)
Q Consensus 244 ~~g 246 (574)
+.+
T Consensus 198 ~~~ 200 (249)
T PRK05928 198 ELG 200 (249)
T ss_pred ccc
Confidence 554
No 383
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=35.83 E-value=99 Score=30.08 Aligned_cols=40 Identities=15% Similarity=0.089 Sum_probs=20.3
Q ss_pred EEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHH
Q 008205 196 LSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGL 236 (574)
Q Consensus 196 v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~ 236 (574)
|...-.+|+....+.|.++++.+++.+.+ ++++++.+...
T Consensus 133 VvlsGSlP~g~~~d~y~~li~~~~~~g~~-vilD~Sg~~L~ 172 (310)
T COG1105 133 VVLSGSLPPGVPPDAYAELIRILRQQGAK-VILDTSGEALL 172 (310)
T ss_pred EEEeCCCCCCCCHHHHHHHHHHHHhcCCe-EEEECChHHHH
Confidence 33344455544555555666655555444 44555554433
No 384
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=35.69 E-value=3.5e+02 Score=25.68 Aligned_cols=87 Identities=15% Similarity=0.041 Sum_probs=58.6
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC--
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-- 231 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-- 231 (574)
..++.-....|-.=+.++++.. +.....+.++..-+...+.|.....+. ..+ ++......+++.|.+.+.
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~-~f~g~~~~l~~v~~~v~iPvl~kdfi~-----~~~--qi~~a~~~GAD~VlLi~~~l 144 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDER-FFQGSLEYLRAARAAVSLPVLRKDFII-----DPY--QIYEARAAGADAILLIVAAL 144 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccc-cCCCCHHHHHHHHHhcCCCEEeeeecC-----CHH--HHHHHHHcCCCEEEEEeccC
Confidence 4556666667887788887554 444446666665555566666433221 122 678888899999999864
Q ss_pred -hHHHHHHHHHHHHCCCC
Q 008205 232 -DIWGLEVLNAAKHLRMM 248 (574)
Q Consensus 232 -~~~~~~il~~a~~~gm~ 248 (574)
......+++.+.++||.
T Consensus 145 ~~~~l~~li~~a~~lGl~ 162 (260)
T PRK00278 145 DDEQLKELLDYAHSLGLD 162 (260)
T ss_pred CHHHHHHHHHHHHHcCCe
Confidence 36788999999999874
No 385
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=35.35 E-value=2.7e+02 Score=27.14 Aligned_cols=79 Identities=10% Similarity=-0.062 Sum_probs=47.2
Q ss_pred CeEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHH
Q 008205 165 WRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAA 242 (574)
Q Consensus 165 W~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a 242 (574)
-+.++++..+ +.+.......+.+.+.+.|..+..... . .+.......++.+...+.+.||+..........+.++
T Consensus 60 ~~~Igvi~~~~~~~~~~~~~~~i~~~~~~~gy~~~i~~~-~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l 136 (327)
T TIGR02417 60 SRTIGLVIPDLENYSYARIAKELEQQCREAGYQLLIACS-D--DNPDQEKVVIENLLARQVDALIVASCMPPEDAYYQKL 136 (327)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHHCCCEEEEEeC-C--CCHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHH
Confidence 3578887753 445566778888888888988764322 1 2233344566667667778777764322123445555
Q ss_pred HHCC
Q 008205 243 KHLR 246 (574)
Q Consensus 243 ~~~g 246 (574)
.+.+
T Consensus 137 ~~~~ 140 (327)
T TIGR02417 137 QNEG 140 (327)
T ss_pred HhcC
Confidence 5554
No 386
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=35.17 E-value=2e+02 Score=26.89 Aligned_cols=76 Identities=11% Similarity=-0.060 Sum_probs=44.9
Q ss_pred EEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHC
Q 008205 168 VIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHL 245 (574)
Q Consensus 168 v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~ 245 (574)
++++..+ +.+.......+.+.+++.|..+..... . .+.....+.++.+...+.+.|++........ .++++.+.
T Consensus 2 igvi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~--~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~-~~~~~~~~ 77 (264)
T cd06274 2 IGLIIPDLENRSFARIAKRLEALARERGYQLLIACS-D--DDPETERETVETLIARQVDALIVAGSLPPDD-PYYLCQKA 77 (264)
T ss_pred EEEEeccccCchHHHHHHHHHHHHHHCCCEEEEEeC-C--CCHHHHHHHHHHHHHcCCCEEEEcCCCCchH-HHHHHHhc
Confidence 4455533 455566677888888888887765422 1 2334445677777778888888764322222 25556555
Q ss_pred CC
Q 008205 246 RM 247 (574)
Q Consensus 246 gm 247 (574)
|.
T Consensus 78 ~i 79 (264)
T cd06274 78 GL 79 (264)
T ss_pred CC
Confidence 53
No 387
>PRK08286 cbiC cobalt-precorrin-8X methylmutase; Validated
Probab=35.16 E-value=70 Score=29.19 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHhHhcC---cEEEEc-CCChHHHHHHHHhhccCCccEEecc
Q 008205 81 YSRFLGMVEALTLLENE---TVAIIG-PQFSVIAHLVSHIANEFQVPLLSFA 128 (574)
Q Consensus 81 ~~~~~a~~~~~~l~~~~---v~aiiG-p~~s~~~~~va~~~~~~~iP~Is~~ 128 (574)
++..+|+-.+|+++.+| ...||| |..---+......+...+||+|+.-
T Consensus 139 GNAPTAL~~l~~li~~g~~~PalVIG~PVGFV~AaEsKe~L~~~~iP~It~~ 190 (214)
T PRK08286 139 GNAPTALFRLLEMVEHGQLQVDAVVGVPVGFVGAAESKEALTESDLPAIAAL 190 (214)
T ss_pred eCcHHHHHHHHHHHHcCCCCCcEEEEeCCccccHHHHHHHHHhCCCCEEEEe
Confidence 57888999999999874 888888 3332222222333345689999853
No 388
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=35.10 E-value=3.8e+02 Score=25.09 Aligned_cols=115 Identities=13% Similarity=0.083 Sum_probs=60.1
Q ss_pred CeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHH
Q 008205 31 PVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIA 110 (574)
Q Consensus 31 ~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~ 110 (574)
+.=+||++.+.....+.....+++-++++. |.++...... +.....+.+.+++. +..+|+.+......
T Consensus 130 g~~~i~~l~~~~~~~~~~r~~g~~~~~~~~--------g~~~~~~~~~---~~~~~~~~~~~~~~-~~dai~~~~d~~a~ 197 (281)
T cd06325 130 DAKTVGVLYNPSEANSVVQVKELKKAAAKL--------GIEVVEATVS---SSNDVQQAAQSLAG-KVDAIYVPTDNTVA 197 (281)
T ss_pred CCcEEEEEeCCCCccHHHHHHHHHHHHHhC--------CCEEEEEecC---CHHHHHHHHHHhcc-cCCEEEEcCchhHH
Confidence 445688886544333444456666666541 3444332211 22223334444443 45788876655433
Q ss_pred HHHH---HhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHH
Q 008205 111 HLVS---HIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDY 162 (574)
Q Consensus 111 ~~va---~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~ 162 (574)
..+. ......+||++++.... +. .|.+.....+...+++..++++.+
T Consensus 198 ~~~~~~~~~~~~~~ipvig~d~~~--~~---~~~l~tv~~~~~~~G~~a~~~l~~ 247 (281)
T cd06325 198 SAMEAVVKVANEAKIPVIASDDDM--VK---RGGLATYGIDYYELGRQTGKMAAK 247 (281)
T ss_pred hHHHHHHHHHHHcCCCEEEcCHHH--Hh---CCceEEecCCHHHHHHHHHHHHHH
Confidence 3332 22223589999864331 22 255666666777777777776543
No 389
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=35.09 E-value=3.7e+02 Score=29.03 Aligned_cols=99 Identities=13% Similarity=0.060 Sum_probs=60.9
Q ss_pred HHHHHHHHHc-CCeEEEEEEEcCCCCcchHHHHHHHHhhcCc-EEEEEeecCCCC--ChhhHHHHHHHhhcCCCeEEEEE
Q 008205 154 AAIADIVDYF-GWRNVIALYVDDDHGRNGIAALGDKLAEKRC-RLSHKVPLSPKG--SRNQIIDTLLTVSSMMSRILILH 229 (574)
Q Consensus 154 ~ai~~ll~~~-~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~-~v~~~~~~~~~~--~~~~~~~~l~~ik~~~~~viil~ 229 (574)
+|+..+.+.. +-+++.|+.+-|..|.....-+...+++.|. .+.+. +|... +-.=-...++++.+.+.+.||..
T Consensus 57 ~a~~ri~~ai~~~e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~~--IP~R~~eGYGl~~~~i~~~~~~~~~LiItv 134 (575)
T PRK11070 57 KAVELLYNALREGTRIIVVGDFDADGATSTALSVLALRSLGCSNVDYL--VPNRFEDGYGLSPEVVDQAHARGAQLIVTV 134 (575)
T ss_pred HHHHHHHHHHHCCCEEEEEEecCccHHHHHHHHHHHHHHcCCCceEEE--eCCCCcCCCCCCHHHHHHHHhcCCCEEEEE
Confidence 4444443332 3468888887788898888889999998887 45442 34211 10111245666666677766665
Q ss_pred eChHHHHHHHHHHHHCCCCCCCeEEEEeCc
Q 008205 230 TYDIWGLEVLNAAKHLRMMESGYVWIVTDW 259 (574)
Q Consensus 230 ~~~~~~~~il~~a~~~gm~~~~~~~i~~~~ 259 (574)
-.+..+..-+..|+++|+. .|+++.
T Consensus 135 D~Gi~~~e~i~~a~~~gid-----vIVtDH 159 (575)
T PRK11070 135 DNGISSHAGVAHAHALGIP-----VLVTDH 159 (575)
T ss_pred cCCcCCHHHHHHHHHCCCC-----EEEECC
Confidence 4444456667778888874 466653
No 390
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=34.95 E-value=4.8e+02 Score=26.15 Aligned_cols=138 Identities=14% Similarity=0.129 Sum_probs=70.8
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEE--cCCC-hHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAII--GPQF-SVIA 110 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii--Gp~~-s~~~ 110 (574)
.++.+|-..+ -+.+.+|..|+.++ +|..+.+...++.-.--+.++-..+.++.-+.+|+ -|.. ....
T Consensus 44 ~v~~lF~epS---TRTR~SFE~A~~~L-------Gg~~i~l~~~~s~~~kgEsl~Dtarvls~y~D~Iv~R~~~~~~~~~ 113 (357)
T TIGR03316 44 LGISLFRDNS---TRTRFSFASAMNLL-------GLHAQDLDEGKSQIGHGETVRETAEMISFFADGIGIRDDMYIGVGN 113 (357)
T ss_pred EEEEEEcCCC---cchHHHHHHHHHHc-------CCcEEEeCCccccCCCCCCHHHHHHHHHHhCcEEEEeCCCcccccc
Confidence 4677776654 36789999999875 45555554333221112233333344444222222 2221 0111
Q ss_pred HHHHHhhcc-----------CCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcCC------eEEEE
Q 008205 111 HLVSHIANE-----------FQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFGW------RNVIA 170 (574)
Q Consensus 111 ~~va~~~~~-----------~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~W------~~v~i 170 (574)
..+..++.. ..||+|.-. + +.. +| .++++|++ ++||. .+|++
T Consensus 114 ~~l~~~a~~~~~~~~~~~~~s~vPVINa~-~-----~~~-------HP-----tQaLaDl~Ti~e~~G~~~~l~g~kvai 175 (357)
T TIGR03316 114 AYMREVAKYVQEGYKDGVLEQRPPLVNLQ-C-----DID-------HP-----TQAMADIMTLQEKFGGIENLKGKKFAM 175 (357)
T ss_pred HHHHHHHHhhhhccccccccCCCCEEECC-C-----CCC-------Cc-----hHHHHHHHHHHHHhCCccccCCCEEEE
Confidence 223334444 579999842 1 112 22 26777763 56774 37888
Q ss_pred EEEcC-CCCc--chHHHHHHHHhhcCcEEEEE
Q 008205 171 LYVDD-DHGR--NGIAALGDKLAEKRCRLSHK 199 (574)
Q Consensus 171 i~~~~-~~g~--~~~~~l~~~~~~~g~~v~~~ 199 (574)
++.-+ .+|. .....+...+...|..+...
T Consensus 176 ~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~ 207 (357)
T TIGR03316 176 TWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLA 207 (357)
T ss_pred EeccccccCccchHHHHHHHHHHHcCCEEEEE
Confidence 86422 2332 33455666777778776543
No 391
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=34.95 E-value=2.9e+02 Score=24.87 Aligned_cols=64 Identities=8% Similarity=-0.009 Sum_probs=41.2
Q ss_pred CeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChh-hHHHHHHHhhcCCCeEEEEEeCh
Q 008205 165 WRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRN-QIIDTLLTVSSMMSRILILHTYD 232 (574)
Q Consensus 165 W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~-~~~~~l~~ik~~~~~viil~~~~ 232 (574)
-++|+++..|. |-....+.++...+..|+.+..... ..+.. .....+++.+..+.++|+++..+
T Consensus 29 ~~~v~lis~D~-~R~ga~eQL~~~a~~l~vp~~~~~~---~~~~~~~~~~~l~~~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 29 GKKVALISADT-YRIGAVEQLKTYAEILGVPFYVART---ESDPAEIAREALEKFRKKGYDLVLIDTAG 93 (196)
T ss_dssp T--EEEEEEST-SSTHHHHHHHHHHHHHTEEEEESST---TSCHHHHHHHHHHHHHHTTSSEEEEEE-S
T ss_pred cccceeecCCC-CCccHHHHHHHHHHHhccccchhhc---chhhHHHHHHHHHHHhhcCCCEEEEecCC
Confidence 57789998665 4456788999999988877643211 11222 24456777777888999998653
No 392
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=34.79 E-value=2e+02 Score=24.78 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=44.0
Q ss_pred CCcEEEEEEecCCC--CHHHHHHHHHHhHhcCcEEEEcCC-ChHHHHHHHHhhccCCccEEecc
Q 008205 68 GGTKLKLTVHDTNY--SRFLGMVEALTLLENETVAIIGPQ-FSVIAHLVSHIANEFQVPLLSFA 128 (574)
Q Consensus 68 ~g~~l~~~~~d~~~--~~~~a~~~~~~l~~~~v~aiiGp~-~s~~~~~va~~~~~~~iP~Is~~ 128 (574)
.|-++.+.....-+ +-.+|++++.++-..++.++-|.. ....+.++..+-.+.+||+||..
T Consensus 112 RGERISvDTiPlVGEE~laEAVkAV~rLpRv~iLVLAGslMGGkIteaVk~lr~~hgI~VISL~ 175 (218)
T COG1707 112 RGERISVDTIPLVGEEELAEAVKAVARLPRVGILVLAGSLMGGKITEAVKELREEHGIPVISLN 175 (218)
T ss_pred ccceeeeecccccChHHHHHHHHHHhccccceeEEEecccccchHHHHHHHHHHhcCCeEEEec
Confidence 34566665544333 567788777777677888888754 44678899999999999999963
No 393
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=34.66 E-value=83 Score=23.02 Aligned_cols=43 Identities=7% Similarity=-0.053 Sum_probs=29.0
Q ss_pred CCCcEEEEEEe--cCCCCHHHHHHHHHHhHhc-CcEEEEcCCChHH
Q 008205 67 LGGTKLKLTVH--DTNYSRFLGMVEALTLLEN-ETVAIIGPQFSVI 109 (574)
Q Consensus 67 l~g~~l~~~~~--d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 109 (574)
+||++|.+.=. -...|+..|.+.+.+-..+ |-.||+|-.-..+
T Consensus 9 i~G~ei~yl~iv~~~~~d~d~Al~eM~e~A~~lGAnAVVGvr~d~s 54 (74)
T TIGR03884 9 IPGLQLYYLGIVSTESDNVDEIVENLREKVKAKGGMGLIAFRITCA 54 (74)
T ss_pred CCCeEEEEEEEEEEecCCHHHHHHHHHHHHHHcCCCEEEEEEEEcC
Confidence 47887755321 2233899999888877766 9999999654443
No 394
>PRK13808 adenylate kinase; Provisional
Probab=34.65 E-value=1.7e+02 Score=28.86 Aligned_cols=29 Identities=14% Similarity=0.274 Sum_probs=24.5
Q ss_pred EEEEcCCChHHHHHHHHhhccCCccEEec
Q 008205 99 VAIIGPQFSVIAHLVSHIANEFQVPLLSF 127 (574)
Q Consensus 99 ~aiiGp~~s~~~~~va~~~~~~~iP~Is~ 127 (574)
+.|+||.+|.-+..-..++..+++++|+.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 57899999877777778889999999985
No 395
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=34.63 E-value=2.3e+02 Score=26.54 Aligned_cols=77 Identities=9% Similarity=-0.118 Sum_probs=43.3
Q ss_pred EEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC-hH---HHHHHHHH
Q 008205 168 VIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DI---WGLEVLNA 241 (574)
Q Consensus 168 v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-~~---~~~~il~~ 241 (574)
+++|..+ +.+....++.+.+.+++.|+.+..... ..+.....+.++.+...+.+.+|+... .. .....+.+
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~ 78 (273)
T cd06292 2 VGLLVPELSNPIFPAFAEAIEAALAQYGYTVLLCNT---YRGGVSEADYVEDLLARGVRGVVFISSLHADTHADHSHYER 78 (273)
T ss_pred EEEEeCCCcCchHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHHcCCCEEEEeCCCCCcccchhHHHHH
Confidence 3455442 445566777888888888877654321 123334456677777777787777532 11 12234555
Q ss_pred HHHCCC
Q 008205 242 AKHLRM 247 (574)
Q Consensus 242 a~~~gm 247 (574)
+.+.|+
T Consensus 79 ~~~~~i 84 (273)
T cd06292 79 LAERGL 84 (273)
T ss_pred HHhCCC
Confidence 555543
No 396
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=34.40 E-value=1.5e+02 Score=27.87 Aligned_cols=87 Identities=16% Similarity=0.028 Sum_probs=65.7
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEE---e
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILH---T 230 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~---~ 230 (574)
..++...+++|-.=+++++ |..|..+..+.++..-....+.|-....+. + ..++..-+..+++.|++. .
T Consensus 69 ~~ia~~Ye~~GAa~iSVLT-d~~~F~Gs~e~L~~v~~~v~~PvL~KDFii---D----~yQI~~Ar~~GADavLLI~~~L 140 (254)
T COG0134 69 VEIAKAYEEGGAAAISVLT-DPKYFQGSFEDLRAVRAAVDLPVLRKDFII---D----PYQIYEARAAGADAVLLIVAAL 140 (254)
T ss_pred HHHHHHHHHhCCeEEEEec-CccccCCCHHHHHHHHHhcCCCeeeccCCC---C----HHHHHHHHHcCcccHHHHHHhc
Confidence 3477778888999999998 555777788888877777777766554332 2 246677777899988885 4
Q ss_pred ChHHHHHHHHHHHHCCCC
Q 008205 231 YDIWGLEVLNAAKHLRMM 248 (574)
Q Consensus 231 ~~~~~~~il~~a~~~gm~ 248 (574)
+.+....++..|.++||.
