Query 008205
Match_columns 574
No_of_seqs 289 out of 2989
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 20:39:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008205.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008205hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 1.7E-61 5.9E-66 540.7 42.0 471 31-572 1-490 (823)
2 3o21_A Glutamate receptor 3; p 100.0 5.3E-54 1.8E-58 436.8 42.6 373 30-428 3-380 (389)
3 4gpa_A Glutamate receptor 4; P 100.0 1.4E-53 4.7E-58 435.3 44.7 377 29-430 2-380 (389)
4 3om0_A Glutamate receptor, ion 100.0 7.7E-52 2.6E-56 422.5 38.0 375 31-429 3-382 (393)
5 3hsy_A Glutamate receptor 2; l 100.0 1.3E-51 4.6E-56 417.7 37.2 367 31-427 1-373 (376)
6 3h6g_A Glutamate receptor, ion 100.0 2.5E-51 8.4E-56 419.2 39.1 376 30-430 2-385 (395)
7 3saj_A Glutamate receptor 1; r 100.0 4.8E-50 1.6E-54 407.7 39.0 370 28-430 6-379 (384)
8 4f11_A Gamma-aminobutyric acid 100.0 3.5E-50 1.2E-54 415.8 36.6 368 28-422 10-404 (433)
9 3sm9_A Mglur3, metabotropic gl 100.0 1.6E-49 5.4E-54 413.5 40.2 372 27-420 8-462 (479)
10 2e4u_A Metabotropic glutamate 100.0 5.7E-49 2E-53 418.1 45.1 393 28-464 10-485 (555)
11 3ks9_A Mglur1, metabotropic gl 100.0 8.4E-49 2.9E-53 409.8 42.2 376 26-421 11-475 (496)
12 1jdp_A NPR-C, atrial natriuret 100.0 1.7E-48 5.7E-53 404.1 43.4 367 29-424 6-397 (441)
13 3qek_A NMDA glutamate receptor 100.0 4.4E-49 1.5E-53 400.8 35.4 340 29-421 2-369 (384)
14 1dp4_A Atrial natriuretic pept 100.0 1.6E-48 5.6E-53 403.7 39.6 363 31-423 1-398 (435)
15 3mq4_A Mglur7, metabotropic gl 100.0 3.8E-49 1.3E-53 411.7 28.8 374 27-420 11-467 (481)
16 3qel_B Glutamate [NMDA] recept 100.0 5.7E-46 2E-50 372.7 28.0 341 30-428 2-357 (364)
17 3i45_A Twin-arginine transloca 100.0 4.6E-39 1.6E-43 327.4 34.8 356 30-430 3-368 (387)
18 3ipc_A ABC transporter, substr 100.0 1.7E-38 5.9E-43 319.5 31.4 344 31-422 1-352 (356)
19 3h5l_A Putative branched-chain 100.0 8E-39 2.7E-43 329.2 28.4 346 28-413 10-388 (419)
20 3td9_A Branched chain amino ac 100.0 8.3E-38 2.8E-42 315.8 33.1 342 28-422 12-363 (366)
21 3hut_A Putative branched-chain 100.0 7.6E-37 2.6E-41 307.8 33.4 344 30-421 2-353 (358)
22 4f06_A Extracellular ligand-bi 100.0 6.9E-37 2.4E-41 309.2 32.5 336 30-409 3-346 (371)
23 1usg_A Leucine-specific bindin 100.0 8.6E-37 2.9E-41 305.9 31.8 339 31-416 1-345 (346)
24 3lkb_A Probable branched-chain 100.0 5.2E-37 1.8E-41 312.9 28.4 357 29-426 4-379 (392)
25 4evq_A Putative ABC transporte 100.0 4.8E-36 1.6E-40 304.0 34.6 345 28-421 12-363 (375)
26 3i09_A Periplasmic branched-ch 100.0 5.3E-36 1.8E-40 303.5 34.9 333 30-412 2-342 (375)
27 4gnr_A ABC transporter substra 100.0 6.8E-36 2.3E-40 300.1 33.9 338 28-418 3-350 (353)
28 3eaf_A ABC transporter, substr 100.0 6.3E-36 2.2E-40 304.7 32.4 350 30-422 2-372 (391)
29 3n0w_A ABC branched chain amin 100.0 3.1E-36 1.1E-40 305.7 29.7 334 30-412 4-346 (379)
30 4eyg_A Twin-arginine transloca 100.0 1.1E-35 3.7E-40 300.5 32.4 346 29-421 3-359 (368)
31 3n0x_A Possible substrate bind 100.0 2.3E-36 7.8E-41 305.9 25.6 331 31-411 3-347 (374)
32 3lop_A Substrate binding perip 100.0 1.6E-35 5.4E-40 298.8 30.8 338 30-413 3-353 (364)
33 3sg0_A Extracellular ligand-bi 100.0 4.8E-35 1.7E-39 297.8 23.0 343 29-416 24-385 (386)
34 1pea_A Amidase operon; gene re 100.0 2.5E-32 8.4E-37 277.5 34.0 346 30-419 5-357 (385)
35 3snr_A Extracellular ligand-bi 100.0 5.4E-33 1.8E-37 280.0 26.4 341 29-416 4-361 (362)
36 2h4a_A YRAM (HI1655); perplasm 99.9 1.1E-25 3.7E-30 220.5 23.0 307 34-416 2-317 (325)
37 3ckm_A YRAM (HI1655), LPOA; pe 99.9 7E-26 2.4E-30 224.2 21.2 314 33-420 3-323 (327)
38 1pb7_A N-methyl-D-aspartate re 99.2 3.3E-12 1.1E-16 123.6 3.4 71 492-571 60-144 (292)
39 2rc8_A Glutamate [NMDA] recept 99.2 5E-12 1.7E-16 122.6 1.8 69 494-571 67-143 (294)
40 2a5s_A N-methyl-D-aspartate re 99.1 2.1E-11 7.3E-16 117.4 2.9 104 459-571 15-132 (284)
41 3g3k_A Glutamate receptor, ion 98.8 1.1E-09 3.7E-14 103.8 3.9 94 469-571 3-109 (259)
42 2v3u_A Glutamate receptor delt 98.8 3.2E-09 1.1E-13 100.8 3.9 90 469-570 2-104 (265)
43 1yae_A Glutamate receptor, ion 98.7 3.2E-09 1.1E-13 103.7 3.6 91 469-571 12-118 (312)
44 1mqi_A Glutamate receptor 2; G 98.6 1.2E-08 4E-13 96.8 4.0 91 469-571 3-109 (263)
45 4h5g_A Amino acid ABC superfam 98.6 8.9E-09 3E-13 96.5 3.0 84 470-571 12-101 (243)
46 4gvo_A LMO2349 protein; struct 98.6 9.5E-09 3.3E-13 96.2 3.0 82 469-569 8-94 (243)
47 3i6v_A Periplasmic His/Glu/Gln 98.4 8.5E-08 2.9E-12 89.0 4.0 85 469-572 4-92 (232)
48 3brq_A HTH-type transcriptiona 98.3 1.8E-05 6E-10 76.0 16.7 206 30-253 17-230 (296)
49 3ksm_A ABC-type sugar transpor 98.3 4.6E-05 1.6E-09 72.2 18.9 208 33-257 1-220 (276)
50 2h3h_A Sugar ABC transporter, 98.3 7.4E-05 2.5E-09 72.4 20.6 207 33-257 2-215 (313)
51 3kzg_A Arginine 3RD transport 98.2 6.1E-07 2.1E-11 83.3 4.7 84 470-571 3-90 (237)
52 1dbq_A Purine repressor; trans 98.2 7.8E-05 2.7E-09 71.2 19.4 208 31-255 6-219 (289)
53 3kbr_A Cyclohexadienyl dehydra 98.2 4.7E-07 1.6E-11 84.1 3.1 84 469-571 14-101 (239)
54 3d02_A Putative LACI-type tran 98.2 0.00018 6.2E-09 69.1 21.6 211 31-256 3-221 (303)
55 3k4u_A Binding component of AB 98.1 7.5E-07 2.6E-11 83.1 2.8 84 469-571 4-91 (245)
56 4f3p_A Glutamine-binding perip 98.1 1.4E-06 4.7E-11 81.6 4.3 82 469-570 23-108 (249)
57 4dz1_A DALS D-alanine transpor 98.1 2E-06 7E-11 81.0 5.2 83 469-570 28-114 (259)
58 2qh8_A Uncharacterized protein 98.1 0.0002 6.8E-09 69.0 19.2 188 30-231 6-202 (302)
59 3tql_A Arginine-binding protei 98.1 2E-06 6.7E-11 79.0 4.7 82 470-570 2-87 (227)
60 3brs_A Periplasmic binding pro 98.1 0.00022 7.5E-09 68.0 19.3 209 31-256 4-222 (289)
61 2qu7_A Putative transcriptiona 98.1 3.3E-05 1.1E-09 73.8 13.5 206 30-255 6-219 (288)
62 4eq9_A ABC transporter substra 98.1 9.3E-07 3.2E-11 82.4 2.1 83 469-571 7-94 (246)
63 1lst_A Lysine, arginine, ornit 98.1 1.5E-06 5.1E-11 80.6 3.5 83 470-571 4-90 (239)
64 2iee_A ORF2, probable ABC tran 98.1 1.4E-06 4.8E-11 82.7 3.4 83 470-570 21-109 (271)
65 3rot_A ABC sugar transporter, 98.1 0.00028 9.6E-09 67.7 19.8 203 32-250 3-215 (297)
66 3hv1_A Polar amino acid ABC up 98.1 1.5E-06 5.3E-11 82.2 3.6 84 469-571 20-107 (268)
67 2rjo_A Twin-arginine transloca 98.1 0.00065 2.2E-08 66.3 22.5 205 31-248 4-222 (332)
68 3gbv_A Putative LACI-family tr 98.1 0.00013 4.3E-09 70.3 17.0 213 30-258 6-232 (304)
69 2fep_A Catabolite control prot 98.0 0.00022 7.4E-09 68.2 18.2 206 30-253 14-225 (289)
70 3c3k_A Alanine racemase; struc 98.0 0.00039 1.3E-08 66.2 19.9 204 31-256 7-217 (285)
71 1tjy_A Sugar transport protein 98.0 0.00045 1.5E-08 66.9 20.6 205 34-257 5-221 (316)
72 2fvy_A D-galactose-binding per 98.0 0.00048 1.6E-08 66.3 20.5 204 33-246 3-226 (309)
73 3o1i_D Periplasmic protein TOR 98.0 0.00016 5.6E-09 69.5 17.0 205 31-248 4-218 (304)
74 3l49_A ABC sugar (ribose) tran 98.0 0.00027 9.2E-09 67.5 18.2 200 31-248 4-216 (291)
75 3mpk_A Virulence sensor protei 98.0 4.5E-06 1.5E-10 79.0 5.4 84 469-571 31-118 (267)
76 3o74_A Fructose transport syst 98.0 0.00027 9.3E-09 66.7 17.7 205 33-257 3-214 (272)
77 3g1w_A Sugar ABC transporter; 98.0 0.0014 4.7E-08 63.0 22.9 210 33-258 5-221 (305)
78 2fn9_A Ribose ABC transporter, 98.0 0.00049 1.7E-08 65.6 19.4 197 33-247 3-215 (290)
79 2x7x_A Sensor protein; transfe 98.0 0.00075 2.6E-08 65.6 21.0 209 31-257 5-221 (325)
80 3dbi_A Sugar-binding transcrip 98.0 0.00017 5.8E-09 70.7 16.4 208 31-255 60-274 (338)
81 3del_B Arginine binding protei 98.0 2.8E-06 9.5E-11 79.0 3.2 81 469-569 10-94 (242)
82 2vk2_A YTFQ, ABC transporter p 97.9 0.00047 1.6E-08 66.4 18.7 207 32-253 2-221 (306)
83 3d8u_A PURR transcriptional re 97.9 0.00061 2.1E-08 64.4 19.2 206 32-256 3-214 (275)
84 3l6u_A ABC-type sugar transpor 97.9 0.00058 2E-08 65.2 19.0 201 30-248 6-220 (293)
85 2iks_A DNA-binding transcripti 97.9 0.00056 1.9E-08 65.4 18.8 207 30-255 18-229 (293)
86 3lft_A Uncharacterized protein 97.9 0.0011 3.9E-08 63.3 20.9 200 32-247 2-210 (295)
87 1wdn_A GLNBP, glutamine bindin 97.9 5.7E-06 2E-10 75.7 4.4 80 470-569 3-86 (226)
88 1ii5_A SLR1257 protein; membra 97.9 7.4E-06 2.5E-10 75.4 5.1 76 470-563 4-80 (233)
89 2pyy_A Ionotropic glutamate re 97.9 4E-06 1.4E-10 76.9 3.3 81 470-570 3-87 (228)
90 2o20_A Catabolite control prot 97.9 0.00032 1.1E-08 68.5 17.2 208 31-256 62-272 (332)
91 2ioy_A Periplasmic sugar-bindi 97.9 0.0022 7.5E-08 60.8 22.5 203 34-256 3-214 (283)
92 3h75_A Periplasmic sugar-bindi 97.9 0.0033 1.1E-07 61.7 24.2 213 32-255 3-237 (350)
93 3lkv_A Uncharacterized conserv 97.9 0.0006 2.1E-08 65.5 18.3 205 28-246 4-220 (302)
94 3k4h_A Putative transcriptiona 97.9 0.00051 1.8E-08 65.5 17.6 209 30-255 6-224 (292)
95 1jx6_A LUXP protein; protein-l 97.9 0.00071 2.4E-08 66.3 18.7 207 29-247 40-258 (342)
96 1qpz_A PURA, protein (purine n 97.9 0.001 3.6E-08 65.0 19.9 208 31-255 57-270 (340)
97 2rgy_A Transcriptional regulat 97.9 0.00028 9.7E-09 67.4 15.3 205 31-253 7-219 (290)
98 2y7i_A STM4351; arginine-bindi 97.9 8E-06 2.7E-10 75.0 4.1 84 469-571 5-92 (229)
99 3m9w_A D-xylose-binding peripl 97.8 0.001 3.5E-08 64.2 19.3 199 33-248 3-213 (313)
100 3bbl_A Regulatory protein of L 97.8 0.00039 1.3E-08 66.3 15.9 203 32-252 4-217 (287)
101 2h0a_A TTHA0807, transcription 97.8 0.00024 8.1E-09 67.3 14.2 203 34-256 1-213 (276)
102 3jy6_A Transcriptional regulat 97.8 0.0022 7.5E-08 60.5 20.7 206 30-257 5-215 (276)
103 3egc_A Putative ribose operon 97.8 0.00024 8.2E-09 67.9 13.8 208 30-255 6-218 (291)
104 2q88_A EHUB, putative ABC tran 97.8 1.1E-05 3.6E-10 75.8 3.9 82 470-570 13-98 (257)
105 3gv0_A Transcriptional regulat 97.8 0.0022 7.5E-08 61.0 20.3 210 30-255 6-220 (288)
106 8abp_A L-arabinose-binding pro 97.8 0.0015 5.2E-08 62.7 19.2 205 32-249 2-223 (306)
107 3clk_A Transcription regulator 97.8 0.0005 1.7E-08 65.6 15.5 205 31-253 7-215 (290)
108 3hcw_A Maltose operon transcri 97.7 0.0027 9.1E-08 60.7 19.8 212 30-256 5-225 (295)
109 3h7m_A Sensor protein; histidi 97.7 2.6E-05 9E-10 71.7 5.2 82 469-570 10-95 (234)
110 3k9c_A Transcriptional regulat 97.7 0.0024 8.3E-08 60.8 19.2 206 30-256 10-218 (289)
111 2hsg_A Glucose-resistance amyl 97.7 0.00044 1.5E-08 67.5 14.3 204 30-251 58-267 (332)
112 3gyb_A Transcriptional regulat 97.7 0.00022 7.4E-09 67.7 11.1 202 31-255 4-208 (280)
113 3g85_A Transcriptional regulat 97.7 0.00082 2.8E-08 64.0 15.2 207 29-255 8-220 (289)
114 3tb6_A Arabinose metabolism tr 97.6 0.001 3.6E-08 63.5 15.1 207 33-256 16-234 (298)
115 2pvu_A ARTJ; basic amino acid 97.6 2.7E-05 9.2E-10 73.8 3.6 81 469-569 41-125 (272)
116 3kjx_A Transcriptional regulat 97.6 0.0018 6.2E-08 63.4 16.9 209 30-256 66-280 (344)
117 3kke_A LACI family transcripti 97.6 0.0014 4.9E-08 62.9 15.8 203 30-252 13-226 (303)
118 3ctp_A Periplasmic binding pro 97.6 0.00067 2.3E-08 66.1 13.5 203 30-256 58-264 (330)
119 2vha_A Periplasmic binding tra 97.6 3.7E-05 1.3E-09 73.4 3.8 82 470-570 17-109 (287)
120 3qk7_A Transcriptional regulat 97.6 0.0021 7.2E-08 61.4 16.2 206 31-255 5-219 (294)
121 3e3m_A Transcriptional regulat 97.5 0.0094 3.2E-07 58.5 20.8 208 31-256 69-283 (355)
122 3bil_A Probable LACI-family tr 97.5 0.0044 1.5E-07 60.8 18.3 206 31-255 65-273 (348)
123 3e61_A Putative transcriptiona 97.5 0.0012 4E-08 62.5 13.4 202 31-257 7-211 (277)
124 3cs3_A Sugar-binding transcrip 97.4 0.01 3.5E-07 55.9 19.3 200 30-257 6-211 (277)
125 3hs3_A Ribose operon repressor 97.4 0.0021 7.1E-08 60.8 14.3 198 30-256 8-211 (277)
126 4i62_A Amino acid ABC transpor 97.4 5E-05 1.7E-09 71.5 2.8 83 470-570 39-127 (269)
127 3h5o_A Transcriptional regulat 97.4 0.0038 1.3E-07 61.0 16.4 206 31-256 61-272 (339)
128 2dri_A D-ribose-binding protei 97.4 0.024 8.1E-07 53.1 21.1 203 34-256 3-213 (271)
129 1xt8_A Putative amino-acid tra 97.4 7.2E-05 2.5E-09 71.6 3.4 82 470-570 44-132 (292)
130 3qax_A Probable ABC transporte 97.4 6.4E-05 2.2E-09 70.7 2.9 81 469-569 30-114 (268)
131 3huu_A Transcription regulator 97.3 0.0054 1.8E-07 58.8 16.2 202 30-253 20-232 (305)
132 1byk_A Protein (trehalose oper 97.3 0.017 5.8E-07 53.5 19.2 197 34-257 4-204 (255)
133 3uug_A Multiple sugar-binding 97.3 0.0051 1.8E-07 59.7 15.9 205 32-251 3-232 (330)
134 2v25_A Major cell-binding fact 97.3 9.4E-05 3.2E-09 69.1 2.8 76 470-563 38-116 (259)
135 2yln_A Putative ABC transporte 97.3 9.3E-05 3.2E-09 70.5 2.6 81 470-569 57-142 (283)
136 3jvd_A Transcriptional regulat 97.3 0.014 4.8E-07 56.7 18.4 197 31-255 63-263 (333)
137 1gud_A ALBP, D-allose-binding 97.2 0.065 2.2E-06 50.6 22.3 210 34-258 3-227 (288)
138 2fqx_A Membrane lipoprotein TM 97.2 0.043 1.5E-06 52.8 21.1 207 31-257 3-221 (318)
139 4fe7_A Xylose operon regulator 97.2 0.018 6.2E-07 57.8 19.0 209 28-256 21-236 (412)
140 2hqb_A Transcriptional activat 97.2 0.069 2.4E-06 50.7 21.7 195 31-246 4-204 (296)
141 2yjp_A Putative ABC transporte 97.1 0.00016 5.6E-09 69.1 2.5 75 470-563 55-132 (291)
142 1jye_A Lactose operon represso 97.1 0.046 1.6E-06 53.4 19.7 204 31-256 60-271 (349)
143 3miz_A Putative transcriptiona 97.0 0.0012 3.9E-08 63.4 7.8 208 30-255 11-229 (301)
144 3s99_A Basic membrane lipoprot 97.0 0.059 2E-06 52.6 19.9 202 27-247 21-230 (356)
145 3h5t_A Transcriptional regulat 96.5 0.078 2.7E-06 52.1 16.7 211 30-255 66-300 (366)
146 3qi7_A Putative transcriptiona 96.2 0.32 1.1E-05 47.1 18.2 251 30-301 10-286 (371)
147 3ixl_A Amdase, arylmalonate de 95.7 0.19 6.5E-06 45.9 13.8 125 88-240 57-198 (240)
148 2ozz_A Hypothetical protein YH 94.9 0.0046 1.6E-07 55.8 -0.0 61 492-570 27-93 (231)
149 2xed_A Putative maleate isomer 92.3 2.9 9.9E-05 38.8 14.1 78 154-234 135-220 (273)
150 2l82_A Designed protein OR32; 89.3 5.3 0.00018 30.1 10.1 96 143-247 5-104 (162)
151 2fqx_A Membrane lipoprotein TM 88.7 9.3 0.00032 36.2 14.7 126 34-166 131-264 (318)
152 3bfj_A 1,3-propanediol oxidore 85.4 3 0.0001 41.0 9.2 100 140-242 11-114 (387)
153 3s99_A Basic membrane lipoprot 85.2 9.9 0.00034 36.7 12.6 88 34-130 151-238 (356)
154 3ox4_A Alcohol dehydrogenase 2 84.7 2.2 7.7E-05 41.8 7.8 90 154-243 20-111 (383)
155 2dgd_A 223AA long hypothetical 83.8 11 0.00039 33.4 11.7 79 153-234 96-183 (223)
156 2eq5_A 228AA long hypothetical 83.0 8 0.00027 34.5 10.3 113 90-234 68-186 (228)
157 3n5l_A Binding protein compone 81.7 0.96 3.3E-05 43.0 3.8 38 500-545 24-61 (310)
158 2hqb_A Transcriptional activat 81.2 21 0.00072 33.2 13.0 120 34-167 128-248 (296)
159 1rrm_A Lactaldehyde reductase; 77.5 3.2 0.00011 40.7 6.1 101 140-243 9-111 (386)
160 1vlj_A NADH-dependent butanol 77.2 6.3 0.00022 38.9 8.2 87 155-241 33-122 (407)
161 1o2d_A Alcohol dehydrogenase, 76.4 15 0.00052 35.6 10.5 98 140-241 19-119 (371)
162 1jfl_A Aspartate racemase; alp 75.7 13 0.00043 33.3 9.1 39 88-127 65-103 (228)
163 3uhj_A Probable glycerol dehyd 73.5 4.5 0.00015 39.6 5.9 74 155-232 43-116 (387)
164 2pju_A Propionate catabolism o 70.2 58 0.002 28.8 12.1 134 73-248 40-174 (225)
165 3p7i_A PHND, subunit of alkylp 70.2 3.3 0.00011 39.5 4.0 38 500-545 34-71 (321)
166 2q5c_A NTRC family transcripti 70.0 54 0.0018 28.3 20.5 159 32-248 4-162 (196)
167 2fp4_A Succinyl-COA ligase [GD 69.0 75 0.0026 29.6 14.0 144 82-244 80-234 (305)
168 4a8p_A Putrescine carbamoyltra 68.5 84 0.0029 30.0 13.8 131 33-199 42-183 (355)
169 4a8t_A Putrescine carbamoyltra 67.3 80 0.0027 29.9 12.7 129 33-199 64-205 (339)
170 3ce9_A Glycerol dehydrogenase; 67.1 15 0.00051 35.4 8.0 95 140-240 12-108 (354)
171 2l69_A Rossmann 2X3 fold prote 66.3 35 0.0012 24.8 10.6 68 142-218 53-120 (134)
172 3tpf_A Otcase, ornithine carba 65.4 86 0.0029 29.3 12.4 128 34-199 38-176 (307)
173 3gd5_A Otcase, ornithine carba 64.8 94 0.0032 29.2 12.8 130 34-199 50-187 (323)
174 2gzm_A Glutamate racemase; enz 64.2 27 0.00093 32.0 8.8 38 90-127 58-95 (267)
175 2zsk_A PH1733, 226AA long hypo 63.1 27 0.00094 30.9 8.5 75 93-196 69-143 (226)
176 3dmy_A Protein FDRA; predicted 62.6 1.2E+02 0.0041 30.4 13.6 142 82-245 45-197 (480)
177 3m9w_A D-xylose-binding peripl 62.4 27 0.00092 32.5 8.8 79 166-247 3-84 (313)
178 4ep1_A Otcase, ornithine carba 62.4 76 0.0026 30.1 11.5 128 34-199 72-209 (340)
179 2oho_A Glutamate racemase; iso 61.3 36 0.0012 31.2 9.1 37 91-127 68-104 (273)
180 3r7f_A Aspartate carbamoyltran 61.0 33 0.0011 32.0 8.7 133 34-199 38-179 (304)
181 4gd5_A Phosphate ABC transport 60.8 13 0.00044 34.3 6.1 39 27-76 33-71 (279)
182 1jq5_A Glycerol dehydrogenase; 60.0 16 0.00053 35.5 6.7 95 140-240 10-106 (370)
183 2dwu_A Glutamate racemase; iso 58.4 61 0.0021 29.8 10.1 38 89-126 61-98 (276)
184 1mkz_A Molybdenum cofactor bio 57.0 53 0.0018 27.6 8.8 64 166-231 11-78 (172)
185 3ist_A Glutamate racemase; str 56.6 35 0.0012 31.3 8.0 38 90-127 60-97 (269)
186 3jy6_A Transcriptional regulat 55.6 33 0.0011 31.2 8.0 78 165-247 7-86 (276)
187 3l49_A ABC sugar (ribose) tran 54.9 35 0.0012 31.2 8.0 79 166-247 6-87 (291)
188 4dik_A Flavoprotein; TM0755, e 53.5 93 0.0032 30.5 11.1 92 166-262 266-365 (410)
189 1dxh_A Ornithine carbamoyltran 53.5 1.4E+02 0.0046 28.3 11.6 130 33-199 46-186 (335)
190 3dbi_A Sugar-binding transcrip 53.4 40 0.0014 31.8 8.3 84 161-247 57-144 (338)
191 3k9c_A Transcriptional regulat 53.3 1.3E+02 0.0045 27.2 12.0 117 34-161 128-252 (289)
192 3g1w_A Sugar ABC transporter; 52.8 28 0.00096 32.2 7.0 80 166-247 5-87 (305)
193 3tb6_A Arabinose metabolism tr 51.9 48 0.0016 30.3 8.5 79 166-247 16-100 (298)
194 2jfq_A Glutamate racemase; cel 51.4 1.1E+02 0.0038 28.2 10.7 38 90-127 77-114 (286)
195 2vvt_A Glutamate racemase; iso 51.2 89 0.0031 28.9 10.0 39 89-127 78-116 (290)
196 3jzd_A Iron-containing alcohol 51.0 23 0.00079 34.1 6.1 75 154-232 25-99 (358)
197 3hl0_A Maleylacetate reductase 50.8 33 0.0011 32.9 7.2 86 140-232 12-97 (353)
198 3qvl_A Putative hydantoin race 50.5 1.4E+02 0.0048 26.7 11.1 85 33-127 2-97 (245)
199 3l6u_A ABC-type sugar transpor 50.5 40 0.0014 30.8 7.7 80 165-247 8-90 (293)
200 8abp_A L-arabinose-binding pro 50.1 46 0.0016 30.6 8.1 78 166-247 3-83 (306)
201 1duv_G Octase-1, ornithine tra 50.0 1.7E+02 0.0058 27.6 13.2 132 33-199 45-186 (333)
202 2fvy_A D-galactose-binding per 49.9 75 0.0026 29.1 9.6 124 30-161 138-270 (309)
203 3uug_A Multiple sugar-binding 49.9 41 0.0014 31.4 7.8 79 166-247 4-85 (330)
204 2ef0_A Ornithine carbamoyltran 48.7 1.5E+02 0.005 27.6 10.9 131 33-199 46-184 (301)
205 3gbv_A Putative LACI-family tr 48.7 50 0.0017 30.3 8.1 84 164-247 7-95 (304)
206 3sds_A Ornithine carbamoyltran 48.5 1.8E+02 0.0061 27.7 11.6 131 33-199 67-218 (353)
207 1js1_X Transcarbamylase; alpha 48.4 1.5E+02 0.0051 27.9 10.9 135 33-199 37-202 (324)
208 1b73_A Glutamate racemase; iso 48.1 78 0.0027 28.5 9.0 117 88-232 53-180 (254)
209 3h75_A Periplasmic sugar-bindi 48.0 42 0.0014 31.8 7.5 79 166-247 4-87 (350)
210 3o74_A Fructose transport syst 47.4 22 0.00074 32.2 5.2 79 166-247 3-83 (272)
211 2csu_A 457AA long hypothetical 47.0 65 0.0022 32.1 8.9 144 82-246 73-227 (457)
212 3grf_A Ornithine carbamoyltran 46.6 1.9E+02 0.0065 27.2 13.8 131 33-199 45-192 (328)
213 1vlv_A Otcase, ornithine carba 46.5 1.9E+02 0.0065 27.1 12.6 132 33-199 59-198 (325)
214 3guv_A Site-specific recombina 44.9 1.3E+02 0.0044 24.8 9.3 38 209-246 60-105 (167)
215 1oth_A Protein (ornithine tran 44.6 2E+02 0.0069 26.9 11.7 129 33-199 47-185 (321)
216 3h5o_A Transcriptional regulat 44.6 71 0.0024 30.0 8.6 81 163-247 60-142 (339)
217 4amu_A Ornithine carbamoyltran 44.5 1.2E+02 0.0042 29.0 9.8 130 33-199 72-211 (365)
218 4h31_A Otcase, ornithine carba 44.5 2E+02 0.0067 27.5 11.4 129 34-199 72-212 (358)
219 3sr0_A Adenylate kinase; phosp 44.1 11 0.00037 33.1 2.3 30 98-127 2-31 (206)
220 1zuw_A Glutamate racemase 1; ( 43.8 1.4E+02 0.0049 27.1 10.1 41 87-127 55-96 (272)
221 3gyb_A Transcriptional regulat 43.5 67 0.0023 29.0 8.0 116 34-161 120-243 (280)
222 3p6l_A Sugar phosphate isomera 43.4 1.1E+02 0.0039 27.3 9.5 93 154-247 25-129 (262)
223 1pvv_A Otcase, ornithine carba 43.1 2.1E+02 0.0073 26.7 14.2 131 33-199 47-185 (315)
224 1ta9_A Glycerol dehydrogenase; 41.5 41 0.0014 33.5 6.4 83 155-240 81-165 (450)
225 3lmz_A Putative sugar isomeras 41.1 93 0.0032 27.8 8.5 93 154-247 33-127 (257)
226 3tsm_A IGPS, indole-3-glycerol 41.1 2.1E+02 0.0071 26.1 10.5 87 154-248 82-171 (272)
227 4edp_A ABC transporter, substr 40.6 13 0.00045 35.2 2.6 64 1-76 4-69 (351)
228 2jfn_A Glutamate racemase; cel 40.6 1.3E+02 0.0043 27.7 9.2 35 93-127 79-114 (285)
229 2fn9_A Ribose ABC transporter, 40.4 63 0.0022 29.4 7.3 79 166-247 3-84 (290)
230 1nrz_A PTS system, sorbose-spe 40.0 74 0.0025 26.5 6.7 80 152-239 14-93 (164)
231 3rot_A ABC sugar transporter, 39.9 1.9E+02 0.0067 26.1 10.7 117 33-160 131-258 (297)
232 1oj7_A Hypothetical oxidoreduc 39.3 34 0.0012 33.6 5.4 82 156-241 43-127 (408)
233 3umf_A Adenylate kinase; rossm 39.2 13 0.00044 33.0 2.0 31 97-127 30-60 (217)
234 2qh8_A Uncharacterized protein 39.1 1.4E+02 0.0048 27.3 9.6 111 34-161 142-255 (302)
235 2w37_A Ornithine carbamoyltran 38.9 2.6E+02 0.009 26.6 11.2 130 33-199 68-207 (359)
236 3zy2_A Putative GDP-fucose pro 38.9 1.2E+02 0.004 28.8 8.5 88 146-246 261-348 (362)
237 2pjk_A 178AA long hypothetical 38.3 1.8E+02 0.0061 24.5 9.2 66 163-230 13-89 (178)
238 3kke_A LACI family transcripti 38.1 65 0.0022 29.6 7.0 80 164-247 14-95 (303)
239 1zq6_A Otcase, ornithine carba 37.8 2.3E+02 0.0079 27.0 10.6 135 33-199 59-226 (359)
240 3lft_A Uncharacterized protein 37.7 2E+02 0.007 26.0 10.4 111 33-160 134-247 (295)
241 3kjx_A Transcriptional regulat 37.3 1.2E+02 0.004 28.5 8.8 78 166-247 69-148 (344)
242 1vsq_C Mannose-specific phosph 37.3 68 0.0023 26.8 6.1 81 152-240 17-97 (165)
243 3ksm_A ABC-type sugar transpor 37.3 53 0.0018 29.6 6.2 80 167-247 2-85 (276)
244 3d02_A Putative LACI-type tran 37.0 86 0.0029 28.6 7.7 80 166-247 5-87 (303)
245 2i6u_A Otcase, ornithine carba 36.6 2.6E+02 0.009 25.9 12.7 132 33-199 40-179 (307)
246 1i4n_A Indole-3-glycerol phosp 35.9 1.5E+02 0.005 26.7 8.5 85 155-248 65-152 (251)
247 2nu8_A Succinyl-COA ligase [AD 35.7 2.6E+02 0.0089 25.6 12.5 141 82-241 73-223 (288)
248 3i42_A Response regulator rece 35.6 1.3E+02 0.0044 22.7 7.6 56 181-245 15-72 (127)
249 1y5e_A Molybdenum cofactor bio 35.6 1.9E+02 0.0065 24.0 8.9 67 163-231 11-81 (169)
250 2l69_A Rossmann 2X3 fold prote 35.1 1.3E+02 0.0044 21.9 8.2 100 139-246 25-125 (134)
251 3e3m_A Transcriptional regulat 34.9 91 0.0031 29.5 7.7 80 164-247 69-150 (355)
252 3k4h_A Putative transcriptiona 34.7 69 0.0024 29.1 6.6 80 164-247 7-93 (292)
253 2fep_A Catabolite control prot 34.6 84 0.0029 28.6 7.1 78 166-247 17-96 (289)
254 1ccw_A Protein (glutamate muta 34.4 1.7E+02 0.0059 23.2 10.3 85 167-258 5-93 (137)
255 3rfq_A Pterin-4-alpha-carbinol 34.4 98 0.0033 26.4 6.8 63 166-230 31-97 (185)
256 3brq_A HTH-type transcriptiona 34.1 1.4E+02 0.0047 27.0 8.6 80 164-247 18-102 (296)
257 2ioy_A Periplasmic sugar-bindi 33.9 83 0.0028 28.5 6.9 78 167-247 3-83 (283)
258 1tjy_A Sugar transport protein 33.6 50 0.0017 30.8 5.4 80 166-247 4-86 (316)
259 1jx6_A LUXP protein; protein-l 33.6 97 0.0033 29.0 7.6 81 166-246 44-128 (342)
260 3e61_A Putative transcriptiona 33.5 72 0.0025 28.7 6.4 76 166-247 9-87 (277)
261 2is8_A Molybdopterin biosynthe 32.8 1.3E+02 0.0044 24.9 7.3 63 167-231 3-71 (164)
262 2dri_A D-ribose-binding protei 31.7 1E+02 0.0036 27.5 7.2 79 166-247 2-83 (271)
263 3egc_A Putative ribose operon 31.5 50 0.0017 30.1 5.0 79 165-247 8-88 (291)
264 1oi7_A Succinyl-COA synthetase 31.5 3.1E+02 0.01 25.1 12.8 133 81-232 72-209 (288)
265 2yxb_A Coenzyme B12-dependent 31.4 2.2E+02 0.0075 23.4 11.3 85 166-257 19-107 (161)
266 3cs3_A Sugar-binding transcrip 31.3 2.5E+02 0.0085 25.0 9.8 114 34-160 120-243 (277)
267 3lte_A Response regulator; str 31.2 1.3E+02 0.0046 22.8 7.0 57 181-246 18-76 (132)
268 4f2g_A Otcase 1, ornithine car 30.7 1.6E+02 0.0055 27.4 8.1 128 34-199 47-184 (309)
269 3huu_A Transcription regulator 30.3 53 0.0018 30.3 4.9 84 160-247 17-107 (305)
270 3out_A Glutamate racemase; str 30.3 1.6E+02 0.0055 26.8 8.0 38 89-126 61-99 (268)
271 2x7x_A Sensor protein; transfe 29.8 1.6E+02 0.0055 27.2 8.3 80 165-247 6-88 (325)
272 3lkv_A Uncharacterized conserv 29.7 2.1E+02 0.007 26.3 9.0 65 91-160 187-254 (302)
273 3lfj_A Manxb, phosphotransfera 29.3 74 0.0025 27.2 5.0 81 152-240 35-115 (187)
274 1p99_A Hypothetical protein PG 29.2 56 0.0019 30.4 4.8 45 30-87 38-82 (295)
275 3csu_A Protein (aspartate carb 29.0 3.5E+02 0.012 25.1 10.5 133 34-199 43-187 (310)
276 2rjo_A Twin-arginine transloca 28.9 93 0.0032 29.0 6.5 79 166-247 6-89 (332)
277 3eye_A PTS system N-acetylgala 28.9 89 0.003 26.2 5.4 80 152-240 19-99 (168)
278 1ou0_A Precorrin-8X methylmuta 28.8 64 0.0022 28.0 4.6 69 48-129 115-187 (207)
279 3rf7_A Iron-containing alcohol 28.7 1.1E+02 0.0037 29.6 6.8 93 140-239 28-128 (375)
280 1jye_A Lactose operon represso 28.6 1.4E+02 0.0048 28.0 7.8 65 164-230 60-126 (349)
281 2iks_A DNA-binding transcripti 28.4 61 0.0021 29.6 5.0 80 164-246 19-100 (293)
282 3g85_A Transcriptional regulat 28.4 1.7E+02 0.0057 26.3 8.1 120 34-161 129-257 (289)
283 1ble_A Fructose permease; phos 28.3 71 0.0024 26.6 4.7 80 152-239 15-94 (163)
284 2h3h_A Sugar ABC transporter, 28.3 1.1E+02 0.0037 28.2 6.8 79 167-247 3-83 (313)
285 2lnd_A De novo designed protei 28.1 1.5E+02 0.005 20.9 5.4 41 207-247 36-78 (112)
286 3bvp_A INT, TP901-1 integrase; 28.0 1.4E+02 0.0048 23.7 6.5 23 150-172 24-46 (138)
287 4es6_A Uroporphyrinogen-III sy 27.5 45 0.0016 30.0 3.8 84 152-244 115-206 (254)
288 2yv1_A Succinyl-COA ligase [AD 27.2 3.7E+02 0.013 24.7 12.1 133 81-232 78-215 (294)
289 3pzy_A MOG; ssgcid, seattle st 26.9 1.4E+02 0.0046 24.8 6.3 62 166-230 8-74 (164)
290 1j3m_A The conserved hypotheti 26.8 2.1E+02 0.0073 22.3 7.3 69 178-255 12-82 (129)
291 2jz2_A SSL0352 protein; SH3-li 26.6 8.9 0.0003 25.7 -0.9 18 517-534 23-45 (66)
292 3iv7_A Alcohol dehydrogenase I 26.6 40 0.0014 32.5 3.3 73 154-232 26-98 (364)
293 3gv0_A Transcriptional regulat 26.4 1.1E+02 0.0036 27.8 6.3 80 164-247 7-90 (288)
294 3hcw_A Maltose operon transcri 26.1 3.6E+02 0.012 24.2 11.9 115 34-161 133-259 (295)
295 3miz_A Putative transcriptiona 25.7 2.4E+02 0.0082 25.5 8.7 69 160-231 8-79 (301)
296 2g2c_A Putative molybdenum cof 25.7 2E+02 0.0068 23.8 7.2 63 167-231 7-78 (167)
297 3ojc_A Putative aspartate/glut 25.5 55 0.0019 29.1 3.8 76 92-196 71-147 (231)
298 1q9u_A Uncharacterized protein 25.0 2.5E+02 0.0084 21.9 8.0 69 178-255 15-85 (130)
299 3iwt_A 178AA long hypothetical 25.0 2.8E+02 0.0095 23.1 8.1 49 181-231 41-90 (178)
300 1y80_A Predicted cobalamin bin 25.0 3.3E+02 0.011 23.3 10.2 85 166-256 89-177 (210)
301 1f2v_A COBH, precorrin-8X meth 24.6 84 0.0029 27.5 4.6 65 49-129 126-199 (219)
302 2rb4_A ATP-dependent RNA helic 24.5 2.9E+02 0.01 22.6 8.4 76 145-227 14-89 (175)
303 3d8u_A PURR transcriptional re 24.3 1E+02 0.0035 27.6 5.7 78 166-247 4-83 (275)
304 2yv2_A Succinyl-COA synthetase 24.2 4.2E+02 0.014 24.3 12.6 132 82-232 80-216 (297)
305 3dnf_A ISPH, LYTB, 4-hydroxy-3 24.1 1.4E+02 0.0049 27.5 6.3 52 74-125 186-239 (297)
306 2o20_A Catabolite control prot 24.0 1.4E+02 0.0049 27.7 6.8 80 164-247 62-143 (332)
307 2vk2_A YTFQ, ABC transporter p 23.8 1.1E+02 0.0037 28.1 5.9 79 166-247 3-84 (306)
308 1ml4_A Aspartate transcarbamoy 23.5 4.5E+02 0.015 24.4 13.1 133 34-199 46-187 (308)
309 2zzv_A ABC transporter, solute 23.4 1.1E+02 0.0037 29.2 5.8 44 29-80 32-75 (361)
310 3hs3_A Ribose operon repressor 23.3 1.4E+02 0.0046 26.9 6.3 67 161-230 6-75 (277)
311 2bon_A Lipid kinase; DAG kinas 23.3 2.7E+02 0.0092 26.1 8.5 75 166-245 30-105 (332)
312 1pg5_A Aspartate carbamoyltran 23.3 2.9E+02 0.0098 25.6 8.3 131 34-199 40-182 (299)
313 2h0a_A TTHA0807, transcription 23.3 3.8E+02 0.013 23.5 9.5 115 34-160 116-244 (276)
314 3c3k_A Alanine racemase; struc 23.0 2.4E+02 0.0083 25.2 8.1 77 166-247 9-87 (285)
315 3p3v_A PTS system, N-acetylgal 22.8 99 0.0034 25.7 4.6 79 152-240 18-96 (163)
316 3bil_A Probable LACI-family tr 22.7 1.4E+02 0.0047 28.1 6.4 78 166-247 67-146 (348)
317 3clk_A Transcription regulator 22.7 93 0.0032 28.3 5.1 78 166-246 9-88 (290)
318 2rgy_A Transcriptional regulat 22.6 1.1E+02 0.0036 27.9 5.5 78 166-247 9-91 (290)
319 3ezx_A MMCP 1, monomethylamine 22.5 3.8E+02 0.013 23.2 10.2 86 166-257 93-184 (215)
320 2hsg_A Glucose-resistance amyl 21.9 1.6E+02 0.0056 27.2 6.8 77 166-246 61-139 (332)
321 4a29_A Engineered retro-aldol 21.9 4.4E+02 0.015 23.7 9.2 85 156-249 69-156 (258)
322 3kbq_A Protein TA0487; structu 21.8 2.2E+02 0.0074 23.9 6.6 46 181-229 24-69 (172)
323 3jvd_A Transcriptional regulat 21.7 4.7E+02 0.016 24.0 13.3 114 34-161 176-298 (333)
324 3e7d_A COBH, precorrin-8X meth 21.6 1E+02 0.0036 26.8 4.6 49 81-129 138-192 (212)
325 3uor_A ABC transporter sugar b 21.2 1.3E+02 0.0043 29.8 6.0 26 49-77 40-65 (458)
326 1gud_A ALBP, D-allose-binding 21.1 1.5E+02 0.0053 26.7 6.2 80 167-247 3-85 (288)
327 3g13_A Putative conjugative tr 21.1 2.3E+02 0.0079 23.3 6.8 39 208-246 61-105 (169)
328 3eul_A Possible nitrate/nitrit 21.0 2.8E+02 0.0094 21.7 7.2 59 181-246 27-87 (152)
329 1y81_A Conserved hypothetical 20.9 1.1E+02 0.0037 24.5 4.4 34 222-258 69-102 (138)
330 3bbl_A Regulatory protein of L 20.9 1.2E+02 0.0041 27.4 5.4 78 166-247 5-88 (287)
331 3qk7_A Transcriptional regulat 20.5 1.4E+02 0.0048 27.1 5.8 77 166-247 7-89 (294)
332 3d6n_B Aspartate carbamoyltran 20.4 2E+02 0.0068 26.5 6.6 132 34-199 37-178 (291)
333 3rjz_A N-type ATP pyrophosphat 20.4 3.6E+02 0.012 23.9 8.0 94 112-230 54-147 (237)
334 4dz1_A DALS D-alanine transpor 20.1 41 0.0014 30.1 1.9 52 165-230 137-192 (259)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=1.7e-61 Score=540.74 Aligned_cols=471 Identities=17% Similarity=0.246 Sum_probs=394.7
Q ss_pred CeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-CHHHHHHHHHHhHhcCcEEEEcCCChHH
Q 008205 31 PVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNY-SRFLGMVEALTLLENETVAIIGPQFSVI 109 (574)
Q Consensus 31 ~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~-~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 109 (574)
++|+||+++|++.. ....|+++|+|+||+++ ++|+++++|+++ ++..+.+++|++++++|.|||||.+|..
T Consensus 1 ~~ikIG~l~~~tg~---~~~~a~~lAveeiN~~~-----~~l~~~~~D~~~~~~~~a~~~~~~l~~~~V~aiiG~~~S~~ 72 (823)
T 3kg2_A 1 NSIQIGGLFPRGAD---QEYSAFRVGMVQFSTSE-----FRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS 72 (823)
T ss_dssp CEEEEEEEEETTCH---HHHHHHHHHHHHTCCSS-----CEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred CcceEEEEeCCCCh---HHHHHHHHHHHHHhcCC-----eEEEEEEEEcCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Confidence 36999999999753 78999999999999987 799999999999 9999999999999999999999999999
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKL 189 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~ 189 (574)
+.+++++++.++||+|++. .+.. ..++|+||+.|+ ++.++++++++|||++|++|| |+++|...++.+++.+
T Consensus 73 ~~a~~~i~~~~~iP~is~~--~~~~--~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~-d~~~g~~~~~~~~~~~ 144 (823)
T 3kg2_A 73 VNTITSFCGTLHVSFITPS--FPTD--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144 (823)
T ss_dssp HHHHHHHHHHTTCEEEECS--CCCS--SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE-CGGGCTHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCceeecc--cCCC--CCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEE-eCChhHHHHHHHHHHh
Confidence 9999999999999999973 3322 357899999998 789999999999999999999 7778999999999999
Q ss_pred hhcCcEEEEEeecCCC--CChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCC
Q 008205 190 AEKRCRLSHKVPLSPK--GSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTD 267 (574)
Q Consensus 190 ~~~g~~v~~~~~~~~~--~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~ 267 (574)
++.|+||.....++.. .+..++..++++|+++++++|++++....+..++++|+++||..++|+||+++.+....+.
T Consensus 145 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~- 223 (823)
T 3kg2_A 145 AEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL- 223 (823)
T ss_dssp HHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTTTBTTCEEEECSSBSSSSCC-
T ss_pred hccCCceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcCCCCeEEEEecccccccch-
Confidence 9999999988766643 2367899999999999999999999999999999999999999999999999864433322
Q ss_pred CcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhcc-CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 008205 268 SQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRR-NTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISF 346 (574)
Q Consensus 268 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~ 346 (574)
........|++++.+..++.+.+++|.++|++.++. ++......++.+++++||||+++|+|++++.+++.++..
T Consensus 224 ----~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~la~Al~~~~~~~~~~~~ 299 (823)
T 3kg2_A 224 ----LKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISR 299 (823)
T ss_dssp ----SSSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred ----HHhhcCCCCceEeeeecCCchHHHHHHHHHHhhcccccCCCCccccchhhHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 223345667899998888899999999999887653 333333456788999999999999999999876544321
Q ss_pred cCCcccccccCCCcccccc--cccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeecCeEEEEEEeeCCCC
Q 008205 347 SEDSKLSELSRGDMRFSSV--SIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSG 424 (574)
Q Consensus 347 ~~~~~~~~~~~~~~~c~~~--~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~~~~~~VG~w~~~~g 424 (574)
. .....|... ..|.+|..|+++|++++|+|++|+++||++|+|.+..|+|++++++++++||.|++..|
T Consensus 300 ~---------~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~~~vg~w~~~~g 370 (823)
T 3kg2_A 300 R---------GNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDK 370 (823)
T ss_dssp S---------SCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCEEEEEEEETTTE
T ss_pred C---------CCCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEcCCCCeeEEEEcCCCC
Confidence 1 123456554 56778999999999999999999999999999999999999999999999999999887
Q ss_pred CcccCcccccCCCCCCCCCccccceeecCCCCccCCCceeecCCCCceEEeccCcccccccee---ccCCCcccceeeHH
Q 008205 425 LSVVPPEALYKEPSNRSASSQHLYSAVWPGQTTQKPRGWVFPNNGRHLRIGVPSQVIYPEFVA---QGKGTDKFSGYCID 501 (574)
Q Consensus 425 l~~~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~g~~~~~G~~id 501 (574)
+..... ... ...+++++|++...+||..+.. ...++.+++|||+|
T Consensus 371 ~~~~~~----------------------------~~~----~~~~~~l~v~~~~~~P~~~~~~~~~~~~~~~~~~G~~~d 418 (823)
T 3kg2_A 371 MVLTED----------------------------DTS----GLEQKTVVVTTILESPYVMMKANHAALAGNERYEGYCVD 418 (823)
T ss_dssp EEECCC----------------------------CCS----SCCCCCEEEEECCCTTTSEECTTGGGCCGGGGEESHHHH
T ss_pred ceeccC----------------------------ccc----ccCCCEEEEEEecCCCcEEEecCccccCCCCceEEEHHH
Confidence 654311 000 1236889999876666654321 12467899999999
Q ss_pred HHHHHHHhCCCCcCeEEEECCCCC------CCCChHHHHHHhhhcccccccccccceeeeEEEEeeCc----eeeecccc
Q 008205 502 VFTAVLELLPYAVPYKLVPFGDGH------NSPKRFDLLRLVSEEVSMKRKKIFFNLVILFAILANGG----FLVPCRSM 571 (574)
Q Consensus 502 l~~~~~~~l~f~~~y~~~~~~dg~------~~~~~~gli~~l~~~~~d~~~~~~~~~~~~~~~~~~~~----~~v~f~~~ 571 (574)
|++++++.|||+ |+++.++||+ .||+|+||+++|.+|++|++ +++++||++|+ |+.||+..
T Consensus 419 l~~~~a~~l~~~--~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~-------~~~~~~t~~R~~~~dfs~py~~~ 489 (823)
T 3kg2_A 419 LAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA-------IAPLTITLVREEVIDFSKPFMSL 489 (823)
T ss_dssp HHHHHHHHHTCC--EEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEE-------CSCCBCCHHHHTTEEECSCSEEE
T ss_pred HHHHHHHHcCCc--EEEEEccCCcccccCCCCCchhhHHHhhccccCcEE-------ecceecchhheeeEEeccchhhC
Confidence 999999999999 9999998765 56789999999999999999 99999999997 67777654
Q ss_pred c
Q 008205 572 T 572 (574)
Q Consensus 572 ~ 572 (574)
.
T Consensus 490 ~ 490 (823)
T 3kg2_A 490 G 490 (823)
T ss_dssp C
T ss_pred C
Confidence 3
No 2
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=100.00 E-value=5.3e-54 Score=436.77 Aligned_cols=373 Identities=16% Similarity=0.229 Sum_probs=318.5
Q ss_pred CCeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCC-CCCcEEEEEEecCCC-CHHHHHHHHHHhHhcCcEEEEcCCCh
Q 008205 30 PPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAI-LGGTKLKLTVHDTNY-SRFLGMVEALTLLENETVAIIGPQFS 107 (574)
Q Consensus 30 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~-l~g~~l~~~~~d~~~-~~~~a~~~~~~l~~~~v~aiiGp~~s 107 (574)
+++|+||+++|++.. ..+.|+++|+++||+++++ |+|++|+++++|++| |+.++++.+|++++++|.+||||.+|
T Consensus 3 ~~~i~IG~i~~~sg~---~~~~a~~lAv~eiN~~g~ill~g~~l~~~~~D~~~~d~~~a~~~a~~li~~~V~aiiG~~~S 79 (389)
T 3o21_A 3 PNTISIGGLFMRNTV---QEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGVYAIFGFYDQ 79 (389)
T ss_dssp CSEEEEEEEECTTCH---HHHHHHHHHHHHHHSCCCTTTCSSEEEEEEEECCTTCHHHHHHHHHHHHTTTCSCEEECCCT
T ss_pred CceeEEEEEeCCCCH---HHHHHHHHHHHHHhcCccccCCCcEEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEeCCCh
Confidence 688999999999853 7899999999999999999 699999999999988 99999999999999999999999999
Q ss_pred HHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHH
Q 008205 108 VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGD 187 (574)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~ 187 (574)
..+.++++++..++||+|+++. |.++ ..+|.||+.|+ ++.++++++++|||++|++|| |++||...++.+.+
T Consensus 80 ~~~~a~~~i~~~~~iP~Is~s~--~~~~--~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~ 151 (389)
T 3o21_A 80 MSMNTLTSFCGALHTSFVTPSF--PTDA--DVQFVIQMRPA---LKGAILSLLSYYKWEKFVYLY-DTERGFSVLQAIME 151 (389)
T ss_dssp TTHHHHHHHHHHHTCCEEECSC--CCSS--CCSSEEECSCC---SHHHHHHHHHHHTCCEEEEEE-CSTTCSHHHHHHHH
T ss_pred hHHHHHHHHhccCCCceeecCC--CCcc--CCceEEEEccC---HHHHHHHHHHhCCCCEEEEEE-cCcHHHHHHHHHHH
Confidence 9999999999999999998743 3332 34677788887 889999999999999999999 78999999999999
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCC
Q 008205 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTD 267 (574)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~ 267 (574)
.+++.|+||...+.++. .+..|+..+|++|+++++++|++++....+..++++|+++||..++|+||+++.+....+.
T Consensus 152 ~~~~~g~~v~~~~~~~~-~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~~~~~~~~~- 229 (389)
T 3o21_A 152 AAVQNNWQVTARSVGNI-KDVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDILL- 229 (389)
T ss_dssp HHHHTTCEEEEEECTTC-CCTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHHHHHHCSCSTTCEEEECCTTGGGCCC-
T ss_pred HhhcCCCeEEEEEecCC-CCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEccCCcccccH-
Confidence 99999999998876643 2445899999999999999999999999999999999999999999999998865544332
Q ss_pred CcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhccC-CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 008205 268 SQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRN-TLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISF 346 (574)
Q Consensus 268 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~ 346 (574)
.+......|++++....++.+.+++|+++|+++++.+ ++.+...+..+++++|||++++++|++++..++.++..
T Consensus 230 ----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~ 305 (389)
T 3o21_A 230 ----ERVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVDVSR 305 (389)
T ss_dssp ----HHHHHTTCEEEEEESCCTTCHHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC-
T ss_pred ----HHHhcCCcceEEEEEecCCChhHHHHHHHHHhccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhCccccc
Confidence 2344566789999988888999999999999876532 22222345778999999999999999999875443321
Q ss_pred cCCcccccccCCCccc--ccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeecCeEEEEEEeeCCCC
Q 008205 347 SEDSKLSELSRGDMRF--SSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSG 424 (574)
Q Consensus 347 ~~~~~~~~~~~~~~~c--~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~~~~~~VG~w~~~~g 424 (574)
. +...+| ....+|.+|..|+++|++++|+|++|+|+||++|+|.++.|+|+++.++++++||+|++..|
T Consensus 306 ~---------~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g 376 (389)
T 3o21_A 306 R---------GSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYER 376 (389)
T ss_dssp -------------CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTTE
T ss_pred C---------CCCCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCCcccceEEEEEEcCCCceeeeEEcCCCC
Confidence 1 122356 33467889999999999999999999999999999999999999999999999999999999
Q ss_pred Cccc
Q 008205 425 LSVV 428 (574)
Q Consensus 425 l~~~ 428 (574)
|+..
T Consensus 377 ~~~~ 380 (389)
T 3o21_A 377 FVPF 380 (389)
T ss_dssp EECC
T ss_pred cccc
Confidence 8654
No 3
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=100.00 E-value=1.4e-53 Score=435.29 Aligned_cols=377 Identities=17% Similarity=0.230 Sum_probs=319.5
Q ss_pred CCCeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCC-CCcEEEEEEecCC-CCHHHHHHHHHHhHhcCcEEEEcCCC
Q 008205 29 IPPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAIL-GGTKLKLTVHDTN-YSRFLGMVEALTLLENETVAIIGPQF 106 (574)
Q Consensus 29 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l-~g~~l~~~~~d~~-~~~~~a~~~~~~l~~~~v~aiiGp~~ 106 (574)
.|++|+||++||.+. .....|+++|||+||+++++| ++++|.+...+++ +++..+.+.+|++++++|.|||||.+
T Consensus 2 ~P~~I~IG~lf~~~~---~~~~~a~~~Av~~iN~~~~ilg~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiiG~~~ 78 (389)
T 4gpa_A 2 FPSSVQIGGLFIRNT---DQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYD 78 (389)
T ss_dssp CCSEEEEEEEECTTC---HHHHHHHHHHHHHHHTCSCTTTCSSEEEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred CCCeEEEEEEEcCCC---hHHHHHHHHHHHHHHhCCCCCCCCEEEEEEEecCCCchHHHHHHHHHHHHhcCCEEEEeCCc
Confidence 478999999999874 578899999999999999988 6778888877765 48999999999999999999999999
Q ss_pred hHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHH
Q 008205 107 SVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALG 186 (574)
Q Consensus 107 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~ 186 (574)
|..+.+++++++.++||+++++++.+.. ..|+ +++.|. ++.++++++++|+|++|++||+++.++ ..++.+.
T Consensus 79 S~~~~~v~~i~~~~~ip~is~~~~~~~~--~~~~--~~~~~~---~~~a~~~l~~~~~w~~vaii~~~d~~~-~~~~~~~ 150 (389)
T 4gpa_A 79 KRSVHTLTSFCSALHISLITPSFPTEGE--SQFV--LQLRPS---LRGALLSLLDHYEWNCFVFLYDTDRGY-SILQAIM 150 (389)
T ss_dssp TTTHHHHHHHHHHTTCEEEECSCCCSSC--CSSE--EECSCC---CHHHHHHHHHHTTCCEEEEEECSTTCS-HHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCceecccccccc--ccCC--ccccCC---HHHHHHHHHHHcCCcEEEEEEecchhh-HHHHHHH
Confidence 9999999999999999999976554322 2344 445454 347999999999999999999777654 5678888
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCC
Q 008205 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDT 266 (574)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~ 266 (574)
+.+.+.|++|.....++ ....++..++++++..++++|++.+....+..++++|+++||..++|+|++++++......
T Consensus 151 ~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~i~~~~~~vIv~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~ 228 (389)
T 4gpa_A 151 EKAGQNGWHVSAICVEN--FNDVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKDISL 228 (389)
T ss_dssp HHHHTTTCEEEEEECTT--CCHHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHTCSBTTCEEEECSSBGGGSCC
T ss_pred HHHHhcCceEEEEeecC--CcchhHHHHHHHhhccCCcEEEEEechhHHHHHHHHHHHhCCCCCceEEEEeCccccchhh
Confidence 99999999998876555 5678999999999999999999999999999999999999999999999999877655443
Q ss_pred CCcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 008205 267 DSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISF 346 (574)
Q Consensus 267 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~ 346 (574)
.+......|+++++...+..+.+++|.++|++.+..........+..+++++||||+++|+||+++.+++.+...
T Consensus 229 -----~~~~~~~~~i~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~YDAV~~~A~Al~~~~~~~~~~~~ 303 (389)
T 4gpa_A 229 -----ERFIHGGANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSETPPKYTSALTYDGVLVMAETFRSLRRQKIDISR 303 (389)
T ss_dssp -----HHHHHHBCEEEEEECSCTTSHHHHHHHHHHTTSCTTTSTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred -----hhhhhcccceEEEEeecCCChHHHHHHHHHHHHhhhhcccCCCChhHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 455677889999999999999999999999887654333334457788999999999999999999887654321
Q ss_pred cCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeecCeEEEEEEeeCCCCCc
Q 008205 347 SEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLS 426 (574)
Q Consensus 347 ~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~~~~~~VG~w~~~~gl~ 426 (574)
. .....+.|....+|.+|..|+++|++++|+|+||+|+||++|+|.++.|+|+|++++++++||+|++.+||+
T Consensus 304 ~-------~~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~~~~VG~W~~~~gl~ 376 (389)
T 4gpa_A 304 R-------GNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDKLV 376 (389)
T ss_dssp T-------TCCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTEEEEEEEEETTTEEE
T ss_pred c-------CCccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCCCCEEEEEEEECCEEEEEEEEECCCCeE
Confidence 1 123345567778899999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCc
Q 008205 427 VVPP 430 (574)
Q Consensus 427 ~~~~ 430 (574)
+..+
T Consensus 377 ~~~~ 380 (389)
T 4gpa_A 377 LIQD 380 (389)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 7644
No 4
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=100.00 E-value=7.7e-52 Score=422.50 Aligned_cols=375 Identities=19% Similarity=0.263 Sum_probs=309.2
Q ss_pred CeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCH-HHHHHHHHHhHhcCcEEEEcCCChH-
Q 008205 31 PVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSR-FLGMVEALTLLENETVAIIGPQFSV- 108 (574)
Q Consensus 31 ~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~-~~a~~~~~~l~~~~v~aiiGp~~s~- 108 (574)
+.|+||+++|+++..|.....|+++|+++||+++++|+|++|+++++|+++++ ..+...+|++++++|.+||||.+|.
T Consensus 3 ~~ikIG~~~~~s~~~G~~~~~a~~lAv~eiN~~ggil~g~~l~~~~~D~~~~~~~~~~~~~~~l~~~~V~aiiG~~~S~~ 82 (393)
T 3om0_A 3 SSLRMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQILPKGVVSVLGPSSSPA 82 (393)
T ss_dssp CEEEEEEEECCCCSSCCCHHHHHHHHHHHHHHSCCSSCCCEEEEEEEECCSSCHHHHHHHHHHHGGGCCSCEECCSSCHH
T ss_pred cceeEEEEecCCCcccHHHHHHHHHHHHHHhcCcccccCcEEEEEEEecCCCchhHHHHHHHHHHhcCcEEEECCCCchh
Confidence 57999999999988999999999999999999999999999999999999965 5677889999988999999999995
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCce--EEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHH
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFF--VRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALG 186 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~--~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~ 186 (574)
++.++++++..++||+|++++++. ....+|++ ||+.|++..++.++++++++|||++|++||++++|+....+ +.
T Consensus 83 ~~~a~~~i~~~~~ip~is~~a~~~--~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~vaii~~~~~~g~~l~~-~~ 159 (393)
T 3om0_A 83 SASTVSHICGEKEIPHIKVGPEET--PRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSASLICAKAECLLRLEE-LV 159 (393)
T ss_dssp HHHHHHHHHHHHTCCEEECSCCCC--C----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEEEEESSTTHHHHTHH-HH
T ss_pred HHHHHHHHHhccCCCeEeccCCcC--ccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHH-HH
Confidence 557999999999999999876541 12468888 99999999999999999999999999999999988876544 44
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCC
Q 008205 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDT 266 (574)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~ 266 (574)
+.+.+.|++|.... ++ +..|+..++++|+++++++|++++....+..++++|+++||..+.|+||++++.....+.
T Consensus 160 ~~~~~~g~~v~~~~-~~---~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~l 235 (393)
T 3om0_A 160 RGFLISKETLSVRM-LD---DSRDPTPLLKEIRDDKVSTIIIDANASISHLVLRKASELGMTSAFYKYILTTMDFPILHL 235 (393)
T ss_dssp HHHHHSSSCEEEEE-CC----CCCSHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHTTTTSTTCEEEECCTTGGGCCC
T ss_pred HhhhccCCeEEEEe-cC---CCCCHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEecccccccch
Confidence 55677889987654 33 456789999999999999999999999999999999999999989999999876544332
Q ss_pred CCcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhcc-CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 008205 267 DSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRR-NTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNIS 345 (574)
Q Consensus 267 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~ 345 (574)
. .......|++++....+..+.+++|.++|+++++. |...+...+..+++.+|||++++++|++++.+...
T Consensus 236 ~-----~~~~~~~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~a~~~YDAv~~la~Al~~~~~~~~--- 307 (393)
T 3om0_A 236 D-----GIVEDSSNILGFSMFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRELNRSQE--- 307 (393)
T ss_dssp T-----TTCCSSCSEEEEECCCTTSTTHHHHHHHHHHHHTTTSCGGGCCSCCHHHHHHHHHHHHHHHHHHHHTTTSC---
T ss_pred h-----hhhccCCcEEEEEEecCCccHHHHHHHHHHHHhhhhccCCCCCCCchHHHHHHhHHHHHHHHHHHHhhccc---
Confidence 1 22245678999988888888899999999887763 21111124577899999999999999999854321
Q ss_pred ccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeecCeEEEEEEeeCCCCC
Q 008205 346 FSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGL 425 (574)
Q Consensus 346 ~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~~~~~~VG~w~~~~gl 425 (574)
+......|....+|.+|..|+++|++++|+|++|+++||++|+|.+..|+|++++++++++||+|++..||
T Consensus 308 ---------~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~gl 378 (393)
T 3om0_A 308 ---------IGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGHREIGVWYSNRTL 378 (393)
T ss_dssp ---------CCCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEEEETTEEEEEEEEECC---
T ss_pred ---------CcCCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEeCCCCcccceeEEEEEeccCCceEeeeEcCCCCc
Confidence 12234568777888899999999999999999999999999999899999999999999999999999998
Q ss_pred cccC
Q 008205 426 SVVP 429 (574)
Q Consensus 426 ~~~~ 429 (574)
+++.
T Consensus 379 ~~~~ 382 (393)
T 3om0_A 379 AMNA 382 (393)
T ss_dssp ----
T ss_pred cccc
Confidence 7653
No 5
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=100.00 E-value=1.3e-51 Score=417.68 Aligned_cols=367 Identities=17% Similarity=0.249 Sum_probs=295.0
Q ss_pred CeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-CHHHHHHHHHHhHhcCcEEEEcCCChHH
Q 008205 31 PVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNY-SRFLGMVEALTLLENETVAIIGPQFSVI 109 (574)
Q Consensus 31 ~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~-~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 109 (574)
.+|+||++||++. ...+.|+++|+++||++ |++|++++.|+++ |+..+.+++|++++++|.+||||.+|..
T Consensus 1 ~~i~IG~i~~~sg---~~~~~~~~lAv~~iN~~-----g~~l~~~~~d~~~~d~~~a~~~~~~li~~~V~aiiG~~~S~~ 72 (376)
T 3hsy_A 1 NSIQIGGLFPRGA---DQEYSAFRVGMVQFSTS-----EFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS 72 (376)
T ss_dssp CEEEEEEEEETTC---HHHHHHHHHHHHHTCCS-----SCEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred CceeEEEEeCCCC---HHHHHHHHHHHHHHhcC-----CeEEEEEEeecCCCChHHHHHHHHHHHhcCcEEEECCCchhH
Confidence 3699999999974 46799999999999987 5899999999765 9999999999999999999999999999
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKL 189 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~ 189 (574)
+.++++++..++||+|+++++ . ...++|+||+.|+ ++.++++++++|||++|++|| |++||....+.+++.+
T Consensus 73 ~~av~~~~~~~~ip~is~~~~--~--~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~~~ 144 (376)
T 3hsy_A 73 VNTITSFCGTLHVSFITPSFP--T--DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144 (376)
T ss_dssp HHHHHHHHHHHTCEEEECSCC--C--CSCCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHHHHH
T ss_pred HHHHHHHhccCcCceeecCCC--C--cccCCceEEeCcc---HHHHHHHHHHhcCCCEEEEEE-eCchhHHHHHHHHHHh
Confidence 999999999999999998653 2 2346889999987 889999999999999999999 8899999999999999
Q ss_pred hhcCcEEEEEeecCCC--CChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCC
Q 008205 190 AEKRCRLSHKVPLSPK--GSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTD 267 (574)
Q Consensus 190 ~~~g~~v~~~~~~~~~--~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~ 267 (574)
++.|++|.....++.. .+..|+..++++|+++++++|++++....+..++++|+++||..++|+||++++.....+.
T Consensus 145 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~- 223 (376)
T 3hsy_A 145 AEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL- 223 (376)
T ss_dssp HHHTCEEEEEECTTCC--------------------CEEEEESCHHHHHHHHHHHHHHTSSGGGCEEEECSSBTTSTTG-
T ss_pred hhcCCeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHHcccCCCCcEEEEcCCCccccch-
Confidence 9999999887655432 2357899999999999999999999999999999999999999889999999854332221
Q ss_pred CcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhcc-CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 008205 268 SQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRR-NTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISF 346 (574)
Q Consensus 268 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~ 346 (574)
.+......+++++.+..++.+.+++|+++|+++++. +++.+...++.+++++|||++++++|++++.+++..+..
T Consensus 224 ----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~~la~Ai~~~~~~~~~~~~ 299 (376)
T 3hsy_A 224 ----LKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISR 299 (376)
T ss_dssp ----GGSCCTTCEEEEEESCCTTSHHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCCCSC
T ss_pred ----HHhhcCCcCceEEEEecCCchHHHHHHHHHHhccccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 122233445888888888889999999999987652 222222347888999999999999999999875443221
Q ss_pred cCCcccccccCCCccc--ccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeecCeEEEEEEeeCCCC
Q 008205 347 SEDSKLSELSRGDMRF--SSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSG 424 (574)
Q Consensus 347 ~~~~~~~~~~~~~~~c--~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~~~~~~VG~w~~~~g 424 (574)
. +....| ....+|.+|..|+++|++++|+|++|+|+||++|+|.+..|+|++++++++++||+|++.+|
T Consensus 300 ~---------~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g 370 (376)
T 3hsy_A 300 R---------GNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDK 370 (376)
T ss_dssp C---------CCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEETTEEEEEEEEETTTE
T ss_pred C---------CCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCCCCCccceEEEEEecCCCceEEEEEcCCCC
Confidence 1 123356 55667888999999999999999999999999999999999999999999999999999998
Q ss_pred Ccc
Q 008205 425 LSV 427 (574)
Q Consensus 425 l~~ 427 (574)
|+.
T Consensus 371 ~~~ 373 (376)
T 3hsy_A 371 MVV 373 (376)
T ss_dssp EEE
T ss_pred cee
Confidence 764
No 6
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=100.00 E-value=2.5e-51 Score=419.18 Aligned_cols=376 Identities=21% Similarity=0.277 Sum_probs=322.0
Q ss_pred CCeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC-CCHHHHHHHHHHhHhcCcEEEEcCCCh
Q 008205 30 PPVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTN-YSRFLGMVEALTLLENETVAIIGPQFS 107 (574)
Q Consensus 30 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~-~~~~~a~~~~~~l~~~~v~aiiGp~~s 107 (574)
+++|+||+++|++ +..|.....|+++|+++||+++++|++++|++++.|+. .|+..+.+.+|++++++|.+||||.+|
T Consensus 2 ~~~i~IG~l~~~sg~~~g~~~~~a~~lAv~eiN~~ggil~~~~l~~~~~~~~~~d~~~~~~~a~~l~~~~V~aiiG~~~S 81 (395)
T 3h6g_A 2 THVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHS 81 (395)
T ss_dssp CEEEEEEEEEEESSSCSCCHHHHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHHHHCCSCEECCSSH
T ss_pred CcceEEEEEecCCCcccchHHHHHHHHHHHHHhcCccccCCceEEEEEeecCCcChHHHHHHHHHhhhcCcEEEECCCCh
Confidence 4689999999996 45788999999999999999999999999999998887 589999999999999999999999999
Q ss_pred HHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHH
Q 008205 108 VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGD 187 (574)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~ 187 (574)
..+.+++++++.++||+|+++++++.+++ ..+|+||+.|++..++.+++++++++||++|++|| +++||....+.+++
T Consensus 82 ~~~~a~~~~~~~~~ip~is~~~~~~~l~~-~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~~ 159 (395)
T 3h6g_A 82 SSANAVQSICNALGVPHIQTRWKHQVSDN-KDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY-DDSTGLIRLQELIK 159 (395)
T ss_dssp HHHHHHHHHHHHTTCCEEECSCCCCCTTC-CCCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE-SSTHHHHHTHHHHT
T ss_pred hHHHHHHHHHhcCCCCeEeeccCcccccc-cCceEEEecCCHHHHHHHHHHHHHHCCCeEEEEEE-EChhHHHHHHHHHH
Confidence 99999999999999999999998888876 45789999999999999999999999999999998 66789999999999
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCC
Q 008205 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTD 267 (574)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~ 267 (574)
.+++.|+++.... ++ .+..|+..++++|+++++++|++++....+..++++|+++||..+.|+||+++......+..
T Consensus 160 ~~~~~g~~v~~~~-~~--~~~~d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~~qa~~~gl~~~~~~~i~~~~~~~~~~~~ 236 (395)
T 3h6g_A 160 APSRYNLRLKIRQ-LP--ADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVE 236 (395)
T ss_dssp GGGTSSCEEEEEE-CC--SSGGGGHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCSTTCEEEECCTTGGGBCCT
T ss_pred hhhcCCceEEEEE-eC--CCchhHHHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHccccCCceEEEEecCceeEechH
Confidence 9999999998865 65 35788999999999999999999999999999999999999999999999987544332221
Q ss_pred CcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhcc-CCCC----CCCCCChhHHHHHHHHHHHHHHHHHHhhcCC
Q 008205 268 SQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRR-NTLN----GPIGLNSFGLYAYDTLWLLAHAIGAFFDQGG 342 (574)
Q Consensus 268 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~----~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~ 342 (574)
.......+++++.+..+.++.+++|.++|++++.. .+.. ....++.+++++|||++++++|++++...
T Consensus 237 -----~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav~~~a~Al~~a~~~-- 309 (395)
T 3h6g_A 237 -----PYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQM-- 309 (395)
T ss_dssp -----TTTTSCCEEEEEECSCTTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHHHHHHHHTCTTC--
T ss_pred -----HhccCccceEEEEEecCCcHHHHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhHHHHHHHHHHhhhcC--
Confidence 11122334688888888889999999999875532 1111 11125678999999999999999986432
Q ss_pred CccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcC-CCCCCCCcEEEEEeecCeEEEEEEeeC
Q 008205 343 NISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTS-DRDLINPAYEVINVIGTGSRRIGYWSN 421 (574)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~-~G~r~~~~~~i~~~~~~~~~~VG~w~~ 421 (574)
.+..+.|.....|.+|..|+++|++++|+|++|+++||+ +|+|.+..|+|++++++++++||.|++
T Consensus 310 -------------~~~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~~~~~~~~~~vG~w~~ 376 (395)
T 3h6g_A 310 -------------TVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDP 376 (395)
T ss_dssp -------------CCCCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETTEEEEEEEEET
T ss_pred -------------CCcCCCCCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecCCeEEEEEeccCCceEEEEEcC
Confidence 123456888888999999999999999999999999998 999999999999999999999999999
Q ss_pred CCCCcccCc
Q 008205 422 HSGLSVVPP 430 (574)
Q Consensus 422 ~~gl~~~~~ 430 (574)
..||++..+
T Consensus 377 ~~g~~~~~~ 385 (395)
T 3h6g_A 377 ASGLNMTES 385 (395)
T ss_dssp TTEECCCC-
T ss_pred CCCccccCC
Confidence 999877543
No 7
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=100.00 E-value=4.8e-50 Score=407.65 Aligned_cols=370 Identities=18% Similarity=0.246 Sum_probs=313.7
Q ss_pred CCCCeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-CHHHHHHHHHHhHhcCcEEEEcCCC
Q 008205 28 TIPPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNY-SRFLGMVEALTLLENETVAIIGPQF 106 (574)
Q Consensus 28 ~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~-~~~~a~~~~~~l~~~~v~aiiGp~~ 106 (574)
..+++|+||+++|++.. ....|+++|+++||+++ +|++++.|+++ |+..+++++|++++++|.+||||.+
T Consensus 6 ~~~~~ikIG~~~~~sg~---~~~~a~~lAv~~iN~~g------~l~~~~~D~~~~d~~~a~~~~~~l~~~~V~aiiG~~~ 76 (384)
T 3saj_A 6 AMPNNIQIGGLFPNQQS---QEHAAFRFALSQLTEPP------KLLPQIDIVNISDSFEMTYRFCSQFSKGVYAIFGFYE 76 (384)
T ss_dssp CCCSEEEEEEEESCSSS---HHHHHHHHHHTTCCSSS------EEEEEEEECCTTCHHHHHHHHHHHHHTTCSCEEECCC
T ss_pred CCCcceeEEEEecCCCH---HHHHHHHHHHHHHhcCC------ccceeeEecccCchhhHHHHHHHHHhcCeEEEECCCC
Confidence 45789999999999853 78999999999999875 89999999987 9999999999999999999999999
Q ss_pred hHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHH
Q 008205 107 SVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALG 186 (574)
Q Consensus 107 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~ 186 (574)
|..+.++++++..++||+|++. ++.++ ..+|.||+.|+ ++.+++++++++||++|++|| +++||....+.++
T Consensus 77 S~~~~a~~~~~~~~~iP~is~~--~~~~~--~~~~~~~~~p~---~~~a~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~ 148 (384)
T 3saj_A 77 RRTVNMLTSFCGALHVCFITPS--FPVDT--SNQFVLQLRPE---LQEALISIIDHYKWQTFVYIY-DADRGLSVLQRVL 148 (384)
T ss_dssp HHHHHHHHHHHHHHTCCEEECS--CCCSS--CCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCeEecc--ccCcC--ccCceEEeccc---HHHHHHHHHHHCCCcEEEEEE-eCchhHHHHHHHH
Confidence 9999999999999999999984 34443 45778888887 789999999999999999999 6689999999999
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCC
Q 008205 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDT 266 (574)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~ 266 (574)
+.+++.|++|......+ .+..++..++.+|+.+++++|++++....+..++++|+++||...+|+||+++.+....+.
T Consensus 149 ~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~ 226 (384)
T 3saj_A 149 DTAAEKNWQVTAVNILT--TTEEGYRMLFQDLEKKKERLVVVDCESERLNAILGQIVKLEKNGIGYHYILANLGFMDIDL 226 (384)
T ss_dssp HHHHHHTCEEEEEEGGG--CCHHHHHHTTTTCCSCSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEEESSSCGGGSCH
T ss_pred HHhhhcCceEEEEEecc--CCchhHHHHHHHHhccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCcEEEEECCCcccccH
Confidence 99999999999877543 4677899999999999999999999999999999999999999989999999864433222
Q ss_pred CCcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhcc-CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 008205 267 DSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRR-NTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNIS 345 (574)
Q Consensus 267 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~ 345 (574)
........|++++.+..+.++.+++|.++|+++++. ++..+...++.+++++|||++++++|++++.+.+.++.
T Consensus 227 -----~~~~~~~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~p~~~~~~~~~~aa~~YDav~~~a~Al~~~~~~~~~~~ 301 (384)
T 3saj_A 227 -----NKFKESGANVTGFQLVNYTDTIPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVMAEAFQSLRRQRIDIS 301 (384)
T ss_dssp -----HHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred -----HHhhCCCcceEEEEeecCCChHHHHHHHHHHhcCccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhcccee
Confidence 233455678999998888899999999999988753 23222234577899999999999999999987544332
Q ss_pred ccCCcccccccCCCcccccc--cccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeecCeEEEEEEeeCCC
Q 008205 346 FSEDSKLSELSRGDMRFSSV--SIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHS 423 (574)
Q Consensus 346 ~~~~~~~~~~~~~~~~c~~~--~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~~~~~~VG~w~~~~ 423 (574)
.+ +....|... .+|.+|..|+++|++++|+|++|+|+||++|+|.+..|+|++++++++++||.|++..
T Consensus 302 ~~---------~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~W~~~~ 372 (384)
T 3saj_A 302 RR---------GNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNEDD 372 (384)
T ss_dssp CC---------CSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTT
T ss_pred cC---------CCCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCCCCcccceEEEEEeccCCcceeEEEcCCC
Confidence 11 123457654 5678899999999999999999999999999999999999999999999999999998
Q ss_pred CCcccCc
Q 008205 424 GLSVVPP 430 (574)
Q Consensus 424 gl~~~~~ 430 (574)
||++..+
T Consensus 373 gl~~~~~ 379 (384)
T 3saj_A 373 KFVPAAL 379 (384)
T ss_dssp EEEECCC
T ss_pred CccccCc
Confidence 8876543
No 8
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=100.00 E-value=3.5e-50 Score=415.81 Aligned_cols=368 Identities=20% Similarity=0.340 Sum_probs=311.6
Q ss_pred CCCCeEEEEEEeccCC-----ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc--CcEE
Q 008205 28 TIPPVLNIGAVFALNS-----TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN--ETVA 100 (574)
Q Consensus 28 ~~~~~i~IG~l~~~~~-----~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~--~v~a 100 (574)
...++|+||+++|++. ..|.....|+++|+++||++ ++++|++|+++++|+++++..+++.+++++.+ +|.+
T Consensus 10 ~~~~~i~IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~-g~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~~~~v~a 88 (433)
T 4f11_A 10 PSSPPLSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNE-SLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLM 88 (433)
T ss_dssp -CCCEEEEEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHT-TTTTTCEEEEEEEECTTCHHHHHHHHHHHHHHSCCCSE
T ss_pred CCCCceEEEEEEEecCCCCCCccchhHHHHHHHHHHHHhcc-CCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCCceEE
Confidence 4567899999999984 45788999999999999999 78899999999999999999999999999974 8999
Q ss_pred EEcCCChHHHHHHHHhhccCCccEEecccCCCCcCCC-CCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCc
Q 008205 101 IIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSL-QYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGR 179 (574)
Q Consensus 101 iiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~-~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~ 179 (574)
||||.+|..+.++++++..++||+|+++++++.+++. .|||+||+.|++..++.+++++++++||++|++||+++++|.
T Consensus 89 viG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g~ 168 (433)
T 4f11_A 89 VFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFS 168 (433)
T ss_dssp EEECCSHHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHH
T ss_pred EECCCcchHHHHHHHHHHhcCceEEEcccCCccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEEecchhhH
Confidence 9999999999999999999999999999999999884 799999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCc
Q 008205 180 NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDW 259 (574)
Q Consensus 180 ~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~ 259 (574)
...+.+++.+++.|++|.....++ .|+..++++|+++++++|++++....+..++++|+++||...+|+||.++.
T Consensus 169 ~~~~~~~~~~~~~g~~v~~~~~~~-----~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~ 243 (433)
T 4f11_A 169 EVRNDLTGVLYGEDIEISDTESFS-----NDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGW 243 (433)
T ss_dssp HHHHHHHHHSSSSSCEEEEEEEES-----SCCHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTCCSTTCEEEEESC
T ss_pred HHHHHHHHHHHHcCceEEEEeccC-----cCHHHHHHHHhhCCCeEEEEeCcHHHHHHHHHHHHHcCCCCCCeEEEEcCc
Confidence 999999999999999999887775 257789999999999999999999999999999999999988899999987
Q ss_pred cccccC--------CCCcCChhhhhhccceEEEEEecCCC--------hHHHHHHHHHHHh-hccCCCCCCCCCChhHHH
Q 008205 260 LSSILD--------TDSQLHSEKMDDIQGVLTLRMYTQSS--------EEKRKFVTRWRHL-TRRNTLNGPIGLNSFGLY 322 (574)
Q Consensus 260 ~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~ 322 (574)
....+. .............+|++++.+..+.. +..++|.++|+++ ++ ..++.++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~~~-------~~~~~~a~~ 316 (433)
T 4f11_A 244 YEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSG-------VGPSKFHGY 316 (433)
T ss_dssp SCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHHTT-------SCCCTTHHH
T ss_pred chHhHhcccccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcccCCCCHHHHHHHHHHhcCC-------CCcccchhh
Confidence 332221 00111133457889999998866432 3478899999876 32 345677889
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccccCCcccccccCCCcccc--cccccCchHHHHHHHHhcccccccccEEEcCCCCCCC
Q 008205 323 AYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFS--SVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLIN 400 (574)
Q Consensus 323 ~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~--~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~ 400 (574)
+||||+++++|++++..+.... +.+.+|. ....|.++..|+++|++++|+|++|+|.| ++|+|.
T Consensus 317 ~YDAv~~la~Al~~a~~~~~~~------------~~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f-~~Gd~~- 382 (433)
T 4f11_A 317 AYDGIWVIAKTLQRAMETLHAS------------SRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF-RNGERM- 382 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS------------SSCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEE-ETTEEE-
T ss_pred HHHHHHHHHHHHHHHHHHHhcc------------CCCCcccccccccHHHHHHHHHHHHhcEEEccceEEEE-ecCcee-
Confidence 9999999999999986541100 0011111 12235568999999999999999999999 899986
Q ss_pred CcEEEEEeecCeEEEEEEeeCC
Q 008205 401 PAYEVINVIGTGSRRIGYWSNH 422 (574)
Q Consensus 401 ~~~~i~~~~~~~~~~VG~w~~~ 422 (574)
..|+|++++++++++||.|++.
T Consensus 383 ~~~~I~~~~~g~~~~VG~~~~~ 404 (433)
T 4f11_A 383 GTIKFTQFQDSREVKVGEYNAV 404 (433)
T ss_dssp CEEEEEEEETTEEEEEEEEETT
T ss_pred eeEEEEEEECCceEEEEEEECC
Confidence 8999999999999999999864
No 9
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=1.6e-49 Score=413.46 Aligned_cols=372 Identities=22% Similarity=0.352 Sum_probs=308.7
Q ss_pred CCCCCeEEEEEEeccC------------C-ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHh
Q 008205 27 STIPPVLNIGAVFALN------------S-TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTL 93 (574)
Q Consensus 27 ~~~~~~i~IG~l~~~~------------~-~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l 93 (574)
...+++|.||++||++ . ..|.+...|+++|+|+||+++++|||++|+++++|+++++..|++.+.++
T Consensus 8 ~~~~GDi~iGglf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpg~~L~~~i~D~~~~~~~a~~~~~~l 87 (479)
T 3sm9_A 8 IKIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEF 87 (479)
T ss_dssp EEECCSEEEEEEECCEEECC-CCSEEEECTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHHHHH
T ss_pred cccCCCEEEEEEEEeEECCCCCCCCcccchhhhHHHHHHHHHHHHHHhCCCccCCCCeEeEEEEecCCChHHHHHHHHHH
Confidence 4568999999999996 1 15678899999999999999999999999999999999999999999999
Q ss_pred Hhc-------------------------CcEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCCC-CCCceEEecC
Q 008205 94 LEN-------------------------ETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSL-QYPFFVRTTQ 147 (574)
Q Consensus 94 ~~~-------------------------~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~-~~~~~~r~~p 147 (574)
++. +|+|||||.+|..+.+++++++.+++|+|+++++++.++++ +|||+||+.|
T Consensus 88 l~~~~~~~~~pny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p 167 (479)
T 3sm9_A 88 VRASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVP 167 (479)
T ss_dssp HHTCC-----------------------CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTTTTEEESSC
T ss_pred HhCCCccCCCCCCccCCCCccccccCCCceEEEECCCCcHHHHHHHHHHhcCCccEECCCcCCccccCcccCCCeEEeCC
Confidence 874 59999999999999999999999999999999999999985 7999999999
Q ss_pred ChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHH-HHhhcCCCeEE
Q 008205 148 SDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTL-LTVSSMMSRIL 226 (574)
Q Consensus 148 s~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l-~~ik~~~~~vi 226 (574)
++..++.++++++++|||+||++|++|+++|...++.+++.+++.|+||+..+.++......++...+ +.|+++++++|
T Consensus 168 sd~~~~~a~~~ll~~fgw~~V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~a~vI 247 (479)
T 3sm9_A 168 PDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIRELLQKPNARVV 247 (479)
T ss_dssp CTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CHHHHHHHHHHHHTCTTCCEE
T ss_pred cHHHHHHHHHHHHHHCCCeEEEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCCCChHHHHHHHHHHHhcCCCeEE
Confidence 99999999999999999999999999999999999999999999999999988887554567888888 77889999999
Q ss_pred EEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCcCChhhhhhccceEEEEEecCCChHHHHHHH-------
Q 008205 227 ILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVT------- 299 (574)
Q Consensus 227 il~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~------- 299 (574)
|+++....+..+++++.++|+. ++||.++.|....... ........|++++.++..+.+.+++|++
T Consensus 248 i~~~~~~~~~~l~~~~~~~g~~---~~wI~s~~w~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~ 320 (479)
T 3sm9_A 248 VLFMRSDDSRELIAAASRANAS---FTWVASDGWGAQESII----KGSEHVAYGAITLELASQPVRQFDRYFQSLNPYNN 320 (479)
T ss_dssp EEECCHHHHHHHHHHHHHTTCC---CEEEECTTTTTCHHHH----TTCTTTTTTCEEEEECCCCCHHHHHHHHTCCTTTC
T ss_pred EEEcChHHHHHHHHHHHHhCCE---EEEEEechhhcCcccc----ccccccCceEEEEEeccCCCcchhhHhhccCcCcC
Confidence 9999999999999999999985 8999998775431111 0112467899999999888888888865
Q ss_pred --------HHHHhhc-----------cCCCCCCCC-----CChhHHHHHHHHHHHHHHHHHHhhcCCCccccCCcccccc
Q 008205 300 --------RWRHLTR-----------RNTLNGPIG-----LNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSEL 355 (574)
Q Consensus 300 --------~~~~~~~-----------~~~~~~~~~-----~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~ 355 (574)
.|+..++ .|++.+... .......+||||+++|+|||+++.+...
T Consensus 321 p~d~~~~~~w~~~f~C~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~------------ 388 (479)
T 3sm9_A 321 HRNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCP------------ 388 (479)
T ss_dssp TTCTTHHHHHHHHHTCBCCC---CSCBCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHST------------
T ss_pred CCCHHHHHHHHHHcCCCCCCCcccccCCCCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcC------------
Confidence 3554443 244433221 1133468999999999999999863211
Q ss_pred cCCCcccccccccCchHHHH-HHHHhcccccc------cc-cEEEcCCCCCCCCcEEEEEeec----CeEEEEEEee
Q 008205 356 SRGDMRFSSVSIFNGGKMLL-DNILQVNMTGV------TG-PIKFTSDRDLINPAYEVINVIG----TGSRRIGYWS 420 (574)
Q Consensus 356 ~~~~~~c~~~~~~~~g~~l~-~~l~~~~f~G~------tG-~v~Fd~~G~r~~~~~~i~~~~~----~~~~~VG~w~ 420 (574)
.....|.....+ ++++|+ ++|++++|.+. +| .|.||++|++ ...|+|+|++. ..+++||.|+
T Consensus 389 -~~~~~c~~~~~~-~~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~~-~~~YdI~n~~~~~~~~~~~~VG~~~ 462 (479)
T 3sm9_A 389 -NTTKLCDAMKIL-DGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDG-MGRYNVFNFQNVGGKYSYLKVGHWA 462 (479)
T ss_dssp -TCSSCCHHHHSC-CHHHHHHHTGGGCCEECTTC-----CCEECCCTTCBC-CCCEEEEEEEESSSCEEEEEEEEES
T ss_pred -CCCcCCCCCCCc-ChHHHHHHHhcceeeccccCccccCCCeEEECCCCCc-ccceEEEEEEECCCcEEEEEEEEEe
Confidence 011235443334 488999 99999999998 55 6999999996 48999999973 2468999997
No 10
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=5.7e-49 Score=418.08 Aligned_cols=393 Identities=21% Similarity=0.353 Sum_probs=320.3
Q ss_pred CCCCeEEEEEEeccCC-------------ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhH
Q 008205 28 TIPPVLNIGAVFALNS-------------TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLL 94 (574)
Q Consensus 28 ~~~~~i~IG~l~~~~~-------------~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~ 94 (574)
..+++|+||+++|++. ..|.....|+++|+|+||+++++|||++|+++++|+++++..|++.+.+++
T Consensus 10 ~~~g~i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~llpg~~L~~~i~D~~~~~~~a~~~a~~~l 89 (555)
T 2e4u_A 10 KIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFV 89 (555)
T ss_dssp EECCSEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred ecCCCEEEEEEEEeeECCCCCCccccccchhhhHHHHHHHHHHHHHhCCCCCCCCCeEEEEEEECCCChHHHHHHHHHHH
Confidence 4578999999999972 356778899999999999999999999999999999999999999988877
Q ss_pred -------------------------hcCcEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCCC-CCCceEEecCC
Q 008205 95 -------------------------ENETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSL-QYPFFVRTTQS 148 (574)
Q Consensus 95 -------------------------~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~-~~~~~~r~~ps 148 (574)
.++|.+||||.+|..+.+++++++.+++|+|+++++++.|+++ +|||+||+.|+
T Consensus 90 ~~~~~~~~~~ny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p~ 169 (555)
T 2e4u_A 90 RASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPP 169 (555)
T ss_dssp HTTC--------------------CCCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCC
T ss_pred hCcCcccCCCCcccCCCccccccccCCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcCCCccCCcccCCCceeeCCC
Confidence 3489999999999999999999999999999999999999984 79999999999
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc-CCCeEEE
Q 008205 149 DLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-MMSRILI 227 (574)
Q Consensus 149 ~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~-~~~~vii 227 (574)
+..++.++++++++|||+||++|++|++||....+.|++.+++.|+||+....++...+..++..++++|++ +++++||
T Consensus 170 d~~~~~a~~~ll~~fgw~~V~ii~~d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~~s~a~vIi 249 (555)
T 2e4u_A 170 DFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIRELLQKPNARVVV 249 (555)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEE
T ss_pred hHHHHHHHHHHHHHcCCeEEEEEEeeChHHHHHHHHHHHHHHHCCccEEEEEEeCCCCChHHHHHHHHHHhccCCCCEEE
Confidence 999999999999999999999999999999999999999999999999998888754467789999999964 7999999
Q ss_pred EEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCcCChhhhhhccceEEEEEecCCChHHHHHH---------
Q 008205 228 LHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFV--------- 298 (574)
Q Consensus 228 l~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~--------- 298 (574)
+++....+..+++++.++|+ +++||.++.|....... ........|++++.++....+.+++|+
T Consensus 250 ~~~~~~~~~~~~~~~~~~g~---~~~~i~s~~~~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~f~~~~~p~~~p 322 (555)
T 2e4u_A 250 LFMRSDDSRELIAAANRVNA---SFTWVASDGWGAQESIV----KGSEHVAYGAITLELASHPVRQFDRYFQSLNPYNNH 322 (555)
T ss_dssp EECCHHHHHHHHHHHHHTTC---CCEEEECTTTTTCGGGT----TTCHHHHTTCEEEEECCCCCHHHHHHHHTCCTTTCT
T ss_pred EEcCHHHHHHHHHHHHHhcC---CeEEEEeccccccchhh----ccchhhcceEEEEEeccCCCCcHHHHHhhCCcccCC
Confidence 99999999999999999987 78999998765432211 112356789999988765555555443
Q ss_pred ------HHHHHhhc-----------cCCCCCCC-----CCChhHHHHHHHHHHHHHHHHHHhhcCCCccccCCccccccc
Q 008205 299 ------TRWRHLTR-----------RNTLNGPI-----GLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELS 356 (574)
Q Consensus 299 ------~~~~~~~~-----------~~~~~~~~-----~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~ 356 (574)
+.|+..++ .|++.+.. .+..+++.+||||+++|+||+++..+...
T Consensus 323 ~~~~~~~~w~~~f~c~~~~~~~~~~~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~------------- 389 (555)
T 2e4u_A 323 RNPWFRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCP------------- 389 (555)
T ss_dssp TCTTHHHHHHHHTTCCCC------CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCT-------------
T ss_pred CCHHHHHHHHHHcCCCCCCCCccCCCCCCccccccccccccccchhhHHHHHHHHHHHHHHHhhhcC-------------
Confidence 45666553 13333222 13456889999999999999998753110
Q ss_pred CCCcccccccccCchHHHHH-HHHhcccc------ccccc-EEEcCCCCCCCCcEEEEEeec--C--eEEEEEEeeCCCC
Q 008205 357 RGDMRFSSVSIFNGGKMLLD-NILQVNMT------GVTGP-IKFTSDRDLINPAYEVINVIG--T--GSRRIGYWSNHSG 424 (574)
Q Consensus 357 ~~~~~c~~~~~~~~g~~l~~-~l~~~~f~------G~tG~-v~Fd~~G~r~~~~~~i~~~~~--~--~~~~VG~w~~~~g 424 (574)
.....|...... ++++|++ +|++++|. |.+|. |.||++|++. ..|+|++++. + .+++||.|++ .
T Consensus 390 ~~~~~~~~~~~~-~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~~-~~y~I~~~~~~~g~~~~~~VG~~~~--~ 465 (555)
T 2e4u_A 390 QTTKLCDAMKIL-DGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDGM-GRYNVFNLQQTGGKYSYLKVGHWAE--T 465 (555)
T ss_dssp TCSSCCGGGTSC-CHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCCC-CCEEEEEEECTTSSCEEEEEEEESS--S
T ss_pred CCCccccccCCC-CcccccHHhHhceeecccccccCCCCCeEEEcCCCCcc-ceEEEEEEEecCCcEEEEEEEEecc--e
Confidence 001124333223 5889999 99999999 99998 9999999975 8899999962 2 5799999984 3
Q ss_pred CcccCcccccCCCCCCCCCccccceeecCCCCccCCCcee
Q 008205 425 LSVVPPEALYKEPSNRSASSQHLYSAVWPGQTTQKPRGWV 464 (574)
Q Consensus 425 l~~~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~~~ 464 (574)
|.+ +...|.|++ .++|.++|
T Consensus 466 l~i------------------~~~~I~W~~--~~~P~S~C 485 (555)
T 2e4u_A 466 LSL------------------DVDSIHWSR--NSVPTSQC 485 (555)
T ss_dssp EEC------------------CGGGCCCTT--SSCCCCCS
T ss_pred EEE------------------eccccccCC--CCCcceee
Confidence 332 224689987 57888887
No 11
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=8.4e-49 Score=409.78 Aligned_cols=376 Identities=19% Similarity=0.327 Sum_probs=311.6
Q ss_pred CCCCCCeEEEEEEeccCCc-----------------cchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHH
Q 008205 26 VSTIPPVLNIGAVFALNST-----------------IGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMV 88 (574)
Q Consensus 26 ~~~~~~~i~IG~l~~~~~~-----------------~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~ 88 (574)
....+++|.||++||.+.. .|.+...|+.+|||+||+++++|||++|+++++|+|+++..|++
T Consensus 11 ~~~~~GDi~iGglf~vh~~~~~~~~~~~~c~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~tLg~~i~D~~~~~~~a~~ 90 (496)
T 3ks9_A 11 VARMDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALE 90 (496)
T ss_dssp CEEECCSEEEEEEECSBCCCCGGGTTTTCCCCBCTTTTHHHHHHHHHHHHHHHTCSSSSTTCCEEEEEEECTTCHHHHHH
T ss_pred ceecCCCEEEEEEEEeEEcCccCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCCCCCceEeEEEEEcCCCcHHHHH
Confidence 3567899999999998621 24567899999999999999999999999999999999999999
Q ss_pred HHHHhH-----------------------------hcCcEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCCC-C
Q 008205 89 EALTLL-----------------------------ENETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSL-Q 138 (574)
Q Consensus 89 ~~~~l~-----------------------------~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~-~ 138 (574)
.+.+++ +++|.|||||.+|..+.+++++++.+++|+|+++++++.++++ +
T Consensus 91 ~a~~ll~~~~~s~~~~~~~n~~C~~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~ 170 (496)
T 3ks9_A 91 QSIEFIRDSLISIRDEKDGINRCLPDGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTL 170 (496)
T ss_dssp HHHHHHSTTC--------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTT
T ss_pred HHHHHHHhhhccccccCCCCccccCcccccccccCCCceEEEECCCccHHHHHHHHHHhhcceeEECCCcCCccccCccC
Confidence 999987 3489999999999999999999999999999999999999984 6
Q ss_pred CCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHh
Q 008205 139 YPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTV 218 (574)
Q Consensus 139 ~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i 218 (574)
|||+||+.|++..++.++++++++|||+||++|++|++||....+.+++.+++.|+||+..+.++......++..++++|
T Consensus 171 ~p~~frt~psd~~~~~ai~~ll~~fgw~~V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~i 250 (496)
T 3ks9_A 171 YKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSNAGEKSFDRLLRKL 250 (496)
T ss_dssp CTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred CCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEeccHHHHHHHHHHHHHHHHcCceEEEEEEECCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988887556778899999999
Q ss_pred hcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCcCChhhhhhccceEEEEEecCCChHHHH
Q 008205 219 SSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRK 296 (574)
Q Consensus 219 k~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 296 (574)
++. ++++|++++....+..+++++.++|+.. ++.||.++.|....... ........|++++.++.++.+.+++
T Consensus 251 ~~~~~~a~vii~~~~~~~~~~l~~~~~~~g~~~-k~~~i~s~~w~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~ 325 (496)
T 3ks9_A 251 RERLPKARVVVCFCEGMTVRGLLSAMRRLGVVG-EFSLIGSDGWADRDEVI----EGYEVEANGGITIKLQSPEVRSFDD 325 (496)
T ss_dssp HTTTTTTCEEEEECCHHHHHHHHHHHHHHTCCS-CCEEEECTTTTTCHHHH----TTCHHHHTTCEEEEECCCCCHHHHH
T ss_pred HhccCceEEEEEecChHHHHHHHHHHHHhCCCC-cEEEEEechhccccccc----cccccccCceEEEeccCCcCcchHh
Confidence 984 8999999999999999999999999863 47899998775432111 1123567899999999999999988
Q ss_pred HHH---------------HHHHhhc---------------cCCCCCCCC----CChhHHHHHHHHHHHHHHHHHHhhcCC
Q 008205 297 FVT---------------RWRHLTR---------------RNTLNGPIG----LNSFGLYAYDTLWLLAHAIGAFFDQGG 342 (574)
Q Consensus 297 f~~---------------~~~~~~~---------------~~~~~~~~~----~~~~~~~~yDav~~~a~Al~~~~~~~~ 342 (574)
|++ .|+..+. .|++.+... .......+|+||+++|+|||+++.+..
T Consensus 326 fl~~~~p~~~p~d~~l~~~W~~~f~C~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh~m~~~~~ 405 (496)
T 3ks9_A 326 YFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALC 405 (496)
T ss_dssp HHTTCCTTTCCSCTTHHHHHHHHTTCBCCC-----CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhccCCcCCCCCCHHHHHHHHHHcCCCCCCCccccccccCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHhccC
Confidence 874 3554432 143333221 112234699999999999999986421
Q ss_pred CccccCCcccccccCCCcccccccccCchHHHHHHHHhccccccccc-EEEcCCCCCCCCcEEEEEeec--C---eEEEE
Q 008205 343 NISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGP-IKFTSDRDLINPAYEVINVIG--T---GSRRI 416 (574)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~-v~Fd~~G~r~~~~~~i~~~~~--~---~~~~V 416 (574)
. .....|....++ ++++|+++|++++|.+.+|+ |.||++|+. ...|+|+|++. + .+++|
T Consensus 406 ~-------------~~~~~c~~~~~~-~~~qL~~~Lk~v~f~~~~g~~v~fd~~gd~-~~~YdI~n~~~~~~~~~~~~~V 470 (496)
T 3ks9_A 406 P-------------GHVGLCDAMKPI-DGSKLLDFLIKSSFIGVSGEEVWFDEKGDA-PGRYDIMNLQYTEANRYDYVHV 470 (496)
T ss_dssp T-------------TCSSCCGGGSSC-CHHHHHHHHHTCEEECTTSCEEECCTTSCC-CCEEEEEEEEECC--CEEEEEE
T ss_pred C-------------CCCCCCcCCCCC-CHHHHHHHHHhcCCcCCCCCEEEECCCCCc-cceEEEEEEEECCCCCEEEEEE
Confidence 1 112245555556 48999999999999999995 999999996 47999999973 2 36899
Q ss_pred EEeeC
Q 008205 417 GYWSN 421 (574)
Q Consensus 417 G~w~~ 421 (574)
|.|+.
T Consensus 471 G~~~~ 475 (496)
T 3ks9_A 471 GTWHE 475 (496)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 99973
No 12
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=100.00 E-value=1.7e-48 Score=404.13 Aligned_cols=367 Identities=16% Similarity=0.225 Sum_probs=298.1
Q ss_pred CCCeEEEEEEeccCC---ccchhHHHHHHHHHHHHhcCCC----CCCCcEEEEEEecCCCCHHHHHHHHHHhH----hcC
Q 008205 29 IPPVLNIGAVFALNS---TIGKVAKVAIEAAVEDVNSNPA----ILGGTKLKLTVHDTNYSRFLGMVEALTLL----ENE 97 (574)
Q Consensus 29 ~~~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~----~l~g~~l~~~~~d~~~~~~~a~~~~~~l~----~~~ 97 (574)
.+++|+||+++|++. ..|.....|+++|+++||++++ +|+|++|+++++|++|++. +++.+.+++ .++
T Consensus 6 ~~~~i~IG~~~p~sg~~~~~g~~~~~a~~~Av~eiN~~~~~~~~ll~g~~l~~~~~D~~~~~~-a~~~~~~~~~~~~~~~ 84 (441)
T 1jdp_A 6 PPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNR-ALFSLVDRVAAARGAK 84 (441)
T ss_dssp CCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTH-HHHHHHHHHHHTTTCC
T ss_pred CCCceEEEEEcCCCCCcccchhhhHHHHHHHHHHHHhCCCcccccCCCcEEEEEEecCCCchh-HHHHHHHHHHhhccCC
Confidence 357899999999973 3456778999999999999998 8899999999999999987 665555543 349
Q ss_pred cEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCCC--CCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcC
Q 008205 98 TVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSL--QYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD 175 (574)
Q Consensus 98 v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~--~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~ 175 (574)
|.+||||.+|..+.+++++++.+++|+|+++++++.++++ .|||+||+.|++..++.++++++++|||++|++||+|+
T Consensus 85 v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~d~ 164 (441)
T 1jdp_A 85 PDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDD 164 (441)
T ss_dssp CSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEECC
T ss_pred ceEEECCCchhhHHHHHHHHhhcCCcEEcCCCCchhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEEEEcC
Confidence 9999999999999999999999999999999999999884 69999999999999999999999999999999999999
Q ss_pred CCCcc---hHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCe
Q 008205 176 DHGRN---GIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGY 252 (574)
Q Consensus 176 ~~g~~---~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~ 252 (574)
++|.. ..+.+++.+++.|+||.....++. +..++..++++|+ +++++|++++....+..+++++.++||....|
T Consensus 165 ~~g~~~~~~~~~~~~~~~~~g~~v~~~~~~~~--~~~d~~~~l~~i~-~~~~vii~~~~~~~~~~~~~~~~~~gl~~~~~ 241 (441)
T 1jdp_A 165 KLERNCYFTLEGVHEVFQEEGLHTSIYSFDET--KDLDLEDIVRNIQ-ASERVVIMCASSDTIRSIMLVAHRHGMTSGDY 241 (441)
T ss_dssp SSSCHHHHHHHHHHHHHHHHTCEEEEEEECTT--SCCCHHHHHHHHH-HHCSEEEEESCHHHHHHHHHHHHHTTCTTTTC
T ss_pred CcccchHHHHHHHHHHHHhcCcEEEEEEecCC--cccCHHHHHHHhh-cCCcEEEEecCHHHHHHHHHHHHHcCCCCCCE
Confidence 99999 899999999999999988776652 3456889999999 99999999999999999999999999988889
Q ss_pred EEEEeCcccc------ccCCCCcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHH
Q 008205 253 VWIVTDWLSS------ILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDT 326 (574)
Q Consensus 253 ~~i~~~~~~~------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDa 326 (574)
+||.+++... .++..............++.++....+..+.+++|.++|+..+....-.....++.+++.+|||
T Consensus 242 v~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~YdA 321 (441)
T 1jdp_A 242 AFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVEGFHDA 321 (441)
T ss_dssp EEEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEEEECCCCCHHHHHHHHHHHHHHHTTTCCCCSSCCHHHHHHHHH
T ss_pred EEEEEeccccccccCCCCccCCcccHHHHHHHHhheEEeecCCCCchHHHHHHHHHHHHhhCCCCccchhhhHHHHHHHH
Confidence 9999883211 1111110001111345666677777777899999999998764321000111245678899999
Q ss_pred HHHHHHHHHHHhhcCCCccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEE
Q 008205 327 LWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVI 406 (574)
Q Consensus 327 v~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~ 406 (574)
|+++|+|++++..++.. |.++..|+++|++++|+|++|+|.||++|++. ..|+|+
T Consensus 322 v~~~A~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~Gd~~-~~~~I~ 376 (441)
T 1jdp_A 322 ILLYVLALHEVLRAGYS------------------------KKDGGKIIQQTWNRTFEGIAGQVSIDANGDRY-GDFSVI 376 (441)
T ss_dssp HHHHHHHHHHHHHTTCC------------------------TTCHHHHHHHHSSEEEEETTEEEEECTTSBBC-CEEEEE
T ss_pred HHHHHHHHHHHHHhCCC------------------------CCCHHHHHHHHhCCeeECCccceEECCCCCcc-ccEEEE
Confidence 99999999998754320 22588999999999999999999999999976 889999
Q ss_pred Eee---cCeEEEEEEeeCCCC
Q 008205 407 NVI---GTGSRRIGYWSNHSG 424 (574)
Q Consensus 407 ~~~---~~~~~~VG~w~~~~g 424 (574)
+++ ++.+++||.|++..+
T Consensus 377 ~~~~~~~g~~~~VG~~~~~~~ 397 (441)
T 1jdp_A 377 AMTDVEAGTQEVIGDYFGKEG 397 (441)
T ss_dssp EEEETTTTEEEEEEEEETTTT
T ss_pred ecccCCCCceEEEEEEcCCCC
Confidence 996 346899999998654
No 13
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=100.00 E-value=4.4e-49 Score=400.80 Aligned_cols=340 Identities=21% Similarity=0.289 Sum_probs=282.6
Q ss_pred CCCeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHH-hHhcCcEEEEc----
Q 008205 29 IPPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALT-LLENETVAIIG---- 103 (574)
Q Consensus 29 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~-l~~~~v~aiiG---- 103 (574)
.+++|+||+++|++ ....|+++|+++||++++. .+++|+++..|+++|+.++++.+|+ |++++|.+|||
T Consensus 2 ~~~~i~IG~i~~~s-----~~~~~~~lAv~~iN~~~~~-~~~~l~~~~~d~~~d~~~a~~~~~~~Li~~~V~aiiG~~~~ 75 (384)
T 3qek_A 2 DPKIVNIGAVLSTK-----KHEQIFREAVNQANKRHFT-RKIQLQATSVTHRPNAIQMALSVCEDLISSQVYAILVSHPP 75 (384)
T ss_dssp CCEEEEEEEEESSH-----HHHHHHHHHHHHHHHHSCC-SSEEEEEEEEECCSSHHHHHHHHHHHTGGGTEEEEEECC--
T ss_pred CceEEEEeEEeeCc-----hHHHHHHHHHHHHhccccC-CceEEEEEEecccCCHHHHHHHHHHHHHHcCceEEEEecCC
Confidence 35789999999997 6799999999999998854 5789999999999999999988777 78889999999
Q ss_pred -CCChHHHHHHHHhhccCCccEEecccCCCCcCC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcch
Q 008205 104 -PQFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNG 181 (574)
Q Consensus 104 -p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~ 181 (574)
|.++..+.++++++..+++|+|+++++++.+++ ..|||+||+.|++..++.++++++++|||++|++||+|++||...
T Consensus 76 ~~~~s~~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw~~v~ii~~d~~~G~~~ 155 (384)
T 3qek_A 76 APTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAA 155 (384)
T ss_dssp ------CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHH
T ss_pred CCccchhHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCcccHHH
Confidence 567778889999999999999999999998987 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCcEE-----------EEE-------eecC-CCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHH
Q 008205 182 IAALGDKLAEKRCRL-----------SHK-------VPLS-PKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAA 242 (574)
Q Consensus 182 ~~~l~~~~~~~g~~v-----------~~~-------~~~~-~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a 242 (574)
.+.|++.+++.|+++ .+. ..++ ...+..++..++++|+++++++|++++....+..++++|
T Consensus 156 ~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a 235 (384)
T 3qek_A 156 QKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARVIILSASEDDATAVYKSA 235 (384)
T ss_dssp HHHHHHHHC--------------CCSCCCCCCCCEEEEEEEECTTCSCCHHHHHHHHTSSCCEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCccccccccccceeeeccccCcccceecccCCchhhHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHH
Confidence 999999999988743 211 1111 013456899999999999999999999999999999999
Q ss_pred HHCCCCCCCeEEEEeCccccccCCCCcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhccCCCCCCCCCChhHHH
Q 008205 243 KHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLY 322 (574)
Q Consensus 243 ~~~gm~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (574)
+++||.+.+|+||.++.+... ........|++++++..+.. .++.
T Consensus 236 ~~~g~~~~~~~~i~~~~~~~~--------~~~~~~~~g~lg~~~~~~~~---------------------------~~~~ 280 (384)
T 3qek_A 236 AMLDMTGAGYVWLVGEREISG--------SALRYAPDGIIGLQLINGKN---------------------------ESAH 280 (384)
T ss_dssp HHTTCSSTTCEEECCSGGGSG--------GGGSSCCTTCEEEEETTTTC---------------------------HHHH
T ss_pred HHcCCccCCeEEEEecccccc--------ccccccCCccEEEEEcCCCc---------------------------hhHH
Confidence 999999889999999976532 12335788999998865421 2678
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccccCCcccccccCCCcccc-cccccCchHHHHHHHHhccc-ccccccEEEcCCCCCCC
Q 008205 323 AYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFS-SVSIFNGGKMLLDNILQVNM-TGVTGPIKFTSDRDLIN 400 (574)
Q Consensus 323 ~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~-~~~~~~~g~~l~~~l~~~~f-~G~tG~v~Fd~~G~r~~ 400 (574)
+||||+++|+|++++..+... ......|. ...+|..+..|.+++++++| +|++|+|+||++|+|.+
T Consensus 281 ~YdAV~~~a~Al~~~~~~~~~------------~~~~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G~v~fd~~G~~~~ 348 (384)
T 3qek_A 281 ISDAVAVVAQAIHELFEMENI------------TDPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKF 348 (384)
T ss_dssp HHHHHHHHHHHHHHHHTSSSC------------CCCCSCCTTCCCCCTTHHHHHHHHHTCCEEEETTEEECBCTTSCBCS
T ss_pred HHHHHHHHHHHHHHHHhccCC------------CCCCCccccCCCccccHHHHHHHHhcCCccCCCCcceEECCCCCCCc
Confidence 999999999999999865421 11123353 35688889999999999998 99999999999999888
Q ss_pred CcEEEEEeecCeEEEEEEeeC
Q 008205 401 PAYEVINVIGTGSRRIGYWSN 421 (574)
Q Consensus 401 ~~~~i~~~~~~~~~~VG~w~~ 421 (574)
..|+|+|++++++++||.|+.
T Consensus 349 ~~~~I~~~~~~~~~~VG~w~~ 369 (384)
T 3qek_A 349 AQYSIMNLQNRKLVQVGIFNG 369 (384)
T ss_dssp CCEEEEEEETTEEEEEEEECS
T ss_pred ccEEEEEEcCCceEEEEEEeC
Confidence 999999999999999999984
No 14
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=100.00 E-value=1.6e-48 Score=403.75 Aligned_cols=363 Identities=17% Similarity=0.202 Sum_probs=302.0
Q ss_pred CeEEEEEEeccC---CccchhHHH-HHHHHHHHHhcCCCCCCCcEEEEEEecC-----CCCHHHHHHHHHHhHh-cCcEE
Q 008205 31 PVLNIGAVFALN---STIGKVAKV-AIEAAVEDVNSNPAILGGTKLKLTVHDT-----NYSRFLGMVEALTLLE-NETVA 100 (574)
Q Consensus 31 ~~i~IG~l~~~~---~~~g~~~~~-a~~~Av~~iN~~~~~l~g~~l~~~~~d~-----~~~~~~a~~~~~~l~~-~~v~a 100 (574)
++|+||+++|++ +..|..... |+++|+++||+++++|||++|+++++|+ +|++..++..+++++. ++|.+
T Consensus 1 g~i~IG~l~p~sg~~~~~g~~~~~~a~~~Av~~iN~~ggil~g~~l~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v~a 80 (435)
T 1dp4_A 1 SDLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAV 80 (435)
T ss_dssp CEEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSE
T ss_pred CceEEEEEccCcCCCCceeHHHHHHHHHHHHHHHHhCCCCCCCceEEEEEecCcCcccccchhhHHHHHHHHHHhcCceE
Confidence 479999999998 345666777 9999999999999999999999999999 5556678778888774 59999
Q ss_pred EEcCCChHHHHHHHHhhccCCccEEecccCCCCcCCC-CCCceEEecCChHHHHHHHHHHHHHcCCeEEEEE------EE
Q 008205 101 IIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSL-QYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIAL------YV 173 (574)
Q Consensus 101 iiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~-~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii------~~ 173 (574)
||||.+|..+.++++++..++||+|+++++++.++++ .|||+||+.|++..++.++++++++|+|++|++| ++
T Consensus 81 viG~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~d~~~~ 160 (435)
T 1dp4_A 81 FLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGD 160 (435)
T ss_dssp EECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSSS
T ss_pred EECCCChHHHHHHHHHHHhcCCcEEcccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEEEEEccCCCC
Confidence 9999999999999999999999999999999999884 5999999999999999999999999999999999 66
Q ss_pred cCCCCcchHHHHHHHHhh-cCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCe
Q 008205 174 DDDHGRNGIAALGDKLAE-KRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGY 252 (574)
Q Consensus 174 ~~~~g~~~~~~l~~~~~~-~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~ 252 (574)
++++| ..++.+.+.+.+ .|++|.....++ .+..++..++++|++ ++++|++++....+..++++|+++||..++|
T Consensus 161 ~~~~g-~~~~~~~~~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~i~~-~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~ 236 (435)
T 1dp4_A 161 DRPCF-FIVEGLYMRVRERLNITVNHQEFVE--GDPDHYPKLLRAVRR-KGRVIYICSSPDAFRNLMLLALNAGLTGEDY 236 (435)
T ss_dssp CCHHH-HHHHHHHHHHHHHHCCEEEEEEECT--TCGGGHHHHHHHHHH-HCSEEEEESCHHHHHHHHHHHHHTTCCTTTC
T ss_pred cchHH-HHHHHHHHHHHhhcCeEEEEEEEec--CchhhHHHHHHHHHh-hCceEEEecChHHHHHHHHHHHHcCCCCCCE
Confidence 66677 566778888888 899998877653 356789999999998 9999999999999999999999999987789
Q ss_pred EEEEeCccccccC---------CC---CcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhcc---CCCCCCCCCC
Q 008205 253 VWIVTDWLSSILD---------TD---SQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRR---NTLNGPIGLN 317 (574)
Q Consensus 253 ~~i~~~~~~~~~~---------~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~---~~~~~~~~~~ 317 (574)
+||.++.+..... .. ....+.+.++.+|++++.+..+..+.+++|.++|++.++. |+..+ ..++
T Consensus 237 ~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~-~~~~ 315 (435)
T 1dp4_A 237 VFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNFTVED-GLKN 315 (435)
T ss_dssp EEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCCCSHHHHHHHHHHHHHHHHHHCCCCCC-SGGG
T ss_pred EEEEEecccccccccccccccCCcccCCcchHHHHHHhheeEEEecCCCCChhHHHHHHHHHHHhcCCCCccccc-chhh
Confidence 9999987654210 00 0001234457889988888777788899999998776531 33221 1356
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCC
Q 008205 318 SFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRD 397 (574)
Q Consensus 318 ~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~ 397 (574)
.+++.+|||++++++|++++..++.. +.++..|+++|++++|+|++|++.||++|+
T Consensus 316 ~~~~~~ydav~~~a~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~g~ 371 (435)
T 1dp4_A 316 IIPASFHDGLLLYVQAVTETLAQGGT------------------------VTDGENITQRMWNRSFQGVTGYLKIDRNGD 371 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHTTTTEEEEETTEEEEECTTSB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC------------------------CCCHHHHHHHHhCceeeccceeEEECCCCC
Confidence 67889999999999999998764321 125889999999999999999999999999
Q ss_pred CCCCcEEEEEe--ecCeEEEEEEeeCCC
Q 008205 398 LINPAYEVINV--IGTGSRRIGYWSNHS 423 (574)
Q Consensus 398 r~~~~~~i~~~--~~~~~~~VG~w~~~~ 423 (574)
+. ..|+|+++ .++.+++||.|++..
T Consensus 372 ~~-~~~~i~~~~~~~g~~~~vg~~~~~~ 398 (435)
T 1dp4_A 372 RD-TDFSLWDMDPETGAFRVVLNYNGTS 398 (435)
T ss_dssp BC-CCEEEEEECTTTCCEEEEEEECTTT
T ss_pred cc-ceeEEEEecCCCCcEEEEEEecCCC
Confidence 86 68999999 455699999998765
No 15
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=100.00 E-value=3.8e-49 Score=411.70 Aligned_cols=374 Identities=24% Similarity=0.384 Sum_probs=282.7
Q ss_pred CCCCCeEEEEEEeccCC-------------ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHh
Q 008205 27 STIPPVLNIGAVFALNS-------------TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTL 93 (574)
Q Consensus 27 ~~~~~~i~IG~l~~~~~-------------~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l 93 (574)
...+++|+||++||++. ..|.+...|+.+|+|+||+++++|||++|+++++|+|+++..|++.+.++
T Consensus 11 ~~~~gdi~IG~lf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~~L~~~i~D~~~~~~~a~~~a~~l 90 (481)
T 3mq4_A 11 IRIEGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTF 90 (481)
T ss_dssp EEECCSEEEEEEECSBCCC-----CCSBCTTTTHHHHHHHHHHHHHHTTCSSSSSSCCEEEEEEECTTCHHHHHHHHGGG
T ss_pred cccCCCEEEEEEEEceeCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCcCCCceEEEEEEeCCCChHHHHHHHHHH
Confidence 45678999999999982 35778899999999999999999999999999999999999999999988
Q ss_pred Hh-----------------------cCcEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCC-CCCCceEEecCCh
Q 008205 94 LE-----------------------NETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSD 149 (574)
Q Consensus 94 ~~-----------------------~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~ 149 (574)
++ ++|.+||||.+|..+.+++++++.+++|+|+++++++.+++ .+|||+||+.|++
T Consensus 91 l~~~~~~~~pny~C~~~~~~~~~~~~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd 170 (481)
T 3mq4_A 91 VQALIQKDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPD 170 (481)
T ss_dssp GGGGSCCCC--------------CCCCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCCCGGGGCTTTTTTEEESSCCT
T ss_pred HhCCcccCCCCcccCCCCCcccccCCCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccCCccccCcccCCceEEecCch
Confidence 86 47999999999999999999999999999999999999998 5799999999999
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhh-cCcEEEEEeecCCCCChh--hHHHHHHHhh-cCCCeE
Q 008205 150 LYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAE-KRCRLSHKVPLSPKGSRN--QIIDTLLTVS-SMMSRI 225 (574)
Q Consensus 150 ~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~-~g~~v~~~~~~~~~~~~~--~~~~~l~~ik-~~~~~v 225 (574)
..++.++++++++|||+||++|++|+++|....+.+++.+++ .|+||+..+.++...... ++...+++++ .+++++
T Consensus 171 ~~~~~a~~~ll~~fgw~~V~li~~d~~~G~~~~~~~~~~~~~~~Gi~va~~~~i~~~~~~~~~d~~~~l~~i~~~s~a~v 250 (481)
T 3mq4_A 171 SFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLSIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRA 250 (481)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEC---CHHHHHHHHHHHHCC---CCCEECCCCCCCCC------CCSHHHHCCCCC----C
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEEcchhHHHHHHHHHHHHHHhCCEEEEEEEEcCCCCccchHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999999999999999999999998885 799999887776433333 7788999998 579999
Q ss_pred EEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCCcCChhhhhhccceEEEEEecCCChHHHHHHH------
Q 008205 226 LILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVT------ 299 (574)
Q Consensus 226 iil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~------ 299 (574)
||+++....+..+++++.++|+.+ +++||.++.|....... ........|.+++.++..+.+.+++|++
T Consensus 251 Ii~~~~~~~~~~l~~~~~~~g~~~-~~~wI~s~~w~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~ 325 (481)
T 3mq4_A 251 VVIFANDEDIKQILAAAKRADQVG-HFLWVGSDSWGSKINPL----HQHEDIAEGAITIQPKRATVEGFDAYFTSRTLEN 325 (481)
T ss_dssp EEECCCSSHHHHHC-----------CCCEEEC---------------------CCCEEEEECCCCCHHHHHHHHTCCTTT
T ss_pred EEEEEChHHHHHHHHHHHHccCCc-ceEEEEECccccccccc----cccchhhccEEEEecCcCccccHHHHhhcCCcCc
Confidence 999999999999999999999864 48999998775432211 1223568899999999888898888865
Q ss_pred ---------HHHHhhc---------------cCCCCCCCC------CChhHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 008205 300 ---------RWRHLTR---------------RNTLNGPIG------LNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSED 349 (574)
Q Consensus 300 ---------~~~~~~~---------------~~~~~~~~~------~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~ 349 (574)
.|+..+. .|++.+... .......+||||+++|+|||+++.+...
T Consensus 326 ~p~d~~~~~~w~~~f~C~~~~~~~~~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~------ 399 (481)
T 3mq4_A 326 NRRNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCA------ 399 (481)
T ss_dssp CTTCTTHHHHHHHHHTCCC------------CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred CCCCHHHHHHHHHhcCCCCCCccccccccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCC------
Confidence 3444332 244433321 1134567999999999999999864211
Q ss_pred cccccccCCCcccccccccCchHHHHHHHHhcccccccc-cEEEcCCCCCCCCcEEEEEeec--C---eEEEEEEee
Q 008205 350 SKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTG-PIKFTSDRDLINPAYEVINVIG--T---GSRRIGYWS 420 (574)
Q Consensus 350 ~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG-~v~Fd~~G~r~~~~~~i~~~~~--~---~~~~VG~w~ 420 (574)
.....|.....+ ++++|+++||+++|.+.+| .|.||++|++. ..|+|+|++. + .+++||.|+
T Consensus 400 -------~~~~~c~~~~~~-~~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd~~-~~YdI~n~~~~~~~~~~~~~VG~~~ 467 (481)
T 3mq4_A 400 -------DYRGVCPEMEQA-GGKKLLKYIRNVNFNGSAGTPVMFNKNGDAP-GRYDIFQYQTTNTSNPGYRLIGQWT 467 (481)
T ss_dssp -----------CCHHHHTS-CHHHHHHHHHTCEEECTTSSEEECCTTSCCC-CEEEEEEEC-----CCCEEEEEEEE
T ss_pred -------CCCCCCCCCCCc-CHHHHHHHHhcceeecCCCCEEEECCCCCCc-eeEEEEEEEECCCCcEEEEEEEEEc
Confidence 011245544455 4889999999999999999 69999999964 8999999972 2 468999998
No 16
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=100.00 E-value=5.7e-46 Score=372.66 Aligned_cols=341 Identities=15% Similarity=0.203 Sum_probs=264.5
Q ss_pred CCeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEec-CCCCHHHHHHHHHHhHhc-CcEEEEc-CCC
Q 008205 30 PPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHD-TNYSRFLGMVEALTLLEN-ETVAIIG-PQF 106 (574)
Q Consensus 30 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d-~~~~~~~a~~~~~~l~~~-~v~aiiG-p~~ 106 (574)
+..++||++|..+.. +.+++-|++..|.-. +.+++.+++.. ..+||+.+.+.+|+++.. +|.|||| |.+
T Consensus 2 ~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~dp~~~~~~~C~~l~~~~V~aiIgg~~s 73 (364)
T 3qel_B 2 PPSIGIAVILVGTSD-----EVAIKDAHEKDDFHH---LSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDT 73 (364)
T ss_dssp CCEEEEEEEEESSCC-----HHHHTC------------CCSEEEEEEEEECCCSHHHHHHHHHHHHHHSCEEEEEEEESS
T ss_pred CCceEEEEEEcccch-----hhhhccccCcccccc---CCccceEEEEEecCCCHHHHHHHHHHHHHhCCeEEEEecCCC
Confidence 457999999976542 889999999998654 23678876554 567999999999999975 7988875 555
Q ss_pred hHHHHH--HHHhhccCCccEEecccCCC-CcCC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchH
Q 008205 107 SVIAHL--VSHIANEFQVPLLSFAATDP-SLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGI 182 (574)
Q Consensus 107 s~~~~~--va~~~~~~~iP~Is~~~~~~-~ls~-~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~ 182 (574)
+..+.+ ++.+|+.++||+|+++++++ .+++ .+||+|||+.|++..|+.|+++++++|||++|++||+|+ . ++
T Consensus 74 ~~~a~a~~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~~V~iI~~d~-~---g~ 149 (364)
T 3qel_B 74 DQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYF-P---GY 149 (364)
T ss_dssp CCTHHHHHHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESC-T---TH
T ss_pred CchHHHHHHHHHHhccCCCEEEeecCCCCcCCCcccCceEEEcCCChHHHHHHHHHHHHHCCCeEEEEEEeCC-c---cH
Confidence 443444 99999999999999999988 8988 479999999999999999999999999999999999885 3 44
Q ss_pred HHHHHHHhhc--C--cEEEEEeecCCCCChhhHHHHH-HHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEe
Q 008205 183 AALGDKLAEK--R--CRLSHKVPLSPKGSRNQIIDTL-LTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVT 257 (574)
Q Consensus 183 ~~l~~~~~~~--g--~~v~~~~~~~~~~~~~~~~~~l-~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~ 257 (574)
+.+.+.+++. | +|+.+...++...+..++...+ ++|+++++++||++|+.+.+..++++|.++||++++|+||++
T Consensus 150 ~~~~~~l~~~~~~~~ici~~~~~i~~~~~~~~~~~~l~~~i~~~~a~ViIv~~~~~~~~~ll~~a~~~g~~~~~y~wI~t 229 (364)
T 3qel_B 150 QDFVNKIRSTIENSFVGWELEEVLLLDMSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVP 229 (364)
T ss_dssp HHHHHHHHHHHHTCSSCCEEEEEEEECTTSCSSSCHHHHHHTTCCCSEEEEESCHHHHHHHHHHHHTTTCSSTTCEEEEC
T ss_pred HHHHHHHHHHhhccccceEEEEEEccCCCcccHHHHHHHHHHccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEe
Confidence 5666666554 4 4777665554333445677788 789999999999999999999999999999999999999999
Q ss_pred CccccccCCCCcCChhhhhhccceEEEEEecCCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 008205 258 DWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAF 337 (574)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~ 337 (574)
+.+....+.. . .....|++++++.. |+ ....+++||||+++|+|++++
T Consensus 230 ~~~~~~~~~~----~--~~~~~g~~~~~~~~------------W~--------------~~~~~~~yDaV~~~A~A~~~~ 277 (364)
T 3qel_B 230 SLVAGDTDTV----P--SEFPTGLISVSYDE------------WD--------------YGLPARVRDGIAIITTAASDM 277 (364)
T ss_dssp HHHHCSTTCC----C--TTSCTTCEECCBCT------------TT--------------SCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCcccc----c--ccCCCceEEEeecc------------ch--------------hhHHHHHHHHHHHHHHHHHHH
Confidence 8764333321 0 24568888887643 32 124678999999999999998
Q ss_pred hhcCCCccccCCcccccccCCCccccccc--ccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEee-cCeEE
Q 008205 338 FDQGGNISFSEDSKLSELSRGDMRFSSVS--IFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVI-GTGSR 414 (574)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~--~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~-~~~~~ 414 (574)
.++...++ ....+|.... +|.+|..|+++|++++|+|+ +++||++|+|.++.|+|+|++ +++++
T Consensus 278 ~~~~~~i~-----------~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~~~~Iinl~~~~~~~ 344 (364)
T 3qel_B 278 LSEHSFIP-----------EPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSEDGYQMHPKLVIILLNKERKWE 344 (364)
T ss_dssp HTTTSCCC-----------CCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCTTSSBSSCCEEEEEECTTSCEE
T ss_pred HhccCCCC-----------CCCCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECCCCCcccceEEEEEEcCCCCcE
Confidence 77543321 2345676654 68899999999999999998 899999999999999999998 57899
Q ss_pred EEEEeeCCCCCccc
Q 008205 415 RIGYWSNHSGLSVV 428 (574)
Q Consensus 415 ~VG~w~~~~gl~~~ 428 (574)
+||.|+ ..+|+|+
T Consensus 345 ~VG~W~-~~~L~~~ 357 (364)
T 3qel_B 345 RVGKWK-DKSLQMK 357 (364)
T ss_dssp EEEEEC-SSCEEES
T ss_pred EEEEEC-CCeEEeC
Confidence 999998 3566554
No 17
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=100.00 E-value=4.6e-39 Score=327.45 Aligned_cols=356 Identities=16% Similarity=0.144 Sum_probs=296.1
Q ss_pred CCeEEEEEEeccCC--ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCC
Q 008205 30 PPVLNIGAVFALNS--TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQF 106 (574)
Q Consensus 30 ~~~i~IG~l~~~~~--~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~ 106 (574)
.++|+||+++|++. ..|.....|+++|+++||+++++++|+++++++.|+++++..+.+.+++++.+ +|.+||||.+
T Consensus 3 ~~~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~~~ 82 (387)
T 3i45_A 3 LEAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTRHGVHALAGTFL 82 (387)
T ss_dssp CCCEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHHHHHHHHHHHCCSEEEECCS
T ss_pred CCCEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCCHHHHHHHHHHHHHhcCCEEEECCcc
Confidence 46899999999974 34667899999999999999999866999999999999999999999999985 9999999999
Q ss_pred hHHHHHHHHhhccCCccEEecccCCCCcCC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHH
Q 008205 107 SVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAAL 185 (574)
Q Consensus 107 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l 185 (574)
|..+.++++++...+||+|++.++++.++. ..+|++||+.|++..++.++++++.+++|++|++||+++++|....+.+
T Consensus 83 s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~ 162 (387)
T 3i45_A 83 SHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPNYEYGQSAVARF 162 (387)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeCCchHhHHHHHHH
Confidence 999999999999999999999888887774 5689999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc--CcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccc
Q 008205 186 GDKLAEK--RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSI 263 (574)
Q Consensus 186 ~~~~~~~--g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~ 263 (574)
++.+++. |+++.....++ .+..++...++++++.++++|++.+....+..++++++++|+... +|+.+......
T Consensus 163 ~~~l~~~~~g~~vv~~~~~~--~~~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~--~~i~~~~~~~~ 238 (387)
T 3i45_A 163 KELLLAARPEVTFVAEQWPA--LYKLDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRVRGLFAG--RQVVSMLTGEP 238 (387)
T ss_dssp HHHHHHHCTTCEEEEEECCC--TTCCCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHHHHHHTSSTT--CEEEEEEEESH
T ss_pred HHHHHHhCCCcEEEeeecCC--CCCcCHHHHHHHHHhCCCCEEEEcCccHHHHHHHHHHHHcCCCCC--CeEEeecCCCh
Confidence 9999998 88988776665 345689999999999999999999999999999999999998543 34443222110
Q ss_pred cCCCCcCChhh-hhhccceEEEEE--ecCCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhc
Q 008205 264 LDTDSQLHSEK-MDDIQGVLTLRM--YTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQ 340 (574)
Q Consensus 264 ~~~~~~~~~~~-~~~~~g~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~ 340 (574)
... ... ....+|++.... .....+..++|.++|+++++ ..++.+++.+|||++++++|++++..
T Consensus 239 ~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~-------~~p~~~~~~~Yda~~~~a~Al~~ag~- 305 (387)
T 3i45_A 239 EYL-----NPLKDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARWK-------EDPFVGSLVGYNTLTAMAVAFEKAGG- 305 (387)
T ss_dssp HHH-----GGGGGGCCSSCEEEECCGGGCCCHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred HHH-----HHhhhhccCceEEecccccCCCCHHHHHHHHHHHHHHC-------CCCCcHHHHHHHHHHHHHHHHHHhCC-
Confidence 000 011 124567665432 23467889999999998875 23567889999999999999998621
Q ss_pred CCCccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEee-cCeEEEEEEe
Q 008205 341 GGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVI-GTGSRRIGYW 419 (574)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~-~~~~~~VG~w 419 (574)
.++..|+++|++++|+|++|+++|++++++....+.|.+++ .++..+++.|
T Consensus 306 ----------------------------~~~~~v~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~g~~~i~~w 357 (387)
T 3i45_A 306 ----------------------------TESETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDGKGVMVDW 357 (387)
T ss_dssp ----------------------------CCHHHHHHHTTTCEEEETTEEEEBCTTTCBBCCCEEEEEEEEETTEEEEEEE
T ss_pred ----------------------------CCHHHHHHHHhcCCCcCCCCCeEEcCCCCccccceeEEEEEeeCCceeEEee
Confidence 15899999999999999999999998665667888888876 5677999999
Q ss_pred eCCCCCcccCc
Q 008205 420 SNHSGLSVVPP 430 (574)
Q Consensus 420 ~~~~gl~~~~~ 430 (574)
....|....++
T Consensus 358 ~~~~~~~~~p~ 368 (387)
T 3i45_A 358 RYVDGGSVLPP 368 (387)
T ss_dssp EEECGGGGSCC
T ss_pred EEeCchhcCCC
Confidence 98777655443
No 18
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=100.00 E-value=1.7e-38 Score=319.52 Aligned_cols=344 Identities=16% Similarity=0.115 Sum_probs=289.8
Q ss_pred CeEEEEEEeccCC---ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCCh
Q 008205 31 PVLNIGAVFALNS---TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFS 107 (574)
Q Consensus 31 ~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 107 (574)
++|+||+++|++. ..|.....++++|++++|+++++ +|+++++++.|+++++..+.+.++++++++|.+||||.++
T Consensus 1 ~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi-~G~~~~l~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~s 79 (356)
T 3ipc_A 1 MDVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGI-NGEQIKIVLGDDVSDPKQGISVANKFVADGVKFVVGHANS 79 (356)
T ss_dssp CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCB-TTBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CeEEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEecCCCCHHHHHHHHHHHHHCCCcEEEcCCCc
Confidence 4699999999973 35778899999999999999998 5899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHH-HHHcCCeEEEEEEEcCCCCcchHHHHH
Q 008205 108 VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADI-VDYFGWRNVIALYVDDDHGRNGIAALG 186 (574)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~l-l~~~~W~~v~ii~~~~~~g~~~~~~l~ 186 (574)
..+.++++++...+||+|++.++++.+++..++++||+.|++..++.+++++ ++++||+++++|+.+++++....+.++
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~ 159 (356)
T 3ipc_A 80 GVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLADETK 159 (356)
T ss_dssp HHHHHHHHHHHTTTCEEEESSCCCGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEecCCCCcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEEEeCCChHHHHHHHHHH
Confidence 9999999999999999999988888888777899999999999999999995 566799999999998889999999999
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCC
Q 008205 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDT 266 (574)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~ 266 (574)
+.+++.|+++.....++ .+..++...+++++..++++|++++....+..+++++++.|+..+ |+.++.+... +.
T Consensus 160 ~~l~~~g~~v~~~~~~~--~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~-~~ 233 (356)
T 3ipc_A 160 KAANAAGVTEVMYEGVN--VGDKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKAK---LVSGDGIVSN-EL 233 (356)
T ss_dssp HHHHHTTCCCSEEEECC--TTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHTCCCE---EEECGGGCSH-HH
T ss_pred HHHHHcCCEEEEEEeeC--CCCCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHCCCCCc---EEEeccccCH-HH
Confidence 99999999887666665 345678889999999999999999999999999999999998654 7766543321 10
Q ss_pred CCcCChhhhhhccceEEEEEecC-CChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 008205 267 DSQLHSEKMDDIQGVLTLRMYTQ-SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNIS 345 (574)
Q Consensus 267 ~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~ 345 (574)
. .......+|++......+ ..+..++|.+.|+++ + ..++.+++.+|||++++++|++++..
T Consensus 234 ~----~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~-~-------~~p~~~~~~~yda~~~~~~al~~ag~------ 295 (356)
T 3ipc_A 234 A----SIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAA-G-------FNPEAYTLYSYAAMQAIAGAAKAAGS------ 295 (356)
T ss_dssp H----HHHGGGGTTCEEEESCCGGGCGGGHHHHHHHHHT-T-------CCCCTTHHHHHHHHHHHHHHHHHHTC------
T ss_pred H----HHhhHHhCCEEEEecCCCCCChhHHHHHHHHHHc-C-------CCcchhHHHHHHHHHHHHHHHHHhCC------
Confidence 0 112245778777655443 467789999999886 3 23456789999999999999998621
Q ss_pred ccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeec---CeEEEEEEeeCC
Q 008205 346 FSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIG---TGSRRIGYWSNH 422 (574)
Q Consensus 346 ~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~---~~~~~VG~w~~~ 422 (574)
.++..+.++|++++|+|++|++.||++|++....+.|++++. ++|+.+..|...
T Consensus 296 -----------------------~~~~~~~~~l~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~~~~G~~~~~~~~~~~ 352 (356)
T 3ipc_A 296 -----------------------VEPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQGSHH 352 (356)
T ss_dssp -----------------------CCHHHHHHHHTTCCBCCTTSSBCBCTTSCBCCCCCEEEEEEECTTSSEEEEEC----
T ss_pred -----------------------CCHHHHHHHHHhCCCCCcceeeEECCCCCccCCCeEEEEEEECCCCcEEEEeccccc
Confidence 158999999999999999999999999999888999999995 889999999764
No 19
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=100.00 E-value=8e-39 Score=329.20 Aligned_cols=346 Identities=14% Similarity=0.069 Sum_probs=276.9
Q ss_pred CCCCeEEEEEEeccCC---ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC-CCHHHHHHHHHHhHh-cCcEEEE
Q 008205 28 TIPPVLNIGAVFALNS---TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTN-YSRFLGMVEALTLLE-NETVAII 102 (574)
Q Consensus 28 ~~~~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~-~~~~~a~~~~~~l~~-~~v~aii 102 (574)
...++|+||+++|++. ..|.....|+++|+++||++++++ |++|+++++|++ +++..+.+.+++++. ++|.+||
T Consensus 10 ~~~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~a~~~a~~li~~~~v~aii 88 (419)
T 3h5l_A 10 QSSDPVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGIL-GRPIELVFADTQSKGVDVVIQSAQRLIDRDNASALI 88 (419)
T ss_dssp ---CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTSBT-TBCEEEEEEECTTCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred ccCCCEEEEEeecCCCcccccCHHHHHHHHHHHHHHHhcCCcC-ceEEEEEEccCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 3457899999999984 457889999999999999999986 899999999987 699999999999998 6999999
Q ss_pred cCCChHHHHHHHHhhccCCccEEecccCCCCcC-----C-CCCCceEEecCChHHHHHHHHHHHHHc--------CCeEE
Q 008205 103 GPQFSVIAHLVSHIANEFQVPLLSFAATDPSLS-----S-LQYPFFVRTTQSDLYQMAAIADIVDYF--------GWRNV 168 (574)
Q Consensus 103 Gp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls-----~-~~~~~~~r~~ps~~~~~~ai~~ll~~~--------~W~~v 168 (574)
||.+|..+.++++++..++||+|+++ +.+.+. + ..|+++||+.|++..++.+++++++++ +|++|
T Consensus 89 G~~~s~~~~a~~~~~~~~~ip~i~~~-~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 167 (419)
T 3h5l_A 89 AGYNLENGTALHDVAADAGVIAMHAN-TVAVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNKI 167 (419)
T ss_dssp CSCCSSCSCHHHHHHHHHTCEEEECC-CCHHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSEE
T ss_pred ccccchhHHHhHHHHHHcCCeEEEcC-cchhhhhhhhcCcccCceEEEeCCchHHHHHHHHHHHHHHHhhccccCCCCEE
Confidence 99999999999999999999999964 333222 2 368999999999999999999999886 89999
Q ss_pred EEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC-hHHHHHHHHHHHHCCC
Q 008205 169 IALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNAAKHLRM 247 (574)
Q Consensus 169 ~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-~~~~~~il~~a~~~gm 247 (574)
++||++++||....+.+++.+++.|++|.....++ .+..|+..++++|+..++++|++.+. ++.+..+++++.+.|+
T Consensus 168 ail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~--~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~g~ 245 (419)
T 3h5l_A 168 AIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVA--IPVSDWGPTLAKLRADPPAVIVVTHFYPQDQALFMNQFMTDPT 245 (419)
T ss_dssp EEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECC--SSCSCCHHHHHHHHHSCCSEEEECCCCHHHHHHHHHHHTTSCC
T ss_pred EEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCC--CCCccHHHHHHHHHhcCCCEEEEccccCchHHHHHHHHHHcCC
Confidence 99999999999999999999999999999887776 35578999999999999999999865 5789999999999998
Q ss_pred CCCCeEEEEeCccccccCCCCcCChhhhhhccceEEEEEe-cCCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHH
Q 008205 248 MESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMY-TQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDT 326 (574)
Q Consensus 248 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDa 326 (574)
...|+.++.+... +.. .......+|++..... .+..+..++|.++|+++++. .....+++.+|||
T Consensus 246 ---~~~~~~~~~~~~~-~~~----~~~g~~~~G~~~~~~~~~~~~~~~~~f~~~~~~~~g~------~p~~~~a~~~Yda 311 (419)
T 3h5l_A 246 ---NSLVYLQYGASLA-AFR----DIAGDNSVGVTYATVLGTLQDEMGDAFAKAYKERYGD------LSSTASGCQTYSA 311 (419)
T ss_dssp ---SCEEEECSGGGSH-HHH----HHHGGGGTTCEEEESSCCCSSHHHHHHHHHHHHHHCT------TSCHHHHHHHHHH
T ss_pred ---CceEEecCCCCcH-HHH----HhhhhhcCceEEeecCCCCCCHHHHHHHHHHHHHhCC------CCCcchhHHHHHH
Confidence 3456666544321 110 1122456787665443 34567899999999998852 1123578999999
Q ss_pred HHHHHHHHHHHhhcCCCccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCC-------
Q 008205 327 LWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLI------- 399 (574)
Q Consensus 327 v~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~------- 399 (574)
+++++.|++++..... ...+.++..++++|++++|+|++|+++||++|++.
T Consensus 312 ~~~~~~a~~~a~~~~~----------------------~g~~~~~~~l~~al~~~~~~g~~G~i~f~~~g~~~~~~~~~~ 369 (419)
T 3h5l_A 312 LYAYSIAAALAGGPGA----------------------PYDDVQNKAVADRLRSLIFRGPVGTMRFHADTQSAWSYPTET 369 (419)
T ss_dssp HHHHHHHHHHTTSCCC----------------------TTCHHHHHHHHHHHHHCEEEETTEEEEBCTTTCBBCEETTTC
T ss_pred HHHHHHHHHHhcCCcc----------------------CCCccCHHHHHHHHHhCCcccCceEEEECCCCCccccccCcc
Confidence 9999999997643110 01122588999999999999999999999999843
Q ss_pred -----CCcEEEEEeecCeE
Q 008205 400 -----NPAYEVINVIGTGS 413 (574)
Q Consensus 400 -----~~~~~i~~~~~~~~ 413 (574)
...+.|++++++++
T Consensus 370 ~~~~~~~~~~i~q~q~g~~ 388 (419)
T 3h5l_A 370 NDPSLGMPHIFSQIFDKAE 388 (419)
T ss_dssp SCTTSSEECEEEECCCTTS
T ss_pred CCccccCCceEEEeeCCce
Confidence 22345666665555
No 20
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=8.3e-38 Score=315.78 Aligned_cols=342 Identities=18% Similarity=0.211 Sum_probs=288.0
Q ss_pred CCCCeEEEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEc
Q 008205 28 TIPPVLNIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIG 103 (574)
Q Consensus 28 ~~~~~i~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiG 103 (574)
..+.+++||+++|++ +..|.....|+++|++++|+ + .|+++++++.|+++++..+.+.+++++.+ +|.+|||
T Consensus 12 ~~~~~~~iG~~~plsG~~a~~g~~~~~g~~~a~~~in~---i-~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iiG 87 (366)
T 3td9_A 12 HMRKVVKIAVILPMTGGISAFGRMVWEGIQIAHEEKPT---V-LGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIG 87 (366)
T ss_dssp ----CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHCCE---E-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred hhcceEEEEEEECCcCcchhcCHHHHHHHHHHHHHhhh---c-CCeEEEEEEecCCCCHHHHHHHHHHHhccCCeEEEEc
Confidence 456789999999998 44578899999999999998 4 48999999999999999999999999988 5999999
Q ss_pred CCChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH-HHcCCeEEEEEEE-cCCCCcch
Q 008205 104 PQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV-DYFGWRNVIALYV-DDDHGRNG 181 (574)
Q Consensus 104 p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll-~~~~W~~v~ii~~-~~~~g~~~ 181 (574)
|.++..+.++++++..++||+|++.++++.+++ .+|++||+.|++..++.++++++ +++||+++++||. +++++...
T Consensus 88 ~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~ 166 (366)
T 3td9_A 88 EVASAHSLAIAPIAEENKVPMVTPASTNPLVTQ-GRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDVEQDYSVGL 166 (366)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEESSCCCGGGTT-TCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEETTCHHHHHH
T ss_pred cCCchhHHHHHHHHHhCCCeEEecCCCCccccC-CCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCcHHHHH
Confidence 999999999999999999999999887777654 56999999999999999999988 6689999999987 56788888
Q ss_pred HHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccc
Q 008205 182 IAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLS 261 (574)
Q Consensus 182 ~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~ 261 (574)
.+.+++.+++.|+++.... ++ .+..++...+++++..++++|++.+....+..+++++++.|+.. .|+..+.+.
T Consensus 167 ~~~~~~~~~~~G~~v~~~~-~~--~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~~ 240 (366)
T 3td9_A 167 SNFFINKFTELGGQVKRVF-FR--SGDQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQLGFTG---YILAGDGAD 240 (366)
T ss_dssp HHHHHHHHHHTTCEEEEEE-EC--TTCCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHHHHTTCCS---EEEECGGGC
T ss_pred HHHHHHHHHHCCCEEEEEE-eC--CCCccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHHHHcCCCc---eEEeeCCcC
Confidence 8999999999999998776 65 34567888999999999999999899999999999999999854 377665432
Q ss_pred cccCCCCcCChhhhhhccceEEEEEecCC---ChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHh
Q 008205 262 SILDTDSQLHSEKMDDIQGVLTLRMYTQS---SEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFF 338 (574)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~ 338 (574)
.. ... ........|++....+.+. .+..++|.+.|+++++ ..++.+++.+|||++++++|++++.
T Consensus 241 ~~-~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g-------~~p~~~~~~~yda~~~~~~al~~ag 308 (366)
T 3td9_A 241 AP-ELI----EIGGEAVEGLLFTTHYHPKAASNPVAKKFVEVYKEKYG-------KEPAALNALGYDAYMVLLDAIERAG 308 (366)
T ss_dssp ST-HHH----HHHGGGGTTCEEEESCCGGGCCSHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CH-HHH----HHHhHHhCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHC-------CCCchhHHHHHHHHHHHHHHHHHhC
Confidence 21 000 1223467888887765443 6789999999998885 2357889999999999999999862
Q ss_pred hcCCCccccCCcccccccCCCcccccccccCchHHHHHHHHhcc-cccccccEEEcCCCCCCCCcEEEEEeecCeEEEEE
Q 008205 339 DQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVN-MTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIG 417 (574)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~-f~G~tG~v~Fd~~G~r~~~~~~i~~~~~~~~~~VG 417 (574)
. .++..+.++|++++ |+|++|++.||++|++.. .+.|+++++++++.|+
T Consensus 309 ~-----------------------------~~~~~~~~~l~~~~~~~g~~G~i~f~~~g~~~~-~~~i~~~~~g~~~~v~ 358 (366)
T 3td9_A 309 S-----------------------------FDREKIAEEIRKTRNFNGASGIINIDENGDAIK-SVVVNIVKNGSVDFEA 358 (366)
T ss_dssp S-----------------------------CCHHHHHHHHTTCCSEEETTEEECBCTTSCBCC-CEEEEEEETTEEEEEE
T ss_pred C-----------------------------CCHHHHHHHHHhCCCCcccceeeEECCCCCccC-ceEEEEEECCEEEEEE
Confidence 1 15899999999998 999999999999999774 5999999999999999
Q ss_pred EeeCC
Q 008205 418 YWSNH 422 (574)
Q Consensus 418 ~w~~~ 422 (574)
.|++.
T Consensus 359 ~~~~~ 363 (366)
T 3td9_A 359 VINPD 363 (366)
T ss_dssp EECGG
T ss_pred ecChh
Confidence 99864
No 21
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=100.00 E-value=7.6e-37 Score=307.76 Aligned_cols=344 Identities=16% Similarity=0.150 Sum_probs=288.1
Q ss_pred CCeEEEEEEeccCC---ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhH-hcCcEEEEcCC
Q 008205 30 PPVLNIGAVFALNS---TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLL-ENETVAIIGPQ 105 (574)
Q Consensus 30 ~~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~-~~~v~aiiGp~ 105 (574)
.++|+||+++|++. ..|.....++++|++++|++++++ |+++++++.|+++++..+.+.+++++ +++|.+||||.
T Consensus 2 ~~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~-G~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~ 80 (358)
T 3hut_A 2 SLALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVG-GRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDF 80 (358)
T ss_dssp -CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred CccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCC-CeEEEEEEecCCCCHHHHHHHHHHHhccCCcEEEEcCC
Confidence 36799999999973 356788999999999999999986 89999999999999999999999999 67999999999
Q ss_pred ChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHH
Q 008205 106 FSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAAL 185 (574)
Q Consensus 106 ~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l 185 (574)
++..+.++.+++...+||+|++.++++.+++.. |++||+.|++..++.++++++...||+++++|+.++.++....+.+
T Consensus 81 ~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~ 159 (358)
T 3hut_A 81 SSTVSMAAGSIYGKEGMPQLSPTAAHPDYIKIS-PWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQAF 159 (358)
T ss_dssp SHHHHHHHHHHHHHHTCCEEESSCCCGGGTTSC-TTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHCCCcEEecCCCCcccccCC-CeEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCcHHHHHHHHHH
Confidence 999999999999999999999888777776644 9999999999999999999988889999999999988999999999
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccC
Q 008205 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILD 265 (574)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~ 265 (574)
++.+++.|+++.....++. +..++...++++++.++++|++.++...+..+++++++.|+..+ |+..+.+... .
T Consensus 160 ~~~l~~~g~~v~~~~~~~~--~~~~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~p---~~~~~~~~~~-~ 233 (358)
T 3hut_A 160 RKAFELRGGAVVVNEEVPP--GNRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRARGSALP---VYGSSALYSP-K 233 (358)
T ss_dssp HHHHHHTTCEEEEEEEECT--TCCCCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHHHTTCCCC---EEECGGGCSH-H
T ss_pred HHHHHHcCCEEEEEEecCC--CCccHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHcCCCCc---EEecCcccCH-H
Confidence 9999999999887666653 45677888999988899999999998899999999999998654 7766543221 1
Q ss_pred CCCcCChhhhhhccceEEEEEecC--CChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCC
Q 008205 266 TDSQLHSEKMDDIQGVLTLRMYTQ--SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGN 343 (574)
Q Consensus 266 ~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~ 343 (574)
.. .......+|++...++.+ ..+..++|.+.|+++++ ..++.+++.+|||+++++.|++++...
T Consensus 234 ~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~-------~~p~~~~~~~yda~~~~~~al~~ag~~--- 299 (358)
T 3hut_A 234 FI----DLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLYG-------AIPTLFAAHGYDAVGIMLAAVGRAGPE--- 299 (358)
T ss_dssp HH----HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHHHHCTT---
T ss_pred HH----HHhHHhhCCeEEEeccCCCCCCHHHHHHHHHHHHHHC-------CCCCHHHHHHHHHHHHHHHHHHHhCCC---
Confidence 00 112246788888776554 46789999999998875 245788999999999999999986211
Q ss_pred ccccCCcccccccCCCcccccccccCchHH-HHHHHHhc-ccccccccEEEcCCCCCCCCcEEEEEeecCeEEEEEEeeC
Q 008205 344 ISFSEDSKLSELSRGDMRFSSVSIFNGGKM-LLDNILQV-NMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSN 421 (574)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~-l~~~l~~~-~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~~~~~~VG~w~~ 421 (574)
++.. +.++|+++ .|+|++|++.||++|++....+.|+++++++++.+....+
T Consensus 300 --------------------------~~~~~~~~~l~~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~G~~~~~~~~~~ 353 (358)
T 3hut_A 300 --------------------------VTRESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVREGDFRVIDREGH 353 (358)
T ss_dssp --------------------------CCHHHHHHHHHTCCSEEETTEEEEECTTTCCEEECCEEEEEETTEEEEC-----
T ss_pred --------------------------ChHHHHHHHHHhcCCCcCCceeeEECCCCCcCCCceEEEEEECCEEEEeccccc
Confidence 3677 99999999 9999999999999999756788999999888887766554
No 22
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=100.00 E-value=6.9e-37 Score=309.22 Aligned_cols=336 Identities=16% Similarity=0.170 Sum_probs=280.3
Q ss_pred CCeEEEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-CHHHHHHHHHHhHhc-CcEEEEcC
Q 008205 30 PPVLNIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNY-SRFLGMVEALTLLEN-ETVAIIGP 104 (574)
Q Consensus 30 ~~~i~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~-~~~~a~~~~~~l~~~-~v~aiiGp 104 (574)
.++|+||+++|++ +..|.....|+++|++++| +++ .|++|++++.|+.+ +|..+.+.+.+|+.+ +|.+||||
T Consensus 3 Ad~IkIG~~~plSG~~a~~G~~~~~g~~la~~~~n--ggi-~G~~ielv~~D~~~~~p~~a~~~a~~Li~~d~V~aiiG~ 79 (371)
T 4f06_A 3 ADTIKVGVIGTMSGPYALFGKNYKMGIDAWVAEHG--NKV-AGHTVEFVYRDEVSPNPAQSKALAQELIVKEKVQYLAGL 79 (371)
T ss_dssp -CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHC--SEE-TTEEEEEEEEECCSSCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCcEEEEEEeCCcCchHHhHHHHHHHHHHHHHHhC--CCC-CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 4789999999998 4567889999999999998 555 58999999999976 899999999999976 99999999
Q ss_pred CChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHH
Q 008205 105 QFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAA 184 (574)
Q Consensus 105 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~ 184 (574)
.+|..+.++++++...+||+|++.++++.++.. .||+||+.|++..+..+++++++..+|+++++||++++||....+.
T Consensus 80 ~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~-~~~~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~~g~~~~~~ 158 (371)
T 4f06_A 80 YFTPNAMAVAPLLQEAKVPMVVMNAATSSITEK-SPYIVRTSFTMFQNTVPAAKVAKQKGATKVAIAVSDYGPGIDAETA 158 (371)
T ss_dssp CSHHHHHHHGGGHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred ccccchHHHHHHHHhhcCCccccccccchhccc-CCcceecccchhhhhhhhhhhhhhcCceEEEEEcCCcccchhHHHH
Confidence 999999999999999999999998888877653 4899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC-hHHHHHHHHHHHHCCCCCCCeEEEEeCccccc
Q 008205 185 LGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNAAKHLRMMESGYVWIVTDWLSSI 263 (574)
Q Consensus 185 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~ 263 (574)
+++.+++.|+++.....++ .+..|+..++.+|++.++++|++.+. ...+..+++++.+.|+....+.++........
T Consensus 159 ~~~~~~~~g~~vv~~~~~~--~~~~d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 236 (371)
T 4f06_A 159 FKKTFEAEGGKVVEAVRMP--LSTTDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDNGLKAGGVKLMSTGDVVTE 236 (371)
T ss_dssp HHHHHHHTTCEEEEEEEEC--TTCCCCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHHHHHTTTTTTTCEEEEEGGGGCG
T ss_pred HHHHHHhcCCceEEEEecC--cccccHHHHHHHHHhcCCCEEEEEeccCchhhHHHHHHHHhhhhccCcEEEEecccCCH
Confidence 9999999999999888887 45678999999999999999988764 46788899999999998777777766543221
Q ss_pred cCCCCcCChhhhhhccceEEEEEecC--CChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcC
Q 008205 264 LDTDSQLHSEKMDDIQGVLTLRMYTQ--SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQG 341 (574)
Q Consensus 264 ~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~ 341 (574)
... ........|++....+.+ .++..++|.+.|+++++. ...++.+++.+||+++++++|+++..
T Consensus 237 ~~~-----~~~~~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~-----~~~~~~~a~~~Yda~~~l~~Ai~~~a--- 303 (371)
T 4f06_A 237 PDL-----PNIGEAGLGILSTYHYAVSHDSPENKAFLALLQKGGAK-----LDEVTMTSVAAYDGARLIYKMIEATS--- 303 (371)
T ss_dssp GGH-----HHHCGGGTTCEEEESCCTTCCSHHHHHHHHHHHHTTCC-----GGGCCHHHHHHHHHHHHHHHHHHHTT---
T ss_pred HHH-----HhcccccCceEEeeccccCCCChhHHHHHHHHHHhcCC-----CCCccchHHHHHHHHHHHHHHHHHhc---
Confidence 111 122346677777665543 467899999999987741 12356788899999999999998631
Q ss_pred CCccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEee
Q 008205 342 GNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVI 409 (574)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~ 409 (574)
.+ . ++..++++|++++|+|++|+++||++|+.....+.|.+++
T Consensus 304 g~------------------------~-d~~~v~~al~~~~~~~~~G~i~fd~~~~~~~~~~~i~~v~ 346 (371)
T 4f06_A 304 GK------------------------S-DPDKAIAAVKGMKWVSPRGEVSIDPETRHITQNVYLREVE 346 (371)
T ss_dssp TS------------------------C-CHHHHHHHHTTCEEEETTEEEEECTTTCBEEEEEEEEEEE
T ss_pred CC------------------------C-CHHHHHHHHhCCCeeCCcEEEEEcCCCCcccCCEEEEEEE
Confidence 10 1 5889999999999999999999998887665667777776
No 23
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=100.00 E-value=8.6e-37 Score=305.89 Aligned_cols=339 Identities=15% Similarity=0.144 Sum_probs=280.7
Q ss_pred CeEEEEEEeccCCc---cchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCCh
Q 008205 31 PVLNIGAVFALNST---IGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFS 107 (574)
Q Consensus 31 ~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 107 (574)
++|+||+++|.+.. .|.....++++|+++||+++++ .|++|++++.|+++++..+.+.++++++++|.+||||.++
T Consensus 1 ~~i~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi-~G~~l~l~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~s 79 (346)
T 1usg_A 1 DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGI-KGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCS 79 (346)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTB-TTBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEECCSSH
T ss_pred CcEEEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEcCCCc
Confidence 36999999999732 4677899999999999999988 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH-HHcCCeEEEEEEEcCCCCcchHHHHH
Q 008205 108 VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV-DYFGWRNVIALYVDDDHGRNGIAALG 186 (574)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll-~~~~W~~v~ii~~~~~~g~~~~~~l~ 186 (574)
..+.++.+++...++|+|++.++++.+++..++++||+.|++..++.++++++ +++||+++++|+.++.++....+.++
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~~~~~~~~~~~~~~~ 159 (346)
T 1usg_A 80 SSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQ 159 (346)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEeeCCCChHHhcCCCCcEEeccCChHHHHHHHHHHHHHhcCCCeEEEEECCCchHHHHHHHHH
Confidence 88888899999999999998877777766557999999999999999999987 56899999999988888888889999
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCC
Q 008205 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDT 266 (574)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~ 266 (574)
+.+++.|+++.....++. +..++...++++++.++++|++.+....+..++++++++|+..+ |+.++.+... ..
T Consensus 160 ~~l~~~g~~v~~~~~~~~--~~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~-~~ 233 (346)
T 1usg_A 160 DGLKAANANVVFFDGITA--GEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKTQ---FMGPEGVGNA-SL 233 (346)
T ss_dssp HHHHHTTCCEEEEEECCT--TCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE---EEECGGGCCT-TH
T ss_pred HHHHHcCCEEEEEeccCC--CCcCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHHHHHcCCCCe---EEecCCCCcH-HH
Confidence 999999999876655552 34567788899988899999998888889999999999998654 7776544321 10
Q ss_pred CCcCChhhhhhccceEEEEEec-CCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 008205 267 DSQLHSEKMDDIQGVLTLRMYT-QSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNIS 345 (574)
Q Consensus 267 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~ 345 (574)
. .......+|++...++. ...+..++|.++|++.++ ..++.+++.+|||++++++|++++..
T Consensus 234 ~----~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~-------~~~~~~~~~~yda~~~~~~al~~~g~------ 296 (346)
T 1usg_A 234 S----NIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKK-------DPSGPYVWITYAAVQSLATALERTGS------ 296 (346)
T ss_dssp H----HHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTTC-------CCCCHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred H----HHhhHhhCCeEEecCCCCCCCHHHHHHHHHHHHHhC-------CCCchhHHHHHHHHHHHHHHHHHhCC------
Confidence 0 11224567887776542 346778999999988764 23567889999999999999998621
Q ss_pred ccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEee-cCeEEEE
Q 008205 346 FSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVI-GTGSRRI 416 (574)
Q Consensus 346 ~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~-~~~~~~V 416 (574)
. ++..|+++|++.+|+|++|++.||++|++....|.|++++ ++.++.+
T Consensus 297 ----------------------~-~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~~~~i~~~~~~G~~~~~ 345 (346)
T 1usg_A 297 ----------------------D-EPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTKA 345 (346)
T ss_dssp ----------------------C-CHHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSCEEEC
T ss_pred ----------------------C-CHHHHHHHHHhCCCccceeeeEECCCCCccCCceEEEEEecCCEEEec
Confidence 1 4889999999999999999999999999877889999998 6666544
No 24
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=100.00 E-value=5.2e-37 Score=312.89 Aligned_cols=357 Identities=11% Similarity=0.009 Sum_probs=290.8
Q ss_pred CCCeEEEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcC
Q 008205 29 IPPVLNIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGP 104 (574)
Q Consensus 29 ~~~~i~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp 104 (574)
..++|+||+++|++ +..|.....++++|++++|++++++ |+++++++.|+++++..+.+.+++++.+ +|.+|||
T Consensus 4 a~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~~~~~~~li~~~~V~~iig- 81 (392)
T 3lkb_A 4 GQQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVP-GVVFNCVVRDDQYNNANTQRFFEEAVDRFKIPVFLS- 81 (392)
T ss_dssp CCEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSST-TEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSCEEE-
T ss_pred cCCceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcC-CeEeEEEEecCCCCHHHHHHHHHHHHhhcCcEEEEe-
Confidence 35789999999997 3457788999999999999999986 8999999999999999999999999997 9999999
Q ss_pred CChHHHHHHHHhhccCCccEEecccCCCCcCC-CCCCceEEecCChHHHHHHHHHHHHH-cCCeEEEEEEEcCCCCcchH
Q 008205 105 QFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDY-FGWRNVIALYVDDDHGRNGI 182 (574)
Q Consensus 105 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~ll~~-~~W~~v~ii~~~~~~g~~~~ 182 (574)
.++..+.++++++...+||+|++.++.+ +.+ ..++++||+.|++..++.++++++.. +||+++++|+.++++|....
T Consensus 82 ~~s~~~~~~~~~~~~~~iP~i~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~g~~~~ 160 (392)
T 3lkb_A 82 YATGANLQLKPLIQELRIPTIPASMHIE-LIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFGRAPV 160 (392)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEESCCCGG-GGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEECSSHHHHTTH
T ss_pred CCcHHHHHHHHHHHhCCceEEecccChh-hccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEeCCchhhhHH
Confidence 6788888899999999999999755443 444 46799999999999999999998766 69999999999888999999
Q ss_pred HHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCcccc
Q 008205 183 AALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSS 262 (574)
Q Consensus 183 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~ 262 (574)
+.+++.+++.|+++.....++ ....++...++++++.++++|++.+....+..++++++++|+..+ |+.++++..
T Consensus 161 ~~~~~~l~~~G~~v~~~~~~~--~~~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~ 235 (392)
T 3lkb_A 161 EDARKAARELGLQIVDVQEVG--SGNLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLGLKMR---HLGAHYTGG 235 (392)
T ss_dssp HHHHHHHHHHTCEEEEEEECC--TTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE---EEECGGGCS
T ss_pred HHHHHHHHHcCCeEEEEEeeC--CCCcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCce---EEEecCccc
Confidence 999999999999988776665 345678889999999999999999999999999999999998543 666544322
Q ss_pred ccCCCCcCChhhhhhccceEEEEEecC--CChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhc
Q 008205 263 ILDTDSQLHSEKMDDIQGVLTLRMYTQ--SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQ 340 (574)
Q Consensus 263 ~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~ 340 (574)
. ... .......+|++....+.+ ..+..++|.++|+++++..+. ...+..++.+|||++++++|++++...
T Consensus 236 ~-~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~p~---~~~~~~~~~~yda~~~~~~al~~ag~~ 307 (392)
T 3lkb_A 236 P-DLI----ALAGDAAEGFLWATSFYMAHEDTPGIRLQKEIGRKYGRPEN---FIESVNYTNGMLAAAIAVEAIRRAQER 307 (392)
T ss_dssp H-HHH----HHHGGGGTTCEEEESBCCTTSCCHHHHHHHHHHHHTTCCHH---HHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHH----HhhhhhhcCeEEEEeecCCCCCchhHHHHHHHHHHhCCCcc---cccchhHHHHHHHHHHHHHHHHHhhcc
Confidence 1 110 112245788887765533 245678999999988752100 000234788999999999999997542
Q ss_pred CCCccccCCcccccccCCCcccccccccCchHHHHHHHHhcc----cc-------cccccEEEcCCCCCCCCcEEEEEee
Q 008205 341 GGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVN----MT-------GVTGPIKFTSDRDLINPAYEVINVI 409 (574)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~----f~-------G~tG~v~Fd~~G~r~~~~~~i~~~~ 409 (574)
+. +.++..++++|++++ |+ |++|++.|+++|++....+.|++++
T Consensus 308 ~~-------------------------~~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~~~~~~~~i~~~~ 362 (392)
T 3lkb_A 308 FK-------------------------RITNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAEGLRILEAK 362 (392)
T ss_dssp HS-------------------------SCCHHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCEEECCBEEEEEE
T ss_pred CC-------------------------CCCHHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCcCCcccEEEEEEe
Confidence 11 115899999999997 98 9999999999888767789999999
Q ss_pred cCeEEEEEEeeCCCCCc
Q 008205 410 GTGSRRIGYWSNHSGLS 426 (574)
Q Consensus 410 ~~~~~~VG~w~~~~gl~ 426 (574)
+++++.|+.|....++.
T Consensus 363 ~g~~~~v~~w~~~~~~~ 379 (392)
T 3lkb_A 363 GGRFVPVTEPFTSALFR 379 (392)
T ss_dssp TTEEEECSCCBCCHHHH
T ss_pred CCEEEEeccccchhHHH
Confidence 99999999998766543
No 25
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=100.00 E-value=4.8e-36 Score=303.96 Aligned_cols=345 Identities=14% Similarity=0.179 Sum_probs=289.4
Q ss_pred CCCCeEEEEEEeccCC---ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEc
Q 008205 28 TIPPVLNIGAVFALNS---TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIG 103 (574)
Q Consensus 28 ~~~~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiG 103 (574)
+..++|+||+++|++. ..|.....++++|++++| ++ ++|+++++++.|+++++..+.+.+.+++.+ +|.+|||
T Consensus 12 a~~~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~n--g~-~~g~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig 88 (375)
T 4evq_A 12 AQAGALKVGLLLPYSGTYAPLGEAITRGLELYVQSQG--GK-LGGRSISFVKVDDESAPPKATELTTKLIQSEKADVLIG 88 (375)
T ss_dssp ---CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTT--TE-ETTEEEEEEEEECTTCHHHHHHHHHCCCCCSCCSEEEE
T ss_pred hhCCCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhC--CC-cCCEEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEc
Confidence 3457899999999973 456788999999999998 43 478999999999999999999999999986 9999999
Q ss_pred CCChHHHHHHHHhhccCCccEEecccCCCCcCCC-CCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchH
Q 008205 104 PQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSL-QYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGI 182 (574)
Q Consensus 104 p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~-~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~ 182 (574)
|.++..+.++.+++...+||+|++.++++.+++. .+|++||+.|++..++.++++++.++||+++++|+.++.++....
T Consensus 89 ~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~ 168 (375)
T 4evq_A 89 TVHSGVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVTVTWKYAAGEEMV 168 (375)
T ss_dssp CSSHHHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHH
T ss_pred CCccHHHHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEEEEecCchHHHHHH
Confidence 9999999999999999999999998888777764 489999999999999999999999999999999999988899999
Q ss_pred HHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCcccc
Q 008205 183 AALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSS 262 (574)
Q Consensus 183 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~ 262 (574)
+.+++.+++.|+++.....++. +..++...++++++.++++|++.+....+..++++++++|+..+ |+.++ +..
T Consensus 169 ~~~~~~l~~~G~~v~~~~~~~~--~~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~~g~~vp---~~~~~-~~~ 242 (375)
T 4evq_A 169 SGFKKSFTAGKGEVVKDITIAF--PDVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAANLGIP---LWGPG-FLT 242 (375)
T ss_dssp HHHHHHHHHTTCEEEEEEEECT--TCCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHTTCCCC---EEEEG-GGT
T ss_pred HHHHHHHHHcCCeEEEEEecCC--CCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCce---EEecC-cCC
Confidence 9999999999999877666653 44577888999988899999998899999999999999998644 55554 211
Q ss_pred ccCCCCcCChhhhhhccceEEEEEecC--CChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhc
Q 008205 263 ILDTDSQLHSEKMDDIQGVLTLRMYTQ--SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQ 340 (574)
Q Consensus 263 ~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~ 340 (574)
. ... .......+|++...++.+ ..+..++|.++|+++++ ..++.+++.+|||++++++|++++...
T Consensus 243 ~-~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~-------~~p~~~~~~~yda~~~~~~al~~~g~~ 310 (375)
T 4evq_A 243 D-GVE----AAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAYK-------IPPDVFAVQGWDAGQLLDAGVKAVGGD 310 (375)
T ss_dssp T-TTH----HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred H-HHH----HhhhhhcCCeEEeeccCCCCCCHHHHHHHHHHHHHHC-------CCCcHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1 110 222356788888766544 45789999999998875 245678899999999999999985211
Q ss_pred CCCccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeecCeEEEEEEee
Q 008205 341 GGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWS 420 (574)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~~~~~~VG~w~ 420 (574)
+.++..|.++|++++|+|++|++.||++|++. ..+.|+++++++++.|+.+-
T Consensus 311 ---------------------------~~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~~~~ 362 (375)
T 4evq_A 311 ---------------------------VAKRKELNAAMAAASFASPRGPFKLSAAHNPV-QNFYLRELKGGKSVNLGLAA 362 (375)
T ss_dssp ---------------------------TTCHHHHHHHHHTCEEEETTEEEEBCTTSCBC-CCEEEEEEETTEEEEEEEEE
T ss_pred ---------------------------CCCHHHHHHHHhcCCcccCCcceeECCCCCcc-ccEEEEEEECCCcEEeeehh
Confidence 12589999999999999999999999999875 68999999999999999886
Q ss_pred C
Q 008205 421 N 421 (574)
Q Consensus 421 ~ 421 (574)
+
T Consensus 363 ~ 363 (375)
T 4evq_A 363 P 363 (375)
T ss_dssp C
T ss_pred h
Confidence 5
No 26
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=100.00 E-value=5.3e-36 Score=303.55 Aligned_cols=333 Identities=15% Similarity=0.147 Sum_probs=281.7
Q ss_pred CCeEEEEEEeccCC---cc-chhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHh-cCcEEEEcC
Q 008205 30 PPVLNIGAVFALNS---TI-GKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLE-NETVAIIGP 104 (574)
Q Consensus 30 ~~~i~IG~l~~~~~---~~-g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~-~~v~aiiGp 104 (574)
.++|+||+++|++. .. |.....++++|++++ ++++ .|+++++++.|+++++..+.+.+++++. ++|.+||||
T Consensus 2 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~--~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~ 78 (375)
T 3i09_A 2 ADSVKIGFITDMSGLYADIDGQGGLEAIKMAVADF--GGKV-NGKPIEVVYADHQNKADIAASKAREWMDRGGLDLLVGG 78 (375)
T ss_dssp CSSEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHH--TSEE-TTEEEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred CCCeEEEEEeCCCcccccccCHHHHHHHHHHHHHh--CCCC-CCeEEEEEEecCCCCHHHHHHHHHHHHhhCCCEEEECC
Confidence 36799999999973 33 778999999999999 4556 4899999999999999999999999998 799999999
Q ss_pred CChHHHHHHHHhhccCCccEEecccCCCCcCC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHH
Q 008205 105 QFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIA 183 (574)
Q Consensus 105 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~ 183 (574)
.+|..+.++++++..++||+|++.++++.+++ ..+|++||+.|++..++.++++++.++||+++++|++++++|....+
T Consensus 79 ~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~ 158 (375)
T 3i09_A 79 TNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTADYAFGKALEK 158 (375)
T ss_dssp SCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEEEEecccHHHHHHHH
Confidence 99999999999999999999999888887876 46899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccc
Q 008205 184 ALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSI 263 (574)
Q Consensus 184 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~ 263 (574)
.+++.+++.|+++.....++. +..++...++++++.++++|++.+....+..++++++++|+..+. .++..+.+...
T Consensus 159 ~~~~~~~~~G~~v~~~~~~~~--~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~-~i~g~~~~~~~ 235 (375)
T 3i09_A 159 NTADVVKANGGKVLGEVRHPL--SASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEFGITKTM-KLAALLMFIND 235 (375)
T ss_dssp HHHHHHHHTTCEEEEEEEECT--TCSCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHHTTGGGTC-EEEESSCCHHH
T ss_pred HHHHHHHHcCCEEeeeeeCCC--CCccHHHHHHHHHhCCCCEEEEecCchhHHHHHHHHHHcCCCcCc-eEEecccchhh
Confidence 999999999999987776663 456788999999999999999999998999999999999998766 44443333221
Q ss_pred cCCCCcCChhh-hhhccceEEEEEecCC-ChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcC
Q 008205 264 LDTDSQLHSEK-MDDIQGVLTLRMYTQS-SEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQG 341 (574)
Q Consensus 264 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~ 341 (574)
+ ... ....+|++....+.+. .+..++|.++|+++++ ..++.+++.+|||++++++|++++..