T Consensus 141 ~~~~l~el~~~A~~LGm~ 158 (254)
T COG0134 141 DDEQLEELVDRAHELGME 158 (254)
T ss_pred CHHHHHHHHHHHHHcCCe
Confidence 557789999999999995
No 397
>PRK04168 molybdate ABC transporter periplasmic substrate-binding protein; Provisional
Probab=34.27 E-value=1.4e+02 Score=29.61 Aligned_cols=20 Identities=5% Similarity=-0.012 Sum_probs=13.3
Q ss_pred HHHHHHhhcCCCeEEEEEeC
Q 008205 212 IDTLLTVSSMMSRILILHTY 231 (574)
Q Consensus 212 ~~~l~~ik~~~~~viil~~~ 231 (574)
...+..+...++++-|++.+
T Consensus 212 ~~~~~~v~~G~aDagivy~S 231 (334)
T PRK04168 212 VELLSLLETGNMDYAFIYKS 231 (334)
T ss_pred hhhHHHHhcCCccEEEEEee
Confidence 35566666667777777765
No 398
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=34.19 E-value=4.8e+02 Score=25.89 Aligned_cols=130 Identities=19% Similarity=0.135 Sum_probs=69.8
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEE--cCCChHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAII--GPQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii--Gp~~s~~~~ 111 (574)
.++.+|...+ -+.+.+|+.|+.++ +|..+.+...++.-.--+.++-..+.++.-+.+|+ .+ ...
T Consensus 48 ~v~~lF~epS---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~y~D~iv~R~~----~~~ 113 (334)
T PRK01713 48 NIALIFEKTS---TRTRCAFEVAAYDQ-------GAQVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGF----KQS 113 (334)
T ss_pred EEEEEeCCCC---chHHHHHHHHHHHc-------CCeEEEcCCccccCCCCcCHHHHHHHHHHhCCEEEEEcC----chH
Confidence 4788887765 36889999999875 34444432222221111222333334444233333 33 223
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcC--C--eEEEEEEEcCCCCcchHHH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG--W--RNVIALYVDDDHGRNGIAA 184 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~--W--~~v~ii~~~~~~g~~~~~~ 184 (574)
.+..++....||+|.- .+ +.. +| .++++|++ +++| + .+++++. |..+ .....
T Consensus 114 ~~~~~a~~~~vPVINa-~~-----~~~-------HP-----tQaL~Dl~Ti~e~~g~~l~gl~ia~vG-D~~~--~v~~S 172 (334)
T PRK01713 114 IVNELAEYAGVPVFNG-LT-----DEF-------HP-----TQMLADVLTMIENCDKPLSEISYVYIG-DARN--NMGNS 172 (334)
T ss_pred HHHHHHHhCCCCEEEC-CC-----CCC-------Ch-----HHHHHHHHHHHHHcCCCcCCcEEEEEC-CCcc--CHHHH
Confidence 4566677778999973 21 112 22 26777753 4565 3 3566664 2212 25666
Q ss_pred HHHHHhhcCcEEEE
Q 008205 185 LGDKLAEKRCRLSH 198 (574)
Q Consensus 185 l~~~~~~~g~~v~~ 198 (574)
+...+...|..+..
T Consensus 173 l~~~~~~~g~~v~~ 186 (334)
T PRK01713 173 LLLIGAKLGMDVRI 186 (334)
T ss_pred HHHHHHHcCCEEEE
Confidence 66777777877654
No 399
>PRK15396 murein lipoprotein; Provisional
Probab=34.13 E-value=39 Score=25.17 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHHHHHhhcccccC
Q 008205 1 MTKIYLLALVVVYNFCFSAGISMN 24 (574)
Q Consensus 1 M~~~~~~~~~~~~~~~~~~~~~~~ 24 (574)
|+|..+++..+.+++++++| |+.
T Consensus 1 m~~~kl~l~av~ls~~LLaG-CAs 23 (78)
T PRK15396 1 MNRTKLVLGAVILGSTLLAG-CSS 23 (78)
T ss_pred CchhHHHHHHHHHHHHHHHH-cCC
Confidence 77643333333333455666 643
No 400
>COG2082 CobH Precorrin isomerase [Coenzyme metabolism]
Probab=34.12 E-value=73 Score=28.90 Aligned_cols=49 Identities=22% Similarity=0.242 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHhHhc---CcEEEEc-CCChHHHHHHHHhhccCCccEEeccc
Q 008205 81 YSRFLGMVEALTLLEN---ETVAIIG-PQFSVIAHLVSHIANEFQVPLLSFAA 129 (574)
Q Consensus 81 ~~~~~a~~~~~~l~~~---~v~aiiG-p~~s~~~~~va~~~~~~~iP~Is~~~ 129 (574)
++..+|+-.+|+++++ ...+||| |..-.-+.....-+....||+|+.-+
T Consensus 135 GNAPTAL~~l~elie~~~~~palvIg~PVGFv~AaesKe~L~~~~iP~itv~G 187 (210)
T COG2082 135 GNAPTALFELLELIEEGGIKPALVIGVPVGFVGAAESKEALRESPIPYITVRG 187 (210)
T ss_pred eCCHHHHHHHHHHHHccCCCCcEEEEcCCcccchHHHHHHHHhCCCCeEEEec
Confidence 5778899999999987 4778887 44433344445556666799998643
No 401
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=34.06 E-value=2.6e+02 Score=26.97 Aligned_cols=94 Identities=7% Similarity=-0.028 Sum_probs=62.1
Q ss_pred CceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHh-
Q 008205 140 PFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTV- 218 (574)
Q Consensus 140 ~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i- 218 (574)
+++++-... +..++++.++.+.+|.+.+.+|-+.++ .+.+.+.|+..|-..+.++.- ..+ +..++.
T Consensus 162 D~vIQNgan-S~VG~~ViQlaka~GiktinvVRdR~~-----ieel~~~Lk~lGA~~ViTeee---l~~----~~~~k~~ 228 (354)
T KOG0025|consen 162 DSVIQNGAN-SGVGQAVIQLAKALGIKTINVVRDRPN-----IEELKKQLKSLGATEVITEEE---LRD----RKMKKFK 228 (354)
T ss_pred CeeeecCcc-cHHHHHHHHHHHHhCcceEEEeecCcc-----HHHHHHHHHHcCCceEecHHH---hcc----hhhhhhh
Confidence 467766654 447899999999999999999986664 788999999888654432211 011 112222
Q ss_pred -hcCCCeEEEEEeChHHHHHHHHHHHHCC
Q 008205 219 -SSMMSRILILHTYDIWGLEVLNAAKHLR 246 (574)
Q Consensus 219 -k~~~~~viil~~~~~~~~~il~~a~~~g 246 (574)
....++.-+-+.....+..+.+...+-|
T Consensus 229 ~~~~~prLalNcVGGksa~~iar~L~~Gg 257 (354)
T KOG0025|consen 229 GDNPRPRLALNCVGGKSATEIARYLERGG 257 (354)
T ss_pred ccCCCceEEEeccCchhHHHHHHHHhcCc
Confidence 2335555555566777888888887655
No 402
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=33.67 E-value=1.8e+02 Score=27.17 Aligned_cols=53 Identities=17% Similarity=0.053 Sum_probs=28.1
Q ss_pred CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe
Q 008205 175 DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT 230 (574)
Q Consensus 175 ~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~ 230 (574)
+.+.....+.+.+.+++.|+.+..... . ..........+.+...+.+.||+..
T Consensus 15 ~~~~~~~~~~i~~~~~~~g~~~~~~~~-~--~~~~~~~~~~~~~~~~~vdgiii~~ 67 (268)
T cd06271 15 DPFFAEFLSGLSEALAEHGYDLVLLPV-D--PDEDPLEVYRRLVESGLVDGVIISR 67 (268)
T ss_pred CccHHHHHHHHHHHHHHCCceEEEecC-C--CcHHHHHHHHHHHHcCCCCEEEEec
Confidence 456666677777777777877654421 1 1112222222333445567666653
No 403
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=33.48 E-value=2.1e+02 Score=26.64 Aligned_cols=75 Identities=15% Similarity=-0.019 Sum_probs=43.8
Q ss_pred EEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHC
Q 008205 168 VIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHL 245 (574)
Q Consensus 168 v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~ 245 (574)
++++..+ +.+.......+.+.+++.|..+... ....+.......++.+.+.+.+.||+..... ....++.+.+.
T Consensus 2 i~vv~p~~~~~~~~~~~~~i~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~-~~~~~~~l~~~ 77 (268)
T cd06273 2 IGAIVPTLDNAIFARVIQAFQETLAAHGYTLLVA---SSGYDLDREYAQARKLLERGVDGLALIGLDH-SPALLDLLARR 77 (268)
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEe---cCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC-CHHHHHHHHhC
Confidence 5566643 4555666778888888888877642 2112334445667777777777777654321 22445555555
Q ss_pred C
Q 008205 246 R 246 (574)
Q Consensus 246 g 246 (574)
|
T Consensus 78 ~ 78 (268)
T cd06273 78 G 78 (268)
T ss_pred C
Confidence 4
No 404
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=32.87 E-value=3.5e+02 Score=25.35 Aligned_cols=90 Identities=11% Similarity=0.028 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHcC--CeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEE
Q 008205 152 QMAAIADIVDYFG--WRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILH 229 (574)
Q Consensus 152 ~~~ai~~ll~~~~--W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~ 229 (574)
.+..+++.+..+. -+++.++..+. ....+.+.+...|+.+.....+.......+.......++..+.+ +|++
T Consensus 108 ~~~~l~~~l~~~~~~~~~vl~~~~~~-----~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d-~v~f 181 (248)
T COG1587 108 DSEGLLEELPELLKGGKRVLILRGNG-----GREVLEEKLEERGAEVREVEVYRTEPPPLDEATLIELLKLGEVD-AVVF 181 (248)
T ss_pred chHHHHHHhhhhccCCCeEEEEcCCC-----chHHHHHHHHhCCCEEEEEeeeeecCCCccHHHHHHHHHhCCCC-EEEE
Confidence 4566777666553 35777776443 34788899999999877655443322222333444556666666 5555
Q ss_pred eChHHHHHHHHHHHHCCC
Q 008205 230 TYDIWGLEVLNAAKHLRM 247 (574)
Q Consensus 230 ~~~~~~~~il~~a~~~gm 247 (574)
.++..+..++..+...+.
T Consensus 182 tS~~~v~~~~~~~~~~~~ 199 (248)
T COG1587 182 TSSSAVRALLALAPESGI 199 (248)
T ss_pred eCHHHHHHHHHHccccch
Confidence 688889999998877653
No 405
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=32.78 E-value=2.5e+02 Score=24.03 Aligned_cols=96 Identities=10% Similarity=-0.132 Sum_probs=50.7
Q ss_pred ecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCc--EEEEEeecCCCCChhhHHHHHHHhhcCC
Q 008205 145 TTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRC--RLSHKVPLSPKGSRNQIIDTLLTVSSMM 222 (574)
Q Consensus 145 ~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~--~v~~~~~~~~~~~~~~~~~~l~~ik~~~ 222 (574)
+.+.-..+++.+++.++..+...-.|+.+.-.-. .+..+...+..+. .+.....+.+..+..++...++.+....
T Consensus 23 Lt~~G~~qa~~~~~~l~~~~~~~d~i~sSp~~Ra---~qTa~~l~~~~~~~~~~~~~~~l~p~~~~~~~~~~l~~~~~~~ 99 (152)
T TIGR00249 23 LTTNGCDESRLVAQWLKGQGVEIERILVSPFVRA---EQTAEIVGDCLNLPSSAEVLEGLTPCGDIGLVSDYLEALTNEG 99 (152)
T ss_pred cCHHHHHHHHHHHHHHHhCCCCCCEEEECCcHHH---HHHHHHHHHHcCCCcceEEccCcCCCCCHHHHHHHHHHHHhcC
Confidence 4455566788888888876543333343332212 2222222222243 2332233332334455667777776544
Q ss_pred CeEEEEEeChHHHHHHHHHHH
Q 008205 223 SRILILHTYDIWGLEVLNAAK 243 (574)
Q Consensus 223 ~~viil~~~~~~~~~il~~a~ 243 (574)
.+.+++.+.......++.+..
T Consensus 100 ~~~vliVgH~P~i~~l~~~l~ 120 (152)
T TIGR00249 100 VASVLLVSHLPLVGYLVAELC 120 (152)
T ss_pred CCEEEEEeCCCCHHHHHHHHh
Confidence 556777777667777776664
No 406
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=32.27 E-value=5.2e+02 Score=25.70 Aligned_cols=131 Identities=15% Similarity=0.195 Sum_probs=72.9
Q ss_pred EEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEE--cCCChHHH
Q 008205 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAII--GPQFSVIA 110 (574)
Q Consensus 33 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii--Gp~~s~~~ 110 (574)
-.++.+|...+ -+.+.+|..|+.++ +|..+.+...++.-.--+.++-....++.-+.+|+ .+...
T Consensus 43 k~v~~lF~epS---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~Dtarvls~y~D~iviR~~~~~--- 109 (338)
T PRK02255 43 KTLGMIFEQSS---TRTRVSFETAMTQL-------GGHAQYLAPGQIQLGGHESLEDTARVLSRLVDIIMARVDRHQ--- 109 (338)
T ss_pred CEEEEEeCCCC---cchHHHHHHHHHHc-------CCeEEEeCcccccCCCCcCHHHHHHHHHHhCcEEEEecCChH---
Confidence 34888887765 36789999999885 44444443333222222333333444444333332 33222
Q ss_pred HHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHH---HHHcC----Ce--EEEEEEEcCCCCcch
Q 008205 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADI---VDYFG----WR--NVIALYVDDDHGRNG 181 (574)
Q Consensus 111 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~l---l~~~~----W~--~v~ii~~~~~~g~~~ 181 (574)
.+..++...++|+|.- .++ .. +| .++++|+ .+++| ++ +|+++.+. ...
T Consensus 110 -~~~~~a~~~~vPVINa-~~~-----~~-------HP-----tQaLaDl~Ti~e~~g~g~~l~glkv~~vGD~----~~v 166 (338)
T PRK02255 110 -TVVELAKYATVPVING-MSD-----YN-------HP-----TQELGDLFTMIEHLPEGKKLEDCKVVFVGDA----TQV 166 (338)
T ss_pred -HHHHHHHhCCCCEEEC-CCC-----CC-------Ch-----HHHHHHHHHHHHHhCCCCCCCCCEEEEECCC----chH
Confidence 2455667778999982 221 11 33 2567775 35664 33 67777532 235
Q ss_pred HHHHHHHHhhcCcEEEEE
Q 008205 182 IAALGDKLAEKRCRLSHK 199 (574)
Q Consensus 182 ~~~l~~~~~~~g~~v~~~ 199 (574)
...+...+...|..+...
T Consensus 167 ~~Sl~~~~~~~g~~v~~~ 184 (338)
T PRK02255 167 CVSLMFIATKMGMDFVHF 184 (338)
T ss_pred HHHHHHHHHhCCCEEEEE
Confidence 667777777888877654
No 407
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=32.15 E-value=3.2e+02 Score=25.13 Aligned_cols=95 Identities=8% Similarity=0.025 Sum_probs=47.7
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhc
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEK 192 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~ 192 (574)
+...+...+||++....+. ........+.+.++..+ +-.+...+-........+.+.+.+.
T Consensus 50 ~~~qA~algipl~~~~~~g----------------~~~~~~~~l~~~l~~~~---v~~vv~GdI~~~~~r~~~e~vc~~l 110 (218)
T PF01902_consen 50 IEAQAEALGIPLIEIPTSG----------------DEEDYVEDLKEALKELK---VEAVVFGDIDSEYQRNWVERVCERL 110 (218)
T ss_dssp HHHHHHHHT--EEEEEE-------------------CCCHHHHHHHHHCTC-----SEEE--TTS-HHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCCEEEEEccC----------------ccchhhHHHHHHHHHcC---CCEEEECcCCcHHHHHHHHHHHHHc
Confidence 4455667778877643211 01122356666677666 4344444544455566777777788
Q ss_pred CcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh
Q 008205 193 RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD 232 (574)
Q Consensus 193 g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~ 232 (574)
|+... .| .-..|...+++++-+.+-+.+|+..+.
T Consensus 111 Gl~~~----~P--LW~~d~~~ll~e~i~~Gf~aiIv~V~~ 144 (218)
T PF01902_consen 111 GLEAV----FP--LWGRDREELLREFIESGFEAIIVKVDA 144 (218)
T ss_dssp T-EEE-----T--TTT--HHHHHHHHHHTT-EEEEEEEES
T ss_pred CCEEE----ec--ccCCCHHHHHHHHHHCCCeEEEEEEec
Confidence 87653 23 223455677777777777777776543
No 408
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=32.07 E-value=4.4e+02 Score=24.92 Aligned_cols=87 Identities=15% Similarity=0.035 Sum_probs=57.5
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe---
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT--- 230 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~--- 230 (574)
..++.-....|-.=+++++ +..|..+..+.++..-+..++.+-....+- + .-++.+-+..+++.|++..
T Consensus 71 ~~~a~~y~~~GA~aiSVlT-e~~~F~Gs~~dL~~v~~~~~~PvL~KDFIi---d----~~QI~eA~~~GADaVLLI~~~L 142 (254)
T PF00218_consen 71 AEIAKAYEEAGAAAISVLT-EPKFFGGSLEDLRAVRKAVDLPVLRKDFII---D----PYQIYEARAAGADAVLLIAAIL 142 (254)
T ss_dssp HHHHHHHHHTT-SEEEEE---SCCCHHHHHHHHHHHHHSSS-EEEES------S----HHHHHHHHHTT-SEEEEEGGGS
T ss_pred HHHHHHHHhcCCCEEEEEC-CCCCCCCCHHHHHHHHHHhCCCcccccCCC---C----HHHHHHHHHcCCCEeehhHHhC
Confidence 4556666777889999998 444666777888777766677776654332 2 2466777788999999974
Q ss_pred ChHHHHHHHHHHHHCCCC
Q 008205 231 YDIWGLEVLNAAKHLRMM 248 (574)
Q Consensus 231 ~~~~~~~il~~a~~~gm~ 248 (574)
+.+....++..|..+||.
T Consensus 143 ~~~~l~~l~~~a~~lGle 160 (254)
T PF00218_consen 143 SDDQLEELLELAHSLGLE 160 (254)
T ss_dssp GHHHHHHHHHHHHHTT-E
T ss_pred CHHHHHHHHHHHHHcCCC
Confidence 346668999999999985
No 409
>PRK14529 adenylate kinase; Provisional
Probab=31.68 E-value=2.1e+02 Score=26.42 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=24.7
Q ss_pred EEEEcCCChHHHHHHHHhhccCCccEEec
Q 008205 99 VAIIGPQFSVIAHLVSHIANEFQVPLLSF 127 (574)
Q Consensus 99 ~aiiGp~~s~~~~~va~~~~~~~iP~Is~ 127 (574)
++++||..+.-+.....++..+++++|+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~ 31 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIES 31 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCccc
Confidence 57899999887777788899999999974
No 410
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=31.61 E-value=39 Score=27.33 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=26.5
Q ss_pred cEEEEcCCChHHHHHHHHhhccCCccEEeccc
Q 008205 98 TVAIIGPQFSVIAHLVSHIANEFQVPLLSFAA 129 (574)
Q Consensus 98 v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~ 129 (574)
+++|.||+++.=+.....+++.+++|+++...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 57899999998777778888888999998644
No 411
>PRK08105 flavodoxin; Provisional
Probab=31.38 E-value=2.2e+02 Score=24.27 Aligned_cols=81 Identities=10% Similarity=-0.091 Sum_probs=44.3
Q ss_pred eEEEEEEEcCC-CCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC-------hHHHHH
Q 008205 166 RNVIALYVDDD-HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-------DIWGLE 237 (574)
Q Consensus 166 ~~v~ii~~~~~-~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-------~~~~~~ 237 (574)
+++.|+|.... ..+...+.+.+.+.+.|..+.... . .+ +..+...+.+.+|+.++ ++++..