T Consensus 236 ~-------~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g-------~~p~~~a~~~Yda~~~~~~Al~~ag~-- 299 (375)
T 3i09_A 236 V-------HALGLETTQGLVLTDSWYWNRDQASRQWAQRYFAKMK-------KMPSSLQAADYSSVTTYLKAVQAAGS-- 299 (375)
T ss_dssp H-------HHHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHHHHTS--
T ss_pred H-------hhhChhhhCCeeeeeeecCCCCHHHHHHHHHHHHHHC-------CCCcHHHHHHHHHHHHHHHHHHHhCC--
Confidence 1 111 2457788776655443 5789999999998885 24577889999999999999998621
Q ss_pred CCccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeecCe
Q 008205 342 GNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTG 412 (574)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~~~ 412 (574)
.++..|.++|++++|+|++|.+.|+++|++. ..+.|+++++++
T Consensus 300 ---------------------------~~~~~l~~aL~~~~~~~~~G~~~f~~~g~~~-~~~~i~~v~~~~ 342 (375)
T 3i09_A 300 ---------------------------TDSDKVMAQLKKMKIDDFYAKGYIRTDGSMI-HDMYLMEVKKPS 342 (375)
T ss_dssp ---------------------------CCHHHHHHHHTTSCEESSSCEEEECTTSBEE-CCEEEEEECCGG
T ss_pred ---------------------------CCHHHHHHHHhCCCccCCCCceEECCCCCee-eeeEEEEEeccc
Confidence 1589999999999999999999999999876 567888887543
No 27
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=100.00 E-value=6.8e-36 Score=300.15 Aligned_cols=338 Identities=16% Similarity=0.203 Sum_probs=270.3
Q ss_pred CCCCeEEEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEc
Q 008205 28 TIPPVLNIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIG 103 (574)
Q Consensus 28 ~~~~~i~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiG 103 (574)
..+++|+||+++|++ +..|.....|+++|+++||+.++++ |++|+++++|++++|..+++.+.+|+.+ ++.+|+|
T Consensus 3 ~~~~tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~-Gr~ielv~~D~~~~p~~a~~~a~~li~~~~v~~i~g 81 (353)
T 4gnr_A 3 VEEKTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGID-GKQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVVG 81 (353)
T ss_dssp ---CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBT-TBEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEC
T ss_pred CCCCeEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEecCCCCHHHHHHHHHHHHhhCCceEEec
Confidence 457899999999998 4567889999999999999999986 8999999999999999999999999987 7899999
Q ss_pred CCChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcC-CeEEEEEEEcC-CCCcch
Q 008205 104 PQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFG-WRNVIALYVDD-DHGRNG 181 (574)
Q Consensus 104 p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~-W~~v~ii~~~~-~~g~~~ 181 (574)
|.+|..+.++++++..++||+|++.++++.++. .++|+||+.|++..+..++++++...+ +++++++++++ +||...
T Consensus 82 ~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~ 160 (353)
T 4gnr_A 82 PATSGATAAAVANATKAGVPLISPSATQDGLTK-GQDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTDNASDYAKGI 160 (353)
T ss_dssp CCSHHHHHHHHHHHHHTTCCEEESSCCCTTTTT-TCTTEEECSCCHHHHHHHHHHHHHHTSCCSEEEEEEETTCHHHHHH
T ss_pred cccCcccceehhhhhccCcceEeeccccccccc-CCccccccCCCcHHHHHHHHHHHHHhcCCcEEEEEEcCchHHHHHH
Confidence 999999999999999999999999888887764 458999999999999999999987654 45555555543 466655
Q ss_pred HHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccc
Q 008205 182 IAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLS 261 (574)
Q Consensus 182 ~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~ 261 (574)
.+.+.+ ..|.++.....++ .+..|+..++.+++..++++|++.+...++..++++++++|+..+ |+..+.+.
T Consensus 161 ~~~~~~---~~g~~vv~~~~~~--~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~ 232 (353)
T 4gnr_A 161 AKSFRE---SYKGEIVADETFV--AGDTDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDKP---IVGGDGFN 232 (353)
T ss_dssp HHHHHH---HCCSEEEEEEEEC--TTCCCCHHHHHHHHTSCCSEEECCSCHHHHHHHHHHHHHTTCCSC---EEECGGGC
T ss_pred HHHHHH---HcCCEEEEEEeeC--CCCCCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCCCc---EEEecccc
Confidence 555543 4578888877777 456789999999999999999999999999999999999998665 66554433
Q ss_pred cccCCCCcCChhhhhhccceEEEEEecC---CChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHh
Q 008205 262 SILDTDSQLHSEKMDDIQGVLTLRMYTQ---SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFF 338 (574)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~ 338 (574)
...... ........|.+....+.+ .++..++|.+.|+++++ ..++.+++.+|||++++++|+++..
T Consensus 233 ~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g-------~~p~~~a~~~Yda~~~la~Ai~~a~ 301 (353)
T 4gnr_A 233 GEEFVQ----QATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKYN-------EEPSTFAALAYDSVHLVANAAKGAK 301 (353)
T ss_dssp SHHHHH----HHCTTTCCSEEEEESCCSSSSCCHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred cchhhh----hhhhhhhcCccccccccCCCCCCHHHHHHHHHHHHHhC-------CCCChhHHHHHHHHHHHHHHHhcCC
Confidence 210000 011234566666654433 35778999999999886 3457789999999999999997420
Q ss_pred hcCCCccccCCcccccccCCCcccccccccCchHHHHHHHHhc-ccccccccEEEcCCCCCCCCcEEEEEeecCeEEEEE
Q 008205 339 DQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQV-NMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIG 417 (574)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~-~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~~~~~~VG 417 (574)
++..+.++|+++ .|+|++|+++||++|++. ..+.|+++++++++.+.
T Consensus 302 -------------------------------~~~~v~~aL~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~v~~Gk~~~~~ 349 (353)
T 4gnr_A 302 -------------------------------NSGEIKDNLAXTKDFEGVTGQTSFDADHNTV-KTAYMMTMNNGKVEAAE 349 (353)
T ss_dssp -------------------------------SHHHHHHHHHTCCCEEETTEEECCCTTSCCC-CCEEEEEEETTEEEEEE
T ss_pred -------------------------------CHHHHHHHHHhcCCCccCceeEEECCCcCCc-CCeEEEEEECCEEEEEE
Confidence 377899999988 599999999999999875 56779999888776664
Q ss_pred E
Q 008205 418 Y 418 (574)
Q Consensus 418 ~ 418 (574)
.
T Consensus 350 ~ 350 (353)
T 4gnr_A 350 V 350 (353)
T ss_dssp E
T ss_pred E
Confidence 3
No 28
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=100.00 E-value=6.3e-36 Score=304.68 Aligned_cols=350 Identities=14% Similarity=0.103 Sum_probs=284.3
Q ss_pred CCeEEEEEEeccCC---ccchhHHHHHHHHHHHHhcCCCCC-CCc--EEEEEEecCCCCHHHHHHHHHHhH-hcCcEEEE
Q 008205 30 PPVLNIGAVFALNS---TIGKVAKVAIEAAVEDVNSNPAIL-GGT--KLKLTVHDTNYSRFLGMVEALTLL-ENETVAII 102 (574)
Q Consensus 30 ~~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~~l-~g~--~l~~~~~d~~~~~~~a~~~~~~l~-~~~v~aii 102 (574)
.++|+||+++|++. ..|.....++++|+++||++++++ +|+ +|++++.|+++++..+.+.+++++ +++|.+||
T Consensus 2 ~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a~~~~~~li~~~~V~~ii 81 (391)
T 3eaf_A 2 SLTINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAII 81 (391)
T ss_dssp CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSEEE
T ss_pred CccEEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEE
Confidence 36899999999983 457788999999999999999885 689 999999999999999999999999 67999999
Q ss_pred cCCChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHH-cCCeEEEEEEE-cCCCCcc
Q 008205 103 GPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDY-FGWRNVIALYV-DDDHGRN 180 (574)
Q Consensus 103 Gp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~-~~W~~v~ii~~-~~~~g~~ 180 (574)
| .++..+.++++++...+||+|++.++.+ +. .+|++||+.|++..++.++++++.+ +||++|++|+. ++++|..
T Consensus 82 G-~~s~~~~a~~~~~~~~~iP~i~~~~~~~-~~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~g~~ 157 (391)
T 3eaf_A 82 G-WGTADTEKLSDQVDTDKITYISASYSAK-LL--VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAYDSKVAYSRS 157 (391)
T ss_dssp E-CCHHHHHHHHHHHHHHTCEEEESCCCGG-GT--TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEECTTCHHHHT
T ss_pred E-cCcHHHHHHHHHHhhcCCeEEecccchh-hc--CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEEecCChhHHH
Confidence 9 6888888999999999999999765543 33 5799999999999999999998866 79999999999 8889999
Q ss_pred hHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHH--hhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeC
Q 008205 181 GIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLT--VSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD 258 (574)
Q Consensus 181 ~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~--ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~ 258 (574)
..+.+++.+++.|+++.....++ .+..++...+.+ +++.++++|++.++...+..++++++++|+..+ |+.++
T Consensus 158 ~~~~~~~~l~~~G~~v~~~~~~~--~~~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~ 232 (391)
T 3eaf_A 158 PIGAIKKAAPSLGLQVVGDYDLP--LRATEADAERIAREMLAADPDYVWCGNTISSCSLLGRAMAKVGLDAF---LLTNV 232 (391)
T ss_dssp THHHHHHHTGGGTEEEEEEEECC--TTCCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHHHHHTCCCE---EEECG
T ss_pred HHHHHHHHHHHcCCceeeeeccC--CCCcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHCCCCce---EEEec
Confidence 99999999999999998877666 355689999999 999999999999999999999999999998653 55544
Q ss_pred ccccccCCCCcCChhhhhhccc-eEEEEEec-----CCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHH
Q 008205 259 WLSSILDTDSQLHSEKMDDIQG-VLTLRMYT-----QSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAH 332 (574)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~-----~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~ 332 (574)
+.... ... .......+| ++....+. ...+. .+|.++|+++++. .....+.+++.+|||++++++
T Consensus 233 ~~~~~-~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~----~~p~~~~~~~~~yda~~~l~~ 302 (391)
T 3eaf_A 233 WGFDE-RSP----QLIGEGGYGKVFGISPFIYPMFGQDVEG-IQTIFEAARMNGV----SEDQINLRVVQGFVNVWLLIK 302 (391)
T ss_dssp GGCST-THH----HHHCGGGTTSEEEEESBCCGGGCTTCHH-HHHHHHHHHHTTC----CGGGCCHHHHHHHHHHHHHHH
T ss_pred cCCCH-HHH----HhhhhhccCcEEEEEEecCcccCCCCch-hHHHHHHHHHhCC----CCcccccHHHHHHHHHHHHHH
Confidence 32211 110 112245788 76666554 23444 6799999988741 001124788999999999999
Q ss_pred HHHHHhhcCCCccccCCcccccccCCCcccccccccCchHHHHHHHHhcccc--cccc-cEEEcCCCCCCCCcEEEEEe-
Q 008205 333 AIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMT--GVTG-PIKFTSDRDLINPAYEVINV- 408 (574)
Q Consensus 333 Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~--G~tG-~v~Fd~~G~r~~~~~~i~~~- 408 (574)
|++++...+. ... ++..+.++|++..|+ |++| ++.||++|++....+.|+++
T Consensus 303 Al~~a~~~g~-----------------------~~~-~~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~~~~~i~~~~ 358 (391)
T 3eaf_A 303 AIESVTSQDL-----------------------QER-GGEALKEALEANTFDLGGITADTIDYEPGFHLAYRKVFIIKLG 358 (391)
T ss_dssp HHTTSCHHHH-----------------------HHH-THHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCCCEEEEEEC
T ss_pred HHHHHHhcCC-----------------------CCC-CHHHHHHHHHhCCCCCCCccccceeeCCCCCCcceEEEEEEEe
Confidence 9987622110 001 588999999998898 9999 99999877677788999999
Q ss_pred ecCeEEEEEEeeCC
Q 008205 409 IGTGSRRIGYWSNH 422 (574)
Q Consensus 409 ~~~~~~~VG~w~~~ 422 (574)
++++++.|+.|...
T Consensus 359 ~~G~~~~v~~~~~~ 372 (391)
T 3eaf_A 359 ENGELQLMGKFEAP 372 (391)
T ss_dssp TTSSEEEEEEECCC
T ss_pred cCCEEEEeeeecCc
Confidence 78889999999753
No 29
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=100.00 E-value=3.1e-36 Score=305.68 Aligned_cols=334 Identities=12% Similarity=0.086 Sum_probs=279.3
Q ss_pred CCeEEEEEEeccC---Ccc-chhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHh-cCcEEEEcC
Q 008205 30 PPVLNIGAVFALN---STI-GKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLE-NETVAIIGP 104 (574)
Q Consensus 30 ~~~i~IG~l~~~~---~~~-g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~-~~v~aiiGp 104 (574)
.++|+||+++|++ +.. |.....++++|++++ ++++ .|++++++++|+++++..+.+.+++++. ++|.+||||
T Consensus 4 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i--~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~ 80 (379)
T 3n0w_A 4 TGQVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDV--GGKA-LGQPVKLVSADYQMKTDVALSIAREWFDRDGVDAIFDV 80 (379)
T ss_dssp --CCEEEEEECSSSTTTTTSHHHHHHHHHHHHHHT--TTEE-TTEECEEEEEECTTCHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred CCcEEEEEEeCCccccccccCHHHHHHHHHHHHHh--cCCC-CCeEEEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEcC
Confidence 4679999999997 334 778999999999999 3556 4799999999999999999999999998 799999999
Q ss_pred CChHHHHHHHHhhccCCccEEecccCCCCcCC-CCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHH
Q 008205 105 QFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIA 183 (574)
Q Consensus 105 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~ 183 (574)
.+|..+.++++++..++||+|++.++++.+++ ..+||+||+.|++..++.++++++.++||+++++|++++++|....+
T Consensus 81 ~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~ 160 (379)
T 3n0w_A 81 VNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLMLPDAAYGDLMNA 160 (379)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEEecccchhHHHHH
Confidence 99999999999999999999999888888876 35899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccc
Q 008205 184 ALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSI 263 (574)
Q Consensus 184 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~ 263 (574)
.+++.+++.|+++.....++. +..|+...++++++.++++|++.+....+..++++++++|+..+.+ ++.+..+...
T Consensus 161 ~~~~~~~~~G~~v~~~~~~~~--~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~ 237 (379)
T 3n0w_A 161 AIRRELTAGGGQIVGSVRFPF--ETQDFSSYLLQAKASGAQLIVSTSGGAANINIMKQAREFGLPSKTQ-KVGGMIDILT 237 (379)
T ss_dssp HHHHHHHHHTCEEEEEEEECT--TCCCCHHHHHHHHHHTCSEEEECCCHHHHHHHHHHHHHTTCSCSSC-EEECCBCCHH
T ss_pred HHHHHHHHcCCEEEEEEeCCC--CCCCHHHHHHHHHHCCCCEEEEecccchHHHHHHHHHHcCCCCCCc-EEEecccchH
Confidence 999999999999988776663 4567889999999999999999999899999999999999976543 3443322211
Q ss_pred cCCCCcCChhh-hhhccceEEEEEecCC-ChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcC
Q 008205 264 LDTDSQLHSEK-MDDIQGVLTLRMYTQS-SEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQG 341 (574)
Q Consensus 264 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~ 341 (574)
+. ... ....+|++....+.+. .+..++|.++|+++++ ..++.+++.+|||++++++|++++..
T Consensus 238 -~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g-------~~p~~~~~~~Yda~~~~~~Al~~ag~-- 302 (379)
T 3n0w_A 238 -DV-----KSAGLRVMQGQEYATSFYWNMDDRTRAFAKRFYAKMG-------KMPTNNQAGGYSAALQYLKAVNAIGS-- 302 (379)
T ss_dssp -HH-----HHHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred -HH-----HhhCHHhhCCeEEEeeecCCCCHHHHHHHHHHHHHHC-------CCCChHHHHHHHHHHHHHHHHHHhCC--
Confidence 11 111 2457788776655443 5789999999998885 24577899999999999999998621
Q ss_pred CCccccCCcccccccCCCcccccccccCchHHHHHHHHhccccccccc-EEEcCCCCCCCCcEEEEEeecCe
Q 008205 342 GNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGP-IKFTSDRDLINPAYEVINVIGTG 412 (574)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~-v~Fd~~G~r~~~~~~i~~~~~~~ 412 (574)
.++..|.++|++++|+|..|. +.|+++|++. ..+.|+++++++
T Consensus 303 ---------------------------~~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~~-~~~~i~~~~~~~ 346 (379)
T 3n0w_A 303 ---------------------------KDPQKVFAYLKTIKFDDAVTRHGTLRPGGRLV-RDMYLVRAKKPE 346 (379)
T ss_dssp ---------------------------CCHHHHHHHHTTCCBCSSSCCSBEECTTSBEE-CCEEEEEECCGG
T ss_pred ---------------------------CCHHHHHHHHhcCCccccCCCceeECCCCCcc-cceEEEEEEchh
Confidence 158999999999999999986 9999999865 678898887643
No 30
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=100.00 E-value=1.1e-35 Score=300.54 Aligned_cols=346 Identities=16% Similarity=0.184 Sum_probs=285.9
Q ss_pred CCCeEEEEEEeccCC---ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHh-cCcEEEEcC
Q 008205 29 IPPVLNIGAVFALNS---TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLE-NETVAIIGP 104 (574)
Q Consensus 29 ~~~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~-~~v~aiiGp 104 (574)
..++|+||+++|++. ..|.....++++|++++|. ++ +|++|++++.|+++++..+.+.+++++. ++|.+||||
T Consensus 3 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~--~i-~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~~iiG~ 79 (368)
T 4eyg_A 3 AEDTFKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGD--TV-AGKKIEVILKDDAAIPDNTKRLAQELIVNDKVNVIAGF 79 (368)
T ss_dssp -CCEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCS--EE-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCcEEEEEEeCCcCcchhccHHHHHHHHHHHHHcCC--CC-CCeEEEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEECC
Confidence 357899999999973 3477889999999999974 23 5899999999999999999999999998 799999999
Q ss_pred CChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHH
Q 008205 105 QFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAA 184 (574)
Q Consensus 105 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~ 184 (574)
.++..+.++++++...+||+|++.++++.+++. +|++||+.|++..++.++++++.++||+++++|+.++.+|....+.
T Consensus 80 ~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~g~~~~~~ 158 (368)
T 4eyg_A 80 GITPAALAAAPLATQAKVPEIVMAAGTSIITER-SPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSDYAPGNDALAF 158 (368)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCCceEEeccCCChhhccC-CCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCchHhHHHHHH
Confidence 999999999999999999999988777767655 7999999999999999999999999999999999988889888999
Q ss_pred HHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCcccccc
Q 008205 185 LGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSIL 264 (574)
Q Consensus 185 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~ 264 (574)
+++.+++.|+++.....++. +..++...++++++.++++|++.+....+..++++++++|+..+++.|+.++++....
T Consensus 159 ~~~~l~~~g~~v~~~~~~~~--~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v~~~~~~~~~~~~ 236 (368)
T 4eyg_A 159 FKERFTAGGGEIVEEIKVPL--ANPDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQFAERGLDKSGIKVIGPGDVMDDD 236 (368)
T ss_dssp HHHHHHHTTCEEEEEEEECS--SSCCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHHHHHTTGGGTTCEEEEETTTTCHH
T ss_pred HHHHHHHcCCEEEEEEeCCC--CCCcHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHHcCCCcCCceEEecCcccCHH
Confidence 99999999999887766653 4567888999999999999999888889999999999999976667888887432211
Q ss_pred CCCCcCChhhhhhccceEEEEEecC--CChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCC
Q 008205 265 DTDSQLHSEKMDDIQGVLTLRMYTQ--SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGG 342 (574)
Q Consensus 265 ~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~ 342 (574)
.. ........|++...++.+ ..+..++|.+.| ++++. ..++.+++.+|||++++++|++++...
T Consensus 237 ~~-----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~~~------~~p~~~~~~~yda~~~~~~al~~~g~~-- 302 (368)
T 4eyg_A 237 LL-----NSMGDAALGVVTAHMYSAAHPSAMNKEFVAAY-KKEFG------QRPGFMAVGGYDGIHLVFEALKKTGGK-- 302 (368)
T ss_dssp HH-----TTCCGGGTTCEEEESCCTTCCSHHHHHHHHHH-HHHHS------SCCCHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HH-----HhhhhhhCCeEEeeecCCCCCCHHHHHHHHHH-HHhCC------CCCChHHHHHHHHHHHHHHHHHHhCCC--
Confidence 11 111245678877766543 467899999999 76631 245778999999999999999986211
Q ss_pred CccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEc-CCCCCCCCcEEEEEee--cCeE--EEEE
Q 008205 343 NISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFT-SDRDLINPAYEVINVI--GTGS--RRIG 417 (574)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd-~~G~r~~~~~~i~~~~--~~~~--~~VG 417 (574)
. ++..|.++|++++|+|++|++.|| ++|++ ...+.|.+++ ++.+ +.++
T Consensus 303 -------------------------~-~~~~l~~al~~~~~~g~~G~i~f~~~~~~~-~~~~~i~~~~~~~G~~~~v~~~ 355 (368)
T 4eyg_A 303 -------------------------A-DGDSLIAAMKGMKWESPRGPISIDPETRDI-VQNIYIRKVEKVDGELYNIEFA 355 (368)
T ss_dssp -------------------------C-SHHHHHHHHTTCEEEETTEEEEECTTTCCE-EEEEEEEEEEEETTEEEEEEEE
T ss_pred -------------------------C-CHHHHHHHHHcCCcccCCCCeEECcccCCc-ccceEEEEEEecCCeEEEEEee
Confidence 1 589999999999999999999999 66764 5678899888 6666 4556
Q ss_pred EeeC
Q 008205 418 YWSN 421 (574)
Q Consensus 418 ~w~~ 421 (574)
.|.+
T Consensus 356 ~~~~ 359 (368)
T 4eyg_A 356 KFDA 359 (368)
T ss_dssp EEEE
T ss_pred cccc
Confidence 6654
No 31
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=100.00 E-value=2.3e-36 Score=305.92 Aligned_cols=331 Identities=13% Similarity=0.116 Sum_probs=268.4
Q ss_pred CeEEEEEEeccC---CccchhHHHHHHHHHHHHhc-CCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCC
Q 008205 31 PVLNIGAVFALN---STIGKVAKVAIEAAVEDVNS-NPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQ 105 (574)
Q Consensus 31 ~~i~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~-~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~ 105 (574)
++|+||+++|++ +..|.....|+++|++++|+ .+++ .|++|+++++|+++++..+.+.+++++.+ +|.+||||.
T Consensus 3 ~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~ 81 (374)
T 3n0x_A 3 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTL-DGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS 81 (374)
T ss_dssp -CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEE-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCEEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCc-CCEEEEEEEecCCCCHHHHHHHHHHHHHhCCceEEEcCC
Confidence 579999999998 34578899999999999998 5666 58999999999999999999999999985 999999999
Q ss_pred ChHHHHHHHHhhccCCccEEecccCCCCcCCC-CCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHH
Q 008205 106 FSVIAHLVSHIANEFQVPLLSFAATDPSLSSL-QYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAA 184 (574)
Q Consensus 106 ~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~-~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~ 184 (574)
+|..+.++++++..+++|+|++.++++.+++. .+||+||+.|++..+..+++.++++++| ++++|++++++|....+.
T Consensus 82 ~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ii~~~~~~g~~~~~~ 160 (374)
T 3n0x_A 82 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIATLAQDYAFGRDGVAA 160 (374)
T ss_dssp SHHHHHHHHHHHHHHTCCEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEEEEEESSHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCccEEEcCCCchhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEEEEeCCchHHHHHHHH
Confidence 99999999999999999999977777777764 5799999999999999999988888998 799999999999999999
Q ss_pred HHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCC-----CeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCc
Q 008205 185 LGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMM-----SRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDW 259 (574)
Q Consensus 185 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~-----~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~ 259 (574)
+++.+++.|+++.....++. +..|+..++++|+..+ +++|++.+..... .+.++.++++...++.+++.+.
T Consensus 161 ~~~~~~~~G~~vv~~~~~~~--~~~d~~~~l~~i~~~~~~~~~~d~v~~~~~g~~~--~~~~~~~~~~~~~g~~~~~~~~ 236 (374)
T 3n0x_A 161 FKEALAKTGATLATEEYVPT--TTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGD--PLTKLQDMDPKRYGIELSTGGN 236 (374)
T ss_dssp HHHHHTTTTCEEEEEEEECT--TCCCCHHHHHHHHHHHTTCSSEEEEEECCCSSSC--HHHHHHHTCGGGGTEEEEECCC
T ss_pred HHHHHHHcCCEEeeeecCCC--CCccHHHHHHHHHhcCCCCCCCCEEEEEecCCcH--HHHHHHHcchhhcCCeeeeccc
Confidence 99999999999998877763 5668999999999888 9998887433221 2455666666555566665443
Q ss_pred cccccCCCCcCChhhhhhccceEEEEEe---cCCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 008205 260 LSSILDTDSQLHSEKMDDIQGVLTLRMY---TQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGA 336 (574)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~ 336 (574)
+.... .......|+.+...+ .+..+..++|.++|+++++ ..++.+++..|||++++++|+++
T Consensus 237 ~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~g-------~~p~~~a~~~Yda~~~l~~Al~~ 301 (374)
T 3n0x_A 237 ILPAL--------AAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFN-------APPDFFTAGGFSAAMAVVTAVQK 301 (374)
T ss_dssp CTTGG--------GGGGGSTTCEEEESCCTTSCCSHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cchhh--------hhhhhhcCccccceeccCCCCCHHHHHHHHHHHHHHC-------CCCChhHHHHHHHHHHHHHHHHH
Confidence 21111 111344566555433 3456789999999998885 34577899999999999999998
Q ss_pred HhhcCCCccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeecC
Q 008205 337 FFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGT 411 (574)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~~ 411 (574)
+.. .++..|.++|++++|+|++|++.|++++++....+.|++++..
T Consensus 302 ag~-----------------------------~~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~ 347 (374)
T 3n0x_A 302 AKS-----------------------------TDTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKVD 347 (374)
T ss_dssp HTS-----------------------------CCHHHHHHHHTTCEEEETTEEEEECTTTCBEECCEEEEEEECC
T ss_pred hCC-----------------------------CCHHHHHHHHhcCCccCCCCCEEECcccCccccceEEEEEEeC
Confidence 621 1589999999999999999999999654445678899988854
No 32
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=100.00 E-value=1.6e-35 Score=298.80 Aligned_cols=338 Identities=12% Similarity=0.081 Sum_probs=281.4
Q ss_pred CCeEEEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCC
Q 008205 30 PPVLNIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQ 105 (574)
Q Consensus 30 ~~~i~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~ 105 (574)
+++|+||+++|++ +..|.....++++|++++|++++++ |+++++++.|+++++..+.+.+++++.+ +|.+||||.
T Consensus 3 ~~~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~-G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iig~~ 81 (364)
T 3lop_A 3 LADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGIN-GETIRLVARDDEQKIEQTVRNVRDMARVDNPVALLTVV 81 (364)
T ss_dssp --CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEECCC
T ss_pred CCeEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcC-CeEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEecC
Confidence 4689999999997 3456778999999999999999985 8999999999999999999999999996 999999999
Q ss_pred ChHHHHHHHH--hhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHH
Q 008205 106 FSVIAHLVSH--IANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIA 183 (574)
Q Consensus 106 ~s~~~~~va~--~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~ 183 (574)
++..+.++++ ++...+||+|++.++.+.+++ +|++||+.|++..++.++++++.++||++|++|+.++++|....+
T Consensus 82 ~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~~~~~g~~~~~ 159 (364)
T 3lop_A 82 GTANVEALMREGVLAEARLPLVGPATGASSMTT--DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQEDALGKEAIT 159 (364)
T ss_dssp CHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGS--CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEETTHHHHHHHH
T ss_pred CCHHHHhhCchhhHHhcCCcEEEcccCcHhhcc--CCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEEeCchhhHHHHH
Confidence 9999999999 999999999998877776765 799999999999999999999999999999999999989999999
Q ss_pred HHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccc
Q 008205 184 ALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSI 263 (574)
Q Consensus 184 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~ 263 (574)
.+++.+++.|+++.....++ .+..++...+++++..++++|++.+....+..++++++++|+..+ |+..+.+...
T Consensus 160 ~~~~~~~~~G~~v~~~~~~~--~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~i~~~~~~~~ 234 (364)
T 3lop_A 160 GVERTLKAHALAITAMASYP--RNTANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYRARGGEAQ---LLGLSSIDPG 234 (364)
T ss_dssp HHHHHHHTTTCCCSEEEEEC--TTSCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHHHTTCCCE---EEECTTSCHH
T ss_pred HHHHHHHHcCCcEEEEEEec--CCCccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHcCCCCe---EEEeccCChH
Confidence 99999999999887666665 345678899999999999999999999999999999999998654 6666543321
Q ss_pred cCCCCcCChhhh-hhccceEEEEEe----cCCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHh
Q 008205 264 LDTDSQLHSEKM-DDIQGVLTLRMY----TQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFF 338 (574)
Q Consensus 264 ~~~~~~~~~~~~-~~~~g~~~~~~~----~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~ 338 (574)
... .... ...+|++..... ....+..++|.+.|+++++. ...++.+++.+|||+++++.|++++.
T Consensus 235 -~~~----~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-----~~~p~~~a~~~yda~~~~~~al~~ag 304 (364)
T 3lop_A 235 -ILQ----KVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVGAK-----DVDLSFRAVEGFVAAKVLAEAIRRAG 304 (364)
T ss_dssp -HHH----HHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHHTCT-----TCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred -HHH----HHhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHHHHhcCC-----CCCCChHHHHHHHHHHHHHHHHHHhC
Confidence 100 1122 456787766532 24567899999999988752 11457789999999999999999862
Q ss_pred hcCCCccccCCcccccccCCCcccccccccCchHHHHHHHHhc-cccc-ccccEEEcCCCCCCCCcEEEEEeecCeE
Q 008205 339 DQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQV-NMTG-VTGPIKFTSDRDLINPAYEVINVIGTGS 413 (574)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~-~f~G-~tG~v~Fd~~G~r~~~~~~i~~~~~~~~ 413 (574)
. . .++..|.++|+++ .|+| .+|++.|++++++......|.+++++++
T Consensus 305 ~---~-------------------------~~~~~v~~aL~~~~~~~~~~~g~i~f~~~~~~~~~~~~i~~~~~~~~ 353 (364)
T 3lop_A 305 P---K-------------------------PTREQVRHALTELRDYDVGGGFTVDFTDRSRPGSHYIELGVVGPNGL 353 (364)
T ss_dssp S---S-------------------------CCHHHHHHHHHTCEEEESSTTCEEECSSTTSCSCCCCEEEEECTTSC
T ss_pred C---C-------------------------CCHHHHHHHHHhcCCccCCCCeeeecCCCCcCCcceEEEEEEcCCCc
Confidence 1 0 1589999999999 6999 9999999998876666778888876554
No 33
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=100.00 E-value=4.8e-35 Score=297.77 Aligned_cols=343 Identities=15% Similarity=0.162 Sum_probs=275.1
Q ss_pred CCCeEEEEEEeccCC---ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcC
Q 008205 29 IPPVLNIGAVFALNS---TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGP 104 (574)
Q Consensus 29 ~~~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp 104 (574)
..++|+||+++|++. ..|.....++++|++++| |+++++++.|+++++..+.+.+++++.+ +|.+||||
T Consensus 24 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~-------G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 96 (386)
T 3sg0_A 24 AQAEIKIGITMSASGPGAALGQPQSKTVAALPKEIG-------GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIGS 96 (386)
T ss_dssp -CCCEEEEEEECCSSTTHHHHHHHHHHGGGSCSEET-------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECC
T ss_pred CCCceEEEEEeccCCchhhhcHHHHHHHHHHHHHcC-------CEEEEEEEecCCCCHHHHHHHHHHHHhhcCceEEECC
Confidence 457899999999973 346678899999998873 6899999999999999999999999988 89999999
Q ss_pred CChHHHHHHHHhhccCCccEEecccCCCCcC--CCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchH
Q 008205 105 QFSVIAHLVSHIANEFQVPLLSFAATDPSLS--SLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGI 182 (574)
Q Consensus 105 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls--~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~ 182 (574)
.++..+.++.+++...+||+|++.++++.++ ...++++||+.|++..++.++++++.++||+++++|+.++.+|....
T Consensus 97 ~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~ 176 (386)
T 3sg0_A 97 SLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYGEGYY 176 (386)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHH
T ss_pred CCchhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHH
Confidence 9999999999999999999999887776666 35679999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCcccc
Q 008205 183 AALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSS 262 (574)
Q Consensus 183 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~ 262 (574)
+.+++.+++.|+++.....++. +..++...++++++.++++|++.++...+..+++++++.|+..+ ++..+.+..
T Consensus 177 ~~~~~~l~~~g~~v~~~~~~~~--~~~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~ 251 (386)
T 3sg0_A 177 KVLAAAAPKLGFELTTHEVYAR--SDASVTGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGFKGA---IYQTHGVAT 251 (386)
T ss_dssp HHHHHHHHHHTCEECCCEEECT--TCSCCHHHHHHHHHTCCSEEEEECCSGGGHHHHHHHHHTTCCSE---EECCGGGCS
T ss_pred HHHHHHHHHcCCEEEEEEeeCC--CCCcHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCCc---EEeccccCC
Confidence 9999999999999875555552 45578889999999999999999888889999999999998643 555443221
Q ss_pred ccCCCCcCChhhhhhccceEEEEEe------cC-CC---hHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHH
Q 008205 263 ILDTDSQLHSEKMDDIQGVLTLRMY------TQ-SS---EEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAH 332 (574)
Q Consensus 263 ~~~~~~~~~~~~~~~~~g~~~~~~~------~~-~~---~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~ 332 (574)
. +.. .......+|++....+ .+ .. +..++|.++|+++++. ..++.+++.+||+++++++
T Consensus 252 ~-~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~p~~~~~~~yda~~~~~~ 320 (386)
T 3sg0_A 252 E-EFI----KLGGKDVEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAANGG------AAPTIFGVHLWDSMTLVEN 320 (386)
T ss_dssp H-HHH----HHHGGGGTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHHHTTT------CCCCHHHHHHHHHHHHHHH
T ss_pred H-HHH----HhhhhhcCCeEEecccccccccCCCCCcchHHHHHHHHHHHHHhCC------CCCChhHHHHHHHHHHHHH
Confidence 1 110 1122456787776532 11 22 4578999999988752 1357789999999999999
Q ss_pred HHHHHhhcCCCccccCCcccccccCCCcccccccccCchHHHHHHHHhc-ccccccccEEEcCCCCC--CCCcEEEEEee
Q 008205 333 AIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQV-NMTGVTGPIKFTSDRDL--INPAYEVINVI 409 (574)
Q Consensus 333 Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~-~f~G~tG~v~Fd~~G~r--~~~~~~i~~~~ 409 (574)
|++++.+.... ..+.++..+.++|+++ .|+|++|++.|++++++ .+..+.|++++
T Consensus 321 al~~a~~~~~~----------------------g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~ 378 (386)
T 3sg0_A 321 AIPAALKAAKP----------------------GTPEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDERSAFLIEIR 378 (386)
T ss_dssp HHHHHHHHCCT----------------------TSHHHHHHHHHHHTTCCSEEETTEEECCCSSCSSCCCGGGCEEEEEE
T ss_pred HHHHhhhccCC----------------------CCcchHHHHHHHHHhccCccccceeEEECCCcCCCCCCCceEEEEEE
Confidence 99998654210 0122478999999999 89999999999886543 23558899998
Q ss_pred cCeEEEE
Q 008205 410 GTGSRRI 416 (574)
Q Consensus 410 ~~~~~~V 416 (574)
+++++.+
T Consensus 379 ~G~~~~~ 385 (386)
T 3sg0_A 379 DGAFRLK 385 (386)
T ss_dssp TTEEEEC
T ss_pred CCEEEec
Confidence 8777543
No 34
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=100.00 E-value=2.5e-32 Score=277.51 Aligned_cols=346 Identities=11% Similarity=0.035 Sum_probs=274.2
Q ss_pred CCeEEEEEEeccCC---ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHh-cCcEEEEcCC
Q 008205 30 PPVLNIGAVFALNS---TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLE-NETVAIIGPQ 105 (574)
Q Consensus 30 ~~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~-~~v~aiiGp~ 105 (574)
+++++||+++|.+. ..+.....++++|++++|++++++ |+++++++.|+++++..+.+.+++++. ++|.+|||+.
T Consensus 5 ~~~~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~-G~~l~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~ 83 (385)
T 1pea_A 5 QERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVG-GRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCY 83 (385)
T ss_dssp ---CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBT-TBCCEEEEECCTTCHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred CCCeEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCC-CeEEEEEEeCCCCCHHHHHHHHHHHHhhCCcEEEECCC
Confidence 46799999999863 356778899999999999999986 899999999999999999999999996 7999999999
Q ss_pred ChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHH
Q 008205 106 FSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAAL 185 (574)
Q Consensus 106 ~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l 185 (574)
++..+.++.+++...++|+|++.+... ...++++||+.|++..++.++++++...+|+++++|+.++.++....+.+
T Consensus 84 ~s~~~~~~~~~~~~~~iP~v~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~ 160 (385)
T 1pea_A 84 MSHTRKAVMPVVERADALLCYPTPYEG---FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVM 160 (385)
T ss_dssp SHHHHHHHHHHHHHTTCEEEECSCCCC---CCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEESSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCceEEECCcccC---ccCCCCEEEecCChHHhHHHHHHHHHHccCcEEEEEeCCChHHHHHHHHH
Confidence 988888888999999999999755321 12357899999999999999999999999999999998877888888999
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccC
Q 008205 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILD 265 (574)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~ 265 (574)
++.+++.|+++.....++......++...++++++.++++|++.+....+..++++++++|+....+.++..++....+.
T Consensus 161 ~~~l~~~G~~v~~~~~~~~~~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 240 (385)
T 1pea_A 161 RHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEAEVA 240 (385)
T ss_dssp HHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHHHHHHCSSCCCCEEESSCCHHHHT
T ss_pred HHHHHHcCCEEEEEEeecCCCCcchHHHHHHHHHHCCCCEEEEecccccHHHHHHHHHHcCCCcCCceEEecccchHHHH
Confidence 99999999998765555432356788899999988889999988878889999999999998754444554432211111
Q ss_pred CCCcCChhhhhhccceEEEEEec--CCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCC
Q 008205 266 TDSQLHSEKMDDIQGVLTLRMYT--QSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGN 343 (574)
Q Consensus 266 ~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~ 343 (574)
. ......+|+++..++. ...+..++|.++|+++++. ...++.+++.+|||++++++|++++..
T Consensus 241 ~------~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~-----~~~~~~~~~~~yda~~~~~~Al~~ag~---- 305 (385)
T 1pea_A 241 K------MESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPE-----NATITAWAEAAYWQTLLLGRAAQAAGN---- 305 (385)
T ss_dssp T------SCHHHHTTCEEEESCCTTCSSHHHHHHHHHHHTTSCT-----TCCCCHHHHHHHHHHHHHHHHHHHHTS----
T ss_pred h------cCchhhCCeEEecccccccCCHHHHHHHHHHHHHhCC-----CCCCChHHHHHHHHHHHHHHHHHHhCC----
Confidence 0 0113567887776543 3467889999999987641 123567889999999999999998621
Q ss_pred ccccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEe-ecCeEEEEEEe
Q 008205 344 ISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINV-IGTGSRRIGYW 419 (574)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~-~~~~~~~VG~w 419 (574)
. ++..|+++|++++|+|++|+++||+++++....+.|.++ +++.++.|...
T Consensus 306 ------------------------~-~~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~g~~~~v~~~ 357 (385)
T 1pea_A 306 ------------------------W-RVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQS 357 (385)
T ss_dssp ------------------------C-CHHHHHHHHTTCCEEETTEEEEECTTTSCEEBCCEEEEECTTSCEEEEEEC
T ss_pred ------------------------C-CHHHHHHHHhhCcccCCCCCeEEcCCCCccccceEEEEEcCCCcEEEeecC
Confidence 0 488999999999999999999999865544566788888 56677776544
No 35
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=100.00 E-value=5.4e-33 Score=280.05 Aligned_cols=341 Identities=13% Similarity=0.116 Sum_probs=273.5
Q ss_pred CCCeEEEEEEeccCC---ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcC
Q 008205 29 IPPVLNIGAVFALNS---TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGP 104 (574)
Q Consensus 29 ~~~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp 104 (574)
..++|+||+++|++. ..|.....++++|++++| |+++++++.|+++++..+.+.+++++.+ +|.+||||
T Consensus 4 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~-------g~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 76 (362)
T 3snr_A 4 ETNEITVGISVTTTGPAAALGIPERNALEFVVKEIS-------GHPIKIIVLDDGGDPTAATTNARRFVTESKADVIMGS 76 (362)
T ss_dssp CCCCEEEEEEECCSSTTHHHHHHHHHGGGGSCSEET-------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCCeEEEEEecccCchhhcCHHHHHHHHHHHHHhC-------CeEEEEEEecCCCCHHHHHHHHHHHHhccCceEEEcC
Confidence 457899999999973 346678889999999873 6899999999999999999999999998 89999999
Q ss_pred CChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHH
Q 008205 105 QFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAA 184 (574)
Q Consensus 105 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~ 184 (574)
.++..+.++.+++...+||+|++.++ + +....++++||+.|++..++.++++++.++||+++++|+.++.++....+.
T Consensus 77 ~~s~~~~~~~~~~~~~~ip~v~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~ 154 (362)
T 3snr_A 77 SVTPPSVAISNVANEAQIPHIALAPL-P-ITPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSDSYGDLWFND 154 (362)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEESSCC-C-CCTTTTTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCccEEEecCC-c-cccCCCCcEEecCCChHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHHHH
Confidence 99999999999999999999998766 4 334567999999999999999999999999999999999999899999999
Q ss_pred HHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCcccccc
Q 008205 185 LGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSIL 264 (574)
Q Consensus 185 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~ 264 (574)
+++.+++.|+++.....++. +..++...++++++.++++|++.+....+..++++++++|+..+ ++....+...
T Consensus 155 ~~~~l~~~g~~v~~~~~~~~--~~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~p---~i~~~g~~~~- 228 (362)
T 3snr_A 155 LKKQGEAMGLKIVGEERFAR--PDTSVAGQALKLVAANPDAILVGASGTAAALPQTTLRERGYNGL---IYQTHGAASM- 228 (362)
T ss_dssp HHHHHHHTTCEEEEEEEECT--TCSCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHHHHHTTCCSE---EEECGGGCSH-
T ss_pred HHHHHHHcCCEEEEEeecCC--CCCCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCcc---EEeccCcCcH-
Confidence 99999999999877666653 45567888899988899999998888999999999999998654 4554432211
Q ss_pred CCCCcCChhhhhhccceEEEEEe----------cCCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 008205 265 DTDSQLHSEKMDDIQGVLTLRMY----------TQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAI 334 (574)
Q Consensus 265 ~~~~~~~~~~~~~~~g~~~~~~~----------~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al 334 (574)
... .......+|++..... .+..+..++|.++|+++++. ..++.+++.+|||++++++|+
T Consensus 229 ~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~p~~~~~~~yda~~~~~~al 298 (362)
T 3snr_A 229 DFI----RIAGKSAEGVLMASGPVMDPEGQDDTALTKKPGMALVKVYEEKYGP------SSRSQFAGHSYDAFKVLERVV 298 (362)
T ss_dssp HHH----HHHGGGGTTCEEEECGGGCSTTSCTTCTTHHHHHHHHHHHHHHHCT------TCCCHHHHHHHHHHHHHHHHH
T ss_pred HHH----HHhHHHhCCCEEecccccccccCCCcCcccHHHHHHHHHHHHHhCC------CCCCchhHhHHHHHHHHHHHH
Confidence 100 1122467787776531 12235689999999988752 135778999999999999999
Q ss_pred HHHhhcCCCccccCCcccccccCCCcccccccccCchHHHHHHHHhc-ccccccccEEEcCCCCC--CCCcEEEEEeecC
Q 008205 335 GAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQV-NMTGVTGPIKFTSDRDL--INPAYEVINVIGT 411 (574)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~-~f~G~tG~v~Fd~~G~r--~~~~~~i~~~~~~ 411 (574)
+++.+.... ..+.++..|+++|+++ +|+|++|+++|++++++ .+..+.|++++++
T Consensus 299 ~~a~~~~~~----------------------g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G 356 (362)
T 3snr_A 299 PVALKKAKP----------------------GTQEFREALREAFLTEKDIAASQGVYNFTETDRYGLDDRSRILLTVKNG 356 (362)
T ss_dssp HHHHHHCCT----------------------TSHHHHHHHHHHHHHCCCEECSSCEECCCSSCSSCCCGGGCEEEEEETT
T ss_pred HHhhccccC----------------------CCcchHHHHHHHHHhcCCcccceeeEEeCCCCCCCCCCCCeEEEEEECC
Confidence 998654210 0122588999999999 89999999999987443 3456899999887
Q ss_pred eEEEE
Q 008205 412 GSRRI 416 (574)
Q Consensus 412 ~~~~V 416 (574)
+++.|
T Consensus 357 ~~~~v 361 (362)
T 3snr_A 357 KYVIV 361 (362)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 77543
No 36
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.94 E-value=1.1e-25 Score=220.48 Aligned_cols=307 Identities=11% Similarity=0.087 Sum_probs=234.5
Q ss_pred EEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHH
Q 008205 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIA 110 (574)
Q Consensus 34 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~ 110 (574)
+||+++|++ +..|...+.++++|. .|.+++++++|+.+++ +...+.++++++|.+||||.+|..+
T Consensus 2 kIG~llplSG~~a~~G~~~~~G~~lA~----------~G~~i~l~~~D~~~~~--a~~~~~~l~~~~v~~IiGp~~s~~~ 69 (325)
T 2h4a_A 2 QIGLLLPLSGDGQILGTTIQSGFNDAK----------GNSTIPVQVFDTSMNS--VQDIIAQAKQAGIKTLVGPLLKQNL 69 (325)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHHHH----------TTCCSCEEEEETTTSC--HHHHHHHHHHTTCCEEECCCSHHHH
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHhc----------cCCCceEEEEECCCCh--HHHHHHHHHHCCCCEEEeeCCHHHH
Confidence 699999998 456888899999986 2578899999999987 4566777888899999999999999
Q ss_pred HHHHHhh-ccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHH
Q 008205 111 HLVSHIA-NEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKL 189 (574)
Q Consensus 111 ~~va~~~-~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~ 189 (574)
.++++.+ ...+||+|++.+++. .....+.|+||+.| ..++.++++++...|.+++++|+++++||....+.|++.+
T Consensus 70 ~a~~~~~~~~~~vp~i~~~~~~~-~~~~~~~~~f~~~~--~~~~~~~a~~a~~~g~k~vail~~~~~yG~~~~~~F~~~~ 146 (325)
T 2h4a_A 70 DVILADPAQIQGMDVLALNATPN-SRAIPQLCYYGLSP--EDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRW 146 (325)
T ss_dssp HHHHHCGGGGTTCEEEESCCCSS-CCCCTTEEECCCCH--HHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHhhhhccCCCcEEECCCCcc-ccCCCCeEEEECCH--HHHHHHHHHHHHHcCCCeEEEEEcCCcHHHHHHHHHHHHH
Confidence 9999998 779999999765432 22223456677654 4568999999888899999999999999999999999999
Q ss_pred hhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccc--cccCCC
Q 008205 190 AEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLS--SILDTD 267 (574)
Q Consensus 190 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~--~~~~~~ 267 (574)
++.|.+++..+.+.. . .|+...|+++ ..+++.|++.+....+..+.++++..|.. -..+.++.+. +. ..
T Consensus 147 ~~~Gg~vv~~~~y~~--~-~d~~~~l~~i-~~~pDaV~~~~~~~~~~~i~~~~~~~g~~---~pl~~~~~~~~~s~-~~- 217 (325)
T 2h4a_A 147 QQLAGTDANIRYYNL--P-ADVTYFVQEN-NSNTTALYAVASPTELAEXKGYLTNIVPN---LAIYASSRASASAT-NT- 217 (325)
T ss_dssp HHHHSSCCEEEEESS--T-THHHHHHHHS-TTCCCEEEECCCHHHHHHHHHHHTTTCTT---CEEEECGGGCCHHH-HT-
T ss_pred HHcCCCcceeEecCC--H-HHHHHHHHhc-CCCCCEEEEeCCHHHHhhhhhhHhhcCCC---CCEEEeccccccCC-CC-
Confidence 999998888777763 3 6899999998 47899999999998888888888776543 3366665554 21 11
Q ss_pred CcCChhhhhhccceEEEEE-e--cCCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCc
Q 008205 268 SQLHSEKMDDIQGVLTLRM-Y--TQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNI 344 (574)
Q Consensus 268 ~~~~~~~~~~~~g~~~~~~-~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~ 344 (574)
.......++|++.... + .++.+.+++|.+.|+..+ .+....++.|||+.++... .++.+
T Consensus 218 ---~~~~~~~~~Gv~f~~~p~~~~~~~~~~~~f~~~~~~~~---------~~~rl~AlgyDA~~l~~~l-~~l~~----- 279 (325)
T 2h4a_A 218 ---NTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY---------QLMRLYAMGADAWLLINQF-NELRQ----- 279 (325)
T ss_dssp ---CHHHHHHTTTCEEEECGGGSCCCSHHHHHHHHHTTTCH---------HHHHHHHHHHHHHHHHHTH-HHHHH-----
T ss_pred ---CchhhhhcCCcEEEccccccCCCcHHHHHHHhccCCCc---------chHHHHHHHHHHHHHHHHH-HHHhh-----
Confidence 1233467889877653 2 345567888887775322 1344568999999986554 33211
Q ss_pred cccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeecCeEEEE
Q 008205 345 SFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRI 416 (574)
Q Consensus 345 ~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~~~~~~V 416 (574)
+....|.|+||.++||++|+ ....+.+.+++++.++.|
T Consensus 280 ---------------------------------~~~~~~~G~tG~l~~~~~g~-~~R~l~~~~~~~G~~~~~ 317 (325)
T 2h4a_A 280 ---------------------------------VPGYRLSGLTGILSADTNCN-VERDMTWYQYQDGAIVPV 317 (325)
T ss_dssp ---------------------------------STTCCEEETTEEEEECTTCB-EEEECEEEEEETTEEEEC
T ss_pred ---------------------------------CCCCeeccCceeEEECCCCe-EEEeechhhccCCeEEEe
Confidence 22347999999999999997 456788999988877665
No 37
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.94 E-value=7e-26 Score=224.21 Aligned_cols=314 Identities=12% Similarity=0.066 Sum_probs=233.2
Q ss_pred EEEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHH
Q 008205 33 LNIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI 109 (574)
Q Consensus 33 i~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 109 (574)
+|||+++|++ +..|...+.++++|++ +.+++++++|+++++..++ ...+.+++|.+||||.+|..
T Consensus 3 ~kIG~l~PlSG~~a~~G~~~~~g~~lA~~----------g~~i~l~~~D~~~~~~~aa--~~~~~~~~v~~iiGp~~s~~ 70 (327)
T 3ckm_A 3 SQIGLLLPLSGDGQILGTTIQSGFNDAKG----------NSTIPVQVFDTSMNSVQDI--IAQAKQAGIKTLVGPLLKQN 70 (327)
T ss_dssp CCEEEEECCSSTTHHHHHHHHHHHHHHHT----------TCCSCEEEEETTTSCHHHH--HHHHHHTTCCEEECCCSHHH
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHhCC----------CCCceEEEEeCCCCHHHHH--HHHHHHcCCeEEEEcccccc
Confidence 6899999998 4467788889988863 4567899999999987654 34556679999999999888
Q ss_pred HHHHHHh-hccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHH
Q 008205 110 AHLVSHI-ANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDK 188 (574)
Q Consensus 110 ~~~va~~-~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~ 188 (574)
+.+++.. .....+|+++.++++.. ...+++||+.+++..++.++++++...|++++++++++++||....+.|++.
T Consensus 71 ~~a~~~~~~~~~~v~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii~~~~~yg~~~~~~f~~~ 147 (327)
T 3ckm_A 71 LDVILADPAQIQGMDVLALNATPNS---RAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVR 147 (327)
T ss_dssp HHHHHHCGGGGTTCEEEESCCCTTC---CCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHH
T ss_pred chhhHHHHHhccCceEeccCcCccc---ccCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEEecCChHHHHHHHHHHHH
Confidence 7776655 45666777765433322 2348899999999999999999999999999999999999999999999999
Q ss_pred HhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeCccccccCCCC
Q 008205 189 LAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDS 268 (574)
Q Consensus 189 ~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~ 268 (574)
+++.|.+|.....++. . +....+..++..++++|++.....++..++++++++|+..+ ++.++.+.......
T Consensus 148 ~~~~Gg~vv~~~~~~~--~--~~~~~~~~~~~~~~dai~~~~~~~~~~~i~~q~~~~g~~~~---~~~~~~~~~~~~~~- 219 (327)
T 3ckm_A 148 WQQLAGTDANIRYYNL--P--ADVTYFVQENNSNTTALYAVASPTELAEMKGYLTNIVPNLA---IYASSRASASATNT- 219 (327)
T ss_dssp HHHHHSSCCEEEEESS--T--THHHHHHHHSCTTCCEEEECCCHHHHHHHHHHHTTTCTTCE---EEECGGGCCHHHHT-
T ss_pred HHHCCCeEEEEEECCC--C--chhhHHHHHhccCCcEEEEEcCHHHHHHHHHHHHhhhccCC---EEeeeccccccchh-
Confidence 9999999888777752 2 23356677888999999999999999999999999886543 66665433221110
Q ss_pred cCChhhhhhccceEEEEEe---cCCChHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 008205 269 QLHSEKMDDIQGVLTLRMY---TQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNIS 345 (574)
Q Consensus 269 ~~~~~~~~~~~g~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~ 345 (574)
.........|++..... .+..+.++.|.++|+..++ .....+++|||+.+++.+.+..
T Consensus 220 --~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~---------~~~~~AlgyDA~~l~~~l~~~~-------- 280 (327)
T 3ckm_A 220 --NTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQ---------LMRLYAMGADAWLLINQFNELR-------- 280 (327)
T ss_dssp --CHHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCHH---------HHHHHHHHHHHHHHHHTHHHHH--------
T ss_pred --cchhhhhcCCeEEEcccccCCCCCHHHHHHHHHHHhhcC---------CCchHHHHHHHHHHHHHHHHhc--------
Confidence 01222346676655432 3456778888888775543 2335678999998876544321
Q ss_pred ccCCcccccccCCCcccccccccCchHHHHHHHHhcccccccccEEEcCCCCCCCCcEEEEEeecCeEEEEEEee
Q 008205 346 FSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWS 420 (574)
Q Consensus 346 ~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~v~Fd~~G~r~~~~~~i~~~~~~~~~~VG~w~ 420 (574)
.+....|.|+||.++||++|+ ....+.+.+++++.+++|..-+
T Consensus 281 -------------------------------~~~~~~f~G~tG~i~fd~~G~-~~r~l~~~~~~~G~~vpv~d~~ 323 (327)
T 3ckm_A 281 -------------------------------QVPGYRLSGLTGILSADTNCN-VERDMTWYQYQDGAIVPVVDHH 323 (327)
T ss_dssp -------------------------------HSTTCCEEETTEEEEECTTCB-EEEECEEEEEETTEEEECC---
T ss_pred -------------------------------CCCCCCceeceEEEEECCCCC-CccccEEEEEECCEEEEccccc
Confidence 112236999999999999996 4567889999999998887543
No 38
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.22 E-value=3.3e-12 Score=123.63 Aligned_cols=71 Identities=15% Similarity=0.277 Sum_probs=63.1
Q ss_pred CcccceeeHHHHHHHHHhCCCCcCeEEEECCCCC------CC----CChHHHHHHhhhcccccccccccceeeeEEEEee
Q 008205 492 TDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGH------NS----PKRFDLLRLVSEEVSMKRKKIFFNLVILFAILAN 561 (574)
Q Consensus 492 ~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~------~~----~~~~gli~~l~~~~~d~~~~~~~~~~~~~~~~~~ 561 (574)
+.+++|||+||+++|++.+||+ |+++.++||+ .| +.|++++++|.+|++|++ ++++++|++
T Consensus 60 ~g~~~G~~vDll~~ia~~lg~~--~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l~~g~~D~~-------~~~~~~t~~ 130 (292)
T 1pb7_A 60 PQCCYGFCIDLLIKLARTMNFT--YEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMI-------VAPLTINNE 130 (292)
T ss_dssp EEEEESHHHHHHHHHHHHHTCC--EEEEECTTCCCCCEEECTTSSCEEECHHHHHHHHTSCSEE-------CSSCBCCHH
T ss_pred ccCcceeHHHHHHHHHHHcCce--EEEEEecCCcccccccccccccCcHHHHHHHHHcCCcCEE-------EeeeEecHH
Confidence 4579999999999999999999 9999998876 22 489999999999999999 888999999
Q ss_pred Cc----eeeecccc
Q 008205 562 GG----FLVPCRSM 571 (574)
Q Consensus 562 ~~----~~v~f~~~ 571 (574)
|+ |+.||++.
T Consensus 131 R~~~~~fs~Py~~~ 144 (292)
T 1pb7_A 131 RAQYIEFSKPFKYQ 144 (292)
T ss_dssp HHTTEEECSCSEEE
T ss_pred HhcceEechhhHhc
Confidence 98 77788764
No 39
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.16 E-value=5e-12 Score=122.55 Aligned_cols=69 Identities=25% Similarity=0.374 Sum_probs=62.5
Q ss_pred ccceeeHHHHHHHHHhCCCCcCeEEEECCCCC----CCCChHHHHHHhhhcccccccccccceeeeEEEEeeCc----ee
Q 008205 494 KFSGYCIDVFTAVLELLPYAVPYKLVPFGDGH----NSPKRFDLLRLVSEEVSMKRKKIFFNLVILFAILANGG----FL 565 (574)
Q Consensus 494 ~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~----~~~~~~gli~~l~~~~~d~~~~~~~~~~~~~~~~~~~~----~~ 565 (574)
+++|||+||+++|++.+||+ |+++.++||+ .++.|++++++|.+|++|++ ++++++|++|+ |+
T Consensus 67 ~~~G~~vdll~~ia~~lg~~--~~~~~~~~~~~g~~~~~~w~~~~~~l~~g~~D~~-------~~~~~~t~eR~~~~~fs 137 (294)
T 2rc8_A 67 CCYGYCIDLLEQLAEDMNFD--FDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMA-------VTSFSINTARSQVIDFT 137 (294)
T ss_dssp EEESHHHHHHHHHHHHHTEE--EEEEECTTCCCCCEETTEECHHHHHHHHTSCSEE-------CSSCBCCHHHHTTSEEC
T ss_pred CceEEhHHHHHHHHHHcCCc--EEEEECCCCcccccCCCCHHHHHHHHHCCCcCEE-------EeccccCHhHhceEEEc
Confidence 47999999999999999999 9999998876 56799999999999999999 88899999997 77
Q ss_pred eecccc
Q 008205 566 VPCRSM 571 (574)
Q Consensus 566 v~f~~~ 571 (574)
.||++.
T Consensus 138 ~P~~~~ 143 (294)
T 2rc8_A 138 SPFFST 143 (294)
T ss_dssp SCSEEE
T ss_pred cchHhc
Confidence 787764
No 40
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.10 E-value=2.1e-11 Score=117.42 Aligned_cols=104 Identities=18% Similarity=0.223 Sum_probs=82.1
Q ss_pred CCCceee---cCCCCceEEeccCccccccceeccC---CCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCC----CCC
Q 008205 459 KPRGWVF---PNNGRHLRIGVPSQVIYPEFVAQGK---GTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGH----NSP 528 (574)
Q Consensus 459 ~p~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~---g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~----~~~ 528 (574)
+|..+.. +.++++|||+++...+|+++..... ++.+++|||+||++++++.+||+ |+++.++||+ .++
T Consensus 15 ~P~v~~~~~~~~~~~~lrvgv~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~i~~~lg~~--~~~~~~~~~~~g~~~~~ 92 (284)
T 2a5s_A 15 APFVIVEDIDPLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFT--YDLYLVTNGKHGKKVNN 92 (284)
T ss_dssp TTTBEEEECCCC-CCCCTTCEEEEEEEESSSSSSCEEEEEEEEESHHHHHHHHHHHHHTCC--EEEEECCSSSSCCEETT
T ss_pred CCeEEeeccCCCCCccccccccccccccccccccCCCCCcceeeEEhHHHHHHHHHHCCCC--EEEEEccCCccCcccCC
Confidence 4554432 3468899999988777776643211 12379999999999999999999 9999998765 467
Q ss_pred ChHHHHHHhhhcccccccccccceeeeEEEEeeCc----eeeecccc
Q 008205 529 KRFDLLRLVSEEVSMKRKKIFFNLVILFAILANGG----FLVPCRSM 571 (574)
Q Consensus 529 ~~~gli~~l~~~~~d~~~~~~~~~~~~~~~~~~~~----~~v~f~~~ 571 (574)
.|++++++|.+|++|++ ++++++|++|+ |+.||+..
T Consensus 93 ~~~~~~~~l~~g~~D~~-------~~~~~~t~~R~~~~~fs~p~~~~ 132 (284)
T 2a5s_A 93 VWNGMIGEVVYQRAVMA-------VGSLTINEERSEVVDFSVPFVET 132 (284)
T ss_dssp EECHHHHHHHTTSCSEE-------CSSCBCCHHHHTTEEECCCCEEE
T ss_pred CHHHHHHHHhcCCcCEE-------EEEEEEeccccceEEeccCchhc
Confidence 99999999999999999 88999999998 77777653
No 41
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=98.85 E-value=1.1e-09 Score=103.76 Aligned_cols=94 Identities=23% Similarity=0.350 Sum_probs=74.1
Q ss_pred CCceEEeccCccccccceec---cCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCC------CCCChHHHHHHhhh
Q 008205 469 GRHLRIGVPSQVIYPEFVAQ---GKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGH------NSPKRFDLLRLVSE 539 (574)
Q Consensus 469 ~~~~~v~~~~~~~~~~~~~~---~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~------~~~~~~gli~~l~~ 539 (574)
+++|||++...+||...... ..|+.++.||++||++++++.+|++ ++++.+++++ .+..|++++..|.+
T Consensus 3 ~~~l~v~~~~~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~--~~~~~~p~~~~g~~~~~~~~~~~~~~~l~~ 80 (259)
T 3g3k_A 3 NRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFT--YEIRLVEDGKYGAQDDVNGQWNGMVRELID 80 (259)
T ss_dssp CCCEEEEECCBTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTCC--EEEEECTTCCCCCBCTTTCCBCHHHHHHHT
T ss_pred CcEEEEEEecCCCeEEEeecccccCCCceeeeEHHHHHHHHHHHcCCe--EEEEECCCCCcCcccCCCCcchHHHHHHhc
Confidence 57799998665444322110 1236789999999999999999999 9999887655 14689999999999
Q ss_pred cccccccccccceeeeEEEEeeCc----eeeecccc
Q 008205 540 EVSMKRKKIFFNLVILFAILANGG----FLVPCRSM 571 (574)
Q Consensus 540 ~~~d~~~~~~~~~~~~~~~~~~~~----~~v~f~~~ 571 (574)
|++|++ ++++++|++|+ |+.|++..
T Consensus 81 g~~D~~-------~~~~~~t~eR~~~~~fs~py~~~ 109 (259)
T 3g3k_A 81 HKADLA-------VAPLAITYVREEVIDFSKPFMTL 109 (259)
T ss_dssp TSCSEE-------CSSCBCCHHHHTTEEECSCSEEE
T ss_pred CcccEE-------EeeeEecccccceEeeeeeeeeC
Confidence 999999 88899999998 66776654
No 42
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=98.76 E-value=3.2e-09 Score=100.79 Aligned_cols=90 Identities=19% Similarity=0.263 Sum_probs=72.0
Q ss_pred CCceEEeccCccccccceeccC---CC-cccceeeHHHHHHHHHhCCCCcCeEEEECCCCC-----CCCChHHHHHHhhh
Q 008205 469 GRHLRIGVPSQVIYPEFVAQGK---GT-DKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGH-----NSPKRFDLLRLVSE 539 (574)
Q Consensus 469 ~~~~~v~~~~~~~~~~~~~~~~---g~-~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~-----~~~~~~gli~~l~~ 539 (574)
+++|+|++...+|| ..... |+ .++.||++||++++++.+|++ ++++.+++++ .+..|++++..|.+
T Consensus 2 ~~~l~v~~~~~pP~---~~~~~~~~g~~g~~~G~~~dl~~~i~~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~~~l~~ 76 (265)
T 2v3u_A 2 GVVLRVVTVLEEPF---VMVSENVLGKPKKYQGFSIDVLDALSNYLGFN--YEIYVAPDHKYGSPQEDGTWNGLVGELVF 76 (265)
T ss_dssp CCEEEEEECCBTTT---BEEECCSTTCCCEEESHHHHHHHHHHHHHTCE--EEEEECTTCCCCCBCTTSCBCHHHHHHHT
T ss_pred CeEEEEEEeccCCe---EEEecCCCCCcceEeEEEHHHHHHHHHHcCCc--EEEEEccCCcccccCCCCCcchHHHHHHc
Confidence 57889998665444 33221 22 589999999999999999999 9998887654 34699999999999
Q ss_pred cccccccccccceeeeEEEEeeCc----eeeeccc
Q 008205 540 EVSMKRKKIFFNLVILFAILANGG----FLVPCRS 570 (574)
Q Consensus 540 ~~~d~~~~~~~~~~~~~~~~~~~~----~~v~f~~ 570 (574)
|++|++ ++++++|++|+ |+.|++.
T Consensus 77 g~~D~~-------~~~~~~t~~R~~~~~fs~p~~~ 104 (265)
T 2v3u_A 77 KRADIG-------ISALTITPDRENVVDFTTRYMD 104 (265)
T ss_dssp TSCSEE-------CSSCBCCHHHHTTEEECSCSEE
T ss_pred CCcCeE-------EeeeEeehhhhccccccceeee
Confidence 999999 88899999997 6667654
No 43
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=98.75 E-value=3.2e-09 Score=103.65 Aligned_cols=91 Identities=24% Similarity=0.397 Sum_probs=73.3
Q ss_pred CCceEEeccCccccccceeccC------CCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCC------CCCChHHHHHH
Q 008205 469 GRHLRIGVPSQVIYPEFVAQGK------GTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGH------NSPKRFDLLRL 536 (574)
Q Consensus 469 ~~~~~v~~~~~~~~~~~~~~~~------g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~------~~~~~~gli~~ 536 (574)
.++|+|++...+| |..... ++.++.||++||++++++.+|++ |+++.+++++ .+..|++++..
T Consensus 12 ~~~l~V~~~~~~P---~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~ 86 (312)
T 1yae_A 12 NRSLIVTTILEEP---YVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFT--YEIRLVEDGKYGAQDDVNGQWNGMVRE 86 (312)
T ss_dssp SCEEEEEECCBTT---TBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCCE--EEEEECSSCCCCCBCTTTCCBCSHHHH
T ss_pred CceEEEEEeccCC---eeEEeccccccCCCceEEEEEHHHHHHHHHHcCCe--EEEEecCCCccceeccCCCcchHHHHH
Confidence 5778999865444 433221 45689999999999999999999 9998876654 15799999999
Q ss_pred hhhcccccccccccceeeeEEEEeeCc----eeeecccc
Q 008205 537 VSEEVSMKRKKIFFNLVILFAILANGG----FLVPCRSM 571 (574)
Q Consensus 537 l~~~~~d~~~~~~~~~~~~~~~~~~~~----~~v~f~~~ 571 (574)
|.+|++|++ ++++++|++|+ |+.||+..
T Consensus 87 l~~g~~D~~-------~~~~~~t~eR~~~~~fs~py~~~ 118 (312)
T 1yae_A 87 LIDHKADLA-------VAPLAITYVREKVIDFSKPFMTL 118 (312)
T ss_dssp HHTTSCSEE-------CSSCBCCHHHHHHEEEEEEEEEE
T ss_pred HhCCCcCEE-------eecceechhhcceEEecceeeec
Confidence 999999999 88899999997 77787653
No 44
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=98.64 E-value=1.2e-08 Score=96.79 Aligned_cols=91 Identities=19% Similarity=0.332 Sum_probs=71.3
Q ss_pred CCceEEeccCccccccceeccC------CCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCC-----CCC-ChHHHHHH
Q 008205 469 GRHLRIGVPSQVIYPEFVAQGK------GTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGH-----NSP-KRFDLLRL 536 (574)
Q Consensus 469 ~~~~~v~~~~~~~~~~~~~~~~------g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~-----~~~-~~~gli~~ 536 (574)
+++|+|++.. ++||..... ++.++.||++||++++++.+|++ ++++..++|. .++ .|++++..
T Consensus 3 ~~~l~v~~~~---~pP~~~~~~~~~~~~~~g~~~G~~~dl~~~ia~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~ 77 (263)
T 1mqi_A 3 NKTVVVTTIL---ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGE 77 (263)
T ss_dssp CCCEEEEECC---BTTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCC--EEEEECTTCCCCCBCTTTCCBCHHHHH
T ss_pred CeEEEEEEec---CCCcEEEecCcccccCCCceeeeHHHHHHHHHHHcCce--EEEEEccccccCccCCCCCCcHHHHHH
Confidence 4678888854 455554322 14689999999999999999999 8998885433 233 79999999
Q ss_pred hhhcccccccccccceeeeEEEEeeCc----eeeecccc
Q 008205 537 VSEEVSMKRKKIFFNLVILFAILANGG----FLVPCRSM 571 (574)
Q Consensus 537 l~~~~~d~~~~~~~~~~~~~~~~~~~~----~~v~f~~~ 571 (574)
|.+|++|++ ++++++|++|+ |+.|++..
T Consensus 78 l~~g~~D~~-------~~~~~~t~~R~~~~~fs~p~~~~ 109 (263)
T 1mqi_A 78 LVYGKADIA-------IAPLTITLVREEVIDFSKPFMSL 109 (263)
T ss_dssp HHTTSCSEE-------CSSCBCCHHHHTTEEECSCSEEE
T ss_pred HHcCCcCEE-------EEeeEecHHHHhhcccccceecc
Confidence 999999999 88899999998 66666543
No 45
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=98.64 E-value=8.9e-09 Score=96.46 Aligned_cols=84 Identities=17% Similarity=0.172 Sum_probs=71.2
Q ss_pred CceEEeccCccccccceec--cCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhcccccccc
Q 008205 470 RHLRIGVPSQVIYPEFVAQ--GKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKK 547 (574)
Q Consensus 470 ~~~~v~~~~~~~~~~~~~~--~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~ 547 (574)
.+|+|++. ..|+||... ..++.++.||.+||++++++.+|++ ++++.. .|+.++..|..|++|++
T Consensus 12 g~L~Vg~~--~~~pP~~~~~~~d~~g~~~G~~vdl~~~ia~~lg~~--~~~~~~-------~~~~~~~~l~~g~~d~~-- 78 (243)
T 4h5g_A 12 GKLVVATS--PDYAPFEFQSLVDGKNQVVGADIDMAQAIADELGVK--LEILSM-------SFDNVLTSLQTGKADLA-- 78 (243)
T ss_dssp TEEEEEEC--CCBTTTBEEEEETTEEEEESHHHHHHHHHHHHHTSE--EEEEEC-------CGGGHHHHHHTTSCSEE--
T ss_pred CEEEEEEC--CCCCCcEeeeccCCCCcEEEeHHHHHHHHHHHhCCc--eEEecc-------cHHHHHHHHHcCCCCcc--
Confidence 45888884 357776542 3567789999999999999999999 899888 89999999999999999
Q ss_pred cccceeeeEEEEeeCc----eeeecccc
Q 008205 548 IFFNLVILFAILANGG----FLVPCRSM 571 (574)
Q Consensus 548 ~~~~~~~~~~~~~~~~----~~v~f~~~ 571 (574)
++++++|+||+ |+.|++..
T Consensus 79 -----~~~~~~t~eR~~~~~fs~py~~~ 101 (243)
T 4h5g_A 79 -----VAGISATDERKEVFDFSIPYYEN 101 (243)
T ss_dssp -----CSSCBCCHHHHTTEEECSCSBCC
T ss_pred -----cccccCChhHccEEEccCccccC
Confidence 88999999998 77777654
No 46
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=98.63 E-value=9.5e-09 Score=96.24 Aligned_cols=82 Identities=13% Similarity=0.182 Sum_probs=68.3
Q ss_pred CCceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhC-CCCcCeEEEECCCCCCCCChHHHHHHhhhcccccccc
Q 008205 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELL-PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKK 547 (574)
Q Consensus 469 ~~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l-~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~ 547 (574)
.++|+|++.. .|+||.... .+.++.||++||+++|++.| |++ ++++.. .|++++..|..|++|++
T Consensus 8 ~~tl~vg~~~--~~pP~~~~d-~~G~~~G~~vdl~~~ia~~l~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~-- 73 (243)
T 4gvo_A 8 VQTITVGTGT--QFPNVCFLD-ENGKLTGYDVELVKEIDKRLPGYK--FKFKTM-------DFSNLLVSLGAGKVDIV-- 73 (243)
T ss_dssp CEEEEEEECS--EETTTEEEC-TTSCEESHHHHHHHHHHHTCTTEE--EEEEEC-------CGGGHHHHHHTTSCSEE--
T ss_pred CCeEEEEECC--CCCCeEEEC-CCCcEEEhHHHHHHHHHHhccCCe--EEEEEC-------CHHHHHHHHHCCCCCEe--
Confidence 4778999843 477776543 34579999999999999998 888 888888 89999999999999999
Q ss_pred cccceeeeEEEEeeCc----eeeecc
Q 008205 548 IFFNLVILFAILANGG----FLVPCR 569 (574)
Q Consensus 548 ~~~~~~~~~~~~~~~~----~~v~f~ 569 (574)
++++++|+||+ |+-|++
T Consensus 74 -----~~~~~~t~eR~~~~~fs~p~~ 94 (243)
T 4gvo_A 74 -----AHQMEKSKEREKKFLFNDVAY 94 (243)
T ss_dssp -----CSCCBCCHHHHHHSEECSSCC
T ss_pred -----cccCCCCHHHhhhhhhhhhhc
Confidence 88999999998 565543
No 47
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=98.45 E-value=8.5e-08 Score=88.96 Aligned_cols=85 Identities=11% Similarity=0.100 Sum_probs=69.8
Q ss_pred CCceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhccccccccc
Q 008205 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKI 548 (574)
Q Consensus 469 ~~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~ 548 (574)
.++++|++.. .|+||.... .+.++.||++||++++++.+|++ ++++.. .|+.++..|.+|++|++
T Consensus 4 a~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~--- 68 (232)
T 3i6v_A 4 ADTVRMGTEG--AYPPYNFIN-DAGEVDGFERELGDELCKRAGLT--CEWVKN-------DWDSIIPNLVSGNYDTI--- 68 (232)
T ss_dssp --CEEEEECS--EETTTEEEC-TTSCEESHHHHHHHHHHHHHTCC--EEEEEC-------CGGGHHHHHHTTSCSEE---
T ss_pred CCEEEEEECC--CCCCeeEEC-CCCCEeeehHHHHHHHHHHcCCc--eEEEEC-------CHHHHHHHHHCCCCCEE---
Confidence 3668888753 466665432 35579999999999999999999 899887 89999999999999999
Q ss_pred ccceeeeEEEEeeCc----eeeeccccc
Q 008205 549 FFNLVILFAILANGG----FLVPCRSMT 572 (574)
Q Consensus 549 ~~~~~~~~~~~~~~~----~~v~f~~~~ 572 (574)
++++++|++|+ |+.|++...
T Consensus 69 ----~~~~~~t~~r~~~~~fs~p~~~~~ 92 (232)
T 3i6v_A 69 ----IAGMSITDERDEVIDFTQNYIPPT 92 (232)
T ss_dssp ----CSSCBCCHHHHTTSEEEEEEECCC
T ss_pred ----EeCCcCCHHHHhhcCcccccccCC
Confidence 88899999997 888887543
No 48
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=98.30 E-value=1.8e-05 Score=76.05 Aligned_cols=206 Identities=13% Similarity=0.002 Sum_probs=125.6
Q ss_pred CCeEEEEEEecc---CCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCC
Q 008205 30 PPVLNIGAVFAL---NSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQF 106 (574)
Q Consensus 30 ~~~i~IG~l~~~---~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~ 106 (574)
....+||+++|. +..+......+++.+.++. |+++ .+.+...++....+.+..++++++.+||....
T Consensus 17 ~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 86 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--------GRQL--LLADGKHSAEEERQAIQYLLDLRCDAIMIYPR 86 (296)
T ss_dssp --CCEEEEEECGGGCC--CHHHHHHHHHHHHHHT--------TCEE--EEECCTTSHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCCceEEEEeCCcccCCchHHHHHHHHHHHHHHC--------CCEE--EEEeCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 356789999986 3444455666776666652 4544 45566667766666677778888988876433
Q ss_pred hHHHHHHHHhhcc-CCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHH
Q 008205 107 SVIAHLVSHIANE-FQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIA 183 (574)
Q Consensus 107 s~~~~~va~~~~~-~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~ 183 (574)
......+. .+.. .++|+|......+ . +.+..+.++....+..+++.+...|.++++++..... .+....+
T Consensus 87 ~~~~~~~~-~l~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~~~~~~~~~~R~~ 159 (296)
T 3brq_A 87 FLSVDEID-DIIDAHSQPIMVLNRRLR---K---NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLA 159 (296)
T ss_dssp SSCHHHHH-HHHHTCSSCEEEESCCCS---S---SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHH
T ss_pred CCChHHHH-HHHhcCCCCEEEEccccC---C---CCCCEEEEchHHHHHHHHHHHHHCCCceEEEEcCCCCCccHHHHHH
Confidence 22223333 3445 7999998753322 1 2233456667767777888877779999999986532 3445677
Q ss_pred HHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeE
Q 008205 184 ALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYV 253 (574)
Q Consensus 184 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~ 253 (574)
.+++.+++.|+.+.....+....+..+....++++.+. +.+.|+ +.+...+..+++++++.|+..++-+
T Consensus 160 gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di 230 (296)
T 3brq_A 160 GYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALV-ASNDDMAIGAMKALHERGVAVPEQV 230 (296)
T ss_dssp HHHHHHHTTTCCCCGGGEECCCSSHHHHHHHHHHHHTC--CCSEEE-ESSHHHHHHHHHHHHHHTCCTTTTC
T ss_pred HHHHHHHHcCCCCChhhEEeCCCChhHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCce
Confidence 88889988887543211122112333334455555332 455554 4456668888999999998654433
No 49
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=98.28 E-value=4.6e-05 Score=72.22 Aligned_cols=208 Identities=11% Similarity=-0.010 Sum_probs=131.1
Q ss_pred EEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcC-cEEEEcCC-ChHH
Q 008205 33 LNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENE-TVAIIGPQ-FSVI 109 (574)
Q Consensus 33 i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~-v~aiiGp~-~s~~ 109 (574)
++||+++|.. ..+......+++.+.++. |+++.+...+...++....+.+..++.++ +.+||-.. .+..
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~ 72 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEA--------GVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAED 72 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTT
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHH
Confidence 4899999864 333345566666666663 46665554445667777777778888888 99888644 3333
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHc----CCeEEEEEEEcCC--CCcchHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF----GWRNVIALYVDDD--HGRNGIA 183 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~----~W~~v~ii~~~~~--~g~~~~~ 183 (574)
.......+...++|+|......+ .. +....+.+.....+..+++.+... |-++++++..... ......+
T Consensus 73 ~~~~~~~~~~~~ipvV~~~~~~~---~~--~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~ 147 (276)
T 3ksm_A 73 LTPSVAQYRARNIPVLVVDSDLA---GD--AHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQ 147 (276)
T ss_dssp THHHHHHHHHTTCCEEEESSCCS---SS--CSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEEecCCC---CC--CcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHH
Confidence 34445566778999998754322 11 223445667777888888887776 8999999985432 2445678
Q ss_pred HHHHHHhhc-CcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEe
Q 008205 184 ALGDKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVT 257 (574)
Q Consensus 184 ~l~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~ 257 (574)
.+++.+++. |+.+... .....+.......++++-.. +.+. |++.+...+..+++++++.|+ ..+...+..
T Consensus 148 gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~a-i~~~~d~~a~g~~~al~~~g~-p~di~vig~ 220 (276)
T 3ksm_A 148 GFLDVLRKHDKIRIIAA--PYAGDDRGAARSEMLRLLKETPTIDG-LFTPNESTTIGALVAIRQSGM-SKQFGFIGF 220 (276)
T ss_dssp HHHHHHTTCTTEEEEEC--CBCCSSHHHHHHHHHHHHHHCSCCCE-EECCSHHHHHHHHHHHHHTTC-TTSSEEEEE
T ss_pred HHHHHHHhCCCcEEEEE--ecCCCcHHHHHHHHHHHHHhCCCceE-EEECCchhhhHHHHHHHHcCC-CCCeEEEEe
Confidence 888899888 8776532 22223334444455554333 3443 334456677789999999997 333444443
No 50
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=98.28 E-value=7.4e-05 Score=72.38 Aligned_cols=207 Identities=11% Similarity=0.036 Sum_probs=126.8
Q ss_pred EEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCChHHHH
Q 008205 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVIAH 111 (574)
Q Consensus 33 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 111 (574)
++||++.|....+......+++.+.++. |+++.+.. .+..++....+.+.+++.+++.+||. |..+....
T Consensus 2 ~~Ig~i~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~~~-~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (313)
T 2h3h_A 2 LTIGVIGKSVHPYWSQVEQGVKAAGKAL--------GVDTKFFV-PQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVI 72 (313)
T ss_dssp CEEEEECSCSSHHHHHHHHHHHHHHHHH--------TCEEEEEC-CSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHHHHc--------CCEEEEEC-CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 5799999865323345566666666653 45554432 13457766667777888888988775 44443322
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEcC--CCCcchHHHHHH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVDD--DHGRNGIAALGD 187 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~--~W~~v~ii~~~~--~~g~~~~~~l~~ 187 (574)
.....+...+||+|......+. .+.+..+.+++...+..+++.+... |.++++++.... .......+.+++
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 147 (313)
T 2h3h_A 73 PTIKKALEMGIPVVTLDTDSPD-----SGRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKD 147 (313)
T ss_dssp HHHHHHHHTTCCEEEESSCCTT-----SCCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEeCCCCCC-----cceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHH
Confidence 3334456689999987543221 1223345667777778888877666 899999998652 233456778889
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEe
Q 008205 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVT 257 (574)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~ 257 (574)
.+++.|+.+....... .+..+....++++... ..+.|+. .+...+..+++++++.|. ..+...+..
T Consensus 148 ~l~~~g~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~-p~dv~vvg~ 215 (313)
T 2h3h_A 148 AIKDSEIEIVDILNDE--EDGARAVSLAEAALNAHPDLDAFFG-VYAYNGPAQALVVKNAGK-VGKVKIVCF 215 (313)
T ss_dssp HHTTSSCEEEEEEECS--SCHHHHHHHHHHHHHHCTTCCEEEE-CSTTHHHHHHHHHHHTTC-TTTSEEEEE
T ss_pred HhcCCCCEEEEeecCC--CCHHHHHHHHHHHHHHCcCceEEEE-cCCCccHHHHHHHHHcCC-CCCeEEEEe
Confidence 9998898765432211 2334444455554333 3455544 455677788999999994 233444443
No 51
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=98.25 E-value=6.1e-07 Score=83.31 Aligned_cols=84 Identities=17% Similarity=0.224 Sum_probs=68.7
Q ss_pred CceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhcccccccccc
Q 008205 470 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKIF 549 (574)
Q Consensus 470 ~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~~ 549 (574)
++|+|++.. .|+||......+.++.||++||++++++.+|++ ++++.. .|+.++..|.+|++|++
T Consensus 3 ~~l~v~~~~--~~~P~~~~~~~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~---- 67 (237)
T 3kzg_A 3 LNLTIGTSK--FNPPFEVWSGNNSSLYGFDIDLMQEICRRLHAT--CTFEAY-------IFDDLFPALKNREVDLV---- 67 (237)
T ss_dssp CEEEEEEES--EETTTEECCCTTSCCBSHHHHHHHHHHHHTTCE--EEEEEE-------CGGGHHHHHHTTSSSEE----
T ss_pred ceEEEEECC--CCCCeEEEeCCCCCEeeehHHHHHHHHHHhCCc--eEEEEc-------CHHHHHHHHhCCCCCEE----
Confidence 568888853 366666541235579999999999999999999 888887 79999999999999998
Q ss_pred cceeeeEEEEeeCc----eeeecccc
Q 008205 550 FNLVILFAILANGG----FLVPCRSM 571 (574)
Q Consensus 550 ~~~~~~~~~~~~~~----~~v~f~~~ 571 (574)
+++++++++|+ |+.|++..
T Consensus 68 ---~~~~~~~~~r~~~~~fs~p~~~~ 90 (237)
T 3kzg_A 68 ---IASMIITDERKKHFIFSLPYMES 90 (237)
T ss_dssp ---CSSCBCCTTGGGTCEECCCSBCC
T ss_pred ---EEccccChhHhccceeeeeeeec
Confidence 88899999998 66666653
No 52
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=98.23 E-value=7.8e-05 Score=71.20 Aligned_cols=208 Identities=11% Similarity=0.009 Sum_probs=123.7
Q ss_pred CeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHH
Q 008205 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI 109 (574)
Q Consensus 31 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 109 (574)
...+||+++|.. ..+......+++.+.++. |+++.+ .+...++....+....++++++.+||.......
T Consensus 6 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~ 75 (289)
T 1dbq_A 6 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQK--------GYTLIL--GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP 75 (289)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEEECSCCC
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCeEEE--EcCCCChHHHHHHHHHHHhCCCCEEEEEeccCC
Confidence 456899999864 333334566666666653 455544 566667766666667777888888775322211
Q ss_pred HHHHHHhhcc-CCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcC--CCCcchHHHHH
Q 008205 110 AHLVSHIANE-FQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD--DHGRNGIAALG 186 (574)
Q Consensus 110 ~~~va~~~~~-~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~--~~g~~~~~~l~ 186 (574)
. .+...+.. .++|+|......+ +. ++...+.++....+..+++.+...|.++++++.... .......+.++
T Consensus 76 ~-~~~~~l~~~~~iPvV~~~~~~~---~~--~~~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~ 149 (289)
T 1dbq_A 76 E-PLLAMLEEYRHIPMVVMDWGEA---KA--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFM 149 (289)
T ss_dssp H-HHHHHHHHTTTSCEEEEECSSC---CS--SSCEEEEECHHHHHHHHHHHHHHTTCCSEEEECCC------CHHHHHHH
T ss_pred H-HHHHHHHhccCCCEEEEccCCC---cc--CcCCEEEeCcHHHHHHHHHHHHHCCCCeEEEEecCCccccHHHHHHHHH
Confidence 1 22333333 7999998754322 11 223345667777778888888778999999997543 34566788899
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEE
Q 008205 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWI 255 (574)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i 255 (574)
+.+++.|+.+..........+..+....++++.+. +.+.|+ +.+...+..+++++++.|+..++-+-|
T Consensus 150 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~vP~di~v 219 (289)
T 1dbq_A 150 KAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVF-CGGDIMAMGALCAADEMGLRVPQDVSL 219 (289)
T ss_dssp HHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEE-ESCHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHCCCCCChHHeEeCCCCHHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 99999887543211111112333344455554432 455544 455677888999999999865443333
No 53
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=98.21 E-value=4.7e-07 Score=84.14 Aligned_cols=84 Identities=18% Similarity=0.215 Sum_probs=68.8
Q ss_pred CCceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhccccccccc
Q 008205 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKI 548 (574)
Q Consensus 469 ~~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~ 548 (574)
.++++|++.. .|+||.... .+.++.||++||++++++.+|++ ++++.. .|+.++..|.+|++|++
T Consensus 14 ~~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~--- 78 (239)
T 3kbr_A 14 SGVLRVATTG--DYKPFSYRT-EEGGYAGFDVDMAQRLAESLGAK--LVVVPT-------SWPNLMRDFADDRFDIA--- 78 (239)
T ss_dssp HTEEEEEECS--EETTTEEEC-TTSCEESHHHHHHHHHHHHTTCE--EEEEEC-------CTTTHHHHHHTTCCSEE---
T ss_pred CCeEEEEECC--CCCCeeEEC-CCCCEEeehHHHHHHHHHHHCCc--eEEEEe-------CHHHHHHHHHCCCcCEE---
Confidence 3668888843 456665432 35579999999999999999998 888887 89999999999999999
Q ss_pred ccceeeeEEEEeeCc----eeeecccc
Q 008205 549 FFNLVILFAILANGG----FLVPCRSM 571 (574)
Q Consensus 549 ~~~~~~~~~~~~~~~----~~v~f~~~ 571 (574)
++++++|++|+ |+.|++..
T Consensus 79 ----~~~~~~t~~r~~~~~fs~p~~~~ 101 (239)
T 3kbr_A 79 ----MSGISINLERQRQAYFSIPYLRD 101 (239)
T ss_dssp ----CSSCBCCHHHHTTCEECSCSEEE
T ss_pred ----EeCCcCCHHHcCccccchHHhcc
Confidence 88899999998 66666653
No 54
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=98.21 E-value=0.00018 Score=69.15 Aligned_cols=211 Identities=9% Similarity=-0.056 Sum_probs=124.4
Q ss_pred CeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEE-cCCChH
Q 008205 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAII-GPQFSV 108 (574)
Q Consensus 31 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii-Gp~~s~ 108 (574)
+..+||++.|.. ..+......+++.+.++. |+++.+ +.++..++....+.+..++.+++.+|| .|..+.
T Consensus 3 ~~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~--------g~~~~~-~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~ 73 (303)
T 3d02_A 3 AEKTVVNISKVDGMPWFNRMGEGVVQAGKEF--------NLNASQ-VGPSSTDAPQQVKIIEDLIARKVDAITIVPNDAN 73 (303)
T ss_dssp -CEEEEEECSCSSCHHHHHHHHHHHHHHHHT--------TEEEEE-ECCSSSCHHHHHHHHHHHHHTTCSEEEECCSCHH
T ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHHc--------CCEEEE-ECCCCCCHHHHHHHHHHHHHcCCCEEEEecCChH
Confidence 457899999864 333345566666666653 344432 233556777666677788888898866 455444
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHH-cCCe-EEEEEEEcCC--CCcchHHH
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDY-FGWR-NVIALYVDDD--HGRNGIAA 184 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~-~~W~-~v~ii~~~~~--~g~~~~~~ 184 (574)
........+...++|+|...... ... +.+..+...+...+..+++.+.. .|.+ +++++..... ......+.
T Consensus 74 ~~~~~~~~~~~~~ipvV~~~~~~--~~~---~~~~~v~~d~~~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~g 148 (303)
T 3d02_A 74 VLEPVFKKARDAGIVVLTNESPG--QPS---ANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADL 148 (303)
T ss_dssp HHHHHHHHHHHTTCEEEEESCTT--CTT---CSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEecCC--CCC---CceEEEecCHHHHHHHHHHHHHHHhCcCceEEEEecCCCCccHHHHHHH
Confidence 43344455667899999875431 111 33455667777777888887665 8887 9998874432 23345677
Q ss_pred HHHHHhhcCcEEEEEeec-CCCCChhhHHHHHHHhhcCCCeE-EEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 185 LGDKLAEKRCRLSHKVPL-SPKGSRNQIIDTLLTVSSMMSRI-LILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 185 l~~~~~~~g~~v~~~~~~-~~~~~~~~~~~~l~~ik~~~~~v-iil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
+++.+++.+..+...... ....+..+....++++....+++ .|++.+...+..+++++++.|+. .+...+.
T Consensus 149 f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~-~dv~vig 221 (303)
T 3d02_A 149 LVKYQKEHYPDMHEVTRRMPVAESVDDSRRTTLDLMKTYPDLKAVVSFGSNGPIGAGRAVKEKRAK-NKVAVYG 221 (303)
T ss_dssp HHHHHHHHCTTEEESSSCBSCTTCHHHHHHHHHHHHHHCTTEEEEEESSTTHHHHHHHHHHHTTCT-TTCEEEE
T ss_pred HHHHHHhhCCCCEEEEeecCCCCCHHHHHHHHHHHHHhCCCCCEEEEeCCcchhHHHHHHHhcCCC-CCeEEEE
Confidence 888888665323221111 21223344445555544433332 23334556777889999999976 3333443
No 55
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=98.14 E-value=7.5e-07 Score=83.13 Aligned_cols=84 Identities=19% Similarity=0.216 Sum_probs=69.0
Q ss_pred CCceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhccccccccc
Q 008205 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKI 548 (574)
Q Consensus 469 ~~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~ 548 (574)
.++|+|++. ..++|+.... .+.++.||++||++++++.+|++ ++++.. .|..++..|.+|++|++
T Consensus 4 ~~~l~v~~~--~~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~--- 68 (245)
T 3k4u_A 4 RGELRVGLE--PGYLPFEMKD-KKGNVIGFDVDLAREMAKAMGVK--LKLVPT-------SWDGLIPGLVTEKFDII--- 68 (245)
T ss_dssp CSEEEEEEC--TTSTTTCEEE-TTTEEESHHHHHHHHHHHHHTCE--EEEEEC-------CGGGHHHHHHTTSCSEE---
T ss_pred CCeEEEEEC--CCcCCeeEEC-CCCCCccchHHHHHHHHHHhCCe--EEEEEc-------cHHHHHHHHhCCCcCEE---
Confidence 366888886 2456665432 35579999999999999999999 888887 79999999999999998
Q ss_pred ccceeeeEEEEeeCc----eeeecccc
Q 008205 549 FFNLVILFAILANGG----FLVPCRSM 571 (574)
Q Consensus 549 ~~~~~~~~~~~~~~~----~~v~f~~~ 571 (574)
+++++++++|+ |+.|++..
T Consensus 69 ----~~~~~~t~~r~~~~~~s~p~~~~ 91 (245)
T 3k4u_A 69 ----ISGMTISQERNLRVNFVEPYIVV 91 (245)
T ss_dssp ----CSSCBCCHHHHTTSEECSCSEEE
T ss_pred ----EecCcCCHHHHhhcCcchhhhee
Confidence 78899999997 77777654
No 56
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=98.12 E-value=1.4e-06 Score=81.59 Aligned_cols=82 Identities=17% Similarity=0.308 Sum_probs=67.6
Q ss_pred CCceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhccccccccc
Q 008205 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKI 548 (574)
Q Consensus 469 ~~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~ 548 (574)
.++++|++.. .|+||... .+.++.||++||++++++.+|++ ++++.. .|..++..|.+|++|++
T Consensus 23 ~~~l~v~~~~--~~~P~~~~--~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~--- 86 (249)
T 4f3p_A 23 AKELVVGTDT--SFMPFEFK--QGDKYVGFDLDLWAEIAKGAGWT--YKIQPM-------DFAGLIPALQTQNIDVA--- 86 (249)
T ss_dssp -CCEEEEEES--CBTTTBEE--ETTEEESHHHHHHHHHHHHHTCC--EEEEEE-------CGGGHHHHHHTTSCSEE---
T ss_pred CceEEEEeCC--CCCCeEEe--cCCeEEEEhHHHHHHHHHHcCCc--eEEEec-------CHHHHHHHHHCCCCCEE---
Confidence 4778998852 35666543 35579999999999999999999 888887 79999999999999999
Q ss_pred ccceeeeEEEEeeCc----eeeeccc
Q 008205 549 FFNLVILFAILANGG----FLVPCRS 570 (574)
Q Consensus 549 ~~~~~~~~~~~~~~~----~~v~f~~ 570 (574)
+++++++++|+ |+.|++.
T Consensus 87 ----~~~~~~~~~r~~~~~~s~p~~~ 108 (249)
T 4f3p_A 87 ----LSGMTIKEERRKAIDFSDPYYD 108 (249)
T ss_dssp ----EEEEECCHHHHTTEEECSCCEE
T ss_pred ----EeccccCHHHHcCcceecceee
Confidence 88999999998 5556554
No 57
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=98.11 E-value=2e-06 Score=80.99 Aligned_cols=83 Identities=16% Similarity=0.231 Sum_probs=68.4
Q ss_pred CCceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhccccccccc
Q 008205 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKI 548 (574)
Q Consensus 469 ~~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~ 548 (574)
.++++|++.. .|+|+.... .+..+.||++|+++++++.+|++ ++++.. .|+.++..|.+|++|++
T Consensus 28 ~~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~--- 92 (259)
T 4dz1_A 28 GRTLNVAVSP--ASPPMLFKS-ADGKLQGIDLELFSSYCQSRHCK--LNITEY-------AWDGMLGAVASGQADVA--- 92 (259)
T ss_dssp TCEEEEEECC--CBTTTBEEC-TTCCEESHHHHHHHHHHHHHTCE--EEEEEC-------CHHHHHHHHHHTSSSEE---
T ss_pred CCeEEEEECC--CCCCeEEEC-CCCCEEEeHHHHHHHHHHHhCCe--EEEEEc-------CHHHHHHHHhCCCCCEE---
Confidence 4678888843 355655433 35579999999999999999999 888887 89999999999999999
Q ss_pred ccceeeeEEEEeeCc----eeeeccc
Q 008205 549 FFNLVILFAILANGG----FLVPCRS 570 (574)
Q Consensus 549 ~~~~~~~~~~~~~~~----~~v~f~~ 570 (574)
++++++|++|+ |+.|++.
T Consensus 93 ----~~~~~~t~~r~~~~~fs~p~~~ 114 (259)
T 4dz1_A 93 ----FSGISITDKRKKVIDFSEPYYI 114 (259)
T ss_dssp ----EEEEECCHHHHTTEEECCCSEE
T ss_pred ----EECCcCCHHHhhccccccchhh
Confidence 88999999998 6666654
No 58
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=98.10 E-value=0.0002 Score=68.97 Aligned_cols=188 Identities=9% Similarity=0.098 Sum_probs=115.1
Q ss_pred CCeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHH
Q 008205 30 PPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI 109 (574)
Q Consensus 30 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 109 (574)
.++.+||++.+.+...-.....+++ +.+++.+.+ .|.++.+.+.|+..++....+.+..+.++++.+||..... .
T Consensus 6 ~~t~~IGvi~~~~~p~~~~~~~gi~---~~l~~~Gy~-~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~~-~ 80 (302)
T 2qh8_A 6 AKTAKVAVSQIVEHPALDATRQGLL---DGLKAKGYE-EGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIATP-T 80 (302)
T ss_dssp -CCEEEEEEESSCCHHHHHHHHHHH---HHHHHTTCC-BTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEESHH-H
T ss_pred cCCcEEEEEEeccChhHHHHHHHHH---HHHHHcCCC-CCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECChH-H
Confidence 3678999884433322223344443 344444433 3568888889999998888777888888899988875433 2
Q ss_pred HHHHHHhhccCCccEEecccCCCCcC------CCCCCceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEcCC-CCcc
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLS------SLQYPFFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVDDD-HGRN 180 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls------~~~~~~~~r~~ps~~~~~~ai~~ll~~~--~W~~v~ii~~~~~-~g~~ 180 (574)
...+.. ...++|+|.....++... ....+.+..+.- .......++++... |.+++++|+.... .+..
T Consensus 81 ~~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~~--~~~~~~~~~~l~~~~Pg~~~I~~i~~~~~~~~~~ 156 (302)
T 2qh8_A 81 AQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSD--LSPVEQHVELIKEILPNVKSIGVVYNPGEANAVS 156 (302)
T ss_dssp HHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEEC--CCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHHH
T ss_pred HHHHHh--cCCCcCEEEEecCCHhhcCccccccCCCCCEEEEEC--CcCHHHHHHHHHHhCCCCcEEEEEecCCCcchHH
Confidence 233333 267999998654443210 011133333321 11234556776666 9999999996543 2455
Q ss_pred hHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC
Q 008205 181 GIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (574)
Q Consensus 181 ~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~ 231 (574)
..+.+++.+++.|+.+.... +. +..+....++++.. +++.|++..+
T Consensus 157 r~~g~~~al~~~gi~~~~~~-~~---~~~~~~~~~~~l~~-~~dai~~~~D 202 (302)
T 2qh8_A 157 LMELLKLSAAKHGIKLVEAT-AL---KSADVQSATQAIAE-KSDVIYALID 202 (302)
T ss_dssp HHHHHHHHHHHTTCEEEEEE-CS---SGGGHHHHHHHHGG-GCSEEEECSC
T ss_pred HHHHHHHHHHHcCCEEEEEe-cC---ChHHHHHHHHHHhc-cCCEEEECCc
Confidence 67888999999998876543 22 34566677777763 5676666443
No 59
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=98.09 E-value=2e-06 Score=78.96 Aligned_cols=82 Identities=15% Similarity=0.177 Sum_probs=66.2
Q ss_pred CceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhcccccccccc
Q 008205 470 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKIF 549 (574)
Q Consensus 470 ~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~~ 549 (574)
++++|++.. .|+|+.... .+.++.||++|+++++++.+|++ ++++.. .|..++..|.+|++|++
T Consensus 2 ~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~---- 65 (227)
T 3tql_A 2 DTIKFATEA--TYPPYVYMG-PSGQVEGFGADIVKAVCKQMQAV--CTISNQ-------PWDSLIPSLKLGKFDAL---- 65 (227)
T ss_dssp CEEEEEECS--CBTTTBEEC---CCEESHHHHHHHHHHHHTTCE--EEEEEC-------CHHHHHHHHHHTSCSEE----
T ss_pred ceEEEEEcC--CCCCeeEEC-CCCCcccchHHHHHHHHHHhCCe--EEEEeC-------CHHHHHHHHhCCCCCEE----
Confidence 467888843 366665432 35579999999999999999999 888887 89999999999999999
Q ss_pred cceeeeEEEEeeCc----eeeeccc
Q 008205 550 FNLVILFAILANGG----FLVPCRS 570 (574)
Q Consensus 550 ~~~~~~~~~~~~~~----~~v~f~~ 570 (574)
+++++.+++|+ |+.|++.
T Consensus 66 ---~~~~~~~~~r~~~~~~s~p~~~ 87 (227)
T 3tql_A 66 ---FGGMNITTARQKEVDFTDPYYT 87 (227)
T ss_dssp ---CSSCBCCTTGGGTEEECSCSBC
T ss_pred ---EecCcCCHhHHhheecccceec
Confidence 78889999998 6666654
No 60
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=98.09 E-value=0.00022 Score=68.03 Aligned_cols=209 Identities=6% Similarity=-0.018 Sum_probs=125.3
Q ss_pred CeEEEEEEeccCC---ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCC-
Q 008205 31 PVLNIGAVFALNS---TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQF- 106 (574)
Q Consensus 31 ~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~- 106 (574)
.+.+||++.|... .+......+++.+.++. |+++.+...+...++....+.+..++++++.+||....
T Consensus 4 ~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 75 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEY--------EIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAAD 75 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSC
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHc--------CCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 3457999998532 33334556666666654 45555443333556666666677788889988776433
Q ss_pred hHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHH-cC-CeEEEEEEEcCC--CCcchH
Q 008205 107 SVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDY-FG-WRNVIALYVDDD--HGRNGI 182 (574)
Q Consensus 107 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~-~~-W~~v~ii~~~~~--~g~~~~ 182 (574)
..........+...++|+|......+. .+.+..+.+.....+..+++.+.. .| .++++++..... ......
T Consensus 76 ~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~ 150 (289)
T 3brs_A 76 YEKTYDAAKEIKDAGIKLIVIDSGMKQ-----DIADITVATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDRE 150 (289)
T ss_dssp TTTTHHHHTTTGGGTCEEEEESSCCSS-----CCCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHH
T ss_pred hHHhHHHHHHHHHCCCcEEEECCCCCC-----CcceEEEeeChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHH
Confidence 322223334455679999987543221 123456677777778888887666 46 999999985432 234566
Q ss_pred HHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 183 AALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 183 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
+.+++.+++.|..+... +....+..+....++++... ..+.| ++.+...+..+++++++.|+. .+...+.
T Consensus 151 ~gf~~~l~~~g~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~g~~~al~~~G~~-~di~vvg 222 (289)
T 3brs_A 151 EGLKIGLSDDSNKIEAI--YYCDSNYDKAYDGTVELLTKYPDISVM-VGLNQYSATGAARAIKDMSLE-AKVKLVC 222 (289)
T ss_dssp HHHHHHHGGGGGGEEEE--EECTTCHHHHHHHHHHHHHHCTTEEEE-EESSHHHHHHHHHHHHHTTCT-TTSEEEE
T ss_pred HHHHHHHHhCCCcEEee--ecCCCCHHHHHHHHHHHHHhCCCceEE-EECCCcchHHHHHHHHhcCCC-CCEEEEE
Confidence 78888888888654322 11112334444445554332 34433 345566788889999999986 3444443
No 61
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=98.09 E-value=3.3e-05 Score=73.83 Aligned_cols=206 Identities=11% Similarity=-0.019 Sum_probs=120.6
Q ss_pred CCeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHH
Q 008205 30 PPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI 109 (574)
Q Consensus 30 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 109 (574)
....+||+++|.+..+......+++.+.++ . |+++. +.++..++....+....++.+++.+||.......
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~gi~~~~~~---~-----g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 75 (288)
T 2qu7_A 6 GRSNIIAFIVPDQNPFFTEVLTEISHECQK---H-----HLHVA--VASSEENEDKQQDLIETFVSQNVSAIILVPVKSK 75 (288)
T ss_dssp -CEEEEEEEESSCCHHHHHHHHHHHHHHGG---G-----TCEEE--EEECTTCHHHHHHHHHHHHHTTEEEEEECCSSSC
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHHHHHH---C-----CCEEE--EEeCCCCHHHHHHHHHHHHHcCccEEEEecCCCC
Confidence 456789999987221222333444433332 1 45554 4556667766666677778889999886443322
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALGD 187 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~~ 187 (574)
...+..+ .++|+|......+ + +.+..+.+++...+..+++.+...|.++++++..... ......+.+++
T Consensus 76 ~~~~~~l---~~iPvV~~~~~~~---~---~~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 146 (288)
T 2qu7_A 76 FQMKREW---LKIPIMTLDRELE---S---TSLPSITVDNEEAAYIATKRVLESTCKEVGLLLANPNISTTIGRKNGYNK 146 (288)
T ss_dssp CCCCGGG---GGSCEEEESCCCS---S---CCCCEEEECHHHHHHHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred hHHHHHh---cCCCEEEEecccC---C---CCCCEEEECcHHHHHHHHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 1222222 7899998754322 1 2234455677777788888887789999999985532 23456778888
Q ss_pred HHhhcCcEEEEEeec--CCCC----ChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEE
Q 008205 188 KLAEKRCRLSHKVPL--SPKG----SRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWI 255 (574)
Q Consensus 188 ~~~~~g~~v~~~~~~--~~~~----~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i 255 (574)
.+++.|+.+.....+ .... +..+-...++++.+.+++.|+ +.+...+..+++++++.|+..++-+.|
T Consensus 147 ~l~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~v 219 (288)
T 2qu7_A 147 AISEFDLNVNPSLIHYSDQQLGTNAQIYSGYEATKTLLSKGIKGIV-ATNHLLLLGALQAIKESEKEIKKDVII 219 (288)
T ss_dssp HHHHTTCCCCGGGEEECCSSCSHHHHHHHHHHHHHHHHHTTCCEEE-ECSHHHHHHHHHHHHHSSCCBTTTBEE
T ss_pred HHHHcCCCCCcceEEeccCCccccCCHHHHHHHHHHHHhcCCCEEE-ECCcHHHHHHHHHHHHhCCCCCCceEE
Confidence 898888754311111 1111 222223334443333666555 445666788899999999865443333
No 62
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=98.08 E-value=9.3e-07 Score=82.42 Aligned_cols=83 Identities=12% Similarity=0.173 Sum_probs=68.5
Q ss_pred CCceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCC-CCcCeEEEECCCCCCCCChHHHHHHhhhcccccccc
Q 008205 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLP-YAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKK 547 (574)
Q Consensus 469 ~~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~-f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~ 547 (574)
.++++|++.. .|+||... .+.++.||++||++++++.+| ++ ++++.. .|+.++..|.+|++|++
T Consensus 7 ~~~l~v~~~~--~~~P~~~~--~~g~~~G~~~dl~~~i~~~~g~~~--~~~~~~-------~~~~~~~~l~~g~~D~~-- 71 (246)
T 4eq9_A 7 KKEIIVATNG--SPRPFIYE--ENGELTGYEIEVVRAIFKDSDKYD--VKFEKT-------EWSGVFAGLDADRYNMA-- 71 (246)
T ss_dssp CEEEEEEECC--CSTTTSEE--ETTEEESHHHHHHHHHHTTCSSEE--EEEEEC-------CHHHHHHHHHTTSCSEE--
T ss_pred CCEEEEEeCC--CcCCeEEc--CCCCCcccHHHHHHHHHHHcCCce--EEEEeC-------CHHHHHHHHhCCCcCEE--
Confidence 3568888853 45666542 355799999999999999999 99 888888 89999999999999999
Q ss_pred cccceeeeEEEEeeCc----eeeecccc
Q 008205 548 IFFNLVILFAILANGG----FLVPCRSM 571 (574)
Q Consensus 548 ~~~~~~~~~~~~~~~~----~~v~f~~~ 571 (574)
+++++++++|+ |+.|++..
T Consensus 72 -----~~~~~~~~~r~~~~~~s~p~~~~ 94 (246)
T 4eq9_A 72 -----VNNLSYTKERAEKYLYAAPIAQN 94 (246)
T ss_dssp -----CSSCCCCHHHHHHEEECCCCEEC
T ss_pred -----ecccccChhhhhceeeccceecC
Confidence 88889999997 66666654
No 63
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=98.08 E-value=1.5e-06 Score=80.61 Aligned_cols=83 Identities=16% Similarity=0.196 Sum_probs=67.0
Q ss_pred CceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhcccccccccc
Q 008205 470 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKIF 549 (574)
Q Consensus 470 ~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~~ 549 (574)
++++|++.. .|+|+.... .+.++.||++||++++++.+|++ ++++.. .|+.++..|.+|++|++
T Consensus 4 ~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~---- 67 (239)
T 1lst_A 4 QTVRIGTDT--TYAPFSSKD-AKGEFIGFDIDLGNEMCKRMQVK--CTWVAS-------DFDALIPSLKAKKIDAI---- 67 (239)
T ss_dssp SEEEEEECS--CBTTTBEEC-TTCCEESHHHHHHHHHHHHHTCE--EEEEEC-------CGGGHHHHHHTTSCSEE----
T ss_pred ceEEEEECC--CcCCeeEEC-CCCCEeeEHHHHHHHHHHHHCCe--EEEEeC-------CHHHHHHHHhCCCCCEE----
Confidence 568888732 456655432 34579999999999999999998 888877 89999999999999999
Q ss_pred cceeeeEEEEeeCc----eeeecccc
Q 008205 550 FNLVILFAILANGG----FLVPCRSM 571 (574)
Q Consensus 550 ~~~~~~~~~~~~~~----~~v~f~~~ 571 (574)
+++++++++|+ |+.|++..
T Consensus 68 ---~~~~~~t~~r~~~~~~s~p~~~~ 90 (239)
T 1lst_A 68 ---ISSLSITDKRQQEIAFSDKLYAA 90 (239)
T ss_dssp ---CSSCBCCHHHHHHCEECSCSBCC
T ss_pred ---EECcCcCHHHhhceeecccceeC
Confidence 77788999997 66666653
No 64
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=98.08 E-value=1.4e-06 Score=82.74 Aligned_cols=83 Identities=12% Similarity=0.142 Sum_probs=67.0
Q ss_pred CceEEeccCccccccceeccCC--CcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhcccccccc
Q 008205 470 RHLRIGVPSQVIYPEFVAQGKG--TDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKK 547 (574)
Q Consensus 470 ~~~~v~~~~~~~~~~~~~~~~g--~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~ 547 (574)
++|+|++.. .|+||.....+ ..++.||++|+++++++.+|++ ++++.. .|+.++..|.+|++|++
T Consensus 21 ~~l~v~~~~--~~pP~~~~~~~~~~g~~~G~~~dl~~~i~~~~g~~--v~~~~~-------~~~~~~~~l~~G~~D~~-- 87 (271)
T 2iee_A 21 GKIVVATSG--TLYPTSYHDTDSGSDKLTGYEVEVVREAAKRLGLK--VEFKEM-------GIDGMLTAVNSGQVDAA-- 87 (271)
T ss_dssp TEEEEEECS--CBTTTBEEETTTTCCEEECHHHHHHHHHHHHTTCE--EEEEEC-------CSTTHHHHHHHTSSSEE--
T ss_pred CeEEEEECC--CCCCeeEeCCCCCCCCceeeHHHHHHHHHHHcCCe--EEEEEC-------CHHHHHHHHHCCCcCEE--
Confidence 568888852 46666543222 2689999999999999999998 888887 79999999999999999
Q ss_pred cccceeeeEEEEeeCc----eeeeccc
Q 008205 548 IFFNLVILFAILANGG----FLVPCRS 570 (574)
Q Consensus 548 ~~~~~~~~~~~~~~~~----~~v~f~~ 570 (574)
++++++|++|+ |+.|++.
T Consensus 88 -----~~~~~~t~~r~~~~~fs~p~~~ 109 (271)
T 2iee_A 88 -----ANDIDVTKDREEKFAFSTPYKY 109 (271)
T ss_dssp -----CSSCBCCHHHHTTEEECCCSEE
T ss_pred -----EeCCcCChhhccceEEeeccee
Confidence 77788999997 6666653
No 65
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=98.08 E-value=0.00028 Score=67.67 Aligned_cols=203 Identities=9% Similarity=-0.013 Sum_probs=130.3
Q ss_pred eEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC--CCHHHHHHHHHHhHhcCcEEEE-cCCCh
Q 008205 32 VLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTN--YSRFLGMVEALTLLENETVAII-GPQFS 107 (574)
Q Consensus 32 ~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~--~~~~~a~~~~~~l~~~~v~aii-Gp~~s 107 (574)
.++||++.|.. ..+......+++.+.++. |+++. +.+.. .++..-.+.+..++.+++.+|| .|...
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~ 72 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEEL--------KVDLQ--ILAPPGANDVPKQVQFIESALATYPSGIATTIPSD 72 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHH--------TCEEE--EECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCS
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHh--------CcEEE--EECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCH
Confidence 47899999875 333345566777766663 45544 44443 5777777777888888888877 45554
Q ss_pred HHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcC--CeEEEEEEEcCC--CCcchHH
Q 008205 108 VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFG--WRNVIALYVDDD--HGRNGIA 183 (574)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~--W~~v~ii~~~~~--~g~~~~~ 183 (574)
.........+...+||+|......+.. ...+.+..+.+.....+..+++.+...+ -++++++..... ......+
T Consensus 73 ~~~~~~~~~~~~~giPvV~~~~~~~~~--~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~ 150 (297)
T 3rot_A 73 TAFSKSLQRANKLNIPVIAVDTRPKDK--TKNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAY 150 (297)
T ss_dssp STTHHHHHHHHHHTCCEEEESCCCSCT--TTSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccc--cccCcceEEccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHH
Confidence 443444556677799999875433221 1113345566778878888888877777 899999975432 2335678
Q ss_pred HHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCC
Q 008205 184 ALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMES 250 (574)
Q Consensus 184 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~ 250 (574)
.+++.+++.|+++.... .. .........++++... +.+. |++.+...+..+++++++.|+..+
T Consensus 151 Gf~~~l~~~g~~~~~~~-~~--~~~~~~~~~~~~~l~~~~~~~a-i~~~~d~~A~g~~~al~~~g~~vP 215 (297)
T 3rot_A 151 GIKTILQDKGIFFEELD-VG--TDPNQVQSRVKSYFKIHPETNI-IFCLTSQALDPLGQMLLHPDRYDF 215 (297)
T ss_dssp HHHHHHHHTTCEEEEEE-CC--SCHHHHHHHHHHHHHHCTTCCE-EEESSHHHHHHHHHHHHSHHHHTC
T ss_pred HHHHHHHhcCCeEEEee-cC--CChHHHHHHHHHHHHhCCCCCE-EEEcCCcchHHHHHHHHhcCCccC
Confidence 88999999998876543 11 2334444555553322 3444 344566677888898888887543
No 66
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=98.07 E-value=1.5e-06 Score=82.24 Aligned_cols=84 Identities=12% Similarity=0.107 Sum_probs=68.6
Q ss_pred CCceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhccccccccc
Q 008205 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKI 548 (574)
Q Consensus 469 ~~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~ 548 (574)
.++++|++.. .|+||.... .+..+.||++||++++++.+|++ ++++.. .|..++..|.+|++|++
T Consensus 20 ~~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~--- 84 (268)
T 3hv1_A 20 EKKIKIGFDA--TFVPMGYEE-KDGSYIGFDIDLANAVFKLYGID--VEWQAI-------DWDMKETELKNGTIDLI--- 84 (268)
T ss_dssp HTEEEEEECT--EETTTEEEC-TTSCEECHHHHHHHHHHHTTTCE--EEEEEC-------CGGGHHHHHHHTSCSEE---
T ss_pred CCcEEEEECC--CCCCceEEC-CCCCEEEehHHHHHHHHHHhCCc--EEEEEC-------CHHHHHHHHHCCCCCEE---
Confidence 3668888853 456665432 35579999999999999999998 888887 79999999999999999
Q ss_pred ccceeeeEEEEeeCc----eeeecccc
Q 008205 549 FFNLVILFAILANGG----FLVPCRSM 571 (574)
Q Consensus 549 ~~~~~~~~~~~~~~~----~~v~f~~~ 571 (574)
+++++++++|+ |+.|++..
T Consensus 85 ----~~~~~~t~~r~~~~~fs~p~~~~ 107 (268)
T 3hv1_A 85 ----WNGYSVTDERKQSADFTEPYMVN 107 (268)
T ss_dssp ----CSSCBCCHHHHTTCEECCCCEEE
T ss_pred ----EecCccCHHHHhcCcCcHHHeeC
Confidence 78899999997 66666543
No 67
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=98.06 E-value=0.00065 Score=66.28 Aligned_cols=205 Identities=11% Similarity=0.010 Sum_probs=125.1
Q ss_pred CeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcC--cEEEEcCCCh
Q 008205 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENE--TVAIIGPQFS 107 (574)
Q Consensus 31 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~--v~aiiGp~~s 107 (574)
...+||+++|.. ..+-.....+++.+.++. |+++ .+.++..++....+.+..+++++ +.+||.....
T Consensus 4 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~l--~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~ 73 (332)
T 2rjo_A 4 GQTTLACSFRSLTNPYYTAFNKGAQSFAKSV--------GLPY--VPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPND 73 (332)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TCCE--EEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSS
T ss_pred CccEEEEEecCCCcHHHHHHHHHHHHHHHHc--------CCEE--EEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCC
Confidence 346899999853 222234455555555542 3444 44456667766666677777788 9998864433
Q ss_pred -HHHHHHHHhhccCCccEEecccCCCCcCCCCC--CceEEecCChHHHHHHHHHHHHH--cCCeEEEEEEEcCC--CCcc
Q 008205 108 -VIAHLVSHIANEFQVPLLSFAATDPSLSSLQY--PFFVRTTQSDLYQMAAIADIVDY--FGWRNVIALYVDDD--HGRN 180 (574)
Q Consensus 108 -~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~--~~~~r~~ps~~~~~~ai~~ll~~--~~W~~v~ii~~~~~--~g~~ 180 (574)
.........+...+||+|......+......+ +.+..+.++....+..+++.|.. .|.+++++|..... ....
T Consensus 74 ~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~~~ 153 (332)
T 2rjo_A 74 SADARVIVEACSKAGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPAIE 153 (332)
T ss_dssp HHHHHHHHHHHHHHTCEEEEESCCCTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEEECCCCCcccchhcccceeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHHH
Confidence 32223344455679999987543221110111 34566777888788888887766 69999999985532 2345
Q ss_pred hHHHHHHHHhhc-CcEEEEEeecCCCCChhhHHHHHHHhhcC---CCeEEEEEeChHHHHHHHHHHHHCCCC
Q 008205 181 GIAALGDKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSM---MSRILILHTYDIWGLEVLNAAKHLRMM 248 (574)
Q Consensus 181 ~~~~l~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~ik~~---~~~viil~~~~~~~~~il~~a~~~gm~ 248 (574)
..+.+++.+++. |+.+.....- ..+..+....++++.+. ..+.| ++.+...+..+++++++.|+.
T Consensus 154 R~~Gf~~al~~~pgi~~~~~~~~--~~~~~~~~~~~~~ll~~~~~~~~aI-~~~nd~~A~g~~~al~~~G~~ 222 (332)
T 2rjo_A 154 RKAGLDAALKKFPGIQLLDFQVA--DWNSQKAFPIMQAWMTRFNSKIKGV-WAANDDMALGAIEALRAEGLA 222 (332)
T ss_dssp HHHHHHHHHHTCTTEEEEEEEEC--TTCHHHHHHHHHHHHHHHGGGEEEE-EESSHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHhCCCcEEEeeccC--CCCHHHHHHHHHHHHHhcCCCeeEE-EECCCchHHHHHHHHHHcCCC
Confidence 677888999988 8876543211 12333334445544333 34443 345566788899999999975
No 68
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=98.06 E-value=0.00013 Score=70.26 Aligned_cols=213 Identities=9% Similarity=0.006 Sum_probs=125.5
Q ss_pred CCeEEEEEEeccC--CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEe-cCCCCHHHHHHHHHHhHhcCcEEEEc-CC
Q 008205 30 PPVLNIGAVFALN--STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVH-DTNYSRFLGMVEALTLLENETVAIIG-PQ 105 (574)
Q Consensus 30 ~~~i~IG~l~~~~--~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~-d~~~~~~~a~~~~~~l~~~~v~aiiG-p~ 105 (574)
....+||+++|.. ..+-.....+++.+.++. +|+.+.+... +...++..-.+.+..++.+++.+||- |.
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-------~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 78 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTY-------SDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPT 78 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHT-------GGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCS
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHH-------HhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 4668999999874 322234455555555542 1466666654 33456666566667777888888775 44
Q ss_pred ChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCC--eEEEEEEEcC------CC
Q 008205 106 FSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGW--RNVIALYVDD------DH 177 (574)
Q Consensus 106 ~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W--~~v~ii~~~~------~~ 177 (574)
...........+...+||+|......+.. +.+-.+.+.....+..+++.+...|. ++++++.... ..
T Consensus 79 ~~~~~~~~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~ 153 (304)
T 3gbv_A 79 VPQYTKGFTDALNELGIPYIYIDSQIKDA-----PPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQ 153 (304)
T ss_dssp SGGGTHHHHHHHHHHTCCEEEESSCCTTS-----CCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHH
T ss_pred ChHHHHHHHHHHHHCCCeEEEEeCCCCCC-----CceEEEecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccchh
Confidence 33333344455666799999875433211 12345667777788888888888887 9999998431 12
Q ss_pred CcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHh-hc-CCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEE
Q 008205 178 GRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTV-SS-MMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWI 255 (574)
Q Consensus 178 g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i-k~-~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i 255 (574)
.....+.+++.+++.|..+..........+.......++++ +. ...+.|+...+ . +..+++++++.|+ .+...+
T Consensus 154 ~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d-~-a~g~~~al~~~g~--~di~vi 229 (304)
T 3gbv_A 154 QESREIGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFREHPDVKHGITFNS-K-VYIIGEYLQQRRK--SDFSLI 229 (304)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHHCTTCCEEEESSS-C-THHHHHHHHHTTC--CSCEEE
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHHHhCCCeEEEEEcCc-c-hHHHHHHHHHcCC--CCcEEE
Confidence 34567788888888875332211111011111222333333 22 25666655544 3 7789999999998 444444
Q ss_pred EeC
Q 008205 256 VTD 258 (574)
Q Consensus 256 ~~~ 258 (574)
..+
T Consensus 230 g~d 232 (304)
T 3gbv_A 230 GYD 232 (304)
T ss_dssp EES
T ss_pred EeC
Confidence 443
No 69
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=98.04 E-value=0.00022 Score=68.16 Aligned_cols=206 Identities=10% Similarity=0.042 Sum_probs=122.7
Q ss_pred CCeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChH
Q 008205 30 PPVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSV 108 (574)
Q Consensus 30 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~ 108 (574)
....+||+++|.. ..+......+++.+.++ .|+++.+ .++..++....+....++++++.+||-.....
T Consensus 14 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 83 (289)
T 2fep_A 14 KKTTTVGVIIPDISSIFYSELARGIEDIATM--------YKYNIIL--SNSDQNMEKELHLLNTMLGKQVDGIVFMGGNI 83 (289)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCSCC
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4457899999863 22223444555555544 2465543 45666766656666677778888877533222
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcC-C--CCcchHHHH
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD-D--HGRNGIAAL 185 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~-~--~g~~~~~~l 185 (574)
....+.. +...++|+|......+ . +.+..+...+...+..+++.|...|.+++++|.... . ......+.+
T Consensus 84 ~~~~~~~-l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf 156 (289)
T 2fep_A 84 TDEHVAE-FKRSPVPIVLAASVEE---Q---EETPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGY 156 (289)
T ss_dssp CHHHHHH-HHHSSSCEEEESCCCT---T---CCSCEEECCHHHHHHHHHHHHHHTTCSSEEEEESCTTSHHHHTTHHHHH
T ss_pred CHHHHHH-HHhcCCCEEEEccccC---C---CCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCccccccHHHHHHHH
Confidence 2223333 4567999998754322 1 122345567777778888888778999999998553 2 235577889
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeE
Q 008205 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYV 253 (574)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~ 253 (574)
++.+++.|+.+.....+....+..+-...++++-+. .++.|+ +++...+..+++++++.|+..++-+
T Consensus 157 ~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~G~~vP~di 225 (289)
T 2fep_A 157 KRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAIL-SATDEMALGIIHAAQDQGLSIPEDL 225 (289)
T ss_dssp HHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHHcCCCCChheEeeCCCCHHHHHHHHHHHHcCCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCCe
Confidence 999998886543111111112333344555555443 345444 4566678889999999998654433
No 70
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=98.04 E-value=0.00039 Score=66.21 Aligned_cols=204 Identities=12% Similarity=0.046 Sum_probs=121.4
Q ss_pred CeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHH
Q 008205 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI 109 (574)
Q Consensus 31 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 109 (574)
...+||+++|.. ..+......+++.+.++ .|+++.+ .+...++....+....++++++.+||.......
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 76 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEK--------NGYRILL--CNTESDLARSRSCLTLLSGKMVDGVITMDALSE 76 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHTHHHHTTCCSEEEECCCGGG
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 456899999853 22223444555555444 2465544 455556655555566777789998886443322
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALGD 187 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~~ 187 (574)
...+..+ . .++|+|......+ + +.+..+.......+..+++.+...|-+++++|..... ......+.+++
T Consensus 77 ~~~~~~l-~-~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 148 (285)
T 3c3k_A 77 LPELQNI-I-GAFPWVQCAEYDP---L---STVSSVSIDDVAASEYVVDQLVKSGKKRIALINHDLAYQYAQHRESGYLN 148 (285)
T ss_dssp HHHHHHH-H-TTSSEEEESSCCT---T---SSSCEEECCHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred hHHHHHH-h-cCCCEEEEccccC---C---CCCCEEEEChHHHHHHHHHHHHHcCCCeEEEEeCCCccccHHHHHHHHHH
Confidence 2334443 4 8999998754322 1 1223455667767777888777779999999986543 23456677888
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHH--hhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLT--VSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~--ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
.+++.|+.+. ...-. .+..+-...+++ +.+. .++.|+ +.+...+..+++++++.|+..++-+-|+
T Consensus 149 ~l~~~g~~~~-~~~~~--~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vv 217 (285)
T 3c3k_A 149 RLKFHGLDYS-RISYA--ENLDYMAGKLATFSLLKSAVKPDAIF-AISDVLAAGAIQALTESGLSIPQDVAVV 217 (285)
T ss_dssp HHHHHTCCCC-EEEEC--SSSSHHHHHHHHHHHHSSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHcCCCce-EeecC--CChHHHHHHHHHHHHHcCCCCCeEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 8888887543 11111 122223344555 4333 355544 4556678889999999998655444443
No 71
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=98.04 E-value=0.00045 Score=66.90 Aligned_cols=205 Identities=10% Similarity=-0.032 Sum_probs=120.7
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEe-cCCCCHHHHHHHHHHhHhcCcEEEE-cCCChHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVH-DTNYSRFLGMVEALTLLENETVAII-GPQFSVIA 110 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~-d~~~~~~~a~~~~~~l~~~~v~aii-Gp~~s~~~ 110 (574)
+||++.|.. ..+......+++.+.++. |++ +.+. +...++..-.+.+..++.+++.+|| .|..+...
T Consensus 5 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~--------g~~--~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~ 74 (316)
T 1tjy_A 5 RIAFIPKLVGVGFFTSGGNGAQEAGKAL--------GID--VTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGL 74 (316)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHHH--------TCE--EEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTT
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHh--------CCE--EEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHH
Confidence 699999864 223334556666666654 343 4454 3566777777778888889998855 56555433
Q ss_pred HHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHH---cCCeEEEEEEEcCC--CCcchHHHH
Q 008205 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDY---FGWRNVIALYVDDD--HGRNGIAAL 185 (574)
Q Consensus 111 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~---~~W~~v~ii~~~~~--~g~~~~~~l 185 (574)
..+...+...+||+|.+....+ ... ...+.........+...++.|.. .|-++++++..... ....+.+.+
T Consensus 75 ~~~~~~a~~~gipvV~~d~~~~---~~~-~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~~~r~~g~ 150 (316)
T 1tjy_A 75 CPALKRAMQRGVKILTWDSDTK---PEC-RSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEA 150 (316)
T ss_dssp HHHHHHHHHTTCEEEEESSCCC---GGG-CSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHCcCEEEEecCCCC---CCC-ceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhHHHHHHHH
Confidence 3444556778999998743221 111 12222255666677777776654 46899999985432 234556777
Q ss_pred HHHHhhc--CcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEe
Q 008205 186 GDKLAEK--RCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVT 257 (574)
Q Consensus 186 ~~~~~~~--g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~ 257 (574)
++.+++. ++++.....- ..+..+....++++... +.+.|+ +.+...+.-+++++++.| . .+...+..
T Consensus 151 ~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~~~~~aI~-~~nD~~A~g~~~al~~~G-~-~dv~VvG~ 221 (316)
T 1tjy_A 151 KAKISQEHPGWEIVTTQFG--YNDATKSLQTAEGIIKAYPDLDAII-APDANALPAAAQAAENLK-R-NNLAIVGF 221 (316)
T ss_dssp HHHHHHHCTTEEEEEEEEC--TTCHHHHHHHHHHHHHHCSSCCEEE-ECSTTHHHHHHHHHHHTT-C-CSCEEEEB
T ss_pred HHHHHhhCCCcEEEEeccC--CCCHHHHHHHHHHHHHhCCCCCEEE-ECCCccHHHHHHHHHHcC-C-CCEEEEEe
Confidence 7888765 5555432211 12333444445544332 344443 445566788899999988 5 44444433
No 72
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=98.03 E-value=0.00048 Score=66.31 Aligned_cols=204 Identities=15% Similarity=0.052 Sum_probs=121.1
Q ss_pred EEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCC-ChHHH
Q 008205 33 LNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQ-FSVIA 110 (574)
Q Consensus 33 i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~-~s~~~ 110 (574)
-+||+++|.. ..+......+++.+.++ . |+ +++.+.+...++....+.+..++++++.+||... .....
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~---~-----g~-~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~ 73 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKA---A-----PD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAA 73 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHT---C-----TT-EEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHh---c-----CC-eEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchh
Confidence 4799999864 22222334444444332 2 34 2445566666776666667777888888877633 33323
Q ss_pred HHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHH------------cCCeEEEEEEEcCC--
Q 008205 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDY------------FGWRNVIALYVDDD-- 176 (574)
Q Consensus 111 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~------------~~W~~v~ii~~~~~-- 176 (574)
......+...++|+|......+...-..++.+..+.......+..+++.+.. .|-++++++.....
T Consensus 74 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~ 153 (309)
T 2fvy_A 74 GTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 153 (309)
T ss_dssp HHHHHHHHTTTCCEEEESSCCCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCH
T ss_pred HHHHHHHHHCCCcEEEecCCCCcccccccCccEEEecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCc
Confidence 3334455668999998754321100011245566777787778878887655 68889999985432
Q ss_pred CCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC----CCeEEEEEeChHHHHHHHHHHHHCC
Q 008205 177 HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM----MSRILILHTYDIWGLEVLNAAKHLR 246 (574)
Q Consensus 177 ~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~----~~~viil~~~~~~~~~il~~a~~~g 246 (574)
......+.+++.+++.|+.+.....+....+..+-...++++-.. ..+.|+ +++...+..+++++++.|
T Consensus 154 ~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~-~~~d~~a~g~~~al~~~g 226 (309)
T 2fvy_A 154 DAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVI-ANNDAMAMGAVEALKAHN 226 (309)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEEECTTCHHHHHHHHHHHHTSTTGGGCCEEE-ESSHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhcCCceEEEEEecCCCCHHHHHHHHHHHHHhCCCCCccEEE-ECCchhHHHHHHHHHHcC
Confidence 234567788899998887654322222112333334455554333 345444 456667888999999988
No 73
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=98.02 E-value=0.00016 Score=69.47 Aligned_cols=205 Identities=7% Similarity=-0.090 Sum_probs=125.0
Q ss_pred CeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEE-cCCChH
Q 008205 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAII-GPQFSV 108 (574)
Q Consensus 31 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii-Gp~~s~ 108 (574)
.+.+||+++|.. ..+-.....+++.+.++. |+++.+...+...++....+.+..++.+++.+|| .|....
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEKQ--------GVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHHH--------TCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 457899999864 222234455555555553 4555444333322777777777788888888877 444433
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcC-----CeEEEEEEEcC--CCCcch
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFG-----WRNVIALYVDD--DHGRNG 181 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~-----W~~v~ii~~~~--~~g~~~ 181 (574)
........+. .+||+|......+.......+.+..+.+.....+..+++.+...+ -++++++.... ......
T Consensus 76 ~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~~~R 154 (304)
T 3o1i_D 76 AYEHNLKSWV-GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGTKPV 154 (304)
T ss_dssp SSTTTHHHHT-TTSCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEEECCCC-----CHH
T ss_pred HHHHHHHHHc-CCCCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCcchHHHH
Confidence 2222233445 899999874333211111224566777888888888888888888 88999997543 234567
Q ss_pred HHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHh-hcCCCeEEEEEeChHHHHHHHHHHHHCCCC
Q 008205 182 IAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTV-SSMMSRILILHTYDIWGLEVLNAAKHLRMM 248 (574)
Q Consensus 182 ~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i-k~~~~~viil~~~~~~~~~il~~a~~~gm~ 248 (574)
.+.+++.+++.|+.+.... ....+.......++++ +....+. | +++...+..+++++++.|+.
T Consensus 155 ~~gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~a-i-~~~d~~a~g~~~al~~~g~~ 218 (304)
T 3o1i_D 155 TTGFYEAIKNSDIHIVDSF--WADNDKELQRNLVQRVIDMGNIDY-I-VGSAVAIEAAISELRSADKT 218 (304)
T ss_dssp HHHHHHTTTTBTEEEEECC--CCCSCHHHHHHHHHHHHHHSCCSE-E-EECHHHHHHHHHHHTTTTCG
T ss_pred HHHHHHHHhcCCCEEEEee--cCCCcHHHHHHHHHHHHcCCCCCE-E-EecCcchHHHHHHHHhcCCC
Confidence 8889999998888775432 2222333333333333 2335666 3 45677888899999999875
No 74
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=98.01 E-value=0.00027 Score=67.48 Aligned_cols=200 Identities=14% Similarity=0.013 Sum_probs=124.9
Q ss_pred CeEEEEEEeccCC-ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEE-cCCChH
Q 008205 31 PVLNIGAVFALNS-TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAII-GPQFSV 108 (574)
Q Consensus 31 ~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii-Gp~~s~ 108 (574)
..-+||+++|... .+......+++.+.++. |+++ .+.+...++..-.+.+..++.+++.+|| .|..+.
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 73 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERL--------GGTA--IALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLD 73 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHT--------TCEE--EEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEE--EEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 3468999999642 22234455555555542 4544 4456666776666677778888888877 455545
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHH--cCCeEEEEEEEcCCC--CcchHHH
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDY--FGWRNVIALYVDDDH--GRNGIAA 184 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~--~~W~~v~ii~~~~~~--g~~~~~~ 184 (574)
........+...+||+|......+ +.+-.+.......+..+++.+.. .|-++++++...... .....+.
T Consensus 74 ~~~~~~~~~~~~~iPvV~~~~~~~-------~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~g 146 (291)
T 3l49_A 74 VLNPWLQKINDAGIPLFTVDTATP-------HAINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQ 146 (291)
T ss_dssp HHHHHHHHHHHTTCCEEEESCCCT-------TCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHH
T ss_pred hhHHHHHHHHHCCCcEEEecCCCC-------CcCceEecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHH
Confidence 555556667778999998754321 12335566777778888887777 899999999744322 2345678
Q ss_pred HHHHHhhc-CcEEEEEeecCCC-CChhhHHHHHHHhhcC-----CCeEEEEEeChHHHHHHHHHHHHCCCC
Q 008205 185 LGDKLAEK-RCRLSHKVPLSPK-GSRNQIIDTLLTVSSM-----MSRILILHTYDIWGLEVLNAAKHLRMM 248 (574)
Q Consensus 185 l~~~~~~~-g~~v~~~~~~~~~-~~~~~~~~~l~~ik~~-----~~~viil~~~~~~~~~il~~a~~~gm~ 248 (574)
+++.+++. |+++.....+... .+.......++++.+. +.+.| ++.+...+..+++++++.|+.
T Consensus 147 f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~ 216 (291)
T 3l49_A 147 MKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGDVGAI-WACWDVPMIGATQALQAAGRT 216 (291)
T ss_dssp HHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTSCCEE-EESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCCcCCcCEE-EECCCchHHHHHHHHHHcCCC
Confidence 88888888 5664332222211 1222333444444332 45544 455667788899999999975
No 75
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=98.01 E-value=4.5e-06 Score=79.02 Aligned_cols=84 Identities=10% Similarity=0.138 Sum_probs=67.3
Q ss_pred CCceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhccccccccc
Q 008205 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKI 548 (574)
Q Consensus 469 ~~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~ 548 (574)
.++++|++.. .|+||.... .+.++.||++||++++++.+|++ ++++... .|+.++..|.+|++|++
T Consensus 31 ~~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~lg~~--~~~~~~~------~~~~~~~~l~~G~~D~~--- 96 (267)
T 3mpk_A 31 HPVVKVAVLN--LFAPFTLFR-TDEQFGGISAAVLQLLQLRTGLD--FEIIGVD------TVEELIAKLRSGEADMA--- 96 (267)
T ss_dssp CSEEEEEEET--EETTTEECC-TTCCCBSHHHHHHHHHHHHHCCE--EEEEEES------SHHHHHHHHHHTSCSEE---
T ss_pred CCcEEEEeCC--CCCCeEEEC-CCCcEeeeHHHHHHHHHHHHCCe--EEEEecC------CHHHHHHHHHCCCccEE---
Confidence 4678998843 366765532 34579999999999999999999 8888653 79999999999999996
Q ss_pred ccceeeeEEEEeeCc----eeeecccc
Q 008205 549 FFNLVILFAILANGG----FLVPCRSM 571 (574)
Q Consensus 549 ~~~~~~~~~~~~~~~----~~v~f~~~ 571 (574)
. +++.+++|+ |+.|++..
T Consensus 97 ----~-~~~~t~~r~~~~~fs~p~~~~ 118 (267)
T 3mpk_A 97 ----G-ALFVNSARESFLSFSRPYVRN 118 (267)
T ss_dssp ----E-EEECCGGGTTTEEECSCSEEE
T ss_pred ----e-cccCChhhhcceEechhhccC
Confidence 5 899999998 56666543
No 76
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=97.99 E-value=0.00027 Score=66.67 Aligned_cols=205 Identities=8% Similarity=-0.021 Sum_probs=124.7
Q ss_pred EEEEEEeccCC-ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHH
Q 008205 33 LNIGAVFALNS-TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAH 111 (574)
Q Consensus 33 i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~ 111 (574)
-+||+++|... .+-.....+++.+.++. |+++. +.+...++..-.+....++++++.+||-........
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~ 72 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARAR--------GYQLL--IASSDDQPDSERQLQQLFRARRCDALFVASCLPPED 72 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSSC
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHC--------CCEEE--EEeCCCCHHHHHHHHHHHHHcCCCEEEEecCccccH
Confidence 37999998752 22234455555555441 45554 445556776666666777788888877533221112
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCC--CcchHHHHHHHH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDH--GRNGIAALGDKL 189 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~--g~~~~~~l~~~~ 189 (574)
.....+...++|+|......+ + +.+-.+.......+..+++.+...|.++++++...... .....+.+++.+
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l 146 (272)
T 3o74_A 73 DSYRELQDKGLPVIAIDRRLD---P---AHFCSVISDDRDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEAL 146 (272)
T ss_dssp CHHHHHHHTTCCEEEESSCCC---T---TTCEEEEECHHHHHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEEccCCC---c---cccCEEEEchHHHHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHH
Confidence 233456677999998654322 1 12334556777777888888888899999999865432 345678888999
Q ss_pred hhcCcEEEEEeecCCCCChhhHHHHHHHhh-cC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCC-eEEEEe
Q 008205 190 AEKRCRLSHKVPLSPKGSRNQIIDTLLTVS-SM--MSRILILHTYDIWGLEVLNAAKHLRMMESG-YVWIVT 257 (574)
Q Consensus 190 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik-~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~-~~~i~~ 257 (574)
++.|+.+.....-. .+..+....++++- .. ..+.| ++.+...+..+++++++.|+ .++ ...+..
T Consensus 147 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~ai-~~~~d~~a~g~~~al~~~g~-vp~di~vvg~ 214 (272)
T 3o74_A 147 QGYTGEVRRYQGEA--FSRECGQRLMQQLIDDLGGLPDAL-VTTSYVLLQGVFDTLQARPV-DSRQLQLGTF 214 (272)
T ss_dssp TTCCSEEEEEEESS--SSHHHHHHHHHHHHHHHTSCCSEE-EESSHHHHHHHHHHHHTSCG-GGCCCEEEEE
T ss_pred HHcCCChheeecCC--CCHHHHHHHHHHHHhcCCCCCcEE-EEeCchHHHHHHHHHHHcCC-CccceEEEEe
Confidence 99998765432211 23333334444432 22 35554 44566778889999999998 443 444443
No 77
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=97.99 E-value=0.0014 Score=62.97 Aligned_cols=210 Identities=10% Similarity=-0.011 Sum_probs=128.0
Q ss_pred EEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCChHHH
Q 008205 33 LNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVIA 110 (574)
Q Consensus 33 i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~ 110 (574)
-+||++.+.. ..+-.....+++.+.++. |+++.+. .++..++..-.+.+..++.+++.+||- |......
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~-~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~ 75 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQAL--------NVTVEYR-GAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVEL 75 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHH--------TCEEEEE-ECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTT
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHc--------CCEEEEe-CCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHH
Confidence 4799998775 222334556666666663 4555442 356667777677777788888888774 4333333
Q ss_pred HHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEcCC-CCcchHHHHHH
Q 008205 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVDDD-HGRNGIAALGD 187 (574)
Q Consensus 111 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~--~W~~v~ii~~~~~-~g~~~~~~l~~ 187 (574)
......+...+||+|......+. . +.+..+.++....+..+++.+... |-++++++..... ......+.+++
T Consensus 76 ~~~~~~~~~~~iPvV~~~~~~~~---~--~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~~ 150 (305)
T 3g1w_A 76 TDTINKAVDAGIPIVLFDSGAPD---S--HAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGFKE 150 (305)
T ss_dssp HHHHHHHHHTTCCEEEESSCCTT---S--CCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcEEEECCCCCC---C--ceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHHHHHHH
Confidence 33345556679999987543321 1 123445677777888888887777 9999999985432 22345677888
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeC
Q 008205 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD 258 (574)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~ 258 (574)
.+++.|..+..........+.......++++-.. +.+ .|++.+...+..+++++++.|+. .+...+..+
T Consensus 151 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-ai~~~~d~~a~g~~~al~~~g~~-~di~vig~d 221 (305)
T 3g1w_A 151 TLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLA-GIFATEANGGVGVGDAVRLESRA-GEIQIISFD 221 (305)
T ss_dssp HHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEE-EEEESSHHHHHHHHHHHHHTTCT-TTSEEEEES
T ss_pred HHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCce-EEEECCCcchhhHHHHHHhcCCC-CCeEEEEeC
Confidence 8887766443332222222333444444444333 334 34445667788899999999986 444555443
No 78
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=97.98 E-value=0.00049 Score=65.62 Aligned_cols=197 Identities=10% Similarity=0.000 Sum_probs=117.8
Q ss_pred EEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCC-ChHHH
Q 008205 33 LNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQ-FSVIA 110 (574)
Q Consensus 33 i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~-~s~~~ 110 (574)
.+||++.|.. ..+......+++.+.++. |+++ .+.++..++....+....++.+++.+||... .....
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~ 72 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQL--------GYEA--TIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGS 72 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHT--------TCEE--EEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTT
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEE--EEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHH
Confidence 4799999864 333334556666665542 4554 4556666777666667777888898887633 32222
Q ss_pred HHHHHhhccCCccEEecccCCCCcCCCCCCceEE-ecCChHHHHHHHHHHHHHc------CCeE--EEEEEEcCC--CCc
Q 008205 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVR-TTQSDLYQMAAIADIVDYF------GWRN--VIALYVDDD--HGR 179 (574)
Q Consensus 111 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r-~~ps~~~~~~ai~~ll~~~------~W~~--v~ii~~~~~--~g~ 179 (574)
......+...++|+|......+. . +.... +.+++...+..+++.+... |.++ ++++..... ...
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~~~~---~--~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~ 147 (290)
T 2fn9_A 73 IANVKRAKEAGIPVFCVDRGINA---R--GLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTW 147 (290)
T ss_dssp HHHHHHHHHTTCCEEEESSCCSC---S--SSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHH
T ss_pred HHHHHHHHHCCCeEEEEecCCCC---C--CceEEEEeCCHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHH
Confidence 22334455679999987543221 1 11222 5566776777777876665 7889 666764322 234
Q ss_pred chHHHHHHHHhhc-CcEEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEEeChHHHHHHHHHHHHCCC
Q 008205 180 NGIAALGDKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRM 247 (574)
Q Consensus 180 ~~~~~l~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~ik~--~~~~viil~~~~~~~~~il~~a~~~gm 247 (574)
...+.+++.+++. |+.+.... .. ..+..+-...++++.+ ..++.|+ +.+...+..+++++++.|+
T Consensus 148 ~R~~gf~~~l~~~~g~~~~~~~-~~-~~~~~~~~~~~~~ll~~~~~~~ai~-~~~d~~a~g~~~al~~~g~ 215 (290)
T 2fn9_A 148 DRSNGFHSVVDQYPEFKMVAQQ-SA-EFDRDTAYKVTEQILQAHPEIKAIW-CGNDAMALGAMKACEAAGR 215 (290)
T ss_dssp HHHHHHHHHHTTSTTEEEEEEE-EC-TTCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCEEEEec-cC-CCCHHHHHHHHHHHHHhCCCCcEEE-ECCchHHHHHHHHHHHCCC
Confidence 5677888899888 87654321 11 1233333344444332 2455554 4566678889999999997
No 79
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=97.98 E-value=0.00075 Score=65.61 Aligned_cols=209 Identities=9% Similarity=0.024 Sum_probs=120.8
Q ss_pred CeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHH-
Q 008205 31 PVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI- 109 (574)
Q Consensus 31 ~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~- 109 (574)
...+||+++|.+. .....+..++++.=+.. .|+++ .+.+...++....+.+..++.+++.+||.......
T Consensus 5 ~~~~Igvi~~~~~----~~~~~~~~gi~~~a~~~---~g~~l--~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 75 (325)
T 2x7x_A 5 PHFRIGVAQCSDD----SWRHKMNDEILREAMFY---NGVSV--EIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAAP 75 (325)
T ss_dssp -CCEEEEEESCCS----HHHHHHHHHHHHHHTTS---SSCEE--EEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHHH
T ss_pred CCeEEEEEecCCC----HHHHHHHHHHHHHHHHc---CCcEE--EEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHH
Confidence 4578999998732 23333333333321111 14554 45566667766666677788889998886444332
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEcCC--CCcchHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVDDD--HGRNGIAAL 185 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~--~W~~v~ii~~~~~--~g~~~~~~l 185 (574)
.......+...++|+|......+ .. +.+..+.+.+...+..+++.+... |.++++++..... ......+.+
T Consensus 76 ~~~~~~~~~~~~iPvV~~~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~Gf 150 (325)
T 2x7x_A 76 MTPIVEEAYQKGIPVILVDRKIL---SD--KYTAYIGADNYEIGRSVGNYIASSLKGKGNIVELTGLSGSTPAMERHQGF 150 (325)
T ss_dssp HHHHHHHHHHTTCCEEEESSCCS---SS--CSSEEEEECHHHHHHHHHHHHHHHTTTEEEEEEEESCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCeEEEeCCCCC---Cc--ceeEEEecCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHH
Confidence 22333445567999998753322 11 223445567777777777776554 8999999985432 234566788
Q ss_pred HHHHhhc-CcEEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEe
Q 008205 186 GDKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVT 257 (574)
Q Consensus 186 ~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~ik~--~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~ 257 (574)
++.+++. |+.+.... ....+..+-...++++.. ...+.|+ +.+...+..+++++++.|+ ..+...+..
T Consensus 151 ~~al~~~pg~~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~aI~-~~nd~~A~g~~~al~~~Gi-p~dv~vig~ 221 (325)
T 2x7x_A 151 MAAISKFPDIKLIDKA--DAAWERGPAEIEMDSMLRRHPKIDAVY-AHNDRIAPGAYQAAKMAGR-EKEMIFVGI 221 (325)
T ss_dssp HHHHHTCTEEEEEEEE--ECTTSHHHHHHHHHHHHHHCSCCCEEE-ESSTTHHHHHHHHHHHTTC-TTSSEEEEE
T ss_pred HHHHHhCCCCEEEeee--cCCCCHHHHHHHHHHHHHhCCCCCEEE-ECCCchHHHHHHHHHHcCC-CCCeEEEEE
Confidence 8888888 77654321 111233333344444432 2455554 4455667788999999996 233444443
No 80
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=97.98 E-value=0.00017 Score=70.69 Aligned_cols=208 Identities=13% Similarity=0.016 Sum_probs=127.2
Q ss_pred CeEEEEEEecc--C-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCCh
Q 008205 31 PVLNIGAVFAL--N-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFS 107 (574)
Q Consensus 31 ~~i~IG~l~~~--~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 107 (574)
..-+||+++|. . ..+-.....++..+.++. |+++ .+.++..++..-.+....++.+++.+||-....
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 129 (338)
T 3dbi_A 60 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--------GRQL--LLADGKHSAEEERQAIQYLLDLRCDAIMIYPRF 129 (338)
T ss_dssp CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHT--------TCEE--EEEECTTSHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCCEEEEEecCCcccChhHHHHHHHHHHHHHHC--------CCEE--EEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 45679999986 2 222233445555444441 4554 445566676666666677778888887764333
Q ss_pred HHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHH
Q 008205 108 VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAAL 185 (574)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l 185 (574)
.....+...+...++|+|......+. +.+..+..++..-+...++.|...|.++++++..... ......+.+
T Consensus 130 ~~~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 203 (338)
T 3dbi_A 130 LSVDEIDDIIDAHSQPIMVLNRRLRK------NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGY 203 (338)
T ss_dssp SCHHHHHHHHHHCSSCEEEESSCCSS------SGGGEECBCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHH
T ss_pred CChHHHHHHHHcCCCCEEEEcCCCCC------CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHH
Confidence 33345667788889999986543221 1122356677777777788888889999999975432 234567788
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEE
Q 008205 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWI 255 (574)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~--~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i 255 (574)
++.+++.|+.+..........+..+-...++++-+ ..++.|+ +.+...+..+++++++.|+..++-+-|
T Consensus 204 ~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~v 274 (338)
T 3dbi_A 204 KDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALV-ASNDDMAIGAMKALHERGVAVPEQVSV 274 (338)
T ss_dssp HHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHCCCCCCcceEEeCCCCHHHHHHHHHHHHcCCCCCeEEE-ECChHHHHHHHHHHHHcCCCCCCCeEE
Confidence 89999888754321111211233333344444433 3455444 456667888999999999876544433
No 81
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=97.97 E-value=2.8e-06 Score=78.98 Aligned_cols=81 Identities=15% Similarity=0.197 Sum_probs=66.2
Q ss_pred CCceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhccccccccc
Q 008205 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKI 548 (574)
Q Consensus 469 ~~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~ 548 (574)
.++++|++.. .++|+.... .+.++.||++||++++++.+|++ ++++.. .|+.++..|.+|++|++
T Consensus 10 ~~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~--- 74 (242)
T 3del_B 10 SEKFIVGTNA--TYPPFEFVD-KRGEVVGFDIDLAREISNKLGKT--LDVREF-------SFDALILNLKQHRIDAV--- 74 (242)
T ss_dssp -CEEEEEECS--CBTTTBEEC-TTSCEESHHHHHHHHHHHHHTCE--EEEEEC-------CGGGHHHHHHTTSSSEE---
T ss_pred CCcEEEEeCC--CCCCeeEEC-CCCCEEEeeHHHHHHHHHHcCCc--eEEEEc-------CHHHHHHHHhCCCcCEE---
Confidence 3668888842 456665432 35579999999999999999998 888887 79999999999999999
Q ss_pred ccceeeeEEEEeeCc----eeeecc
Q 008205 549 FFNLVILFAILANGG----FLVPCR 569 (574)
Q Consensus 549 ~~~~~~~~~~~~~~~----~~v~f~ 569 (574)
+++++++++|+ | .|++
T Consensus 75 ----~~~~~~~~~r~~~~~~-~p~~ 94 (242)
T 3del_B 75 ----ITGMSITPSRLKEILM-IPYY 94 (242)
T ss_dssp ----CSSBBCCHHHHTTEEE-EEEE
T ss_pred ----EecCcCCHHHHhcccc-eeee
Confidence 77889999997 5 6665
No 82
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=97.95 E-value=0.00047 Score=66.42 Aligned_cols=207 Identities=11% Similarity=0.034 Sum_probs=120.6
Q ss_pred eEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCCh-HH
Q 008205 32 VLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFS-VI 109 (574)
Q Consensus 32 ~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s-~~ 109 (574)
+++||++.|.. ..+......+++.+.++. |+++ .+.++..++....+.+..++.+++.+||..... ..
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~l--~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 71 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKR--------GITL--KIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATG 71 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHH--------TCEE--EEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEE--EEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 47899999864 333334555666555553 4554 445566677666666677777888887754332 21
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcC---CeEEEEEEEcCC--CCcchHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFG---WRNVIALYVDDD--HGRNGIAA 184 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~---W~~v~ii~~~~~--~g~~~~~~ 184 (574)
.......+...++|+|......+.. ...+++..+..+....+..+++.|...| -++++++..... ......+.
T Consensus 72 ~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~~~R~~G 149 (306)
T 2vk2_A 72 WEPVLKEAKDAEIPVFLLDRSIDVK--DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKG 149 (306)
T ss_dssp CHHHHHHHHHTTCCEEEESSCCCCS--CGGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEecCCCCCC--CccceEEEEecCHHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhHHHHHHH
Confidence 1223344556799999875432211 0001244566677777777777766655 789999986432 23456677
Q ss_pred HHHHHhhcCc-EEEEEeecCCCCChhhHHHHHHHhhc-----CCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeE
Q 008205 185 LGDKLAEKRC-RLSHKVPLSPKGSRNQIIDTLLTVSS-----MMSRILILHTYDIWGLEVLNAAKHLRMMESGYV 253 (574)
Q Consensus 185 l~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~l~~ik~-----~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~ 253 (574)
+++.+++.|. .+... .....+..+-...++++.+ ...+.|+ +.+...+..+++++++.|+..++-+
T Consensus 150 f~~al~~~g~~~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di 221 (306)
T 2vk2_A 150 FAEAIKNAPNIKIIRS--QSGDFTRSKGKEVMESFIKAENNGKNICMVY-AHNDDMVIGAIQAIKEAGLKPGKDI 221 (306)
T ss_dssp HHHHTTTCTTEEEEEE--EECTTCHHHHHHHHHHHHHHTTTTTTCCEEE-ESSHHHHHHHHHHHHHTTCCBTTTB
T ss_pred HHHHHhhCCCeEEEEe--ccCCCcHHHHHHHHHHHHHhCCCCCCeeEEE-ECCchHHHHHHHHHHHcCCCCCCCe
Confidence 8888888885 33221 1111233333334444322 2455444 4556678889999999998655433
No 83
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=97.94 E-value=0.00061 Score=64.36 Aligned_cols=206 Identities=12% Similarity=0.055 Sum_probs=120.6
Q ss_pred eEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCChHH
Q 008205 32 VLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVI 109 (574)
Q Consensus 32 ~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~ 109 (574)
.-+||+++|.. ..+-.....+++.+.++ .|+++.+ .+...++....+....++.+++.+||- |....
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~- 71 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNK--------AGYQLLL--GYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHS- 71 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHH--------TSCEECC--EECTTCHHHHHHHHHHHHTSCCCCEEEESSCCC-
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHH--------CCCEEEE--EcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-
Confidence 34799999863 22222344555555443 1455443 455556655555666777777776654 22221
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALGD 187 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~~ 187 (574)
... ...+...++|+|......+ + +.+..+..+....+..+++.+...|.++++++..... ......+.+++
T Consensus 72 ~~~-~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 144 (275)
T 3d8u_A 72 QRT-HQLLEASNTPVLEIAELSS---K---ASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQS 144 (275)
T ss_dssp HHH-HHHHHHHTCCEEEESSSCS---S---SSSEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHH
T ss_pred HHH-HHHHHhCCCCEEEEeeccC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHH
Confidence 222 3334557999998743221 1 2234566777777787888877779999999986533 23456778888
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
.+++.|+.+..........+..+....++++-+. ..+.|+ +.+...+..+++++++.|+..++-+.|+
T Consensus 145 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 214 (275)
T 3d8u_A 145 AMIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNALV-CSHEEIAIGALFECHRRVLKVPTDIAII 214 (275)
T ss_dssp HHHHTTCCCCCEEECSSCCCHHHHHHHHHHHHTTCTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHcCCCCCccEEEeCCCChhHHHHHHHHHHhCCCCCCEEE-EcCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 9988886543221222112333344445554333 355444 4556678889999999998655444443
No 84
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=97.94 E-value=0.00058 Score=65.19 Aligned_cols=201 Identities=11% Similarity=0.043 Sum_probs=122.4
Q ss_pred CCeEEEEEEeccCC-ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCCh
Q 008205 30 PPVLNIGAVFALNS-TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFS 107 (574)
Q Consensus 30 ~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s 107 (574)
....+||+++|... .+-.....+++.+.++. |+++ .+.+...++..-.+.+..++.+++.+||- |...
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 75 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKAN--------KYEA--LVATSQNSRISEREQILEFVHLKVDAIFITTLDD 75 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHT--------TCEE--EEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCT
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHc--------CCEE--EEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCh
Confidence 35578999998642 22233445555555442 4544 45566667776667777788888888764 3333
Q ss_pred HHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHH-c-CCe-----EEEEEEEcCC--CC
Q 008205 108 VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDY-F-GWR-----NVIALYVDDD--HG 178 (574)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~-~-~W~-----~v~ii~~~~~--~g 178 (574)
.........+...+||+|......+. .+.+..+.+.....+..+++.+.. + |-+ +++++..... ..
T Consensus 76 ~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~ 150 (293)
T 3l6u_A 76 VYIGSAIEEAKKAGIPVFAIDRMIRS-----DAVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTT 150 (293)
T ss_dssp TTTHHHHHHHHHTTCCEEEESSCCCC-----TTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHH
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCCC-----CcceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchH
Confidence 33333445566779999987543321 123445666777777778877655 5 655 9999985432 23
Q ss_pred cchHHHHHHHHhhc-CcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCC
Q 008205 179 RNGIAALGDKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMM 248 (574)
Q Consensus 179 ~~~~~~l~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~ 248 (574)
....+.+++.+++. |+.+.....-. .+..+....++++-.. ..+. |++++...+..+++++++.|+.
T Consensus 151 ~~R~~gf~~~l~~~~g~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~a-i~~~~d~~a~g~~~al~~~g~~ 220 (293)
T 3l6u_A 151 NERHRGFLKGIENEPTLSIVDSVSGN--YDPVTSERVMRQVIDSGIPFDA-VYCHNDDIAMGVLEALKKAKIS 220 (293)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEEECT--TCHHHHHHHHHHHHHTTCCCSE-EEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCCcEEeeeccCC--CCHHHHHHHHHHHHHhCCCCCE-EEECCchHHHHHHHHHHhCCCC
Confidence 45677888999988 88775442221 2334444445554333 3443 3445667788899999999975
No 85
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=97.93 E-value=0.00056 Score=65.39 Aligned_cols=207 Identities=13% Similarity=-0.004 Sum_probs=123.0
Q ss_pred CCeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChH
Q 008205 30 PPVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSV 108 (574)
Q Consensus 30 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~ 108 (574)
....+||+++|.. ..+-.....+++.+.++ .|+++. +.++..++....+....++.+++.+||......
T Consensus 18 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~ 87 (293)
T 2iks_A 18 GRTRSIGLVIPDLENTSYTRIANYLERQARQ--------RGYQLL--IACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLP 87 (293)
T ss_dssp CCCCEEEEEESCSCSHHHHHHHHHHHHHHHH--------TTCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSSC
T ss_pred CCCcEEEEEeCCCcCcHHHHHHHHHHHHHHH--------CCCEEE--EEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 3557899999853 22222344455444443 145554 445555666555666677778888877533322
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHH
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALG 186 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~ 186 (574)
....+...+...++|+|......+ + +.+..+..++...+..+++.|...|.++++++..... ......+.++
T Consensus 88 ~~~~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 161 (293)
T 2iks_A 88 PEHPFYQRWANDPFPIVALDRALD---R---EHFTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFR 161 (293)
T ss_dssp TTCHHHHTTTTSSSCEEEEESCCC---T---TTCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHHH
T ss_pred CcHHHHHHHHhCCCCEEEECCccC---c---CCCCEEEecCHHHHHHHHHHHHHCCCCEEEEEecCcccccHHHHHHHHH
Confidence 112233445668999998754322 1 1233455667777777888777779999999986533 2345677888
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEE
Q 008205 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWI 255 (574)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i 255 (574)
+.+++.|+..... +....+..+-...++++.+. ..+.|+ +.+...+..+++++++.|+..++-+-|
T Consensus 162 ~~l~~~g~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~v 229 (293)
T 2iks_A 162 TAWKDDPREVHFL--YANSYEREAAAQLFEKWLETHPMPQALF-TTSFALLQGVMDVTLRRDGKLPSDLAI 229 (293)
T ss_dssp HHHTTCCCCEEEE--EESSSCHHHHHHHHHHHTTTSCCCSEEE-ESSHHHHHHHHHHHHHHHSSCCSSCEE
T ss_pred HHHHHcCCCccEE--EcCCCChhhHHHHHHHHHhcCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCceEE
Confidence 8998888643222 11112333334455555433 345443 445666888899999998865543333
No 86
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=97.93 E-value=0.0011 Score=63.32 Aligned_cols=200 Identities=11% Similarity=0.070 Sum_probs=119.8
Q ss_pred eEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHH
Q 008205 32 VLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAH 111 (574)
Q Consensus 32 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~ 111 (574)
..+||++-+.+...-.....+++-+++ +.+- .|.++.+.+.|+..++....+.+..+.++++.+||..... ...
T Consensus 2 ~~~Igvi~~~~~p~~~~i~~gi~~~l~---~~gy--~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~~-~~~ 75 (295)
T 3lft_A 2 NAKIGVLQFVSHPSLDLIYKGIQDGLA---EEGY--KDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIATP-AAQ 75 (295)
T ss_dssp CEEEEEEECSCCHHHHHHHHHHHHHHH---HTTC--CGGGEEEEEEECTTCHHHHHHHHHHHTTSSCSEEEEESHH-HHH
T ss_pred ceEEEEEEccCChhHHHHHHHHHHHHH---HcCC--CCCceEEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCcH-HHH
Confidence 357998833332222234444444443 3332 3448888888999998887777777888889988875432 222
Q ss_pred HHHHhhccCCccEEecccCCCCcC---C---CCCCceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEcCCC-CcchH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLS---S---LQYPFFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVDDDH-GRNGI 182 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls---~---~~~~~~~r~~ps~~~~~~ai~~ll~~~--~W~~v~ii~~~~~~-g~~~~ 182 (574)
.+... ..++|+|..+..++... . .....+..+. +..-....++++... |-+++++|+..... +....
T Consensus 76 ~~~~~--~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~ 151 (295)
T 3lft_A 76 GLASA--TKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVS--DHNPAQQQVELIKALTPNVKTIGALYSSSEDNSKTQV 151 (295)
T ss_dssp HHHHH--CSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEE--ECCCHHHHHHHHHHHCTTCCEEEEEEETTCHHHHHHH
T ss_pred HHHHc--CCCCCEEEEeccChhhcCccccccCCCCcEEEEE--CCccHHHHHHHHHHhCCCCcEEEEEeCCCCcchHHHH
Confidence 33322 46999998654443211 0 0112333332 222245556776666 89999999976542 34567
Q ss_pred HHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCC
Q 008205 183 AALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRM 247 (574)
Q Consensus 183 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm 247 (574)
+.+++.+++.|+.+...... +..+....++++.. +++.|++..+ ..+...++++.+.+.
T Consensus 152 ~g~~~al~~~gi~~~~~~~~----~~~~~~~~~~~l~~-~~dai~~~~D-~~a~g~~~~l~~~~~ 210 (295)
T 3lft_A 152 EEFKAYAEKAGLTVETFAVP----STNEIASTVTVMTS-KVDAIWVPID-NTIASGFPTVVSSNQ 210 (295)
T ss_dssp HHHHHHHHHTTCEEEEEEES----SGGGHHHHHHHHTT-TCSEEEECSC-HHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHcCCEEEEEecC----CHHHHHHHHHHHHh-cCCEEEECCc-hhHHHHHHHHHHHHH
Confidence 88899999999887654322 23466677777763 6776666443 445555666666663
No 87
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=97.93 E-value=5.7e-06 Score=75.73 Aligned_cols=80 Identities=15% Similarity=0.247 Sum_probs=64.2
Q ss_pred CceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhcccccccccc
Q 008205 470 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKIF 549 (574)
Q Consensus 470 ~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~~ 549 (574)
++++|++.. .++|+..... .++.||++|+++++++.+|++ ++++.. .|+.++..|.+|++|++
T Consensus 3 ~~l~v~~~~--~~~P~~~~~~--g~~~G~~~dl~~~~~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~---- 65 (226)
T 1wdn_A 3 KKLVVATDT--AFVPFEFKQG--DLYVGFDVDLWAAIAKELKLD--YELKPM-------DFSGIIPALQTKNVDLA---- 65 (226)
T ss_dssp -CEEEEEES--SBTTTBEEET--TEEESHHHHHHHHHHHHHTCC--EEEEEE-------CGGGHHHHHHTTSSSEE----
T ss_pred ceEEEEECC--CCCCeeEecC--CcEEEeeHHHHHHHHHHhCCE--EEEEEC-------CHHHHHHHHhCCCCCEE----
Confidence 457888752 4556554332 579999999999999999998 888877 89999999999999999
Q ss_pred cceeeeEEEEeeCc----eeeecc
Q 008205 550 FNLVILFAILANGG----FLVPCR 569 (574)
Q Consensus 550 ~~~~~~~~~~~~~~----~~v~f~ 569 (574)
+++++++++|+ |+.|++
T Consensus 66 ---~~~~~~~~~r~~~~~~~~p~~ 86 (226)
T 1wdn_A 66 ---LAGITITDERKKAIDFSDGYY 86 (226)
T ss_dssp ---EEEEECCHHHHTTSEECSCCE
T ss_pred ---EEcCcCCHHHhCccccccchh
Confidence 88889999987 455554
No 88
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=97.92 E-value=7.4e-06 Score=75.42 Aligned_cols=76 Identities=22% Similarity=0.251 Sum_probs=61.1
Q ss_pred CceEEeccCccccccceecc-CCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhccccccccc
Q 008205 470 RHLRIGVPSQVIYPEFVAQG-KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKI 548 (574)
Q Consensus 470 ~~~~v~~~~~~~~~~~~~~~-~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~ 548 (574)
++|+|++.. ++||.... ..+.++.||++|+++++++.+|++ ++++..+ .|+.++..|.+|++|++
T Consensus 4 ~~l~v~~~~---~~P~~~~~~~~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~~------~~~~~~~~l~~g~~D~~--- 69 (233)
T 1ii5_A 4 MALKVGVVG---NPPFVFYGEGKNAAFTGISLDVWRAVAESQKWN--SEYVRQN------SISAGITAVAEGELDIL--- 69 (233)
T ss_dssp CCEEEEECC---CTTTCEEC-----CEESHHHHHHHHHHHHHTCC--EEEEECS------CHHHHHHHHHTTSCSEE---
T ss_pred ceEEEEecC---CCCeEEEecCCCCCEEEEeHHHHHHHHHHcCCc--EEEEEeC------CHHHHHHHHHCCCcCEE---
Confidence 568888853 55665431 235579999999999999999999 8888773 79999999999999999
Q ss_pred ccceeeeEEEEeeCc
Q 008205 549 FFNLVILFAILANGG 563 (574)
Q Consensus 549 ~~~~~~~~~~~~~~~ 563 (574)
+++++++++|+
T Consensus 70 ----~~~~~~~~~r~ 80 (233)
T 1ii5_A 70 ----IGPISVTPERA 80 (233)
T ss_dssp ----EEEEECCHHHH
T ss_pred ----EeeeecCcccc
Confidence 88889999986
No 89
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=97.92 E-value=4e-06 Score=76.87 Aligned_cols=81 Identities=19% Similarity=0.356 Sum_probs=62.8
Q ss_pred CceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhcccccccccc
Q 008205 470 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKIF 549 (574)
Q Consensus 470 ~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~~ 549 (574)
++++|++.. ++|+... .+.++.||++|+++++++.+|++ ++++..+ .|..++..|.+|++|++
T Consensus 3 ~~l~v~~~~---~~P~~~~--~~g~~~G~~~dl~~~~~~~~g~~--~~~~~~~------~~~~~~~~l~~g~~D~~---- 65 (228)
T 2pyy_A 3 QPLLVATRV---IPPFVLS--NKGELSGFSIDLWRSIATQIGIE--SKLIEYS------SVPELISAIKDNKVNLG---- 65 (228)
T ss_dssp -CEEEEECC---BTTTBBC--C---CBSHHHHHHHHHHHHHTCC--EEEEECS------SHHHHHHHHHTTSCSEE----
T ss_pred ceEEEEecC---CCCeEEe--cCCceEEEeHHHHHHHHHHhCCc--EEEEEcC------CHHHHHHHHHCCCcCEE----
Confidence 467888753 5565543 35579999999999999999998 8888774 79999999999999999
Q ss_pred cceeeeEEEEeeCc----eeeeccc
Q 008205 550 FNLVILFAILANGG----FLVPCRS 570 (574)
Q Consensus 550 ~~~~~~~~~~~~~~----~~v~f~~ 570 (574)
+++++++++|+ |+.|++.
T Consensus 66 ---~~~~~~~~~r~~~~~~~~p~~~ 87 (228)
T 2pyy_A 66 ---IAAISITAEREQNFDFSLPIFA 87 (228)
T ss_dssp ---CSSCBCCHHHHHHSEECSCSEE
T ss_pred ---EeccccCHHHHccceecccchh
Confidence 77788888886 5556553
No 90
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=97.92 E-value=0.00032 Score=68.48 Aligned_cols=208 Identities=9% Similarity=-0.003 Sum_probs=122.0
Q ss_pred CeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHH
Q 008205 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI 109 (574)
Q Consensus 31 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 109 (574)
...+||+++|.. ..+......+++.+.++ .|+++.+ .++..++....+....++.+++.+||.......
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 131 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASM--------YKYNMIL--ANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLD 131 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECSSCCC
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHH--------cCCEEEE--EECCCChHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 456899999863 22223444555555444 2465544 455566655555666777788988775332211
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALGD 187 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~~ 187 (574)
...+.. +...++|+|......+ + +.+..+.+++...+..+++.|...|.+++++|..... ......+.+++
T Consensus 132 ~~~~~~-l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 204 (332)
T 2o20_A 132 EKIRTS-LKNSRTPVVLVGTIDG---D---KEIPSVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQE 204 (332)
T ss_dssp HHHHHH-HHHHCCCEEEESCCCT---T---SCSCEEECCHHHHHHHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHHHH
T ss_pred HHHHHH-HHhCCCCEEEEccccC---C---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHHH
Confidence 223333 3456999998754322 1 1222455666666777778777789999999985532 23456678888
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
.+++.|+.+.....+....+..+-...++++-+..++.|+. ++...+..+++++++.|+..++-+.|+
T Consensus 205 al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~disvi 272 (332)
T 2o20_A 205 ALLEANIEFDENLVFEGNYSYEQGKALAERLLERGATSAVV-SHDTVAVGLLSAMMDKGVKVPEDFEII 272 (332)
T ss_dssp HHHHTTCCCCGGGEECSCCSHHHHHHHHHHHHHTTCCEEEE-SCHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHcCCCCChhhEEeCCCCHHHHHHHHHHHhccCCCEEEE-CChHHHHHHHHHHHHcCCCCccCEEEE
Confidence 99988875432111111122233333444432226665554 566678889999999998655444443
No 91
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=97.91 E-value=0.0022 Score=60.81 Aligned_cols=203 Identities=13% Similarity=0.126 Sum_probs=118.3
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCChHHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 111 (574)
+||++.|.. ..+......+++.+.++. |+++ .+.++..++..-.+.+..++++++.+||- |.......
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~--------g~~~--~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (283)
T 2ioy_A 3 TIGLVISTLNNPFFVTLKNGAEEKAKEL--------GYKI--IVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVV 72 (283)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEE--EEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHhc--------CcEE--EEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhH
Confidence 689998764 222234555666555553 4544 44566667766666677788888888664 44333222
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHc-C-CeEEEEEEEcCCC--CcchHHHHHH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF-G-WRNVIALYVDDDH--GRNGIAALGD 187 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~-~-W~~v~ii~~~~~~--g~~~~~~l~~ 187 (574)
.....+...++|+|......+ +. +....+...+...+..+++.|... | -++++++...... .....+.+++
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (283)
T 2ioy_A 73 TAIKEANSKNIPVITIDRSAN---GG--DVVCHIASDNVKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFDE 147 (283)
T ss_dssp HHHHHHHHTTCCEEEESSCCS---SS--CCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEecCCCC---Cc--ceeEEEecChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHH
Confidence 233445677999998743221 11 122334556666677777766554 5 8999999854322 2355677888
Q ss_pred HHhhc-CcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 188 KLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 188 ~~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
.+++. |+.+.....- ..+..+-...++++.+. ..+. |++++...+.-+++++++.|+ .+...+.
T Consensus 148 al~~~~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~~~~~a-i~~~nD~~A~g~~~al~~~G~--~di~viG 214 (283)
T 2ioy_A 148 AIAKYPDIKIVAKQAA--DFDRSKGLSVMENILQAQPKIDA-VFAQNDEMALGAIKAIEAANR--QGIIVVG 214 (283)
T ss_dssp HHTTCTTEEEEEEEEC--TTCHHHHHHHHHHHHHHCSCCCE-EEESSHHHHHHHHHHHHHTTC--CCCEEEE
T ss_pred HHHhCCCCEEEeeccC--CCCHHHHHHHHHHHHHhCCCccE-EEECCchHHHHHHHHHHHCCC--CCcEEEE
Confidence 88887 8765432211 12333333444444332 3443 444566678889999999997 4444443
No 92
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=97.90 E-value=0.0033 Score=61.67 Aligned_cols=213 Identities=12% Similarity=0.033 Sum_probs=129.6
Q ss_pred eEEEEEEeccCC--ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHh--cCcEEEEcCCCh
Q 008205 32 VLNIGAVFALNS--TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLE--NETVAIIGPQFS 107 (574)
Q Consensus 32 ~i~IG~l~~~~~--~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~--~~v~aiiGp~~s 107 (574)
..+||++.|... .+-.....+++.+.++. |+++. +.+...++..-.+.+.+++. +++.+||-....
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~--------g~~~~--~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~ 72 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDL--------GLDLR--ILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQ 72 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHH--------TCEEE--EEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCS
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHc--------CCeEE--EEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCch
Confidence 358999999752 23345566666666654 45544 44666777777777888888 588887753333
Q ss_pred HHHHHHHHhhccCCccEEecccCCCCcCC-------CCCC-ceEEecCChHHHHHHHHHHHHHcC------C-eEEEEEE
Q 008205 108 VIAHLVSHIANEFQVPLLSFAATDPSLSS-------LQYP-FFVRTTQSDLYQMAAIADIVDYFG------W-RNVIALY 172 (574)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~-------~~~~-~~~r~~ps~~~~~~ai~~ll~~~~------W-~~v~ii~ 172 (574)
.....+...+...+||+|......+.... ..|+ ++-.+.+.....+..+++.|...+ - ++++++.
T Consensus 73 ~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~ 152 (350)
T 3h75_A 73 YVAPQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFS 152 (350)
T ss_dssp SHHHHHHHHHTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEE
T ss_pred hhHHHHHHHHHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEe
Confidence 34445556677889999997654332210 0111 256677778878888888766655 4 7999997
Q ss_pred EcCC--CCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeE-EEEEeChHHHHHHHHHHHHCCCCC
Q 008205 173 VDDD--HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRI-LILHTYDIWGLEVLNAAKHLRMME 249 (574)
Q Consensus 173 ~~~~--~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~v-iil~~~~~~~~~il~~a~~~gm~~ 249 (574)
.... ......+.+++.+++.+. +.....+....+...-...++++-...+++ .|++++...+..+++++++.|+..
T Consensus 153 g~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~aI~~~~d~~a~g~~~al~~~G~~v 231 (350)
T 3h75_A 153 GLKVTPAAQLRERGLRRALAEHPQ-VHLRQLVYGEWNRERAYRQAQQLLKRYPKTQLVWSANDEMALGAMQAARELGRKP 231 (350)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHCTT-EEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCCB
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCC-eEEEEEeeCCCcHHHHHHHHHHHHHhCCCcCEEEECChHHHHHHHHHHHHcCCCC
Confidence 5432 234567788889988886 222212222223334444444443333333 334456677888999999999865
Q ss_pred CCeEEE
Q 008205 250 SGYVWI 255 (574)
Q Consensus 250 ~~~~~i 255 (574)
++-+-|
T Consensus 232 P~di~v 237 (350)
T 3h75_A 232 GTDLLF 237 (350)
T ss_dssp TTTBEE
T ss_pred CCCeEE
Confidence 543333
No 93
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=97.89 E-value=0.0006 Score=65.52 Aligned_cols=205 Identities=9% Similarity=0.088 Sum_probs=125.5
Q ss_pred CCCCeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCCh
Q 008205 28 TIPPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFS 107 (574)
Q Consensus 28 ~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 107 (574)
...++++||++--.....-.....+|+- .+++.+.. .|..+++.+.|.++|+....+.+.+++++++.+|++-. .
T Consensus 4 ~~~~~~~igi~q~~~hp~ld~~~~G~~~---~L~~~G~~-~g~nv~~~~~~a~gd~~~~~~~~~~l~~~~~DlIiai~-t 78 (302)
T 3lkv_A 4 IMAKTAKVAVSQIVEHPALDATRQGLLD---GLKAKGYE-EGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIA-T 78 (302)
T ss_dssp ---CCEEEEEEESCCCHHHHHHHHHHHH---HHHHTTCC-BTTTEEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEES-H
T ss_pred hhcCCceEEEEEeecChhHHHHHHHHHH---HHHhhCcc-cCCcEEEEEEeCCCCHHHHHHHHHHHHhcCCcEEEEcC-C
Confidence 3457899998854443222345566644 44555543 46789999999999999999999999999999998643 3
Q ss_pred HHHHHHHHhhccCCccEEecccCCCCcCC------CCCCceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEcCCC-C
Q 008205 108 VIAHLVSHIANEFQVPLLSFAATDPSLSS------LQYPFFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVDDDH-G 178 (574)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~------~~~~~~~r~~ps~~~~~~ai~~ll~~~--~W~~v~ii~~~~~~-g 178 (574)
..+.+++. ...++|+|..+.++|.-.. ..-+++.-+. +..-....+++++++ +-++++++|+..+. .