T Consensus 2 ~~i~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~-~------~~----~~~~~~~~~~~vi~~~sT~G~Ge~p~~~~~ 70 (149)
T PRK08105 2 AKVGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFE-D------PE----LSDWQPYQDELVLVVTSTTGQGDLPDSIVP 70 (149)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHHHhCCCceEEec-h------hh----CCchhcccCCeEEEEECCCCCCCCChhHHH
Confidence 47889985542 234567788888888887764321 1 11 11222223345555443 366778
Q ss_pred HHHHHHHC--CCCCCCeEEEEe
Q 008205 238 VLNAAKHL--RMMESGYVWIVT 257 (574)
Q Consensus 238 il~~a~~~--gm~~~~~~~i~~ 257 (574)
++..+.+. .+.+..|.-+..
T Consensus 71 f~~~l~~~~~~l~~~~~avfGl 92 (149)
T PRK08105 71 LFQALKDTAGYQPNLRYGVIAL 92 (149)
T ss_pred HHHHHHhcCcccCCCEEEEEee
Confidence 88777664 333334444443
No 412
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=31.28 E-value=5.1e+02 Score=25.30 Aligned_cols=131 Identities=20% Similarity=0.190 Sum_probs=71.3
Q ss_pred EEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEE--cCCChHHH
Q 008205 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAII--GPQFSVIA 110 (574)
Q Consensus 33 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii--Gp~~s~~~ 110 (574)
-.++.+|...+ -+.+.+|+.|..++ ++..+.+....+.-.-.+.++-....++.-+.+|+ .+..
T Consensus 44 k~v~~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~Dt~~~l~~~~D~iv~R~~~~---- 109 (304)
T PRK00779 44 KTLAMIFEKPS---TRTRVSFEVGMAQL-------GGHAIFLSPRDTQLGRGEPIEDTARVLSRYVDAIMIRTFEH---- 109 (304)
T ss_pred CEEEEEecCCC---chHHHHHHHHHHHc-------CCcEEEECcccccCCCCcCHHHHHHHHHHhCCEEEEcCCCh----
Confidence 34778887765 36889999999885 34334433222211111222333333343344433 3322
Q ss_pred HHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcC-C--eEEEEEEEcCCCCcchHHH
Q 008205 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG-W--RNVIALYVDDDHGRNGIAA 184 (574)
Q Consensus 111 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~-W--~~v~ii~~~~~~g~~~~~~ 184 (574)
..+..++...++|+|.-+ +. ...| .++++|++ +++| + .+++++.+ .+ .....
T Consensus 110 ~~~~~~a~~~~vPVINag--~~----~~HP------------tQaL~Dl~Ti~e~~g~l~gl~i~~vGd---~~-~v~~S 167 (304)
T PRK00779 110 ETLEELAEYSTVPVINGL--TD----LSHP------------CQILADLLTIYEHRGSLKGLKVAWVGD---GN-NVANS 167 (304)
T ss_pred hHHHHHHHhCCCCEEeCC--CC----CCCh------------HHHHHHHHHHHHHhCCcCCcEEEEEeC---CC-ccHHH
Confidence 345666777889999843 21 1222 26777763 4454 3 36777763 12 35666
Q ss_pred HHHHHhhcCcEEEEE
Q 008205 185 LGDKLAEKRCRLSHK 199 (574)
Q Consensus 185 l~~~~~~~g~~v~~~ 199 (574)
+...+...|..+...
T Consensus 168 l~~~l~~~g~~v~~~ 182 (304)
T PRK00779 168 LLLAAALLGFDLRVA 182 (304)
T ss_pred HHHHHHHcCCEEEEE
Confidence 667777788776543
No 413
>PLN02342 ornithine carbamoyltransferase
Probab=31.23 E-value=5.4e+02 Score=25.66 Aligned_cols=129 Identities=16% Similarity=0.120 Sum_probs=67.2
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEE--cCCChHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAII--GPQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii--Gp~~s~~~~ 111 (574)
.++.+|...+ -..+.+|+.|+.++ +|..+.+...++.-.--+.++-....++.-+.+|+ .+. . .
T Consensus 87 ~va~lF~epS---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kGESl~DTarvLs~y~D~IviR~~~-~---~ 152 (348)
T PLN02342 87 SMAMIFTKPS---MRTRVSFETGFFLL-------GGHALYLGPDDIQLGKREETRDIARVLSRYNDIIMARVFA-H---Q 152 (348)
T ss_pred EEEEEecCCC---cchHHHHHHHHHHc-------CCcEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEeCCC-h---H
Confidence 4777776654 36788888888775 34444443333221111222223333333334333 232 2 2
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcC-C--eEEEEEEEcCCCCcchHHHH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG-W--RNVIALYVDDDHGRNGIAAL 185 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~-W--~~v~ii~~~~~~g~~~~~~l 185 (574)
.+..++....+|+|.-. + +.. +| .++++|++ +++| + .+|+++.+ . ......+
T Consensus 153 ~~~~la~~~~vPVINA~--~----~~~-------HP-----tQaLaDl~Ti~e~~G~l~glkva~vGD-~---~nva~Sl 210 (348)
T PLN02342 153 DVLDLAEYSSVPVINGL--T----DYN-------HP-----CQIMADALTIIEHIGRLEGTKVVYVGD-G---NNIVHSW 210 (348)
T ss_pred HHHHHHHhCCCCEEECC--C----CCC-------Ch-----HHHHHHHHHHHHHhCCcCCCEEEEECC-C---chhHHHH
Confidence 34556667789999732 1 111 23 26677763 4554 3 46777642 1 2356666
Q ss_pred HHHHhhcCcEEEE
Q 008205 186 GDKLAEKRCRLSH 198 (574)
Q Consensus 186 ~~~~~~~g~~v~~ 198 (574)
...+...|..+..
T Consensus 211 i~~~~~~G~~v~~ 223 (348)
T PLN02342 211 LLLAAVLPFHFVC 223 (348)
T ss_pred HHHHHHcCCEEEE
Confidence 6777777876654
No 414
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=31.11 E-value=1.8e+02 Score=27.35 Aligned_cols=80 Identities=14% Similarity=-0.068 Sum_probs=46.2
Q ss_pred EEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEee-cCCCCChhhHHHHHHHhhcCCCeEEEEEeCh-HHHHHHHHHH
Q 008205 167 NVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVP-LSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEVLNAA 242 (574)
Q Consensus 167 ~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~-~~~~~~~~~~~~~l~~ik~~~~~viil~~~~-~~~~~il~~a 242 (574)
+++++..+ +.+.....+.+.+.+++.|..+..... .....+.......++.+.. +.+.+|+.... ......++++
T Consensus 1 ~ig~v~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~vdgiii~~~~~~~~~~~i~~~ 79 (275)
T cd06307 1 RLGFLLPKGSNAFYRELAAALEAAAAAFPDARIRVRIHFVESFDPAALAAALLRLGA-RSDGVALVAPDHPQVRAAVARL 79 (275)
T ss_pred CeEEEeCCCCChHHHHHHHHHHHHHhhhhccCceEEEEEccCCCHHHHHHHHHHHHh-cCCEEEEeCCCcHHHHHHHHHH
Confidence 46677754 345556677888888887754332211 1111233345566777766 88888776433 3334667777
Q ss_pred HHCCC
Q 008205 243 KHLRM 247 (574)
Q Consensus 243 ~~~gm 247 (574)
.+.|.
T Consensus 80 ~~~~i 84 (275)
T cd06307 80 AAAGV 84 (275)
T ss_pred HHCCC
Confidence 77654
No 415
>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]. It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.
Probab=30.98 E-value=3e+02 Score=25.83 Aligned_cols=46 Identities=22% Similarity=0.352 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHcCCeEEEE-EEEcC--CCCcchHHHHHHHHhhcCcEEE
Q 008205 152 QMAAIADIVDYFGWRNVIA-LYVDD--DHGRNGIAALGDKLAEKRCRLS 197 (574)
Q Consensus 152 ~~~ai~~ll~~~~W~~v~i-i~~~~--~~g~~~~~~l~~~~~~~g~~v~ 197 (574)
.+.+++++++.+|-.+|.+ ||+++ +.....+..+...+...|+.-.
T Consensus 19 ~~~~ll~li~~LGp~nv~vSIyE~~S~D~T~~~L~~L~~~L~~lgv~~~ 67 (241)
T PF11735_consen 19 WGDALLELIRFLGPENVFVSIYESGSWDGTKEALRALDAELDALGVPHS 67 (241)
T ss_pred HHHHHHHHHHHhCcCeEEEEEEeCCCCccHHHHHHHHHHHHHhCCCCeE
Confidence 4558999999999988776 77765 3445677888888888887544
No 416
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=30.74 E-value=2.3e+02 Score=26.27 Aligned_cols=60 Identities=7% Similarity=-0.018 Sum_probs=39.4
Q ss_pred EEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe
Q 008205 168 VIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT 230 (574)
Q Consensus 168 v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~ 230 (574)
++++..+ ++|.....+.+++.+++.|+.+..... ..+.......++.+...+.+.||+..
T Consensus 2 i~~i~~~~~~~~~~~i~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiii~~ 63 (260)
T cd06286 2 IGVVLPYINHPYFSQLVDGIEKAALKHGYKVVLLQT---NYDKEKELEYLELLKTKQVDGLILCS 63 (260)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC---CCChHHHHHHHHHHHHcCCCEEEEeC
Confidence 5566653 456667778888888888888765422 12333445667777777888777764
No 417
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=30.73 E-value=2.2e+02 Score=26.46 Aligned_cols=75 Identities=16% Similarity=0.009 Sum_probs=41.4
Q ss_pred EEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHC
Q 008205 168 VIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHL 245 (574)
Q Consensus 168 v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~ 245 (574)
+++|..+ +.+.......+.+.+++.|+.+..... ..+.......++.+...+.+.||+...... ...+..+.+.
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiii~~~~~~-~~~~~~~~~~ 77 (268)
T cd01575 2 VAVLVPSLSNSVFADVLQGISDVLEAAGYQLLLGNT---GYSPEREEELLRTLLSRRPAGLILTGLEHT-ERTRQLLRAA 77 (268)
T ss_pred EEEEeCCCcchhHHHHHHHHHHHHHHcCCEEEEecC---CCCchhHHHHHHHHHHcCCCEEEEeCCCCC-HHHHHHHHhc
Confidence 4555543 334455667777788888877654321 123334456677777777777777543211 2344445444
Q ss_pred C
Q 008205 246 R 246 (574)
Q Consensus 246 g 246 (574)
|
T Consensus 78 ~ 78 (268)
T cd01575 78 G 78 (268)
T ss_pred C
Confidence 4
No 418
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=30.49 E-value=2.6e+02 Score=23.67 Aligned_cols=77 Identities=14% Similarity=0.125 Sum_probs=37.4
Q ss_pred HHHHHHhHhc---CcEEEEcCC----ChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHH
Q 008205 87 MVEALTLLEN---ETVAIIGPQ----FSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADI 159 (574)
Q Consensus 87 ~~~~~~l~~~---~v~aiiGp~----~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~l 159 (574)
+..++++.++ ..+.+-|.. ....+..++.++...+||.- ..+.+ ...-+....+....++
T Consensus 26 ~~~a~~L~~~g~~~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp~~------~I~~e-------~~s~~T~ena~~~~~~ 92 (155)
T PF02698_consen 26 LDEAARLYKAGYAPRILFSGGYGHGDGRSEAEAMRDYLIELGVPEE------RIILE-------PKSTNTYENARFSKRL 92 (155)
T ss_dssp HHHHHHHHH-HHT--EEEE--SSTTHTS-HHHHHHHHHHHT---GG------GEEEE-----------SHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEECCCCCCCCCCCHHHHHHHHHHhcccchh------eeEcc-------CCCCCHHHHHHHHHHH
Confidence 3556666665 344555533 23577888898888898811 00101 0111233456677789
Q ss_pred HHHcCCeEEEEEEEcCC
Q 008205 160 VDYFGWRNVIALYVDDD 176 (574)
Q Consensus 160 l~~~~W~~v~ii~~~~~ 176 (574)
++..+|+++.+|.+...
T Consensus 93 ~~~~~~~~iilVT~~~H 109 (155)
T PF02698_consen 93 LKERGWQSIILVTSPYH 109 (155)
T ss_dssp HHT-SSS-EEEE--CCC
T ss_pred HHhhcCCeEEEECCHHH
Confidence 99999999999985553
No 419
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=30.39 E-value=61 Score=27.04 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=24.0
Q ss_pred cEEEEcCCChHHHHHHHHhhccCCccEEec
Q 008205 98 TVAIIGPQFSVIAHLVSHIANEFQVPLLSF 127 (574)
Q Consensus 98 v~aiiGp~~s~~~~~va~~~~~~~iP~Is~ 127 (574)
++.++||..+.=+..+..++...+.++|+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~ 30 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQ 30 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeH
Confidence 467899998877777788887888888874
No 420
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=30.31 E-value=3.4e+02 Score=23.64 Aligned_cols=82 Identities=20% Similarity=0.196 Sum_probs=41.4
Q ss_pred CceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCC-----CChhhHHHH
Q 008205 140 PFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPK-----GSRNQIIDT 214 (574)
Q Consensus 140 ~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~-----~~~~~~~~~ 214 (574)
+.++|-.-+.. .-..+++++|-|++..+..++. .+...+.+++.|+++.....-... ...+.+.+.
T Consensus 12 ~~vYRS~~P~~----~n~~fL~~L~LKTII~L~~e~~-----~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~a 82 (164)
T PF03162_consen 12 PGVYRSAQPTP----ANFPFLERLGLKTIINLRPEPP-----SQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEA 82 (164)
T ss_dssp TTEEEESS--H----HHHHHHHHHT-SEEEE--SS--------HHHHHHHHHTT-EEEE-------GGG----HHHHHHH
T ss_pred CCccCCCCCCh----hhHHHHHHCCCceEEEecCCCC-----CHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHH
Confidence 45777665443 3445788899999999985543 245555778889887654321111 234566677
Q ss_pred HHHhhcCCCeEEEEEe
Q 008205 215 LLTVSSMMSRILILHT 230 (574)
Q Consensus 215 l~~ik~~~~~viil~~ 230 (574)
|+.+.+....=|+++|
T Consensus 83 L~~ild~~n~PvLiHC 98 (164)
T PF03162_consen 83 LEIILDPRNYPVLIHC 98 (164)
T ss_dssp HHHHH-GGG-SEEEE-
T ss_pred HHHHhCCCCCCEEEEe
Confidence 7766654444566666
No 421
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=30.30 E-value=3.3e+02 Score=27.67 Aligned_cols=83 Identities=8% Similarity=0.073 Sum_probs=55.1
Q ss_pred ceEEecCChHHHHHHHHHHH----HHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHH
Q 008205 141 FFVRTTQSDLYQMAAIADIV----DYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLL 216 (574)
Q Consensus 141 ~~~r~~ps~~~~~~ai~~ll----~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~ 216 (574)
.+.=+.|.-.--...+|+|. ...+-++|++|+.|+ |=.+..+.|+.+.+-.|+.+... .+..++...+.
T Consensus 205 vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDt-YRIGA~EQLk~Ya~im~vp~~vv------~~~~el~~ai~ 277 (407)
T COG1419 205 VIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDT-YRIGAVEQLKTYADIMGVPLEVV------YSPKELAEAIE 277 (407)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEecc-chhhHHHHHHHHHHHhCCceEEe------cCHHHHHHHHH
Confidence 34445554433334444443 334678999999665 66667889999888888776543 24567888888
Q ss_pred HhhcCCCeEEEEEeCh
Q 008205 217 TVSSMMSRILILHTYD 232 (574)
Q Consensus 217 ~ik~~~~~viil~~~~ 232 (574)
.+++. ++|+++.-+
T Consensus 278 ~l~~~--d~ILVDTaG 291 (407)
T COG1419 278 ALRDC--DVILVDTAG 291 (407)
T ss_pred HhhcC--CEEEEeCCC
Confidence 88654 899998544
No 422
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=30.28 E-value=2.2e+02 Score=27.52 Aligned_cols=70 Identities=7% Similarity=0.018 Sum_probs=40.7
Q ss_pred CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC-hHHHHHHHHHHHHCCC
Q 008205 175 DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNAAKHLRM 247 (574)
Q Consensus 175 ~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-~~~~~~il~~a~~~gm 247 (574)
+++.....+.+++.+++.|+.+.... ...+.....+.++.+...+.+.||+... .......++++.+.|+
T Consensus 10 ~~~~~~~~~~i~~~a~~~g~~v~~~~---~~~~~~~q~~~i~~l~~~~vDgIIi~~~~~~~~~~~l~~~~~~~i 80 (302)
T TIGR02634 10 LERWQKDRDIFVAAAESLGAKVFVQS---ANGNEAKQISQIENLIARGVDVLVIIPQNGQVLSNAVQEAKDEGI 80 (302)
T ss_pred hhhHHHHHHHHHHHHHhcCCEEEEEe---CCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHCCC
Confidence 45555666777777777777765432 1123333445666676677777777543 2334556666666553
No 423
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=30.24 E-value=1.8e+02 Score=26.65 Aligned_cols=28 Identities=14% Similarity=-0.057 Sum_probs=19.3
Q ss_pred HHHhhcCCCeEEEEEeCh-HHHHHHHHHH
Q 008205 215 LLTVSSMMSRILILHTYD-IWGLEVLNAA 242 (574)
Q Consensus 215 l~~ik~~~~~viil~~~~-~~~~~il~~a 242 (574)
.+.+++.++++|++.|.+ ..+...|+.+
T Consensus 167 ~~a~~edgAeaIiLGCAGms~la~~Lq~~ 195 (230)
T COG4126 167 AEALKEDGAEAIILGCAGMSDLADQLQKA 195 (230)
T ss_pred HHHhhhcCCCEEEEcCccHHHHHHHHHHH
Confidence 345777899999998865 4455555554
No 424
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=30.04 E-value=4.7e+02 Score=24.59 Aligned_cols=87 Identities=14% Similarity=0.025 Sum_probs=59.5
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe---
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT--- 230 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~--- 230 (574)
..++......|-.-++++++. .|.....+.++..-....+.|.....+. + ..++.+-+..+++.|++..
T Consensus 64 ~~~A~~y~~~GA~aISVlTe~-~~F~Gs~~~l~~v~~~v~~PvL~KDFIi---d----~~QI~ea~~~GADavLLI~~~L 135 (247)
T PRK13957 64 VQIAKTYETLGASAISVLTDQ-SYFGGSLEDLKSVSSELKIPVLRKDFIL---D----EIQIREARAFGASAILLIVRIL 135 (247)
T ss_pred HHHHHHHHHCCCcEEEEEcCC-CcCCCCHHHHHHHHHhcCCCEEeccccC---C----HHHHHHHHHcCCCEEEeEHhhC
Confidence 345566777888888888844 4555566777666555556665554332 2 2356666668999998874
Q ss_pred ChHHHHHHHHHHHHCCCC
Q 008205 231 YDIWGLEVLNAAKHLRMM 248 (574)
Q Consensus 231 ~~~~~~~il~~a~~~gm~ 248 (574)
+.+....++..|..+||.
T Consensus 136 ~~~~l~~l~~~a~~lGle 153 (247)
T PRK13957 136 TPSQIKSFLKHASSLGMD 153 (247)
T ss_pred CHHHHHHHHHHHHHcCCc
Confidence 456788999999999985
No 425
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like. The mammalian members of this group of nicotinate phosphoribosyltransferases (NAPRTases) were originally identified as genes whose expression is upregulated upon activation in lymphoid cells. In general, nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis.
Probab=30.04 E-value=4.9e+02 Score=26.55 Aligned_cols=142 Identities=13% Similarity=0.079 Sum_probs=70.7
Q ss_pred cCCChHHHHHHHHh-hccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcc-
Q 008205 103 GPQFSVIAHLVSHI-ANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRN- 180 (574)
Q Consensus 103 Gp~~s~~~~~va~~-~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~- 180 (574)
|-..+++..++.-. ...+++|++..+- |.. . ..++...+. .....|...+++.|.=.-+++|.+..+....