T Consensus 79 ~aa~a~~~--~~~~iPVVf~~v~dp~~~~l~~~~~~~g~nvtGv~--~~~~~~~~l~l~~~l~P~~k~vgvi~~~~~~~s 154 (302)
T 3lkv_A 79 PTAQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVKSIGVVYNPGEANA 154 (302)
T ss_dssp HHHHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHH
T ss_pred HHHHHHHh--hcCCCCeEEEecCCcchhhhcccccCCCCcEEEEE--CCcCHHHHHHHHHHhCCCCCEEEEEeCCCcccH
Confidence 33444443 3458999886666654221 1113343332 111123445666554 68999999966543 3
Q ss_pred cchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHH---HHHHHHHHHHCC
Q 008205 179 RNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIW---GLEVLNAAKHLR 246 (574)
Q Consensus 179 ~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~---~~~il~~a~~~g 246 (574)
....+.+++.+++.|+++.... . ....+....++.+. .+.+++++..+... ...+...+.+.+
T Consensus 155 ~~~~~~~~~~~~~~g~~~v~~~-~---~~~~~~~~~~~~l~-~~~d~i~~~~d~~~~~~~~~i~~~~~~~~ 220 (302)
T 3lkv_A 155 VSLMELLKLSAAKHGIKLVEAT-A---LKSADVQSATQAIA-EKSDVIYALIDNTVASAIEGMIVAANQAK 220 (302)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE-C---SSGGGHHHHHHHHH-TTCSEEEECSCHHHHHTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCEEEEEe-c---CChHHHHHHHHhcc-CCeeEEEEeCCcchhhHHHHHHHHHhhcC
Confidence 3456778888889999876543 2 24556777777765 35666766555432 223344455544
No 94
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=97.88 E-value=0.00051 Score=65.54 Aligned_cols=209 Identities=14% Similarity=0.057 Sum_probs=123.6
Q ss_pred CCeEEEEEEecc-----C-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc
Q 008205 30 PPVLNIGAVFAL-----N-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG 103 (574)
Q Consensus 30 ~~~i~IG~l~~~-----~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG 103 (574)
...-+||+++|. . ..+-.....+++.+.++. |+++ .+.+...++..-.+....+.++++.+||-
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~~~~~~~~~~~~~~~~~~~vdgiIi 75 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVE--------GYAL--YMSTGETEEEIFNGVVKMVQGRQIGGIIL 75 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHT--------TCEE--EECCCCSHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHc--------CCEE--EEEeCCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 355689999997 2 222234455555554442 4544 44555555444444455566678888775
Q ss_pred CCChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCC--Ccch
Q 008205 104 PQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDH--GRNG 181 (574)
Q Consensus 104 p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~--g~~~ 181 (574)
....... .....+...++|+|......+.. +.+..+.......+..+++.|...|-++++++...... ....
T Consensus 76 ~~~~~~~-~~~~~l~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R 149 (292)
T 3k4h_A 76 LYSREND-RIIQYLHEQNFPFVLIGKPYDRK-----DEITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRDR 149 (292)
T ss_dssp SCCBTTC-HHHHHHHHTTCCEEEESCCSSCT-----TTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHHHHH
T ss_pred eCCCCCh-HHHHHHHHCCCCEEEECCCCCCC-----CCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeCcccchhHHHH
Confidence 3322222 33455667799999875432211 11334566777777888888888899999999865432 3456
Q ss_pred HHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEE
Q 008205 182 IAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWI 255 (574)
Q Consensus 182 ~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i 255 (574)
.+.+++.+++.|+.+..........+..+....++++-+. ..+.|+ +++...+..+++++++.|+..++-+-|
T Consensus 150 ~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~v 224 (292)
T 3k4h_A 150 LAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIM-ATDDLIGLGVLSALSKKGFVVPKDVSI 224 (292)
T ss_dssp HHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEEE-EcChHHHHHHHHHHHHhCCCCCCeEEE
Confidence 7788889988887543211111112334444555554443 445444 456677888999999999865543333
No 95
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=97.87 E-value=0.00071 Score=66.28 Aligned_cols=207 Identities=11% Similarity=-0.016 Sum_probs=120.1
Q ss_pred CCCeEEEEEEecc--CCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC--CCHHHHHHHHHHhHhcCcEEEEcC
Q 008205 29 IPPVLNIGAVFAL--NSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTN--YSRFLGMVEALTLLENETVAIIGP 104 (574)
Q Consensus 29 ~~~~i~IG~l~~~--~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~--~~~~~a~~~~~~l~~~~v~aiiGp 104 (574)
.....+||+++|. +..+-.....+++.+.++ .|+++.+...++. .++..-.+....++.+++.+||-+
T Consensus 40 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~ 111 (342)
T 1jx6_A 40 TQRPIKISVVYPGQQVSDYWVRNIASFEKRLYK--------LNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFT 111 (342)
T ss_dssp CSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHH--------TTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEEC
T ss_pred cCCceEEEEEecCCcccHHHHHHHHHHHHHHHH--------cCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEe
Confidence 4567899999986 333223445555555444 2466666655555 566655566677778889888775
Q ss_pred CChHH-HHHHHHhhccCCccEEecccCC-CCcCCCCCCceEEecCChHHHHHHHHHHHHH-cC-CeEEEEEEEcCC-CCc
Q 008205 105 QFSVI-AHLVSHIANEFQVPLLSFAATD-PSLSSLQYPFFVRTTQSDLYQMAAIADIVDY-FG-WRNVIALYVDDD-HGR 179 (574)
Q Consensus 105 ~~s~~-~~~va~~~~~~~iP~Is~~~~~-~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~-~~-W~~v~ii~~~~~-~g~ 179 (574)
..... ...+. .+...++|+|...... +.......+.+..+.++....+..+++.+.. .| .+++++|..... ...
T Consensus 112 ~~~~~~~~~~~-~~~~~~ip~V~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~~~~ 190 (342)
T 1jx6_A 112 LDTTRHRKFVE-HVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISD 190 (342)
T ss_dssp CSSSTTHHHHH-HHHHHCSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHH
T ss_pred CChHhHHHHHH-HHHHcCCCEEEEecCCCcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCCceEEEEEcCCcchhh
Confidence 54432 23333 3455689988762221 2100001123345666777777778887665 47 999999975432 223
Q ss_pred chHHHHHHHHhhcCc-EEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEEeChHHHHHHHHHHHHCCC
Q 008205 180 NGIAALGDKLAEKRC-RLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRM 247 (574)
Q Consensus 180 ~~~~~l~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~l~~ik~--~~~~viil~~~~~~~~~il~~a~~~gm 247 (574)
...+.+++.+++.|. ..... +....+..+-...++++-+ ...+.|+ +.+...+..+++++++.|+
T Consensus 191 ~R~~Gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~ 258 (342)
T 1jx6_A 191 VRGDTFIHQVNRDNNFELQSA--YYTKATKQSGYDAAKASLAKHPDVDFIY-ACSTDVALGAVDALAELGR 258 (342)
T ss_dssp HHHHHHHHHHHHHHCCEEEEE--ECCCSSHHHHHHHHHHHHHHCCCCSEEE-ESSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcEEEEE--ecCCCCHHHHHHHHHHHHHhCCCccEEE-ECCChhHHHHHHHHHHcCC
Confidence 456778888888775 32221 2212233333334444332 2355444 4556678888999999887
No 96
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=97.87 E-value=0.001 Score=65.04 Aligned_cols=208 Identities=10% Similarity=0.000 Sum_probs=120.6
Q ss_pred CeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHH
Q 008205 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI 109 (574)
Q Consensus 31 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 109 (574)
...+||+++|.. ..+......+++.+.++ .|+++.+ .++..++....+....++.+++.+||-......
T Consensus 57 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 126 (340)
T 1qpz_A 57 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQ--------KGYTLIL--GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP 126 (340)
T ss_dssp CCSEEEEEESCSCSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCSCCC
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 456899999864 22223344555555444 2465544 555566665555566777788888775322211
Q ss_pred HHHHHHhhc-cCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHH
Q 008205 110 AHLVSHIAN-EFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALG 186 (574)
Q Consensus 110 ~~~va~~~~-~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~ 186 (574)
. .....+. ..++|+|......+. . +....+..++...+..+++.|...|.+++++|..... ......+.++
T Consensus 127 ~-~~~~~l~~~~~iPvV~~~~~~~~---~--~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~ 200 (340)
T 1qpz_A 127 E-PLLAMLEEYRHIPMVVMDWGEAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFM 200 (340)
T ss_dssp H-HHHHHHHTTTTSCEEEEEESSCC---C--SSSEEEECCHHHHHHHHHHHHHHHTCCCEEEECCCTTSHHHHHHHHHHH
T ss_pred h-HHHHHHHhhCCCCEEEEecccCC---C--CCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHHHHH
Confidence 1 1223333 368999987543221 1 2223455666766777778777779999999975432 2345677888
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEE
Q 008205 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWI 255 (574)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i 255 (574)
+.+++.|+.+.....+....+..+-...++++.+. .++.|+ +.+...+..+++++++.|+..++-+-|
T Consensus 201 ~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~disv 270 (340)
T 1qpz_A 201 KAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVF-CGGDIMAMGALCAADEMGLRVPQDVSL 270 (340)
T ss_dssp HHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHCCCCCChhheEeCCCCHHHHHHHHHHHHcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCCeEE
Confidence 89988887543211111112333333445554433 455444 456667888999999999865544433
No 97
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=97.86 E-value=0.00028 Score=67.37 Aligned_cols=205 Identities=8% Similarity=-0.066 Sum_probs=117.9
Q ss_pred CeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHH---HHHHhHhcCcEEEEcCCC
Q 008205 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMV---EALTLLENETVAIIGPQF 106 (574)
Q Consensus 31 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~---~~~~l~~~~v~aiiGp~~ 106 (574)
...+||++.|.. ..+......+++.+.++ .|+++. +.++..++....+ ....++++++.+||....
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 76 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYYGTILKQTDLELRA--------VHRHVV--VATGCGESTPREQALEAVRFLIGRDCDGVVVISH 76 (290)
T ss_dssp -CCEEEEECSCSCSHHHHHHHHHHHHHHHH--------TTCEEE--EECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHH--------CCCEEE--EEeCCCchhhhhhHHHHHHHHHhcCccEEEEecC
Confidence 456899999864 22223444555555444 246554 4455445444444 556667778888775332
Q ss_pred hHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHH
Q 008205 107 SVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAA 184 (574)
Q Consensus 107 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~ 184 (574)
......+ ..+...++|+|......+ + +.+..+..+....+..+++.|...|.+++++|..... ......+.
T Consensus 77 ~~~~~~~-~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 149 (290)
T 2rgy_A 77 DLHDEDL-DELHRMHPKMVFLNRAFD---A---LPDASFCPDHRRGGELAAATLIEHGHRKLAVISGPFTASDNVERLDG 149 (290)
T ss_dssp SSCHHHH-HHHHHHCSSEEEESSCCT---T---SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEEESCTTCHHHHHHHHH
T ss_pred CCCHHHH-HHHhhcCCCEEEEccccC---C---CCCCEEEeCcHHHHHHHHHHHHHCCCceEEEEeCCCCCccHHHHHHH
Confidence 2222233 334457999998754322 1 1223456677777777888877789999999986532 23456677
Q ss_pred HHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeE
Q 008205 185 LGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMESGYV 253 (574)
Q Consensus 185 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~--~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~ 253 (574)
+++.+++.|+.+.....+....+..+-...++++.+ ...+.|+ +++...+..+++++++.|+..++-+
T Consensus 150 f~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~G~~vP~di 219 (290)
T 2rgy_A 150 FFDELARHGIARDSVPLIESDFSPEGGYAATCQLLESKAPFTGLF-CANDTMAVSALARFQQLGISVPGDV 219 (290)
T ss_dssp HHHHHHTTTCCGGGSCEEECCSSHHHHHHHHHHHHHHTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHHHcCCCCCcccEEecCCChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCce
Confidence 888898888653211011111222333333444322 3456555 4566778889999999998654433
No 98
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=97.86 E-value=8e-06 Score=75.00 Aligned_cols=84 Identities=17% Similarity=0.169 Sum_probs=67.1
Q ss_pred CCceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhccccccccc
Q 008205 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKI 548 (574)
Q Consensus 469 ~~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~ 548 (574)
.++++|++.. .|+|+... ..+.++.||++|+++++++.+|++ ++++.. .|+.++..|.+|++|++
T Consensus 5 a~~l~v~~~~--~~~P~~~~-~~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~--- 69 (229)
T 2y7i_A 5 ARTLHFGTSA--TYAPYEFV-DADNKIVGFDIDVANAVCKEMQAE--CSFTNQ-------SFDSLIPSLRFKKFDAV--- 69 (229)
T ss_dssp CCEEEEEECC--CBTTTBEE-CTTSCEESHHHHHHHHHHHHTTCE--EEEEEC-------CGGGHHHHHHTTSCSEE---
T ss_pred CCcEEEEeCC--CcCCceEE-CCCCCCcceeHHHHHHHHHHhCCe--EEEEEc-------CHHHHHHHHhCCCceEE---
Confidence 4678888842 45665543 234579999999999999999998 888887 89999999999999999
Q ss_pred ccceeeeEEEEeeCc----eeeecccc
Q 008205 549 FFNLVILFAILANGG----FLVPCRSM 571 (574)
Q Consensus 549 ~~~~~~~~~~~~~~~----~~v~f~~~ 571 (574)
+++++.+++|+ |+.|++..
T Consensus 70 ----~~~~~~~~~r~~~~~~s~p~~~~ 92 (229)
T 2y7i_A 70 ----IAGMDMTPKREQQVSFSQPYYEG 92 (229)
T ss_dssp ----CSSCBCCHHHHTTSEECSCSBCC
T ss_pred ----EecCccCHHHhcceeeccccccC
Confidence 77788888887 66676643
No 99
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=97.85 E-value=0.001 Score=64.17 Aligned_cols=199 Identities=9% Similarity=-0.033 Sum_probs=122.4
Q ss_pred EEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCChHHH
Q 008205 33 LNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVIA 110 (574)
Q Consensus 33 i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~ 110 (574)
.+||+++|.. ..+-.....+++.+.++. |+++. +.+...++..-.+.+..++.+++.+||- |......
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~ 72 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESL--------GAKVF--VQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVL 72 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHT--------SCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSC
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEE--EECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhh
Confidence 5799999864 333345667777666652 45444 4556667776667777788888888774 3333332
Q ss_pred HHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHH-HcCCeEEEEEEEcCCC--CcchHHHHHH
Q 008205 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVD-YFGWRNVIALYVDDDH--GRNGIAALGD 187 (574)
Q Consensus 111 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~-~~~W~~v~ii~~~~~~--g~~~~~~l~~ 187 (574)
......+...+||+|......+. .. ....+.......+..+++.|. ..|-++++++...... .....+.+++
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~~~~---~~--~~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~~ 147 (313)
T 3m9w_A 73 SNVVKEAKQEGIKVLAYDRMIND---AD--IDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMK 147 (313)
T ss_dssp HHHHHHHHTTTCEEEEESSCCTT---SC--CSEEEEECHHHHHHHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEECCcCCC---CC--ceEEEecCHHHHHHHHHHHHHHhCCCCcEEEEECCCCCccHHHHHHHHHH
Confidence 33445567789999987543221 11 113445567777788888766 8999999999754322 3345677888
Q ss_pred HHhhc----CcEEEEEeecCCCCChhhHHHHHHHh-hc--CCCeEEEEEeChHHHHHHHHHHHHCCCC
Q 008205 188 KLAEK----RCRLSHKVPLSPKGSRNQIIDTLLTV-SS--MMSRILILHTYDIWGLEVLNAAKHLRMM 248 (574)
Q Consensus 188 ~~~~~----g~~v~~~~~~~~~~~~~~~~~~l~~i-k~--~~~~viil~~~~~~~~~il~~a~~~gm~ 248 (574)
.+++. ++.+..... ....+.......++++ +. ...+.| ++++...+..+++++++.|+.
T Consensus 148 ~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~ai-~~~~d~~a~g~~~al~~~G~~ 213 (313)
T 3m9w_A 148 VLKPYVDSGKIKVVGDQW-VDGWLPENALKIMENALTANNNKIDAV-VASNDATAGGAIQALSAQGLS 213 (313)
T ss_dssp HHHHHHHTTSEEEEEEEE-CGGGCHHHHHHHHHHHHHHTTTCCCEE-EESSHHHHHHHHHHHHTTTCT
T ss_pred HHHhhccCCCEEEEeecc-CCCcCHHHHHHHHHHHHHhCCCCeeEE-EECCCchHHHHHHHHHHcCCC
Confidence 88776 566543322 1112333333444443 32 244443 445667788899999999985
No 100
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=97.84 E-value=0.00039 Score=66.28 Aligned_cols=203 Identities=9% Similarity=0.037 Sum_probs=118.3
Q ss_pred eEEEEEEecc-----CCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCC
Q 008205 32 VLNIGAVFAL-----NSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQF 106 (574)
Q Consensus 32 ~i~IG~l~~~-----~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~ 106 (574)
.-+||+++|. +..+-.....+++.+.++ .|+++. +.++..++....+....++++++.+||....
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 73 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGA--------VNYFVL--PFPFSEDRSQIDIYRDLIRSGNVDGFVLSSI 73 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHH--------TTCEEE--ECCCCSSTTCCHHHHHHHHTTCCSEEEECSC
T ss_pred eeEEEEEecccccccCChhHHHHHHHHHHHHHH--------cCCEEE--EEeCCCchHHHHHHHHHHHcCCCCEEEEeec
Confidence 4579999986 333334555666665554 245554 3444444433344455667778888775332
Q ss_pred hHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHH
Q 008205 107 SVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAA 184 (574)
Q Consensus 107 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~ 184 (574)
...... ...+...++|+|......+ ... +..+...+...+..+++.|...|.+++++|..... ......+.
T Consensus 74 ~~~~~~-~~~l~~~~iPvV~~~~~~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 146 (287)
T 3bbl_A 74 NYNDPR-VQFLLKQKFPFVAFGRSNP---DWD---FAWVDIDGTAGTRQAVEYLIGRGHRRIAILAWPEDSRVGNDRLQG 146 (287)
T ss_dssp CTTCHH-HHHHHHTTCCEEEESCCST---TCC---CCEEEECHHHHHHHHHHHHHHHTCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCcHH-HHHHHhcCCCEEEECCcCC---CCC---CCEEEeccHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHH
Confidence 221222 3344567999998754221 111 22345566667777778777779999999985532 23456678
Q ss_pred HHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc-C---CCeEEEEEeChHHHHHHHHHHHHCCCCCCCe
Q 008205 185 LGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-M---MSRILILHTYDIWGLEVLNAAKHLRMMESGY 252 (574)
Q Consensus 185 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~-~---~~~viil~~~~~~~~~il~~a~~~gm~~~~~ 252 (574)
+++.+++.|+.+.....+....+..+-...++++.+ . ..+.|+ +.+...+..+++++++.|+..++-
T Consensus 147 f~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~vP~d 217 (287)
T 3bbl_A 147 YLEAMQTAQLPIETGYILRGEGTFEVGRAMTLHLLDLSPERRPTAIM-TLNDTMAIGAMAAARERGLTIGTD 217 (287)
T ss_dssp HHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSCTTTSCSEEE-ESSHHHHHHHHHHHHHTTCCBTTT
T ss_pred HHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHHhhCCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCC
Confidence 888898888654211011111233333445555543 3 345444 456667888999999999865443
No 101
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=97.84 E-value=0.00024 Score=67.28 Aligned_cols=203 Identities=13% Similarity=0.034 Sum_probs=110.1
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 112 (574)
+||+++|.. ..+-.....+++.+.++ . |+++ .+.+...++....+....++.+++.+||........ .
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~---~-----g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~ 69 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVLLE---Q-----RYDL--ALFPILSLARLKRYLENTTLAYLTDGLILASYDLTE-R 69 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHGG---G-----TCEE--EECCCCSCCCCC---------CCCSEEEEESCCCC---
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHH---C-----CCEE--EEEeCCCchhhHHHHHHHHHhCCCCEEEEecCCCCH-H
Confidence 389998853 22212333344333332 1 3544 445554444333344556667788887753322222 2
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcC-C-----CCc-chHHHH
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD-D-----HGR-NGIAAL 185 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~-~-----~g~-~~~~~l 185 (574)
....+...++|+|......+ + +..+.......+..+++.+...|.++++++.... . ... ...+.+
T Consensus 70 ~~~~~~~~~iPvV~~~~~~~-------~-~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~gf 141 (276)
T 2h0a_A 70 FEEGRLPTERPVVLVDAQNP-------R-YDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGF 141 (276)
T ss_dssp ----CCSCSSCEEEESSCCT-------T-SEEEEECSHHHHHHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHH
T ss_pred HHHHHhhcCCCEEEEeccCC-------C-CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCcccccccchhHHHHHHHH
Confidence 23445667999998743321 1 3455567777778888888778999999998654 3 334 567888
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
++.+++.|+.+.....+....+..+-...++++.+. ..+.|+ +++...+..+++++++.|+..++-+.|+
T Consensus 142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 213 (276)
T 2h0a_A 142 QEALKEAGRPFSPDRLYITRHSQEGGRLALRHFLEKASPPLNVF-AGADQVALGVLEEAVRLGLTPGRDVRVL 213 (276)
T ss_dssp HHHHHHTTCCCCGGGEEEECSSHHHHHHHHHHHHTTCCSSEEEE-CSSHHHHHHHHHHHHTTSCTTTTSEEEE
T ss_pred HHHHHHcCCCCChHHeeecCCChHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 899998886542110111112333334455555443 355544 5566778889999999998665544443
No 102
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=97.82 E-value=0.0022 Score=60.54 Aligned_cols=206 Identities=11% Similarity=0.033 Sum_probs=120.5
Q ss_pred CCeEEEEEEeccCC-ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChH
Q 008205 30 PPVLNIGAVFALNS-TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSV 108 (574)
Q Consensus 30 ~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~ 108 (574)
...-+||+++|... .+-.....+++.+.++ . |+++. +.+...+...-.+....++++++.+||-.....
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~----~----g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 74 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILES----R----GYIGV--LFDANADIEREKTLLRAIGSRGFDGLILQSFSN 74 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHT----T----TCEEE--EEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHH----C----CCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 45578999998642 1112333344333332 2 45544 455556666555566677777888877533333
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC-C--CcchHHHH
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD-H--GRNGIAAL 185 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~-~--g~~~~~~l 185 (574)
......+...++|+|......+ +.. +-.+..+....+..+++.|...|-++++++..... . .....+.+
T Consensus 75 --~~~~~~l~~~~iPvV~i~~~~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf 146 (276)
T 3jy6_A 75 --PQTVQEILHQQMPVVSVDREMD---ACP---WPQVVTDNFEAAKAATTAFRQQGYQHVVVLTSELELSRTRQERYRGI 146 (276)
T ss_dssp --HHHHHHHHTTSSCEEEESCCCT---TCS---SCEEECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHCCCCEEEEecccC---CCC---CCEEEEChHHHHHHHHHHHHHcCCCeEEEEecCCCCCchHHHHHHHH
Confidence 3444556678999998754322 111 23455677777888888888889999999987653 2 13455666
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC-CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEe
Q 008205 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM-MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVT 257 (574)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~-~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~ 257 (574)
++.+++.+. +... -........+....+.++.. ..+. |++++...+..+++++++.|+..++-+-|++
T Consensus 147 ~~~l~~~~~-~~~~--~~~~~~~~~~~~~~~~l~~~~~~~a-i~~~~d~~a~g~~~al~~~g~~vP~di~vig 215 (276)
T 3jy6_A 147 LAAAQDVDV-LEVS--ESSYNHSEVHQRLTQLITQNDQKTV-AFALKERWLLEFFPNLIISGLIDNQTVTATG 215 (276)
T ss_dssp HTTCSEEEE-EEEC--SSSCCHHHHHHHHHHHHHSSSSCEE-EEESSHHHHHHHSHHHHHSSSCCSSSEEEEE
T ss_pred HHHHHhCCc-EEEe--ccccCCcHHHHHHHHHHhcCCCCcE-EEEeCcHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 666666643 2111 11001223344455555433 4444 3446677788899999999987665554443
No 103
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=97.81 E-value=0.00024 Score=67.88 Aligned_cols=208 Identities=9% Similarity=-0.011 Sum_probs=123.2
Q ss_pred CCeEEEEEEeccCC-ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChH
Q 008205 30 PPVLNIGAVFALNS-TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSV 108 (574)
Q Consensus 30 ~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~ 108 (574)
...-+||+++|... .+-.....+++.+.++ .|+++ .+.+...++....+....++.+++.+||-.....
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~--------~g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 75 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARH--------KGYSV--LLANTAEDIVREREAVGQFFERRVDGLILAPSEG 75 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEE--EEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHH--------CCCEE--EEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 35568999998642 2223444555555544 14544 4555666766666666677778888877533322
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHH
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALG 186 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~ 186 (574)
.......+...++|+|......+ . +.+-.+..+....+..+++.|...|-++++++..... ......+.++
T Consensus 76 -~~~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 148 (291)
T 3egc_A 76 -EHDYLRTELPKTFPIVAVNRELR---I---PGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFR 148 (291)
T ss_dssp -CCHHHHHSSCTTSCEEEESSCCC---C---TTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHH
T ss_pred -ChHHHHHhhccCCCEEEEecccC---C---CCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHH
Confidence 22344556778999998754332 1 2234556677777888888888889999999985542 2345677888
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEE
Q 008205 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWI 255 (574)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~--~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i 255 (574)
+.+++.|+.+..........+..+....++++-+ ...+.|+ +.+...+..+++++++.|+..++-+-|
T Consensus 149 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~v 218 (291)
T 3egc_A 149 AAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALL-TSSHRITEGAMQALNVLGLRYGPDVEI 218 (291)
T ss_dssp HHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEE-ESSHHHHHHHHHHHHHHTCCBTTTBEE
T ss_pred HHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 8898888653211111111111112233333322 3455444 466677888999999999875543333
No 104
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=97.80 E-value=1.1e-05 Score=75.76 Aligned_cols=82 Identities=17% Similarity=0.098 Sum_probs=64.9
Q ss_pred CceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhcccccccccc
Q 008205 470 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKIF 549 (574)
Q Consensus 470 ~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~~ 549 (574)
++++|++. .|+||.... .+.++.||.+||++++++.+|++ .++++.. .|+.++..|.+|++|++
T Consensus 13 ~~l~v~~~---~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~-~~~~~~~-------~~~~~~~~l~~g~~D~~---- 76 (257)
T 2q88_A 13 GFARIAIA---NEPPFTAVG-ADGKVSGAAPDVAREIFKRLGVA-DVVASIS-------EYGAMIPGLQAGRHDAI---- 76 (257)
T ss_dssp TEEEEEEC---CCTTTCEEC-TTCCEESHHHHHHHHHHHHTTCC-EEEEEEC-------CGGGHHHHHHTTSCSEE----
T ss_pred CeEEEEcC---CCCCeeEEC-CCCCcccccHHHHHHHHHHcCCC-eeeEEeC-------CHHHHHHHHHCCCcCEE----
Confidence 56888884 456665432 24579999999999999999985 2566666 79999999999999999
Q ss_pred cceeeeEEEEeeCc----eeeeccc
Q 008205 550 FNLVILFAILANGG----FLVPCRS 570 (574)
Q Consensus 550 ~~~~~~~~~~~~~~----~~v~f~~ 570 (574)
+++++.+++|+ |+.|++.
T Consensus 77 ---~~~~~~t~~r~~~~~~s~p~~~ 98 (257)
T 2q88_A 77 ---TAGLFMKPERCAAVAYSQPILC 98 (257)
T ss_dssp ---CSCCBCCHHHHTTSEECSCCCE
T ss_pred ---EecccCCHHHHhccccccchhc
Confidence 77788899987 6666654
No 105
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=97.79 E-value=0.0022 Score=60.99 Aligned_cols=210 Identities=8% Similarity=-0.041 Sum_probs=119.0
Q ss_pred CCeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHH-hHhcCcEEEEcCCChH
Q 008205 30 PPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALT-LLENETVAIIGPQFSV 108 (574)
Q Consensus 30 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~-l~~~~v~aiiGp~~s~ 108 (574)
...-+||+++|...... .....+..++++.=+.. |+++.+ .+...+.... ....+ +.++++.+||-.....
T Consensus 6 ~~s~~Igvv~~~~~~~~-~~~~~~~~gi~~~a~~~----g~~~~~--~~~~~~~~~~-~~~~~~l~~~~vdgiIi~~~~~ 77 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELM-GFTSQMVFGITEVLSTT----QYHLVV--TPHIHAKDSM-VPIRYILETGSADGVIISKIEP 77 (288)
T ss_dssp -CCCEEEEECBCCCCSS-CHHHHHHHHHHHHHTTS----SCEEEE--CCBSSGGGTT-HHHHHHHHHTCCSEEEEESCCT
T ss_pred CCCCEEEEEecCCcccc-HHHHHHHHHHHHHHHHc----CCEEEE--ecCCcchhHH-HHHHHHHHcCCccEEEEecCCC
Confidence 35568999999643111 23333333333332222 455544 4443333222 22233 4456777766422221
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCC--CcchHHHHH
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDH--GRNGIAALG 186 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~--g~~~~~~l~ 186 (574)
.. .....+...++|+|......+ + +.+-.+.......+..+++.+...|-++++++...... .....+.++
T Consensus 78 ~~-~~~~~l~~~~iPvV~i~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~ 150 (288)
T 3gv0_A 78 ND-PRVRFMTERNMPFVTHGRSDM---G---IEHAFHDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKGFN 150 (288)
T ss_dssp TC-HHHHHHHHTTCCEEEESCCCS---S---CCCEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHHHH
T ss_pred Cc-HHHHHHhhCCCCEEEECCcCC---C---CCCcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHHHHH
Confidence 11 223445678999998654322 1 12234556777778888888888899999999855432 345678888
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEE
Q 008205 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWI 255 (574)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i 255 (574)
+.+++.|+.+.....+....+..+....++++-+. ..+.| ++++...+..+++++++.|+..++-+-|
T Consensus 151 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~A~g~~~al~~~g~~vP~di~v 220 (288)
T 3gv0_A 151 RGIRDFGLTEFPIDAVTIETPLEKIRDFGQRLMQSSDRPDGI-VSISGSSTIALVAGFEAAGVKIGEDVDI 220 (288)
T ss_dssp HHHHHTTCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSEE-EESCHHHHHHHHHHHHTTTCCTTTSCEE
T ss_pred HHHHHcCCCcchhheeccccchHHHHHHHHHHHhCCCCCcEE-EEcCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 99999998764332222223334444556665443 34444 3556677888999999999875544433
No 106
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=97.78 E-value=0.0015 Score=62.65 Aligned_cols=205 Identities=8% Similarity=-0.030 Sum_probs=120.3
Q ss_pred eEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCChHH
Q 008205 32 VLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVI 109 (574)
Q Consensus 32 ~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~ 109 (574)
+++||++.|.. ..+-.....+++.+.++. |+++ .+.+. .++..-.+.+..++.+++.+||- |.....
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~ 70 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDL--------GFEV--IKIAV-PDGEKTLNAIDSLAASGAKGFVICTPDPKL 70 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TEEE--EEEEC-CSHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHc--------CCEE--EEeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCchh
Confidence 58999999865 223334556666666654 4554 45555 47766677777888888888764 444444
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHH-HcCC-----eEEEEEE-EcCC--CCcc
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVD-YFGW-----RNVIALY-VDDD--HGRN 180 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~-~~~W-----~~v~ii~-~~~~--~g~~ 180 (574)
.......+...+||+|......+.......+.+..+..+....+...++.+. +.+- .+++++. .... ....
T Consensus 71 ~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~~~~~~ 150 (306)
T 8abp_A 71 GSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 150 (306)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHHHH
T ss_pred hHHHHHHHHHCCCcEEEeCCCCCCccccccccccEEecChhHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCChHHHH
Confidence 4444556677899999875432221111111233445566666666665443 4333 3888886 3332 2345
Q ss_pred hHHHHHHHHhhcCc---EEEEEeecCCCCChhhHHHHHHHhhcC--CCeE-EEEEeChHHHHHHHHHHHHCCCCC
Q 008205 181 GIAALGDKLAEKRC---RLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRI-LILHTYDIWGLEVLNAAKHLRMME 249 (574)
Q Consensus 181 ~~~~l~~~~~~~g~---~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~v-iil~~~~~~~~~il~~a~~~gm~~ 249 (574)
..+.+++.+++.|. ++..... ...+...-...++++-.. +.+. +|++++...+.-+++++++.|+..
T Consensus 151 R~~Gf~~~l~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~~al~~~g~~v 223 (306)
T 8abp_A 151 RTTGSMDALKAAGFPEKQIYQVPT--KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKA 223 (306)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEEC--SSSSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHhcCCCCcEEEeecc--CCCChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHHHHHHHHHcCCCC
Confidence 66788888888764 2332211 112334444555554443 3444 345556677888999999999854
No 107
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=97.78 E-value=0.0005 Score=65.62 Aligned_cols=205 Identities=13% Similarity=0.059 Sum_probs=110.9
Q ss_pred CeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHH
Q 008205 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI 109 (574)
Q Consensus 31 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 109 (574)
.+.+||+++|.. ..+......+++.+.++ . |+++.+. +++..++....+....++.+++.+||.......
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~----~----g~~~~~~-~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 77 (290)
T 3clk_A 7 SSNVIAAVVSSVRTNFAQQILDGIQEEAHK----N----GYNLIIV-YSGSADPEEQKHALLTAIERPVMGILLLSIALT 77 (290)
T ss_dssp -CCEEEEECCCCSSSHHHHHHHHHHHHHHT----T----TCEEEEE-C----------CHHHHHHSSCCSEEEEESCC--
T ss_pred cCCEEEEEeCCCCChHHHHHHHHHHHHHHH----c----CCeEEEE-eCCCCCHHHHHHHHHHHHhcCCCEEEEecccCC
Confidence 456899999853 22222334444444332 2 4555443 144445444444556677778888775333222
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcC--CCCcchHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD--DHGRNGIAALGD 187 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~--~~g~~~~~~l~~ 187 (574)
...+ ..+...++|+|......+ . + +..+.+++...+..+++.+...|.++++++.... .......+.+++
T Consensus 78 ~~~~-~~l~~~~iPvV~~~~~~~---~---~-~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 149 (290)
T 3clk_A 78 DDNL-QLLQSSDVPYCFLSMGFD---D---D-RPFISSDDEDIGYQATNLLINEGHRQIGIAGIDQYPYTGRKRLAGYKK 149 (290)
T ss_dssp --CH-HHHHCC--CEEEESCC-----C---C-SCEEECCHHHHHHHHHHHHHTTTCCSEEEESCCCCTTTHHHHHHHHHH
T ss_pred HHHH-HHHHhCCCCEEEEcCCCC---C---C-CCEEEeChHHHHHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHHH
Confidence 2223 344568999998754322 1 2 3345667777778888887778999999998542 334567788889
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc-CCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeE
Q 008205 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-MMSRILILHTYDIWGLEVLNAAKHLRMMESGYV 253 (574)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~-~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~ 253 (574)
.+++.|+.+.....+....+..+-...++++.+ .+.+.|+ +.+...+..+++++++.|+..++-+
T Consensus 150 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di 215 (290)
T 3clk_A 150 ALKEANIAINQEWIKPGDYSYTSGEQAMKAFGKNTDLTGII-AASDMTAIGILNQASSFGIEVPKDL 215 (290)
T ss_dssp HHHHTTCCCCGGGEECCCSSHHHHHHHHHHHCTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHcCCCCCcceEEcCCCChhhHHHHHHHHhccCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCce
Confidence 999888754211111111233333445555443 3455444 4556678888999999998655433
No 108
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=97.73 E-value=0.0027 Score=60.65 Aligned_cols=212 Identities=10% Similarity=0.065 Sum_probs=120.3
Q ss_pred CCeEEEEEEeccCC--ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCCh
Q 008205 30 PPVLNIGAVFALNS--TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFS 107 (574)
Q Consensus 30 ~~~i~IG~l~~~~~--~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 107 (574)
...-+||+++|... .........+..++++.=+.. |+++ .+.++..+...-.+....+.++++.+||-....
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~----g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~ 78 (295)
T 3hcw_A 5 NQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQH----GYGT--QTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSK 78 (295)
T ss_dssp CCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTT----TCEE--EECCCCSHHHHHHHHHHHHHTTCCSEEEESCCC
T ss_pred CCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHC----CCEE--EEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcc
Confidence 45568999996421 011223333333333332222 4554 445555555444444555667788887753222
Q ss_pred HHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCC--CcchHHHH
Q 008205 108 VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDH--GRNGIAAL 185 (574)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~--g~~~~~~l 185 (574)
... .....+...++|+|......+... ..+..+......-+..+++.|...|.++++++...... .....+.+
T Consensus 79 ~~~-~~~~~l~~~~iPvV~i~~~~~~~~----~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 153 (295)
T 3hcw_A 79 END-PIKQMLIDESMPFIVIGKPTSDID----HQFTHIDNDNILASENLTRHVIEQGVDELIFITEKGNFEVSKDRIQGF 153 (295)
T ss_dssp TTC-HHHHHHHHTTCCEEEESCCCSSGG----GGSCEEEECHHHHHHHHHHHHHHHCCSEEEEEEESSCCHHHHHHHHHH
T ss_pred cCh-HHHHHHHhCCCCEEEECCCCcccc----CCceEEecCcHHHHHHHHHHHHHcCCccEEEEcCCccchhHHHHHHHH
Confidence 222 334455677999998754322110 01233455666667777787777899999999865432 34567888
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc-----CCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-----MMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~-----~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
++.+++.|+.+.... .. .+..+....++++.+ ...+.| ++++...+..+++++++.|+..++-+-|+
T Consensus 154 ~~al~~~g~~~~~~~-~~--~~~~~~~~~~~~~l~~~~~~~~~~ai-~~~~d~~A~g~~~al~~~g~~vP~di~vi 225 (295)
T 3hcw_A 154 ETVASQFNLDYQIIE-TS--NEREVILNYMQNLHTRLKDPNIKQAI-ISLDAMLHLAILSVLYELNIEIPKDVMTA 225 (295)
T ss_dssp HHHHHHTTCEEEEEE-EC--SCHHHHHHHHHHHHHHHTCTTSCEEE-EESSHHHHHHHHHHHHHTTCCTTTTEEEE
T ss_pred HHHHHHcCCCeeEEe-cc--CCHHHHHHHHHHHHhhcccCCCCcEE-EECChHHHHHHHHHHHHcCCCCCCceEEE
Confidence 999999998765221 11 233333333333322 145554 44566678889999999998765544443
No 109
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=97.72 E-value=2.6e-05 Score=71.69 Aligned_cols=82 Identities=13% Similarity=0.142 Sum_probs=65.3
Q ss_pred CCceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhccccccccc
Q 008205 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKI 548 (574)
Q Consensus 469 ~~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~ 548 (574)
.++++|++.. .++|+.... .+..+.||++||++++++.+|++ ++++.. .|..++..|.+|++|++
T Consensus 10 ~~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~--- 74 (234)
T 3h7m_A 10 HRTIVVGGDR--DYPPYEFID-QNGKPAGYNVELTRAIAEVMGMT--VEFRLG-------AWSEMFSALKSGRVDVL--- 74 (234)
T ss_dssp SSCEEEEEET--EETTTEEEC-TTSCEESHHHHHHHHHHHHHTCC--EEEEEE-------CGGGHHHHHHTTSSSEE---
T ss_pred CCEEEEEecC--CCCCeEEEC-CCCCEeeeEHHHHHHHHHHcCCc--eEEEeC-------CHHHHHHHHhCCCeeEE---
Confidence 4678888732 456665432 34579999999999999999999 888876 89999999999999994
Q ss_pred ccceeeeEEEEeeCc----eeeeccc
Q 008205 549 FFNLVILFAILANGG----FLVPCRS 570 (574)
Q Consensus 549 ~~~~~~~~~~~~~~~----~~v~f~~ 570 (574)
++++.+++|+ |+.|++.
T Consensus 75 -----~~~~~~~~r~~~~~~s~p~~~ 95 (234)
T 3h7m_A 75 -----QGISWSEKRARQIDFTPPHTI 95 (234)
T ss_dssp -----EEEECCHHHHTTEEEEEEEEE
T ss_pred -----EeccCCHhHHhhcCCCccccc
Confidence 4678888887 6777654
No 110
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=97.71 E-value=0.0024 Score=60.76 Aligned_cols=206 Identities=16% Similarity=0.107 Sum_probs=120.3
Q ss_pred CCeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHH
Q 008205 30 PPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI 109 (574)
Q Consensus 30 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 109 (574)
...-+||++++.+..+-.....+++.+.++. |+++.+...+...+ -.+.+..++.+++.+||-......
T Consensus 10 ~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~---~~~~~~~l~~~~vdgiIi~~~~~~ 78 (289)
T 3k9c_A 10 ASSRLLGVVFELQQPFHGDLVEQIYAAATRR--------GYDVMLSAVAPSRA---EKVAVQALMRERCEAAILLGTRFD 78 (289)
T ss_dssp ---CEEEEEEETTCHHHHHHHHHHHHHHHHT--------TCEEEEEEEBTTBC---HHHHHHHHTTTTEEEEEEETCCCC
T ss_pred CCCCEEEEEEecCCchHHHHHHHHHHHHHHC--------CCEEEEEeCCCCHH---HHHHHHHHHhCCCCEEEEECCCCC
Confidence 3456899999433333234455555554442 46666555443323 234455667778888775332222
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC-CCcchHHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD-HGRNGIAALGDK 188 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~-~g~~~~~~l~~~ 188 (574)
...+.. +.. ++|+|......+ + +.+-.+..+...-+...++.|...|-++++++..... ......+.+++.
T Consensus 79 ~~~~~~-~~~-~iPvV~i~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~a 150 (289)
T 3k9c_A 79 TDELGA-LAD-RVPALVVARASG---L---PGVGAVRGDDVAGITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFLAA 150 (289)
T ss_dssp HHHHHH-HHT-TSCEEEESSCCS---S---TTSEEEEECHHHHHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHHHH
T ss_pred HHHHHH-HHc-CCCEEEEcCCCC---C---CCCCEEEeChHHHHHHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHHHH
Confidence 233433 345 999998754322 1 2234456677777778888887889999999986543 234567788899
Q ss_pred HhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 189 LAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 189 ~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
+++.|+.+... .+....+..+-...++++-+. ..+.| ++++...+..+++++++.|+..++-+-|+
T Consensus 151 l~~~g~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~A~g~~~al~~~g~~vP~di~vi 218 (289)
T 3k9c_A 151 MDRHGLSASAT-VVTGGTTETEGAEGMHTLLEMPTPPTAV-VAFNDRCATGVLDLLVRSGRDVPADISVV 218 (289)
T ss_dssp HHHTTCGGGEE-EECCCSSHHHHHHHHHHHHTSSSCCSEE-EESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHCCCCCCcc-EEECCCCHHHHHHHHHHHHcCCCCCCEE-EECChHHHHHHHHHHHHcCCCCCCceEEE
Confidence 99988753221 122223334444455554433 34443 44566778889999999998765444333
No 111
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=97.71 E-value=0.00044 Score=67.46 Aligned_cols=204 Identities=11% Similarity=0.023 Sum_probs=118.9
Q ss_pred CCeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChH
Q 008205 30 PPVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSV 108 (574)
Q Consensus 30 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~ 108 (574)
....+||+++|.. ..+......+++.+.++. |+++.+ .++..++....+....++.+++.+||......
T Consensus 58 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 127 (332)
T 2hsg_A 58 KKTTTVGVIIPDISNIFYAELARGIEDIATMY--------KYNIIL--SNSDQNQDKELHLLNNMLGKQVDGIIFMSGNV 127 (332)
T ss_dssp C-CCEEEEEEC--CCSHHHHHHHHHHHHHHHH--------TCEEEE--EECCSHHHHHHHHHHHTSCCSSCCEEECCSSC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCEEEE--EeCCCChHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 3457899999853 333345566666666552 455544 44555554444555566677888777533222
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcC-C--CCcchHHHH
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD-D--HGRNGIAAL 185 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~-~--~g~~~~~~l 185 (574)
....+ ..+...++|+|......+ + +.+..+..++...+..+++.|...|.+++++|.... . ......+.+
T Consensus 128 ~~~~~-~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf 200 (332)
T 2hsg_A 128 TEEHV-EELKKSPVPVVLAASIES---T---NQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGY 200 (332)
T ss_dssp CHHHH-HHHTTSSSCEEEESCCCS---C---TTSCEEEECHHHHHHHHHHHHHTTTCSCEEEEESCTTSHHHHTTHHHHH
T ss_pred CHHHH-HHHHhCCCCEEEEccccC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCcccCccHHHHHHHH
Confidence 22333 344567999998754322 1 122234556666677777777777999999998553 2 235677889
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCC
Q 008205 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESG 251 (574)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~ 251 (574)
++.+++.|+.+.....+....+..+-...++++.+. .++.|+ +.+...+..+++++++.|+..++
T Consensus 201 ~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~ 267 (332)
T 2hsg_A 201 KRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIF-VGTDEMALGVIHGAQDRGLNVPN 267 (332)
T ss_dssp HHHHHTTTCCCCGGGEEECCSSHHHHHHHHHHHHHSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHcCCCCCeEEE-ECChHHHHHHHHHHHHcCCCCCC
Confidence 999999887542111111112333333445554333 455554 45667788899999999985443
No 112
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=97.68 E-value=0.00022 Score=67.75 Aligned_cols=202 Identities=11% Similarity=0.035 Sum_probs=116.9
Q ss_pred CeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHH
Q 008205 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI 109 (574)
Q Consensus 31 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 109 (574)
..-+||+++|.. ..+-.....+++.+.++. |+++.+.. .. ++..-.+....++++++.+|| ......
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~--~~-~~~~~~~~~~~l~~~~vdgiI-~~~~~~ 71 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTPK--------GYRLSVID--SL-TSQAGTDPITSALSMRPDGII-IAQDIP 71 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGGG--------TCEEEEEC--SS-SSCSSSCHHHHHHTTCCSEEE-EESCC-
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHHC--------CCEEEEEe--CC-CchHHHHHHHHHHhCCCCEEE-ecCCCC
Confidence 456899999864 323344555555544432 45555444 33 333333344556777888888 333222
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKL 189 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~ 189 (574)
...+.. .++|+|......+ .....+ .+.......+..+++.|...|.++++++...........+.+++.+
T Consensus 72 ~~~~~~----~~iPvV~~~~~~~--~~~~~~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~R~~gf~~~l 142 (280)
T 3gyb_A 72 DFTVPD----SLPPFVIAGTRIT--QASTHD---SVANDDFRGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEATM 142 (280)
T ss_dssp -----------CCCEEEESCCCS--SSCSTT---EEEECHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred hhhHhh----cCCCEEEECCCCC--CCCCCC---EEEechHHHHHHHHHHHHHCCCCeEEEEeCCCchHHHHHHHHHHHH
Confidence 222322 8999998754331 111222 3455677777888888888899999999865433555678888899
Q ss_pred hhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEE
Q 008205 190 AEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWI 255 (574)
Q Consensus 190 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i 255 (574)
++.|+.+.... .....+..+....++++-.. ..+.| ++++...+..+++++++.|+..++-+-|
T Consensus 143 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~vP~di~v 208 (280)
T 3gyb_A 143 RAHGLEPLSND-YLGPAVEHAGYTETLALLKEHPEVTAI-FSSNDITAIGALGAARELGLRVPEDLSI 208 (280)
T ss_dssp HHTTCCCEECC-CCSCCCHHHHHHHHHHHHHHCTTCCEE-EESSHHHHHHHHHHHHHHTCCTTTTCEE
T ss_pred HHcCcCCCccc-ccCCCCHHHHHHHHHHHHhCCCCCCEE-EECChHHHHHHHHHHHHcCCCCCCeeEE
Confidence 99887655332 22223333334444444332 34544 4456677888999999999865543333
No 113
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=97.67 E-value=0.00082 Score=63.99 Aligned_cols=207 Identities=10% Similarity=0.053 Sum_probs=119.7
Q ss_pred CCCeEEEEEEecc--CCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCC
Q 008205 29 IPPVLNIGAVFAL--NSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQF 106 (574)
Q Consensus 29 ~~~~i~IG~l~~~--~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~ 106 (574)
.....+||+++|. +..+-.....+++-+.++. |+++.+...+...+.. .+....+.++++.+||-...
T Consensus 8 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~--~~~~~~l~~~~vdgiIi~~~ 77 (289)
T 3g85_A 8 SQSKPTIALYWSSDISVNIISRFLRGLQSKLAKQ--------NYNYNVVICPYKTDCL--HLEKGISKENSFDAAIIANI 77 (289)
T ss_dssp ---CCEEEEEEETTSCGGGHHHHHHHHHHHHHHT--------TTCSEEEEEEECTTCG--GGCGGGSTTTCCSEEEESSC
T ss_pred cCCCceEEEEeccccchHHHHHHHHHHHHHHHHc--------CCeEEEEecCCCchhH--HHHHHHHhccCCCEEEEecC
Confidence 3456789999983 2333334556665555542 3444444332222211 12233455668888775444
Q ss_pred hHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCC--CcchHHH
Q 008205 107 SVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDH--GRNGIAA 184 (574)
Q Consensus 107 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~--g~~~~~~ 184 (574)
......+... ...++|+|......+ .+-.+.......+..+++.|...|-++++++...... .....+.
T Consensus 78 ~~~~~~~~~~-~~~~iPvV~~~~~~~--------~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g 148 (289)
T 3g85_A 78 SNYDLEYLNK-ASLTLPIILFNRLSN--------KYSSVNVDNYKMGEKASLLFAKKRYKSAAAILTESLNDAMDNRNKG 148 (289)
T ss_dssp CHHHHHHHHH-CCCSSCEEEESCCCS--------SSEEEEECHHHHHHHHHHHHHHTTCCBCEEEECCCSSHHHHHHHHH
T ss_pred CcccHHHHHh-ccCCCCEEEECCCCC--------CCCEEEeCHHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHH
Confidence 3333333333 367999998754322 2234566777777888888888899999999865432 3456788
Q ss_pred HHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEE
Q 008205 185 LGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWI 255 (574)
Q Consensus 185 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i 255 (574)
+++.+++.|+.+.....+....+..+....++++-+. ..+.| ++++...+..+++++++.|+..++-+-|
T Consensus 149 f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~vP~di~v 220 (289)
T 3g85_A 149 FIETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKAL-FCNSDSIALGVISVLNKRQISIPDDIEI 220 (289)
T ss_dssp HHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEE-EESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHHcCCCCChhheeccCCCHHHHHHHHHHHHcCCCCCcEE-EEcCCHHHHHHHHHHHHcCCCCCCceEE
Confidence 8899998887543111111112334444555555443 34544 3456677888999999999875544433
No 114
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=97.62 E-value=0.001 Score=63.50 Aligned_cols=207 Identities=14% Similarity=0.107 Sum_probs=122.6
Q ss_pred EEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCC-ChH--
Q 008205 33 LNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQ-FSV-- 108 (574)
Q Consensus 33 i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~-~s~-- 108 (574)
-+||+++|.. ..+-.....+++.+.++ .|+++. +.++..++..-.+....++++++.+||-.. .+.
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~ 85 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSE--------QGYSML--LTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQ 85 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHH--------TTCEEE--EEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSC
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHH--------CCCEEE--EEeCCCChHHHHHHHHHHHHCCCCEEEEeccccccc
Confidence 6899999875 22333455566555554 245544 455566776666677777888888877533 221
Q ss_pred -HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC-CCcchHHHHH
Q 008205 109 -IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD-HGRNGIAALG 186 (574)
Q Consensus 109 -~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~-~g~~~~~~l~ 186 (574)
........+...++|+|......+. .. +-.+..+....+..+++.|...|-++++++..... ......+.++
T Consensus 86 ~~~~~~~~~~~~~~iPvV~~~~~~~~---~~---~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf~ 159 (298)
T 3tb6_A 86 TPNIGYYLNLEKNGIPFAMINASYAE---LA---APSFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGFI 159 (298)
T ss_dssp CTTHHHHHHHHHTTCCEEEESSCCTT---CS---SCEEEECHHHHHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhcCCCEEEEecCcCC---CC---CCEEEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHHH
Confidence 2233445566779999987543221 11 22345567777788888888889999999986543 2335667888
Q ss_pred HHHhhcCcEEEEEeecCCCC-Ch-hhHHHHHHH-hhcC-C--CeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 187 DKLAEKRCRLSHKVPLSPKG-SR-NQIIDTLLT-VSSM-M--SRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~-~~-~~~~~~l~~-ik~~-~--~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
+.+++.|+.+.......... .. ......+++ ++.. + .+.| ++++...+..+++++++.|+..++-+-|+
T Consensus 160 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~vP~di~vv 234 (298)
T 3tb6_A 160 QAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAI-LCYNDEIALKVIDMLREMDLKVPEDMSIV 234 (298)
T ss_dssp HHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEE-ECSSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEE-EEeCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 88988886532111111000 01 111223333 2222 2 4544 34566778889999999998765544444
No 115
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=97.61 E-value=2.7e-05 Score=73.78 Aligned_cols=81 Identities=16% Similarity=0.222 Sum_probs=64.7
Q ss_pred CCceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhccccccccc
Q 008205 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKI 548 (574)
Q Consensus 469 ~~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~ 548 (574)
..+++|++.. .|+|+.... +..+.||.+|+++++++.+|++ ++++.. .|..++..|.+|++|++
T Consensus 41 ~~~l~v~~~~--~~~P~~~~~--~g~~~G~~~dl~~~i~~~~g~~--v~~~~~-------~~~~~~~~l~~G~~D~~--- 104 (272)
T 2pvu_A 41 KKKVVVGTDA--AFAPFEYMQ--KGKIVGFDVDLLDAVMKAAGLD--YELKNI-------GWDPLFASLQSKEVDMG--- 104 (272)
T ss_dssp CCCEEEEECC--CBTTTBEEE--TTEEESHHHHHHHHHHHHHTCC--EEEEEC-------CHHHHHHHHHHTSSSEE---
T ss_pred CCeEEEEECC--CCCCeEEec--CCeEEEEHHHHHHHHHHHhCCc--eEEEEC-------CHHHHHHHHhCCCCCEE---
Confidence 4678998853 455654432 4579999999999999999999 888877 69999999999999999
Q ss_pred ccceeeeEEEEeeCc----eeeecc
Q 008205 549 FFNLVILFAILANGG----FLVPCR 569 (574)
Q Consensus 549 ~~~~~~~~~~~~~~~----~~v~f~ 569 (574)
+++++++++|+ |+.|++
T Consensus 105 ----~~~~~~~~~r~~~~~~s~p~~ 125 (272)
T 2pvu_A 105 ----ISGITITDERKQSYDFSDPYF 125 (272)
T ss_dssp ----CSSCBCCHHHHTTEEECSCCE
T ss_pred ----EeCCcCCHHHHhcCccchhhh
Confidence 77778888887 445554
No 116
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=97.60 E-value=0.0018 Score=63.43 Aligned_cols=209 Identities=11% Similarity=0.034 Sum_probs=123.0
Q ss_pred CCeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChH
Q 008205 30 PPVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSV 108 (574)
Q Consensus 30 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~ 108 (574)
...-+||+++|.. ..+-.....+++.+.++ .|+++ .+.++..++..-.+....++.+++.+||-.....
T Consensus 66 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--------~g~~~--~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~ 135 (344)
T 3kjx_A 66 NRVNLVAVIIPSLSNMVFPEVLTGINQVLED--------TELQP--VVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEH 135 (344)
T ss_dssp SCCSEEEEEESCSSSSSHHHHHHHHHHHHTS--------SSSEE--EEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHHHHH--------CCCEE--EEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 3456899999864 22222333333333322 24655 4455666766666666777788887766422221
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcC---CCCcchHHHH
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD---DHGRNGIAAL 185 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~---~~g~~~~~~l 185 (574)
.. .....+...++|+|...... .. +....+..+...-+..+++.|...|.+++++|.... .......+.+
T Consensus 136 ~~-~~~~~l~~~~iPvV~i~~~~---~~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf 208 (344)
T 3kjx_A 136 SE-AARAMLDAAGIPVVEIMDSD---GK---PVDAMVGISHRRAGREMAQAILKAGYRRIGFMGTKMPLDYRARKRFEGF 208 (344)
T ss_dssp CH-HHHHHHHHCSSCEEEEEECS---SC---CSSEEEEECHHHHHHHHHHHHHHHTCCSCCEEESSTTTCHHHHHHHHHH
T ss_pred CH-HHHHHHHhCCCCEEEEeCCC---CC---CCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEecCcccCccHHHHHHHH
Confidence 22 33455667899999874211 11 222345566777777788877777999999998653 1234566788
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhh-c-CCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVS-S-MMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik-~-~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
++.+++.|+.+.....+....+...-...++++- . ...+.|+ +++...+..+++++++.|+..++-+-|+
T Consensus 209 ~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~disvv 280 (344)
T 3kjx_A 209 TEVLGKNGVEIEDREFYSGGSALAKGREMTQAMLERSPDLDFLY-YSNDMIAAGGLLYLLEQGIDIPGQIGLA 280 (344)
T ss_dssp HHHHHHTTCCCSCEEECSSCCCHHHHHHHHHHHHHHSTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHhcCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 8999988876543322221223333333343332 2 2455444 5566778889999999998765544444
No 117
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=97.60 E-value=0.0014 Score=62.87 Aligned_cols=203 Identities=9% Similarity=-0.014 Sum_probs=119.3
Q ss_pred CCeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChH
Q 008205 30 PPVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSV 108 (574)
Q Consensus 30 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~ 108 (574)
...-+||+++|.. ..+-.....+++.+.++. |+++. +.++..++..-.+....++.+++.+||-.....
T Consensus 13 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 82 (303)
T 3kke_A 13 SRSGTIGLIVPDVNNAVFADMFSGVQMAASGH--------STDVL--LGQIDAPPRGTQQLSRLVSEGRVDGVLLQRRED 82 (303)
T ss_dssp ----CEEEEESCTTSTTHHHHHHHHHHHHHHT--------TCCEE--EEECCSTTHHHHHHHHHHHSCSSSEEEECCCTT
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 3456799999864 323344555665555542 45544 445555555555556667777888877533332
Q ss_pred HHH-HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHH
Q 008205 109 IAH-LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAAL 185 (574)
Q Consensus 109 ~~~-~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l 185 (574)
... .+..+.. ++|+|......+. ..+ .+.......+...++.|...|-++++++..... ......+.+
T Consensus 83 ~~~~~~~~l~~--~iPvV~i~~~~~~----~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 153 (303)
T 3kke_A 83 FDDDMLAAVLE--GVPAVTINSRVPG----RVG---SVILDDQKGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEGY 153 (303)
T ss_dssp CCHHHHHHHHT--TSCEEEESCCCTT----CCC---EEEECHHHHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHHH
T ss_pred CcHHHHHHHhC--CCCEEEECCcCCC----CCC---EEEECcHHHHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHHH
Confidence 223 4444444 9999987543321 222 345566667777778887789999999985433 234567788
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHh-----hcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCe
Q 008205 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTV-----SSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGY 252 (574)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i-----k~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~ 252 (574)
++.+++.|+.+..........+...-...++++ -+. ..+.| ++++...+..+++++++.|+..++-
T Consensus 154 ~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai-~~~nd~~A~g~~~al~~~G~~vP~d 226 (303)
T 3kke_A 154 LETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDGPTAV-VVASVNAAVGALSTALRLGLRVPED 226 (303)
T ss_dssp HHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCSEE-EESSHHHHHHHHHHHHHTTCCTTTT
T ss_pred HHHHHHcCCCCCcceEEecCCChHHHHHHHHHhcchhhhcCCCCCcEE-EECCHHHHHHHHHHHHHcCCCCCCc
Confidence 889998887543111111112333334455555 333 34444 4456677888999999999875543
No 118
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=97.59 E-value=0.00067 Score=66.12 Aligned_cols=203 Identities=13% Similarity=0.053 Sum_probs=119.1
Q ss_pred CCeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChH
Q 008205 30 PPVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSV 108 (574)
Q Consensus 30 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~ 108 (574)
....+||+++|.. ..+......+++.+.++ .|+++.+ .++..++....+....++.+++.+|| .....
T Consensus 58 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~~~ 126 (330)
T 3ctp_A 58 KNSKTIGLMVPNISNPFFNQMASVIEEYAKN--------KGYTLFL--CNTDDDKEKEKTYLEVLQSHRVAGII-ASRSQ 126 (330)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEE-EETCC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHH--------CCCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEE-ECCCC
Confidence 3457899999864 22223445555555543 2465544 45556666655666677778888888 43322
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHH
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALG 186 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~ 186 (574)
.. ..+...++|+|......+. ..+ .+..++...+..+++.|...|.+++++|..... ......+.++
T Consensus 127 ~~----~~l~~~~iPvV~~~~~~~~----~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 195 (330)
T 3ctp_A 127 CE----DEYANIDIPVVAFENHILD----NII---TISSDNYNGGRMAFDHLYEKGCRKILHIKGPEVFEATELRYKGFL 195 (330)
T ss_dssp CS----GGGTTCCSCEEEESSCCCT----TSC---EEEECHHHHHHHHHHHHHHTTCCSEEEEECCTTCHHHHHHHHHHH
T ss_pred CH----HHHHhcCCCEEEEeccCCC----CCC---EEEeCHHHHHHHHHHHHHHCCCCeEEEEeCCccCccHHHHHHHHH
Confidence 11 2345679999987543221 222 344566666677778777779999999986543 2345677888
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc-CCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-MMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~-~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
+.+++.|+.+. ...+....+..+-...++++.+ ..++.|+ +++...+..+++++++.|+..++-+-|+
T Consensus 196 ~al~~~g~~~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~-~~~d~~A~g~~~al~~~G~~vP~disvv 264 (330)
T 3ctp_A 196 DGARAKDLEID-FIEFQHDFQVKMLEEDINSMKDIVNYDGIF-VFNDIAAATVMRALKKRGVSIPQEVQII 264 (330)
T ss_dssp HHHHHTTCCCE-EEECSSSCCGGGGGCCCTTGGGGGGSSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHcCCCcc-eeEEcCCCCHHHHHHHHHHHhcCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 89999987654 2222211122111122233222 2455554 4456678889999999998655444443
No 119
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=97.56 E-value=3.7e-05 Score=73.40 Aligned_cols=82 Identities=17% Similarity=0.113 Sum_probs=64.0
Q ss_pred CceEEeccCccccccceeccCCCcccceeeHHHHHHHHHh----CC---CCcCeEEEECCCCCCCCChHHHHHHhhhccc
Q 008205 470 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLEL----LP---YAVPYKLVPFGDGHNSPKRFDLLRLVSEEVS 542 (574)
Q Consensus 470 ~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~----l~---f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~ 542 (574)
++++|++.. .|+|+.... .+.++.||++|+++++++. +| ++ ++++.. .|+.++..|.+|++
T Consensus 17 ~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~ia~~l~~~~G~~~~~--v~~~~~-------~~~~~~~~l~~g~~ 84 (287)
T 2vha_A 17 GVIVVGHRE--SSVPFSYYD-NQQKVVGYSQDYSNAIVEAVKKKLNKPDLQ--VKLIPI-------TSQNRIPLLQNGTF 84 (287)
T ss_dssp TEEEEEECS--EETTTEEEC-SSSCEESHHHHHHHHHHHHHHHHTTCTTCE--EEEEEC-------CTTTHHHHHHTTSC
T ss_pred CeEEEEEcC--CCCCceEEC-CCCCcccccHHHHHHHHHHHHHhcCCCCce--EEEEEC-------CHHHHHHHHHCCCe
Confidence 568888843 456665432 2457999999999999976 57 66 888777 79999999999999
Q ss_pred ccccccccceeeeEEEEeeCc----eeeeccc
Q 008205 543 MKRKKIFFNLVILFAILANGG----FLVPCRS 570 (574)
Q Consensus 543 d~~~~~~~~~~~~~~~~~~~~----~~v~f~~ 570 (574)
|++ +++++++++|+ |+.|++.
T Consensus 85 D~~-------~~~~~~t~~r~~~~~~s~p~~~ 109 (287)
T 2vha_A 85 DFE-------CGSTTNNVERQKQAAFSDTIFV 109 (287)
T ss_dssp SEE-------CSSCBCCHHHHTTCEEEEEEEE
T ss_pred eEE-------eccccCCcchhhcccccceeee
Confidence 999 77788888886 6666654
No 120
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=97.56 E-value=0.0021 Score=61.36 Aligned_cols=206 Identities=8% Similarity=0.005 Sum_probs=116.8
Q ss_pred CeEEEEEEeccC-----CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCC
Q 008205 31 PVLNIGAVFALN-----STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQ 105 (574)
Q Consensus 31 ~~i~IG~l~~~~-----~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~ 105 (574)
..-+||+++|.. ..+-.....+++.+.++ .|+++.+...+. .+.. .+....+..+++.+||-..
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~~~~-~~~~--~~~~~~l~~~~vdGiIi~~ 73 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGK--------RGLDLLLIPDEP-GEKY--QSLIHLVETRRVDALIVAH 73 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHH--------TTCEEEEEEECT-TCCC--HHHHHHHHHTCCSEEEECS
T ss_pred ccceEEEEecCCCccccChhHHHHHHHHHHHHHH--------CCCEEEEEeCCC-hhhH--HHHHHHHHcCCCCEEEEeC
Confidence 456899999832 22222344444444443 256666655443 2111 1222334456788776432
Q ss_pred ChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCC--CcchHH
Q 008205 106 FSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDH--GRNGIA 183 (574)
Q Consensus 106 ~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~--g~~~~~ 183 (574)
..... .....+...++|+|......+ . +.+-.+.......+..+++.|...|-++++++...... .....+
T Consensus 74 ~~~~~-~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~ 146 (294)
T 3qk7_A 74 TQPED-FRLQYLQKQNFPFLALGRSHL---P---KPYAWFDFDNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRLQ 146 (294)
T ss_dssp CCSSC-HHHHHHHHTTCCEEEESCCCC---S---SCCEEEEECHHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHH
T ss_pred CCCCh-HHHHHHHhCCCCEEEECCCCC---C---CCCCEEEcChHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHHH
Confidence 22111 233456677999998754321 1 22334566777777778888888899999999866432 335678
Q ss_pred HHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEE
Q 008205 184 ALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWI 255 (574)
Q Consensus 184 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i 255 (574)
.+++.+++.|+.+..........+..+-...++++-+. ..+.| ++++...+..+++++++.|+..++-+-|
T Consensus 147 Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai-~~~nd~~A~g~~~al~~~G~~vP~di~v 219 (294)
T 3qk7_A 147 GYVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPPTAI-ITDCNMLGDGVASALDKAGLLGGEGISL 219 (294)
T ss_dssp HHHHHHHTTTCCCCTTCEEEECSSHHHHHHHHHHHHHSSSCCSEE-EESSHHHHHHHHHHHHHTTCSSTTSCEE
T ss_pred HHHHHHHHCCCCCChhHeecCCCCHHHHHHHHHHHHcCCCCCcEE-EECCHHHHHHHHHHHHHcCCCCCCceEE
Confidence 88889998886532110011112333333444444333 44544 4456677888999999999876544333
No 121
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=97.52 E-value=0.0094 Score=58.54 Aligned_cols=208 Identities=14% Similarity=0.111 Sum_probs=121.4
Q ss_pred CeEEEEEEeccCC-ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHH
Q 008205 31 PVLNIGAVFALNS-TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI 109 (574)
Q Consensus 31 ~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 109 (574)
..-.||+++|... .+-.....+++.+.++ .|+++. +.++..++..-.+....++.+++.+||-......
T Consensus 69 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~ 138 (355)
T 3e3m_A 69 RSGFVGLLLPSLNNLHFAQTAQSLTDVLEQ--------GGLQLL--LGYTAYSPEREEQLVETMLRRRPEAMVLSYDGHT 138 (355)
T ss_dssp --CEEEEEESCSBCHHHHHHHHHHHHHHHH--------TTCEEE--EEECTTCHHHHHHHHHHHHHTCCSEEEEECSCCC
T ss_pred CCCEEEEEeCCCCchHHHHHHHHHHHHHHH--------CCCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 3457999998642 1112334444444443 246554 4455566666555666677778877664222222
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCC---CcchHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDH---GRNGIAALG 186 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~---g~~~~~~l~ 186 (574)
. .....+...++|+|...... .. +....+..+...-+..+++.|...|-+++++|...... .....+.++
T Consensus 139 ~-~~~~~l~~~~iPvV~i~~~~---~~---~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf~ 211 (355)
T 3e3m_A 139 E-QTIRLLQRASIPIVEIWEKP---AH---PIGHTVGFSNERAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGFK 211 (355)
T ss_dssp H-HHHHHHHHCCSCEEEESSCC---SS---CSSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHH
T ss_pred H-HHHHHHHhCCCCEEEECCcc---CC---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHHH
Confidence 2 23445667899999863211 11 22235666777777778888888899999999875432 345778899
Q ss_pred HHHhhcCcEEEEEeec-CCCCChhhHHHHHHHhh-c-CCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 187 DKLAEKRCRLSHKVPL-SPKGSRNQIIDTLLTVS-S-MMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 187 ~~~~~~g~~v~~~~~~-~~~~~~~~~~~~l~~ik-~-~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
+.+++.|+.+.....+ ....+..+-...++++- . ..++.| ++++...+..+++++++.|+..++-+-|+
T Consensus 212 ~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai-~~~nD~~A~g~~~al~~~G~~vP~disvi 283 (355)
T 3e3m_A 212 RAMREAGLNPDQEIRLGAPPLSIEDGVAAAELILQEYPDTDCI-FCVSDMPAFGLLSRLKSIGVAVPEQVSVV 283 (355)
T ss_dssp HHHHHTTSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTTCCEE-EESSHHHHHHHHHHHHHHTCCTTTTCEEE
T ss_pred HHHHHCCcCCCccEEEecCCCCHHHHHHHHHHHHcCCCCCcEE-EECChHHHHHHHHHHHHcCCCCCCceEEE
Confidence 9999988754311111 11122233333344432 2 245544 44566778889999999998765544443
No 122
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=97.52 E-value=0.0044 Score=60.76 Aligned_cols=206 Identities=11% Similarity=0.027 Sum_probs=114.6
Q ss_pred CeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHH
Q 008205 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI 109 (574)
Q Consensus 31 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 109 (574)
..-+||+++|.. ..+......+++.+.++ .|+++.+ .++..++....+....++.+++.+||-......
T Consensus 65 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 134 (348)
T 3bil_A 65 RSNTIGVIVPSLINHYFAAMVTEIQSTASK--------AGLATII--TNSNEDATTMSGSLEFLTSHGVDGIICVPNEEC 134 (348)
T ss_dssp ---CEEEEESCSSSHHHHHHHHHHHHHHHH--------TTCCEEE--EECTTCHHHHHHHHHHHHHTTCSCEEECCCGGG
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 356799999863 22222344455444443 2455544 445556655555566677778887775333322
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALGD 187 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~~ 187 (574)
... ...+...++|+|......+. ....+ .+..++..-+..+++.|...|.+++++|..... ......+.+++
T Consensus 135 ~~~-~~~l~~~~iPvV~i~~~~~~--~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 208 (348)
T 3bil_A 135 ANQ-LEDLQKQGMPVVLVDRELPG--DSTIP---TATSNPQPGIAAAVELLAHNNALPIGYLSGPMDTSTGRERLEDFKA 208 (348)
T ss_dssp HHH-HHHHHHC-CCEEEESSCCSC--C-CCC---EEEEECHHHHHHHHHHHHHTTCCSEEEECCCTTSHHHHHHHHHHHH
T ss_pred hHH-HHHHHhCCCCEEEEcccCCC--CCCCC---EEEeChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHH
Confidence 223 33445679999987543221 01222 344456656677777777789999999975432 23456778888
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEE
Q 008205 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWI 255 (574)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i 255 (574)
.+++.|+..... +....+..+-...++++-+...- .|++++...+..+++++++.|+..++-+-|
T Consensus 209 al~~~g~~~~~v--~~~~~~~~~~~~~~~~ll~~~~~-ai~~~nD~~A~g~~~al~~~G~~vP~disv 273 (348)
T 3bil_A 209 ACANSKIGEQLV--FLGGYEQSVGFEGATKLLDQGAK-TLFAGDSMMTIGVIEACHKAGLVIGKDVSV 273 (348)
T ss_dssp HHHHTTCCCCEE--ECCCSSHHHHHHHHHHHHHTTCS-EEEESSHHHHHHHHHHHHHTTCCBTTTBEE
T ss_pred HHHHcCcCccEE--EcCCCCHHHHHHHHHHHHcCCCC-EEEEcChHHHHHHHHHHHHcCCCCCCCeEE
Confidence 898888622111 11112333333444444333222 444556667888999999999865543333
No 123
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=97.50 E-value=0.0012 Score=62.49 Aligned_cols=202 Identities=9% Similarity=0.107 Sum_probs=112.9
Q ss_pred CeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHH
Q 008205 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI 109 (574)
Q Consensus 31 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 109 (574)
..-+||+++|.. ..+-.....+++.+.++. |+++. +.+...++..-.+....++.+++.+||-...+
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~~-- 74 (277)
T 3e61_A 7 KSKLIGLLLPDMSNPFFTLIARGVEDVALAH--------GYQVL--IGNSDNDIKKAQGYLATFVSHNCTGMISTAFN-- 74 (277)
T ss_dssp ---CEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCCEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECGGG--
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC--
Confidence 456799999864 222233445555444442 45444 45566666665566667777888887753322
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALGD 187 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~~ 187 (574)
...+...+...++|+|......+. +. .+.......+..+++.|...|.++++++..... ......+.+++
T Consensus 75 ~~~~~~~l~~~~iPvV~~~~~~~~------~~--~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 146 (277)
T 3e61_A 75 ENIIENTLTDHHIPFVFIDRINNE------HN--GISTNHFKGGQLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQGIKY 146 (277)
T ss_dssp HHHHHHHHHHC-CCEEEGGGCC-----------------HHHHHHHHHHHHHHTTCCSEEEEESCTTSHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCEEEEeccCCC------CC--eEEechHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHH
Confidence 222331566779999987543321 11 566677777788888888889999999985532 23456778888
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEe
Q 008205 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVT 257 (574)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~ 257 (574)
.+++.|+.+.. .... ..+..+....+.. ....+.| ++.+...+..++++++++|+..++-+-|++
T Consensus 147 ~l~~~~~~~~~-~~~~-~~~~~~~~~~l~~--~~~~~ai-~~~~d~~a~g~~~al~~~g~~vP~di~vig 211 (277)
T 3e61_A 147 ILDQQRIDYKM-LEAT-LLDNDKKFIDLIK--ELSIDSI-ICSNDLLAINVLGIVQRYHFKVPAEIQIIG 211 (277)
T ss_dssp HHHC---CEEE-EEGG-GGGSHHHHHHHHH--HHTCCEE-EESSHHHHHHHHHHHHHTTCCTTTTCEEEC
T ss_pred HHHHcCCCccc-eecC-CCCHHHHHHHhhc--CCCCCEE-EECCcHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 99988876654 1111 1111222222222 2345544 445667788899999999987655444443
No 124
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=97.45 E-value=0.01 Score=55.90 Aligned_cols=200 Identities=9% Similarity=-0.042 Sum_probs=113.4
Q ss_pred CCeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChH
Q 008205 30 PPVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSV 108 (574)
Q Consensus 30 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~ 108 (574)
....+||+++|.. ..+-.....+++.+.++ .|+++.+. +...++..-. ++ ++.+||-.....
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~--~~~~~~~~~~----~~---~vdgiI~~~~~~ 68 (277)
T 3cs3_A 6 RQTNIIGVYLADYGGSFYGELLEGIKKGLAL--------FDYEMIVC--SGKKSHLFIP----EK---MVDGAIILDWTF 68 (277)
T ss_dssp CCCCEEEEEECSSCTTTHHHHHHHHHHHHHT--------TTCEEEEE--ESTTTTTCCC----TT---TCSEEEEECTTS
T ss_pred cCCcEEEEEecCCCChhHHHHHHHHHHHHHH--------CCCeEEEE--eCCCCHHHHh----hc---cccEEEEecCCC
Confidence 3556899999863 22223344444444432 24665543 3333221110 11 666655422211
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHHH
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALG 186 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l~ 186 (574)
....+ ..+...++|+|......+ . +.+..+..++...+..+++.|...|.++++++..... ......+.++
T Consensus 69 ~~~~~-~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 141 (277)
T 3cs3_A 69 PTKEI-EKFAERGHSIVVLDRTTE---H---RNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVST 141 (277)
T ss_dssp CHHHH-HHHHHTTCEEEESSSCCC---S---TTEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHH
T ss_pred CHHHH-HHHHhcCCCEEEEecCCC---C---CCCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHHH
Confidence 12233 334557999998743221 1 2344566677777777788877789999999986532 2345677888
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC---CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEe
Q 008205 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM---MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVT 257 (574)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~---~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~ 257 (574)
+.+++.|+.+. . +....+..+-...++++.+. ..+.| ++.+...+..+++++++.|+..++-+.|++
T Consensus 142 ~~l~~~g~~~~-~--~~~~~~~~~~~~~~~~~l~~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~vP~di~vvg 211 (277)
T 3cs3_A 142 RELTRFGIPYE-I--IQGDFTEPSGYAAAKKILSQPQTEPVDV-FAFNDEMAIGVYKYVAETNYQMGKDIRIIG 211 (277)
T ss_dssp HHHHHTTCCEE-E--EECCSSHHHHHHHHHHHTTSCCCSSEEE-EESSHHHHHHHHHHHTTSSCCBTTTEEEEC
T ss_pred HHHHHcCCCee-E--EeCCCChhHHHHHHHHHHhcCCCCCcEE-EEcChHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 88988887654 1 11112333344555555443 34544 445666788899999999986555455543
No 125
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=97.43 E-value=0.0021 Score=60.77 Aligned_cols=198 Identities=11% Similarity=0.051 Sum_probs=122.2
Q ss_pred CCeEEEEEEeccCC-ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChH
Q 008205 30 PPVLNIGAVFALNS-TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSV 108 (574)
Q Consensus 30 ~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~ 108 (574)
...-+||+++|... .+-.....+++.+.++. |+++ +.+.++..++..-.+....++.+++.+||-.. .
T Consensus 8 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~-~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~-~- 76 (277)
T 3hs3_A 8 KKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKE--------GYTA-LISFSTNSDVKKYQNAIINFENNNVDGIITSA-F- 76 (277)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCEE-EEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC-C-
T ss_pred CCCCEEEEEeCCCCChhHHHHHHHHHHHHHHC--------CCCE-EEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc-h-
Confidence 45678999998742 22233445555444441 4540 44566666776666666677778888877433 1
Q ss_pred HHHHHHHhhccCCccEEecccC-CCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC--CCcchHHHH
Q 008205 109 IAHLVSHIANEFQVPLLSFAAT-DPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAAL 185 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~-~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~--~g~~~~~~l 185 (574)
....+...++|+|..... .+ + +.+ .+......-+...++.|. .|.++++++..... ......+.+
T Consensus 77 ----~~~~~~~~~iPvV~~~~~~~~---~---~~~-~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~Gf 144 (277)
T 3hs3_A 77 ----TIPPNFHLNTPLVMYDSANIN---D---DIV-RIVSNNTKGGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEAM 144 (277)
T ss_dssp ----CCCTTCCCSSCEEEESCCCCC---S---SSE-EEEECHHHHHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHHH
T ss_pred ----HHHHHHhCCCCEEEEcccccC---C---CCE-EEEEChHHHHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHHH
Confidence 122346679999987543 21 1 233 667777777777788777 89999999985532 234567788
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~--~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
++.+++.|+.+... .... +.+ ...++++-+ ...+.| ++.+...+..+++++++.|+..++-+-|+
T Consensus 145 ~~~l~~~g~~~~~~-~~~~--~~~--~~~~~~~l~~~~~~~ai-~~~~d~~A~g~~~al~~~g~~vP~di~vi 211 (277)
T 3hs3_A 145 TAEASKLKIDYLLE-ETPE--NNP--YISAQSALNKSNQFDAI-ITVNDLYAAEIIKEAKRRNLKIPDDFQLV 211 (277)
T ss_dssp HHHHHHTTCEEEEE-ECCS--SCH--HHHHHHHHHTGGGCSEE-ECSSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHCCCCCCCC-CccC--Cch--HHHHHHHHcCCCCCCEE-EECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 89999999877654 3321 111 333444332 234544 34566678889999999998765544443
No 126
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=97.43 E-value=5e-05 Score=71.52 Aligned_cols=83 Identities=17% Similarity=0.185 Sum_probs=65.5
Q ss_pred CceEEeccCccccccceec--cCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhcccccccc
Q 008205 470 RHLRIGVPSQVIYPEFVAQ--GKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKK 547 (574)
Q Consensus 470 ~~~~v~~~~~~~~~~~~~~--~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~ 547 (574)
++++|++.. .|+|+... ..++..+.||++|+++++++.+|++ ++++.. .|..++..|.+|++|++
T Consensus 39 ~~l~v~~~~--~~~P~~~~~~~~~~g~~~G~~~dl~~~~~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~-- 105 (269)
T 4i62_A 39 GKLVVALNP--DFAPFEYQKVVDGKNQIVGSDIELAKAIATELGVE--LELSPM-------SFDNVLASVQSGKADLA-- 105 (269)
T ss_dssp TEEEEEECS--CBTTTBEEEEETTEEEEESHHHHHHHHHHHHHTCE--EEEEEC-------CHHHHHHHHHTTSCSEE--
T ss_pred CeEEEEecC--CCCCceeecccCCCCcEeeecHHHHHHHHHHHCCc--eEEEEc-------CHHHHHHHHhCCCccEE--
Confidence 467888743 35555431 2345689999999999999999998 888887 89999999999999999
Q ss_pred cccceeeeEEEEeeCc----eeeeccc
Q 008205 548 IFFNLVILFAILANGG----FLVPCRS 570 (574)
Q Consensus 548 ~~~~~~~~~~~~~~~~----~~v~f~~ 570 (574)
+++++.+++|+ |+.|++.
T Consensus 106 -----~~~~~~~~~r~~~~~~s~p~~~ 127 (269)
T 4i62_A 106 -----ISGVSKTDERSKVFDFSTPYYT 127 (269)
T ss_dssp -----CSSCBCCHHHHTTEEECSCCEE
T ss_pred -----ecCCcCCHhHhhceecccchhh
Confidence 77788888887 4555543
No 127
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=97.42 E-value=0.0038 Score=60.98 Aligned_cols=206 Identities=13% Similarity=0.039 Sum_probs=122.6
Q ss_pred CeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCChH
Q 008205 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSV 108 (574)
Q Consensus 31 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~ 108 (574)
..-+||+++|.. ..+-.....+++.+.++ .|+++ .+.++..++..-.+....++.+++.+||- |....
T Consensus 61 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~ 130 (339)
T 3h5o_A 61 KSRTVLVLIPSLANTVFLETLTGIETVLDA--------AGYQM--LIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHA 130 (339)
T ss_dssp --CEEEEEESCSTTCTTHHHHHHHHHHHHH--------TTCEE--EEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHH--------CCCEE--EEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 346799999864 22334556666666555 24654 44556667666666667777788887663 22221
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCC-CCcchHHHHHH
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD-HGRNGIAALGD 187 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~-~g~~~~~~l~~ 187 (574)
. .....+...++|+|...... .. +.. .+..+...-+..+++.|...|.++++++..... ......+.+++
T Consensus 131 ~--~~~~~l~~~~iPvV~~~~~~---~~---~~~-~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~ 201 (339)
T 3h5o_A 131 E--PFERILSQHALPVVYMMDLA---DD---GRC-CVGFSQEDAGAAITRHLLSRGKRRIGFLGAQLDERVMKRLDGYRA 201 (339)
T ss_dssp T--THHHHHHHTTCCEEEEESCC---SS---SCC-EEECCHHHHHHHHHHHHHHTTCCSEEEEEESCCHHHHHHHHHHHH
T ss_pred H--HHHHHHhcCCCCEEEEeecC---CC---CCe-EEEECHHHHHHHHHHHHHHCCCCeEEEEeCCCCccHHHHHHHHHH
Confidence 1 23445667899999864221 11 122 566677777777888888889999999986642 23346677888
Q ss_pred HHhhcCcEEE-EEeecCCCCChhhHHHHHHHhhc--CCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 188 KLAEKRCRLS-HKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 188 ~~~~~g~~v~-~~~~~~~~~~~~~~~~~l~~ik~--~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
.+++.|+... .........+...-...++++-+ ..++.|+ +++...+..+++++++.|+..++-+-|+
T Consensus 202 al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disvv 272 (339)
T 3h5o_A 202 ALDAADCRDAGLEWLDPQPSSMQMGADMLDRALAERPDCDALF-CCNDDLAIGALARSQQLGIAVPERLAIA 272 (339)
T ss_dssp HHHHTTCCCGGGEEEECSCCCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHCCCCCCChheEecCCCCHHHHHHHHHHHHcCCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCCEEEE
Confidence 8888876211 00011111233333344444332 2455444 4566778889999999998766544443
No 128
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=97.40 E-value=0.024 Score=53.13 Aligned_cols=203 Identities=13% Similarity=0.094 Sum_probs=113.7
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCChHHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 111 (574)
+||++.|.. ..+-.....+++.+.++. |+++. +.++..++..-.+....++.+++.+||- |.......
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (271)
T 2dri_A 3 TIALVVSTLNNPFFVSLKDGAQKEADKL--------GYNLV--VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVG 72 (271)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEE--EEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHHc--------CcEEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 589998763 222223445555555442 45544 3455556655555566677778888764 33333222
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHc--CCeEEEEEEEcCCC--CcchHHHHHH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVDDDH--GRNGIAALGD 187 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~--~W~~v~ii~~~~~~--g~~~~~~l~~ 187 (574)
.....+...++|+|......+ .. +..-.+...+..-+...++.|... +-++++++...... .....+.+++
T Consensus 73 ~~~~~~~~~~iPvV~i~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (271)
T 2dri_A 73 NAVKMANQANIPVITLDRQAT---KG--EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 147 (271)
T ss_dssp HHHHHHHHTTCCEEEESSCCS---SS--CCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEecCCCC---CC--ceeEEEecChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHH
Confidence 223445567999998743221 11 111234456666666677765554 56899999854322 2456677888
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~--~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
.+++.|+.+..... . ..+...-...++++-. ...+ -|++.+...+.-+++++++.|+ .+...+.
T Consensus 148 al~~~g~~~~~~~~-~-~~~~~~~~~~~~~ll~~~~~~~-ai~~~nD~~A~g~~~al~~~g~--~dv~vvG 213 (271)
T 2dri_A 148 AVAAHKFNVLASQP-A-DFDRIKGLNVMQNLLTAHPDVQ-AVFAQNDEMALGALRALQTAGK--SDVMVVG 213 (271)
T ss_dssp HHHHHTCEEEEEEE-C-TTCHHHHHHHHHHHHHHCTTCC-EEEESSHHHHHHHHHHHHHHTC--CSCEEEE
T ss_pred HHhcCCCEEEEecC-C-CCCHHHHHHHHHHHHHhCCCcc-EEEECCCcHHHHHHHHHHHcCC--CCcEEEE
Confidence 99888987643211 1 1233333333444322 2344 3445566778899999999987 3444443
No 129
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=97.39 E-value=7.2e-05 Score=71.64 Aligned_cols=82 Identities=17% Similarity=0.166 Sum_probs=64.5
Q ss_pred CceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhC---CCCcCeEEEECCCCCCCCChHHHHHHhhhccccccc
Q 008205 470 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELL---PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRK 546 (574)
Q Consensus 470 ~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l---~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~ 546 (574)
++++|++.. .++|+.... .+..+.||.+|+++++++.+ |++ ++++.. .|+.++..|.+|++|++
T Consensus 44 ~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~~~~g~~--~~~~~~-------~~~~~~~~l~~G~~D~~- 110 (292)
T 1xt8_A 44 GVVRIGVFG--DKPPFGYVD-EKGNNQGYDIALAKRIAKELFGDENK--VQFVLV-------EAANRVEFLKSNKVDII- 110 (292)
T ss_dssp SSEEEEECS--EETTTEEEC-TTSCEESHHHHHHHHHHHHHHSCTTC--EEEEEC-------CGGGHHHHHHTTSCSEE-
T ss_pred CeEEEEECC--CCCCeeEEC-CCCCEeeEhHHHHHHHHHHhccCCce--EEEEEc-------CHHHHHHHHhCCCeeEE-
Confidence 567888743 355655432 34579999999999999999 999 888887 79999999999999999
Q ss_pred ccccceeeeEEEEeeCc----eeeeccc
Q 008205 547 KIFFNLVILFAILANGG----FLVPCRS 570 (574)
Q Consensus 547 ~~~~~~~~~~~~~~~~~----~~v~f~~ 570 (574)
+++++++++|+ |+.|++.