T Consensus 197 ~F~gTdtv~A~~~~~~~~yg~~~~G~sI--Pa~-e---HS~i~s~~~-~~E~~AF~~~~~~fp~~~~~lv~DTYD~~~~~ 269 (407)
T cd01569 197 NFKGTDTIPALDAAYAYYYEDPMAGFSI--PAA-E---HSTMTAWGR-ERELEAFRNLLEQFGPGIVSVVSDSYDFWNAL 269 (407)
T ss_pred CCccchhhhhhhHHHHHhcCCCcccccc--cHH-H---hHHHHhCCC-ccHHHHHHHHHHHcCCCcEEEEecCccHHHHH
Confidence 44444444443222 6778888775421 111 1 111222221 2356889999999876677777766554322
Q ss_pred --hHHHHHHHHhhcCcEEEEEeecCCCCChhh----HHHHHHHh-----hcCC-----CeEEEEEe---ChHHHHHHHHH
Q 008205 181 --GIAALGDKLAEKRCRLSHKVPLSPKGSRNQ----IIDTLLTV-----SSMM-----SRILILHT---YDIWGLEVLNA 241 (574)
Q Consensus 181 --~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~----~~~~l~~i-----k~~~-----~~viil~~---~~~~~~~il~~ 241 (574)
....+++.+...|..+.. +++.. +..+ .+..|.+. ...+ .++-|+.+ +.+.+..|+..
T Consensus 270 ~~~~~~lk~~i~~~g~~lvi--RpDSG-D~~~l~~~~~~~L~~~FG~~~n~kGykvl~~~v~Ii~gd~ide~~i~~Il~~ 346 (407)
T cd01569 270 TLWGPRLKDEILARGGTLVI--RPDSG-DPVDIICGVLEILGEIFGGTVNSKGYKVLNPHVRIIQGDGITLERIEEILER 346 (407)
T ss_pred HHHHHHHHHHHHhcCCcEEE--ECCCC-CHHHHHHHHHHHHHHHhCCcccCCcccccCCceEEEEcCCCCHHHHHHHHHH
Confidence 233455555556655522 23211 1111 12223221 0012 34444443 45777788888
Q ss_pred HHHCCCCCCCeEE
Q 008205 242 AKHLRMMESGYVW 254 (574)
Q Consensus 242 a~~~gm~~~~~~~ 254 (574)
..+.|....+-.|
T Consensus 347 L~~~G~~~dNi~f 359 (407)
T cd01569 347 LKAKGFASENIVF 359 (407)
T ss_pred HHHCCCccccceE
Confidence 8888876554333
No 426
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=29.98 E-value=54 Score=28.92 Aligned_cols=30 Identities=23% Similarity=0.200 Sum_probs=25.2
Q ss_pred cEEEEcCCChHHHHHHHHhhccCCccEEec
Q 008205 98 TVAIIGPQFSVIAHLVSHIANEFQVPLLSF 127 (574)
Q Consensus 98 v~aiiGp~~s~~~~~va~~~~~~~iP~Is~ 127 (574)
++.|+||.+|.=+.....++..++.++|+.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 578999998877777788889999999984
No 427
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=29.83 E-value=3.3e+02 Score=26.54 Aligned_cols=78 Identities=10% Similarity=-0.036 Sum_probs=48.5
Q ss_pred eEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHH
Q 008205 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAK 243 (574)
Q Consensus 166 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~ 243 (574)
+.++++..+ +++.....+.+.+.+++.|+.+.... .. .+.......++.+...+.+.||+.... .....++.+.
T Consensus 64 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~-~~--~~~~~~~~~~~~~~~~~vdgiI~~~~~-~~~~~~~~l~ 139 (331)
T PRK14987 64 RAIGVLLPSLTNQVFAEVLRGIESVTDAHGYQTMLAH-YG--YKPEMEQERLESMLSWNIDGLILTERT-HTPRTLKMIE 139 (331)
T ss_pred CEEEEEeCCCcchhHHHHHHHHHHHHHHCCCEEEEec-CC--CCHHHHHHHHHHHHhcCCCEEEEcCCC-CCHHHHHHHH
Confidence 468888754 45666677888889999998876432 11 223333456667777788888885322 1234566666
Q ss_pred HCCC
Q 008205 244 HLRM 247 (574)
Q Consensus 244 ~~gm 247 (574)
+.|+
T Consensus 140 ~~~i 143 (331)
T PRK14987 140 VAGI 143 (331)
T ss_pred hCCC
Confidence 6554
No 428
>PRK05954 precorrin-8X methylmutase; Provisional
Probab=29.81 E-value=96 Score=28.03 Aligned_cols=68 Identities=9% Similarity=0.123 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc---CcEEEEc-CCChHHHHHHHHhhccCCcc
Q 008205 48 VAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN---ETVAIIG-PQFSVIAHLVSHIANEFQVP 123 (574)
Q Consensus 48 ~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~---~v~aiiG-p~~s~~~~~va~~~~~~~iP 123 (574)
....|++.+.+++ ++- + +.+ ++..+|+-.+++++++ ....||| |..---+......+...+||
T Consensus 108 Rs~aam~~a~~~~-------~~~-I-vvI----GNAPTAL~~l~eli~~g~~~PalVIg~PVGFV~A~ESKe~L~~~~iP 174 (203)
T PRK05954 108 RTETGLLKCAQQY-------PEA-I-YVI----GNAPTALLALCQQIRAGRVKPSLVIGVPVGFVSVVEAKQALAQLDVP 174 (203)
T ss_pred HHHHHHHHHHHHC-------CCC-E-EEE----eCCHHHHHHHHHHHHcCCCCCCEEEEECCcccCHHHHHHHHHhCCCC
Confidence 4567777777653 222 1 222 6778899999999987 4678888 43322222223333556899
Q ss_pred EEecc
Q 008205 124 LLSFA 128 (574)
Q Consensus 124 ~Is~~ 128 (574)
+|+..
T Consensus 175 ~It~~ 179 (203)
T PRK05954 175 QIRVE 179 (203)
T ss_pred EEEEe
Confidence 99853
No 429
>PRK02710 plastocyanin; Provisional
Probab=29.78 E-value=58 Score=26.58 Aligned_cols=10 Identities=20% Similarity=0.275 Sum_probs=4.8
Q ss_pred CCCCCeEEEE
Q 008205 27 STIPPVLNIG 36 (574)
Q Consensus 27 ~~~~~~i~IG 36 (574)
.+..-+|.+|
T Consensus 27 ~a~~~~V~~~ 36 (119)
T PRK02710 27 SAETVEVKMG 36 (119)
T ss_pred ccceEEEEEc
Confidence 3344455554
No 430
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=29.72 E-value=3.5e+02 Score=23.08 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=38.9
Q ss_pred EEEEEEEcCC--CCc---chHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc-CCCeEEEEEeC
Q 008205 167 NVIALYVDDD--HGR---NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-MMSRILILHTY 231 (574)
Q Consensus 167 ~v~ii~~~~~--~g~---~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~-~~~~viil~~~ 231 (574)
++++|...++ .|+ .....+.+.+++.|..+.....++ .+.+++.+.+++..+ +..++||..+.
T Consensus 2 ~~~ii~~~~e~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~--Dd~~~i~~~l~~~~~~~~~DlVittGG 70 (152)
T cd00886 2 RAAVLTVSDTRSAGEAEDRSGPALVELLEEAGHEVVAYEIVP--DDKDEIREALIEWADEDGVDLILTTGG 70 (152)
T ss_pred EEEEEEEcCcccCCCCccchHHHHHHHHHHcCCeeeeEEEcC--CCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 4666654442 121 234567888888998877665555 355667777766543 36788887643
No 431
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=29.68 E-value=3e+02 Score=22.84 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=31.9
Q ss_pred hHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe
Q 008205 181 GIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT 230 (574)
Q Consensus 181 ~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~ 230 (574)
....+.+.+++.|.++.....++ .+...+.+.+++..+. .++||..+
T Consensus 20 n~~~l~~~l~~~G~~v~~~~~v~--Dd~~~i~~~i~~~~~~-~DlvittG 66 (133)
T cd00758 20 NGPALEALLEDLGCEVIYAGVVP--DDADSIRAALIEASRE-ADLVLTTG 66 (133)
T ss_pred hHHHHHHHHHHCCCEEEEeeecC--CCHHHHHHHHHHHHhc-CCEEEECC
Confidence 45677778888898876654454 3556677777766544 78888764
No 432
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=29.65 E-value=1.3e+02 Score=25.57 Aligned_cols=75 Identities=12% Similarity=-0.004 Sum_probs=41.4
Q ss_pred eEEEEEEEcCCC-CcchHHHHHHHHhhc-CcEEEEEeecCCCCCh-hhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHH
Q 008205 166 RNVIALYVDDDH-GRNGIAALGDKLAEK-RCRLSHKVPLSPKGSR-NQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAA 242 (574)
Q Consensus 166 ~~v~ii~~~~~~-g~~~~~~l~~~~~~~-g~~v~~~~~~~~~~~~-~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a 242 (574)
++|-|+|+.|.. .......|.+.|++. |+.+.....-...... .-..-+.++++ .++.||+.|++......-..+
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~--~ad~Vliv~S~~~~~~~~~~~ 78 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIR--EADKVLIVCSPGYKERYDKKA 78 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHh--cCCEEEEEeccchhHHHHHhh
Confidence 478899977532 345678888899988 9888765422211112 22233334443 445566666654433333333
No 433
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=29.59 E-value=2.4e+02 Score=27.11 Aligned_cols=71 Identities=6% Similarity=-0.068 Sum_probs=37.9
Q ss_pred CCCCcchHHHHHHHHhhcCc-EEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC-hHHHHHHHHHHHHCCC
Q 008205 175 DDHGRNGIAALGDKLAEKRC-RLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNAAKHLRM 247 (574)
Q Consensus 175 ~~~g~~~~~~l~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-~~~~~~il~~a~~~gm 247 (574)
++|.....+.+.+.+++.|. .+... .+...+.......++.+...+.+.||+... .......++++.+.|.
T Consensus 10 ~~f~~~~~~gi~~~a~~~g~~~~i~~--~~~~~d~~~q~~~i~~l~~~~vdgiIi~~~~~~~~~~~l~~~~~~gi 82 (302)
T TIGR02637 10 NPFFEAANKGAEEAAKELGSVYIIYT--GPTGTTAEGQIEVVNSLIAQKVDAIAISANDPDALVPALKKAMKRGI 82 (302)
T ss_pred CHHHHHHHHHHHHHHHHhCCeeEEEE--CCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHCCC
Confidence 34445556677777777773 33221 111123333445666666667777777543 2334456666766553
No 434
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=29.53 E-value=2.4e+02 Score=26.25 Aligned_cols=75 Identities=11% Similarity=0.000 Sum_probs=42.4
Q ss_pred EEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHC
Q 008205 168 VIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHL 245 (574)
Q Consensus 168 v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~ 245 (574)
++++..+ +.+.....+.+++.+++.|..+..... ..+...-...++.+...+.+.||+..... ...++..+.+.
T Consensus 2 i~vi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiii~~~~~-~~~~~~~l~~~ 77 (268)
T cd06298 2 VGVIIPDITNSYFAELARGIDDIATMYKYNIILSNS---DNDKEKELKVLNNLLAKQVDGIIFMGGKI-SEEHREEFKRS 77 (268)
T ss_pred EEEEECCCcchHHHHHHHHHHHHHHHcCCeEEEEeC---CCCHHHHHHHHHHHHHhcCCEEEEeCCCC-cHHHHHHHhcC
Confidence 4555543 455566677888888888877654421 12333445666666667778777753321 12345555444
Q ss_pred C
Q 008205 246 R 246 (574)
Q Consensus 246 g 246 (574)
+
T Consensus 78 ~ 78 (268)
T cd06298 78 P 78 (268)
T ss_pred C
Confidence 4
No 435
>COG3221 PhnD ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=29.15 E-value=71 Score=31.02 Aligned_cols=36 Identities=3% Similarity=-0.125 Sum_probs=31.2
Q ss_pred HHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhcccccc
Q 008205 502 VFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKR 545 (574)
Q Consensus 502 l~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~ 545 (574)
|.+.+.+.+|++ .++.... .++++|..+..|++|+|
T Consensus 57 l~~~L~~~lG~~--V~~~~a~------dy~~vieal~~g~~D~A 92 (299)
T COG3221 57 LADYLEKELGIP--VEFFVAT------DYAAVIEALRAGQVDIA 92 (299)
T ss_pred HHHHHHHHhCCc--eEEEecc------cHHHHHHHHhCCCeeEE
Confidence 466789999999 7887775 79999999999999977
No 436
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=29.05 E-value=5e+02 Score=26.86 Aligned_cols=86 Identities=12% Similarity=0.069 Sum_probs=47.3
Q ss_pred eEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCC-HHHHHHHHHHhHhc---CcEEEE-cCCC
Q 008205 32 VLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYS-RFLGMVEALTLLEN---ETVAII-GPQF 106 (574)
Q Consensus 32 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~-~~~a~~~~~~l~~~---~v~aii-Gp~~ 106 (574)
+-+||++.+.++ .|++--+..++++. |..++.+.-.-.+++ +...+..+.+.+.. .|+.|+ |.++
T Consensus 135 p~~I~viTs~~g-------Aa~~D~~~~~~~r~---p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS 204 (438)
T PRK00286 135 PKRIGVITSPTG-------AAIRDILTVLRRRF---PLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGS 204 (438)
T ss_pred CCEEEEEeCCcc-------HHHHHHHHHHHhcC---CCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCC
Confidence 568999998864 34555556666554 555554444444553 22222233333333 333333 4443
Q ss_pred hHH-----HHHHHHhhccCCccEEec
Q 008205 107 SVI-----AHLVSHIANEFQVPLLSF 127 (574)
Q Consensus 107 s~~-----~~~va~~~~~~~iP~Is~ 127 (574)
-+. ...++...-...+|+||-
T Consensus 205 ~eDL~~Fn~e~v~~ai~~~~~Pvis~ 230 (438)
T PRK00286 205 LEDLWAFNDEAVARAIAASRIPVISA 230 (438)
T ss_pred HHHhhccCcHHHHHHHHcCCCCEEEe
Confidence 322 245677777889999984
No 437
>PRK05723 flavodoxin; Provisional
Probab=28.99 E-value=3.7e+02 Score=22.99 Aligned_cols=67 Identities=12% Similarity=0.009 Sum_probs=37.8
Q ss_pred EEEEEEEcC-CCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC-------hHHHHHH
Q 008205 167 NVIALYVDD-DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-------DIWGLEV 238 (574)
Q Consensus 167 ~v~ii~~~~-~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-------~~~~~~i 238 (574)
++.|+|... -..+...+.+.+.+.+.|..+..... ....++ .+...+.+|+.++ ++++..+
T Consensus 2 ~i~I~ygS~tG~ae~~A~~la~~l~~~g~~~~~~~~----~~~~~~-------~~~~~~~li~~~sT~G~Ge~Pd~~~~f 70 (151)
T PRK05723 2 KVAILSGSVYGTAEEVARHAESLLKAAGFEAWHNPR----ASLQDL-------QAFAPEALLAVTSTTGMGELPDNLMPL 70 (151)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHHCCCceeecCc----CCHhHH-------HhCCCCeEEEEECCCCCCCCchhHHHH
Confidence 678888554 23446678888888888876643211 111122 1222345555544 3667777
Q ss_pred HHHHHH
Q 008205 239 LNAAKH 244 (574)
Q Consensus 239 l~~a~~ 244 (574)
.+...+
T Consensus 71 ~~~L~~ 76 (151)
T PRK05723 71 YSAIRD 76 (151)
T ss_pred HHHHHh
Confidence 777665
No 438
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=28.95 E-value=2.5e+02 Score=26.36 Aligned_cols=77 Identities=8% Similarity=-0.027 Sum_probs=43.1
Q ss_pred EEEEEEc--CCCCcchHHHHHHHHhhc-CcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC-hHHHHHHHHHHH
Q 008205 168 VIALYVD--DDHGRNGIAALGDKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNAAK 243 (574)
Q Consensus 168 v~ii~~~--~~~g~~~~~~l~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-~~~~~~il~~a~ 243 (574)
++++..+ +.+.......+.+.+.+. |+.+..... . .+..+....++.+...+.+.||+... .+.....+..+.
T Consensus 2 ig~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~-~--~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~ 78 (270)
T cd06308 2 IGFSQCNLADPWRAAMNDEIQREASNYPDVELIIADA-A--DDNSKQVADIENFIRQGVDLLIISPNEAAPLTPVVEEAY 78 (270)
T ss_pred EEEEeeCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcC-C--CCHHHHHHHHHHHHHhCCCEEEEecCchhhchHHHHHHH
Confidence 4555543 234455667777777775 777654321 1 23334455666666677787777643 232344566666
Q ss_pred HCCC
Q 008205 244 HLRM 247 (574)
Q Consensus 244 ~~gm 247 (574)
+.|+
T Consensus 79 ~~~i 82 (270)
T cd06308 79 RAGI 82 (270)
T ss_pred HCCC
Confidence 6553
No 439
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=28.91 E-value=1.6e+02 Score=27.75 Aligned_cols=70 Identities=13% Similarity=0.080 Sum_probs=43.5
Q ss_pred CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh-HHHHHHHHHHHHCCC
Q 008205 175 DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEVLNAAKHLRM 247 (574)
Q Consensus 175 ~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~-~~~~~il~~a~~~gm 247 (574)
++|.....+.+.+.+++.|+.+..... ..+.......++.+...+.+.||+.... ......++++.+.+.
T Consensus 11 ~~~~~~~~~~~~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~i~~~~~~~i 81 (273)
T cd06309 11 SPWRTAETKSIKDAAEKRGFDLKFADA---QQKQENQISAIRSFIAQGVDVIILAPVVETGWDPVLKEAKAAGI 81 (273)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEcCCccccchHHHHHHHHCCC
Confidence 455566778888888888888765321 1233444566777777778877775432 222456677776654
No 440
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=28.75 E-value=2.9e+02 Score=25.59 Aligned_cols=75 Identities=7% Similarity=-0.028 Sum_probs=41.8
Q ss_pred EEEEEE--cCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHC
Q 008205 168 VIALYV--DDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHL 245 (574)
Q Consensus 168 v~ii~~--~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~ 245 (574)
|++|.. ++.+.....+.+++.+++.|+.+.... ...+.......++.+...+.+.||+....... ..++++.+.
T Consensus 2 igvi~~~~~~~~~~~~~~~i~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~~-~~l~~~~~~ 77 (267)
T cd06283 2 IGVIVADITNPFSSLVLKGIEDVCRAHGYQVLVCN---SDNDPEKEKEYLESLLAYQVDGLIVNPTGNNK-ELYQRLAKN 77 (267)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHHcCCEEEEEc---CCCCHHHHHHHHHHHHHcCcCEEEEeCCCCCh-HHHHHHhcC
Confidence 344443 244556677788888888887765321 11233344566677777777777775432222 234555554
Q ss_pred C
Q 008205 246 R 246 (574)
Q Consensus 246 g 246 (574)
|
T Consensus 78 ~ 78 (267)
T cd06283 78 G 78 (267)
T ss_pred C
Confidence 4
No 441
>PRK11914 diacylglycerol kinase; Reviewed
Probab=28.72 E-value=4e+02 Score=25.85 Aligned_cols=77 Identities=10% Similarity=-0.000 Sum_probs=48.3
Q ss_pred HcCCeEEEEEEEcCCCCc----chHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHH
Q 008205 162 YFGWRNVIALYVDDDHGR----NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLE 237 (574)
Q Consensus 162 ~~~W~~v~ii~~~~~~g~----~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~ 237 (574)
+..-+++.+|+ +...|. .....+.+.+++.|+.+.... . ....+...+.++....+.+.||+.+.......