T Consensus 111 ------~~~~~~~~~r~~~~~~s~p~~~ 132 (292)
T 1xt8_A 111 ------LANFTQTPQRAEQVDFCSPYMK 132 (292)
T ss_dssp ------CSSCBCCHHHHTTEEECCCCEE
T ss_pred ------eecCCCCcchhcceeeecccee
Confidence 77777888887 5555543
No 130
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=97.38 E-value=6.4e-05 Score=70.71 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=64.6
Q ss_pred CCceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhccccccccc
Q 008205 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKI 548 (574)
Q Consensus 469 ~~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~ 548 (574)
.++++|++.. .++|+... ..+.++.||++|+++++++.+|++ ++++.. .|..++..|.+|++|++
T Consensus 30 ~~~l~v~~~~--~~~P~~~~-~~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~--- 94 (268)
T 3qax_A 30 NRIWIVGTNA--TYPPFEYV-DAQGEVVGFDIDLAKAISEKLGKQ--LEVREF-------AFDALILNLKKHRIDAI--- 94 (268)
T ss_dssp -CEEEEEECS--CBTTTBEE-CTTSCEESHHHHHHHHHHHHHTCE--EEEEEC-------CGGGHHHHHHHTSSSEE---
T ss_pred CCeEEEEECC--CCCCceEE-CCCCCEEEEEHHHHHHHHHHhCCe--EEEEec-------CHHHHHHHHhCCCccEE---
Confidence 3567888743 34555433 235579999999999999999988 888887 89999999999999999
Q ss_pred ccceeeeEEEEeeCc----eeeecc
Q 008205 549 FFNLVILFAILANGG----FLVPCR 569 (574)
Q Consensus 549 ~~~~~~~~~~~~~~~----~~v~f~ 569 (574)
+++++.+++|+ | .|++
T Consensus 95 ----~~~~~~~~~r~~~~~~-~p~~ 114 (268)
T 3qax_A 95 ----LAGMSITPSRQKEIAL-LPYY 114 (268)
T ss_dssp ----CSCCBCCHHHHTTSEE-EEEE
T ss_pred ----eecCccCHhHhcceee-ecce
Confidence 77888999987 5 6665
No 131
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=97.34 E-value=0.0054 Score=58.79 Aligned_cols=202 Identities=13% Similarity=0.110 Sum_probs=117.6
Q ss_pred CCeEEEEEEeccC------CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc
Q 008205 30 PPVLNIGAVFALN------STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG 103 (574)
Q Consensus 30 ~~~i~IG~l~~~~------~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG 103 (574)
...-+||+++|.. ..+-.....+++.+.++. |+++ .+.+...++..-.+....+..+++.+||-
T Consensus 20 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiIi 89 (305)
T 3huu_A 20 NKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVR--------GYST--RMTVSENSGDLYHEVKTMIQSKSVDGFIL 89 (305)
T ss_dssp -CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHH--------TCEE--EECCCSSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHC--------CCEE--EEEeCCCChHHHHHHHHHHHhCCCCEEEE
Confidence 3456899999872 222233445555555543 4544 44555555544444455566678888764
Q ss_pred CCChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCC--Ccch
Q 008205 104 PQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDH--GRNG 181 (574)
Q Consensus 104 p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~--g~~~ 181 (574)
....... .....+...++|+|...... .. +.+-.+......-+..+++.|...|-++++++...... ....
T Consensus 90 ~~~~~~~-~~~~~l~~~~iPvV~i~~~~---~~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R 162 (305)
T 3huu_A 90 LYSLKDD-PIEHLLNEFKVPYLIVGKSL---NY---ENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTEDR 162 (305)
T ss_dssp SSCBTTC-HHHHHHHHTTCCEEEESCCC---SS---TTCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCBHHHHHH
T ss_pred eCCcCCc-HHHHHHHHcCCCEEEECCCC---cc---cCCcEEEeCHHHHHHHHHHHHHHCCCCeEEEEcCCcccchhHHH
Confidence 3222222 23445567799999875432 11 22334566777777778888888899999999866443 3456
Q ss_pred HHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHh-hc--CCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeE
Q 008205 182 IAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTV-SS--MMSRILILHTYDIWGLEVLNAAKHLRMMESGYV 253 (574)
Q Consensus 182 ~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i-k~--~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~ 253 (574)
.+.+++.+++.|+.+.. . +. .+.+.-...++++ -+ ...+.| ++++...+..+++++++.|+..++-+
T Consensus 163 ~~Gf~~~l~~~g~~~~~-~-~~--~~~~~~~~~~~~~~l~~~~~~~ai-~~~nd~~A~g~~~al~~~g~~vP~di 232 (305)
T 3huu_A 163 SVGFKQYCDDVKISNDC-V-VI--KSMNDLRDFIKQYCIDASHMPSVI-ITSDVMLNMQLLNVLYEYQLRIPEDI 232 (305)
T ss_dssp HHHHHHHHHHTTCCCCE-E-EE--CSHHHHHHHC--------CCCSEE-EESSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHHHHHHcCCCccc-E-Ee--cCcHHHHHHHHHhhhcCCCCCCEE-EECChHHHHHHHHHHHHcCCCCCcce
Confidence 77888999988876543 1 11 1111122333444 22 244544 34566778889999999998655433
No 132
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=97.34 E-value=0.017 Score=53.52 Aligned_cols=197 Identities=15% Similarity=0.081 Sum_probs=116.7
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 112 (574)
+||+++|.. ..+-.....+++.+.++. |+++.+ .++..++..-.+....+..+++.+||-........
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~- 72 (255)
T 1byk_A 4 VVAIIVTRLDSLSENLAVQTMLPAFYEQ--------GYDPIM--MESQFSPQLVAEHLGVLKRRNIDGVVLFGFTGITE- 72 (255)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHTTTCCEEEEECCTTCCT-
T ss_pred EEEEEeCCCCCccHHHHHHHHHHHHHHc--------CCEEEE--EeCCCcHHHHHHHHHHHHhcCCCEEEEecCccccH-
Confidence 699999863 222234455555555543 455443 44555665555555666677888766422211111
Q ss_pred HHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEc--C-CCCcchHHHHHHHH
Q 008205 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVD--D-DHGRNGIAALGDKL 189 (574)
Q Consensus 113 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~--~-~~g~~~~~~l~~~~ 189 (574)
......++|+|...... +.+-.+...+...+..+++.|...|.++++++... + .......+.+++.+
T Consensus 73 --~~l~~~~~pvV~~~~~~--------~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~al 142 (255)
T 1byk_A 73 --EMLAHWQSSLVLLARDA--------KGFASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFC 142 (255)
T ss_dssp --TTSGGGSSSEEEESSCC--------SSCEEEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHHH
T ss_pred --HHHHhcCCCEEEEcccc--------CCCCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCCCCcccHHHHHHHHHHHH
Confidence 23445689999864321 12234556677777778888777899999999854 2 23456778899999
Q ss_pred hhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEe
Q 008205 190 AEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVT 257 (574)
Q Consensus 190 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~ 257 (574)
++.|+.+.. +....+..+-...++++-..+++.|+ +++...+..+++++++.|+ .+...+..
T Consensus 143 ~~~g~~~~~---~~~~~~~~~~~~~~~~~l~~~~~ai~-~~~d~~A~g~~~al~~~g~--~di~vig~ 204 (255)
T 1byk_A 143 KAHKLHPVA---ALPGLAMKQGYENVAKVITPETTALL-CATDTLALGASKYLQEQRI--DTLQLASV 204 (255)
T ss_dssp HHTTCCCEE---ECCCSCHHHHHHHSGGGCCTTCCEEE-ESSHHHHHHHHHHHHHTTC--CSCEEEEE
T ss_pred HHcCCCcce---eecCCccchHHHHHHHHhcCCCCEEE-EeChHHHHHHHHHHHHcCC--CcEEEEEe
Confidence 998875431 22112333333444554444555544 4566778889999999997 44444443
No 133
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=97.32 E-value=0.0051 Score=59.65 Aligned_cols=205 Identities=9% Similarity=-0.044 Sum_probs=120.0
Q ss_pred eEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc-CCChHH
Q 008205 32 VLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVI 109 (574)
Q Consensus 32 ~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~ 109 (574)
..+||+++|.. ..+-.....+++.+.++. |+++. +.++..++..-.+.+..++.+++.+||- |..+..
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~ 72 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEA--------GYKTD--LQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTT 72 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGG
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHHc--------CCEEE--EeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchh
Confidence 45899999875 222234455555555542 45544 4456677777777778888888888774 444444
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHH-------cCCeEEEEEEEcCC--CCcc
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDY-------FGWRNVIALYVDDD--HGRN 180 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~-------~~W~~v~ii~~~~~--~g~~ 180 (574)
.......+...+||+|......+.. .... ..+.......+..+++.|.. .|-++++++..... ....
T Consensus 73 ~~~~~~~~~~~giPvV~~~~~~~~~--~~~~--~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~~ 148 (330)
T 3uug_A 73 LSDVLKQAGEQGIKVIAYDRLIRNS--GDVS--YYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAFF 148 (330)
T ss_dssp GHHHHHHHHHTTCEEEEESSCCCSC--TTCC--EEEEECHHHHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHHH
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCC--Ccee--EEEEeCHHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHHH
Confidence 4444556777899999875433211 1122 23445667677777777666 68889999975432 2234
Q ss_pred hHHHHHHHHhhc---C-cEEEEEe-----ecCCCCChhhHHHHHHHhhc-----CCCeEEEEEeChHHHHHHHHHHHHCC
Q 008205 181 GIAALGDKLAEK---R-CRLSHKV-----PLSPKGSRNQIIDTLLTVSS-----MMSRILILHTYDIWGLEVLNAAKHLR 246 (574)
Q Consensus 181 ~~~~l~~~~~~~---g-~~v~~~~-----~~~~~~~~~~~~~~l~~ik~-----~~~~viil~~~~~~~~~il~~a~~~g 246 (574)
..+.+++.+++. | +.+.... ......+...-...++++-. ...+.| ++.+...+..+++++++.|
T Consensus 149 R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai-~~~nd~~A~g~~~al~~~g 227 (330)
T 3uug_A 149 FYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLRWDPATAQARMDNLLSAYYTDAKVDAV-LSPYDGLSIGIISSLKGVG 227 (330)
T ss_dssp HHHHHHHHHHHHHHHTSEECTTCCCSHHHHBCGGGCHHHHHHHHHHHHHHHCSSSCCCEE-ECSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccccCceEEeecccccccccCCCCCHHHHHHHHHHHHHhcCCCCCeEEE-EECCCchHHHHHHHHHHcC
Confidence 567777777765 3 4432110 00011122222233333322 344543 4456677888999999999
Q ss_pred CCCCC
Q 008205 247 MMESG 251 (574)
Q Consensus 247 m~~~~ 251 (574)
+..++
T Consensus 228 ~~vP~ 232 (330)
T 3uug_A 228 YGTKD 232 (330)
T ss_dssp CSSSS
T ss_pred CCCCC
Confidence 86553
No 134
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=97.28 E-value=9.4e-05 Score=69.09 Aligned_cols=76 Identities=18% Similarity=0.232 Sum_probs=60.6
Q ss_pred CceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhC---CCCcCeEEEECCCCCCCCChHHHHHHhhhccccccc
Q 008205 470 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELL---PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRK 546 (574)
Q Consensus 470 ~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l---~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~ 546 (574)
++++|++.. .++|+......+..+.||++|+++++++.+ |++ ++++.. .|+.++..|.+|++|++
T Consensus 38 ~~l~vg~~~--~~~p~~~~~~~~g~~~G~~~~l~~~~~~~~~~pg~~--v~~~~~-------~~~~~~~~l~~g~~D~~- 105 (259)
T 2v25_A 38 GQLIVGVKN--DVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKK--IKLVAV-------NAKTRGPLLDNGSVDAV- 105 (259)
T ss_dssp TCEEEEECS--EETTTEEEETTTTEEESHHHHHHHHHHHHHHSCTTS--EEEEEC-------CTTTHHHHHHTTSCSEE-
T ss_pred CeEEEEECC--CCCCeEEEECCCCeEEEeeHHHHHHHHHHhcCCCcc--eEEEEc-------CHHHHHHHHhCCCCCEE-
Confidence 568888743 355554433234579999999999999999 988 888887 79999999999999999
Q ss_pred ccccceeeeEEEEeeCc
Q 008205 547 KIFFNLVILFAILANGG 563 (574)
Q Consensus 547 ~~~~~~~~~~~~~~~~~ 563 (574)
+++++.+++|+
T Consensus 106 ------~~~~~~~~~~~ 116 (259)
T 2v25_A 106 ------IATFTITPERK 116 (259)
T ss_dssp ------CSSCBCCHHHH
T ss_pred ------EecCccCHHHH
Confidence 66677788876
No 135
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=97.27 E-value=9.3e-05 Score=70.53 Aligned_cols=81 Identities=15% Similarity=0.139 Sum_probs=64.5
Q ss_pred CceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhcccccccccc
Q 008205 470 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKIF 549 (574)
Q Consensus 470 ~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~~ 549 (574)
++++|++.. .|+|+.... .+..+.||.+|+++++++.+|++ ++++.. .|+.++..|.+|++|++
T Consensus 57 ~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~G~~--v~~~~~-------~~~~~~~~l~~G~~D~~---- 120 (283)
T 2yln_A 57 GTVTVGTEG--TYAPFTYHD-KDGKLTGYDVEVTRAVAEKLGVK--VEFKET-------QWDSMMAGLKAGRFDVV---- 120 (283)
T ss_dssp CEEEEEECS--EETTTEEEC-TTSCEESHHHHHHHHHHHHHTCE--EEEEEC-------CGGGHHHHHHHTSCSEE----
T ss_pred CeEEEEECC--CCCCeeEEC-CCCCEeeehHHHHHHHHHHcCCc--eEEEEC-------CHHHHHHHHHCCCcCEE----
Confidence 568888743 366665433 34579999999999999999998 888887 69999999999999999
Q ss_pred cceeeeEEE-EeeCc----eeeecc
Q 008205 550 FNLVILFAI-LANGG----FLVPCR 569 (574)
Q Consensus 550 ~~~~~~~~~-~~~~~----~~v~f~ 569 (574)
+..+++ +.+|+ |+.|++
T Consensus 121 ---~~~~~~~t~~r~~~~~~~~p~~ 142 (283)
T 2yln_A 121 ---ANQVGLTSPERQATFDKSEPYS 142 (283)
T ss_dssp ---CSSCCCCSHHHHHHEEECSCSE
T ss_pred ---EecCccCChhhhcceEeccCee
Confidence 767777 88887 444544
No 136
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=97.27 E-value=0.014 Score=56.73 Aligned_cols=197 Identities=12% Similarity=0.046 Sum_probs=117.3
Q ss_pred CeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHH
Q 008205 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI 109 (574)
Q Consensus 31 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 109 (574)
..-+||+++|.. ..+-.....+++.+.++. |+++.+ .++.. +..-.+....++.+++.+||-...
T Consensus 63 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~--- 128 (333)
T 3jvd_A 63 RSALVGVIVPDLSNEYYSESLQTIQQDLKAA--------GYQMLV--AEANS-VQAQDVVMESLISIQAAGIIHVPV--- 128 (333)
T ss_dssp -CCEEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEEE--EECCS-HHHHHHHHHHHHHHTCSEEEECCC---
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--------CCEEEE--ECCCC-hHHHHHHHHHHHhCCCCEEEEcch---
Confidence 456799999864 222234455555555553 455544 44444 444444555666778888775443
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCC--CcchHHHHHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDH--GRNGIAALGD 187 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~--g~~~~~~l~~ 187 (574)
...+...++|+|......+ +.. +-.+..++...+..+++.|...|-++++++...... .....+.+++
T Consensus 129 ----~~~~~~~~iPvV~~~~~~~---~~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 198 (333)
T 3jvd_A 129 ----VGSIAPEGIPMVQLTRGEL---GPG---FPRVLCDDEAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGISH 198 (333)
T ss_dssp ----TTCCC-CCSCEEEECC-------CC---SCEEEECHHHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHH
T ss_pred ----HHHHhhCCCCEEEECccCC---CCC---CCEEEEChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHH
Confidence 3345677999998754322 112 223455666677777788877899999999865432 3456788889
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC-CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEE
Q 008205 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM-MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWI 255 (574)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~-~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i 255 (574)
.+++.|+.... ... ..+..+-...++++-+. .++.| ++++...+..+++++++.|+..++-+-|
T Consensus 199 al~~~g~~~~~--~~~-~~~~~~~~~~~~~ll~~~~~~ai-~~~nd~~A~g~~~al~~~G~~vP~disv 263 (333)
T 3jvd_A 199 AASIYGAEVTF--HFG-HYSVESGEEMAQVVFNNGLPDAL-IVASPRLMAGVMRAFTRLNVRVPHDVVI 263 (333)
T ss_dssp HHHHTTCEEEE--EEC-CSSHHHHHHHHHHHHHTCCCSEE-EECCHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHCCCCEEE--ecC-CCCHHHHHHHHHHHhcCCCCcEE-EECCHHHHHHHHHHHHHcCCCCCCceEE
Confidence 99999987211 111 12333334444444333 34544 4556677888999999999876544433
No 137
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=97.23 E-value=0.065 Score=50.61 Aligned_cols=210 Identities=14% Similarity=0.016 Sum_probs=116.0
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEec--CCCCHHHHHHHHHHhHhcCcEEEEc-CCChHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHD--TNYSRFLGMVEALTLLENETVAIIG-PQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d--~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~ 109 (574)
+||++.|.. ..+-.....+++.+.++. |+++.+ .+ +..++..-.+....++.+++.+||- |.....
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~ 72 (288)
T 1gud_A 3 EYAVVLKTLSNPFWVDMKKGIEDEAKTL--------GVSVDI--FASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVN 72 (288)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCCEEE--EECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSST
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHc--------CCEEEE--eCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHH
Confidence 689998763 222223445555555443 344443 44 5556655555566777788888764 433322
Q ss_pred -HHHHHHhhccCCccEEecccCCCCcC-C-CCCCceEEecCChHHHHHHHHHHHHHc-C--CeEEEEEEEcCCC--Ccch
Q 008205 110 -AHLVSHIANEFQVPLLSFAATDPSLS-S-LQYPFFVRTTQSDLYQMAAIADIVDYF-G--WRNVIALYVDDDH--GRNG 181 (574)
Q Consensus 110 -~~~va~~~~~~~iP~Is~~~~~~~ls-~-~~~~~~~r~~ps~~~~~~ai~~ll~~~-~--W~~v~ii~~~~~~--g~~~ 181 (574)
...+ ..+...++|+|......+... . ..-+..-.+......-+...++.|... | -+++++|...... ....
T Consensus 73 ~~~~~-~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~~~~~R 151 (288)
T 1gud_A 73 LVMPV-ARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEAR 151 (288)
T ss_dssp THHHH-HHHHHTTCEEEEESSCCCHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHHH
T ss_pred HHHHH-HHHHHCCCeEEEECCCCCcccccccCCceeEEECCChHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCCchHhHH
Confidence 2233 334557999998643211100 0 000110245566666677777766555 8 8999999854332 2346
Q ss_pred HHHHHHHHhhc-CcEEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeC
Q 008205 182 IAALGDKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD 258 (574)
Q Consensus 182 ~~~l~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~ik~--~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~ 258 (574)
.+.+++.+++. |+.+.... ....+...-...++++-+ ...+. |++.+...+.-+++++++.|+. .+...++-+
T Consensus 152 ~~Gf~~al~~~~g~~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~a-i~~~nD~~A~g~~~al~~~G~~-~dv~vvGfD 227 (288)
T 1gud_A 152 RNGATEAFKKASQIKLVASQ--PADWDRIKALDVATNVLQRNPNIKA-IYCANDTMAMGVAQAVANAGKT-GKVLVVGTD 227 (288)
T ss_dssp HHHHHHHHHTCTTEEEEEEE--ECTTCHHHHHHHHHHHHHHCTTCCE-EEESSHHHHHHHHHHHHHTTCT-TTSEEEEES
T ss_pred HHHHHHHHHhCCCcEEEEee--cCCccHHHHHHHHHHHHHhCCCceE-EEECCCchHHHHHHHHHhcCCC-CCeEEEEeC
Confidence 67788888877 87654322 111233333334444322 23444 4445666788899999999984 444455443
No 138
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=97.23 E-value=0.043 Score=52.81 Aligned_cols=207 Identities=10% Similarity=0.004 Sum_probs=110.8
Q ss_pred CeEEEEEEecc---CC-ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCC
Q 008205 31 PVLNIGAVFAL---NS-TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQF 106 (574)
Q Consensus 31 ~~i~IG~l~~~---~~-~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~ 106 (574)
++.+||+++|. +. .+-.....+++.+.++. |+++.+ .++..+. ...+.+..++++++.+||....
T Consensus 3 ~~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~--------g~~~~~--~~~~~~~-~~~~~l~~l~~~~~dgIi~~~~ 71 (318)
T 2fqx_A 3 GDFVVGMVTDSGDIDDKSFNQQVWEGISRFAQEN--------NAKCKY--VTASTDA-EYVPSLSAFADENMGLVVACGS 71 (318)
T ss_dssp CCCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHT--------TCEEEE--EECCSGG-GHHHHHHHHHHTTCSEEEEEST
T ss_pred CCcEEEEEEcCCCCCCccHHHHHHHHHHHHHHHh--------CCeEEE--EeCCCHH-HHHHHHHHHHHcCCCEEEECCh
Confidence 45789999972 22 22233344554444432 455444 3333222 2334566777788888886433
Q ss_pred hHHHHHHHHhhccC-CccEEecccCCCCcCCCCCCceEEecCChHHHHHHH----HHHHHHcCC-eEEEEEEEcC-CCCc
Q 008205 107 SVIAHLVSHIANEF-QVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAI----ADIVDYFGW-RNVIALYVDD-DHGR 179 (574)
Q Consensus 107 s~~~~~va~~~~~~-~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai----~~ll~~~~W-~~v~ii~~~~-~~g~ 179 (574)
... ..+..++..+ ++|++......+ . .+.+-.+.. +..++..+ +..+...|- +++++|.... ....
T Consensus 72 ~~~-~~~~~~a~~~p~~p~v~id~~~~---~--~~~~~~v~~-d~~~~~~lag~~a~~l~~~Gh~r~Ig~i~g~~~~~~~ 144 (318)
T 2fqx_A 72 FLV-EAVIETSARFPKQKFLVIDAVVQ---D--RDNVVSAVF-GQNEGSFLVGVAAALKAKEAGKSAVGFIVGMELGMMP 144 (318)
T ss_dssp TTH-HHHHHHHHHCTTSCEEEESSCCC---S--CTTEEEEEE-CHHHHHHHHHHHHHHHHHHTTCCEEEEEESCCSTTTH
T ss_pred hHH-HHHHHHHHHCCCCEEEEEcCccC---C--CCCEEEEEe-chHHHHHHHHHHHHHHhccCCCcEEEEEeCcccHHHH
Confidence 221 2244555543 899987643211 0 122222333 33344333 355666676 8999997543 2334
Q ss_pred chHHHHHHHHhhcCcEEEEEeecCCCC-ChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEe
Q 008205 180 NGIAALGDKLAEKRCRLSHKVPLSPKG-SRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVT 257 (574)
Q Consensus 180 ~~~~~l~~~~~~~g~~v~~~~~~~~~~-~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~ 257 (574)
.+.+.+++.+++.|..+.....+.-.. +...-....+++.+.++++|+ ++....+.-++++++++|+. ++-+|++.
T Consensus 145 ~r~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~-~~~d~~a~Gv~~a~~e~g~~-P~dv~viG 221 (318)
T 2fqx_A 145 LFEAGFEAGVKAVDPDIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIF-QVAGGTGNGVIKEARDRRLN-GQDVWVIG 221 (318)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEE-EECGGGHHHHHHHHHHHHHT-TCCCEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEE-ECCCCCchHHHHHHHhhhhc-cCCcEEEE
Confidence 566778888888775433222222111 222233444555455677654 44556677788999998876 55455544
No 139
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=97.21 E-value=0.018 Score=57.83 Aligned_cols=209 Identities=10% Similarity=0.077 Sum_probs=118.7
Q ss_pred CCCCeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCCh
Q 008205 28 TIPPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFS 107 (574)
Q Consensus 28 ~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 107 (574)
.....-+||+++|.+..+-.....+++-+.++. |+.+.+...+... +....+...++.+||-....
T Consensus 21 ~~~~s~~Igvv~~~~~~f~~~l~~gi~~~a~~~--------g~~~~i~~~~~~~------~~i~~l~~~~vDGiIi~~~~ 86 (412)
T 4fe7_A 21 MFTKRHRITLLFNANKAYDRQVVEGVGEYLQAS--------QSEWDIFIEEDFR------ARIDKIKDWLGDGVIADFDD 86 (412)
T ss_dssp CCCCCEEEEEECCTTSHHHHHHHHHHHHHHHHH--------TCCEEEEECC-CC--------------CCCSEEEEETTC
T ss_pred CCCCCceEEEEeCCcchhhHHHHHHHHHHHHhc--------CCCeEEEecCCcc------chhhhHhcCCCCEEEEecCC
Confidence 345578899999865444345566666665553 3445544422211 12345556688887752222
Q ss_pred HHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCC----CcchHH
Q 008205 108 VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDH----GRNGIA 183 (574)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~----g~~~~~ 183 (574)
..+...+...++|+|......+... ..+.+-.+......-+..+++.+...|-+++++|...... .....+
T Consensus 87 ---~~~~~~l~~~~iPvV~i~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~~R~~ 161 (412)
T 4fe7_A 87 ---KQIEQALADVDVPIVGVGGSYHLAE--SYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREY 161 (412)
T ss_dssp ---HHHHHHHTTCCSCEEEEEECCSSGG--GSCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSCCHHHHHHHH
T ss_pred ---hHHHHHHhhCCCCEEEecCCccccc--cCCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEecccccccccHHHHHHH
Confidence 2334556778999998754332110 1123345666777777788888888899999999865433 345678
Q ss_pred HHHHHHhhcCcEEEEEeecCC-CCChhhHHHHHHH-hhc-CCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 184 ALGDKLAEKRCRLSHKVPLSP-KGSRNQIIDTLLT-VSS-MMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 184 ~l~~~~~~~g~~v~~~~~~~~-~~~~~~~~~~l~~-ik~-~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
.+++.+++.|+.......... ..+.......+.+ ++. ...+. |++++...+..+++++++.|+..++-+-|+
T Consensus 162 Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a-I~~~nD~~A~g~~~al~~~G~~vP~disvi 236 (412)
T 4fe7_A 162 AFRQLVAEEKYRGVVYQGLETAPENWQHAQNRLADWLQTLPPQTG-IIAVTDARARHILQVCEHLHIPVPEKLCVI 236 (412)
T ss_dssp HHHHHHTTSSSCCEEECCSCSSCSSHHHHHHHHHHHHHHSCTTEE-EEESSHHHHHHHHHHHHHHTCCTTTTSEEE
T ss_pred HHHHHHHHcCCCccccccccccccchhhHHHHHHHHHHhCCCCeE-EEEEecHHHHHHHHHHHHcCCCCCceEEEE
Confidence 888999988875432211111 1122222333333 332 34554 445567778889999999998665444443
No 140
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=97.17 E-value=0.069 Score=50.75 Aligned_cols=195 Identities=10% Similarity=0.018 Sum_probs=106.0
Q ss_pred CeEEEEEEecc--CC-ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCCh
Q 008205 31 PVLNIGAVFAL--NS-TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFS 107 (574)
Q Consensus 31 ~~i~IG~l~~~--~~-~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 107 (574)
++.+||+++|. +. .+-.....+++.+.++. |+++ .+.++..+.....+.+..++++++.+||.....
T Consensus 4 ~~~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~--------g~~~--~~~~~~~~~~~~~~~l~~l~~~~vdgIi~~~~~ 73 (296)
T 2hqb_A 4 GGGMVGLLVEDTIDDQGWNRKAYEGLLNIHSNL--------DVDV--VLEEGVNSEQKAHRRIKELVDGGVNLIFGHGHA 73 (296)
T ss_dssp --CEEEEECCCC----CCTHHHHHHHHHHHHHS--------CCEE--EEECCCCSHHHHHHHHHHHHHTTCCEEEECSTH
T ss_pred CCcEEEEEECCCCCCCcHHHHHHHHHHHHHHHh--------CCeE--EEEeCCCCHHHHHHHHHHHHHCCCCEEEEcCHh
Confidence 35689999973 22 33344555665555542 4544 344444444444455667778899999985543
Q ss_pred HHHHHHHHhhccC-CccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHc-CCeEEEEEEEcCCCCcchHHHH
Q 008205 108 VIAHLVSHIANEF-QVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF-GWRNVIALYVDDDHGRNGIAAL 185 (574)
Q Consensus 108 ~~~~~va~~~~~~-~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~-~W~~v~ii~~~~~~g~~~~~~l 185 (574)
. ...+..++..+ ++|++...... .. +.+-.+......-+.....++.++ +-+++++|..... .. +.+.+
T Consensus 74 ~-~~~~~~~~~~~p~~p~v~id~~~---~~---~~~~~v~~d~~~g~~lag~la~~l~~~~~Ig~i~g~~~-~~-r~~Gf 144 (296)
T 2hqb_A 74 F-AEYFSTIHNQYPDVHFVSFNGEV---KG---ENITSLHFEGYAMGYFGGMVAASMSETHKVGVIAAFPW-QP-EVEGF 144 (296)
T ss_dssp H-HHHHHTTTTSCTTSEEEEESCCC---CS---SSEEEEEECCHHHHHHHHHHHHHTCSSSEEEEEESCTT-CH-HHHHH
T ss_pred H-HHHHHHHHHHCCCCEEEEEecCc---CC---CCEEEEEechHHHHHHHHHHHHhhccCCeEEEEcCcCc-hh-hHHHH
Confidence 3 23345555544 88988764321 11 222223333332222233334442 5689999985432 22 77888
Q ss_pred HHHHhhcCcEEEEEeecCCCC-ChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCC
Q 008205 186 GDKLAEKRCRLSHKVPLSPKG-SRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLR 246 (574)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~-~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~g 246 (574)
++.+++.|.. .....+.... +...-....+++.+.++++|+ ++....+.-+++++++.|
T Consensus 145 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~-~~~D~~a~Gv~~a~~e~G 204 (296)
T 2hqb_A 145 VDGAKYMNES-EAFVRYVGEWTDADKALELFQELQKEQVDVFY-PAGDGYHVPVVEAIKDQG 204 (296)
T ss_dssp HHHHHHTTCC-EEEEEECSSSSCHHHHHHHHHHHHTTTCCEEE-CCCTTTHHHHHHHHHHHT
T ss_pred HHHHHHhCCC-eEEEEeeccccCHHHHHHHHHHHHHCCCcEEE-ECCCCCCHHHHHHHHHcC
Confidence 8899888764 3222222111 222333445555555677554 445556677888999887
No 141
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=97.11 E-value=0.00016 Score=69.13 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=60.9
Q ss_pred CceEEeccCccccccceeccCCCcccceeeHHHHHHHHHhC---CCCcCeEEEECCCCCCCCChHHHHHHhhhccccccc
Q 008205 470 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELL---PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRK 546 (574)
Q Consensus 470 ~~~~v~~~~~~~~~~~~~~~~g~~~~~G~~idl~~~~~~~l---~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~ 546 (574)
++++|++.. .|+|+.... .+..+.||.+|+++++++.+ |++ ++++.. .|+.++..|.+|++|++
T Consensus 55 ~~l~vg~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~~~~g~~--v~~~~~-------~~~~~~~~l~~G~~D~~- 121 (291)
T 2yjp_A 55 GVIRIGVFG--DKPPFGYVD-ANGKNQGFDVEIAKDLAKDLLGSPDK--VEFVLT-------EAANRVEYVRSGKVDLI- 121 (291)
T ss_dssp TCEEEEECS--EETTTEEEC-TTSCEESHHHHHHHHHHHHHHSCGGG--EEEEEC-------CGGGHHHHHHTTSCSEE-
T ss_pred CeEEEEEcC--CCCCceEEC-CCCCEeehHHHHHHHHHHHhccCCce--EEEEEc-------cHHHHHHHHhCCCeeEE-
Confidence 458888743 355654332 34579999999999999999 998 888887 69999999999999999
Q ss_pred ccccceeeeEEEEeeCc
Q 008205 547 KIFFNLVILFAILANGG 563 (574)
Q Consensus 547 ~~~~~~~~~~~~~~~~~ 563 (574)
+++++++.+|+
T Consensus 122 ------~~~~~~~~~r~ 132 (291)
T 2yjp_A 122 ------LANFTQTPERA 132 (291)
T ss_dssp ------CSSCBCCHHHH
T ss_pred ------EeCCCCChHHH
Confidence 66677888887
No 142
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=97.05 E-value=0.046 Score=53.39 Aligned_cols=204 Identities=13% Similarity=0.029 Sum_probs=111.0
Q ss_pred CeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCC-HHHHHHHHHHhHhcCcEEEE--cCCC
Q 008205 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYS-RFLGMVEALTLLENETVAII--GPQF 106 (574)
Q Consensus 31 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~-~~~a~~~~~~l~~~~v~aii--Gp~~ 106 (574)
...+||+++|.- ..+-.....+++.+.++ .|+++.+ .+...+ +..-.+....++.+++.+|| +|..
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~l~~l~~~~vdGiIi~~~~~ 129 (349)
T 1jye_A 60 QSLLIGVATSSLALHAPSQIVAAILSRADQ--------LGASVVV--SMVERSGVEACKTAVHNLLAQRVSGLIINYPLD 129 (349)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECCSSSHHHHHHHHHHHHTTTCSCEEEESCCC
T ss_pred CCCEEEEEeCCCCcccHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCcHHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 456899999863 22212334444444433 2466554 333332 33333445566677777665 3443
Q ss_pred hHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCC--CcchHHH
Q 008205 107 SVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDH--GRNGIAA 184 (574)
Q Consensus 107 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~--g~~~~~~ 184 (574)
... .+...+...++|+|...... ....+ .+......-+...++.|...|.+++++|...... .....+.
T Consensus 130 ~~~--~~~~~~~~~~iPvV~i~~~~----~~~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~G 200 (349)
T 1jye_A 130 DQD--AIAVEAACTNVPALFLDVSD----QTPIN---SIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAG 200 (349)
T ss_dssp HHH--HHHHHHHTTTSCEEESSSCT----TSSSC---EEEECHHHHHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHH
T ss_pred Chh--HHHHHHhhCCCCEEEEcccC----CCCCC---EEEEchHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHH
Confidence 322 22233445789999864321 11222 2344555556666677666799999999855332 3456678
Q ss_pred HHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEE
Q 008205 185 LGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (574)
Q Consensus 185 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~ 256 (574)
+++.+++.|+.+..... . ..+..+-...++++-.. .++.|+ +++...+.-+++++++.|+..++-+-|+
T Consensus 201 f~~al~~~gi~~~~~~~-~-~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disvv 271 (349)
T 1jye_A 201 WHKYLTRNQIQPIAERE-G-DWSAMSGFQQTMQMLNEGIVPTAML-VANDQMALGAMRAITESGLRVGADISVV 271 (349)
T ss_dssp HHHHHHHTTCCCSEEEE-C-CSSHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCBTTTBEEE
T ss_pred HHHHHHHcCCCcccccc-C-CCChHHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 88889888875322211 1 12222222333333222 345444 4456678889999999998765544444
No 143
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=97.04 E-value=0.0012 Score=63.42 Aligned_cols=208 Identities=10% Similarity=0.003 Sum_probs=120.9
Q ss_pred CCeEEEEEEeccCC-ccch-hHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCCh
Q 008205 30 PPVLNIGAVFALNS-TIGK-VAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFS 107 (574)
Q Consensus 30 ~~~i~IG~l~~~~~-~~g~-~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 107 (574)
...-+||+++|... ..-. ....+++.+.++. |+++. +.++..++..-.+....++.+++.+||-....
T Consensus 11 ~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~ 80 (301)
T 3miz_A 11 SRSNTFGIITDYVSTTPYSVDIVRGIQDWANAN--------GKTIL--IANTGGSSEREVEIWKMFQSHRIDGVLYVTMY 80 (301)
T ss_dssp -CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEEEEEE
T ss_pred CCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEEecCC
Confidence 34568999998752 2223 5667776666652 45554 45555666665566666777788777642222
Q ss_pred HHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCC--CcchHHHH
Q 008205 108 VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDH--GRNGIAAL 185 (574)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~--g~~~~~~l 185 (574)
... ....+...++|+|......+. . +.+-.+.......+..+++.|...|.++++++...... .....+.+
T Consensus 81 ~~~--~~~~~~~~~iPvV~~~~~~~~---~--~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 153 (301)
T 3miz_A 81 RRI--VDPESGDVSIPTVMINCRPQT---R--ELLPSIEPDDYQGARDLTRYLLERGHRRIGYIRLNPILLGAELRLDAF 153 (301)
T ss_dssp EEE--CCCCCTTCCCCEEEEEEECSS---T--TSSCEEEECHHHHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHHH
T ss_pred ccH--HHHHHHhCCCCEEEECCCCCC---C--CCCCEEeeChHHHHHHHHHHHHHcCCCeEEEEecCccchhHHHHHHHH
Confidence 111 234456679999987543221 1 01233555677777788888888899999999865432 33567788
Q ss_pred HHHHhhcCcEEEE--Eeec---CCCCChhhHHHHHHHhhcC--CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEE
Q 008205 186 GDKLAEKRCRLSH--KVPL---SPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWI 255 (574)
Q Consensus 186 ~~~~~~~g~~v~~--~~~~---~~~~~~~~~~~~l~~ik~~--~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i 255 (574)
++.+++.|+.+.. ...- ............++++-+. ..+.| ++++...+..+++++++.|+..++-+-|
T Consensus 154 ~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~A~g~~~al~~~g~~vP~di~v 229 (301)
T 3miz_A 154 RRTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATEMLKQDDRPTAI-MSGNDEMAIQIYIAAMALGLRIPQDVSI 229 (301)
T ss_dssp HHHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHHHHTSTTCCSEE-EESSHHHHHHHHHHHHTTTCCHHHHCEE
T ss_pred HHHHHHcCCCCCcceEEEcCCCCcCccccHHHHHHHHHHcCCCCCcEE-EECCHHHHHHHHHHHHHcCCCCCCCeeE
Confidence 8888888864311 1111 1111111011233333222 44544 4456667888999999999864433333
No 144
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=97.03 E-value=0.059 Score=52.58 Aligned_cols=202 Identities=11% Similarity=0.010 Sum_probs=111.6
Q ss_pred CCCCCeEEEEEEeccC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEc
Q 008205 27 STIPPVLNIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG 103 (574)
Q Consensus 27 ~~~~~~i~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG 103 (574)
+..+++++||++++-. ..+......+++.+.++.+ -++++.+.++..+.....+.+.+++++++.+||+
T Consensus 21 ~~~~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G--------~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~ 92 (356)
T 3s99_A 21 SMAEEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALG--------DKVETTFLENVAEGADAERSIKRIARAGNKLIFT 92 (356)
T ss_dssp -----CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHT--------TTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEE
T ss_pred cccCCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhC--------CceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 4456789999999642 2233345566666555542 1256666666555445566778888899999998
Q ss_pred CCChHHHHHHHHhhccC-CccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH-HH-cCCeEEEEEEEcCCC-Cc
Q 008205 104 PQFSVIAHLVSHIANEF-QVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV-DY-FGWRNVIALYVDDDH-GR 179 (574)
Q Consensus 104 p~~s~~~~~va~~~~~~-~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll-~~-~~W~~v~ii~~~~~~-g~ 179 (574)
.... ...++..++..+ ++|++-..... .. +.+..... +..++..++-.+ .+ -+=++|++|...... -.
T Consensus 93 ~g~~-~~~~~~~vA~~~Pdv~fv~id~~~---~~---~Nv~sv~~-~~~eg~ylaG~~A~~~tk~~kIGfVgg~~~p~v~ 164 (356)
T 3s99_A 93 TSFG-YMDPTVKVAKKFPDVKFEHATGYK---TA---DNMSAYNA-RFYEGRYVQGVIAAKMSKKGIAGYIGSVPVPEVV 164 (356)
T ss_dssp CSGG-GHHHHHHHHTTCTTSEEEEESCCC---CB---TTEEEEEE-CHHHHHHHHHHHHHHHCSSCEEEEEECCCCHHHH
T ss_pred CCHH-HHHHHHHHHHHCCCCEEEEEeccc---cC---CcEEEEEe-chhHHHHHHHHHHHHhcCCCEEEEECCCccHHHH
Confidence 7543 344567777665 78888653221 11 22222222 223344444332 11 124799999854321 22
Q ss_pred chHHHHHHHHhhcCcEEEEEeecCCC-CChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCC
Q 008205 180 NGIAALGDKLAEKRCRLSHKVPLSPK-GSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRM 247 (574)
Q Consensus 180 ~~~~~l~~~~~~~g~~v~~~~~~~~~-~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm 247 (574)
.+...+.+.++..+..+.....+.-. .+...-....+.+.+.++++|+...+.. -++++|++.|.
T Consensus 165 ~~~~GF~~G~k~~np~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---Gv~~aa~e~Gv 230 (356)
T 3s99_A 165 QGINSFMLGAQSVNPDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDST---AAIQVAHDRGI 230 (356)
T ss_dssp HHHHHHHHHHHTTCTTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESSSSS---HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECCCch---HHHHHHHHcCC
Confidence 34566777777665443322222211 2333344556666667899777765543 57899998774
No 145
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=96.51 E-value=0.078 Score=52.08 Aligned_cols=211 Identities=12% Similarity=0.037 Sum_probs=113.4
Q ss_pred CCeEEEEEEeccCCc--cchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCCh
Q 008205 30 PPVLNIGAVFALNST--IGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFS 107 (574)
Q Consensus 30 ~~~i~IG~l~~~~~~--~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 107 (574)
...-+||+++|.... ........+..++++.=+ |+.+.+...+...+. .-.+....+..+++.+||-....
T Consensus 66 ~~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~------g~~~~~~~~~~~~~~-~~~~~~~~l~~~~vdGiIi~~~~ 138 (366)
T 3h5t_A 66 RRAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG------DTQLTLIPASPASSV-DHVSAQQLVNNAAVDGVVIYSVA 138 (366)
T ss_dssp --CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS------SCEEEEEECCCCTTC-CHHHHHHHHHTCCCSCEEEESCC
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHh------hCCEEEEEcCCCccH-HHHHHHHHHHhCCCCEEEEecCC
Confidence 345679999987421 112233334444444311 566666655433221 12233445556666665532212
Q ss_pred HHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEc-------------
Q 008205 108 VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVD------------- 174 (574)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~------------- 174 (574)
..... ...+...++|+|...... .....+ .+..+...-+..+++.|...|-+++++|...
T Consensus 139 ~~~~~-~~~l~~~~iPvV~i~~~~---~~~~~~---~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~ 211 (366)
T 3h5t_A 139 KGDPH-IDAIRARGLPAVIADQPA---REEGMP---FIAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRE 211 (366)
T ss_dssp TTCHH-HHHHHHHTCCEEEESSCC---SCTTCC---EEEECHHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHH
T ss_pred CChHH-HHHHHHCCCCEEEECCcc---CCCCCC---EEEeChHHHHHHHHHHHHHCCCCcEEEEecccccccccCccccc
Confidence 11122 334456699999864322 112222 3455677677778888888899999999832
Q ss_pred ------CCCCcchHHHHHHHHhhcCcEEEEEeec-CCCCChhhHHHHHHHhhc--CCCeEEEEEeChHHHHHHHHHHHHC
Q 008205 175 ------DDHGRNGIAALGDKLAEKRCRLSHKVPL-SPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHL 245 (574)
Q Consensus 175 ------~~~g~~~~~~l~~~~~~~g~~v~~~~~~-~~~~~~~~~~~~l~~ik~--~~~~viil~~~~~~~~~il~~a~~~ 245 (574)
........+.+++.+++.|+.+.....+ ....+..+-...++++-+ ..++.|+ +++...+..+++++++.
T Consensus 212 ~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~ 290 (366)
T 3h5t_A 212 RLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECWINNRQHNFEVAKELLETHPDLTAVL-CTVDALAFGVLEYLKSV 290 (366)
T ss_dssp HHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEESSCCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHT
T ss_pred cccccccchHHHHHHHHHHHHHHCCCCCCcceEEEcCCCCHHHHHHHHHHHHcCCCCCcEEE-ECCcHHHHHHHHHHHHc
Confidence 2223456788889999888653110000 001223333334444322 2455443 45667788899999999
Q ss_pred CCCCCCeEEE
Q 008205 246 RMMESGYVWI 255 (574)
Q Consensus 246 gm~~~~~~~i 255 (574)
|+..++-+-|
T Consensus 291 G~~vP~disv 300 (366)
T 3h5t_A 291 GKSAPADLSL 300 (366)
T ss_dssp TCCTTTTCEE
T ss_pred CCCCCCceEE
Confidence 9875543333
No 146
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=96.21 E-value=0.32 Score=47.08 Aligned_cols=251 Identities=13% Similarity=0.072 Sum_probs=139.2
Q ss_pred CCeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCC-----CCcEEEEEEecCCCCHH-----HHHHHHHHhHhc-Cc
Q 008205 30 PPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAIL-----GGTKLKLTVHDTNYSRF-----LGMVEALTLLEN-ET 98 (574)
Q Consensus 30 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l-----~g~~l~~~~~d~~~~~~-----~a~~~~~~l~~~-~v 98 (574)
..+.+||++.+.-+ ......++++..+++.|..++.. ....+++++..+-.|++ .++..+.++... ++
T Consensus 10 ~~~~~igi~t~t~s-~se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~se~~ttI~~I~~~a~~~gy 88 (371)
T 3qi7_A 10 IDDFKVAVVTQPLS-ENKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFTSNIDSAINKIVKLADDKEV 88 (371)
T ss_dssp CCCEEEEEEECCTT-TCHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGGGGHHHHHHHHHGGGGCTTE
T ss_pred CCCeEEEEEcCCcC-CCHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCchHHHHHHHHHHHHHhhcCCC
Confidence 45699999886543 33677888899999998755321 01223455555444442 235555555555 77
Q ss_pred EEEEcCCChHHHHHHHHhhccCCccEEecccCCCC---cCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcC
Q 008205 99 VAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPS---LSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD 175 (574)
Q Consensus 99 ~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~---ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~ 175 (574)
.+||.-............+.+.+++.|-..+.... ..+ .+.. +.+...+..-+...++.|...|-+++++|....
T Consensus 89 k~II~n~~~~~~~~~i~~lkekrvDgIIi~~~~~ed~~~i~-~~~d-i~V~~Dn~~Ggy~A~~~Li~~Ghk~Ia~Isgp~ 166 (371)
T 3qi7_A 89 QAIVVSTDQAGLLPALQKVKEKRPEIITISAPMGDDKNQLS-QFVD-VNLGVSAEERGKVLAERSKEMGAKAFIHYASTD 166 (371)
T ss_dssp EEEEEECSSCCCHHHHHHHHHHCTTSEEEESSCCSCHHHHH-HHSS-EEEECCHHHHHHHHHHHHHHTTCSCEEEEEETT
T ss_pred eEEEEECCCcchHHHHHHHHhcCCCEEEEeccccccchhhc-ccCc-eEEEeChHHHHHHHHHHHHHCCCCEEEEEeccc
Confidence 77776433221122345566666665543332111 100 0011 245556666666677888999999999998644
Q ss_pred C--C--CcchHHHHHHHHhhcCcEEEEEeecCCCCChhh---HHHHHHH-----hhcCCCeEEEEEeChHHHHHHHHHHH
Q 008205 176 D--H--GRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQ---IIDTLLT-----VSSMMSRILILHTYDIWGLEVLNAAK 243 (574)
Q Consensus 176 ~--~--g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~---~~~~l~~-----ik~~~~~viil~~~~~~~~~il~~a~ 243 (574)
. + ...+.+-+++.+++.|+.+.......+ ..... ...+|.+ ++..+...-|++++...+.-+++++.
T Consensus 167 ~~~~~~~~~R~~Gyk~Al~e~Gi~~~~~~~~d~-t~e~G~~~a~~lL~~~~~~~~~~~~~~TAIFatND~mAiG~ikal~ 245 (371)
T 3qi7_A 167 DLKDVNIAKRLEMIKETCKNIGLPFVQVNTPNI-NTEEDKNKVKQFLNEDIEKQVKKYGKDINVFGVNEYMDEVILTKAL 245 (371)
T ss_dssp GGGSHHHHHHHHHHHHHHHHTTCCEEEEEECCC-SSTHHHHHHHHHHHHHHHHHHHHHCSCCEEEESSHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHcCCCceeecCCCC-chHHHHHHHHHHHhccccchhhccCCCcEEEECCHHHHHHHHHHHH
Confidence 2 2 223677899999999997654432221 11122 2222321 11222323556677888999999999
Q ss_pred HCCCCCCCeEEEEeCccccccCCCCcCChhhhhhccceEEEEEecCCChHHHHHHHHH
Q 008205 244 HLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRW 301 (574)
Q Consensus 244 ~~gm~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~ 301 (574)
++|+..+ +. +. +....+..|++|+.+.......+...++..
T Consensus 246 e~Gi~VP-------ed-----~~-----psp~~~yp~alg~~~~~~~~~d~~~i~~~i 286 (371)
T 3qi7_A 246 ELKYIVA-------EQ-----SN-----PSPIQTYPSVMGLKISEKDAQNYDKINDMI 286 (371)
T ss_dssp HHCCBBC-------CC-----SS-----CCTTTTHHHHHTCCCCGGGTTCHHHHHHHH
T ss_pred HcCCccC-------CC-----CC-----CCccccCcchhccccChhhccCHHHHHHHH
Confidence 9996543 11 11 112345667777766543333344444443
No 147
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=95.73 E-value=0.19 Score=45.89 Aligned_cols=125 Identities=14% Similarity=0.060 Sum_probs=81.9
Q ss_pred HHHHHhHhcCcEEEEcCCChHHH--------HHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHH
Q 008205 88 VEALTLLENETVAIIGPQFSVIA--------HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADI 159 (574)
Q Consensus 88 ~~~~~l~~~~v~aiiGp~~s~~~--------~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~l 159 (574)
+.+.++...|+.+|+-+-.+.+. .....+....++|+++. +.++++.
T Consensus 57 ~aa~~L~~ag~d~i~~aCtsas~~~G~~~~~~~~~~l~~~~~iPv~~~-------------------------~~A~~~a 111 (240)
T 3ixl_A 57 DHARRLQKQGAAVVSLMCTSLSFYRGAAFNAALTVAMREATGLPCTTM-------------------------STAVLNG 111 (240)
T ss_dssp HHHHHHHHTTEEEEEECCHHHHHTTCHHHHHHHHHHHHHHHSSCEEEH-------------------------HHHHHHH
T ss_pred HHHHHhccCCCCEEEECCcHHHHhcccchHHHHHHHHHhccCCCEECH-------------------------HHHHHHH
Confidence 33445555688888764333332 23455555668888863 3677888
Q ss_pred HHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCC-------CChhhHHHHHHH-h-hcCCCeEEEEEe
Q 008205 160 VDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPK-------GSRNQIIDTLLT-V-SSMMSRILILHT 230 (574)
Q Consensus 160 l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~-------~~~~~~~~~l~~-i-k~~~~~viil~~ 230 (574)
++..|-++|+++.. |.......+++.+++.|+.+......... .+...+.+.+++ + +..+++.||+.|
T Consensus 112 l~~~g~~rvglltp---y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adaivL~C 188 (240)
T 3ixl_A 112 LRALGVRRVALATA---YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGILLSS 188 (240)
T ss_dssp HHHTTCSEEEEEES---SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEEEEEC
T ss_pred HHHhCCCEEEEEeC---ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEEEEeC
Confidence 88889999999974 55666678889999999987665433211 234456667777 6 667788888887
Q ss_pred ChHHHHHHHH
Q 008205 231 YDIWGLEVLN 240 (574)
Q Consensus 231 ~~~~~~~il~ 240 (574)
..-....++.
T Consensus 189 T~l~~l~~i~ 198 (240)
T 3ixl_A 189 GGLLTLDAIP 198 (240)
T ss_dssp TTSCCTTHHH
T ss_pred CCCchhhhHH
Confidence 6544333333
No 148
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=94.87 E-value=0.0046 Score=55.80 Aligned_cols=61 Identities=7% Similarity=-0.092 Sum_probs=51.6
Q ss_pred CcccceeeHHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhcccccccccccceeeeEEEEee------Ccee
Q 008205 492 TDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKRKKIFFNLVILFAILAN------GGFL 565 (574)
Q Consensus 492 ~~~~~G~~idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~~~~~~~~~~~~~~~~~------~~~~ 565 (574)
..+|||..--|.++.. |++ +++.... .|++.|..|.+|++|+| ++++++++| |+.+
T Consensus 27 s~~yeGlatgl~~~f~---gi~--~~i~~mr------g~~~RI~aL~~gk~D~a-------I~S~~aa~e~~~~~~r~~~ 88 (231)
T 2ozz_A 27 TRLYEGLASGLKAQFD---GIP--FYYAHMR------GADIRVECLLNGVYDMA-------VVSRLAAESYLSQNNLCIA 88 (231)
T ss_dssp SHHHHHHHHHHHHTTT---TSC--EEEEECS------CHHHHHHHHHTTSCSEE-------EEEHHHHHHHHHHSCEEEE
T ss_pred hhhhhHHHHHHHHHhc---CCc--EEEEEcc------ChHHHHHHHHcCCCCEE-------EEecccchhhhcccCeEEE
Confidence 3489999888877663 666 7887775 79999999999999999 999999999 9988
Q ss_pred eeccc
Q 008205 566 VPCRS 570 (574)
Q Consensus 566 v~f~~ 570 (574)
++|-.
T Consensus 89 vdFg~ 93 (231)
T 2ozz_A 89 LELGP 93 (231)
T ss_dssp EECCT
T ss_pred EEcCC
Confidence 88853
No 149
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=92.25 E-value=2.9 Score=38.77 Aligned_cols=78 Identities=10% Similarity=0.015 Sum_probs=50.8
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCC-------CChhhHHHHHHHhhcCCCeEE
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPK-------GSRNQIIDTLLTVSSMMSRIL 226 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~-------~~~~~~~~~l~~ik~~~~~vi 226 (574)
.++++.++..|-++|+++. .|.......+++.+++.|+.+......... .+...+.+.++++...+++.|
T Consensus 135 ~A~~~al~~~g~~rvgvlt---p~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gadaI 211 (273)
T 2xed_A 135 GALVEGLRALDAQRVALVT---PYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDAL 211 (273)
T ss_dssp HHHHHHHHHTTCCEEEEEE---CSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSEE
T ss_pred HHHHHHHHHcCCCeEEEEc---CChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCEE
Confidence 4555556667889999996 344444568888888899887654433221 123446666667766678888
Q ss_pred EEE-eChHH
Q 008205 227 ILH-TYDIW 234 (574)
Q Consensus 227 il~-~~~~~ 234 (574)
|+. |..-.
T Consensus 212 vLg~CT~l~ 220 (273)
T 2xed_A 212 VISCAVQMP 220 (273)
T ss_dssp EEESSSSSC
T ss_pred EEcCCCCcc
Confidence 888 76443
No 150
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=89.25 E-value=5.3 Score=30.06 Aligned_cols=96 Identities=13% Similarity=0.190 Sum_probs=63.6
Q ss_pred EEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc--
Q 008205 143 VRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-- 220 (574)
Q Consensus 143 ~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~-- 220 (574)
|-+..++..+..-++.-+++.| -++.++|+|.+. .....-.+.+++.|+.+.. + .+..+++.-+++|-.
T Consensus 5 fvvfssdpeilkeivreikrqg-vrvvllysdqde--krrrerleefekqgvdvrt---v---edkedfrenireiwery 75 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQG-VRVVLLYSDQDE--KRRRERLEEFEKQGVDVRT---V---EDKEDFRENIREIWERY 75 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTT-CEEEEEECCSCH--HHHHHHHHHHHTTTCEEEE---C---CSHHHHHHHHHHHHHHC
T ss_pred EEEecCCHHHHHHHHHHHHhCC-eEEEEEecCchH--HHHHHHHHHHHHcCCceee---e---ccHHHHHHHHHHHHHhC
Confidence 3444556667777888788887 567788877652 2333444567788987643 2 366788888877754
Q ss_pred CCCeEEEEE--eChHHHHHHHHHHHHCCC
Q 008205 221 MMSRILILH--TYDIWGLEVLNAAKHLRM 247 (574)
Q Consensus 221 ~~~~viil~--~~~~~~~~il~~a~~~gm 247 (574)
-+-+++++. -+.+-...++..|++.|.
T Consensus 76 pqldvvvivttddkewikdfieeakergv 104 (162)
T 2l82_A 76 PQLDVVVIVTTDDKEWIKDFIEEAKERGV 104 (162)
T ss_dssp TTCCEEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEEecCcHHHHHHHHHHHHhcCc
Confidence 244555544 345668899999999885
No 151
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=88.74 E-value=9.3 Score=36.15 Aligned_cols=126 Identities=12% Similarity=0.046 Sum_probs=76.1
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHLV 113 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 113 (574)
+||.+.............+++.++++.|- ..++...+...-.++..+.+.+.+++++++.+|+........ .+
T Consensus 131 ~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~~d~~a~-Gv 203 (318)
T 2fqx_A 131 AVGFIVGMELGMMPLFEAGFEAGVKAVDP------DIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIFQVAGGTGN-GV 203 (318)
T ss_dssp EEEEEESCCSTTTHHHHHHHHHHHHHHCT------TCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEEEECGGGHH-HH
T ss_pred EEEEEeCcccHHHHHHHHHHHHHHHHHCC------CCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEEECCCCCch-HH
Confidence 68888654433334568899999998762 345444433222367778888889999899999975554333 33
Q ss_pred HHhhcc-----CCccEEecccCCCCcC---CCCCCceEEecCChHHHHHHHHHHHHHcCCe
Q 008205 114 SHIANE-----FQVPLLSFAATDPSLS---SLQYPFFVRTTQSDLYQMAAIADIVDYFGWR 166 (574)
Q Consensus 114 a~~~~~-----~~iP~Is~~~~~~~ls---~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~ 166 (574)
...+.+ .++-+|.+........ +...|.+..+..+........++.+..=.|+
T Consensus 204 ~~a~~e~g~~P~dv~viG~D~~~~~~~~~~~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~ 264 (318)
T 2fqx_A 204 IKEARDRRLNGQDVWVIGVDRDQYMDGVYDGSKSVVLTSMVKRADVAAERISKMAYDGSFP 264 (318)
T ss_dssp HHHHHHHHHTTCCCEEEEEESCCGGGGBCSSSCBSEEEEEEECHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHhhhhccCCcEEEEEecchhhhccccCCCCeEEEEEEEEHHHHHHHHHHHHHcCCCC
Confidence 344444 6788888754322111 0023556666666666666666666555564
No 152
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=85.37 E-value=3 Score=41.02 Aligned_cols=100 Identities=9% Similarity=0.016 Sum_probs=67.2
Q ss_pred CceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCc--chHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHH
Q 008205 140 PFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGR--NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLT 217 (574)
Q Consensus 140 ~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~--~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ 217 (574)
|+-+...+... ..+.++++.++.+++.+|++...... ...+.+.+.+++.|+.+.....+..+.+.+.+.+.++.
T Consensus 11 p~~i~~G~g~~---~~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~ 87 (387)
T 3bfj_A 11 PNVNFFGPNAI---SVVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAV 87 (387)
T ss_dssp CSEEEESTTGG---GGHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHH
T ss_pred CCeEEECCCHH---HHHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHH
Confidence 44444444322 34667778889999999986654444 36899999999999876543334445567788888889
Q ss_pred hhcCCCeEEEEEeC--hHHHHHHHHHH
Q 008205 218 VSSMMSRILILHTY--DIWGLEVLNAA 242 (574)
Q Consensus 218 ik~~~~~viil~~~--~~~~~~il~~a 242 (574)
+++.+.+.||-.+. .-++..++...
T Consensus 88 ~~~~~~d~IIavGGGsv~D~aK~iA~~ 114 (387)
T 3bfj_A 88 FRREQCDIIVTVGGGSPHDCGKGIGIA 114 (387)
T ss_dssp HHHTTCCEEEEEESHHHHHHHHHHHHH
T ss_pred HHhcCCCEEEEeCCcchhhHHHHHHHH
Confidence 99899998887654 34455554443
No 153
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=85.19 E-value=9.9 Score=36.71 Aligned_cols=88 Identities=11% Similarity=0.014 Sum_probs=64.1
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHLV 113 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 113 (574)
+||.+.......-.....+|..+++..| |..++.+.+..+-.|+..+.+.+.+++++|+.+|+...... .+
T Consensus 151 kIGfVgg~~~p~v~~~~~GF~~G~k~~n------p~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---Gv 221 (356)
T 3s99_A 151 IAGYIGSVPVPEVVQGINSFMLGAQSVN------PDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDST---AA 221 (356)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHHHTTC------TTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESSSSS---HH
T ss_pred EEEEECCCccHHHHHHHHHHHHHHHHHC------CCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECCCch---HH
Confidence 6888876653222345789999998876 45677766655446899999999999999999998765553 34
Q ss_pred HHhhccCCccEEecccC
Q 008205 114 SHIANEFQVPLLSFAAT 130 (574)
Q Consensus 114 a~~~~~~~iP~Is~~~~ 130 (574)
...+.+.++..|.+...
T Consensus 222 ~~aa~e~Gv~vIG~D~d 238 (356)
T 3s99_A 222 IQVAHDRGIKAFGQASD 238 (356)
T ss_dssp HHHHHHTTCEEEEEESC
T ss_pred HHHHHHcCCEEEEEcCc
Confidence 56677789988887544
No 154
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=84.66 E-value=2.2 Score=41.82 Aligned_cols=90 Identities=9% Similarity=0.014 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh-
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD- 232 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~- 232 (574)
..+.++++.+|.+++.+|++..-......+.+.+.+++.|+.+.....+.++.+.+.+.+.++.+++.+.+.||-.+..
T Consensus 20 ~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 99 (383)
T 3ox4_A 20 EKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGGGS 99 (383)
T ss_dssp HHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEESHH
T ss_pred HHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCCcH
Confidence 4567778889999999999765322235788999999999877544445555677788888888888889988887543
Q ss_pred -HHHHHHHHHHH
Q 008205 233 -IWGLEVLNAAK 243 (574)
Q Consensus 233 -~~~~~il~~a~ 243 (574)
-++..++....
T Consensus 100 v~D~aK~ia~~~ 111 (383)
T 3ox4_A 100 PHDCAKAIALVA 111 (383)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 44455554443
No 155
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=83.77 E-value=11 Score=33.40 Aligned_cols=79 Identities=5% Similarity=-0.100 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCC-------CChhhHHHHHHHhhcC--CC
Q 008205 153 MAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPK-------GSRNQIIDTLLTVSSM--MS 223 (574)
Q Consensus 153 ~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~-------~~~~~~~~~l~~ik~~--~~ 223 (574)
..++++.++..|-++|+++. .+.....+.+++.+++.|+.+......... .+...+.+.++++.+. ++
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt---~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ga 172 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGT---PYIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKA 172 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---SSCHHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTS
T ss_pred HHHHHHHHHHcCCCeEEEEe---CCchHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCC
Confidence 35666666777889999996 344445567778888899887554433221 1234455666666555 77
Q ss_pred eEEEEEeChHH
Q 008205 224 RILILHTYDIW 234 (574)
Q Consensus 224 ~viil~~~~~~ 234 (574)
+.||+.|..-.
T Consensus 173 daIvLgCT~l~ 183 (223)
T 2dgd_A 173 DAVYIACTALS 183 (223)
T ss_dssp SEEEECCTTSC
T ss_pred CEEEEeCCccc
Confidence 77887775443
No 156
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=82.97 E-value=8 Score=34.54 Aligned_cols=113 Identities=13% Similarity=0.140 Sum_probs=59.7
Q ss_pred HHHhHhcCcEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEE
Q 008205 90 ALTLLENETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVI 169 (574)
Q Consensus 90 ~~~l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ 169 (574)
+..+...|+.+|+-+-.+. ..+..+-...++|+++.. .+.++.....+ ++|+
T Consensus 68 ~~~l~~~g~d~iviaCnta--~~~~~l~~~~~iPvi~i~-------------------------~~~~~~a~~~~-~rig 119 (228)
T 2eq5_A 68 AKEFEREGVDAIIISCAAD--PAVEKVRKLLSIPVIGAG-------------------------SSVSALALAYG-RRVG 119 (228)
T ss_dssp HHHHHHTTCSEEEECSTTC--TTHHHHHHHCSSCEEEHH-------------------------HHHHHHHHTTC-SSEE
T ss_pred HHHHHHCCCCEEEEeCCch--HHHHHHHHhCCCCEeCcc-------------------------HHHHHHHHHhC-CeEE
Confidence 3344456888877544333 444555566788888631 11111122356 7888
Q ss_pred EEEEcCCCCcchHHHHHHHH-hhcCcEEEEEe-----ecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHH
Q 008205 170 ALYVDDDHGRNGIAALGDKL-AEKRCRLSHKV-----PLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIW 234 (574)
Q Consensus 170 ii~~~~~~g~~~~~~l~~~~-~~~g~~v~~~~-----~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~ 234 (574)
++...... . ..+++.+ ++.|..+.... .+........+...++.+.+.+++.||+.|..-.
T Consensus 120 Vlat~~t~---~-~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~d~IvLgCT~~~ 186 (228)
T 2eq5_A 120 VLNLTEET---P-KVIRSILGNNLIAEDHPSGVSNTLDLLTDWGRREVINAAKRLKEKGVEVIALGCTGMS 186 (228)
T ss_dssp EECSSSCC---C-HHHHHHHGGGEEEEECCTTCCSGGGGGSHHHHHHHHHHHHHHHHTTCSEEEECCTHHH
T ss_pred EEecCccc---H-HHHHHHHHHHhCccccCCceeeHHHhcChHHHHHHHHHHHHHHHcCCCEEEECCCCcc
Confidence 88764332 1 3466777 66665532110 0000001223455566666668888888887544
No 157
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=81.74 E-value=0.96 Score=43.03 Aligned_cols=38 Identities=5% Similarity=-0.110 Sum_probs=33.8
Q ss_pred HHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhcccccc
Q 008205 500 IDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKR 545 (574)
Q Consensus 500 idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~ 545 (574)
.+|++.+++.+|.+ .+++... .|++++..|..|++|++
T Consensus 24 ~~l~~~l~k~lG~~--ve~~~~~------~~~~~i~al~~G~vDi~ 61 (310)
T 3n5l_A 24 EPFLKDMSQQTGYQ--VKAFFAP------DYAGIIQGMRFDKVDIA 61 (310)
T ss_dssp HHHHHHHHHHHSSE--EEEECCS------SHHHHHHHHHTTSCSEE
T ss_pred HHHHHHHHHHhCCC--EEEEeCC------CHHHHHHHHHcCCCCEE
Confidence 48999999999988 7876543 89999999999999999
No 158
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=81.24 E-value=21 Score=33.20 Aligned_cols=120 Identities=8% Similarity=-0.073 Sum_probs=73.2
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHLV 113 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 113 (574)
+||.+...... . ...+++.++++.| +. +..+.+...-.++..+.+.+.+++++++.+|+....... ..+
T Consensus 128 ~Ig~i~g~~~~--~-r~~Gf~~~~~~~~------~~-~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~~D~~a-~Gv 196 (296)
T 2hqb_A 128 KVGVIAAFPWQ--P-EVEGFVDGAKYMN------ES-EAFVRYVGEWTDADKALELFQELQKEQVDVFYPAGDGYH-VPV 196 (296)
T ss_dssp EEEEEESCTTC--H-HHHHHHHHHHHTT------CC-EEEEEECSSSSCHHHHHHHHHHHHTTTCCEEECCCTTTH-HHH
T ss_pred eEEEEcCcCch--h-hHHHHHHHHHHhC------CC-eEEEEeeccccCHHHHHHHHHHHHHCCCcEEEECCCCCC-HHH
Confidence 68888755322 1 6788999998865 23 444333322236777778888999889999997555433 334
Q ss_pred HHhhccCCccEEecccCCCCcCCC-CCCceEEecCChHHHHHHHHHHHHHcCCeE
Q 008205 114 SHIANEFQVPLLSFAATDPSLSSL-QYPFFVRTTQSDLYQMAAIADIVDYFGWRN 167 (574)
Q Consensus 114 a~~~~~~~iP~Is~~~~~~~ls~~-~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~ 167 (574)
...+.+.++.+|.+... .+.. ..|.+..+..+....+...++.+..=.|+.
T Consensus 197 ~~a~~e~Gv~viG~D~~---~~~~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~~ 248 (296)
T 2hqb_A 197 VEAIKDQGDFAIGYVGD---QADLGGSTILTSTVQHVDDLYVLVAKRFQEGKLES 248 (296)
T ss_dssp HHHHHHHTCEEEEEESC---CSSSSCSSEEEEEEECHHHHHHHHHHHTTTTCCCC
T ss_pred HHHHHHcCCEEEEEecc---hhhhCCCeEEEEEEEEhHHHHHHHHHHHHcCCCCC
Confidence 45566677888887542 1221 124565565555555555555554446764
No 159
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=77.46 E-value=3.2 Score=40.73 Aligned_cols=101 Identities=11% Similarity=0.003 Sum_probs=67.1
Q ss_pred CceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhh
Q 008205 140 PFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVS 219 (574)
Q Consensus 140 ~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik 219 (574)
|+-+...+... ..+.++++.++.+++.+|++.........+.+.+.+++.|+.+.....+.++.+.+.+.+.++.++
T Consensus 9 p~~i~~G~g~~---~~l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~ 85 (386)
T 1rrm_A 9 NETAWFGRGAV---GALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQ 85 (386)
T ss_dssp CSEEEESTTGG---GGHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHH
T ss_pred CceEEECcCHH---HHHHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHH
Confidence 44444444322 345667777888999999855432223678889999888987654444555566777888888888
Q ss_pred cCCCeEEEEEeC--hHHHHHHHHHHH
Q 008205 220 SMMSRILILHTY--DIWGLEVLNAAK 243 (574)
Q Consensus 220 ~~~~~viil~~~--~~~~~~il~~a~ 243 (574)
+.+.+.||-.+. .-++..++....
T Consensus 86 ~~~~d~IIavGGGsv~D~aK~iA~~~ 111 (386)
T 1rrm_A 86 NSGADYLIAIGGGSPQDTCKAIGIIS 111 (386)
T ss_dssp HHTCSEEEEEESHHHHHHHHHHHHHH
T ss_pred hcCcCEEEEeCChHHHHHHHHHHHHH
Confidence 888898887654 455555554443
No 160
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=77.16 E-value=6.3 Score=38.93 Aligned_cols=87 Identities=11% Similarity=0.091 Sum_probs=59.5
Q ss_pred HHHHHHHHcCCeEEEEEEEcCCCCc-chHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC--
Q 008205 155 AIADIVDYFGWRNVIALYVDDDHGR-NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-- 231 (574)
Q Consensus 155 ai~~ll~~~~W~~v~ii~~~~~~g~-~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-- 231 (574)
.+.++++.+|.+++.+|+++..... ...+.+.+.+++.|+.+.....+.++++...+.+.++.+++.+.+.||-.+.
T Consensus 33 ~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 112 (407)
T 1vlj_A 33 KIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGGS 112 (407)
T ss_dssp GHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEESHH
T ss_pred HHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChh
Confidence 4566788889999999985332222 2578888999888887653333333456677888888898899998887654
Q ss_pred hHHHHHHHHH
Q 008205 232 DIWGLEVLNA 241 (574)
Q Consensus 232 ~~~~~~il~~ 241 (574)
.-++..++..
T Consensus 113 viD~AK~iA~ 122 (407)
T 1vlj_A 113 VVDSAKAVAA 122 (407)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 161
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=76.36 E-value=15 Score=35.64 Aligned_cols=98 Identities=10% Similarity=0.055 Sum_probs=65.7
Q ss_pred CceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCc-chHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHh
Q 008205 140 PFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGR-NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTV 218 (574)
Q Consensus 140 ~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~-~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i 218 (574)
|+-+...+... ..+.++++.++ +++.+|++...... ...+.+.+.+++.|+.+.....+..+.+.+.+.+.++.+
T Consensus 19 p~~i~~G~g~~---~~l~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~ 94 (371)
T 1o2d_A 19 PTDVFFGEKIL---EKRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERY 94 (371)
T ss_dssp CCEEEESTTHH---HHHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHH
T ss_pred CceEEECcCHH---HHHHHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHH
Confidence 45555554422 34566677788 99999997643322 257889999988888765444455556777888888999
Q ss_pred hcCCCeEEEEEeC--hHHHHHHHHH
Q 008205 219 SSMMSRILILHTY--DIWGLEVLNA 241 (574)
Q Consensus 219 k~~~~~viil~~~--~~~~~~il~~ 241 (574)
++.+.+.||-.+. .-++..++..
T Consensus 95 ~~~~~d~IIavGGGsv~D~AK~iA~ 119 (371)
T 1o2d_A 95 RNDSFDFVVGLGGGSPMDFAKAVAV 119 (371)
T ss_dssp TTSCCSEEEEEESHHHHHHHHHHHH
T ss_pred HhcCCCEEEEeCChHHHHHHHHHHH
Confidence 8889998887654 3444444443
No 162
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=75.73 E-value=13 Score=33.26 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=24.8
Q ss_pred HHHHHhHhcCcEEEEcCCChHHHHHHHHhhccCCccEEec
Q 008205 88 VEALTLLENETVAIIGPQFSVIAHLVSHIANEFQVPLLSF 127 (574)
Q Consensus 88 ~~~~~l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~ 127 (574)
+.+..+.+.|+.+|+-+-.+.+ ..+..+-...++|++..
T Consensus 65 ~~~~~l~~~g~d~iviaCnTa~-~~~~~l~~~~~iPvi~i 103 (228)
T 1jfl_A 65 WTAKRLEECGADFIIMPCNTAH-AFVEDIRKAIKIPIISM 103 (228)
T ss_dssp HHHHHHHHHTCSEEECSCTGGG-GGHHHHHHHCSSCBCCH
T ss_pred HHHHHHHHcCCCEEEEcCccHH-HHHHHHHHhCCCCEech
Confidence 3344444559998887655554 44556666778888863
No 163
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=73.53 E-value=4.5 Score=39.64 Aligned_cols=74 Identities=11% Similarity=0.033 Sum_probs=49.0
Q ss_pred HHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh
Q 008205 155 AIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD 232 (574)
Q Consensus 155 ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~ 232 (574)
.+.++++.+| +++.+|++...+. ...+.+.+.+++ |+.+.+ ..+..+.+..++.+.++.+++.+.+.||-.+..
T Consensus 43 ~l~~~l~~~g-~r~liVtd~~~~~-~~~~~v~~~L~~-g~~~~~-~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGG 116 (387)
T 3uhj_A 43 KLAAYLAPLG-KRALVLIDRVLFD-ALSERIGKSCGD-SLDIRF-ERFGGECCTSEIERVRKVAIEHGSDILVGVGGG 116 (387)
T ss_dssp TTHHHHGGGC-SEEEEEECTTTHH-HHHHHC-------CCEEEE-EECCSSCSHHHHHHHHHHHHHHTCSEEEEESSH
T ss_pred HHHHHHHHcC-CEEEEEECchHHH-HHHHHHHHHHHc-CCCeEE-EEcCCCCCHHHHHHHHHHHhhcCCCEEEEeCCc
Confidence 4567788889 9999998665432 356778888888 887743 345555667778888888888889988877543
No 164
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=70.23 E-value=58 Score=28.84 Aligned_cols=134 Identities=11% Similarity=0.106 Sum_probs=83.1
Q ss_pred EEEEecCCCCHHHHHHHHHHhHhc-CcEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHH
Q 008205 73 KLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLY 151 (574)
Q Consensus 73 ~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~ 151 (574)
.+.+.+ .+-..++..+.+++.. +..+||.- ..++..+. +..++|+|.... +..+
T Consensus 40 ~I~vi~--~~le~av~~a~~~~~~~~~dVIISR--Ggta~~Lr---~~~~iPVV~I~v------------------s~~D 94 (225)
T 2pju_A 40 NITPIQ--LGFEKAVTYIRKKLANERCDAIIAA--GSNGAYLK---SRLSVPVILIKP------------------SGYD 94 (225)
T ss_dssp EEEEEC--CCHHHHHHHHHHHTTTSCCSEEEEE--HHHHHHHH---TTCSSCEEEECC------------------CHHH
T ss_pred eEEEec--CcHHHHHHHHHHHHhcCCCeEEEeC--ChHHHHHH---hhCCCCEEEecC------------------CHHH
Confidence 444443 3345677777787765 68899852 23333333 456899997522 2344
Q ss_pred HHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC
Q 008205 152 QMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (574)
Q Consensus 152 ~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~ 231 (574)
..+++...-+ ++ +++++|...+. ...+..+.+.+ |+++.... + .+.++....++++++.+.++||-...
T Consensus 95 il~aL~~a~~-~~-~kIavVg~~~~--~~~~~~i~~ll---~~~i~~~~-~---~~~ee~~~~i~~l~~~G~~vVVG~~~ 163 (225)
T 2pju_A 95 VLQFLAKAGK-LT-SSIGVVTYQET--IPALVAFQKTF---NLRLDQRS-Y---ITEEDARGQINELKANGTEAVVGAGL 163 (225)
T ss_dssp HHHHHHHTTC-TT-SCEEEEEESSC--CHHHHHHHHHH---TCCEEEEE-E---SSHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred HHHHHHHHHh-hC-CcEEEEeCchh--hhHHHHHHHHh---CCceEEEE-e---CCHHHHHHHHHHHHHCCCCEEECCHH
Confidence 5566666544 33 58999875553 22345555555 45555432 3 36778999999999999998776432
Q ss_pred hHHHHHHHHHHHHCCCC
Q 008205 232 DIWGLEVLNAAKHLRMM 248 (574)
Q Consensus 232 ~~~~~~il~~a~~~gm~ 248 (574)
..+.|++.||.
T Consensus 164 ------~~~~A~~~Gl~ 174 (225)
T 2pju_A 164 ------ITDLAEEAGMT 174 (225)
T ss_dssp ------HHHHHHHTTSE
T ss_pred ------HHHHHHHcCCc
Confidence 35678888874
No 165
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=70.17 E-value=3.3 Score=39.46 Aligned_cols=38 Identities=3% Similarity=-0.178 Sum_probs=33.6
Q ss_pred HHHHHHHHHhCCCCcCeEEEECCCCCCCCChHHHHHHhhhcccccc
Q 008205 500 IDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVSMKR 545 (574)
Q Consensus 500 idl~~~~~~~l~f~~~y~~~~~~dg~~~~~~~gli~~l~~~~~d~~ 545 (574)
-+|++.|++.+|.+ .+++... .|++++..|..|++|++
T Consensus 34 ~~l~~~L~k~lG~~--ve~~~~~------~~~~~i~aL~~G~vDia 71 (321)
T 3p7i_A 34 TPFLQDMEKKLGVK--VNAFFAP------DYAGIIQGMRFNKVDIA 71 (321)
T ss_dssp HHHHHHHHHHHTSC--EEEECCS------SHHHHHHHHHTTSCSEE
T ss_pred HHHHHHHHHHHCCC--EEEEecC------CHHHHHHHHHcCCCcEE
Confidence 47899999999988 8887543 89999999999999999
No 166
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=69.98 E-value=54 Score=28.32 Aligned_cols=159 Identities=13% Similarity=0.100 Sum_probs=98.5
Q ss_pred eEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHH
Q 008205 32 VLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAH 111 (574)
Q Consensus 32 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~ 111 (574)
..+|.++.|.. ....-++-...+.+ .++.+.. .+-..++..+.++ .+|..+||. ...++.
T Consensus 4 ~~~I~~iapy~-----~l~~~~~~i~~e~~--------~~i~i~~----~~l~~~v~~a~~~-~~~~dVIIS--RGgta~ 63 (196)
T 2q5c_A 4 SLKIALISQNE-----NLLNLFPKLALEKN--------FIPITKT----ASLTRASKIAFGL-QDEVDAIIS--RGATSD 63 (196)
T ss_dssp CCEEEEEESCH-----HHHHHHHHHHHHHT--------CEEEEEE----CCHHHHHHHHHHH-TTTCSEEEE--EHHHHH
T ss_pred CCcEEEEEccH-----HHHHHHHHHHhhhC--------CceEEEE----CCHHHHHHHHHHh-cCCCeEEEE--CChHHH
Confidence 35788888873 33333444444432 2344332 3456688888888 889999995 223333
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhh
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAE 191 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~ 191 (574)
.+. +..++|+|.... +..+..+++...-++. +++++|...+.. ..++.+.+.+
T Consensus 64 ~lr---~~~~iPVV~I~~------------------s~~Dil~al~~a~~~~--~kIavvg~~~~~--~~~~~~~~ll-- 116 (196)
T 2q5c_A 64 YIK---KSVSIPSISIKV------------------TRFDTMRAVYNAKRFG--NELALIAYKHSI--VDKHEIEAML-- 116 (196)
T ss_dssp HHH---TTCSSCEEEECC------------------CHHHHHHHHHHHGGGC--SEEEEEEESSCS--SCHHHHHHHH--
T ss_pred HHH---HhCCCCEEEEcC------------------CHhHHHHHHHHHHhhC--CcEEEEeCcchh--hHHHHHHHHh--
Confidence 333 456899997521 2344567776665543 489998765532 2355666665
Q ss_pred cCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHHCCCC
Q 008205 192 KRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMM 248 (574)
Q Consensus 192 ~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~~gm~ 248 (574)
|+++.... + .+..+....++++++.+.++||-... ..+.|+++||.
T Consensus 117 -~~~i~~~~-~---~~~~e~~~~i~~l~~~G~~vvVG~~~------~~~~A~~~Gl~ 162 (196)
T 2q5c_A 117 -GVKIKEFL-F---SSEDEITTLISKVKTENIKIVVSGKT------VTDEAIKQGLY 162 (196)
T ss_dssp -TCEEEEEE-E---CSGGGHHHHHHHHHHTTCCEEEECHH------HHHHHHHTTCE
T ss_pred -CCceEEEE-e---CCHHHHHHHHHHHHHCCCeEEECCHH------HHHHHHHcCCc
Confidence 45555432 3 25678899999999999998776432 35678888874
No 167
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=69.03 E-value=75 Score=29.65 Aligned_cols=144 Identities=9% Similarity=-0.077 Sum_probs=89.2
Q ss_pred CHHHHHHHHHHhHhcCcEEE--EcCCCh-HHHHHHHHhhccC-CccEEecccCCCCcCCCCCCceEEecCChHHHHHHHH
Q 008205 82 SRFLGMVEALTLLENETVAI--IGPQFS-VIAHLVSHIANEF-QVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIA 157 (574)
Q Consensus 82 ~~~~a~~~~~~l~~~~v~ai--iGp~~s-~~~~~va~~~~~~-~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~ 157 (574)
.+..+...+.+.++.|+-++ +-+..+ .....+...+... ++.+|.+.+.- +-... ....-..|..
T Consensus 80 P~~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~liGPnc~G--ii~p~-~~~~~~~~~~-------- 148 (305)
T 2fp4_A 80 PPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPG--VINPG-ECKIGIMPGH-------- 148 (305)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCEEECSSSCE--EEETT-TEEEESSCGG--------
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHhcCCcEEEeCCCCe--Eeccc-ccceeecccc--------
Confidence 45566666777788777663 333333 2234678888888 99999765532 22211 1122223321
Q ss_pred HHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCC-hhhHHHHHHHhh-cCCCeEEEEEeCh---
Q 008205 158 DIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGS-RNQIIDTLLTVS-SMMSRILILHTYD--- 232 (574)
Q Consensus 158 ~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~-~~~~~~~l~~ik-~~~~~viil~~~~--- 232 (574)
.+.--++++|..+.. ....+.+.+.+.|+-++....+-.... ..++.+.|+.+. +.++++|+++...
T Consensus 149 ----~~~~G~va~vSqSG~----l~~~~~~~~~~~g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~g~ 220 (305)
T 2fp4_A 149 ----IHKKGRIGIVSRSGT----LTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGN 220 (305)
T ss_dssp ----GCCEEEEEEEESCSH----HHHHHHHHHHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEEEESSSS
T ss_pred ----CCCCCCEEEEecchH----HHHHHHHHHHhcCCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEEEecCCc
Confidence 234467999986653 456677777888876666555543221 356778888775 4589999999775
Q ss_pred --HHHHHHHHHHHH
Q 008205 233 --IWGLEVLNAAKH 244 (574)
Q Consensus 233 --~~~~~il~~a~~ 244 (574)
++++.+++.+.+
T Consensus 221 ~e~~~~~f~~~~~~ 234 (305)
T 2fp4_A 221 AEENAAEFLKQHNS 234 (305)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred hhhHHHHHHHHHHH
Confidence 568899987754
No 168
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=68.54 E-value=84 Score=30.00 Aligned_cols=131 Identities=18% Similarity=0.250 Sum_probs=75.5
Q ss_pred EEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEE--cCCChHHH
Q 008205 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAII--GPQFSVIA 110 (574)
Q Consensus 33 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii--Gp~~s~~~ 110 (574)
=.++.+|...+. +.+.+|+.|+.++ +|..+.+...+++-.--+.++-..+.++.-+.+|+ .+. .
T Consensus 42 K~la~lF~epST---RTR~SFE~A~~~L-------Gg~vi~l~~~~ssl~kgEsl~DTarvLs~y~D~IviR~~~----~ 107 (355)
T 4a8p_A 42 KSLGMIFQQSST---RTRVSFETAMEQL-------GGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVER----H 107 (355)
T ss_dssp CEEEEEESSCCS---HHHHHHHHHHHHT-------TCEEEEECBTTBCBTTTBCHHHHHHHHTTTCSEEEEECSS----H
T ss_pred CEEEEEecCCCh---hhHhhHHHHHHHc-------CCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCc----H
Confidence 368899987663 7889999999985 45444443333322222233333444454333333 332 2
Q ss_pred HHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHc--C--C--eEEEEEEEcCCCCcch
Q 008205 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYF--G--W--RNVIALYVDDDHGRNG 181 (574)
Q Consensus 111 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~--~--W--~~v~ii~~~~~~g~~~ 181 (574)
..+..++...+||+|.-+ + +.. +| .++++|++ +++ | + .+|+++. |. ...
T Consensus 108 ~~~~~lA~~~~vPVINag-~-----~~~-------HP-----tQaLaDl~TI~E~~~~G~~l~glkva~vG--D~--~rv 165 (355)
T 4a8p_A 108 HSIVDLANCATIPVINGM-S-----DYN-------HP-----TQELGDLCTMVEHLPEGKKLEDCKVVFVG--DA--TQV 165 (355)
T ss_dssp HHHHHHHHHCSSCEEECC-C-----SSC-------CH-----HHHHHHHHHHHHTCCTTCCGGGCEEEEES--CC--CHH
T ss_pred HHHHHHHHhCCCCEEeCC-C-----CCC-------Cc-----HHHHHHHHHHHHHhhcCCCCCCCEEEEEC--CC--chh
Confidence 334556667789999742 2 111 22 36777763 566 5 3 4677665 22 345
Q ss_pred HHHHHHHHhhcCcEEEEE
Q 008205 182 IAALGDKLAEKRCRLSHK 199 (574)
Q Consensus 182 ~~~l~~~~~~~g~~v~~~ 199 (574)
...+...+...|.++...
T Consensus 166 a~Sl~~~~~~~G~~v~~~ 183 (355)
T 4a8p_A 166 CFSLGLITTKMGMNFVHF 183 (355)
T ss_dssp HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHcCCEEEEE
Confidence 677777888889877654
No 169
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=67.31 E-value=80 Score=29.94 Aligned_cols=129 Identities=17% Similarity=0.197 Sum_probs=73.2
Q ss_pred EEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC---CCH-HHHHHHHHHhHhcCcEEEEcCCChH
Q 008205 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTN---YSR-FLGMVEALTLLENETVAIIGPQFSV 108 (574)
Q Consensus 33 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~---~~~-~~a~~~~~~l~~~~v~aiiGp~~s~ 108 (574)
=.|+.+|...+ -+.+.+|+.|+.++ +|..+.+...+++ +.+ ..+++.+..+ -.++++=++..
T Consensus 64 k~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ssl~kgEsl~DTarvLs~~--~D~IviR~~~~-- 129 (339)
T 4a8t_A 64 KSLGMIFQQSS---TRTRVSFETAMEQL-------GGHGEYLAPGQIQLGGHETIEDTSRVLSRL--VDILMARVERH-- 129 (339)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEECCC-CCSSSSSCHHHHHHHHHHH--CSEEEEECSSH--
T ss_pred ceEEEEecCCC---chHHHHHHHHHHHc-------CCeEEEeCcccccCCCCcCHHHHHHHHHHh--CCEEEEecCcH--
Confidence 36889997765 37889999999985 4444444332322 222 2233322222 13444444432
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHc--C--C--eEEEEEEEcCCCCc
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYF--G--W--RNVIALYVDDDHGR 179 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~--~--W--~~v~ii~~~~~~g~ 179 (574)
..+..++...+||+|.-. + +.. +| .++++|++ +++ | + .+|+++. |. .
T Consensus 130 --~~~~~lA~~~~vPVINag-~-----~~~-------HP-----tQaLaDl~Ti~e~~~~G~~l~glkva~vG--D~--~ 185 (339)
T 4a8t_A 130 --HSIVDLANCATIPVINGM-S-----DYN-------HP-----TQELGDLCTMVEHLPEGKKLEDCKVVFVG--DA--T 185 (339)
T ss_dssp --HHHHHHHHHCSSCEEECC-C-----SSC-------CH-----HHHHHHHHHHHHTCCTTCCGGGCEEEEES--SC--C
T ss_pred --HHHHHHHHhCCCCEEECC-C-----CCc-------Cc-----HHHHHHHHHHHHHhhcCCCCCCCEEEEEC--CC--c
Confidence 334556667789999742 2 111 22 36777763 566 5 2 5777765 22 3
Q ss_pred chHHHHHHHHhhcCcEEEEE
Q 008205 180 NGIAALGDKLAEKRCRLSHK 199 (574)
Q Consensus 180 ~~~~~l~~~~~~~g~~v~~~ 199 (574)
.....+...+...|.++...
T Consensus 186 rva~Sl~~~~~~~G~~v~~~ 205 (339)
T 4a8t_A 186 QVCFSLGLITTKMGMNFVHF 205 (339)
T ss_dssp HHHHHHHHHHHHTTCEEEEE
T ss_pred hhHHHHHHHHHHcCCEEEEE
Confidence 45677777888889877654
No 170
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=67.06 E-value=15 Score=35.41 Aligned_cols=95 Identities=8% Similarity=0.017 Sum_probs=61.5
Q ss_pred CceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhh
Q 008205 140 PFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVS 219 (574)
Q Consensus 140 ~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik 219 (574)
|+-+...+... ..+.++++.++.+++.+|++..... ...+.+.+.+++.|+.+...... ++.+.+.+.+. +.++
T Consensus 12 p~~i~~G~g~~---~~l~~~l~~~g~~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~~~~~-~~~~~~~v~~~-~~~~ 85 (354)
T 3ce9_A 12 PLILEVGNNKI---YNIGQIIKKGNFKRVSLYFGEGIYE-LFGETIEKSIKSSNIEIEAVETV-KNIDFDEIGTN-AFKI 85 (354)
T ss_dssp CSEEEEESSCG---GGHHHHHGGGTCSEEEEEEETTHHH-HHHHHHHHHHHTTTCEEEEEEEE-CCCBHHHHHHH-HTTS
T ss_pred CcEEEECCCHH---HHHHHHHHhcCCCeEEEEECccHHH-HHHHHHHHHHHHcCCeEEEEecC-CCCCHHHHHHH-HHhh
Confidence 55455554432 3356778888889999999665332 35688888898888876543322 33456667777 7788
Q ss_pred cCCCeEEEEEeCh--HHHHHHHH
Q 008205 220 SMMSRILILHTYD--IWGLEVLN 240 (574)
Q Consensus 220 ~~~~~viil~~~~--~~~~~il~ 240 (574)
+.+.+.||-.+.. -++..++.