T Consensus 5 ~~~~~~~~iI~-NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~--t--~~~~~~~~~a~~~~~~~~d~vvv~GGDGTi~e 79 (306)
T PRK11914 5 RHEIGKVTVLT-NPLSGHGAAPHAAERAIARLHHRGVDVVEIV--G--TDAHDARHLVAAALAKGTDALVVVGGDGVISN 79 (306)
T ss_pred cCCCceEEEEE-CCCCCCCcHHHHHHHHHHHHHHcCCeEEEEE--e--CCHHHHHHHHHHHHhcCCCEEEEECCchHHHH
Confidence 34457888888 433332 234567778888887754322 1 23455667777766667787887776666677
Q ss_pred HHHHHH
Q 008205 238 VLNAAK 243 (574)
Q Consensus 238 il~~a~ 243 (574)
++..+.
T Consensus 80 vv~~l~ 85 (306)
T PRK11914 80 ALQVLA 85 (306)
T ss_pred HhHHhc
Confidence 776553
No 442
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=28.66 E-value=5.6e+02 Score=24.96 Aligned_cols=133 Identities=15% Similarity=0.209 Sum_probs=70.3
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEE-ecCCCCHHHHHHHHHHhHhcCcEEEE--cCCChHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTV-HDTNYSRFLGMVEALTLLENETVAII--GPQFSVIA 110 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~-~d~~~~~~~a~~~~~~l~~~~v~aii--Gp~~s~~~ 110 (574)
.++.+|-..+ -+.+.+|..|+.++ +|..+.+.. .++.-.-.+.++-....++.-+.+|+ .+. .
T Consensus 41 ~v~~lF~~pS---TRTR~SFe~A~~~L-------Gg~~i~l~~~~~s~~~kgEsi~Dta~vls~y~D~iviR~~~----~ 106 (301)
T TIGR00670 41 ILANLFFEPS---TRTRLSFETAMKRL-------GGDVVNFSDSETSSVAKGETLADTIKTLSGYSDAIVIRHPL----E 106 (301)
T ss_pred EEEEEeccCC---chhHhHHHHHHHHc-------CCcEEEcCCCCcccCCCCcCHHHHHHHHHHhCCEEEEECCc----h
Confidence 4788887665 36789999999885 444444443 22221111222333333333233322 222 2
Q ss_pred HHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcCC---eEEEEEEEcCCCCcchHHH
Q 008205 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFGW---RNVIALYVDDDHGRNGIAA 184 (574)
Q Consensus 111 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~W---~~v~ii~~~~~~g~~~~~~ 184 (574)
..+..++....||+|.-...+ ...| .++++|++ ++||- .+|+++.+- .. ......
T Consensus 107 ~~~~~~a~~s~vPVINa~~g~-----~~HP------------tQ~LaDl~Ti~e~~g~l~g~~va~vGD~-~~-~~v~~S 167 (301)
T TIGR00670 107 GAARLAAEVSEVPVINAGDGS-----NQHP------------TQTLLDLYTIYEEFGRLDGLKIALVGDL-KY-GRTVHS 167 (301)
T ss_pred hHHHHHHhhCCCCEEeCCCCC-----CCCc------------HHHHHHHHHHHHHhCCCCCCEEEEEccC-CC-CcHHHH
Confidence 344566677789999742211 1112 25677753 45652 477777622 11 234566
Q ss_pred HHHHHhhcCcEEEEE
Q 008205 185 LGDKLAEKRCRLSHK 199 (574)
Q Consensus 185 l~~~~~~~g~~v~~~ 199 (574)
+...+...|..+...
T Consensus 168 l~~~~a~~g~~v~~~ 182 (301)
T TIGR00670 168 LAEALTRFGVEVYLI 182 (301)
T ss_pred HHHHHHHcCCEEEEE
Confidence 666777778776543
No 443
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=28.64 E-value=6.9e+02 Score=28.03 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=14.5
Q ss_pred ceeeHHHHHHHHHhCCCC
Q 008205 496 SGYCIDVFTAVLELLPYA 513 (574)
Q Consensus 496 ~G~~idl~~~~~~~l~f~ 513 (574)
.+=|--.+.++++.|+|.
T Consensus 587 ~~g~~~~l~~~a~~l~~~ 604 (767)
T PRK14723 587 HDGCPTKLDAVADTLGFH 604 (767)
T ss_pred ECCcchHHHHHHhhcCcc
Confidence 445667889999999987
No 444
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=28.61 E-value=6e+02 Score=25.29 Aligned_cols=87 Identities=2% Similarity=-0.166 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhh-cCcEEEEEeecCCCCChhhHHHHHHHhhcCC---CeEEEEE
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAE-KRCRLSHKVPLSPKGSRNQIIDTLLTVSSMM---SRILILH 229 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~-~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~---~~viil~ 229 (574)
..+.++++.++-+++.+|++.... ....+.+.+.++. .++.+........+.+.+.+...++.+++.+ .+.||..
T Consensus 12 ~~l~~~~~~~~~~k~livtd~~v~-~~~~~~v~~~L~~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~IIai 90 (344)
T cd08169 12 ESVESYTTRDLFDQYFFISDSGVA-DLIAHYIAEYLSKILPVHILVIEGGEEYKTFETVTRILERAIALGANRRTAIVAV 90 (344)
T ss_pred HHHHHHHHhcCCCeEEEEECccHH-HHHHHHHHHHHHhhcCceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEE
Confidence 345566777777899998855432 2456778888876 5655432222222345556677777776543 6777765
Q ss_pred eC--hHHHHHHHHH
Q 008205 230 TY--DIWGLEVLNA 241 (574)
Q Consensus 230 ~~--~~~~~~il~~ 241 (574)
+. ..++..++..
T Consensus 91 GGGsv~D~ak~vA~ 104 (344)
T cd08169 91 GGGATGDVAGFVAS 104 (344)
T ss_pred CCcHHHHHHHHHHH
Confidence 43 3444444433
No 445
>PRK05575 cbiC precorrin-8X methylmutase; Validated
Probab=28.58 E-value=1e+02 Score=27.85 Aligned_cols=48 Identities=15% Similarity=0.105 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHhHhcC---cEEEEc-CCChHHHHHHHHhhccCCccEEecc
Q 008205 81 YSRFLGMVEALTLLENE---TVAIIG-PQFSVIAHLVSHIANEFQVPLLSFA 128 (574)
Q Consensus 81 ~~~~~a~~~~~~l~~~~---v~aiiG-p~~s~~~~~va~~~~~~~iP~Is~~ 128 (574)
++..+|+-.+|+++++| ...||| |..--.+......+...++|+|+.-
T Consensus 133 GNAPTAL~~l~~li~~g~~~PalVIG~PVGFV~A~ESKe~L~~~~vP~It~~ 184 (204)
T PRK05575 133 GNAPTALYKLKELIKEGKANPKFIIAVPVGFVGAAESKEELEKLDIPYITVR 184 (204)
T ss_pred eCcHHHHHHHHHHHHcCCCCCCEEEEeCCccccHHHHHHHHHhCCCCEEEEe
Confidence 57788999999999873 678888 4332222222334455789999853
No 446
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=28.57 E-value=5.6e+02 Score=25.05 Aligned_cols=86 Identities=13% Similarity=-0.002 Sum_probs=45.3
Q ss_pred eEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-C-HHHHHHHHHHhHhcC----cEE--EE-
Q 008205 32 VLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNY-S-RFLGMVEALTLLENE----TVA--II- 102 (574)
Q Consensus 32 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~-~-~~~a~~~~~~l~~~~----v~a--ii- 102 (574)
+-+||++.+.++ .|++--+..+++.. |..++.+.-.-.++ + +.+.+++...+-..+ +.+ |+
T Consensus 14 p~~I~vITs~~g-------Aa~~D~~~~~~~r~---~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~R 83 (319)
T PF02601_consen 14 PKRIAVITSPTG-------AAIQDFLRTLKRRN---PIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIR 83 (319)
T ss_pred CCEEEEEeCCch-------HHHHHHHHHHHHhC---CCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEec
Confidence 458999998763 34455555566544 34444444333444 2 222333332222222 333 33
Q ss_pred cCCChH-----HHHHHHHhhccCCccEEec
Q 008205 103 GPQFSV-----IAHLVSHIANEFQVPLLSF 127 (574)
Q Consensus 103 Gp~~s~-----~~~~va~~~~~~~iP~Is~ 127 (574)
|.++-+ -...++.......+|+||-
T Consensus 84 GGGs~eDL~~FN~e~varai~~~~~Pvisa 113 (319)
T PF02601_consen 84 GGGSIEDLWAFNDEEVARAIAASPIPVISA 113 (319)
T ss_pred CCCChHHhcccChHHHHHHHHhCCCCEEEe
Confidence 444332 2355677778889999984
No 447
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=28.47 E-value=3.1e+02 Score=21.92 Aligned_cols=49 Identities=6% Similarity=-0.018 Sum_probs=25.3
Q ss_pred CCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe
Q 008205 176 DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT 230 (574)
Q Consensus 176 ~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~ 230 (574)
+....++..+...+++.|+++..... . .. .....+.+++.++++|.+.+
T Consensus 11 ~~~~lGl~~la~~l~~~G~~v~~~d~-~--~~---~~~l~~~~~~~~pd~V~iS~ 59 (121)
T PF02310_consen 11 EVHPLGLLYLAAYLRKAGHEVDILDA-N--VP---PEELVEALRAERPDVVGISV 59 (121)
T ss_dssp SSTSHHHHHHHHHHHHTTBEEEEEES-S--B----HHHHHHHHHHTTCSEEEEEE
T ss_pred cchhHHHHHHHHHHHHCCCeEEEECC-C--CC---HHHHHHHHhcCCCcEEEEEc
Confidence 33344556666666666666553321 1 11 13444555556666666655
No 448
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=28.46 E-value=1.7e+02 Score=28.01 Aligned_cols=65 Identities=9% Similarity=-0.038 Sum_probs=43.3
Q ss_pred eEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHH
Q 008205 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIW 234 (574)
Q Consensus 166 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~ 234 (574)
+.+++|.++ +++....+..+.+.+++.|..+.....- +..+....++.+.+.+.+-+|+.+....
T Consensus 2 ~~IGvivp~~~npff~~ii~gIe~~a~~~Gy~l~l~~t~----~~~~~e~~i~~l~~~~vDGiI~~s~~~~ 68 (279)
T PF00532_consen 2 KTIGVIVPDISNPFFAEIIRGIEQEAREHGYQLLLCNTG----DDEEKEEYIELLLQRRVDGIILASSEND 68 (279)
T ss_dssp CEEEEEESSSTSHHHHHHHHHHHHHHHHTTCEEEEEEET----TTHHHHHHHHHHHHTTSSEEEEESSSCT
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHHcCCEEEEecCC----CchHHHHHHHHHHhcCCCEEEEecccCC
Confidence 357777765 3455667788888888888877654322 2222237778888888888888755444
No 449
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=28.43 E-value=2.7e+02 Score=23.45 Aligned_cols=77 Identities=17% Similarity=0.084 Sum_probs=45.5
Q ss_pred EEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc-CCCeEEEEEeCh-HHHHHHHHHHHH
Q 008205 167 NVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-MMSRILILHTYD-IWGLEVLNAAKH 244 (574)
Q Consensus 167 ~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~-~~~~viil~~~~-~~~~~il~~a~~ 244 (574)
.|++|.+... ....+.+.+.+.|+-+......-.. .+-++.+.++.+.+ ..+++|+++.+. .+.+.+++.+++
T Consensus 3 ~valisQSG~----~~~~~~~~~~~~g~g~s~~vs~Gn~-~dv~~~d~l~~~~~D~~t~~I~ly~E~~~d~~~f~~~~~~ 77 (138)
T PF13607_consen 3 GVALISQSGA----LGTAILDWAQDRGIGFSYVVSVGNE-ADVDFADLLEYLAEDPDTRVIVLYLEGIGDGRRFLEAARR 77 (138)
T ss_dssp SEEEEES-HH----HHHHHHHHHHHTT-EESEEEE-TT--SSS-HHHHHHHHCT-SS--EEEEEES--S-HHHHHHHHHH
T ss_pred CEEEEECCHH----HHHHHHHHHHHcCCCeeEEEEeCcc-ccCCHHHHHHHHhcCCCCCEEEEEccCCCCHHHHHHHHHH
Confidence 3667764443 3455677777888877665555432 23456677777654 578999999864 557888888888
Q ss_pred CCCC
Q 008205 245 LRMM 248 (574)
Q Consensus 245 ~gm~ 248 (574)
....
T Consensus 78 a~~~ 81 (138)
T PF13607_consen 78 AARR 81 (138)
T ss_dssp HCCC
T ss_pred HhcC
Confidence 7644
No 450
>PRK15138 aldehyde reductase; Provisional
Probab=28.36 E-value=2.4e+02 Score=28.65 Aligned_cols=82 Identities=11% Similarity=0.096 Sum_probs=51.0
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCC-CcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC-
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDH-GRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY- 231 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~-g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~- 231 (574)
..+.++++. + +++.+|+.+... .......+.+.+. ++.+.....+.++++.++..+..+..++.+++.||-.+.
T Consensus 20 ~~l~~~l~~-~-~~~livt~~~~~~~~g~~~~v~~~L~--~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG 95 (387)
T PRK15138 20 AGLREQIPA-D-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPTYETLMKAVKLVREEKITFLLAVGGG 95 (387)
T ss_pred HHHHHHHhc-C-CeEEEECCCchHHhcCcHHHHHHHhc--CCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCh
Confidence 445556665 3 888888743321 2234567777775 555544334555566677888888888899999987643
Q ss_pred -hHHHHHHH
Q 008205 232 -DIWGLEVL 239 (574)
Q Consensus 232 -~~~~~~il 239 (574)
.-++...+
T Consensus 96 S~iD~AK~i 104 (387)
T PRK15138 96 SVLDGTKFI 104 (387)
T ss_pred HHHHHHHHH
Confidence 34444443
No 451
>PF02570 CbiC: Precorrin-8X methylmutase; InterPro: IPR003722 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiC and CobH precorrin-8X methylmutase (also known as precorrin isomerase, 5.4.1.2 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. CobH and CbiC from the aerobic and anaerobic pathways, respectively, catalyse a methyl rearrangement in precorrin-8 that moves the methyl group from C-11 to C-12 to produce hydrogenobyrinic acid []. Hydrogenobyrinic acid now contains all the major framework alterations associated with corrin synthesis []. CobH and CbiC can sometimes be fused to other enzymes in the cobalamin pathway to make bifunctional enzymes: e.g., with CobJ/CibH (precorrin-3B C17-methylase/precorrin isomerase, IPR014422 from INTERPRO) and with CbiX (precorrin isomerase, IPR012067 from INTERPRO).; GO: 0016993 precorrin-8X methylmutase activity, 0009236 cobalamin biosynthetic process; PDB: 1V9C_B 1I1H_A 1F2V_A 1OU0_B 2AFV_A 2AFR_A 3E7D_D.
Probab=28.30 E-value=1e+02 Score=27.81 Aligned_cols=48 Identities=23% Similarity=0.204 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHhHhc---CcEEEEc-CCChHHHHHHHHhhccCCccEEecc
Q 008205 81 YSRFLGMVEALTLLEN---ETVAIIG-PQFSVIAHLVSHIANEFQVPLLSFA 128 (574)
Q Consensus 81 ~~~~~a~~~~~~l~~~---~v~aiiG-p~~s~~~~~va~~~~~~~iP~Is~~ 128 (574)
++..+|+-.+++++.+ .+..||| |..---+......+...++|+|+.-
T Consensus 126 GNAPTAL~~ll~li~~~~~~PalVIg~PVGFV~A~ESKe~L~~~~vP~I~~~ 177 (198)
T PF02570_consen 126 GNAPTALFELLELIEEGGVRPALVIGVPVGFVGAAESKEALMQSGVPYITVR 177 (198)
T ss_dssp SS-HHHHHHHHHHHHTTT-TTSEEEE---SSSSHHHHHHHHHHSTS-EEEES
T ss_pred eCcHHHHHHHHHHHHhcCCCCcEEEECCCcccCcHHHHHHHHhCCCCEEEEe
Confidence 6788899999999987 5678888 4333223333445555599999853
No 452
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=28.11 E-value=7.1e+02 Score=26.62 Aligned_cols=96 Identities=11% Similarity=0.042 Sum_probs=51.9
Q ss_pred CChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCCh--hhHHHHHHHhhcCCCe
Q 008205 147 QSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSR--NQIIDTLLTVSSMMSR 224 (574)
Q Consensus 147 ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~--~~~~~~l~~ik~~~~~ 224 (574)
|....-...+++.++. -+++.|+...|..|......+...+++.|..+.... +..... .-....++++...+.+
T Consensus 38 ~~~~~a~~~i~~~i~~--~~~I~I~gh~D~DGi~S~~~L~~~L~~~g~~v~~~i--p~r~~~~yg~~~~~i~~~~~~~~~ 113 (539)
T TIGR00644 38 KDMEKAVERIIEAIEN--NEKILIFGDYDVDGITSTAILVEFLKDLGVNVDYYI--PNRITEGYGLSPEALREAIENGVS 113 (539)
T ss_pred CCHHHHHHHHHHHHhc--CCeEEEEEccCCCcHHHHHHHHHHHHHCCCceEEEe--CCCCcccCCCCHHHHHHHHhcCCC
Confidence 3333333344444443 368888887787888889999999999997765432 211000 0011234444434444
Q ss_pred EE-EEEeChHHHHHHHHHHHHCCC
Q 008205 225 IL-ILHTYDIWGLEVLNAAKHLRM 247 (574)
Q Consensus 225 vi-il~~~~~~~~~il~~a~~~gm 247 (574)
.+ +++|....-..+ ..+.+.|+
T Consensus 114 LiI~vD~G~~~~~~~-~~~~~~g~ 136 (539)
T TIGR00644 114 LIITVDNGISAHEEI-DYAKELGI 136 (539)
T ss_pred EEEEeCCCcccHHHH-HHHHhcCC
Confidence 44 456665443333 44555554
No 453
>PF12262 Lipase_bact_N: Bacterial virulence factor lipase N-terminal
Probab=28.10 E-value=53 Score=31.25 Aligned_cols=22 Identities=18% Similarity=0.028 Sum_probs=12.1
Q ss_pred CchhHHHHHHHHHHHHhhcccccCC
Q 008205 1 MTKIYLLALVVVYNFCFSAGISMNG 25 (574)
Q Consensus 1 M~~~~~~~~~~~~~~~~~~~~~~~~ 25 (574)
|||.+ +.++++.++.++| |+++
T Consensus 1 Mkk~~--l~~~l~sal~L~G-Cg~~ 22 (268)
T PF12262_consen 1 MKKLL--LSSALASALGLAG-CGGD 22 (268)
T ss_pred CchHH--HHHHHHHHHHeee-cCCC
Confidence 99965 3333433445566 6554
No 454
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=28.09 E-value=41 Score=30.70 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=23.6
Q ss_pred CcEEEEcCCChHHHHHHHHhhccCCccEEec
Q 008205 97 ETVAIIGPQFSVIAHLVSHIANEFQVPLLSF 127 (574)
Q Consensus 97 ~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~ 127 (574)
++.+|+||+++.-+...-.++..++.|+|+.
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~ 32 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISL 32 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEe
Confidence 4789999999987777778899999999984
No 455
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=28.06 E-value=54 Score=24.83 Aligned_cols=22 Identities=32% Similarity=0.680 Sum_probs=13.4
Q ss_pred CchhHHHHHHHHHHHHhhcccccC
Q 008205 1 MTKIYLLALVVVYNFCFSAGISMN 24 (574)
Q Consensus 1 M~~~~~~~~~~~~~~~~~~~~~~~ 24 (574)
||+.+++..+.+++ ++++| |+.
T Consensus 1 mk~klll~aviLs~-~LLaG-CAs 22 (85)
T PRK09973 1 MKTIFTVGAVVLAT-CLLSG-CVN 22 (85)
T ss_pred CchhHHHHHHHHHH-HHHHH-cCC
Confidence 88876666655543 45566 644
No 456
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=27.68 E-value=3.2e+02 Score=23.14 Aligned_cols=97 Identities=13% Similarity=0.010 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEEEEc-CCC-CcchHHHHHHHHhhcCcE---EEEEeecCCCCChhhHHHHHHHhhcCCC
Q 008205 149 DLYQMAAIADIVDYFGWRNVIALYVD-DDH-GRNGIAALGDKLAEKRCR---LSHKVPLSPKGSRNQIIDTLLTVSSMMS 223 (574)
Q Consensus 149 ~~~~~~ai~~ll~~~~W~~v~ii~~~-~~~-g~~~~~~l~~~~~~~g~~---v~~~~~~~~~~~~~~~~~~l~~ik~~~~ 223 (574)
...-....+++.+. |.....++... ... +....+.+++.+.+.|+. |.... -+ ..+.+++....+.+++.+.
T Consensus 22 ~~~R~~~a~~L~~~-g~~~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp~~~I~~e~-~s-~~T~ena~~~~~~~~~~~~ 98 (155)
T PF02698_consen 22 SRERLDEAARLYKA-GYAPRILFSGGYGHGDGRSEAEAMRDYLIELGVPEERIILEP-KS-TNTYENARFSKRLLKERGW 98 (155)
T ss_dssp -HHHHHHHHHHHH--HHT--EEEE--SSTTHTS-HHHHHHHHHHHT---GGGEEEE------SHHHHHHHHHHHHHT-SS
T ss_pred HHHHHHHHHHHHhc-CCCCeEEECCCCCCCCCCCHHHHHHHHHHhcccchheeEccC-CC-CCHHHHHHHHHHHHHhhcC
Confidence 33344556666664 33333444332 222 456778889999888864 22211 11 1234566666666777766
Q ss_pred eEEEEEeChHHHHHHHHHHHHCCCC
Q 008205 224 RILILHTYDIWGLEVLNAAKHLRMM 248 (574)
Q Consensus 224 ~viil~~~~~~~~~il~~a~~~gm~ 248 (574)
+-|++.++.-...+....+++.+..
T Consensus 99 ~~iilVT~~~H~~Ra~~~~~~~~~~ 123 (155)
T PF02698_consen 99 QSIILVTSPYHMRRARMIFRKVGPD 123 (155)
T ss_dssp S-EEEE--CCCHHHHHHHHHHHH--
T ss_pred CeEEEECCHHHHHHHHHHHHHhCCC
Confidence 6777777777777777666666543
No 457
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=27.59 E-value=3.6e+02 Score=22.75 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=32.8
Q ss_pred hHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe
Q 008205 181 GIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT 230 (574)
Q Consensus 181 ~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~ 230 (574)
....+.+.+++.|+++.....++ .+.+++.+.+++..+ +.++||..+
T Consensus 28 n~~~l~~~l~~~G~~v~~~~~v~--Dd~~~i~~~l~~~~~-~~DliIttG 74 (144)
T TIGR00177 28 NGPLLAALLEEAGFNVSRLGIVP--DDPEEIREILRKAVD-EADVVLTTG 74 (144)
T ss_pred cHHHHHHHHHHCCCeEEEEeecC--CCHHHHHHHHHHHHh-CCCEEEECC
Confidence 34577888888998887665555 345667777776643 678888864
No 458
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=27.56 E-value=6.1e+02 Score=25.10 Aligned_cols=133 Identities=18% Similarity=0.112 Sum_probs=70.0
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHLV 113 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 113 (574)
.++.+|...+ -+.+.+|..|+.++ +|.-+.+...++.-.--+.++-....++.-+.+|+--.. ....+
T Consensus 47 ~l~~lF~epS---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~y~D~iviR~~--~~~~~ 114 (332)
T PRK04284 47 NIALIFEKDS---TRTRCAFEVAAYDQ-------GAHVTYLGPTGSQMGKKESTKDTARVLGGMYDGIEYRGF--SQRTV 114 (332)
T ss_pred EEEEEecCCC---hhHHHHHHHHHHHc-------CCeEEEcCCccccCCCCcCHHHHHHHHHHhCCEEEEecC--chHHH
Confidence 4777887765 36889999999885 344333322222111112233333344443444332111 22345
Q ss_pred HHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HH-cC-C--eEEEEEEEcCCCCcchHHHHH
Q 008205 114 SHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DY-FG-W--RNVIALYVDDDHGRNGIAALG 186 (574)
Q Consensus 114 a~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~-~~-W--~~v~ii~~~~~~g~~~~~~l~ 186 (574)
..++....||+|.- . + +...| .++++|++ ++ +| + .+|+++.+ . .. .....+.
T Consensus 115 ~~~a~~s~vPVINa-~-~----~~~HP------------tQaL~Dl~Ti~e~~~g~l~g~kia~vGD-~-~~-~v~~Sl~ 173 (332)
T PRK04284 115 ETLAEYSGVPVWNG-L-T----DEDHP------------TQVLADFLTAKEHLKKPYKDIKFTYVGD-G-RN-NVANALM 173 (332)
T ss_pred HHHHHhCCCCEEEC-C-C----CCCCh------------HHHHHHHHHHHHHhcCCcCCcEEEEecC-C-Cc-chHHHHH
Confidence 56667778999973 2 1 11222 26777763 45 33 3 46777752 1 12 3556666
Q ss_pred HHHhhcCcEEEEE
Q 008205 187 DKLAEKRCRLSHK 199 (574)
Q Consensus 187 ~~~~~~g~~v~~~ 199 (574)
..+...|..+...
T Consensus 174 ~~~~~~g~~v~~~ 186 (332)
T PRK04284 174 QGAAIMGMDFHLV 186 (332)
T ss_pred HHHHHcCCEEEEE
Confidence 6777778877653
No 459
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=27.39 E-value=2.5e+02 Score=26.38 Aligned_cols=75 Identities=12% Similarity=0.015 Sum_probs=42.5
Q ss_pred EEEEEE-cCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC-hHHHHHHHHHHHH
Q 008205 168 VIALYV-DDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNAAKH 244 (574)
Q Consensus 168 v~ii~~-~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-~~~~~~il~~a~~ 244 (574)
|++|.. .++|.......+.+.+++.|+.+.... +...+.......++.+...+.+.+|+... .......++++.+
T Consensus 2 i~~v~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~--~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~~ 78 (271)
T cd06314 2 IAVVTNGASPFWKIAEAGVKAAGKELGVDVEFVV--PQQGTVNAQLRMLEDLIAEGVDGIAISPIDPKAVIPALNKAAA 78 (271)
T ss_pred eEEEcCCCcHHHHHHHHHHHHHHHHcCCeEEEeC--CCCCCHHHHHHHHHHHHhcCCCEEEEecCChhHhHHHHHHHhc
Confidence 444442 234555667777788888887765431 11113333456666777777777777643 2333456666654
No 460
>TIGR00363 lipoprotein, YaeC family. This family of putative lipoproteins contains a consensus site for lipoprotein signal sequence cleavage. Included in this family is the E. coli hypothetical protein yaeC. About half of the proteins between the noise and trusted cutoffs contain the consensus lipoprotein signature and may belong to this family.
Probab=27.37 E-value=1.5e+02 Score=28.13 Aligned_cols=43 Identities=14% Similarity=0.188 Sum_probs=23.6
Q ss_pred CCeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCH
Q 008205 30 PPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSR 83 (574)
Q Consensus 30 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~ 83 (574)
..+|+||.....+. .-++.+.+..-++ .|++++++.+++...+
T Consensus 17 ~~~l~vG~~~~~~~-------~~~~~~~~~~~~~----~G~~Ve~~~f~d~~~~ 59 (258)
T TIGR00363 17 PLHIKVGVISGAEQ-------QVAEVAAKVAKEK----YGLDVELVEFNDYALP 59 (258)
T ss_pred CCcEEEEeCCCChH-------HHHHHHHHHHHHh----cCCEEEEEEeCCcHHH
Confidence 45799998754321 1222333332222 2689999988764433
No 461
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=27.26 E-value=3.5e+02 Score=25.10 Aligned_cols=61 Identities=8% Similarity=0.070 Sum_probs=34.9
Q ss_pred EEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe
Q 008205 168 VIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT 230 (574)
Q Consensus 168 v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~ 230 (574)
|++|..+ +.+.......+++.+++.|+.+..... . ..+.......++.+...+.+.|++..
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~vdgiii~~ 64 (264)
T cd01574 2 IGVVTTDLALHGPSSTLAAIESAAREAGYAVTLSML-A-EADEEALRAAVRRLLAQRVDGVIVNA 64 (264)
T ss_pred EEEEeCCCCcccHHHHHHHHHHHHHHCCCeEEEEeC-C-CCchHHHHHHHHHHHhcCCCEEEEeC
Confidence 4455533 334556677777888888877654321 1 11223445566667666777777654
No 462
>PTZ00088 adenylate kinase 1; Provisional
Probab=27.19 E-value=62 Score=30.06 Aligned_cols=29 Identities=3% Similarity=0.114 Sum_probs=25.2
Q ss_pred EEEEcCCChHHHHHHHHhhccCCccEEec
Q 008205 99 VAIIGPQFSVIAHLVSHIANEFQVPLLSF 127 (574)
Q Consensus 99 ~aiiGp~~s~~~~~va~~~~~~~iP~Is~ 127 (574)
++|+||.+|.-+.....++..+++|+|+.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 78899999887777788899999999985
No 463
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=27.12 E-value=3.8e+02 Score=22.49 Aligned_cols=118 Identities=15% Similarity=0.103 Sum_probs=60.9
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChHHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~~~ 111 (574)
+||.+.+.. .........+|+.|+.+. |.......................++++ .+.+||...+ ..+.
T Consensus 11 ~i~~i~~~~~~~~~~~r~~gf~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pdaii~~~~-~~a~ 81 (160)
T PF13377_consen 11 RIAFIGGPPNSSVSRERLEGFREALKEH--------GIEFEELIFFSDDDSEDAREAQLLWLRRLRPDAIICSND-RLAL 81 (160)
T ss_dssp SEEEEESSTTSHHHHHHHHHHHHHHHHT--------TSEEEGEEEEESSSHHHHHHHHHHHHHTCSSSEEEESSH-HHHH
T ss_pred eEEEEecCCCChhHHHHHHHHHHHHHHC--------CCCCCeeEeecCCcchhHHHHHHHHHhcCCCcEEEEcCH-HHHH
Confidence 366666333 333355678888888774 3344444433333333332222223333 6688887444 4444
Q ss_pred HHHHhhccCCc------cEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHH
Q 008205 112 LVSHIANEFQV------PLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDY 162 (574)
Q Consensus 112 ~va~~~~~~~i------P~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~ 162 (574)
.+...+...++ .++++... + ..+..+|-+-.+..+...++...++++..
T Consensus 82 ~~~~~l~~~g~~vP~di~vv~~~~~-~-~~~~~~p~it~i~~~~~~~g~~a~~~l~~ 136 (160)
T PF13377_consen 82 GVLRALRELGIRVPQDISVVSFDDS-P-LLEFFSPPITTIDQDPREMGREAVELLLD 136 (160)
T ss_dssp HHHHHHHHTTSCTTTTSEEEEESSS-G-HHHCSSSTSEEEEE-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcccccccEEEecCc-H-HHHHHcCCCceecCCHHHHHHHHHHHHHH
Confidence 55566655533 46665322 1 11223455555555677777777776543
No 464
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=26.63 E-value=3.3e+02 Score=27.11 Aligned_cols=81 Identities=10% Similarity=0.054 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC--
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-- 231 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-- 231 (574)
..+.++++.++ +++.+|++...+ ....+.+.+.++..++.+. .+....+.+++.+.++..++.+.+.||-.+.
T Consensus 13 ~~l~~~~~~~~-~~~liv~d~~~~-~~~~~~l~~~L~~~~~~~~---~~~~~p~~~~v~~~~~~~~~~~~D~iIavGGGs 87 (347)
T cd08172 13 DELGELLKRFG-KRPLIVTGPRSW-AAAKPYLPESLAAGEAFVL---RYDGECSEENIERLAAQAKENGADVIIGIGGGK 87 (347)
T ss_pred HHHHHHHHHhC-CeEEEEECHHHH-HHHHHHHHHHHhcCeEEEE---EeCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcH
Confidence 44566777775 899899865432 2345666666654554332 1221246677888888888889998887643
Q ss_pred hHHHHHHH
Q 008205 232 DIWGLEVL 239 (574)
Q Consensus 232 ~~~~~~il 239 (574)
.-++..++
T Consensus 88 ~~D~aK~i 95 (347)
T cd08172 88 VLDTAKAV 95 (347)
T ss_pred HHHHHHHH
Confidence 34444444
No 465
>PRK09861 cytoplasmic membrane lipoprotein-28; Provisional
Probab=26.62 E-value=4e+02 Score=25.52 Aligned_cols=25 Identities=16% Similarity=0.387 Sum_probs=16.6
Q ss_pred ccceEEEEEecCCChHHHHHHHHHH
Q 008205 278 IQGVLTLRMYTQSSEEKRKFVTRWR 302 (574)
Q Consensus 278 ~~g~~~~~~~~~~~~~~~~f~~~~~ 302 (574)
..+++.++-.+.+.+.+++|++.|+
T Consensus 228 ~~n~~~~r~~~~~~~~~~~lv~~~~ 252 (272)
T PRK09861 228 YVNILVAREDNKNAENVKEFLQSYQ 252 (272)
T ss_pred eEEEEEEcCCccCCHHHHHHHHHHc
Confidence 4456666655556677888887775
No 466
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=26.60 E-value=4.8e+02 Score=23.50 Aligned_cols=76 Identities=18% Similarity=0.068 Sum_probs=47.8
Q ss_pred eEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC----hHHHHHHHHH
Q 008205 166 RNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY----DIWGLEVLNA 241 (574)
Q Consensus 166 ~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~----~~~~~~il~~ 241 (574)
.++.+.....+...-+..-+...++..|+++.+ +..+.. ..++++.+++.++++|.+.+. ...+..++++
T Consensus 83 ~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~---lG~~~p---~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~ 156 (201)
T cd02070 83 GKVVIGTVEGDIHDIGKNLVATMLEANGFEVID---LGRDVP---PEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEA 156 (201)
T ss_pred CeEEEEecCCccchHHHHHHHHHHHHCCCEEEE---CCCCCC---HHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHH
Confidence 355555555555556677778888888988753 222122 345566666778888887653 2456677777
Q ss_pred HHHCCC
Q 008205 242 AKHLRM 247 (574)
Q Consensus 242 a~~~gm 247 (574)
.++.+.
T Consensus 157 lr~~~~ 162 (201)
T cd02070 157 LKEAGL 162 (201)
T ss_pred HHHCCC
Confidence 777654
No 467
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.46 E-value=3.2e+02 Score=25.45 Aligned_cols=69 Identities=9% Similarity=0.014 Sum_probs=34.1
Q ss_pred CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCC
Q 008205 175 DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRM 247 (574)
Q Consensus 175 ~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm 247 (574)
+.+.....+.+++.+++.|+++.... . .........+.+.+...+.+.||+..... ....++.+.+.|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~g~~~~~~~--~-~~~~~~~~~~~~~~~~~~~dgiii~~~~~-~~~~~~~~~~~~i 84 (270)
T cd06294 16 NPFFIEVLRGISAVANENGYDISLAT--G-KNEEELLEEVKKMIQQKRVDGFILLYSRE-DDPIIDYLKEEKF 84 (270)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEec--C-CCcHHHHHHHHHHHHHcCcCEEEEecCcC-CcHHHHHHHhcCC
Confidence 34555566777777877887765421 1 11122222222224444567666653221 1344555655553
No 468
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=26.34 E-value=3.3e+02 Score=25.72 Aligned_cols=48 Identities=21% Similarity=0.314 Sum_probs=37.9
Q ss_pred chHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe
Q 008205 180 NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT 230 (574)
Q Consensus 180 ~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~ 230 (574)
...+.|-+.|...|+.+.....++ .+..++.+.++...+. +++||+.+
T Consensus 21 tNa~~la~~L~~~G~~v~~~~~Vg--D~~~~I~~~l~~a~~r-~D~vI~tG 68 (255)
T COG1058 21 TNAAFLADELTELGVDLARITTVG--DNPDRIVEALREASER-ADVVITTG 68 (255)
T ss_pred chHHHHHHHHHhcCceEEEEEecC--CCHHHHHHHHHHHHhC-CCEEEECC
Confidence 356788889999999998887776 4667788888888766 88888864
No 469
>PRK05953 precorrin-8X methylmutase; Validated
Probab=26.23 E-value=1.1e+02 Score=27.74 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHhHhc---CcEEEEc-CCChHHHHHHHHhhccCCccEEecc
Q 008205 81 YSRFLGMVEALTLLEN---ETVAIIG-PQFSVIAHLVSHIANEFQVPLLSFA 128 (574)
Q Consensus 81 ~~~~~a~~~~~~l~~~---~v~aiiG-p~~s~~~~~va~~~~~~~iP~Is~~ 128 (574)
++..+|+-.+|+++.+ ....||| |..--.+.-....+...+||+|+.-
T Consensus 126 GNAPTAL~~l~~li~~g~~~PalVIG~PVGFV~AaESKe~L~~~~vP~It~~ 177 (208)
T PRK05953 126 GQSQTALTALVELVEAEEIRPALVIATPAGFIDADDAKERLQDSLVPHITID 177 (208)
T ss_pred eCcHHHHHHHHHHHHhcCCCCCEEEEeCCcccCcHHHHHHHHhCCCCEEEEe
Confidence 5778899999999886 4788888 4332222222333345689999853
No 470
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=26.23 E-value=7.5e+02 Score=25.67 Aligned_cols=145 Identities=13% Similarity=0.047 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhHhcCcEEEE--cCCC-------hHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHH
Q 008205 83 RFLGMVEALTLLENETVAII--GPQF-------SVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQM 153 (574)
Q Consensus 83 ~~~a~~~~~~l~~~~v~aii--Gp~~-------s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~ 153 (574)
+..+...+.++...|+.+++ .... ......+..++...++.++.+++.- +-+..........|..
T Consensus 74 ~~~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlGPnc~G--~~~~~~~l~~~~~~~~---- 147 (447)
T TIGR02717 74 AKYVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLGPNCLG--IINTHIKLNATFAPTM---- 147 (447)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEecCeee--EecCCCCeeeecCCCC----
Confidence 44445555666666665443 2111 1223567888999999999876532 2221101111111110
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc-CCCeEEEEEeCh
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-MMSRILILHTYD 232 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~-~~~~viil~~~~ 232 (574)
..--.+++|.++.. ....+...+.+.|+-+.....+-.. -+.++.+.+..+.+ .++++|+++.+.
T Consensus 148 ---------~~~G~valvsqSG~----~~~~~~~~~~~~g~g~s~~vs~Gn~-~d~~~~d~l~~l~~D~~t~~I~ly~E~ 213 (447)
T TIGR02717 148 ---------PKKGGIAFISQSGA----LLTALLDWAEKNGVGFSYFVSLGNK-ADIDESDLLEYLADDPDTKVILLYLEG 213 (447)
T ss_pred ---------CCCCCEEEEechHH----HHHHHHHHHHhcCCCcceEEECCch-hhCCHHHHHHHHhhCCCCCEEEEEecC
Confidence 12246999986654 3455667777777766655444322 23456777777754 589999999875
Q ss_pred -HHHHHHHHHHHHCCC
Q 008205 233 -IWGLEVLNAAKHLRM 247 (574)
Q Consensus 233 -~~~~~il~~a~~~gm 247 (574)
.+...++..+++...