T Consensus 86 ~~~~d~IIavGGGsv~D~aK~vA 108 (354)
T 3ce9_A 86 PAEVDALIGIGGGKAIDAVKYMA 108 (354)
T ss_dssp CTTCCEEEEEESHHHHHHHHHHH
T ss_pred hcCCCEEEEECChHHHHHHHHHH
Confidence 8888988876543 44444443
No 171
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=66.30 E-value=35 Score=24.81 Aligned_cols=68 Identities=15% Similarity=0.200 Sum_probs=44.2
Q ss_pred eEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHh
Q 008205 142 FVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTV 218 (574)
Q Consensus 142 ~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i 218 (574)
.+-+.-.+...+.....+++..|-+-..+||+.+. ..++.|....++.|..+... .+.+|+..-|.++
T Consensus 53 ivvvvvddkewaekairfvkslgaqvliiiydqdq---nrleefsrevrrrgfevrtv------tspddfkkslerl 120 (134)
T 2l69_A 53 IVVVVVDDKEWAEKAIRFVKSLGAQVLIIIYDQDQ---NRLEEFSREVRRRGFEVRTV------TSPDDFKKSLERL 120 (134)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHCCCCEEEEECSCH---HHHHHHHHHHHHTTCCEEEE------SSHHHHHHHHHHH
T ss_pred EEEEEEccHHHHHHHHHHHHhcCCeEEEEEEeCch---hHHHHHHHHHHhcCceEEEe------cChHHHHHHHHHH
Confidence 34444556667777777888888888888886553 46777778888888766432 1345555555543
No 172
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=65.37 E-value=86 Score=29.26 Aligned_cols=128 Identities=16% Similarity=0.146 Sum_probs=73.4
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC---CCH-HHHHHHHHHhHhcCcEEEEcCCChHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTN---YSR-FLGMVEALTLLENETVAIIGPQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~---~~~-~~a~~~~~~l~~~~v~aiiGp~~s~~ 109 (574)
.++.+|...+ -+.+.+|+.|+.++ +|..+.+...+++ +.+ .-+++.+..+ -.++++=.+..
T Consensus 38 ~la~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~--~D~iviR~~~~--- 102 (307)
T 3tpf_A 38 TLAMIFEKNS---TRTRMAFELAITEL-------GGKALFLSSNDLQLSRGEPVKDTARVIGAM--VDFVMMRVNKH--- 102 (307)
T ss_dssp EEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECTTTCCTTTSSCHHHHHHHHHHH--SSEEEEECSCH---
T ss_pred EEEEEecCCC---cchHHhHHHHHHHc-------CCeEEEcCcccccCCCCCCHHHHHHHHHHh--CCEEEEecCCh---
Confidence 5899997765 36889999999985 4444444332322 222 2233333232 13444434432
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcC-Ce---EEEEEEEcCCCCcchH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG-WR---NVIALYVDDDHGRNGI 182 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~-W~---~v~ii~~~~~~g~~~~ 182 (574)
..+..++...+||+|.-+ ++ ...| .++++|++ +++| ++ +++++.+ +....
T Consensus 103 -~~~~~lA~~~~vPVINag-~~-----~~HP------------tQaLaDl~Ti~e~~g~l~~gl~va~vGD----~~~va 159 (307)
T 3tpf_A 103 -ETLLEFARYSKAPVINAL-SE-----LYHP------------TQVLGDLFTIKEWNKMQNGIAKVAFIGD----SNNMC 159 (307)
T ss_dssp -HHHHHHHHHCSSCEEEEE-CS-----SCCH------------HHHHHHHHHHHHTTCCGGGCCEEEEESC----SSHHH
T ss_pred -HHHHHHHHhCCCCEEeCC-CC-----CcCc------------HHHHHHHHHHHHHhCCCCCCCEEEEEcC----CCccH
Confidence 334566677789999842 21 1112 36778764 4554 44 6777753 24467
Q ss_pred HHHHHHHhhcCcEEEEE
Q 008205 183 AALGDKLAEKRCRLSHK 199 (574)
Q Consensus 183 ~~l~~~~~~~g~~v~~~ 199 (574)
..+...+...|.++...
T Consensus 160 ~Sl~~~~~~~G~~v~~~ 176 (307)
T 3tpf_A 160 NSWLITAAILGFEISIA 176 (307)
T ss_dssp HHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHcCCEEEEE
Confidence 77777888889877654
No 173
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=64.79 E-value=94 Score=29.22 Aligned_cols=130 Identities=18% Similarity=0.184 Sum_probs=71.5
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEE--cCCChHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAII--GPQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii--Gp~~s~~~~ 111 (574)
.++.+|...+ -+.+.+|+.|+.++ +|..+.+...+++-.--+.++-..+.++.-+.+|+ .+.. .
T Consensus 50 ~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~~~----~ 115 (323)
T 3gd5_A 50 VLGLVFLKAS---TRTRVSFTVAMYQL-------GGQVIDLSPSNTQVGRGEPVRDTARVLGRYVDGLAIRTFAQ----T 115 (323)
T ss_dssp EEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEC----------CCHHHHHHHHTTTCSEEEEECSSH----H
T ss_pred EEEEEecCCC---cchHhhHHHHHHHc-------CCeEEEeCcccccCCCCCCHHHHHHHHHHhCCEEEEecCCh----h
Confidence 6888998765 47889999999985 44444443333322112223333344454344444 4432 2
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcC---CeEEEEEEEcCCCCcchHHHH
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG---WRNVIALYVDDDHGRNGIAAL 185 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~---W~~v~ii~~~~~~g~~~~~~l 185 (574)
.+..++....||+|.-+. + ...| .++++|++ +++| -.+|+++.+- ......+
T Consensus 116 ~~~~lA~~~~vPVINag~-~-----~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vGD~----~rva~Sl 173 (323)
T 3gd5_A 116 ELEEYAHYAGIPVINALT-D-----HEHP------------CQVVADLLTIRENFGRLAGLKLAYVGDG----NNVAHSL 173 (323)
T ss_dssp HHHHHHHHHCSCEEEEEC-S-----SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESCC----CHHHHHH
T ss_pred HHHHHHHhCCCCEEeCCC-C-----CCCc------------HHHHHHHHHHHHHhCCCCCCEEEEECCC----CcHHHHH
Confidence 344556667899998432 1 1112 36777763 4544 4678777522 3456667
Q ss_pred HHHHhhcCcEEEEE
Q 008205 186 GDKLAEKRCRLSHK 199 (574)
Q Consensus 186 ~~~~~~~g~~v~~~ 199 (574)
...+...|.++...
T Consensus 174 ~~~~~~~G~~v~~~ 187 (323)
T 3gd5_A 174 LLGCAKVGMSIAVA 187 (323)
T ss_dssp HHHHHHHTCEEEEE
T ss_pred HHHHHHcCCEEEEE
Confidence 77777788877654
No 174
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=64.18 E-value=27 Score=31.97 Aligned_cols=38 Identities=11% Similarity=0.232 Sum_probs=25.9
Q ss_pred HHHhHhcCcEEEEcCCChHHHHHHHHhhccCCccEEec
Q 008205 90 ALTLLENETVAIIGPQFSVIAHLVSHIANEFQVPLLSF 127 (574)
Q Consensus 90 ~~~l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~ 127 (574)
+..+.+.|+.+|+-+-.+.++..+..+-...++|+|..
T Consensus 58 ~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvigi 95 (267)
T 2gzm_A 58 TEHLLDLNIKMLVIACNTATAVVLEEMQKQLPIPVVGV 95 (267)
T ss_dssp HHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEES
T ss_pred HHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEee
Confidence 33444569999887555555445667777889999973
No 175
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=63.05 E-value=27 Score=30.94 Aligned_cols=75 Identities=20% Similarity=0.162 Sum_probs=43.6
Q ss_pred hHhcCcEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEE
Q 008205 93 LLENETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALY 172 (574)
Q Consensus 93 l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~ 172 (574)
+.+.|+.+|+-+-.+.... +..+-...++|++.. ..+.++-+...+-++|+++.
T Consensus 69 L~~~g~d~iviaCnTa~~~-~~~l~~~~~iPvi~i-------------------------~~a~~~~~~~~~~~rigvla 122 (226)
T 2zsk_A 69 LERAGAELIAFAANTPHLV-FDDVQREVNVPMVSI-------------------------IDAVAEEILKRGVRKVLLLG 122 (226)
T ss_dssp HHHHTCSEEEESSSGGGGG-HHHHHHHCSSCBCCH-------------------------HHHHHHHHHHTTCCEEEEES
T ss_pred HHHcCCCEEEECCCcHHHH-HHHHHHhCCCCEecc-------------------------HHHHHHHHHHcCCCeEEEEe
Confidence 3345888888655554432 345556668887753 13333333445678999997
Q ss_pred EcCCCCcchHHHHHHHHhhcCcEE
Q 008205 173 VDDDHGRNGIAALGDKLAEKRCRL 196 (574)
Q Consensus 173 ~~~~~g~~~~~~l~~~~~~~g~~v 196 (574)
..... . ...+++.+++.|+.+
T Consensus 123 T~~T~--~-~~~y~~~l~~~g~~v 143 (226)
T 2zsk_A 123 TKTTM--T-ADFYIKTLEEKGLEV 143 (226)
T ss_dssp STTTT--S-CHHHHHHHHTTTCEE
T ss_pred CHHHH--h-hhHHHHHHHHCCCEE
Confidence 43321 1 235667777778775
No 176
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=62.63 E-value=1.2e+02 Score=30.37 Aligned_cols=142 Identities=13% Similarity=0.063 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHhHhcCcEEEEcC-CC-hHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHH
Q 008205 82 SRFLGMVEALTLLENETVAIIGP-QF-SVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADI 159 (574)
Q Consensus 82 ~~~~a~~~~~~l~~~~v~aiiGp-~~-s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~l 159 (574)
.+..+...+.+..+.|+-+|+=. .. ......+..++...++.+|.+.+ ....... +......
T Consensus 45 Pa~~v~~~v~e~~~~Gv~~viis~Gf~~~~~~~l~~~A~~~g~rliGPNc--G~~~~~~----~~~~f~~---------- 108 (480)
T 3dmy_A 45 AGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDC--GTSMIAG----TPLAFAN---------- 108 (480)
T ss_dssp CHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHHTTCCEECSSC--CEEEETT----EEEESCC----------
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCc--cccccCC----ccccccC----------
Confidence 44556666777777776655421 11 23344577788889999998776 2221111 1111111
Q ss_pred HHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCC-----ChhhHHHHHHHhhc-CCCeEEEEEeC--
Q 008205 160 VDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKG-----SRNQIIDTLLTVSS-MMSRILILHTY-- 231 (574)
Q Consensus 160 l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~-----~~~~~~~~l~~ik~-~~~~viil~~~-- 231 (574)
.+.--++++|..+.. ....+.+.+.+.|+-++....+-... ...++.+.|+.+.+ .++++|+++..
T Consensus 109 --~~~~G~vaivSqSGa----l~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~E~~ 182 (480)
T 3dmy_A 109 --VMPEGNIGVIGASGT----GIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPP 182 (480)
T ss_dssp --CCCEEEEEEEESCSH----HHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEESCC
T ss_pred --CCCCCCEEEEeccHH----HHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEEecC
Confidence 022358999986653 45667777888887777665554321 44568888888765 57899999885
Q ss_pred -hHHHHHHHHHHHHC
Q 008205 232 -DIWGLEVLNAAKHL 245 (574)
Q Consensus 232 -~~~~~~il~~a~~~ 245 (574)
...++.+++.|++.
T Consensus 183 ~e~~~~~f~~~ar~~ 197 (480)
T 3dmy_A 183 AEAVRLKIVNAMKAT 197 (480)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhC
Confidence 23357888888763
No 177
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=62.37 E-value=27 Score=32.51 Aligned_cols=79 Identities=10% Similarity=0.069 Sum_probs=55.4
Q ss_pred eEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC-hHHHHHHHHHH
Q 008205 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNAA 242 (574)
Q Consensus 166 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-~~~~~~il~~a 242 (574)
++|+++..+ +++.....+.+++.+++.|+.+..... ..+.......++.+...+.+.||+... .......++++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA---NGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEA 79 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHH
Confidence 468888764 567777888999999999988765432 234445566777777788888888754 33335677777
Q ss_pred HHCCC
Q 008205 243 KHLRM 247 (574)
Q Consensus 243 ~~~gm 247 (574)
.+.|+
T Consensus 80 ~~~~i 84 (313)
T 3m9w_A 80 KQEGI 84 (313)
T ss_dssp HTTTC
T ss_pred HHCCC
Confidence 77664
No 178
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=62.35 E-value=76 Score=30.07 Aligned_cols=128 Identities=19% Similarity=0.151 Sum_probs=72.1
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC---CCH-HHHHHHHHHhHhcCcEEEEcCCChHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTN---YSR-FLGMVEALTLLENETVAIIGPQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~---~~~-~~a~~~~~~l~~~~v~aiiGp~~s~~ 109 (574)
.++.+|...+ -+.+.+|+.|+.++ +|..+.+...+++ +.+ ..+++.+..+ -.++++=.+..
T Consensus 72 ~la~lF~epS---TRTR~SFE~A~~~L-------Gg~vi~l~~~~ss~~kgEsl~DTarvLs~y--~D~IviR~~~~--- 136 (340)
T 4ep1_A 72 ILGLIFDKHS---TRTRVSFEAGMVQL-------GGHGMFLNGKEMQMGRGETVSDTAKVLSHY--IDGIMIRTFSH--- 136 (340)
T ss_dssp EEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEEESCC------CCTTHHHHHHHHH--CSEEEEECSCH---
T ss_pred eEEEEecCCC---ccHHHHHHHHHHHc-------CCeEEEcCcccccCCCCCCHHHHHHHHHHh--CCEEEEecCCh---
Confidence 6888997765 47889999999985 4444444332222 111 2223322222 13444444432
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcC---CeEEEEEEEcCCCCcchHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG---WRNVIALYVDDDHGRNGIA 183 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~---W~~v~ii~~~~~~g~~~~~ 183 (574)
..+..++...+||+|.-+ ++ ...| .++++|++ +++| -.+|+++. |. .....
T Consensus 137 -~~~~~lA~~~~vPVINag-~~-----~~HP------------tQaLaDl~TI~E~~G~l~glkva~vG--D~--~nva~ 193 (340)
T 4ep1_A 137 -ADVEELAKESSIPVINGL-TD-----DHHP------------CQALADLMTIYEETNTFKGIKLAYVG--DG--NNVCH 193 (340)
T ss_dssp -HHHHHHHHHCSSCEEEEE-CS-----SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEES--CC--CHHHH
T ss_pred -hHHHHHHHhCCCCEEeCC-CC-----CCCc------------HHHHHHHHHHHHHhCCCCCCEEEEEC--CC--chhHH
Confidence 334566677789999832 21 1112 36777763 4554 46777775 22 34667
Q ss_pred HHHHHHhhcCcEEEEE
Q 008205 184 ALGDKLAEKRCRLSHK 199 (574)
Q Consensus 184 ~l~~~~~~~g~~v~~~ 199 (574)
.+...+...|.++...
T Consensus 194 Sl~~~~~~~G~~v~~~ 209 (340)
T 4ep1_A 194 SLLLASAKVGMHMTVA 209 (340)
T ss_dssp HHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHcCCEEEEE
Confidence 7777777888877654
No 179
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=61.31 E-value=36 Score=31.23 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=25.1
Q ss_pred HHhHhcCcEEEEcCCChHHHHHHHHhhccCCccEEec
Q 008205 91 LTLLENETVAIIGPQFSVIAHLVSHIANEFQVPLLSF 127 (574)
Q Consensus 91 ~~l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~ 127 (574)
..+.+.|+.+|+-+-.+.++..+..+-...++|+|..
T Consensus 68 ~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvigi 104 (273)
T 2oho_A 68 NFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLGV 104 (273)
T ss_dssp HHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEES
T ss_pred HHHHHCCCCEEEEeCchHhHHHHHHHHHhCCCCEEec
Confidence 3444559998887555555445667777789999873
No 180
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=61.04 E-value=33 Score=32.00 Aligned_cols=133 Identities=15% Similarity=0.138 Sum_probs=73.2
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEE--cCCChHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAII--GPQFSVIA 110 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aii--Gp~~s~~~ 110 (574)
.++.+|...+ -+.+.+|+.|+.++ +|..+.+...+++-.--+.++-..+.++. |+.+|+ .+.. ..
T Consensus 38 ~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~~D~iviR~~~~-~~- 105 (304)
T 3r7f_A 38 FAANLFFEPS---TRTRFSFEVAEKKL-------GMNVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIRHSED-EY- 105 (304)
T ss_dssp EEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEEETTSTTSCSSSCHHHHHHHHHHHTCCEEEEECSST-TC-
T ss_pred EEEEEecCCC---hhHHHhHHHHHHHC-------CCeEEEECcccccCCCCCCHHHHHHHHHHhcCCEEEEecCCh-hH-
Confidence 5889997765 37889999999985 45555553333322111222222233333 444443 4433 22
Q ss_pred HHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcC---CeEEEEEEEcCCCCcchHHH
Q 008205 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG---WRNVIALYVDDDHGRNGIAA 184 (574)
Q Consensus 111 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~---W~~v~ii~~~~~~g~~~~~~ 184 (574)
+..++...+||+|.-+.++ ...| .++++|++ +++| -.+|+++. |.........
T Consensus 106 --~~~la~~~~vPVINagdg~-----~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vG--D~~~~rva~S 164 (304)
T 3r7f_A 106 --YEELVSQVNIPILNAGDGC-----GQHP------------TQSLLDLMTIYEEFNTFKGLTVSIHG--DIKHSRVARS 164 (304)
T ss_dssp --HHHHHHHCSSCEEESCCTT-----SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEES--CCTTCHHHHH
T ss_pred --HHHHHHhCCCCEEeCCCCC-----CcCc------------HHHHHHHHHHHHHhCCCCCCEEEEEc--CCCCcchHHH
Confidence 2344566789999742111 1112 36777763 4544 45777775 2211235677
Q ss_pred HHHHHhhcCcEEEEE
Q 008205 185 LGDKLAEKRCRLSHK 199 (574)
Q Consensus 185 l~~~~~~~g~~v~~~ 199 (574)
+...+...|.++...
T Consensus 165 l~~~~~~~G~~v~~~ 179 (304)
T 3r7f_A 165 NAEVLTRLGARVLFS 179 (304)
T ss_dssp HHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCEEEEE
Confidence 777778888876553
No 181
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=60.80 E-value=13 Score=34.33 Aligned_cols=39 Identities=10% Similarity=0.181 Sum_probs=19.4
Q ss_pred CCCCCeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEE
Q 008205 27 STIPPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTV 76 (574)
Q Consensus 27 ~~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~ 76 (574)
+...++|+|.+-..+ ...++...+..++.. |+.++++..
T Consensus 33 ~~~~~~i~i~GSss~--------~p~~~~~a~~f~~~~---p~v~v~~~~ 71 (279)
T 4gd5_A 33 AKSTNSVSISGSTSV--------GPVMEAEAEAFKTKK---PDVSIEINQ 71 (279)
T ss_dssp ----CEEEEEECTTT--------HHHHHHHHHHHHHHS---TTCEEEEEE
T ss_pred ccCCCeEEEEEeCcH--------HHHHHHHHHHHHHHC---CCceEEEee
Confidence 345567888653222 233444455555543 677777754
No 182
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=59.98 E-value=16 Score=35.52 Aligned_cols=95 Identities=13% Similarity=0.063 Sum_probs=61.4
Q ss_pred CceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhh
Q 008205 140 PFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVS 219 (574)
Q Consensus 140 ~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik 219 (574)
|+-+...+... ..+.++++.++ +++.+|++..... ...+.+.+.+++.|+.+.. ..+..+...+++...++.++
T Consensus 10 p~~i~~G~g~~---~~l~~~l~~~g-~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~-~~~~ge~~~~~v~~~~~~~~ 83 (370)
T 1jq5_A 10 PAKYVQGKNVI---TKIANYLEGIG-NKTVVIADEIVWK-IAGHTIVNELKKGNIAAEE-VVFSGEASRNEVERIANIAR 83 (370)
T ss_dssp CSEEEEETTGG---GGHHHHHTTTC-SEEEEEECHHHHH-HTHHHHHHHHHTTTCEEEE-EECCSSCBHHHHHHHHHHHH
T ss_pred CCeEEECcCHH---HHHHHHHHHcC-CeEEEEEChHHHH-HHHHHHHHHHHHcCCeEEE-EeeCCCCCHHHHHHHHHHHH
Confidence 45455554432 33566777788 9999998654322 3568888889888887743 23443344556777888888
Q ss_pred cCCCeEEEEEeC--hHHHHHHHH
Q 008205 220 SMMSRILILHTY--DIWGLEVLN 240 (574)
Q Consensus 220 ~~~~~viil~~~--~~~~~~il~ 240 (574)
+.+.+.||-.+. .-++..++.
T Consensus 84 ~~~~d~IIavGGGsv~D~aK~iA 106 (370)
T 1jq5_A 84 KAEAAIVIGVGGGKTLDTAKAVA 106 (370)
T ss_dssp HTTCSEEEEEESHHHHHHHHHHH
T ss_pred hcCCCEEEEeCChHHHHHHHHHH
Confidence 888998887654 344444443
No 183
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=58.35 E-value=61 Score=29.75 Aligned_cols=38 Identities=11% Similarity=0.129 Sum_probs=25.8
Q ss_pred HHHHhHhcCcEEEEcCCChHHHHHHHHhhccCCccEEe
Q 008205 89 EALTLLENETVAIIGPQFSVIAHLVSHIANEFQVPLLS 126 (574)
Q Consensus 89 ~~~~l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is 126 (574)
.+..+.++|+.+|+-+-.+.++..+..+-..+++|+|.
T Consensus 61 ~~~~L~~~g~d~IViACNTas~~~l~~lr~~~~iPVig 98 (276)
T 2dwu_A 61 MVEFLKQFPLKALVVACNTAAAATLAALQEALSIPVIG 98 (276)
T ss_dssp HHHHHTTSCEEEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHCCCCEEEEeCCcHHHHHHHHHHHHCCCCEEe
Confidence 33344456999988755555545666777778999886
No 184
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=57.03 E-value=53 Score=27.62 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=45.0
Q ss_pred eEEEEEEEcCCCCc---chHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC-CCeEEEEEeC
Q 008205 166 RNVIALYVDDDHGR---NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM-MSRILILHTY 231 (574)
Q Consensus 166 ~~v~ii~~~~~~g~---~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~-~~~viil~~~ 231 (574)
-+++||...++-|. .....+.+.+++.|+.+.....++ .+...+...+++..+. +.++||..+.
T Consensus 11 ~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~--Dd~~~i~~~l~~a~~~~~~DlVittGG 78 (172)
T 1mkz_A 11 TRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVK--ENRYAIRAQVSAWIASDDVQVVLITGG 78 (172)
T ss_dssp CEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEEC--SCHHHHHHHHHHHHHSSSCCEEEEESC
T ss_pred CEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 47888887776553 345678888888898887766665 4556777777776554 5788888643
No 185
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=56.61 E-value=35 Score=31.27 Aligned_cols=38 Identities=11% Similarity=0.199 Sum_probs=26.6
Q ss_pred HHHhHhcCcEEEEcCCChHHHHHHHHhhccCCccEEec
Q 008205 90 ALTLLENETVAIIGPQFSVIAHLVSHIANEFQVPLLSF 127 (574)
Q Consensus 90 ~~~l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~ 127 (574)
+..+.+.|+.+|+=+-.+.++.++..+-..+++|+|..
T Consensus 60 ~~~L~~~g~~~IVIACNTa~~~al~~lr~~~~iPvigi 97 (269)
T 3ist_A 60 TNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGV 97 (269)
T ss_dssp HHHHHHTTCSEEEECCHHHHHHHHHHHHHHCSSCEEES
T ss_pred HHHHHHCCCCEEEEeCCCccHHHHHHHHHhcCCCEEee
Confidence 34445569999887655555545677777889999963
No 186
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=55.62 E-value=33 Score=31.15 Aligned_cols=78 Identities=10% Similarity=0.016 Sum_probs=53.2
Q ss_pred CeEEEEEEEcC--CCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHH
Q 008205 165 WRNVIALYVDD--DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAA 242 (574)
Q Consensus 165 W~~v~ii~~~~--~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a 242 (574)
=+.|+++..+. .+.....+.+++.+++.|+.+..... . .+.......++.+...+.+.||+..... ...++.+
T Consensus 7 s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~l 81 (276)
T 3jy6_A 7 SKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDA-N--ADIEREKTLLRAIGSRGFDGLILQSFSN--PQTVQEI 81 (276)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEEC-T--TCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHHHHH
T ss_pred CcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC-C--CCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHHHHH
Confidence 35788888653 35566778888889999988765431 1 2344455677888888888888876544 5667777
Q ss_pred HHCCC
Q 008205 243 KHLRM 247 (574)
Q Consensus 243 ~~~gm 247 (574)
.+.|+
T Consensus 82 ~~~~i 86 (276)
T 3jy6_A 82 LHQQM 86 (276)
T ss_dssp HTTSS
T ss_pred HHCCC
Confidence 77664
No 187
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=54.91 E-value=35 Score=31.23 Aligned_cols=79 Identities=6% Similarity=-0.096 Sum_probs=54.3
Q ss_pred eEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC-hHHHHHHHHHH
Q 008205 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNAA 242 (574)
Q Consensus 166 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-~~~~~~il~~a 242 (574)
++|+++..+ +.+.....+.+++.+++.|+.+..... ..+.......++.+...+.+.||+... .......++++
T Consensus 6 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 82 (291)
T 3l49_A 6 KTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDA---GRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQKI 82 (291)
T ss_dssp CEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHH
Confidence 578888864 334456678888899999988765432 134444566777777778888887654 35566778888
Q ss_pred HHCCC
Q 008205 243 KHLRM 247 (574)
Q Consensus 243 ~~~gm 247 (574)
.+.|+
T Consensus 83 ~~~~i 87 (291)
T 3l49_A 83 NDAGI 87 (291)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88765
No 188
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=53.55 E-value=93 Score=30.47 Aligned_cols=92 Identities=17% Similarity=-0.004 Sum_probs=58.9
Q ss_pred eEEEEEEEcCCCCc--chHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh------HHHHH
Q 008205 166 RNVIALYVDDDHGR--NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD------IWGLE 237 (574)
Q Consensus 166 ~~v~ii~~~~~~g~--~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~------~~~~~ 237 (574)
++|+|+|. +.||. ..++.+.+.+.+.|+.+....... ....+...++..+. +++.|++.+++ .....
T Consensus 266 ~~v~I~Y~-S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d--~~~~~~s~i~~~i~--~~~~ivlGspT~~~~~~p~~~~ 340 (410)
T 4dik_A 266 GKVTVIYD-SMYGFVENVMKKAIDSLKEKGFTPVVYKFSD--EERPAISEILKDIP--DSEALIFGVSTYEAEIHPLMRF 340 (410)
T ss_dssp TEEEEEEE-CSSSHHHHHHHHHHHHHHHTTCEEEEEEECS--SCCCCHHHHHHHST--TCSEEEEEECCTTSSSCHHHHH
T ss_pred cceeeEEe-cccChHHHHHHHHHHHHHhcCCceEEEEecc--CCCCCHHHHHHHHH--hCCeEEEEeCCcCCcCCHHHHH
Confidence 47999995 44664 356888889999998866543333 23445667777775 45667776654 34556
Q ss_pred HHHHHHHCCCCCCCeEEEEeCcccc
Q 008205 238 VLNAAKHLRMMESGYVWIVTDWLSS 262 (574)
Q Consensus 238 il~~a~~~gm~~~~~~~i~~~~~~~ 262 (574)
++.....+...+..-..+.+..|..
T Consensus 341 ~l~~l~~~~~~~K~~~~FGSyGWsg 365 (410)
T 4dik_A 341 TLLEIIDKANYEKPVLVFGVHGWAP 365 (410)
T ss_dssp HHHHHHHHCCCCCEEEEEEECCCCC
T ss_pred HHHHHHhcccCCCEEEEEECCCCCc
Confidence 6777666665554445566666653
No 189
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=53.49 E-value=1.4e+02 Score=28.32 Aligned_cols=130 Identities=18% Similarity=0.092 Sum_probs=73.3
Q ss_pred EEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC---CCH-HHHHHHHHHhHhcCcEEEEcCCChH
Q 008205 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTN---YSR-FLGMVEALTLLENETVAIIGPQFSV 108 (574)
Q Consensus 33 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~---~~~-~~a~~~~~~l~~~~v~aiiGp~~s~ 108 (574)
=.|+.+|-..+ -+.+.+|+.|+.++ +|..+.+...+++ +.+ ..+++.+..+ . .++++=++. .
T Consensus 46 k~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~-~-D~IviR~~~-~- 111 (335)
T 1dxh_A 46 KNIALIFEKTS---TRTRCAFEVAAYDQ-------GANVTYIDPNSSQIGHKESMKDTARVLGRM-Y-DAIEYRGFK-Q- 111 (335)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECTTTCCBTTTBCHHHHHHHHHHH-C-SEEEEECSC-H-
T ss_pred CEEEEEecCCC---cchHHHHHHHHHHc-------CCeEEEECCccccCcCCCcHHHHHHHHHhh-C-CEEEEecCC-h-
Confidence 36899997765 47899999999985 3443333222221 222 2233333233 1 344444543 2
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcC--C--eEEEEEEEcCCCCcch
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG--W--RNVIALYVDDDHGRNG 181 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~--W--~~v~ii~~~~~~g~~~ 181 (574)
..+..++...+||+|.- .+ +...| .++++|++ +++| . .+++++. |.. ...
T Consensus 112 --~~~~~lA~~s~vPVINa-~~-----~~~HP------------tQ~LaDl~Ti~e~~g~~l~gl~va~vG--D~~-~~v 168 (335)
T 1dxh_A 112 --EIVEELAKFAGVPVFNG-LT-----DEYHP------------TQMLADVLTMREHSDKPLHDISYAYLG--DAR-NNM 168 (335)
T ss_dssp --HHHHHHHHHSSSCEEEE-EC-----SSCCH------------HHHHHHHHHHHHTCSSCGGGCEEEEES--CCS-SHH
T ss_pred --hHHHHHHHhCCCCEEcC-CC-----CCCCc------------HHHHHHHHHHHHHcCCCcCCeEEEEec--CCc-cch
Confidence 23455566678999983 22 11222 36788864 5566 2 3566664 322 356
Q ss_pred HHHHHHHHhhcCcEEEEE
Q 008205 182 IAALGDKLAEKRCRLSHK 199 (574)
Q Consensus 182 ~~~l~~~~~~~g~~v~~~ 199 (574)
...+...+...|.++...
T Consensus 169 a~Sl~~~~~~~G~~v~~~ 186 (335)
T 1dxh_A 169 GNSLLLIGAKLGMDVRIA 186 (335)
T ss_dssp HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHcCCEEEEE
Confidence 677778888889877654
No 190
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=53.36 E-value=40 Score=31.80 Aligned_cols=84 Identities=7% Similarity=-0.123 Sum_probs=53.8
Q ss_pred HHcCCeEEEEEEEc----CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHH
Q 008205 161 DYFGWRNVIALYVD----DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGL 236 (574)
Q Consensus 161 ~~~~W~~v~ii~~~----~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~ 236 (574)
+.-+=+.++++..+ +++.....+.+.+.+++.|+.+..... ..+.......++.+...+.+.||+........
T Consensus 57 ~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~ 133 (338)
T 3dbi_A 57 SAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADG---KHSAEEERQAIQYLLDLRCDAIMIYPRFLSVD 133 (338)
T ss_dssp ---CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEEC---TTSHHHHHHHHHHHHHTTCSEEEECCSSSCHH
T ss_pred hhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHhCCCCEEEEeCCCCChH
Confidence 33345689998866 345556778888899999998765431 12344445677778778888888875433334
Q ss_pred HHHHHHHHCCC
Q 008205 237 EVLNAAKHLRM 247 (574)
Q Consensus 237 ~il~~a~~~gm 247 (574)
.+...+.+.+.
T Consensus 134 ~~~~~~~~~~i 144 (338)
T 3dbi_A 134 EIDDIIDAHSQ 144 (338)
T ss_dssp HHHHHHHHCSS
T ss_pred HHHHHHHcCCC
Confidence 45666666553
No 191
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=53.29 E-value=1.3e+02 Score=27.23 Aligned_cols=117 Identities=18% Similarity=0.122 Sum_probs=68.5
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc--CcEEEEcCCChHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN--ETVAIIGPQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~--~v~aiiGp~~s~~~~ 111 (574)
+||.+..........-..+++.|+++.+- .... .+.....+...+.+.+.+++.. .+.||+...... +.
T Consensus 128 ~I~~i~~~~~~~~~~R~~Gf~~al~~~g~------~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~-A~ 198 (289)
T 3k9c_A 128 NIAHIDGADAPGGADRRAGFLAAMDRHGL------SASA--TVVTGGTTETEGAEGMHTLLEMPTPPTAVVAFNDRC-AT 198 (289)
T ss_dssp SEEEECCTTSTTHHHHHHHHHHHHHHTTC------GGGE--EEECCCSSHHHHHHHHHHHHTSSSCCSEEEESSHHH-HH
T ss_pred cEEEEeCCCCccHHHHHHHHHHHHHHCCC------CCCc--cEEECCCCHHHHHHHHHHHHcCCCCCCEEEECChHH-HH
Confidence 57877655433344567888888877421 1112 2333445677777778888875 688999755443 33
Q ss_pred HHHHhhccC--Ccc----EEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHH
Q 008205 112 LVSHIANEF--QVP----LLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVD 161 (574)
Q Consensus 112 ~va~~~~~~--~iP----~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~ 161 (574)
.+...+.+. .|| ++++... .+.....|-+..+..+...++...++++.
T Consensus 199 g~~~al~~~g~~vP~di~vig~D~~--~~~~~~~p~lttv~~~~~~~g~~a~~~l~ 252 (289)
T 3k9c_A 199 GVLDLLVRSGRDVPADISVVGYDDS--RLARIPHVQMTTISQDATHMAEAAVDGAL 252 (289)
T ss_dssp HHHHHHHHTTCCTTTTCEEEEEECC--TTTTCTTTCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCceEEEEECCH--HHHhcCCCCcceEecCHHHHHHHHHHHHH
Confidence 344444443 334 6765433 23332335566677777778887777653
No 192
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=52.78 E-value=28 Score=32.19 Aligned_cols=80 Identities=8% Similarity=0.015 Sum_probs=53.2
Q ss_pred eEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe-ChHHHHHHHHHH
Q 008205 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT-YDIWGLEVLNAA 242 (574)
Q Consensus 166 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~-~~~~~~~il~~a 242 (574)
++++++..+ +++.....+.+++.+++.|+.+.... ....+.......++.+...+.+.||+.. ........++++
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 82 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRG--AAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTINKA 82 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEE--CSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHHH
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeC--CCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHH
Confidence 567888755 34556677888888889998876532 2123445556677777777888888764 334345677778
Q ss_pred HHCCC
Q 008205 243 KHLRM 247 (574)
Q Consensus 243 ~~~gm 247 (574)
.+.|+
T Consensus 83 ~~~~i 87 (305)
T 3g1w_A 83 VDAGI 87 (305)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77764
No 193
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=51.94 E-value=48 Score=30.30 Aligned_cols=79 Identities=11% Similarity=-0.024 Sum_probs=55.0
Q ss_pred eEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChH----HHHHHH
Q 008205 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI----WGLEVL 239 (574)
Q Consensus 166 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~----~~~~il 239 (574)
+.|+++..+ +.+.....+.+++.+++.|+.+..... . .+.......++.+...+.+.||+..... .....+
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 92 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTST-N--NNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYY 92 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEEC-T--TCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC-C--CChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHH
Confidence 789999865 356667788999999999998765432 1 2444456677888788888888865321 344567
Q ss_pred HHHHHCCC
Q 008205 240 NAAKHLRM 247 (574)
Q Consensus 240 ~~a~~~gm 247 (574)
+++.+.|+
T Consensus 93 ~~~~~~~i 100 (298)
T 3tb6_A 93 LNLEKNGI 100 (298)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 77777664
No 194
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=51.36 E-value=1.1e+02 Score=28.15 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=25.4
Q ss_pred HHHhHhcCcEEEEcCCChHHHHHHHHhhccCCccEEec
Q 008205 90 ALTLLENETVAIIGPQFSVIAHLVSHIANEFQVPLLSF 127 (574)
Q Consensus 90 ~~~l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~ 127 (574)
+..+.+.|+.+|+-+-.+.++..+..+-...++|+|..
T Consensus 77 ~~~L~~~g~d~IVIaCNTas~~~l~~lr~~~~iPVigi 114 (286)
T 2jfq_A 77 ARKLMEFDIKMLVIACNTATAVALEYLQKTLSISVIGV 114 (286)
T ss_dssp HHHHTTSCCSEEEECCHHHHHHHHHHHHHHCSSEEEES
T ss_pred HHHHHHCCCCEEEEeCCchhHHHHHHHHHhCCCCEEec
Confidence 33444559998887555555445666667789999974
No 195
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=51.16 E-value=89 Score=28.85 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=26.7
Q ss_pred HHHHhHhcCcEEEEcCCChHHHHHHHHhhccCCccEEec
Q 008205 89 EALTLLENETVAIIGPQFSVIAHLVSHIANEFQVPLLSF 127 (574)
Q Consensus 89 ~~~~l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~ 127 (574)
.+..+.++|+.+|+-+-.+.++..+..+-+..+||+|..
T Consensus 78 ~~~~L~~~g~d~IVIACNTas~~~l~~lr~~~~iPVigi 116 (290)
T 2vvt_A 78 MADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVGV 116 (290)
T ss_dssp HHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEES
T ss_pred HHHHHHHCCCCEEEEeCcchhHHHHHHHHHhCCCCEEcc
Confidence 334455569999887555555455667777889999973
No 196
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=51.05 E-value=23 Score=34.09 Aligned_cols=75 Identities=9% Similarity=0.042 Sum_probs=51.6
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD 232 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~ 232 (574)
..+.++++.+|.+++.+|++.... ...+.+.+.+++.++.+ + ....++.+.+...+.++.+++.+.+.||-.+..
T Consensus 25 ~~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~~-f-~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 99 (358)
T 3jzd_A 25 SQVAAEVERLGAKRALVLCTPNQQ--AEAERIADLLGPLSAGV-Y-AGAVMHVPIESARDATARAREAGADCAVAVGGG 99 (358)
T ss_dssp GGHHHHHHHTTCSCEEEECCGGGH--HHHHHHHHHHGGGEEEE-E-CCCCTTCBHHHHHHHHHHHHHHTCSEEEEEESH
T ss_pred HHHHHHHHHhCCCeEEEEeCCcHH--HHHHHHHHHhccCCEEE-e-cCCcCCCCHHHHHHHHHHhhccCCCEEEEeCCc
Confidence 446778889999999999865533 34677888887765332 2 223333455677778888888889988887654
No 197
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=50.80 E-value=33 Score=32.88 Aligned_cols=86 Identities=9% Similarity=0.066 Sum_probs=56.9
Q ss_pred CceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhh
Q 008205 140 PFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVS 219 (574)
Q Consensus 140 ~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik 219 (574)
|.-+...+... ..+.++++.+|.+++.+|++.... ...+.+.+.+++.++.+ ...+.++.+.+...+.++.++
T Consensus 12 p~~i~~G~g~~---~~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~v--~~~v~~~p~~~~v~~~~~~~~ 84 (353)
T 3hl0_A 12 PARIVFSAGSS---ADVAEEIRRLGLSRALVLSTPQQK--GDAEALASRLGRLAAGV--FSEAAMHTPVEVTKTAVEAYR 84 (353)
T ss_dssp CCCEEECTTGG---GGHHHHHHHTTCCCEEEECCGGGH--HHHHHHHHHHGGGEEEE--ECCCCTTCBHHHHHHHHHHHH
T ss_pred CceEEECcCHH---HHHHHHHHHhCCCEEEEEecCchh--hHHHHHHHHHhhCCcEE--ecCcCCCCcHHHHHHHHHHHh
Confidence 33344444332 346778888999999999865432 35678888888765433 222333445567788888888
Q ss_pred cCCCeEEEEEeCh
Q 008205 220 SMMSRILILHTYD 232 (574)
Q Consensus 220 ~~~~~viil~~~~ 232 (574)
+.+.+.||-.+.+
T Consensus 85 ~~~~D~IIavGGG 97 (353)
T 3hl0_A 85 AAGADCVVSLGGG 97 (353)
T ss_dssp HTTCSEEEEEESH
T ss_pred ccCCCEEEEeCCc
Confidence 8899988887554
No 198
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=50.51 E-value=1.4e+02 Score=26.72 Aligned_cols=85 Identities=14% Similarity=0.074 Sum_probs=45.6
Q ss_pred EEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-------CHHHHH----HHHHHhHhcCcEEE
Q 008205 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNY-------SRFLGM----VEALTLLENETVAI 101 (574)
Q Consensus 33 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~-------~~~~a~----~~~~~l~~~~v~ai 101 (574)
.+|.+|-|-++ ..+-..+..+++.+. + |+.++.....+.+. +...+. +.+.++..+|+.+|
T Consensus 2 mrilvINPnts---~~~T~~i~~~~~~~~--~---p~~~i~~~t~~~gp~~i~~~~d~~~a~~~l~~~~~~l~~~g~d~i 73 (245)
T 3qvl_A 2 VRIQVINPNTS---LAMTETIGAAARAVA--A---PGTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAGREQGVDGH 73 (245)
T ss_dssp EEEEEECSSCC---HHHHHHHHHHHHHHC--C---TTEEEEEECCSSSCSSCCSHHHHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred CEEEEEeCCCC---HHHHHHHHHHHHHhc--C---CCCEEEEEeCCCCchhhcChhHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 57888888775 344455565555543 2 56777766554432 122222 22223334588887
Q ss_pred EcCCChHHHHHHHHhhccCCccEEec
Q 008205 102 IGPQFSVIAHLVSHIANEFQVPLLSF 127 (574)
Q Consensus 102 iGp~~s~~~~~va~~~~~~~iP~Is~ 127 (574)
+=+-.+... +..+-...++|+|..
T Consensus 74 viaCnt~~~--l~~lr~~~~iPvigi 97 (245)
T 3qvl_A 74 VIASFGDPG--LLAARELAQGPVIGI 97 (245)
T ss_dssp EEC-CCCTT--HHHHHHHCSSCEEEH
T ss_pred EEeCCChhH--HHHHHHHcCCCEECc
Confidence 754333332 244445678898863
No 199
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=50.48 E-value=40 Score=30.79 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=52.9
Q ss_pred CeEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe-ChHHHHHHHHH
Q 008205 165 WRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT-YDIWGLEVLNA 241 (574)
Q Consensus 165 W~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~-~~~~~~~il~~ 241 (574)
=++|+++..+ +++.....+.+++.+++.|+.+..... ..+.......++.+...+.+.||+.. ........+++
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~ 84 (293)
T 3l6u_A 8 RNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATS---QNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEE 84 (293)
T ss_dssp -CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC---SSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHH
T ss_pred CcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECC---CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHH
Confidence 3578888765 334556678888888899988765432 13444456677777778888888864 34444466777
Q ss_pred HHHCCC
Q 008205 242 AKHLRM 247 (574)
Q Consensus 242 a~~~gm 247 (574)
+.+.|+
T Consensus 85 ~~~~~i 90 (293)
T 3l6u_A 85 AKKAGI 90 (293)
T ss_dssp HHHTTC
T ss_pred HHHcCC
Confidence 777664
No 200
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=50.10 E-value=46 Score=30.60 Aligned_cols=78 Identities=6% Similarity=0.010 Sum_probs=53.2
Q ss_pred eEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe-ChHHHHHHHHHH
Q 008205 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT-YDIWGLEVLNAA 242 (574)
Q Consensus 166 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~-~~~~~~~il~~a 242 (574)
.+++++..+ +++.....+.+++.+++.|+.+..... .+.......++.+...+.+.||+.. +.......++++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~ 78 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV----PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKA 78 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEEC----CSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC----CCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHH
Confidence 367888755 345566778888888889988764322 2444556677777777888888875 344556677888
Q ss_pred HHCCC
Q 008205 243 KHLRM 247 (574)
Q Consensus 243 ~~~gm 247 (574)
.+.|+
T Consensus 79 ~~~~i 83 (306)
T 8abp_A 79 RGYDM 83 (306)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 87664
No 201
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=49.97 E-value=1.7e+02 Score=27.59 Aligned_cols=132 Identities=18% Similarity=0.176 Sum_probs=73.6
Q ss_pred EEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc--CcEEEEcCCChHHH
Q 008205 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN--ETVAIIGPQFSVIA 110 (574)
Q Consensus 33 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~--~v~aiiGp~~s~~~ 110 (574)
-.|+.+|-..+ -+.+.+|+.|+.++ +|..+.+...+++-.--+.++-..+.++. .++++=++. ..
T Consensus 45 k~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~-~~-- 111 (333)
T 1duv_G 45 KNIALIFEKDS---TRTRCSFEVAAYDQ-------GARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYG-QE-- 111 (333)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEECSSSSCBTTTBCHHHHHHHHTTTCSEEEEECSC-HH--
T ss_pred CEEEEEecCCC---ccHHHHHHHHHHHc-------CCeEEEECCccccCcCCCcHHHHHHHHHHhCCEEEEEcCC-ch--
Confidence 36899997765 37899999999985 44444443223222112223333344444 333343443 22
Q ss_pred HHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HH-cC--C--eEEEEEEEcCCCCcchH
Q 008205 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DY-FG--W--RNVIALYVDDDHGRNGI 182 (574)
Q Consensus 111 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~-~~--W--~~v~ii~~~~~~g~~~~ 182 (574)
.+..++...+||+|.- .+ +...| .++++|++ ++ +| + .+++++. |.. ....
T Consensus 112 -~~~~lA~~~~vPVINa-~~-----~~~HP------------tQ~LaDl~Ti~e~~~g~~l~gl~ia~vG--D~~-~~va 169 (333)
T 1duv_G 112 -IVETLAEYASVPVWNG-LT-----NEFHP------------TQLLADLLTMQEHLPGKAFNEMTLVYAG--DAR-NNMG 169 (333)
T ss_dssp -HHHHHHHHHSSCEEES-CC-----SSCCH------------HHHHHHHHHHHHHSTTCCGGGCEEEEES--CTT-SHHH
T ss_pred -HHHHHHHhCCCCeEcC-CC-----CCCCc------------hHHHHHHHHHHHHhcCCCCCCcEEEEEC--CCc-cchH
Confidence 2344455568999983 22 21222 36777763 56 66 2 3566664 322 3466
Q ss_pred HHHHHHHhhcCcEEEEE
Q 008205 183 AALGDKLAEKRCRLSHK 199 (574)
Q Consensus 183 ~~l~~~~~~~g~~v~~~ 199 (574)
..+...+...|..+...
T Consensus 170 ~Sl~~~~~~~G~~v~~~ 186 (333)
T 1duv_G 170 NSMLEAAALTGLDLRLV 186 (333)
T ss_dssp HHHHHHHHHHCCEEEEE
T ss_pred HHHHHHHHHcCCEEEEE
Confidence 77777777788877654
No 202
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=49.90 E-value=75 Score=29.14 Aligned_cols=124 Identities=9% Similarity=0.010 Sum_probs=67.8
Q ss_pred CCeEEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc----CcEEEEcC
Q 008205 30 PPVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN----ETVAIIGP 104 (574)
Q Consensus 30 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~----~v~aiiGp 104 (574)
.+..+|+++.... ......-..+++-++++.+ + ..+... +.....+...+.+.+.+++.. .+.+|+..
T Consensus 138 ~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g----~--~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~ 210 (309)
T 2fvy_A 138 DGQIQFVLLKGEPGHPDAEARTTYVIKELNDKG----I--KTEQLQ-LDTAMWDTAQAKDKMDAWLSGPNANKIEVVIAN 210 (309)
T ss_dssp SSSEEEEEEECSTTCHHHHHHHHHHHHHHHHTT----C--CEEEEE-EEECTTCHHHHHHHHHHHHTSTTGGGCCEEEES
T ss_pred CCceEEEEEEcCCCCccHHHHHHHHHHHHHhcC----C--ceEEEE-EecCCCCHHHHHHHHHHHHHhCCCCCccEEEEC
Confidence 4567899887543 2233455778888887631 1 122222 223344666777777888875 58899986
Q ss_pred CChHHHHHHHHhhcc--C-CccEEecccCCCCcCC-CCCCceEEecCChHHHHHHHHHHHH
Q 008205 105 QFSVIAHLVSHIANE--F-QVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVD 161 (574)
Q Consensus 105 ~~s~~~~~va~~~~~--~-~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~ll~ 161 (574)
....... +...+.. . +|+++++........- ...|.+..+..+...++...++++.
T Consensus 211 ~d~~a~g-~~~al~~~g~~di~vig~d~~~~~~~~~~~g~~lttv~~~~~~~g~~a~~~l~ 270 (309)
T 2fvy_A 211 NDAMAMG-AVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAK 270 (309)
T ss_dssp SHHHHHH-HHHHHHHTTCTTSCEECSBCCHHHHHHHHHTSSCBEEECCHHHHHHHHHHHHH
T ss_pred CchhHHH-HHHHHHHcCCCCceEEecCCCHHHHHHHHcCCceEEEecCHHHHHHHHHHHHH
Confidence 5443333 3333332 3 6888876433211100 0013344455556667777776543
No 203
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=49.90 E-value=41 Score=31.44 Aligned_cols=79 Identities=9% Similarity=0.037 Sum_probs=53.5
Q ss_pred eEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC-hHHHHHHHHHH
Q 008205 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNAA 242 (574)
Q Consensus 166 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-~~~~~~il~~a 242 (574)
++|+++..+ +++.....+.+++.+++.|+.+..... ..+.......++.+...+.+.||+... .......++++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (330)
T 3uug_A 4 GSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYA---DDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQA 80 (330)
T ss_dssp CEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHH
T ss_pred cEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeC---CCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHH
Confidence 578888865 355666778888899999988765431 124444556677776677888887643 33456677778
Q ss_pred HHCCC
Q 008205 243 KHLRM 247 (574)
Q Consensus 243 ~~~gm 247 (574)
.+.|+
T Consensus 81 ~~~gi 85 (330)
T 3uug_A 81 GEQGI 85 (330)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77664
No 204
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=48.73 E-value=1.5e+02 Score=27.60 Aligned_cols=131 Identities=19% Similarity=0.206 Sum_probs=75.7
Q ss_pred EEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc--CcEEEEcCCChHHH
Q 008205 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN--ETVAIIGPQFSVIA 110 (574)
Q Consensus 33 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~--~v~aiiGp~~s~~~ 110 (574)
-.++.+|-..+ -+.+.+|+.|+.++ +|..+.+...+++-.--+.++-..+.++. .++++=.+. ..
T Consensus 46 k~~~~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~-~~-- 112 (301)
T 2ef0_A 46 KVLALLFEKPS---LRTRTTLEVAMVHL-------GGHAVYLDQKQVGIGEREPVRDVAKNLERFVEGIAARVFR-HE-- 112 (301)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEEEGGGSCTTTCCCHHHHHHHHTTTCSEEEEECSS-HH--
T ss_pred CEEEEEeccCC---cchHHHHHHHHHHc-------CCeEEEECCcccccCCCCchHHHHHHHHHhCCEEEEecCC-hH--
Confidence 46888987765 47899999999985 45555554444332222233333344444 333333432 22
Q ss_pred HHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcC---CeEEEEEEEcCCCCcchHHH
Q 008205 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG---WRNVIALYVDDDHGRNGIAA 184 (574)
Q Consensus 111 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~---W~~v~ii~~~~~~g~~~~~~ 184 (574)
.+..++...++|+|.- .++ ...| .++++|++ +++| -.+++++.+- ......
T Consensus 113 -~~~~la~~~~vPVINa-~~~-----~~HP------------tQaLaDl~Ti~e~~g~l~gl~ia~vGD~----~rva~S 169 (301)
T 2ef0_A 113 -TVEALARHAKVPVVNA-LSD-----RAHP------------LQALADLLTLKEVFGGLAGLEVAWVGDG----NNVLNS 169 (301)
T ss_dssp -HHHHHHHHCSSCEEEE-ECS-----SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESCC----CHHHHH
T ss_pred -HHHHHHHHCCCCEEeC-CCC-----ccCc------------hHHHHHHHHHHHHhCCcCCcEEEEECCC----chhHHH
Confidence 3445566678999983 221 1222 36777764 4554 2567776531 346677
Q ss_pred HHHHHhhcCcEEEEE
Q 008205 185 LGDKLAEKRCRLSHK 199 (574)
Q Consensus 185 l~~~~~~~g~~v~~~ 199 (574)
+...+...|.++...
T Consensus 170 l~~~~~~~g~~v~~~ 184 (301)
T 2ef0_A 170 LLEVAPLAGLKVRVA 184 (301)
T ss_dssp HHHHHHHHTCEEEEE
T ss_pred HHHHHHHcCCEEEEE
Confidence 777787888877654
No 205
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=48.70 E-value=50 Score=30.30 Aligned_cols=84 Identities=8% Similarity=0.006 Sum_probs=54.6
Q ss_pred CCeEEEEEEEc---CCCCcchHHHHHHHHhhc-CcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh-HHHHHH
Q 008205 164 GWRNVIALYVD---DDHGRNGIAALGDKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEV 238 (574)
Q Consensus 164 ~W~~v~ii~~~---~~~g~~~~~~l~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~-~~~~~i 238 (574)
+=++|+++..+ +.+.....+.+++.+++. |..+..........+.......++.+...+.+.||+.... ......
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~ 86 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGF 86 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHHH
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHHHH
Confidence 34678888765 345566778888888887 7766554322212344555677888888888888887543 344566
Q ss_pred HHHHHHCCC
Q 008205 239 LNAAKHLRM 247 (574)
Q Consensus 239 l~~a~~~gm 247 (574)
++++.+.|+
T Consensus 87 ~~~~~~~~i 95 (304)
T 3gbv_A 87 TDALNELGI 95 (304)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHCCC
Confidence 777777664
No 206
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=48.49 E-value=1.8e+02 Score=27.73 Aligned_cols=131 Identities=17% Similarity=0.199 Sum_probs=72.3
Q ss_pred EEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc--CcEEEEcCCChHHH
Q 008205 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN--ETVAIIGPQFSVIA 110 (574)
Q Consensus 33 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~--~v~aiiGp~~s~~~ 110 (574)
-.|+.+|...+ -+.+.+|+.|+.++ +|..+.+...+++-.--+.++-..+.++. .++++=.+...
T Consensus 67 k~va~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~s~l~kgEsl~DTarvLs~~~D~IviR~~~~~--- 133 (353)
T 3sds_A 67 KTVAMMFSKRS---TRTRVSTEGAVVKM-------GGHPMFLGKDDIQLGVNESLYDTSVVISSMVSCIVARVGPHS--- 133 (353)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECTTTC--CCSSCHHHHHHHHHTSCSEEEEECSSHH---
T ss_pred CEEEEEecCCc---hhHHHHHHHHHHHc-------CCeEEecCCccccccCCccHHHHHHHHHHhcCEEEEEeCChH---
Confidence 46899998876 37889999999985 34333332112211111222222333333 23333343322
Q ss_pred HHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcCC----------------eEEEEE
Q 008205 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFGW----------------RNVIAL 171 (574)
Q Consensus 111 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~W----------------~~v~ii 171 (574)
.+..++...+||+|.-+ ++ .. +| .++++|++ ++||. .+|+++
T Consensus 134 -~~~~lA~~s~vPVINag-~d-----~~-------HP-----tQaLaDl~TI~E~~G~~~~~~~~~~~~~~l~glkva~v 194 (353)
T 3sds_A 134 -DIANLAKHSSVPVINAL-CD-----TF-------HP-----LQAIADFLTIHESFASQSATHGTHPSSLGLEGLKIAWV 194 (353)
T ss_dssp -HHHHHHHHCSSCEEEEE-CS-----SC-------CH-----HHHHHHHHHHHHHTC--------CTTCCSCTTCEEEEE
T ss_pred -HHHHHHhhCCCCEEECC-CC-----CC-------Cc-----HHHHHHHHHHHHHhCCCcccccccccccccCCCEEEEE
Confidence 24566677899999843 22 11 22 36777763 56664 367776
Q ss_pred EEcCCCCcchHHHHHHHHhhcCcEEEEE
Q 008205 172 YVDDDHGRNGIAALGDKLAEKRCRLSHK 199 (574)
Q Consensus 172 ~~~~~~g~~~~~~l~~~~~~~g~~v~~~ 199 (574)
.+- ......+...+...|.++...
T Consensus 195 GD~----~nva~Sl~~~l~~lG~~v~~~ 218 (353)
T 3sds_A 195 GDA----NNVLFDLAIAATKMGVNVAVA 218 (353)
T ss_dssp SCC----CHHHHHHHHHHHHTTCEEEEE
T ss_pred CCC----chHHHHHHHHHHHcCCEEEEE
Confidence 522 246677777888888877654
No 207
>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*
Probab=48.35 E-value=1.5e+02 Score=27.88 Aligned_cols=135 Identities=10% Similarity=0.184 Sum_probs=73.8
Q ss_pred EEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCC------------HHHHHHHHHHhHhc--Cc
Q 008205 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYS------------RFLGMVEALTLLEN--ET 98 (574)
Q Consensus 33 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~------------~~~a~~~~~~l~~~--~v 98 (574)
-.|+.+|-..+ -+.+.+|+.|+.++ +|..+.+...+++-. -.+.++-..+.++. .+
T Consensus 37 k~l~~lF~epS---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~~e~~~g~~m~~~kgEsl~DTarvLs~y~D~ 106 (324)
T 1js1_X 37 KTLLMIFFNSS---LRTRLSTQKAALNL-------GMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDI 106 (324)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEEECCGGGCCEECCSSCCCCSSCCEEHHHHHHHHHHTCSE
T ss_pred CEEEEEecCCC---cchHHHHHHHHHHc-------CCEEEEECCCCCceeeccccccccccCCCCCHHHHHHHHHHhCcE
Confidence 46888987765 37899999999986 344444433322211 11122222333333 33
Q ss_pred EEEEcCCCh------HHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcC---Ce
Q 008205 99 VAIIGPQFS------VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG---WR 166 (574)
Q Consensus 99 ~aiiGp~~s------~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~---W~ 166 (574)
+++=.+.+- .....+..++....||+|.- .++ ...| .++++|++ +++| ++
T Consensus 107 IviR~~~~~~~~~~~~~~~~~~~lA~~~~vPVINa-~~~-----~~HP------------tQaLaDl~Ti~e~~g~~~l~ 168 (324)
T 1js1_X 107 IGVRSFARFENREYDYNEVIINQFIQHSGRPVFSM-EAA-----TRHP------------LQSFADLITIEEYKKTARPK 168 (324)
T ss_dssp EEEECCCCSSCHHHHHHTHHHHHHHHHSSSCEEES-SCS-----SCCH------------HHHHHHHHHHHHHCSSSSCE
T ss_pred EEEecccccccccccccchHHHHHHhhCCCCEEEC-CCC-----CCCc------------HHHHHHHHHHHHHcCCCCee
Confidence 334344110 12234556667778999983 221 1212 36777763 5677 34
Q ss_pred EEEEEE-----EcCCCCcchHHHHHHHHhhcCcEEEEE
Q 008205 167 NVIALY-----VDDDHGRNGIAALGDKLAEKRCRLSHK 199 (574)
Q Consensus 167 ~v~ii~-----~~~~~g~~~~~~l~~~~~~~g~~v~~~ 199 (574)
+.+.+ -.| ......+...+...|.++...
T Consensus 169 -l~ia~a~~~~vGD---~rva~Sl~~~~~~~G~~v~~~ 202 (324)
T 1js1_X 169 -VVMTWAPHPRPLP---QAVPNSFAEWMNATDYEFVIT 202 (324)
T ss_dssp -EEEECCCCSSCCC---SHHHHHHHHHHHTSSSEEEEE
T ss_pred -EEEEEEcccccCC---cchHHHHHHHHHHCCCEEEEe
Confidence 44444 223 346678888888889887654
No 208
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=48.08 E-value=78 Score=28.53 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=62.1
Q ss_pred HHHHHhHhcCcEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeE
Q 008205 88 VEALTLLENETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRN 167 (574)
Q Consensus 88 ~~~~~l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~ 167 (574)
+.+..+.+.|+.+|+-+-.+.++..+..+-...++|+|... . .++...++..+-++
T Consensus 53 ~~~~~L~~~g~d~iviaCnTa~~~~~~~lr~~~~iPvigi~--e----------------------~~~~~A~~~~~~~r 108 (254)
T 1b73_A 53 ECAGFLKDKGVDIIVVACNTASAYALERLKKEINVPVFGVI--E----------------------PGVKEALKKSRNKK 108 (254)
T ss_dssp HHHHHHHTTTCSEEEECCHHHHTTSHHHHHHHSSSCEEESH--H----------------------HHHHHHHHHCSSCE
T ss_pred HHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeee--H----------------------HHHHHHHHccCCCE
Confidence 33444555699988875544443345666667789988731 0 12222233446689
Q ss_pred EEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEee--cCCCC-----Chh----hHHHHHHHhhcCCCeEEEEEeCh
Q 008205 168 VIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVP--LSPKG-----SRN----QIIDTLLTVSSMMSRILILHTYD 232 (574)
Q Consensus 168 v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~--~~~~~-----~~~----~~~~~l~~ik~~~~~viil~~~~ 232 (574)
|+++...... .....++.++..|+.+..... +.... +.. .+...++.+.+. ++.||+.|..
T Consensus 109 igVlaT~~T~---~~~~y~~~l~~~g~~v~~~~~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~IILGCT~ 180 (254)
T 1b73_A 109 IGVIGTPATV---KSGAYQRKLEEGGADVFAKACPLFAPLAEEGLLEGEITRKVVEHYLKEFKGK-IDTLILGCTH 180 (254)
T ss_dssp EEEEECHHHH---HHCHHHHHHHTTSCEEEEEECCCCTTTSCGGGGSGGGHHHHHHHHSTTTTTT-CSEEEECCCC
T ss_pred EEEEEChHHh---hhHHHHHHHHcCCCEEEecCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEECccC
Confidence 9999755421 112345555667777642211 11000 111 233344445545 8999998864
No 209
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=47.98 E-value=42 Score=31.85 Aligned_cols=79 Identities=8% Similarity=-0.015 Sum_probs=51.2
Q ss_pred eEEEEEEEcC---CCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEEeChHHHHHHHH
Q 008205 166 RNVIALYVDD---DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLN 240 (574)
Q Consensus 166 ~~v~ii~~~~---~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~--~~~~viil~~~~~~~~~il~ 240 (574)
.+|+++..+. +|.....+.+++.+++.|+.+..... ..+.......++.+.. .+.+.||+.........+++
T Consensus 4 ~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~ 80 (350)
T 3h75_A 4 TSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYA---ERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQILR 80 (350)
T ss_dssp CEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHH
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEEC---CCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHH
Confidence 5788888653 45566777888888888887765421 1233334455666555 47888888754455666777
Q ss_pred HHHHCCC
Q 008205 241 AAKHLRM 247 (574)
Q Consensus 241 ~a~~~gm 247 (574)
.+.+.|+
T Consensus 81 ~~~~~gi 87 (350)
T 3h75_A 81 LSQGSGI 87 (350)
T ss_dssp HHTTSCC
T ss_pred HHHhCCC
Confidence 7777664
No 210
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=47.44 E-value=22 Score=32.22 Aligned_cols=79 Identities=6% Similarity=-0.101 Sum_probs=49.6
Q ss_pred eEEEEEEEcC--CCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHH
Q 008205 166 RNVIALYVDD--DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAK 243 (574)
Q Consensus 166 ~~v~ii~~~~--~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~ 243 (574)
+.++++..+. ++.....+.+++.+++.|+.+..... ..+.......++.+...+.+.||+..........++++.
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASS---DDQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRELQ 79 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHH
Confidence 4677777553 35556677888888888887765431 123444556677777778888887643312244566666
Q ss_pred HCCC
Q 008205 244 HLRM 247 (574)
Q Consensus 244 ~~gm 247 (574)
+.|+
T Consensus 80 ~~~i 83 (272)
T 3o74_A 80 DKGL 83 (272)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 6654
No 211
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=47.05 E-value=65 Score=32.12 Aligned_cols=144 Identities=9% Similarity=0.033 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHhHhcCcEEEE-cC-CCh---H----HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHH
Q 008205 82 SRFLGMVEALTLLENETVAII-GP-QFS---V----IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQ 152 (574)
Q Consensus 82 ~~~~a~~~~~~l~~~~v~aii-Gp-~~s---~----~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~ 152 (574)
.+..+...+.+.+..|+-+++ -+ ..+ . ....+..++...++.+|.+.|.- +-+.....-....|..
T Consensus 73 p~~~~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~viGPnc~G--v~~~~~~~~~~~~~~~--- 147 (457)
T 2csu_A 73 PKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIGPNCVG--IMNTHVDLNATFITVA--- 147 (457)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEECSSCCE--EEEGGGTEEEESSCCC---
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCEEEcCCcce--EEccCCCceeeecCCC---
Confidence 456666677777777776544 22 111 1 25667788899999999876542 2221101112223321
Q ss_pred HHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc-CCCeEEEEEeC
Q 008205 153 MAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-MMSRILILHTY 231 (574)
Q Consensus 153 ~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~-~~~~viil~~~ 231 (574)
.. -++++|.++.. ....+.+.+.+.|+-++....+-.. ...++.+.|+.+.+ .++++|+++..
T Consensus 148 ---------~~--G~v~~vsqSG~----~~~~~~~~~~~~g~G~s~~vs~G~~-~~~~~~d~l~~~~~D~~t~~I~l~~E 211 (457)
T 2csu_A 148 ---------KK--GNVAFISQSGA----LGAGIVYKTIKEDIGFSKFISVGNM-ADVDFAELMEYLADTEEDKAIALYIE 211 (457)
T ss_dssp ---------EE--CSEEEEESCHH----HHHHHHHHHHHTTCEESEEEECTTC-CSSCHHHHHHHHTTCSSCCEEEEEES
T ss_pred ---------CC--CCEEEEeCCHH----HHHHHHHHHHhcCCCeeEEEECCCc-CCCCHHHHHHHHhcCCCCCEEEEEEe
Confidence 11 46899975543 4566777788888877665555433 34567888888754 58999999988
Q ss_pred h-HHHHHHHHHHHHCC
Q 008205 232 D-IWGLEVLNAAKHLR 246 (574)
Q Consensus 232 ~-~~~~~il~~a~~~g 246 (574)
. .+.+.+++.|+...
T Consensus 212 ~i~~~~~f~~~a~~~~ 227 (457)
T 2csu_A 212 GVRNGKKFMEVAKRVT 227 (457)
T ss_dssp CCSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhc
Confidence 7 66777888777653
No 212
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=46.64 E-value=1.9e+02 Score=27.19 Aligned_cols=131 Identities=16% Similarity=0.125 Sum_probs=71.7
Q ss_pred EEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEE--EEEecCCCCHHHHHHHHHHhHhcCcEEEE--cCCChH
Q 008205 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLK--LTVHDTNYSRFLGMVEALTLLENETVAII--GPQFSV 108 (574)
Q Consensus 33 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~--~~~~d~~~~~~~a~~~~~~l~~~~v~aii--Gp~~s~ 108 (574)
=.|+.+|...+ -+.+.+|+.|+.++ +|..+. +.. +++-.--+.++-..+.++.-+.+|+ .+..
T Consensus 45 k~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~~~l~~-~ss~~kgEsl~DTarvls~~~D~iviR~~~~-- 111 (328)
T 3grf_A 45 KTLLAFFAKPS---LRTRVSLETAMTRL-------GGHAIYYELGA-NSNVGGKETVQDTAEVFSRMVDICTARLATK-- 111 (328)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHH-------TCEEEEEEC-----------CHHHHHHHHTTTCSEEEEECSSH--
T ss_pred CEEEEEecCCC---chHHHHHHHHHHHC-------CCeEEccccCc-cccCCCCCCHHHHHHHHHhhCCEEEEecCCh--
Confidence 36889997765 47889999999987 344444 333 3322222233333444555334433 3322
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcC----------CeEEEEEEEcC
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG----------WRNVIALYVDD 175 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~----------W~~v~ii~~~~ 175 (574)
..+..++...+||+|.-+ ++ .. +| .++++|++ +++| -.+++++. |
T Consensus 112 --~~~~~lA~~~~vPVINag-~~-----~~-------HP-----tQaLaDl~Ti~e~~g~~~~~~~~l~gl~va~vG--D 169 (328)
T 3grf_A 112 --EMMREMAQHASVPCINAL-DD-----FG-------HP-----LQMVCDFMTIKEKFTAAGEFSNGFKGIKFAYCG--D 169 (328)
T ss_dssp --HHHHHHHHHCSSCEEESS-CS-----SC-------CH-----HHHHHHHHHHHHHHHHTTCCTTTGGGCCEEEES--C
T ss_pred --hHHHHHHHhCCCCEEeCC-CC-----CC-------Cc-----HHHHHHHHHHHHHhCCccccccccCCcEEEEeC--C
Confidence 334556677789999732 21 11 12 26777763 4555 24677775 2
Q ss_pred CCCcchHHHHHHHHhhcCcEEEEE
Q 008205 176 DHGRNGIAALGDKLAEKRCRLSHK 199 (574)
Q Consensus 176 ~~g~~~~~~l~~~~~~~g~~v~~~ 199 (574)
... .....+...+...|.++...
T Consensus 170 ~~~-~va~Sl~~~~~~~G~~v~~~ 192 (328)
T 3grf_A 170 SMN-NVTYDLMRGCALLGMECHVC 192 (328)
T ss_dssp CSS-HHHHHHHHHHHHHTCEEEEE
T ss_pred CCc-chHHHHHHHHHHcCCEEEEE
Confidence 212 46677777777788876653
No 213
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=46.51 E-value=1.9e+02 Score=27.15 Aligned_cols=132 Identities=20% Similarity=0.256 Sum_probs=73.7
Q ss_pred EEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc--CcEEEEcCCChHHH
Q 008205 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN--ETVAIIGPQFSVIA 110 (574)
Q Consensus 33 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~--~v~aiiGp~~s~~~ 110 (574)
-.++.+|-..+ -+.+.+|+.|+.++ +|..+.+...+++-.--+.++-..+.++. .++++=++. ...
T Consensus 59 k~la~lF~epS---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~~-~~~- 126 (325)
T 1vlv_A 59 MTLAMIFEKRS---TRTRLAFETAFAEE-------GGHPIFLSPNDIHLGAKESLEDTARVLGRMVDAIMFRGYK-QET- 126 (325)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECTTTCCTTTSSCHHHHHHHHHTTCSEEEEESSC-HHH-
T ss_pred CEEEEEeccCC---cchHHHHHHHHHHc-------CCeEEEECCccccCCCCcCHHHHHHHHHHhCCEEEEECCC-hHH-
Confidence 46888997765 47899999999985 44444443323221111223333334444 333343443 233
Q ss_pred HHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcC---CeEEEEEEEcCCCCcchHHH
Q 008205 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG---WRNVIALYVDDDHGRNGIAA 184 (574)
Q Consensus 111 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~---W~~v~ii~~~~~~g~~~~~~ 184 (574)
+..++...++|+|.- .++ ...| .++++|++ +++| -.+++++.+ .. ......
T Consensus 127 --~~~lA~~~~vPVINa-~~~-----~~HP------------tQaLaDl~Ti~e~~g~l~gl~va~vGD--~~-~rva~S 183 (325)
T 1vlv_A 127 --VEKLAEYSGVPVYNG-LTD-----EFHP------------TQALADLMTIEENFGRLKGVKVVFMGD--TR-NNVATS 183 (325)
T ss_dssp --HHHHHHHHCSCEEES-CCS-----SCCH------------HHHHHHHHHHHHHHSCSTTCEEEEESC--TT-SHHHHH
T ss_pred --HHHHHHhCCCCEEeC-CCC-----CCCc------------HHHHHHHHHHHHHhCCcCCcEEEEECC--CC-cCcHHH
Confidence 344455557999982 221 1222 36777764 4555 246777753 21 346677
Q ss_pred HHHHHhhcCcEEEEE
Q 008205 185 LGDKLAEKRCRLSHK 199 (574)
Q Consensus 185 l~~~~~~~g~~v~~~ 199 (574)
+...+...|.++...
T Consensus 184 l~~~~~~~G~~v~~~ 198 (325)
T 1vlv_A 184 LMIACAKMGMNFVAC 198 (325)
T ss_dssp HHHHHHHTTCEEEEE
T ss_pred HHHHHHHCCCEEEEE
Confidence 778888889877654
No 214
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=44.91 E-value=1.3e+02 Score=24.85 Aligned_cols=38 Identities=11% Similarity=0.013 Sum_probs=19.3
Q ss_pred hhHHHHHHHhhcCC--CeEEEEEe------ChHHHHHHHHHHHHCC
Q 008205 209 NQIIDTLLTVSSMM--SRILILHT------YDIWGLEVLNAAKHLR 246 (574)
Q Consensus 209 ~~~~~~l~~ik~~~--~~viil~~------~~~~~~~il~~a~~~g 246 (574)
..+..+|+.++... .++||+.- +..+...++....+.|
T Consensus 60 p~l~~ll~~~~~g~~~~d~lvv~~ldRl~R~~~~~~~~~~~l~~~g 105 (167)
T 3guv_A 60 IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLQIMQDYG 105 (167)
T ss_dssp HHHHHHHHHHHTCTTCCSEEEESCGGGTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCccEEEEEeCchhcCCHHHHHHHHHHHHHCC
Confidence 45666666665544 45555431 1234445555555555
No 215
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=44.61 E-value=2e+02 Score=26.91 Aligned_cols=129 Identities=16% Similarity=0.174 Sum_probs=72.8
Q ss_pred EEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC---CCH-HHHHHHHHHhHhcCcEEEEcCCChH
Q 008205 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTN---YSR-FLGMVEALTLLENETVAIIGPQFSV 108 (574)
Q Consensus 33 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~---~~~-~~a~~~~~~l~~~~v~aiiGp~~s~ 108 (574)
-.++.+|-..+ -+.+.+|+.|+.++ +|..+.+...+++ +.+ ..+++.+..+ . .++++=.+. ..
T Consensus 47 k~l~~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~-~-D~iviR~~~-~~ 113 (321)
T 1oth_A 47 KSLGMIFEKRS---TRTRLSTETGFALL-------GGHPCFLTTQDIHLGVNESLTDTARVLSSM-A-DAVLARVYK-QS 113 (321)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEEETTTSCBTTTBCHHHHHHHHHHH-C-SEEEEECSC-HH
T ss_pred CEEEEEecCCC---cchHHHHHHHHHHc-------CCeEEEECCCcCcCCCCCCHHHHHHHHHHh-C-CEEEEeCCC-hh
Confidence 36888987765 37899999999985 4544544433332 222 2223222222 1 344343443 22
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcC---CeEEEEEEEcCCCCcchH
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG---WRNVIALYVDDDHGRNGI 182 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~---W~~v~ii~~~~~~g~~~~ 182 (574)
.+..++...++|+|.- .+ +...| .++++|++ +++| -.+|+++.+ +....
T Consensus 114 ---~~~~lA~~~~vPVINa-~~-----~~~HP------------tQaLaDl~Ti~e~~g~l~gl~va~vGD----~~~va 168 (321)
T 1oth_A 114 ---DLDTLAKEASIPIING-LS-----DLYHP------------IQILADYLTLQEHYSSLKGLTLSWIGD----GNNIL 168 (321)
T ss_dssp ---HHHHHHHHCSSCEEES-CC-----SSCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESC----SSHHH
T ss_pred ---HHHHHHHhCCCCEEcC-CC-----CCCCc------------HHHHHHHHHHHHHhCCcCCcEEEEECC----chhhH
Confidence 3345566678999983 22 11222 36778764 4554 247777653 22466
Q ss_pred HHHHHHHhhcCcEEEEE
Q 008205 183 AALGDKLAEKRCRLSHK 199 (574)
Q Consensus 183 ~~l~~~~~~~g~~v~~~ 199 (574)
..+...+...|.++...
T Consensus 169 ~Sl~~~~~~~G~~v~~~ 185 (321)
T 1oth_A 169 HSIMMSAAKFGMHLQAA 185 (321)
T ss_dssp HHHHTTTGGGTCEEEEE
T ss_pred HHHHHHHHHcCCeEEEE
Confidence 77777777788877654
No 216
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=44.56 E-value=71 Score=29.99 Aligned_cols=81 Identities=7% Similarity=-0.045 Sum_probs=52.8
Q ss_pred cCCeEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHH
Q 008205 163 FGWRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLN 240 (574)
Q Consensus 163 ~~W~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~ 240 (574)
-+-+.++++..+ +++.....+.+++.+.+.|+.+..... ..+.......++.+...+.+.||+...... ...+.
T Consensus 60 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~-~~~~~ 135 (339)
T 3h5o_A 60 AKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNS---HYDAGQELQLLRAYLQHRPDGVLITGLSHA-EPFER 135 (339)
T ss_dssp ---CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHTTCCSEEEEECSCCC-TTHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHcCCCCEEEEeCCCCC-HHHHH
Confidence 344678888865 456677888999999999998765321 124444566778888888888888653322 24556
Q ss_pred HHHHCCC
Q 008205 241 AAKHLRM 247 (574)
Q Consensus 241 ~a~~~gm 247 (574)
.+.+.|+
T Consensus 136 ~l~~~~i 142 (339)
T 3h5o_A 136 ILSQHAL 142 (339)
T ss_dssp HHHHTTC
T ss_pred HHhcCCC
Confidence 6666654
No 217
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=44.48 E-value=1.2e+02 Score=29.00 Aligned_cols=130 Identities=18% Similarity=0.106 Sum_probs=73.6
Q ss_pred EEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC---CCH-HHHHHHHHHhHhcCcEEEEcCCChH
Q 008205 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTN---YSR-FLGMVEALTLLENETVAIIGPQFSV 108 (574)
Q Consensus 33 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~---~~~-~~a~~~~~~l~~~~v~aiiGp~~s~ 108 (574)
-.|+.+|..++ -+.+.+|+.|+.++ ++..+.+...+++ +.+ .-+++.+..+ . .++++=++.. .
T Consensus 72 K~va~lF~e~S---TRTR~SFE~A~~~L-------Gg~vi~l~~~~ss~~kgEsl~DTarvLs~~-~-D~IviR~~~~-~ 138 (365)
T 4amu_A 72 KNIAILFQKDS---TRTRCAFEVAASDL-------GAGVTYIGPSGSNMGKKESIEDTAKVLGRF-Y-DGIEFRGFAQ-S 138 (365)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHH-------TCEEEEECHHHHCCSSSSCHHHHHHHHHHH-C-SEEEEECSCH-H
T ss_pred ceEEEEecCCC---chHHHHHHHHHHhC-------CCEEEEcCCccccCCCCcCHHHHHHHHHhh-C-cEEEEecCCh-h
Confidence 46899998776 37889999999987 3444433222222 222 2233333333 2 3444445433 2
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcC---CeEEEEEEEcCCCCcchH
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG---WRNVIALYVDDDHGRNGI 182 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~---W~~v~ii~~~~~~g~~~~ 182 (574)
.+..++...+||+|.-. ++ .. .| .++++|++ +++| -.+|+++. |.. ....
T Consensus 139 ---~~~~lA~~s~vPVINa~-~~-----~~-------HP-----tQaLaDl~Ti~E~~G~l~glkva~vG-D~~--nnva 194 (365)
T 4amu_A 139 ---DVDALVKYSGVPVWNGL-TD-----DE-------HP-----TQIIADFMTMKEKFGNLKNKKIVFIG-DYK--NNVG 194 (365)
T ss_dssp ---HHHHHHHHHCSCEEEEE-CS-----SC-------CH-----HHHHHHHHHHHHHHSSCTTCEEEEES-STT--SHHH
T ss_pred ---HHHHHHHhCCCCEEeCC-CC-----CC-------Cc-----HHHHHHHHHHHHHhCCCCCCEEEEEC-CCC--cchH
Confidence 33455556689999842 21 11 12 36777763 4555 36777775 221 2356
Q ss_pred HHHHHHHhhcCcEEEEE
Q 008205 183 AALGDKLAEKRCRLSHK 199 (574)
Q Consensus 183 ~~l~~~~~~~g~~v~~~ 199 (574)
..+...+...|..+...
T Consensus 195 ~Sl~~~~~~lG~~v~~~ 211 (365)
T 4amu_A 195 VSTMIGAAFNGMHVVMC 211 (365)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHcCCEEEEE
Confidence 77777888888877653
No 218
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=44.46 E-value=2e+02 Score=27.50 Aligned_cols=129 Identities=16% Similarity=0.052 Sum_probs=72.6
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC---CCH-HHHHHHHHHhHhcCcEEEEcCCChHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTN---YSR-FLGMVEALTLLENETVAIIGPQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~---~~~-~~a~~~~~~l~~~~v~aiiGp~~s~~ 109 (574)
.|+.+|-..+ -+.+.+|+.|+.++ +|..+.+...++. +.+ ..+++.+..+ ..++++=++..
T Consensus 72 ~la~lF~epS---TRTR~SFE~A~~~L-------Gg~vi~l~~~~ss~~kgEsl~DTarvLs~~--~D~IviR~~~~--- 136 (358)
T 4h31_A 72 NIALIFEKAS---TRTRCAFEVAAFDQ-------GAQVTYIGPSGSQIGDKESMKDTARVLGRM--YDGIQYRGFGQ--- 136 (358)
T ss_dssp EEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEECSSSSCBTTTBCHHHHHHHHHHH--CSEEEEECSCH---
T ss_pred EEEEEeCCCC---hhhHHHHHHHHHHc-------CCeEEECCcccccccCccchhHHHHHhhcc--CceeEecccch---
Confidence 5888997765 36899999999885 4444433322322 222 2222222222 13333434332
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcCC-----eEEEEEEEcCCCCcch
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFGW-----RNVIALYVDDDHGRNG 181 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~W-----~~v~ii~~~~~~g~~~ 181 (574)
..+..++....||+|. +-+ +.. +| .++++|++ +++++ .+|+++. |.. ...
T Consensus 137 -~~~~~la~~s~vPVIN-G~g-----~~~-------HP-----tQaL~Dl~Ti~e~~~~~~l~gl~ia~vG--D~~-~~v 194 (358)
T 4h31_A 137 -AIVEELGAFAGVPVWN-GLT-----DEF-------HP-----TQILADFLTMLEHSQGKALADIQFAYLG--DAR-NNV 194 (358)
T ss_dssp -HHHHHHHHHSSSCEEE-SCC-----SSC-------CH-----HHHHHHHHHHHHTTTTCCGGGCEEEEES--CTT-SHH
T ss_pred -hHHHHhhhhccCceEC-CCC-----cCC-------Cc-----hHHHHHHHHHHHHhcCCCcCceEEEecC--CCC-ccc
Confidence 3455667778899997 322 212 22 36888874 35653 3667665 221 246
Q ss_pred HHHHHHHHhhcCcEEEEE
Q 008205 182 IAALGDKLAEKRCRLSHK 199 (574)
Q Consensus 182 ~~~l~~~~~~~g~~v~~~ 199 (574)
...+...+...|..+...
T Consensus 195 a~S~~~~~~~~g~~v~~~ 212 (358)
T 4h31_A 195 GNSLMVGAAKMGMDIRLV 212 (358)
T ss_dssp HHHHHHHHHHHTCEEEEE
T ss_pred chHHHHHHHhcCceEEEe
Confidence 677777888888877654
No 219
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=44.07 E-value=11 Score=33.15 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=25.3
Q ss_pred cEEEEcCCChHHHHHHHHhhccCCccEEec
Q 008205 98 TVAIIGPQFSVIAHLVSHIANEFQVPLLSF 127 (574)
Q Consensus 98 v~aiiGp~~s~~~~~va~~~~~~~iP~Is~ 127 (574)
+..++||..|.=......++..+++|+||.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~ist 31 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIST 31 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcH
Confidence 467899998877667788899999999985
No 220
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=43.78 E-value=1.4e+02 Score=27.11 Aligned_cols=41 Identities=15% Similarity=0.143 Sum_probs=27.9
Q ss_pred HHHHHHhHh-cCcEEEEcCCChHHHHHHHHhhccCCccEEec
Q 008205 87 MVEALTLLE-NETVAIIGPQFSVIAHLVSHIANEFQVPLLSF 127 (574)
Q Consensus 87 ~~~~~~l~~-~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~ 127 (574)
.+.+..+.+ .|+.+|+-+-.+.++..+..+-..+++|+|..
T Consensus 55 ~~~~~~L~~~~g~d~iViACNTas~~~l~~lr~~~~iPVigi 96 (272)
T 1zuw_A 55 WELTNYLLENHHIKMLVIACNTATAIALDDIQRSVGIPVVGV 96 (272)
T ss_dssp HHHHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEES
T ss_pred HHHHHHHHhhcCCCEEEEeCchhhHHHHHHHHHHCCCCEEcc
Confidence 334455666 79998887555555445667777889999973
No 221
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=43.50 E-value=67 Score=29.01 Aligned_cols=116 Identities=16% Similarity=0.072 Sum_probs=65.9
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc--CcEEEEcCCChHHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN--ETVAIIGPQFSVIAH 111 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~--~v~aiiGp~~s~~~~ 111 (574)
+|+++...... ...-..+++.|+++.+- .+...+.....+...+.+.+.+++.. .+.||+...... +.
T Consensus 120 ~i~~i~~~~~~-~~~R~~gf~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~-a~ 189 (280)
T 3gyb_A 120 HIAHLRVGSGA-GLRRFESFEATMRAHGL--------EPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFSSNDIT-AI 189 (280)
T ss_dssp SEEEECCSSHH-HHHHHHHHHHHHHHTTC--------CCEECCCCSCCCHHHHHHHHHHHHHHCTTCCEEEESSHHH-HH
T ss_pred eEEEEeCCCch-HHHHHHHHHHHHHHcCc--------CCCcccccCCCCHHHHHHHHHHHHhCCCCCCEEEECChHH-HH
Confidence 58888766543 45567888888876421 12222244455677777778888876 588999865443 33
Q ss_pred HHHHhhccC------CccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHH
Q 008205 112 LVSHIANEF------QVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVD 161 (574)
Q Consensus 112 ~va~~~~~~------~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~ 161 (574)
.+...+.+. +|.++++.... +.....|-+..+..+...++...++++.
T Consensus 190 g~~~al~~~g~~vP~di~vvg~d~~~--~~~~~~p~lttv~~~~~~~g~~av~~l~ 243 (280)
T 3gyb_A 190 GALGAARELGLRVPEDLSIIGYDNTP--LAQTRLINLTTIDDNSIGVGYNAALLLL 243 (280)
T ss_dssp HHHHHHHHHTCCTTTTCEEEEESCCH--HHHSTTTCCCEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCeeEEEEECCch--HhhccCCCceEEecCHHHHHHHHHHHHH
Confidence 333444333 34467654322 2222234445555666667777776543
No 222
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=43.43 E-value=1.1e+02 Score=27.25 Aligned_cols=93 Identities=8% Similarity=-0.076 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCCeEEEEEEEc------------CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC
Q 008205 154 AAIADIVDYFGWRNVIALYVD------------DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM 221 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~------------~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~ 221 (574)
...++.+...|.+.|=+.... ........+.+++.+++.|+.+....... ......+...++..+..
T Consensus 25 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~-~~~~~~~~~~i~~A~~l 103 (262)
T 3p6l_A 25 TEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVYV-AEKSSDWEKMFKFAKAM 103 (262)
T ss_dssp HHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEEC-CSSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccC-CccHHHHHHHHHHHHHc
Confidence 456677788898888776422 11223457899999999999877654332 23445677788888888
Q ss_pred CCeEEEEEeChHHHHHHHHHHHHCCC
Q 008205 222 MSRILILHTYDIWGLEVLNAAKHLRM 247 (574)
Q Consensus 222 ~~~viil~~~~~~~~~il~~a~~~gm 247 (574)
+++.|++....+....+...|.+.|+
T Consensus 104 Ga~~v~~~~~~~~~~~l~~~a~~~gv 129 (262)
T 3p6l_A 104 DLEFITCEPALSDWDLVEKLSKQYNI 129 (262)
T ss_dssp TCSEEEECCCGGGHHHHHHHHHHHTC
T ss_pred CCCEEEecCCHHHHHHHHHHHHHhCC
Confidence 88888887666666666677766664
No 223
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=43.08 E-value=2.1e+02 Score=26.70 Aligned_cols=131 Identities=19% Similarity=0.204 Sum_probs=76.7
Q ss_pred EEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc--CcEEEEcCCChHHH
Q 008205 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN--ETVAIIGPQFSVIA 110 (574)
Q Consensus 33 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~--~v~aiiGp~~s~~~ 110 (574)
-.++.+|-..+ -+.+.+|+.|+.++ +|..+.+...+++-.--+.++-..+.++. .++++=.+. .