T Consensus 214 ~~~~~~f~~aa~~a~~ 229 (447)
T TIGR02717 214 IKDGRKFLKTAREISK 229 (447)
T ss_pred CCCHHHHHHHHHHHcC
Confidence 556788888877643
No 471
>PRK06264 cbiC precorrin-8X methylmutase; Validated
Probab=26.11 E-value=1.2e+02 Score=27.62 Aligned_cols=68 Identities=18% Similarity=0.195 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc---CcEEEEc-CCChHHHHHHHHhhccCCcc
Q 008205 48 VAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN---ETVAIIG-PQFSVIAHLVSHIANEFQVP 123 (574)
Q Consensus 48 ~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~---~v~aiiG-p~~s~~~~~va~~~~~~~iP 123 (574)
....|++.+.+++ ++- -+.+ ++..+|+-.+|+++++ ...+||| |..--.+......+...+||
T Consensus 114 Rs~aam~~a~~~~-------~~~--IvvI----GNAPTAL~~l~~li~~g~~~PalVIg~PVGFV~A~ESKe~L~~~~vP 180 (210)
T PRK06264 114 RAVASMRLAKELI-------DGG--IVVI----GNAPTALFEVIRLVKEEGIKPKLVVGVPVGFVKAAESKEALRNTNIP 180 (210)
T ss_pred HHHHHHHHHHHHC-------CCC--EEEE----ECcHHHHHHHHHHHHhCCCCCcEEEEeCCccccHHHHHHHHHhCCCC
Confidence 3467777777753 222 1122 6788899999999987 4678888 43322222222333456899
Q ss_pred EEecc
Q 008205 124 LLSFA 128 (574)
Q Consensus 124 ~Is~~ 128 (574)
+|+..
T Consensus 181 ~It~~ 185 (210)
T PRK06264 181 SISTI 185 (210)
T ss_pred EEEEe
Confidence 99853
No 472
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=26.05 E-value=3.9e+02 Score=22.29 Aligned_cols=72 Identities=18% Similarity=0.170 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEEEEcC-CCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEE
Q 008205 149 DLYQMAAIADIVDYFGWRNVIALYVDD-DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILI 227 (574)
Q Consensus 149 ~~~~~~ai~~ll~~~~W~~v~ii~~~~-~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~vii 227 (574)
...|...+-+++...||.-+.+ |.|. ..|.. .....+..+++.++....++|+
T Consensus 17 ~~~Q~~~~~~~a~~~g~~i~~~-~~d~~~Sg~~-------------------------~~Rp~l~~ll~~~~~g~~~~iv 70 (148)
T smart00857 17 LERQLEALRAYAKANGWEVVRI-YEDEGVSGKK-------------------------ADRPGLQRLLADLRAGDIDVLV 70 (148)
T ss_pred HHHHHHHHHHHHHHCCCEEEEE-EEeCCCcCCC-------------------------CCCHHHHHHHHHHHcCCCCEEE
Confidence 3456666677777777775543 3333 22110 1234566777777666665666
Q ss_pred EEeC------hHHHHHHHHHHHHCC
Q 008205 228 LHTY------DIWGLEVLNAAKHLR 246 (574)
Q Consensus 228 l~~~------~~~~~~il~~a~~~g 246 (574)
+.-- ..+...++..+...|
T Consensus 71 v~~~~Rl~R~~~~~~~~~~~l~~~g 95 (148)
T smart00857 71 VYKLDRLGRSLRDLLALLELLEKKG 95 (148)
T ss_pred EeccchhhCcHHHHHHHHHHHHHCC
Confidence 5421 234455566666655
No 473
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=25.96 E-value=5e+02 Score=23.57 Aligned_cols=87 Identities=8% Similarity=0.005 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHc--CCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEE
Q 008205 152 QMAAIADIVDYF--GWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILH 229 (574)
Q Consensus 152 ~~~ai~~ll~~~--~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~ 229 (574)
-+..+++++... .=.++.++..+. ....+.+.+.+.|..+.....+...... +.....+.+.+...+ +|++
T Consensus 107 ~~~~L~~~i~~~~~~~~~il~~~g~~-----~~~~l~~~L~~~g~~v~~~~~Y~~~~~~-~~~~~~~~l~~~~~~-~iif 179 (239)
T cd06578 107 DSEGLLELLELQDGKGKRILRPRGGR-----AREDLAEALRERGAEVDEVEVYRTVPPD-LDAELLELLEEGAID-AVLF 179 (239)
T ss_pred CHHHHHHHHHhcCCCCCEEEEEcCcc-----hhHHHHHHHHHCCCEEEEEEEEEEECCC-CcHHHHHHHHcCCCc-EEEE
Confidence 356788877664 334444443222 3567888888888776554333211111 112233344443333 6777
Q ss_pred eChHHHHHHHHHHHHC
Q 008205 230 TYDIWGLEVLNAAKHL 245 (574)
Q Consensus 230 ~~~~~~~~il~~a~~~ 245 (574)
.++..+..++....+.
T Consensus 180 tS~~~v~~f~~~~~~~ 195 (239)
T cd06578 180 TSPSTVRNLLELLGKE 195 (239)
T ss_pred eCHHHHHHHHHHHhhh
Confidence 7888888888877654
No 474
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=25.87 E-value=7.9e+02 Score=25.81 Aligned_cols=140 Identities=13% Similarity=0.087 Sum_probs=71.6
Q ss_pred EEcCCChHHHHHHHHhhc-cCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCC-
Q 008205 101 IIGPQFSVIAHLVSHIAN-EFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHG- 178 (574)
Q Consensus 101 iiGp~~s~~~~~va~~~~-~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g- 178 (574)
|++|.+.....++..+.. ...+=+|.++. .-++|- ..........+++....=+++.|+|... +|
T Consensus 198 i~~p~~~~v~~~l~~~~~l~l~~~~i~p~H----------G~i~r~--~~~~~l~~Y~~~~~~~~~~kv~IvY~S~-~Gn 264 (479)
T PRK05452 198 ILTPFSRLVTPKITEILGFNLPVDMIATSH----------GVVWRD--NPTQIVELYLKWAADYQEDRITIFYDTM-SNN 264 (479)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCCEEECCC----------CceEeC--CHHHHHHHHHHHhhccCcCcEEEEEECC-ccH
Confidence 667776665556666554 23344444321 112442 2222233333444433447899999543 44
Q ss_pred -cchHHHHHHHHhhc--CcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh------HHHHHHHHHHHHCCCCC
Q 008205 179 -RNGIAALGDKLAEK--RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD------IWGLEVLNAAKHLRMME 249 (574)
Q Consensus 179 -~~~~~~l~~~~~~~--g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~------~~~~~il~~a~~~gm~~ 249 (574)
+..++.+.+.+++. |+.+.... +. ..+...++..+. +++.|++.+++ .....++.......+.+
T Consensus 265 Te~mA~~ia~gl~~~g~gv~v~~~~-v~----~~~~~~i~~~~~--~ad~vilGspT~~~~~~p~~~~fl~~l~~~~l~g 337 (479)
T PRK05452 265 TRMMADAIAQGIAEVDPRVAVKIFN-VA----RSDKNEILTNVF--RSKGVLVGSSTMNNVMMPKIAGLLEEITGLRFRN 337 (479)
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEE-CC----CCCHHHHHhHHh--hCCEEEEECCccCCcchHHHHHHHHHhhccCcCC
Confidence 45677888888766 45544332 22 223444555553 45677777654 33556666666655544
Q ss_pred CCeEEEEeCcc
Q 008205 250 SGYVWIVTDWL 260 (574)
Q Consensus 250 ~~~~~i~~~~~ 260 (574)
....-+.+..|
T Consensus 338 K~~~vFGSygw 348 (479)
T PRK05452 338 KRASAFGSHGW 348 (479)
T ss_pred CEEEEEECCCc
Confidence 33333444333
No 475
>COG1638 DctP TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=25.80 E-value=3.3e+02 Score=26.96 Aligned_cols=61 Identities=23% Similarity=0.181 Sum_probs=36.5
Q ss_pred CeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC--CHHHHHHHHHHhHhcCcEEEEc
Q 008205 31 PVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNY--SRFLGMVEALTLLENETVAIIG 103 (574)
Q Consensus 31 ~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~--~~~~a~~~~~~l~~~~v~aiiG 103 (574)
..++.+...|.+. ..-.++...-+.++... |-+|++.++.... +.. ...+.+..|.+=+.-
T Consensus 28 ~~l~~~~~~~~~~----p~~~~~~~fa~~v~ekt----~G~l~i~vfP~~qLG~~~----~~ie~l~~G~id~~~ 90 (332)
T COG1638 28 LVLRFSHVTPEGH----PKGKAAKKFAELVEEKT----GGRLKIEVFPNSQLGGEA----EMIEQLRSGTLDIGV 90 (332)
T ss_pred eEEeecccCCCCC----cHHHHHHHHHHHHHHHh----CCeEEEEECCCcccCcHH----HHHHHHhcCCeeEEe
Confidence 3566666665543 45667777778888775 2367777775542 333 344666666554443
No 476
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=25.74 E-value=4.9e+02 Score=24.87 Aligned_cols=80 Identities=15% Similarity=0.096 Sum_probs=46.1
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCC-CChhhHHHHHHHhhcCCCeEEEEEeCh
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPK-GSRNQIIDTLLTVSSMMSRILILHTYD 232 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~-~~~~~~~~~l~~ik~~~~~viil~~~~ 232 (574)
.++++.++..|+ .+.++..++. ..+.+.+++.|..+.. ++.. ....|....++.+++.++++||++...
T Consensus 21 l~LA~~l~~~g~-~v~f~~~~~~------~~~~~~i~~~g~~v~~---~~~~~~~~~d~~~~~~~l~~~~~d~vV~D~y~ 90 (279)
T TIGR03590 21 LTLARALHAQGA-EVAFACKPLP------GDLIDLLLSAGFPVYE---LPDESSRYDDALELINLLEEEKFDILIVDHYG 90 (279)
T ss_pred HHHHHHHHHCCC-EEEEEeCCCC------HHHHHHHHHcCCeEEE---ecCCCchhhhHHHHHHHHHhcCCCEEEEcCCC
Confidence 456666766665 5666654442 2335667778887643 2211 123456667777777789999998753
Q ss_pred HHHHHHHHHHHH
Q 008205 233 IWGLEVLNAAKH 244 (574)
Q Consensus 233 ~~~~~il~~a~~ 244 (574)
-.. ...+..+.
T Consensus 91 ~~~-~~~~~~k~ 101 (279)
T TIGR03590 91 LDA-DWEKLIKE 101 (279)
T ss_pred CCH-HHHHHHHH
Confidence 222 23444444
No 477
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=25.67 E-value=2.5e+02 Score=26.38 Aligned_cols=72 Identities=13% Similarity=0.218 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHHHHHhhccCCccEE
Q 008205 47 KVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHLVSHIANEFQVPLL 125 (574)
Q Consensus 47 ~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~I 125 (574)
.....-+..+|++|++..++- -+. -++..|...|+..++...++=....++.+-| +...|.++|..+.|=+-
T Consensus 156 PdELeKm~~~Vd~i~~~~~~~-~~P-lFIsvDPeRD~~~~~~eY~~eF~pkllGLTG-----T~eqvk~vak~yRVYfs 227 (280)
T KOG2792|consen 156 PDELEKMSAVVDEIEAKPGLP-PVP-LFISVDPERDSVEVVAEYVSEFHPKLLGLTG-----TTEQVKQVAKKYRVYFS 227 (280)
T ss_pred hHHHHHHHHHHHHHhccCCCC-ccc-eEEEeCcccCCHHHHHHHHHhcChhhhcccC-----CHHHHHHHHHHhEEeec
Confidence 456677888999999998763 232 3445566667666654444333334443333 34577888988887543
No 478
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=25.38 E-value=5.3e+02 Score=23.59 Aligned_cols=84 Identities=14% Similarity=0.007 Sum_probs=54.5
Q ss_pred eEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh----HHHHHHHHH
Q 008205 166 RNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD----IWGLEVLNA 241 (574)
Q Consensus 166 ~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~----~~~~~il~~ 241 (574)
.++.+.....+...-+..-+...++..|+++.+- ..+.. ..+.++.+++.++++|.+.+.. ..+..++++
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~L---G~~vp---~e~~v~~~~~~~~~~V~lS~~~~~~~~~~~~~i~~ 162 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDL---GVMVP---IEKILEAAKEHKADIIGLSGLLVPSLDEMVEVAEE 162 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEEC---CCCCC---HHHHHHHHHHcCCCEEEEccchhccHHHHHHHHHH
Confidence 3566666666666667788888889999988653 22222 3455666677789988886542 556677777
Q ss_pred HHHCCCCCCCeEEEEe
Q 008205 242 AKHLRMMESGYVWIVT 257 (574)
Q Consensus 242 a~~~gm~~~~~~~i~~ 257 (574)
.++.+. .-.+|++.
T Consensus 163 L~~~~~--~~~i~vGG 176 (213)
T cd02069 163 MNRRGI--KIPLLIGG 176 (213)
T ss_pred HHhcCC--CCeEEEEC
Confidence 777765 33455554
No 479
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.35 E-value=3.2e+02 Score=25.48 Aligned_cols=61 Identities=11% Similarity=-0.020 Sum_probs=40.4
Q ss_pred EEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC
Q 008205 168 VIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (574)
Q Consensus 168 v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~ 231 (574)
|+++..+ +.+.....+.+.+.+++.|+.+...... .+...-...++.+...+.+.||+...
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~gy~v~~~~~~---~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (269)
T cd06293 2 IGLVVPDIANPFFAELADAVEEEADARGLSLVLCATR---NRPERELTYLRWLDTNHVDGLIFVTN 64 (269)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 5666654 4556677788888888889877544221 23334456677777788888888643
No 480
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=25.34 E-value=6.5e+02 Score=24.63 Aligned_cols=78 Identities=17% Similarity=0.187 Sum_probs=43.4
Q ss_pred CcEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHH-----HcCCeEEEEE
Q 008205 97 ETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVD-----YFGWRNVIAL 171 (574)
Q Consensus 97 ~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~-----~~~W~~v~ii 171 (574)
..+.|||..- +.+.....-...++|++.-.++.+. | .-+.-++..++ .|+=.+++++
T Consensus 77 d~VLIIGGp~-AVs~~yE~~Lks~GitV~RigG~nR------~-----------ETa~~v~~~~~~~yp~af~n~kvvvv 138 (337)
T COG2247 77 DLVLIIGGPI-AVSPNYENALKSLGITVKRIGGANR------Y-----------ETAEKVAKFFREDYPNAFKNVKVVVV 138 (337)
T ss_pred ceEEEECCCC-cCChhHHHHHHhCCcEEEEecCcch------H-----------HHHHHHHHHHHhhchhhhcCeEEEEE
Confidence 5666776332 2333445556678888776544321 1 12344555553 2344588888
Q ss_pred EEcCCCCcchHHHHHHHHhhcCcEEEE
Q 008205 172 YVDDDHGRNGIAALGDKLAEKRCRLSH 198 (574)
Q Consensus 172 ~~~~~~g~~~~~~l~~~~~~~g~~v~~ 198 (574)
|.-| | ...+++.+++ |++...
T Consensus 139 ~GwD-y----~~~~~e~~k~-~~~p~~ 159 (337)
T COG2247 139 YGWD-Y----ADALMELMKE-GIVPVI 159 (337)
T ss_pred eccc-c----HHHHHHHHhc-CcceeE
Confidence 8544 2 2277888887 876543
No 481
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=25.33 E-value=4.6e+02 Score=25.70 Aligned_cols=67 Identities=18% Similarity=0.119 Sum_probs=46.1
Q ss_pred cCCeEEEEEEEcCCC--C---cchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC
Q 008205 163 FGWRNVIALYVDDDH--G---RNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (574)
Q Consensus 163 ~~W~~v~ii~~~~~~--g---~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~ 231 (574)
|.-.++++|...++- | ......+.+.+++.|..+.....++ .+...+...++++.+.+.++||..+.
T Consensus 157 ~r~~rv~II~TG~Ev~~G~i~D~~~~~l~~~L~~~G~~v~~~~iv~--Dd~~~I~~ai~~~~~~g~DlIItTGG 228 (312)
T cd03522 157 FRPLRVGLIVTGSEVYGGRIEDKFGPVLRARLAALGVELVEQVIVP--HDEAAIAAAIAEALEAGAELLILTGG 228 (312)
T ss_pred cCCCEEEEEEcCCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcC--CCHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 445678888765532 2 2345678888889999887766665 45667778888776666888888754
No 482
>COG3439 Uncharacterized conserved protein [Function unknown]
Probab=25.26 E-value=2.2e+02 Score=23.92 Aligned_cols=70 Identities=11% Similarity=0.155 Sum_probs=52.3
Q ss_pred cchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHH-h-hcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 179 RNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLT-V-SSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 179 ~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~-i-k~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
....+++.+.+++.|..|... ++ ....+++ . ++..+-.|+..|.+..+..+|.+-.+.|+..+-.+.+.
T Consensus 22 ~E~i~~l~~~lk~~G~~V~~~--id-------~~e~l~~~g~~~~~p~~Il~~cnP~~g~~ll~~~p~~gl~lPcrv~V~ 92 (137)
T COG3439 22 DETIERLEEKLKKNGFKVFTE--ID-------HAEALKNAGVLDIPPYTILVFCNPKAGTPLLSKNPEFGLLLPCRVLVY 92 (137)
T ss_pred HHHHHHHHHHHHhCCCeEEEE--ec-------HHHHHHhcCcCCCCCeEEEEEcCCcccchhhccChhhhccCCeEEEEE
Confidence 356789999999999887543 22 3445554 3 45677788889999999999999999998877666664
Q ss_pred e
Q 008205 257 T 257 (574)
Q Consensus 257 ~ 257 (574)
.
T Consensus 93 e 93 (137)
T COG3439 93 E 93 (137)
T ss_pred E
Confidence 3
No 483
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=25.25 E-value=1.7e+02 Score=21.62 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=23.1
Q ss_pred CeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEE
Q 008205 165 WRNVIALYVDDDHGRNGIAALGDKLAEKRCRLS 197 (574)
Q Consensus 165 W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~ 197 (574)
-+++.+.++.|..|+.....+.+.+...|+.+.
T Consensus 46 ~~~Vii~~D~D~~G~~~a~~i~~~l~~~gi~v~ 78 (81)
T PF13662_consen 46 VKEVIIAFDNDKAGEKAAQKIAKKLLPLGIRVT 78 (81)
T ss_dssp -SEEEEEEESSHHHHHHHHHHHHHHG-------
T ss_pred CceEEEEeCcCHHHHHHHHHHHHHHHhhccccc
Confidence 489999999999899999999998887777653
No 484
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=25.21 E-value=3.5e+02 Score=21.54 Aligned_cols=69 Identities=13% Similarity=0.030 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEee-cCCCCChhhHHHHHHHhhcCCCeEEEEE
Q 008205 153 MAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVP-LSPKGSRNQIIDTLLTVSSMMSRILILH 229 (574)
Q Consensus 153 ~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~-~~~~~~~~~~~~~l~~ik~~~~~viil~ 229 (574)
...++.+++..||+ +.++- -+. ..+.+.+.+.+.+..+..... .. ........+++.+|+..+++.++.
T Consensus 17 l~~la~~l~~~G~~-v~~~d-~~~----~~~~l~~~~~~~~pd~V~iS~~~~--~~~~~~~~l~~~~k~~~p~~~iv~ 86 (121)
T PF02310_consen 17 LLYLAAYLRKAGHE-VDILD-ANV----PPEELVEALRAERPDVVGISVSMT--PNLPEAKRLARAIKERNPNIPIVV 86 (121)
T ss_dssp HHHHHHHHHHTTBE-EEEEE-SSB-----HHHHHHHHHHTTCSEEEEEESSS--THHHHHHHHHHHHHTTCTTSEEEE
T ss_pred HHHHHHHHHHCCCe-EEEEC-CCC----CHHHHHHHHhcCCCcEEEEEccCc--CcHHHHHHHHHHHHhcCCCCEEEE
Confidence 35677788999994 44442 221 236777777766665554433 22 344566778888888766644444
No 485
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional
Probab=25.18 E-value=2.3e+02 Score=27.57 Aligned_cols=57 Identities=11% Similarity=-0.003 Sum_probs=27.6
Q ss_pred cCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEE
Q 008205 163 FGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILH 229 (574)
Q Consensus 163 ~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~ 229 (574)
+.=+++++ .. |......+.+.+++.|+......... .+ ..+....+.....+.++..
T Consensus 127 L~Gk~I~~--~~---gs~~~~~l~~~l~~~g~~~~dv~~v~--~~---~~~~~~al~~G~vDa~~~~ 183 (314)
T PRK11553 127 LKGHKVAF--QK---GSSSHNLLLRALRKAGLKFTDIQPTY--LT---PADARAAFQQGNVDAWAIW 183 (314)
T ss_pred hCCCEEee--cC---CCcHHHHHHHHHHHcCCCHHHeEEEe--cC---hHHHHHHHHcCCCCEEEEc
Confidence 34456664 22 22344556666777776421111111 11 2234556666777777654
No 486
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=25.04 E-value=3.3e+02 Score=25.56 Aligned_cols=84 Identities=12% Similarity=-0.024 Sum_probs=45.6
Q ss_pred HHHHHHH--HHHc---CCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEE
Q 008205 153 MAAIADI--VDYF---GWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILI 227 (574)
Q Consensus 153 ~~ai~~l--l~~~---~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~vii 227 (574)
+..++++ +... .-.+|.++..+. ....+.+.+++.|..+.....+.......+.......+.....+.|+
T Consensus 113 se~Ll~~~~l~~~~~~~~~~vLi~rg~~-----~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~~~d~v~ 187 (255)
T PRK05752 113 SEALLALPALRQALAVPDPRVLIMRGEG-----GRELLAERLREQGASVDYLELYRRCLPDYPAGTLLQRVEAERLNGLV 187 (255)
T ss_pred cHHHHhChhhhccccCCCCEEEEEccCc-----cHHHHHHHHHHCCCEEeEEEEEeecCCCCCHHHHHHHHHhCCCCEEE
Confidence 4566654 3221 234666654332 45678899999998776544332111111223444555555566554
Q ss_pred EEeChHHHHHHHHHH
Q 008205 228 LHTYDIWGLEVLNAA 242 (574)
Q Consensus 228 l~~~~~~~~~il~~a 242 (574)
+ .++..+..++...
T Consensus 188 f-tS~~~~~~~~~~~ 201 (255)
T PRK05752 188 V-SSGQGFEHLQQLA 201 (255)
T ss_pred E-CCHHHHHHHHHHh
Confidence 4 4777777776654
No 487
>PRK07524 hypothetical protein; Provisional
Probab=24.95 E-value=2.4e+02 Score=30.11 Aligned_cols=60 Identities=13% Similarity=0.184 Sum_probs=41.3
Q ss_pred HHHHHHHHhHhc--CcEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEe
Q 008205 85 LGMVEALTLLEN--ETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRT 145 (574)
Q Consensus 85 ~a~~~~~~l~~~--~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~ 145 (574)
..++.+.+++.+ .++.++|.........+..+++.+++|+++.......+. ...|.++-.
T Consensus 189 ~~i~~~~~~L~~AkrPvil~G~g~~~a~~~l~~lae~l~~pV~tt~~~kg~~p-~~hp~~~G~ 250 (535)
T PRK07524 189 AALAQAAERLAAARRPLILAGGGALAAAAALRALAERLDAPVALTINAKGLLP-AGHPLLLGA 250 (535)
T ss_pred HHHHHHHHHHHhCCCcEEEECCChHHHHHHHHHHHHHHCCCEEEcccccccCC-CCChhhccC
Confidence 345666777765 788899988877778899999999999997533222232 234555543
No 488
>PRK06760 hypothetical protein; Provisional
Probab=24.94 E-value=65 Score=29.17 Aligned_cols=35 Identities=17% Similarity=0.139 Sum_probs=19.5
Q ss_pred CchhHHHHHHHHHHHHhhcccccCC--CCCCCCeEEEE
Q 008205 1 MTKIYLLALVVVYNFCFSAGISMNG--VSTIPPVLNIG 36 (574)
Q Consensus 1 M~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~IG 36 (574)
|||+.-+++++.+.+.+..| |+-. .....+.+.+|
T Consensus 1 MKK~l~i~~~~~i~~~~fsa-CS~~~~~~PaNGvl~iG 37 (223)
T PRK06760 1 MKKTLTIFMLTILLLISFSA-CSKKENSFPANGVLIIG 37 (223)
T ss_pred CceeeehHHHHHHHHHHHhc-cCCCcccCCccceEEEc
Confidence 89887555555554555455 5543 34445555555
No 489
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=24.90 E-value=3.7e+02 Score=23.45 Aligned_cols=73 Identities=21% Similarity=0.274 Sum_probs=39.7
Q ss_pred HHHHHHHHH-HHc---CCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeE
Q 008205 152 QMAAIADIV-DYF---GWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRI 225 (574)
Q Consensus 152 ~~~ai~~ll-~~~---~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~v 225 (574)
-+.++++++ +.+ ..++|.++......|-.++..- ..|.+.|++|......+......+....++.+++.+.++
T Consensus 8 Ag~~~a~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~A-R~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ 84 (169)
T PF03853_consen 8 AGRAIAELIRKLFGSPKGPRVLILCGPGNNGGDGLVAA-RHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKI 84 (169)
T ss_dssp HHHHHHHHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHH-HHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EE
T ss_pred HHHHHHHHHHHHhcccCCCeEEEEECCCCChHHHHHHH-HHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcE
Confidence 355667665 445 5788888886655444444433 344667887766332232234455666666666665443
No 490
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=24.89 E-value=5.4e+02 Score=24.90 Aligned_cols=79 Identities=10% Similarity=-0.054 Sum_probs=46.6
Q ss_pred CCeEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHH
Q 008205 164 GWRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNA 241 (574)
Q Consensus 164 ~W~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~ 241 (574)
+-+.|+++..+ +.|.......+.+.+.+.|..+..... . .+.......++.+...+.+-||+..... ...++..
T Consensus 58 ~~~~Igvv~~~~~~~f~~~l~~~i~~~~~~~g~~~~i~~~-~--~~~~~~~~~~~~l~~~~vdGiIi~~~~~-~~~~~~~ 133 (329)
T TIGR01481 58 RTTTVGVIIPDISNIYYAELARGIEDIATMYKYNIILSNS-D--EDPEKEVQVLNTLLSKQVDGIIFMGGTI-TEKLREE 133 (329)
T ss_pred CCCEEEEEeCCCCchhHHHHHHHHHHHHHHcCCEEEEEeC-C--CCHHHHHHHHHHHHhCCCCEEEEeCCCC-ChHHHHH
Confidence 34578888754 345556677888888888887754321 1 2333345566677777788888764321 1223444
Q ss_pred HHHCC
Q 008205 242 AKHLR 246 (574)
Q Consensus 242 a~~~g 246 (574)
+.+.+
T Consensus 134 l~~~~ 138 (329)
T TIGR01481 134 FSRSP 138 (329)
T ss_pred HHhcC
Confidence 55544
No 491
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=24.73 E-value=4.2e+02 Score=22.22 Aligned_cols=77 Identities=10% Similarity=0.030 Sum_probs=50.9
Q ss_pred eEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC----hHHHHHHHHH
Q 008205 166 RNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY----DIWGLEVLNA 241 (574)
Q Consensus 166 ~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~----~~~~~~il~~ 241 (574)
.++.+.....+....+..-+...++..|+++.+- ..... ..+.++.+.+.++++|.+.+. ...+..++.+
T Consensus 4 ~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~L---G~~vp---~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~ 77 (137)
T PRK02261 4 KTVVLGVIGADCHAVGNKILDRALTEAGFEVINL---GVMTS---QEEFIDAAIETDADAILVSSLYGHGEIDCRGLREK 77 (137)
T ss_pred CEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEEC---CCCCC---HHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHH
Confidence 3454554455555566778888889999998753 22122 345666677788998888653 3557778888
Q ss_pred HHHCCCC
Q 008205 242 AKHLRMM 248 (574)
Q Consensus 242 a~~~gm~ 248 (574)
.++.+..
T Consensus 78 L~~~~~~ 84 (137)
T PRK02261 78 CIEAGLG 84 (137)
T ss_pred HHhcCCC
Confidence 8887753
No 492
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=24.73 E-value=59 Score=25.34 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=3.8
Q ss_pred hhHHHHHHHH
Q 008205 3 KIYLLALVVV 12 (574)
Q Consensus 3 ~~~~~~~~~~ 12 (574)
|.++++.++|
T Consensus 4 K~~llL~l~L 13 (95)
T PF07172_consen 4 KAFLLLGLLL 13 (95)
T ss_pred hHHHHHHHHH
Confidence 3343333333
No 493
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=24.57 E-value=4.1e+02 Score=22.11 Aligned_cols=72 Identities=13% Similarity=0.169 Sum_probs=41.9
Q ss_pred cchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHHHHHhhccCCccE
Q 008205 45 IGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHLVSHIANEFQVPL 124 (574)
Q Consensus 45 ~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~ 124 (574)
.|+.-..++...+.++| |+.+++....+.. .... .+++...-++|.+.........+..+|...++|+
T Consensus 50 vG~~Ka~~~~~~l~~~~------p~v~i~~~~~~~~--~~~~----~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~ 117 (143)
T cd01483 50 IGKPKAEVAARRLNELN------PGVNVTAVPEGIS--EDNL----DDFLDGVDLVIDAIDNIAVRRALNRACKELGIPV 117 (143)
T ss_pred CCChHHHHHHHHHHHHC------CCcEEEEEeeecC--hhhH----HHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 45555566666666666 3455555443322 1111 3444443344444455556677899999999999
Q ss_pred Eecc
Q 008205 125 LSFA 128 (574)
Q Consensus 125 Is~~ 128 (574)
|..+
T Consensus 118 i~~~ 121 (143)
T cd01483 118 IDAG 121 (143)
T ss_pred EEEc
Confidence 9854
No 494
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=24.56 E-value=1.6e+02 Score=32.08 Aligned_cols=61 Identities=10% Similarity=0.088 Sum_probs=42.8
Q ss_pred HHHHHHHHhHhc--CcEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEec
Q 008205 85 LGMVEALTLLEN--ETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTT 146 (574)
Q Consensus 85 ~a~~~~~~l~~~--~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ 146 (574)
..++.+.+++.+ .++.++|.........+..+++.+++|+++.... ...-+..+|+++-+.
T Consensus 196 ~~i~~a~~~L~~AkrPvi~~G~g~~~a~~~l~~lae~~~~PV~tt~~g-kg~~~e~hp~~~G~~ 258 (597)
T PRK08273 196 EDLRRAAEVLNAGRKVAILVGAGALGATDEVIAVAERLGAGVAKALLG-KAALPDDLPWVTGSI 258 (597)
T ss_pred HHHHHHHHHHhcCCCEEEEECcchHhHHHHHHHHHHHhCCceeecccC-cccCCCCCccceecC
Confidence 345667777765 7888899888777888999999999999974322 222234457776554
No 495
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=24.53 E-value=3.8e+02 Score=25.04 Aligned_cols=76 Identities=14% Similarity=0.011 Sum_probs=41.2
Q ss_pred EEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChH----HHHHHHHH
Q 008205 168 VIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI----WGLEVLNA 241 (574)
Q Consensus 168 v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~----~~~~il~~ 241 (574)
|+++..+ +.|.....+.+.+.+++.|+.+..... . .+...-...++.+...+.+.||+..... .....+++
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~ 78 (273)
T cd01541 2 IGVITTYISDYIFPSIIRGIESVLSEKGYSLLLAST-N--NDPERERKCLENMLSQGIDGLIIEPTKSALPNPNIDLYLK 78 (273)
T ss_pred eEEEeCCccchhHHHHHHHHHHHHHHcCCEEEEEeC-C--CCHHHHHHHHHHHHHcCCCEEEEeccccccccccHHHHHH
Confidence 3444432 345556667777777778877654321 1 2233334566667677777777753221 12244555
Q ss_pred HHHCC
Q 008205 242 AKHLR 246 (574)
Q Consensus 242 a~~~g 246 (574)
+.+.+
T Consensus 79 ~~~~~ 83 (273)
T cd01541 79 LEKLG 83 (273)
T ss_pred HHHCC
Confidence 65554
No 496
>PF11839 DUF3359: Protein of unknown function (DUF3359); InterPro: IPR021793 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=24.52 E-value=68 Score=24.93 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=10.8
Q ss_pred CchhHHHHHHHHHHHHhhcccccC
Q 008205 1 MTKIYLLALVVVYNFCFSAGISMN 24 (574)
Q Consensus 1 M~~~~~~~~~~~~~~~~~~~~~~~ 24 (574)
||+.+ +..+++ .++|+.| |.+
T Consensus 1 M~k~l-~sal~~-~~~L~~G-CAs 21 (96)
T PF11839_consen 1 MKKLL-LSALAL-AALLLAG-CAS 21 (96)
T ss_pred CchHH-HHHHHH-HHHHHhH-ccC
Confidence 78854 333333 3456666 643
No 497
>PRK13054 lipid kinase; Reviewed
Probab=24.51 E-value=4.8e+02 Score=25.26 Aligned_cols=75 Identities=13% Similarity=0.039 Sum_probs=44.2
Q ss_pred eEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHH
Q 008205 166 RNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKH 244 (574)
Q Consensus 166 ~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~ 244 (574)
+++.+|+-....+......+...+.+.|+.+.....- ...+...+.++....+.++||+.+.......++..+.+
T Consensus 4 ~~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t~----~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~~ 78 (300)
T PRK13054 4 PKSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTW----EKGDAARYVEEALALGVATVIAGGGDGTINEVATALAQ 78 (300)
T ss_pred ceEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEec----CCCcHHHHHHHHHHcCCCEEEEECCccHHHHHHHHHHh
Confidence 4677777422223344556666788888775442211 22334556666555667778877766667777776654
No 498
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=24.47 E-value=5.7e+02 Score=23.65 Aligned_cols=118 Identities=17% Similarity=0.126 Sum_probs=56.3
Q ss_pred EEEEEeccCC--ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc--CcEEEEcCCChHH
Q 008205 34 NIGAVFALNS--TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN--ETVAIIGPQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~~--~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~--~v~aiiGp~~s~~ 109 (574)
+|+++..... ........+++.++++.+-. . .........+...+.+.+.+++.+ .+.+|++.....
T Consensus 114 ~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~- 184 (265)
T cd06291 114 HIAHIGGPNNTVSPTNLRYEGFLDVLKENGLE------V--RIIEIQENFDDAEKKEEIKELLEEYPDIDGIFASNDLT- 184 (265)
T ss_pred EEEEEccCcccccchHHHHHHHHHHHHHcCCC------C--ChheeeccccchHHHHHHHHHHhCCCCCCEEEECChHH-
Confidence 5777754332 23345567888887663211 1 111111222223355666777765 468888855543
Q ss_pred HHHHHHhhccCCc--c-EEecccCCC-CcCCCCCCceEEecCChHHHHHHHHHHH
Q 008205 110 AHLVSHIANEFQV--P-LLSFAATDP-SLSSLQYPFFVRTTQSDLYQMAAIADIV 160 (574)
Q Consensus 110 ~~~va~~~~~~~i--P-~Is~~~~~~-~ls~~~~~~~~r~~ps~~~~~~ai~~ll 160 (574)
+..+...+.+.++ | -|+..+.+. .......|.+..+..+...++...++.+
T Consensus 185 a~~~~~al~~~g~~vp~di~v~g~d~~~~~~~~~~~~~tv~~~~~~~g~~a~~~l 239 (265)
T cd06291 185 AILVLKEAQQRGIRVPEDLQIIGYDGTKLTRLYTPELTTIRQPIEEIAKTAVDLL 239 (265)
T ss_pred HHHHHHHHHHcCCCCCcceEEeccCChHHHhhcCCCceeecCCHHHHHHHHHHHH
Confidence 3344455544443 4 133222221 1111223444555555666666666654
No 499
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=24.44 E-value=30 Score=22.16 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHHHhhcccccCCCCCCCCeEEEEEEeccCC
Q 008205 1 MTKIYLLALVVVYNFCFSAGISMNGVSTIPPVLNIGAVFALNS 43 (574)
Q Consensus 1 M~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~IG~l~~~~~ 43 (574)
|||.+++.++++..++.++- +..-.++.=|.+.|.++
T Consensus 1 MkKi~~~~i~~~~~~L~aCQ------aN~iRDvqGGtVaPSSs 37 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAACQ------ANYIRDVQGGTVAPSSS 37 (46)
T ss_pred CcEEEEeHHHHHHHHHHHhh------hcceecCCCceECCCcc
No 500
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=24.41 E-value=6.8e+02 Score=24.52 Aligned_cols=136 Identities=15% Similarity=0.149 Sum_probs=0.0
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChHHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSVIAHL 112 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~~~~ 112 (574)
.|+.+|-..+ -+.+.+|+.|+.++ +|.-+.+...++.-.--+.++-..+.++. ++.+|+ ........
T Consensus 47 ~v~~lF~epS---TRTR~SFe~A~~~L-------Gg~~~~~~~~~s~~~kgEsl~Dtarvls~y~~D~iv--~R~~~~~~ 114 (310)
T PRK13814 47 VVANLFFEPS---TRTRNSFEIAAKRL-------GAMVLNPNLKISAISKGETLFDTIKTLEAMGVYFFI--VRHSENET 114 (310)
T ss_pred EEEEEEecCc---chhHHHHHHHHHHh-------CCeEEECCCccccCCCCCCHHHHHHHHHHhCCCEEE--EeCCchhH
Q ss_pred HHHhhcc-CCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcC-CeEEEEEEEcCCCCcchHHHHHH
Q 008205 113 VSHIANE-FQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG-WRNVIALYVDDDHGRNGIAALGD 187 (574)
Q Consensus 113 va~~~~~-~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~-W~~v~ii~~~~~~g~~~~~~l~~ 187 (574)
+..++.. ..+|+|. ..+++...|+ ++++|++ +++| ++.+.+.+-.|.-.......+..
T Consensus 115 ~~~~a~~~~~vPvIN-----ag~g~~~HPt------------QaLaDl~Ti~e~~g~l~g~~va~vGD~~~~rv~~Sl~~ 177 (310)
T PRK13814 115 PEQIAKQLSSGVVIN-----AGDGNHQHPS------------QALIDLMTIKQHKPHWNKLCVTIIGDIRHSRVANSLMD 177 (310)
T ss_pred HHHHHHhCCCCCeEE-----CCcCCCCCch------------HHHHHHHHHHHHhCCcCCcEEEEECCCCCCcHHHHHHH
Q ss_pred HHhhcCc-EEEE
Q 008205 188 KLAEKRC-RLSH 198 (574)
Q Consensus 188 ~~~~~g~-~v~~ 198 (574)
.+...|. .+..
T Consensus 178 ~~a~~g~~~v~~ 189 (310)
T PRK13814 178 GLVTMGVPEIRL 189 (310)
T ss_pred HHHHcCCCEEEE
Done!