T Consensus 47 k~la~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~-~--- 112 (315)
T 1pvv_A 47 KTLAMIFQKPS---TRTRVSFEVAMAHL-------GGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMARVYD-H--- 112 (315)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT-------TSEEEEEEGGGSTTTTTCCHHHHHHHHTTTCSEEEEECSS-H---
T ss_pred CEEEEEecCCC---cchHHHHHHHHHHc-------CCeEEEECCccccCCCCcCHHHHHHHHHHhCcEEEEecCc-h---
Confidence 36888997765 37899999999985 45555555444432222233333444454 333333432 2
Q ss_pred HHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcC---CeEEEEEEEcCCCCcchHHH
Q 008205 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG---WRNVIALYVDDDHGRNGIAA 184 (574)
Q Consensus 111 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~---W~~v~ii~~~~~~g~~~~~~ 184 (574)
..+..++...++|+|.- .++ ...| .++++|++ +++| -.+++++.+- ......
T Consensus 113 ~~~~~lA~~~~vPVINa-~~~-----~~HP------------tQaLaDl~Ti~e~~g~l~gl~va~vGD~----~rva~S 170 (315)
T 1pvv_A 113 KDVEDLAKYATVPVING-LSD-----FSHP------------CQALADYMTIWEKKGTIKGVKVVYVGDG----NNVAHS 170 (315)
T ss_dssp HHHHHHHHHCSSCEEEE-ECS-----SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESCC----CHHHHH
T ss_pred HHHHHHHHhCCCCEEcC-CCC-----CCCc------------HHHHHHHHHHHHHhCCcCCcEEEEECCC----cchHHH
Confidence 23455566678999983 222 1212 36777764 4554 2467776531 346677
Q ss_pred HHHHHhhcCcEEEEE
Q 008205 185 LGDKLAEKRCRLSHK 199 (574)
Q Consensus 185 l~~~~~~~g~~v~~~ 199 (574)
+...+...|.++...
T Consensus 171 l~~~~~~~g~~v~~~ 185 (315)
T 1pvv_A 171 LMIAGTKLGADVVVA 185 (315)
T ss_dssp HHHHHHHTTCEEEEE
T ss_pred HHHHHHHCCCEEEEE
Confidence 778888889887654
No 224
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=41.48 E-value=41 Score=33.52 Aligned_cols=83 Identities=7% Similarity=-0.007 Sum_probs=54.3
Q ss_pred HHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC--h
Q 008205 155 AIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY--D 232 (574)
Q Consensus 155 ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~--~ 232 (574)
.+.++++.+|-+++.+|++..... ...+.+.+.+++.|+.+.+. .+..+....++....+.+++ +.+.||-.+. .
T Consensus 81 ~l~~~l~~~g~~rvlIVtd~~~~~-~~~~~v~~~L~~~gi~~~~~-~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGGGSv 157 (450)
T 1ta9_A 81 RSYMYVKKWATKSAVVLADQNVWN-ICANKIVDSLSQNGMTVTKL-VFGGEASLVELDKLRKQCPD-DTQVIIGVGGGKT 157 (450)
T ss_dssp GHHHHHTTTCSSEEEEEEEHHHHH-HTHHHHHHHHHHTTCEEEEE-EECSCCCHHHHHHHHTTSCT-TCCEEEEEESHHH
T ss_pred HHHHHHHhcCCCEEEEEECccHHH-HHHHHHHHHHHHCCCeEEEE-eeCCCCCHHHHHHHHHHHhh-CCCEEEEeCCcHH
Confidence 456677778866999999665322 35788888898889876432 24433445567777777777 8888887654 3
Q ss_pred HHHHHHHH
Q 008205 233 IWGLEVLN 240 (574)
Q Consensus 233 ~~~~~il~ 240 (574)
-++..++.
T Consensus 158 iD~AK~iA 165 (450)
T 1ta9_A 158 MDSAKYIA 165 (450)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 225
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=41.15 E-value=93 Score=27.79 Aligned_cols=93 Identities=11% Similarity=-0.013 Sum_probs=63.5
Q ss_pred HHHHHHHHHcCCeEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC
Q 008205 154 AAIADIVDYFGWRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~ 231 (574)
...++.++..|.+.|=+.... ........+.+++.+++.|+.+........ .....+...++..+..+++.|++...
T Consensus 33 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~-~~~~~~~~~i~~A~~lGa~~v~~~p~ 111 (257)
T 3lmz_A 33 DTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYM-KSEEEIDRAFDYAKRVGVKLIVGVPN 111 (257)
T ss_dssp HHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEE-CSHHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred HHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecccc-CCHHHHHHHHHHHHHhCCCEEEecCC
Confidence 556777888898888776431 112334568899999999998765432211 24456777777777778888888766
Q ss_pred hHHHHHHHHHHHHCCC
Q 008205 232 DIWGLEVLNAAKHLRM 247 (574)
Q Consensus 232 ~~~~~~il~~a~~~gm 247 (574)
.+....+...|++.|+
T Consensus 112 ~~~l~~l~~~a~~~gv 127 (257)
T 3lmz_A 112 YELLPYVDKKVKEYDF 127 (257)
T ss_dssp GGGHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 6667777777777665
No 226
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=41.12 E-value=2.1e+02 Score=26.10 Aligned_cols=87 Identities=15% Similarity=-0.038 Sum_probs=59.9
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe---
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT--- 230 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~--- 230 (574)
..++.-....|-.-+.++.+.. +.....+.++..-+..++.|.....+. +. + ++.+.+..+++.|++.+
T Consensus 82 ~~~A~~y~~~GA~~IsVltd~~-~f~Gs~~~L~~ir~~v~lPVl~Kdfi~---d~--~--qi~ea~~~GAD~VlLi~a~L 153 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLTDTP-SFQGAPEFLTAARQACSLPALRKDFLF---DP--Y--QVYEARSWGADCILIIMASV 153 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCST-TTCCCHHHHHHHHHTSSSCEEEESCCC---ST--H--HHHHHHHTTCSEEEEETTTS
T ss_pred HHHHHHHHHCCCCEEEEecccc-ccCCCHHHHHHHHHhcCCCEEECCccC---CH--H--HHHHHHHcCCCEEEEccccc
Confidence 4566667778889999888444 444566666665555677776443221 21 2 56677889999999985
Q ss_pred ChHHHHHHHHHHHHCCCC
Q 008205 231 YDIWGLEVLNAAKHLRMM 248 (574)
Q Consensus 231 ~~~~~~~il~~a~~~gm~ 248 (574)
+......++..+.++||.
T Consensus 154 ~~~~l~~l~~~a~~lGl~ 171 (272)
T 3tsm_A 154 DDDLAKELEDTAFALGMD 171 (272)
T ss_dssp CHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHcCCe
Confidence 346788999999999973
No 227
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=40.61 E-value=13 Score=35.24 Aligned_cols=64 Identities=17% Similarity=0.106 Sum_probs=18.0
Q ss_pred CchhHHHHHHHHHHH-HhhcccccCCC-CCCCCeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEE
Q 008205 1 MTKIYLLALVVVYNF-CFSAGISMNGV-STIPPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTV 76 (574)
Q Consensus 1 M~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~ 76 (574)
|||+.++++++++++ ++++| |+.+. ....++|+|..-- ......++-.++.+++.. |++|++..
T Consensus 4 Mkk~~~~~~~~~~~~~~~lag-C~~~~~~~~~~~l~v~~~~-------~~~~~~~~~~~~~f~~~~----gi~V~~~~ 69 (351)
T 4edp_A 4 MKKKILATLLTGLVLGTSLVG-CGKTEGAEAGKKLVVSTWG-------LNEDVLKETVFEPFAKEH----GVEIVLDI 69 (351)
T ss_dssp ---------------------------------CEEEEECC-------TTHHHHHHHTHHHHHHHH----TCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhe-eCCCCccCCCCeEEEEEcc-------CcHHHHHHHHHHHHHHHH----CCEEEEEe
Confidence 787654333333222 23455 55433 3344667774321 112334455566666654 45677764
No 228
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=40.60 E-value=1.3e+02 Score=27.72 Aligned_cols=35 Identities=9% Similarity=0.145 Sum_probs=24.3
Q ss_pred hHh-cCcEEEEcCCChHHHHHHHHhhccCCccEEec
Q 008205 93 LLE-NETVAIIGPQFSVIAHLVSHIANEFQVPLLSF 127 (574)
Q Consensus 93 l~~-~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~ 127 (574)
++. .|+.+|+-+-.+.++..+..+-...++|+|..
T Consensus 79 ll~~~g~d~IviaCNTas~~~l~~lr~~~~iPVigi 114 (285)
T 2jfn_A 79 VQERYPLALAVVACNTASTVSLPALREKFDFPVVGV 114 (285)
T ss_dssp HHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEECC
T ss_pred HHHhCCCCEEEEECccccHHHHHHHHHhCCCCEEeh
Confidence 444 58988887555555446667777889999973
No 229
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=40.41 E-value=63 Score=29.39 Aligned_cols=79 Identities=4% Similarity=-0.086 Sum_probs=48.7
Q ss_pred eEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC-hHHHHHHHHHH
Q 008205 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNAA 242 (574)
Q Consensus 166 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-~~~~~~il~~a 242 (574)
++++++..+ +++.....+.+++.+++.|+.+..... ..+.......++.+...+.+.||+... .......++++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~ 79 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDS---QNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRA 79 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 367788754 345556677888888888987764321 123334455677776677888877643 33333456666
Q ss_pred HHCCC
Q 008205 243 KHLRM 247 (574)
Q Consensus 243 ~~~gm 247 (574)
.+.|.
T Consensus 80 ~~~~i 84 (290)
T 2fn9_A 80 KEAGI 84 (290)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 66554
No 230
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=40.03 E-value=74 Score=26.53 Aligned_cols=80 Identities=11% Similarity=-0.007 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC
Q 008205 152 QMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (574)
Q Consensus 152 ~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~ 231 (574)
.++.+..+.++++-+++.++- |........+.+.+.....|+++.. + +.++....+++-+..+.++++++-+
T Consensus 14 HGQV~t~W~k~~~~~~IiVvn-D~vA~D~~~k~~lk~a~P~gvk~~i---~----sve~ai~~~~~~~~~~~~v~ll~k~ 85 (164)
T 1nrz_A 14 HGQVTTVWSKVANAQRIIICN-DDVFNDEVRRTLLRQAAPPGMKVNV---V----SLEKAVAVYHNPQYQDETVFYLFTN 85 (164)
T ss_dssp CHHHHHHHHHHHTCSEEEEEC-HHHHTCHHHHHHHHHTCCTTCEEEE---E----CHHHHHHHHTCGGGTTCEEEEEESS
T ss_pred chhheeeeccccCCCEEEEeC-ccccCCHHHHHHHHhcCCCCCeEEE---E----EHHHHHHHHhcccCCCceEEEEECC
Confidence 467788899999999998874 3322334666777777777887653 2 2334445555544567899999999
Q ss_pred hHHHHHHH
Q 008205 232 DIWGLEVL 239 (574)
Q Consensus 232 ~~~~~~il 239 (574)
+.++.++.
T Consensus 86 p~d~~~lv 93 (164)
T 1nrz_A 86 PHDVLTMV 93 (164)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887764
No 231
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=39.91 E-value=1.9e+02 Score=26.11 Aligned_cols=117 Identities=12% Similarity=-0.026 Sum_probs=63.9
Q ss_pred EEEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc--CcEEEEcCCChHH
Q 008205 33 LNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN--ETVAIIGPQFSVI 109 (574)
Q Consensus 33 i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~--~v~aiiGp~~s~~ 109 (574)
-+|+++.... ......-..+++.++++. |.++... ....+...+.+.+.+++.. .+.+|++......
T Consensus 131 ~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~--------g~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A 200 (297)
T 3rot_A 131 KRALVLNPQPGHIGLEKRAYGIKTILQDK--------GIFFEEL--DVGTDPNQVQSRVKSYFKIHPETNIIFCLTSQAL 200 (297)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHT--------TCEEEEE--ECCSCHHHHHHHHHHHHHHCTTCCEEEESSHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHHHhc--------CCeEEEe--ecCCChHHHHHHHHHHHHhCCCCCEEEEcCCcch
Confidence 4688776443 223345578888888774 2344332 2344566677777777765 6889998665443
Q ss_pred HHHHHHhhcc-------CCccEEecccCCCCcCC-CCCCceEEecCChHHHHHHHHHHH
Q 008205 110 AHLVSHIANE-------FQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIV 160 (574)
Q Consensus 110 ~~~va~~~~~-------~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~ll 160 (574)
...+ ..+.. -+|.++++......+.. ...|.+..+..+...++...++++
T Consensus 201 ~g~~-~al~~~g~~vP~~dv~vig~D~~~~~~~~i~~~~~lttv~~~~~~~g~~av~~l 258 (297)
T 3rot_A 201 DPLG-QMLLHPDRYDFNYQPQVYSFDKTPNTVSLIHKKLVNYVMDQQPFLMGYLSITQL 258 (297)
T ss_dssp HHHH-HHHHSHHHHTCCCCCEEEEECCCHHHHHHHHTTSCCEEECCCHHHHHHHHHHHH
T ss_pred HHHH-HHHHhcCCccCCCceEEEEeCCCHHHHHHHHcCCceEEEecChHHHHHHHHHHH
Confidence 3333 33322 36667765433221111 112444555566666666666654
No 232
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=39.29 E-value=34 Score=33.57 Aligned_cols=82 Identities=11% Similarity=0.126 Sum_probs=51.5
Q ss_pred HHHHHHHcCCeEEEEEEEcCCCCc-chHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC--h
Q 008205 156 IADIVDYFGWRNVIALYVDDDHGR-NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY--D 232 (574)
Q Consensus 156 i~~ll~~~~W~~v~ii~~~~~~g~-~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~--~ 232 (574)
+.++++ +| +++.+|+++..... ...+.+.+.++ |+.+.......++.+.+.+.+.++.+++.+.+.||-.+. .
T Consensus 43 l~~~l~-~g-~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 118 (408)
T 1oj7_A 43 LREQIP-HD-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSV 118 (408)
T ss_dssp HHHHSC-TT-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEESHHH
T ss_pred HHHHHh-cC-CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchH
Confidence 455666 77 89999985442221 24677777775 766543333333456677788888888888998887654 3
Q ss_pred HHHHHHHHH
Q 008205 233 IWGLEVLNA 241 (574)
Q Consensus 233 ~~~~~il~~ 241 (574)
-++..++..
T Consensus 119 iD~AK~iA~ 127 (408)
T 1oj7_A 119 LDGTKFIAA 127 (408)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 233
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=39.15 E-value=13 Score=32.99 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=26.7
Q ss_pred CcEEEEcCCChHHHHHHHHhhccCCccEEec
Q 008205 97 ETVAIIGPQFSVIAHLVSHIANEFQVPLLSF 127 (574)
Q Consensus 97 ~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~ 127 (574)
.|+.|+||..|.=......++..+++|+||.
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~hIst 60 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHLSS 60 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEEECH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceEcH
Confidence 7888999998877767788899999999985
No 234
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=39.11 E-value=1.4e+02 Score=27.30 Aligned_cols=111 Identities=14% Similarity=0.039 Sum_probs=63.3
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHH---
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIA--- 110 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~--- 110 (574)
+||++...+...+.....+++.|+++. |.++......+ .....+++.+++ .++.||+.+.+....
T Consensus 142 ~I~~i~~~~~~~~~~r~~g~~~al~~~--------gi~~~~~~~~~---~~~~~~~~~~l~-~~~dai~~~~D~~a~g~~ 209 (302)
T 2qh8_A 142 SIGVVYNPGEANAVSLMELLKLSAAKH--------GIKLVEATALK---SADVQSATQAIA-EKSDVIYALIDNTVASAI 209 (302)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHT--------TCEEEEEECSS---GGGHHHHHHHHG-GGCSEEEECSCHHHHTTH
T ss_pred EEEEEecCCCcchHHHHHHHHHHHHHc--------CCEEEEEecCC---hHHHHHHHHHHh-ccCCEEEECCcHhHHHHH
Confidence 688887654322344567777777652 34444433322 233344455555 478888877665432
Q ss_pred HHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHH
Q 008205 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVD 161 (574)
Q Consensus 111 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~ 161 (574)
.++...+...+||++++... .+.. |-+..+..+...+++..++++.
T Consensus 210 ~~l~~~~~~~~i~vig~d~~--~~~~---~~Lttv~~~~~~~G~~Aa~~l~ 255 (302)
T 2qh8_A 210 EGMIVAANQAKTPVFGAATS--YVER---GAIASLGFDYYQIGVQTADYVA 255 (302)
T ss_dssp HHHHHHHHHTTCCEEESSHH--HHHT---TCSEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEECCHH--HHhC---CcEEEEeCCHHHHHHHHHHHHH
Confidence 23444555679999986321 1221 4555666777778887777643
No 235
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=38.91 E-value=2.6e+02 Score=26.59 Aligned_cols=130 Identities=18% Similarity=0.106 Sum_probs=72.6
Q ss_pred EEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC---CCH-HHHHHHHHHhHhcCcEEEEcCCChH
Q 008205 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTN---YSR-FLGMVEALTLLENETVAIIGPQFSV 108 (574)
Q Consensus 33 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~---~~~-~~a~~~~~~l~~~~v~aiiGp~~s~ 108 (574)
-.|+.+|-..+ -+.+.+|+.|+.++ ++..+.+...+++ +.+ .-+++.+..+ . .++++=++. ..
T Consensus 68 k~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~vi~l~~~~ss~~kgEsl~DTarvLs~~-~-D~IviR~~~-~~ 134 (359)
T 2w37_A 68 KNIALLFEKSS---TRTRSAFTTASIDL-------GAHPEYLGQNDIQLGKKESTSDTAKVLGSM-F-DGIEFRGFK-QS 134 (359)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECTTTCCTTTSSCHHHHHHHHHHH-C-SEEEEESSC-HH
T ss_pred CEEEEEecCCC---ccHHHHHHHHHHHc-------CCeEEEeCCccccCCCCcCHHHHHHHHHHh-c-CEEEEecCC-hH
Confidence 46899997765 37899999999985 3433433322222 122 2233333233 1 444444543 22
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcC-C--eEEEEEEEcCCCCcchH
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG-W--RNVIALYVDDDHGRNGI 182 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~-W--~~v~ii~~~~~~g~~~~ 182 (574)
.+..++...+||+|.- .++ ...| .++++|++ +++| + .+++++.+ .. ....
T Consensus 135 ---~~~~lA~~s~vPVINa-~~~-----~~HP------------tQaLaDl~Ti~E~~g~l~gl~va~vGD--~~-~rva 190 (359)
T 2w37_A 135 ---DAEILARDSGVPVWNG-LTD-----EWHP------------TQMLADFMTVKENFGKLQGLTLTFMGD--GR-NNVA 190 (359)
T ss_dssp ---HHHHHHHHSSSCEEEE-ECS-----SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESC--TT-SHHH
T ss_pred ---HHHHHHHhCCCCEEcC-CCC-----CCCc------------cHHHHHHHHHHHHhCCcCCeEEEEECC--Cc-cchH
Confidence 3445566668999983 221 1222 36777764 4555 2 46666643 22 3466
Q ss_pred HHHHHHHhhcCcEEEEE
Q 008205 183 AALGDKLAEKRCRLSHK 199 (574)
Q Consensus 183 ~~l~~~~~~~g~~v~~~ 199 (574)
..+...+...|..+...
T Consensus 191 ~Sl~~~~~~lG~~v~~~ 207 (359)
T 2w37_A 191 NSLLVTGAILGVNIHIV 207 (359)
T ss_dssp HHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHcCCEEEEE
Confidence 77777787888877654
No 236
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=38.90 E-value=1.2e+02 Score=28.77 Aligned_cols=88 Identities=13% Similarity=0.067 Sum_probs=65.2
Q ss_pred cCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeE
Q 008205 146 TQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRI 225 (574)
Q Consensus 146 ~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~v 225 (574)
.|+.....+.+.++++..+-++|.|.++.+. ....|++.+.+.++.+. .+.+ + ..++....-..++.
T Consensus 261 lPSle~I~rqIk~~vk~~~lksVFIATDa~~----~~~ELk~~L~~~~v~vv---~~~p--e----~a~ID~~I~~~A~~ 327 (362)
T 3zy2_A 261 SPSKQQILEQIVEKVGSIGAKSVFVASDKDH----MIDEINEALKPYEIEAH---RQEP--D----DMYTSLAIMGRADL 327 (362)
T ss_dssp SCCHHHHHHHHHHHHHHHTCSEEEEEESSCC----CHHHHHHHHGGGTCCEE---CCSS--C----CHHHHHHHHHHSSE
T ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEecCCHH----HHHHHHHHhhccCceEE---EeCC--c----hhHHHHHHHHhCCE
Confidence 5899999999999999999999988874443 47888888887777654 2332 2 24555555567888
Q ss_pred EEEEeChHHHHHHHHHHHHCC
Q 008205 226 LILHTYDIWGLEVLNAAKHLR 246 (574)
Q Consensus 226 iil~~~~~~~~~il~~a~~~g 246 (574)
+|-.|...-...|.++=..+|
T Consensus 328 FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 328 FVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp EEECTTCHHHHHHHHHHHHSS
T ss_pred eecCccccccHHHHHHHHhcC
Confidence 988888888888877666666
No 237
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=38.34 E-value=1.8e+02 Score=24.48 Aligned_cols=66 Identities=9% Similarity=0.048 Sum_probs=43.9
Q ss_pred cCCeEEEEEEEcCC----------CCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC-CCeEEEEEe
Q 008205 163 FGWRNVIALYVDDD----------HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM-MSRILILHT 230 (574)
Q Consensus 163 ~~W~~v~ii~~~~~----------~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~-~~~viil~~ 230 (574)
++--++++|...|+ .-......+.+.+++.|..+.....++ .+.+.+...+++..+. +.++||..+
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~--Dd~~~I~~al~~a~~~~~~DlVittG 89 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVP--DDKIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEEC--SCHHHHHHHHHHHHTCTTCCEEEEES
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEECC
Confidence 34457888775542 223455678888888898887766565 3556677777776544 588888864
No 238
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=38.13 E-value=65 Score=29.63 Aligned_cols=80 Identities=8% Similarity=-0.067 Sum_probs=50.8
Q ss_pred CCeEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHH
Q 008205 164 GWRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNA 241 (574)
Q Consensus 164 ~W~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~ 241 (574)
+=+.|+++..+ +++.....+.+++.+++.|+.+..... . .+.......++.+...+.+.||+..........+..
T Consensus 14 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~ 90 (303)
T 3kke_A 14 RSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQI-D--APPRGTQQLSRLVSEGRVDGVLLQRREDFDDDMLAA 90 (303)
T ss_dssp ---CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEEC-C--STTHHHHHHHHHHHSCSSSEEEECCCTTCCHHHHHH
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeC-C--CChHHHHHHHHHHHhCCCcEEEEecCCCCcHHHHHH
Confidence 33568888765 346667788899999999988765432 1 233445677888888888888886543222215566
Q ss_pred HHHCCC
Q 008205 242 AKHLRM 247 (574)
Q Consensus 242 a~~~gm 247 (574)
+.+ |+
T Consensus 91 l~~-~i 95 (303)
T 3kke_A 91 VLE-GV 95 (303)
T ss_dssp HHT-TS
T ss_pred HhC-CC
Confidence 665 54
No 239
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=37.83 E-value=2.3e+02 Score=27.01 Aligned_cols=135 Identities=12% Similarity=0.058 Sum_probs=74.0
Q ss_pred EEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEe------c---------CCCCH-HHHHHHHHHhHhc
Q 008205 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVH------D---------TNYSR-FLGMVEALTLLEN 96 (574)
Q Consensus 33 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~------d---------~~~~~-~~a~~~~~~l~~~ 96 (574)
-.|+.+|...+ -+.+.+|+.|+.++ +|..+.+... + ..+.+ ..+++.+..+ -
T Consensus 59 k~la~lF~epS---TRTR~SFE~A~~~L-------Gg~~i~l~~~~~ss~~~s~~~~vm~~~kgEsl~DTarvLs~y--~ 126 (359)
T 1zq6_A 59 KSIALVFFNPS---MRTRTSFELGAFQL-------GGHAVVLQPGKDAWPIEFNLGTVMDGDTEEHIAEVARVLGRY--V 126 (359)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECHHHHSCCEECSSSCCCCSSCCEEHHHHHHHHHHH--C
T ss_pred CEEEEEeCCCC---cchhhhHHHHHHHc-------CCeEEEeCCCcccccccccccccccCCCCCcHHHHHHHHHHh--C
Confidence 46888998765 37889999999985 4444444322 2 22222 2233332222 2
Q ss_pred CcEEEEcCCCh---H---HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcCC--
Q 008205 97 ETVAIIGPQFS---V---IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFGW-- 165 (574)
Q Consensus 97 ~v~aiiGp~~s---~---~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~W-- 165 (574)
.++++=.+..- . ....+..++...+||+|.- .++ . +| .++++|++ +++|.
T Consensus 127 D~IviR~~~~~~~~~~~~~~~~~~~lA~~~~vPVINa-g~g---------~----HP-----tQaLaDl~TI~E~~g~~~ 187 (359)
T 1zq6_A 127 DLIGVRAFPKFVDWSKDREDQVLKSFAKYSPVPVINM-ETI---------T----HP-----CQELAHALALQEHFGTPD 187 (359)
T ss_dssp SEEEEECCCCSSCHHHHTTCHHHHHHHHHCSSCEEES-SSS---------C----CH-----HHHHHHHHHHHHHHTSSC
T ss_pred cEEEEeccccccccccccchHHHHHHHHhCCCCEEeC-CCC---------C----Cc-----HHHHHHHHHHHHHhCCCc
Confidence 34444454110 0 1233455667778999973 211 1 33 26777763 56664
Q ss_pred ---eE--EEEEEEcCCC-CcchHHHHHHHHhhcCcEEEEE
Q 008205 166 ---RN--VIALYVDDDH-GRNGIAALGDKLAEKRCRLSHK 199 (574)
Q Consensus 166 ---~~--v~ii~~~~~~-g~~~~~~l~~~~~~~g~~v~~~ 199 (574)
.+ ++++. |--+ |......+...+...|.++...
T Consensus 188 l~glkvvva~vG-Dl~~~~nrva~Sl~~~~~~~G~~v~~~ 226 (359)
T 1zq6_A 188 LRGKKYVLTWTY-HPKPLNTAVANSALTIATRMGMDVTLL 226 (359)
T ss_dssp CTTCEEEEEECC-CSSCCCSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCeeEEEEEe-cccccccchHHHHHHHHHHcCCEEEEE
Confidence 46 44443 2112 2456778888888888877654
No 240
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=37.71 E-value=2e+02 Score=26.03 Aligned_cols=111 Identities=14% Similarity=0.074 Sum_probs=61.3
Q ss_pred EEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhcCcEEEEcCCChHHHH-
Q 008205 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAH- 111 (574)
Q Consensus 33 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~- 111 (574)
=+||++...+...+.....+++.|+++. |.++......+ .....+.+.+++ .++.||+.+.+.....
T Consensus 134 ~~I~~i~~~~~~~~~~r~~g~~~al~~~--------gi~~~~~~~~~---~~~~~~~~~~l~-~~~dai~~~~D~~a~g~ 201 (295)
T 3lft_A 134 KTIGALYSSSEDNSKTQVEEFKAYAEKA--------GLTVETFAVPS---TNEIASTVTVMT-SKVDAIWVPIDNTIASG 201 (295)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHT--------TCEEEEEEESS---GGGHHHHHHHHT-TTCSEEEECSCHHHHHT
T ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHc--------CCEEEEEecCC---HHHHHHHHHHHH-hcCCEEEECCchhHHHH
Confidence 3678877654322344556777777652 34444333222 223334444554 4788888876654432
Q ss_pred --HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH
Q 008205 112 --LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV 160 (574)
Q Consensus 112 --~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll 160 (574)
++...+...+||++++... .+.. +-+..+..+...+++..++++
T Consensus 202 ~~~l~~~~~~~~i~vig~d~~--~~~~---~~Lttv~~~~~~~G~~Aa~~l 247 (295)
T 3lft_A 202 FPTVVSSNQSSKKPIYPSATA--MVEV---GGLASVVIDQHDLGVATGKMI 247 (295)
T ss_dssp HHHHHHHTTTTCCCEEESSHH--HHTT---TCCEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEeCCHH--HHhc---CcEEEEecCHHHHHHHHHHHH
Confidence 2344455678999986321 1221 334556667777787777764
No 241
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=37.35 E-value=1.2e+02 Score=28.54 Aligned_cols=78 Identities=8% Similarity=-0.055 Sum_probs=50.0
Q ss_pred eEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHH
Q 008205 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAK 243 (574)
Q Consensus 166 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~ 243 (574)
+.++++..+ +++.....+.+++.+++.|+.+..... ..+.......++.+...+.+.||+...... ...+..+.
T Consensus 69 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~-~~~~~~l~ 144 (344)
T 3kjx_A 69 NLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVT---DYLPEKEEKVLYEMLSWRPSGVIIAGLEHS-EAARAMLD 144 (344)
T ss_dssp SEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEEC---TTCHHHHHHHHHHHHTTCCSEEEEECSCCC-HHHHHHHH
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEECCCCC-HHHHHHHH
Confidence 367777754 456667778888899999988754321 123444556777777778888888643322 24566666
Q ss_pred HCCC
Q 008205 244 HLRM 247 (574)
Q Consensus 244 ~~gm 247 (574)
+.|+
T Consensus 145 ~~~i 148 (344)
T 3kjx_A 145 AAGI 148 (344)
T ss_dssp HCSS
T ss_pred hCCC
Confidence 6664
No 242
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=37.31 E-value=68 Score=26.79 Aligned_cols=81 Identities=10% Similarity=0.014 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC
Q 008205 152 QMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (574)
Q Consensus 152 ~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~ 231 (574)
.++.+..+.++++-+++.++- |........+.+.......|+.+.. + +.++....+++-+..+.++++++-+
T Consensus 17 HGQV~t~W~~~~~~~~IiVvn-D~vA~D~~~k~~lk~a~P~gvk~~i---~----sve~ai~~~~~~~~~~~~v~ll~k~ 88 (165)
T 1vsq_C 17 HGQVATRWTKETNVSRIIVVS-DEVAADTVRKTLLTQVAPPGVTAHV---V----DVAKMIRVYNNPKYAGERVMLLFTN 88 (165)
T ss_dssp CTTHHHHHHHHTTCSEEEEEC-HHHHTCHHHHHHHHHTCCTTCEEEE---E----CHHHHHHHHTCGGGTTCEEEEEESS
T ss_pred chheeeeeccccCCCEEEEeC-ccccCCHHHHHHHHhcCCCCCeEEE---E----EHHHHHHHHhccccCCcEEEEEECC
Confidence 356778899999999998874 3322334666777777777887653 2 2334445555544567899999999
Q ss_pred hHHHHHHHH
Q 008205 232 DIWGLEVLN 240 (574)
Q Consensus 232 ~~~~~~il~ 240 (574)
+.++..+.+
T Consensus 89 p~d~~~lve 97 (165)
T 1vsq_C 89 PTDVERLVE 97 (165)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998877653
No 243
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=37.30 E-value=53 Score=29.57 Aligned_cols=80 Identities=14% Similarity=0.029 Sum_probs=50.7
Q ss_pred EEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCC-CeEEEEEeC-hHHHHHHHHHH
Q 008205 167 NVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMM-SRILILHTY-DIWGLEVLNAA 242 (574)
Q Consensus 167 ~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~-~~viil~~~-~~~~~~il~~a 242 (574)
+++++..+ +++.....+.+++.+++.|+.+..... ....+.......++.+...+ .+.||+... .......++++
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~~~ 80 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRST-KDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQY 80 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCC-SSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHHH
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC-CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHH
Confidence 56777654 345566778888888899988764321 11123344456677776667 888888653 34455677777
Q ss_pred HHCCC
Q 008205 243 KHLRM 247 (574)
Q Consensus 243 ~~~gm 247 (574)
.+.|+
T Consensus 81 ~~~~i 85 (276)
T 3ksm_A 81 RARNI 85 (276)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77664
No 244
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=37.03 E-value=86 Score=28.64 Aligned_cols=80 Identities=8% Similarity=-0.088 Sum_probs=48.8
Q ss_pred eEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC-hHHHHHHHHHH
Q 008205 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNAA 242 (574)
Q Consensus 166 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-~~~~~~il~~a 242 (574)
.+++++..+ +++.....+.+++.+++.|+.+.... +...+.......++.+...+.+.||+... .......++++
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~ 82 (303)
T 3d02_A 5 KTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVG--PSSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKA 82 (303)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEEC--CSSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHHH
T ss_pred eEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 467777643 34555667788888888898765321 11123344455677776777888877643 33344566777
Q ss_pred HHCCC
Q 008205 243 KHLRM 247 (574)
Q Consensus 243 ~~~gm 247 (574)
.+.|+
T Consensus 83 ~~~~i 87 (303)
T 3d02_A 83 RDAGI 87 (303)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 76553
No 245
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=36.65 E-value=2.6e+02 Score=25.93 Aligned_cols=132 Identities=14% Similarity=0.144 Sum_probs=73.8
Q ss_pred EEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc--CcEEEEcCCChHHH
Q 008205 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN--ETVAIIGPQFSVIA 110 (574)
Q Consensus 33 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~--~v~aiiGp~~s~~~ 110 (574)
-.++.+|-..+ -+.+.+|+.|+.++ +|..+.+...+++-.--+.++-..+.++. .++++=.+. .
T Consensus 40 k~l~~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~-~--- 105 (307)
T 2i6u_A 40 RGVAVIFDKNS---TRTRFSFELGIAQL-------GGHAVVVDSGSTQLGRDETLQDTAKVLSRYVDAIVWRTFG-Q--- 105 (307)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEEEGGGSGGGGTCCHHHHHHHHHHHEEEEEEECSS-H---
T ss_pred CEEEEEecCCC---cchHHHHHHHHHHc-------CCeEEEECCccccCCCCCCHHHHHHHHHHhCCEEEEecCC-h---
Confidence 36888997765 37899999999985 45555554333321111112222222332 233333432 2
Q ss_pred HHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcC-C--eEEEEEEEcCCCCcchHHH
Q 008205 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG-W--RNVIALYVDDDHGRNGIAA 184 (574)
Q Consensus 111 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~-W--~~v~ii~~~~~~g~~~~~~ 184 (574)
..+..++...++|+|.- .+ +...| .++++|++ +++| + .+++++.+ .. ......
T Consensus 106 ~~~~~lA~~~~vPVINa-~~-----~~~HP------------tQaLaDl~Ti~e~~g~l~gl~va~vGD--~~-~rva~S 164 (307)
T 2i6u_A 106 ERLDAMASVATVPVINA-LS-----DEFHP------------CQVLADLQTIAERKGALRGLRLSYFGD--GA-NNMAHS 164 (307)
T ss_dssp HHHHHHHHHCSSCEEES-CC-----SSCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESC--TT-SHHHHH
T ss_pred hHHHHHHhhCCCCEEcC-CC-----CCcCc------------cHHHHHHHHHHHHhCCcCCeEEEEECC--CC-cCcHHH
Confidence 23455566678999983 22 11222 36777764 4554 2 47777753 22 356677
Q ss_pred HHHHHhhcCcEEEEE
Q 008205 185 LGDKLAEKRCRLSHK 199 (574)
Q Consensus 185 l~~~~~~~g~~v~~~ 199 (574)
+...+...|.++...
T Consensus 165 l~~~~~~~g~~v~~~ 179 (307)
T 2i6u_A 165 LLLGGVTAGIHVTVA 179 (307)
T ss_dssp HHHHHHHTTCEEEEE
T ss_pred HHHHHHHCCCEEEEE
Confidence 788888889887654
No 246
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=35.94 E-value=1.5e+02 Score=26.74 Aligned_cols=85 Identities=13% Similarity=-0.006 Sum_probs=56.4
Q ss_pred HHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh--
Q 008205 155 AIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-- 232 (574)
Q Consensus 155 ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~-- 232 (574)
.++.-.... -.=+.+++ |..|.......++..-+.-++.|.....+ .+.+ ++.+.+..+++.|++.+..
T Consensus 65 ~iA~~y~~~-A~~IsVlT-d~~~F~gs~~dL~~ir~~v~lPvLrKDfi-----~~~~--qi~ea~~~GAD~ilLi~a~l~ 135 (251)
T 1i4n_A 65 DFIRMYDEL-ADAISILT-EKHYFKGDPAFVRAARNLTCRPILAKDFY-----IDTV--QVKLASSVGADAILIIARILT 135 (251)
T ss_dssp HHHHHHHHH-CSEEEEEC-CCSSSCCCTHHHHHHHTTCCSCEEEECCC-----CSTH--HHHHHHHTTCSEEEEEGGGSC
T ss_pred HHHHHHHHh-CCceEEEe-cccccCCCHHHHHHHHHhCCCCEEEeeCC-----CCHH--HHHHHHHcCCCEEEEecccCC
Confidence 344443333 56677776 55566666677766655556776644422 1223 4666888999999998654
Q ss_pred -HHHHHHHHHHHHCCCC
Q 008205 233 -IWGLEVLNAAKHLRMM 248 (574)
Q Consensus 233 -~~~~~il~~a~~~gm~ 248 (574)
.....++..|+++||.
T Consensus 136 ~~~l~~l~~~a~~lGl~ 152 (251)
T 1i4n_A 136 AEQIKEIYEAAEELGMD 152 (251)
T ss_dssp HHHHHHHHHHHHTTTCE
T ss_pred HHHHHHHHHHHHHcCCe
Confidence 6788999999999884
No 247
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=35.70 E-value=2.6e+02 Score=25.59 Aligned_cols=141 Identities=8% Similarity=-0.077 Sum_probs=82.5
Q ss_pred CHHHHHHHHHHhHhcCcEE-EEcCC--ChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHH
Q 008205 82 SRFLGMVEALTLLENETVA-IIGPQ--FSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIAD 158 (574)
Q Consensus 82 ~~~~a~~~~~~l~~~~v~a-iiGp~--~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ 158 (574)
.+......+.+.++.|+.+ |+.+. .......+...+.+.++.++.+.+. .+-+.. ....-..|..
T Consensus 73 P~~~~~~~~~ea~~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~liGPNc~--Gi~~p~-~~~~~~~~~~--------- 140 (288)
T 2nu8_A 73 PAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNTP--GVITPG-ECKIGIQPGH--------- 140 (288)
T ss_dssp CGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEECSSCC--EEEETT-TEEEESSCTT---------
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEecCCc--ceecCC-cceeEecccC---------
Confidence 4455566667777777775 44443 2334557888888899988876542 222111 1111122321
Q ss_pred HHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCC-hhhHHHHHHHhhc-CCCeEEEEEeCh----
Q 008205 159 IVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGS-RNQIIDTLLTVSS-MMSRILILHTYD---- 232 (574)
Q Consensus 159 ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~-~~~~~~~l~~ik~-~~~~viil~~~~---- 232 (574)
.+.--++++|..... ....+...+.+.|+-++....+-.... ..++.+.|+.+.+ .++++|+++...
T Consensus 141 ---~~~~G~i~~vsqSG~----l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~l~~D~~t~~I~l~~E~~~~~ 213 (288)
T 2nu8_A 141 ---IHKPGKVGIVSRSGT----LTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSA 213 (288)
T ss_dssp ---SCCEEEEEEEESCHH----HHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSH
T ss_pred ---CCCCCCEEEEECcHH----HHHHHHHHHHhcCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeCCCH
Confidence 123357998875432 446667777778877666554443221 3567788887754 589999999764
Q ss_pred -HHHHHHHHH
Q 008205 233 -IWGLEVLNA 241 (574)
Q Consensus 233 -~~~~~il~~ 241 (574)
..+..++++
T Consensus 214 ~~~~~~~~~~ 223 (288)
T 2nu8_A 214 EEEAAAYIKE 223 (288)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 345556655
No 248
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=35.65 E-value=1.3e+02 Score=22.75 Aligned_cols=56 Identities=16% Similarity=0.149 Sum_probs=38.8
Q ss_pred hHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC--hHHHHHHHHHHHHC
Q 008205 181 GIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY--DIWGLEVLNAAKHL 245 (574)
Q Consensus 181 ~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~--~~~~~~il~~a~~~ 245 (574)
....+.+.+++.|..+.. .. + ....++.+.+..+++|+++.. ......++++.++.
T Consensus 15 ~~~~l~~~L~~~g~~v~~---~~---~---~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~ 72 (127)
T 3i42_A 15 AAETFKELLEMLGFQADY---VM---S---GTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRAL 72 (127)
T ss_dssp HHHHHHHHHHHTTEEEEE---ES---S---HHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCEEE---EC---C---HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 567788888888875542 21 2 345566666678999999853 45677888888886
No 249
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=35.56 E-value=1.9e+02 Score=23.98 Aligned_cols=67 Identities=9% Similarity=0.020 Sum_probs=45.7
Q ss_pred cCCeEEEEEEEcCCCCc---chHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc-CCCeEEEEEeC
Q 008205 163 FGWRNVIALYVDDDHGR---NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-MMSRILILHTY 231 (574)
Q Consensus 163 ~~W~~v~ii~~~~~~g~---~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~-~~~~viil~~~ 231 (574)
|.--+++||...++-|+ .....+.+.+++.|+.+.....++ .+...+...+++..+ .+.++||..+.
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~--Dd~~~i~~~l~~~~~~~~~DlVittGG 81 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVK--DDKESIQQAVLAGYHKEDVDVVLTNGG 81 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEEC--SSHHHHHHHHHHHHTCTTCSEEEEECC
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 34457888887665432 345678888888899887766665 455677777777654 36788888753
No 250
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=35.14 E-value=1.3e+02 Score=21.87 Aligned_cols=100 Identities=13% Similarity=0.038 Sum_probs=56.6
Q ss_pred CCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHh
Q 008205 139 YPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTV 218 (574)
Q Consensus 139 ~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i 218 (574)
..+-+|+.-++..+-..+-++++.|+-+-+.++.+|.+|.. ..-+|.+ ..|-.+.... +. .+...+...-++.
T Consensus 25 ngfkvrtvrspqelkdsieelvkkynativvvvvddkewae-kairfvk---slgaqvliii-yd--qdqnrleefsrev 97 (134)
T 2l69_A 25 NGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWAE-KAIRFVK---SLGAQVLIII-YD--QDQNRLEEFSREV 97 (134)
T ss_dssp TTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHHH-HHHHHHH---HHCCCCEEEE-EC--SCHHHHHHHHHHH
T ss_pred cCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHHH-HHHHHHH---hcCCeEEEEE-Ee--CchhHHHHHHHHH
Confidence 35678898899989999999999999888888875555432 2223333 3344333221 22 2444444444555
Q ss_pred hcCCCeEEEEEeChHHHHHHH-HHHHHCC
Q 008205 219 SSMMSRILILHTYDIWGLEVL-NAAKHLR 246 (574)
Q Consensus 219 k~~~~~viil~~~~~~~~~il-~~a~~~g 246 (574)
+..+-.+=- ..++++...-+ +-.++.|
T Consensus 98 rrrgfevrt-vtspddfkkslerlirevg 125 (134)
T 2l69_A 98 RRRGFEVRT-VTSPDDFKKSLERLIREVG 125 (134)
T ss_dssp HHTTCCEEE-ESSHHHHHHHHHHHHHHHC
T ss_pred HhcCceEEE-ecChHHHHHHHHHHHHHhc
Confidence 555554333 34555544333 3344444
No 251
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=34.93 E-value=91 Score=29.48 Aligned_cols=80 Identities=13% Similarity=-0.056 Sum_probs=50.8
Q ss_pred CCeEEEEEEEcC--CCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHH
Q 008205 164 GWRNVIALYVDD--DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNA 241 (574)
Q Consensus 164 ~W~~v~ii~~~~--~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~ 241 (574)
+-+.++++..+- .+.....+.+.+.+.+.|..+..... . .+.......++.+...+.+.||+...... ...+..
T Consensus 69 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-~~~~~~ 144 (355)
T 3e3m_A 69 RSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYT-A--YSPEREEQLVETMLRRRPEAMVLSYDGHT-EQTIRL 144 (355)
T ss_dssp --CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEEC-T--TCHHHHHHHHHHHHHTCCSEEEEECSCCC-HHHHHH
T ss_pred CCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC-C--CChHHHHHHHHHHHhCCCCEEEEeCCCCC-HHHHHH
Confidence 345788888653 34556778888899999988765421 1 23444556777777788888888653322 245666
Q ss_pred HHHCCC
Q 008205 242 AKHLRM 247 (574)
Q Consensus 242 a~~~gm 247 (574)
+.+.|+
T Consensus 145 l~~~~i 150 (355)
T 3e3m_A 145 LQRASI 150 (355)
T ss_dssp HHHCCS
T ss_pred HHhCCC
Confidence 666664
No 252
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=34.75 E-value=69 Score=29.10 Aligned_cols=80 Identities=6% Similarity=-0.086 Sum_probs=50.9
Q ss_pred CCeEEEEEEEc-------CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHH
Q 008205 164 GWRNVIALYVD-------DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGL 236 (574)
Q Consensus 164 ~W~~v~ii~~~-------~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~ 236 (574)
+=++|+++..+ +++.....+.+++.+++.|+.+... ....+.......++.+...+.+.||+...... .
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~-~ 82 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMS---TGETEEEIFNGVVKMVQGRQIGGIILLYSREN-D 82 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEEC---CCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT-C
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEE---eCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC-h
Confidence 33578888765 3455667788888899999877542 21122334456677777788888887643322 2
Q ss_pred HHHHHHHHCCC
Q 008205 237 EVLNAAKHLRM 247 (574)
Q Consensus 237 ~il~~a~~~gm 247 (574)
..++.+.+.|+
T Consensus 83 ~~~~~l~~~~i 93 (292)
T 3k4h_A 83 RIIQYLHEQNF 93 (292)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 45666766664
No 253
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=34.63 E-value=84 Score=28.61 Aligned_cols=78 Identities=10% Similarity=-0.046 Sum_probs=46.7
Q ss_pred eEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHH
Q 008205 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAK 243 (574)
Q Consensus 166 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~ 243 (574)
+.++++..+ +++.....+.+++.+++.|+.+.... . ..+.......++.+...+.+.||+...... ...++++.
T Consensus 17 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l~ 92 (289)
T 2fep_A 17 TTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSN-S--DQNMEKELHLLNTMLGKQVDGIVFMGGNIT-DEHVAEFK 92 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE-C--TTCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHHHHH
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEe-C--CCCHHHHHHHHHHHHhCCCCEEEEecCCCC-HHHHHHHH
Confidence 467888754 34455667778888888888775432 1 123344456677777778887877643211 23455555
Q ss_pred HCCC
Q 008205 244 HLRM 247 (574)
Q Consensus 244 ~~gm 247 (574)
+.|.
T Consensus 93 ~~~i 96 (289)
T 2fep_A 93 RSPV 96 (289)
T ss_dssp HSSS
T ss_pred hcCC
Confidence 5553
No 254
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=34.44 E-value=1.7e+02 Score=23.20 Aligned_cols=85 Identities=7% Similarity=0.010 Sum_probs=55.5
Q ss_pred EEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh----HHHHHHHHHH
Q 008205 167 NVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD----IWGLEVLNAA 242 (574)
Q Consensus 167 ~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~----~~~~~il~~a 242 (574)
++.+.....+....+..-+...++..|+++.+.-... . ....++..++.++++|.+.+.. .....++++.
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~---p---~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l 78 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLS---P---QELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKC 78 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEE---C---HHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHH
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCC---C---HHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHH
Confidence 5556555666666677888889999999987653321 2 3455666667789999998643 3355667777
Q ss_pred HHCCCCCCCeEEEEeC
Q 008205 243 KHLRMMESGYVWIVTD 258 (574)
Q Consensus 243 ~~~gm~~~~~~~i~~~ 258 (574)
++.|+. .-.+|+...
T Consensus 79 ~~~g~~-~i~v~vGG~ 93 (137)
T 1ccw_A 79 DEAGLE-GILLYVGGN 93 (137)
T ss_dssp HHTTCT-TCEEEEEES
T ss_pred HhcCCC-CCEEEEECC
Confidence 777753 234555543
No 255
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=34.40 E-value=98 Score=26.39 Aligned_cols=63 Identities=14% Similarity=0.108 Sum_probs=42.7
Q ss_pred eEEEEEEEcCCC----CcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe
Q 008205 166 RNVIALYVDDDH----GRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT 230 (574)
Q Consensus 166 ~~v~ii~~~~~~----g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~ 230 (574)
-+++||...|+- -......+.+.+++.|..+.....++ .+...+...+++....+.++||..+
T Consensus 31 ~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~--Dd~~~I~~al~~a~~~~~DlVIttG 97 (185)
T 3rfq_A 31 GRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVE--ADEVDIRNALNTAVIGGVDLVVSVG 97 (185)
T ss_dssp EEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEEC--SCHHHHHHHHHHHHHTTCSEEEEES
T ss_pred CEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeC--CCHHHHHHHHHHHHhCCCCEEEECC
Confidence 567777654321 23456778888888998887766665 3556677777776445688888864
No 256
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=34.08 E-value=1.4e+02 Score=27.00 Aligned_cols=80 Identities=6% Similarity=-0.071 Sum_probs=49.4
Q ss_pred CCeEEEEEEEc----CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHH
Q 008205 164 GWRNVIALYVD----DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVL 239 (574)
Q Consensus 164 ~W~~v~ii~~~----~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il 239 (574)
+=.+++++..+ +++.....+.+++.+++.|+.+.... ...+.......++.+...+.+.||+...... ...+
T Consensus 18 ~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~ 93 (296)
T 3brq_A 18 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD---GKHSAEEERQAIQYLLDLRCDAIMIYPRFLS-VDEI 93 (296)
T ss_dssp -CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEEC---CTTSHHHHHHHHHHHHHTTCSEEEEECSSSC-HHHH
T ss_pred CCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEe---CCCCHHHHHHHHHHHHhcCCCEEEEecCCCC-hHHH
Confidence 34578888865 34666777888889999998876432 1123344456677777778888887644221 1345
Q ss_pred HHHHH-CCC
Q 008205 240 NAAKH-LRM 247 (574)
Q Consensus 240 ~~a~~-~gm 247 (574)
+.+.+ .|.
T Consensus 94 ~~l~~~~~i 102 (296)
T 3brq_A 94 DDIIDAHSQ 102 (296)
T ss_dssp HHHHHTCSS
T ss_pred HHHHhcCCC
Confidence 55666 554
No 257
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=33.85 E-value=83 Score=28.51 Aligned_cols=78 Identities=5% Similarity=0.011 Sum_probs=46.5
Q ss_pred EEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC-hHHHHHHHHHHH
Q 008205 167 NVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNAAK 243 (574)
Q Consensus 167 ~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-~~~~~~il~~a~ 243 (574)
.++++..+ +++.....+.+++.+++.|+.+..... ..+...-...++.+...+.+.||+... .......++.+.
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 79 (283)
T 2ioy_A 3 TIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVEDS---QNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEAN 79 (283)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEecC---CCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHHHHH
Confidence 57777654 334556677778888888887754321 123333345666666677887777542 233334566676
Q ss_pred HCCC
Q 008205 244 HLRM 247 (574)
Q Consensus 244 ~~gm 247 (574)
+.|+
T Consensus 80 ~~~i 83 (283)
T 2ioy_A 80 SKNI 83 (283)
T ss_dssp HTTC
T ss_pred HCCC
Confidence 6664
No 258
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=33.62 E-value=50 Score=30.78 Aligned_cols=80 Identities=6% Similarity=-0.132 Sum_probs=49.5
Q ss_pred eEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe-ChHHHHHHHHHH
Q 008205 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT-YDIWGLEVLNAA 242 (574)
Q Consensus 166 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~-~~~~~~~il~~a 242 (574)
++|+++..+ +++.....+.+++.+++.|+.+... .+...+.......++.+...+.+.||+.. +......+++++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~--~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~~a 81 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYD--GPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRA 81 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEEC--CCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEE--CCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence 467777643 3455556677788888888776532 11122334445667777777888887764 333335677778
Q ss_pred HHCCC
Q 008205 243 KHLRM 247 (574)
Q Consensus 243 ~~~gm 247 (574)
.+.|+
T Consensus 82 ~~~gi 86 (316)
T 1tjy_A 82 MQRGV 86 (316)
T ss_dssp HHTTC
T ss_pred HHCcC
Confidence 77664
No 259
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=33.56 E-value=97 Score=29.00 Aligned_cols=81 Identities=12% Similarity=0.064 Sum_probs=45.8
Q ss_pred eEEEEEEEc---CCCCcchHHHHHHHHhhcCcEEEEEeecCC-CCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHH
Q 008205 166 RNVIALYVD---DDHGRNGIAALGDKLAEKRCRLSHKVPLSP-KGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNA 241 (574)
Q Consensus 166 ~~v~ii~~~---~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~-~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~ 241 (574)
.+|+++..+ +++.....+.+.+.+++.|+.+........ ..+.......++.+...+.+.||+..........+++
T Consensus 44 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 123 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEH 123 (342)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHHHH
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHHHH
Confidence 467777754 345556677788888888876544321111 0133334456677666778888774333322345555
Q ss_pred HHHCC
Q 008205 242 AKHLR 246 (574)
Q Consensus 242 a~~~g 246 (574)
+.+.|
T Consensus 124 ~~~~~ 128 (342)
T 1jx6_A 124 VLDST 128 (342)
T ss_dssp HHHHC
T ss_pred HHHcC
Confidence 65544
No 260
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=33.50 E-value=72 Score=28.73 Aligned_cols=76 Identities=9% Similarity=0.011 Sum_probs=48.7
Q ss_pred eEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHH-HH
Q 008205 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLN-AA 242 (574)
Q Consensus 166 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~-~a 242 (574)
+.|+++..+ +.+.....+.+.+.+++.|+.+..... ..+.......++.+...+.+.||+.... ...++ .+
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~~dgiIi~~~~---~~~~~~~l 82 (277)
T 3e61_A 9 KLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNS---DNDIKKAQGYLATFVSHNCTGMISTAFN---ENIIENTL 82 (277)
T ss_dssp -CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECGGG---HHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEecCC---hHHHHHHH
Confidence 568888765 345556778888888889987765321 1244445667777777888888887632 23456 66
Q ss_pred HHCCC
Q 008205 243 KHLRM 247 (574)
Q Consensus 243 ~~~gm 247 (574)
.+.|+
T Consensus 83 ~~~~i 87 (277)
T 3e61_A 83 TDHHI 87 (277)
T ss_dssp HHC-C
T ss_pred HcCCC
Confidence 66664
No 261
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=32.79 E-value=1.3e+02 Score=24.88 Aligned_cols=63 Identities=14% Similarity=0.036 Sum_probs=42.3
Q ss_pred EEEEEEEcCC-----CCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC-CCeEEEEEeC
Q 008205 167 NVIALYVDDD-----HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM-MSRILILHTY 231 (574)
Q Consensus 167 ~v~ii~~~~~-----~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~-~~~viil~~~ 231 (574)
+++||...++ .-......+.+.+++.|+.+.....++ .+...+...+++..+. +.++||..+.
T Consensus 3 ~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~--Dd~~~i~~~l~~~~~~~~~DlVittGG 71 (164)
T 2is8_A 3 RVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVP--DEPPMIKKVLRLWADREGLDLILTNGG 71 (164)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEEC--SCHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred EEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcC--CCHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 5666664432 112355678888999998887766665 4556777888776554 6888888743
No 262
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=31.69 E-value=1e+02 Score=27.55 Aligned_cols=79 Identities=5% Similarity=-0.027 Sum_probs=48.1
Q ss_pred eEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC-hHHHHHHHHHH
Q 008205 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNAA 242 (574)
Q Consensus 166 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~-~~~~~~il~~a 242 (574)
+.++++..+ ++|.....+.+++.+++.|..+..... . .+...-...++.+...+.+.||+... .......++.+
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS-Q--NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMA 78 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC-T--TCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeCC-C--CCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 467777754 345556677888888888987765321 1 23333445677777778888887543 22223456667
Q ss_pred HHCCC
Q 008205 243 KHLRM 247 (574)
Q Consensus 243 ~~~gm 247 (574)
.+.|.
T Consensus 79 ~~~~i 83 (271)
T 2dri_A 79 NQANI 83 (271)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 66654
No 263
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=31.52 E-value=50 Score=30.14 Aligned_cols=79 Identities=9% Similarity=-0.126 Sum_probs=48.5
Q ss_pred CeEEEEEEEcC--CCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHH
Q 008205 165 WRNVIALYVDD--DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAA 242 (574)
Q Consensus 165 W~~v~ii~~~~--~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a 242 (574)
=+.|+++..+. .+.....+.+++.+++.|+.+..... ..+.......++.+...+.+.||+..... ....++.+
T Consensus 8 ~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~~~~ 83 (291)
T 3egc_A 8 SNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANT---AEDIVREREAVGQFFERRVDGLILAPSEG-EHDYLRTE 83 (291)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCCSS-CCHHHHHS
T ss_pred CcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChHHHHHh
Confidence 35778887553 34455677888888888887765431 12344455677777777888888765432 33455555
Q ss_pred HHCCC
Q 008205 243 KHLRM 247 (574)
Q Consensus 243 ~~~gm 247 (574)
.+.|+
T Consensus 84 ~~~~i 88 (291)
T 3egc_A 84 LPKTF 88 (291)
T ss_dssp SCTTS
T ss_pred hccCC
Confidence 55443
No 264
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=31.52 E-value=3.1e+02 Score=25.14 Aligned_cols=133 Identities=8% Similarity=-0.061 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHhHhcCcE-EEEcCCC-h-HHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHH
Q 008205 81 YSRFLGMVEALTLLENETV-AIIGPQF-S-VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIA 157 (574)
Q Consensus 81 ~~~~~a~~~~~~l~~~~v~-aiiGp~~-s-~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~ 157 (574)
..+..+...+.+.++.|+. +|++... + .....+...+...++.++.+.+.- +-+.. ....-+.|..
T Consensus 72 vp~~~~~~~~~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~vigPNc~G--ii~~~-~~~~~~~~~~-------- 140 (288)
T 1oi7_A 72 VPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSRLIGGNCPG--IISAE-ETKIGIMPGH-------- 140 (288)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEEESSSCE--EEETT-TEEEESSCGG--------
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEeCCCCe--EEcCC-CceeEEcccC--------
Confidence 3455666677777788887 4444322 2 334567888888899988765432 22111 1111222221
Q ss_pred HHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCC-hhhHHHHHHHhhc-CCCeEEEEEeCh
Q 008205 158 DIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGS-RNQIIDTLLTVSS-MMSRILILHTYD 232 (574)
Q Consensus 158 ~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~-~~~~~~~l~~ik~-~~~~viil~~~~ 232 (574)
.+.--++++|.++.. ....+.+.+.+.|+-++....+-.... ..++.+.|+.+.+ .++++|+++...
T Consensus 141 ----~~~~G~va~vsqSG~----l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~t~~I~l~~E~ 209 (288)
T 1oi7_A 141 ----VFKRGRVGIISRSGT----LTYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEI 209 (288)
T ss_dssp ----GCCEEEEEEEESCHH----HHHHHHHHHHHTTCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCCEEEEEECS
T ss_pred ----CCCCCCEEEEECCHH----HHHHHHHHHHhCCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEee
Confidence 234467999985553 455677777888876666555543221 3467788888754 589999999774
No 265
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=31.42 E-value=2.2e+02 Score=23.41 Aligned_cols=85 Identities=7% Similarity=-0.007 Sum_probs=57.9
Q ss_pred eEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh----HHHHHHHHH
Q 008205 166 RNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD----IWGLEVLNA 241 (574)
Q Consensus 166 ~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~----~~~~~il~~ 241 (574)
.+|.+.....+....+..-+...++..|+++.+. ..... ...+++.+++.++++|.+.+.. ..+..++++
T Consensus 19 ~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~l---G~~~p---~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~ 92 (161)
T 2yxb_A 19 YKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYT---GLRQT---PEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAK 92 (161)
T ss_dssp CEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECC---CSBCC---HHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHH
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEEC---CCCCC---HHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHH
Confidence 4666666666666677888888999999998643 21122 3456777778899999998653 556777888
Q ss_pred HHHCCCCCCCeEEEEe
Q 008205 242 AKHLRMMESGYVWIVT 257 (574)
Q Consensus 242 a~~~gm~~~~~~~i~~ 257 (574)
.++.|.. .-.+|+..
T Consensus 93 L~~~g~~-~i~v~vGG 107 (161)
T 2yxb_A 93 LRELGAD-DIPVVLGG 107 (161)
T ss_dssp HHHTTCT-TSCEEEEE
T ss_pred HHhcCCC-CCEEEEeC
Confidence 8887752 23455554
No 266
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=31.30 E-value=2.5e+02 Score=24.98 Aligned_cols=114 Identities=12% Similarity=0.123 Sum_probs=60.7
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc---CcEEEEcCCChHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN---ETVAIIGPQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~---~v~aiiGp~~s~~ 109 (574)
+||++.... ......-..+++.++++. |.++. +.....+...+.+.+.++++. .+.||+..... .
T Consensus 120 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~--------g~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~-~ 188 (277)
T 3cs3_A 120 KVLLLSGPEKGYDSQERLAVSTRELTRF--------GIPYE--IIQGDFTEPSGYAAAKKILSQPQTEPVDVFAFNDE-M 188 (277)
T ss_dssp CEEEEECCTTSHHHHHHHHHHHHHHHHT--------TCCEE--EEECCSSHHHHHHHHHHHTTSCCCSSEEEEESSHH-H
T ss_pred eEEEEeCCccCccHHHHHHHHHHHHHHc--------CCCee--EEeCCCChhHHHHHHHHHHhcCCCCCcEEEEcChH-H
Confidence 477776543 222234567788887763 22333 333444666677777788865 68999975443 3
Q ss_pred HHHHHHhhccCC--cc----EEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH
Q 008205 110 AHLVSHIANEFQ--VP----LLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV 160 (574)
Q Consensus 110 ~~~va~~~~~~~--iP----~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll 160 (574)
+..+...+...+ || ++++.... ......|.+..+..+...++...++++
T Consensus 189 a~g~~~al~~~g~~vP~di~vvg~d~~~--~~~~~~p~lttv~~~~~~~g~~a~~~l 243 (277)
T 3cs3_A 189 AIGVYKYVAETNYQMGKDIRIIGFDNSE--LGAFVQPRLATIAYSKHRWGMVAAEKI 243 (277)
T ss_dssp HHHHHHHHTTSSCCBTTTEEEECSSCCH--HHHHSSSCCBEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCcEEEEEeCCcH--HHhccCCceeEEecCHHHHHHHHHHHH
Confidence 444445555543 44 45432211 111112334445555566666666654
No 267
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=31.15 E-value=1.3e+02 Score=22.85 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=37.4
Q ss_pred hHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC--hHHHHHHHHHHHHCC
Q 008205 181 GIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY--DIWGLEVLNAAKHLR 246 (574)
Q Consensus 181 ~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~--~~~~~~il~~a~~~g 246 (574)
....+.+.+++.|..+.. .. + ....+..+++..+++|+++.. ......++++.++..
T Consensus 18 ~~~~l~~~L~~~g~~v~~---~~---~---~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~ 76 (132)
T 3lte_A 18 MAAAIERVLKRDHWQVEI---AH---N---GFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNK 76 (132)
T ss_dssp HHHHHHHHHHHTTCEEEE---ES---S---HHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHCCcEEEE---eC---C---HHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 566777788877876542 11 2 234555666678899999854 345677888887754
No 268
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=30.70 E-value=1.6e+02 Score=27.41 Aligned_cols=128 Identities=16% Similarity=0.168 Sum_probs=73.6
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC---CC-HHHHHHHHHHhHhcCcEEEEcCCChHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTN---YS-RFLGMVEALTLLENETVAIIGPQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~---~~-~~~a~~~~~~l~~~~v~aiiGp~~s~~ 109 (574)
.++.+|...+ -+.+.+|+.|+.++ +|..+.+...+++ +. ..-+++.+..+ -.++++=.+..
T Consensus 47 ~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~--~D~iviR~~~~--- 111 (309)
T 4f2g_A 47 TLAMIFEKSS---TRTRLSFEAGIFQL-------GGHAVFMSTRDTQLGRGEPVEDSAQVISRM--VDIIMIRTFEQ--- 111 (309)
T ss_dssp EEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECCSSCEETBEECHHHHHHHHHHH--CSEEEEECSCH---
T ss_pred eEEEEecCCC---hhhHhhHHHHHHHc-------CCeEEEcCcccccCCCCCCHHHHHHHHHHh--CCEEEEecCCH---
Confidence 5899998766 47889999999985 4444443322221 21 22233333222 13333334432
Q ss_pred HHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcC---CeEEEEEEEcCCCCcchHH
Q 008205 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG---WRNVIALYVDDDHGRNGIA 183 (574)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~---W~~v~ii~~~~~~g~~~~~ 183 (574)
..+..++...+||+|.-+ ++ ...| .++++|++ +++| -.+|+++.+ +.....
T Consensus 112 -~~~~~lA~~~~vPVINag-~~-----~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vGD----~~~va~ 168 (309)
T 4f2g_A 112 -DIIQRFAENSRVPVINGL-TN-----EYHP------------CQVLADIFTYYEHRGPIRGKTVAWVGD----ANNMLY 168 (309)
T ss_dssp -HHHHHHHHTCSSCEEEEE-CS-----SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESC----CCHHHH
T ss_pred -HHHHHHHHhCCCCEEECC-CC-----ccCc------------HHHHHHHHHHHHHhCCCCCCEEEEECC----CcchHH
Confidence 334556677789999843 22 1212 36777763 4454 467888763 234667
Q ss_pred HHHHHHhhcCcEEEEE
Q 008205 184 ALGDKLAEKRCRLSHK 199 (574)
Q Consensus 184 ~l~~~~~~~g~~v~~~ 199 (574)
.+...+...|.++...
T Consensus 169 Sl~~~~~~~G~~v~~~ 184 (309)
T 4f2g_A 169 TWIQAARILDFKLQLS 184 (309)
T ss_dssp HHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHcCCEEEEE
Confidence 7777888888876654
No 269
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=30.33 E-value=53 Score=30.30 Aligned_cols=84 Identities=5% Similarity=-0.091 Sum_probs=51.4
Q ss_pred HHHcCCeEEEEEEEc-------CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh
Q 008205 160 VDYFGWRNVIALYVD-------DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD 232 (574)
Q Consensus 160 l~~~~W~~v~ii~~~-------~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~ 232 (574)
++.-+=+.|+++..+ +.+.....+.+++.+++.|+.+... ....+.......++.+...+.+.||+....
T Consensus 17 L~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 93 (305)
T 3huu_A 17 LITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMT---VSENSGDLYHEVKTMIQSKSVDGFILLYSL 93 (305)
T ss_dssp ----CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEEC---CCSSHHHHHHHHHHHHHTTCCSEEEESSCB
T ss_pred hhhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEE---eCCCChHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 333445678888765 3355566788888888999887642 211223334567777888888888886433
Q ss_pred HHHHHHHHHHHHCCC
Q 008205 233 IWGLEVLNAAKHLRM 247 (574)
Q Consensus 233 ~~~~~il~~a~~~gm 247 (574)
.. ...+..+.+.|+
T Consensus 94 ~~-~~~~~~l~~~~i 107 (305)
T 3huu_A 94 KD-DPIEHLLNEFKV 107 (305)
T ss_dssp TT-CHHHHHHHHTTC
T ss_pred CC-cHHHHHHHHcCC
Confidence 22 245666666664
No 270
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=30.25 E-value=1.6e+02 Score=26.77 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=26.7
Q ss_pred HHHHhHhcCcEEEEcCCChHHHHHHHHhhccC-CccEEe
Q 008205 89 EALTLLENETVAIIGPQFSVIAHLVSHIANEF-QVPLLS 126 (574)
Q Consensus 89 ~~~~l~~~~v~aiiGp~~s~~~~~va~~~~~~-~iP~Is 126 (574)
.+..+.+.|+.+|+-+-.+.++..+..+-..+ +||+|.
T Consensus 61 ~~~~L~~~g~~~iVIACNTa~~~al~~lr~~~~~iPvig 99 (268)
T 3out_A 61 TAKFLIDQEVKAIIIACNTISAIAKDIVQEIAKAIPVID 99 (268)
T ss_dssp HHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHCCCCEEEEeCCChHHHHHHHHHHhcCCCCEEe
Confidence 33445556999998765555555666777777 899997
No 271
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=29.76 E-value=1.6e+02 Score=27.23 Aligned_cols=80 Identities=5% Similarity=-0.054 Sum_probs=48.6
Q ss_pred CeEEEEEEEc-CCCCcchHHHHHHHHhhc-CcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh-HHHHHHHHH
Q 008205 165 WRNVIALYVD-DDHGRNGIAALGDKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEVLNA 241 (574)
Q Consensus 165 W~~v~ii~~~-~~~g~~~~~~l~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~-~~~~~il~~ 241 (574)
-.+|+++..+ +.+.......+++.+++. |+.+..... ..+.......++.+...+.+.||+.... ......+++
T Consensus 6 ~~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~ 82 (325)
T 2x7x_A 6 HFRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSA---GDDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIVEE 82 (325)
T ss_dssp CCEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHHHH
T ss_pred CeEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHH
Confidence 3578888754 223334566777888888 887765321 1233444566777777788888876543 333456677
Q ss_pred HHHCCC
Q 008205 242 AKHLRM 247 (574)
Q Consensus 242 a~~~gm 247 (574)
+.+.|+
T Consensus 83 ~~~~~i 88 (325)
T 2x7x_A 83 AYQKGI 88 (325)
T ss_dssp HHHTTC
T ss_pred HHHCCC
Confidence 766664
No 272
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=29.66 E-value=2.1e+02 Score=26.31 Aligned_cols=65 Identities=14% Similarity=0.039 Sum_probs=39.5
Q ss_pred HHhHhcCcEEEEcCCChHHH---HHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH
Q 008205 91 LTLLENETVAIIGPQFSVIA---HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV 160 (574)
Q Consensus 91 ~~l~~~~v~aiiGp~~s~~~---~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll 160 (574)
.+.+..++.+++.+.+.... ..+..++...++|+++... ..+.. --+.....+...+++..++++
T Consensus 187 ~~~l~~~~d~i~~~~d~~~~~~~~~i~~~~~~~~iPv~~~~~--~~v~~---G~l~~~~~~~~~~G~~aa~~a 254 (302)
T 3lkv_A 187 TQAIAEKSDVIYALIDNTVASAIEGMIVAANQAKTPVFGAAT--SYVER---GAIASLGFDYYQIGVQTADYV 254 (302)
T ss_dssp HHHHHTTCSEEEECSCHHHHHTHHHHHHHHHHTTCCEEESSH--HHHHT---TCSEEEECCHHHHHHHHHHHH
T ss_pred HHhccCCeeEEEEeCCcchhhHHHHHHHHHhhcCCceeeccc--ccccC---CceEEEecCHHHHHHHHHHHH
Confidence 34445678888888776543 4456677889999997421 11111 234555566677776666654
No 273
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=29.32 E-value=74 Score=27.19 Aligned_cols=81 Identities=7% Similarity=0.042 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC
Q 008205 152 QMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (574)
Q Consensus 152 ~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~ 231 (574)
.++.+..+.++++-+++.++- |........+.+.+.+...|+++.. + +.++....+++-+..+.++++++-+
T Consensus 35 HGQVat~W~k~~~~~~IiVvn-D~vA~D~~~k~~lkmA~P~gvk~~i---~----sve~ai~~~~~~~~~~~~v~il~k~ 106 (187)
T 3lfj_A 35 HGQVMTRWMKGFPEASIVIID-DELAVDEFMKNIYTMAAPPGVKVKV---F----GVDAALKEWSQKTSVEEKVFLLFKN 106 (187)
T ss_dssp CTTHHHHHHTTCTTCEEEEEC-HHHHHCHHHHHHHHHTSCTTCCEEE---E----CHHHHHHHHHSBCSSCEEEEEEESS
T ss_pred hhhhhheeccccCCCEEEEEC-ccccCCHHHHHHHHHhccCCCeEEE---E----EHHHHHHHHhCCccCCceEEEEECC
Confidence 457788899999999998874 3222233556666666667877653 2 2334445555544456788999989
Q ss_pred hHHHHHHHH
Q 008205 232 DIWGLEVLN 240 (574)
Q Consensus 232 ~~~~~~il~ 240 (574)
+.++.++++
T Consensus 107 p~d~~~lve 115 (187)
T 3lfj_A 107 IDTCKRVMD 115 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887754
No 274
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=29.23 E-value=56 Score=30.36 Aligned_cols=45 Identities=9% Similarity=0.059 Sum_probs=24.5
Q ss_pred CCeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHH
Q 008205 30 PPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGM 87 (574)
Q Consensus 30 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~ 87 (574)
+.+|+||.. ..+. .....+ -+.+-+. |++++++.+++...+.+|+
T Consensus 38 ~~~i~IG~~-~~~~----~~~~~~---~~~~~~~-----G~~Ve~~~f~~~~~~~~AL 82 (295)
T 1p99_A 38 DKKVTIGVA-SNDT----KAWEKV---KELAKKD-----DIDVEIKHFSDYNLPNKAL 82 (295)
T ss_dssp --CEEEEES-SSCC----HHHHHH---HHHHGGG-----TCCEEEEECSSTTSHHHHH
T ss_pred CCeEEEEEe-CCcH----HHHHHH---HHHHHHc-----CCeEEEEEeCChHHHHHHH
Confidence 457999988 4332 222222 2333332 5789998887765655443
No 275
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=29.04 E-value=3.5e+02 Score=25.09 Aligned_cols=133 Identities=16% Similarity=0.211 Sum_probs=72.5
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecC--CCCHHHHHHHHHHhHhc--CcEEEEcCCChHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDT--NYSRFLGMVEALTLLEN--ETVAIIGPQFSVI 109 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~--~~~~~~a~~~~~~l~~~--~v~aiiGp~~s~~ 109 (574)
.++.+|-..+ -+.+.+|+.|+.++ +|..+.+...++ +-.--+.++-..+.++. .++++=.+... .
T Consensus 43 ~la~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~~~S~~~kgEsl~DTarvls~~~D~iviR~~~~~-~ 111 (310)
T 3csu_A 43 VIASCFFEAS---TRTRLSFETSMHRL-------GASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEG-A 111 (310)
T ss_dssp EEEEEESSCC---HHHHHHHHHHHHTT-------TCEEEEESCC-----CCSHHHHHHHHHHHTTTCSEEEEEESSTT-H
T ss_pred EEEEEecCCC---ccHHHHHHHHHHHh-------CCeEEEeCCCccchhhccCCcHHHHHHHHHHhCCEEEEECCChh-H
Confidence 5888987765 47889999999874 444444433332 21223344444455555 33333344332 2
Q ss_pred HHHHHHhhccC-CccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcC-C--eEEEEEEEcCCCCcchH
Q 008205 110 AHLVSHIANEF-QVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG-W--RNVIALYVDDDHGRNGI 182 (574)
Q Consensus 110 ~~~va~~~~~~-~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~-W--~~v~ii~~~~~~g~~~~ 182 (574)
+..++... ++|+|.-+..+ ...| .++++|++ +++| + .+++++. |..++ ...
T Consensus 112 ---~~~la~~~~~vPVINag~G~-----~~HP------------tQaLaDl~Ti~e~~g~l~gl~va~vG-D~~~~-rva 169 (310)
T 3csu_A 112 ---ARLATEFSGNVPVLNAGDGS-----NQHP------------TQTLLDLFTIQETQGRLDNLHVAMVG-DLKYG-RTV 169 (310)
T ss_dssp ---HHHHHHHCTTCCEEEEEETT-----SCCH------------HHHHHHHHHHHHHHSCSSSCEEEEES-CTTTC-HHH
T ss_pred ---HHHHHHhcCCCCEEcCccCC-----CCCc------------hHHHHHHHHHHHHhCCcCCcEEEEEC-CCCCC-chH
Confidence 33445566 89999843212 1112 36777764 4555 2 4666664 22122 356
Q ss_pred HHHHHHHhhc-CcEEEEE
Q 008205 183 AALGDKLAEK-RCRLSHK 199 (574)
Q Consensus 183 ~~l~~~~~~~-g~~v~~~ 199 (574)
..+...+... |.++...
T Consensus 170 ~Sl~~~~~~~~g~~v~~~ 187 (310)
T 3csu_A 170 HSLTQALAKFDGNRFYFI 187 (310)
T ss_dssp HHHHHHHHTSSSCEEEEE
T ss_pred HHHHHHHHhCCCCEEEEE
Confidence 7777777777 8776654
No 276
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=28.92 E-value=93 Score=29.03 Aligned_cols=79 Identities=8% Similarity=-0.037 Sum_probs=47.8
Q ss_pred eEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCC--CeEEEEEeCh-HHHHHHHH
Q 008205 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMM--SRILILHTYD-IWGLEVLN 240 (574)
Q Consensus 166 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~--~~viil~~~~-~~~~~il~ 240 (574)
++|+++..+ +++.....+.+++.+++.|+.+..... ..+.......++.+...+ .+.||+.... ......++
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~---~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~~~ 82 (332)
T 2rjo_A 6 TTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTT---EGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVIVE 82 (332)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEEC---TTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHHHH
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecC---CCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHHHH
Confidence 467788754 334455667788888888887754321 123333455667766667 8888876443 33345666
Q ss_pred HHHHCCC
Q 008205 241 AAKHLRM 247 (574)
Q Consensus 241 ~a~~~gm 247 (574)
.+.+.|+
T Consensus 83 ~~~~~~i 89 (332)
T 2rjo_A 83 ACSKAGA 89 (332)
T ss_dssp HHHHHTC
T ss_pred HHHHCCC
Confidence 6666553
No 277
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157} SCOP: c.38.1.0
Probab=28.86 E-value=89 Score=26.16 Aligned_cols=80 Identities=9% Similarity=0.011 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhc-CcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe
Q 008205 152 QMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT 230 (574)
Q Consensus 152 ~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~ 230 (574)
.++.+..+.++++-+++.++- |........+.+.+..... |+++.. ++ .++....+++-+ .+.++++++-
T Consensus 19 HGQVat~W~k~~~~~~IiVvn-D~vA~D~~~k~~lkmA~P~~gvk~~i---~s----ve~ai~~~~~~~-~~~~v~il~k 89 (168)
T 3eye_A 19 HGQVGVTWTSTIGANLLVVVD-DVVANDDIQQKLMGITAETYGFGIRF---FT----IEKTINVIGKAA-PHQKIFLICR 89 (168)
T ss_dssp TTHHHHHHHHHHTCSEEEEEC-HHHHHSGGGGHHHHHHHHHHTCEEEE---EC----HHHHHHHGGGCC-TTCCEEEEES
T ss_pred chhhhheeccccCCCEEEEEc-ccccCCHHHHHHHHhcCCCCCCeEEE---EE----HHHHHHHHhccc-CCceEEEEEC
Confidence 467788899999999998884 3222223556666666666 887753 22 233444444433 5678999999
Q ss_pred ChHHHHHHHH
Q 008205 231 YDIWGLEVLN 240 (574)
Q Consensus 231 ~~~~~~~il~ 240 (574)
++.++.++++
T Consensus 90 ~p~d~~~lve 99 (168)
T 3eye_A 90 TPQTVRKLVE 99 (168)
T ss_dssp SHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999887754
No 278
>1ou0_A Precorrin-8X methylmutase related protein; structural genomics, PSI, protein structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: c.23.17.1
Probab=28.81 E-value=64 Score=28.00 Aligned_cols=69 Identities=17% Similarity=0.198 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc---CcEEEEc-CCChHHHHHHHHhhccCCcc
Q 008205 48 VAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN---ETVAIIG-PQFSVIAHLVSHIANEFQVP 123 (574)
Q Consensus 48 ~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~---~v~aiiG-p~~s~~~~~va~~~~~~~iP 123 (574)
....+++.+.+++ ++ .+.+. ++..+|+-.+++++++ ...+||| |..--.+..-...+...+||
T Consensus 115 Rsaaa~~~~~~~l-------~~---~I~aI---GNAPTAL~~Lleli~~g~~~PalVIG~PVGFVgaaESK~~L~~~~vP 181 (207)
T 1ou0_A 115 RSAAGIRIAMQDH-------RN---SVIVI---GNAPTALLEAMRMIEENGWYDIPIVGIPVGFINASKAKEGLVSSHIE 181 (207)
T ss_dssp HHHHHHHHHHHHC-------SS---EEEEE---SSCHHHHHHHHHHHHHHTCTTCCEEECCCCSHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHc-------CC---cEEEE---eCcHHHHHHHHHHHHcCCCCCcEEEEeCCCccCHHHHHHHHhcCCCC
Confidence 3456677777653 33 12221 6788899999999976 5888998 43322222222333445999
Q ss_pred EEeccc
Q 008205 124 LLSFAA 129 (574)
Q Consensus 124 ~Is~~~ 129 (574)
+|+..+
T Consensus 182 ~I~~~G 187 (207)
T 1ou0_A 182 YISVEG 187 (207)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 998643
No 279
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=28.71 E-value=1.1e+02 Score=29.56 Aligned_cols=93 Identities=10% Similarity=-0.011 Sum_probs=57.1
Q ss_pred CceEEecCChHHHHHHHHHHHHHcCC---eEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHH
Q 008205 140 PFFVRTTQSDLYQMAAIADIVDYFGW---RNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLL 216 (574)
Q Consensus 140 ~~~~r~~ps~~~~~~ai~~ll~~~~W---~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~ 216 (574)
|.-+...+... ..+.++++.++. +++.+|++..-.. ..+.+.++..|+.+.....+..+.+...+.+.++
T Consensus 28 p~~i~~G~g~l---~~l~~~l~~~g~~~~~~~liVtd~~~~~----~~l~~~L~~~g~~~~~f~~v~~~pt~~~v~~~~~ 100 (375)
T 3rf7_A 28 VPKMIFGRGSF---VQLDTVLEQERTDANDFVVFLVDDVHQH----KPLAARVPNKAHDLVIYVNVDDEPTTVQVDELTA 100 (375)
T ss_dssp CSCEEESTTGG---GGHHHHHHTTCCSTTCCEEEEEEGGGTT----SHHHHHSCCCTTSEEEEECCSSCCBHHHHHHHHH
T ss_pred CCeEEEcCCHH---HHHHHHHHHhcccCCCeEEEEECchhhh----hHHHHHHHhcCCeEEEEeCCCCCCCHHHHHHHHH
Confidence 44455554432 346677887764 7888888654322 1356677767776654444555566677777888
Q ss_pred HhhcCC---CeEEEEEeCh--HHHHHHH
Q 008205 217 TVSSMM---SRILILHTYD--IWGLEVL 239 (574)
Q Consensus 217 ~ik~~~---~~viil~~~~--~~~~~il 239 (574)
.+++.+ .+.||-.+.. -++..++
T Consensus 101 ~~~~~~~~~~D~IIavGGGS~iD~AK~i 128 (375)
T 3rf7_A 101 QVKAFNTKLPVSVVGLGGGSTMDLAKAV 128 (375)
T ss_dssp HHHHHCSSCCSEEEEEESHHHHHHHHHH
T ss_pred HHHHhCCCCCCEEEEeCCcHHHHHHHHH
Confidence 787766 8888887544 3344444
No 280
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=28.58 E-value=1.4e+02 Score=28.05 Aligned_cols=65 Identities=6% Similarity=-0.080 Sum_probs=40.8
Q ss_pred CCeEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe
Q 008205 164 GWRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT 230 (574)
Q Consensus 164 ~W~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~ 230 (574)
.-..++++..+ +++.....+.+.+.+++.|+.+..... . ..+.......++.+...+.+.||+..
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~-~~~~~~~~~~l~~l~~~~vdGiIi~~ 126 (349)
T 1jye_A 60 QSLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMV-E-RSGVEACKTAVHNLLAQRVSGLIINY 126 (349)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-C-SSSHHHHHHHHHHHHTTTCSCEEEES
T ss_pred CCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeC-C-CCcHHHHHHHHHHHHHCCCCEEEEec
Confidence 34578888865 234455677888888899988765321 1 11223345567777777788788763
No 281
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=28.42 E-value=61 Score=29.59 Aligned_cols=80 Identities=8% Similarity=-0.066 Sum_probs=46.1
Q ss_pred CCeEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHH
Q 008205 164 GWRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNA 241 (574)
Q Consensus 164 ~W~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~ 241 (574)
+=.+++++..+ +++.....+.+++.+++.|+.+..... ..+.......++.+...+.+.||+.........+++.
T Consensus 19 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~ 95 (293)
T 2iks_A 19 RTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACS---EDQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQR 95 (293)
T ss_dssp CCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSCTTCHHHHT
T ss_pred CCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcC---CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHH
Confidence 34578888754 334455667778888888887764321 1233334556777766778877776432211234455
Q ss_pred HHHCC
Q 008205 242 AKHLR 246 (574)
Q Consensus 242 a~~~g 246 (574)
+.+.|
T Consensus 96 ~~~~~ 100 (293)
T 2iks_A 96 WANDP 100 (293)
T ss_dssp TTTSS
T ss_pred HHhCC
Confidence 54444
No 282
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=28.36 E-value=1.7e+02 Score=26.35 Aligned_cols=120 Identities=13% Similarity=0.070 Sum_probs=65.3
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc--CcEEEEcCCChHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN--ETVAIIGPQFSVIA 110 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~--~v~aiiGp~~s~~~ 110 (574)
+||++.... ......-..+++.++++.+-.. .... +.....+...+.+.+.+++.. .+.||+..... .+
T Consensus 129 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~-~a 200 (289)
T 3g85_A 129 SAAAILTESLNDAMDNRNKGFIETCHKNGIKI------SENH-IIAAENSIHGGVDAAKKLMKLKNTPKALFCNSDS-IA 200 (289)
T ss_dssp BCEEEECCCSSHHHHHHHHHHHHHHHHTTCBC------CGGG-EEECCSSHHHHHHHHHHHTTSSSCCSEEEESSHH-HH
T ss_pred EEEEEeCCcccccHHHHHHHHHHHHHHcCCCC------Chhh-eeccCCCHHHHHHHHHHHHcCCCCCcEEEEcCCH-HH
Confidence 577776543 2223445678888887643211 1011 113344666777777888876 68899975443 33
Q ss_pred HHHHHhhccC--Ccc----EEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHH
Q 008205 111 HLVSHIANEF--QVP----LLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVD 161 (574)
Q Consensus 111 ~~va~~~~~~--~iP----~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~ 161 (574)
..+...+... .|| ++++...+..+.....|.+-.+..+...++...++++.
T Consensus 201 ~g~~~al~~~g~~vP~di~vig~d~~~~~~~~~~~p~lttv~~~~~~~g~~a~~~l~ 257 (289)
T 3g85_A 201 LGVISVLNKRQISIPDDIEIVAIGMNDREYTEFSTPPVTIVDIPIEEMAGTCISLVE 257 (289)
T ss_dssp HHHHHHHHHTTCCTTTTCEEEEEECSCHHHHHSSSSCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCceEEEEeCCCCcchhhccCCCCeEEcCCHHHHHHHHHHHHH
Confidence 3444444444 344 67654112222222234455666667777777777653
No 283
>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} SCOP: c.38.1.1
Probab=28.32 E-value=71 Score=26.60 Aligned_cols=80 Identities=10% Similarity=0.025 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC
Q 008205 152 QMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (574)
Q Consensus 152 ~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~ 231 (574)
.++.+..+.++++-+++.++- |........+.+.+.....|+.+.. + +.++....+++-+..+.++++++-+
T Consensus 15 HGQV~t~W~~~~~~~~IiVvn-D~vA~D~~~k~~lk~a~P~gvk~~i---~----sve~ai~~~~~~~~~~~~v~ll~k~ 86 (163)
T 1ble_A 15 HGQILTRWIKVHAADRIIVVS-DDIAQDEMRKTLILSVAPSNVKASA---V----SVSKMAKAFHSPRYEGVTAMLLFEN 86 (163)
T ss_dssp CTTHHHHHHHHHTCSEEEEEC-HHHHHCHHHHHHHHTSSCTTSEEEE---E----CHHHHHHHHHCSTTTTCEEEEEESS
T ss_pred chhheeeeccccCCCEEEEeC-ccccCCHHHHHHHHhhCCCCCeEEE---E----EHHHHHHHHhcccCCCceEEEEECC
Confidence 356778899999999998874 3222223455666666666877653 2 2344555555555567899999999
Q ss_pred hHHHHHHH
Q 008205 232 DIWGLEVL 239 (574)
Q Consensus 232 ~~~~~~il 239 (574)
+.++..+.
T Consensus 87 p~d~~~lv 94 (163)
T 1ble_A 87 PSDIVSLI 94 (163)
T ss_dssp SHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887764
No 284
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=28.31 E-value=1.1e+02 Score=28.17 Aligned_cols=79 Identities=6% Similarity=-0.107 Sum_probs=44.4
Q ss_pred EEEEEEEcCC-CCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe-ChHHHHHHHHHHHH
Q 008205 167 NVIALYVDDD-HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT-YDIWGLEVLNAAKH 244 (574)
Q Consensus 167 ~v~ii~~~~~-~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~-~~~~~~~il~~a~~ 244 (574)
+++++..+.. +.....+.+++.+++.|+.+.... +...+.......++.+...+.+.||+.. ........++++.+
T Consensus 3 ~Ig~i~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~--~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~ 80 (313)
T 2h3h_A 3 TIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFV--PQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALE 80 (313)
T ss_dssp EEEEECSCSSHHHHHHHHHHHHHHHHHTCEEEEEC--CSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHH
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHH
Confidence 4666654322 444556677777777887765432 1112333445566666667777777754 33333455666666
Q ss_pred CCC
Q 008205 245 LRM 247 (574)
Q Consensus 245 ~gm 247 (574)
.|+
T Consensus 81 ~~i 83 (313)
T 2h3h_A 81 MGI 83 (313)
T ss_dssp TTC
T ss_pred CCC
Confidence 554
No 285
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=28.10 E-value=1.5e+02 Score=20.87 Aligned_cols=41 Identities=17% Similarity=0.110 Sum_probs=29.5
Q ss_pred ChhhHHHHHHHhhcCCCeEEEE-E-eChHHHHHHHHHHHHCCC
Q 008205 207 SRNQIIDTLLTVSSMMSRILIL-H-TYDIWGLEVLNAAKHLRM 247 (574)
Q Consensus 207 ~~~~~~~~l~~ik~~~~~viil-~-~~~~~~~~il~~a~~~gm 247 (574)
...|+++.++.+|+.+...+++ . .+-.+...+-.+|++.|.
T Consensus 36 ssqdirdiiksmkdngkplvvfvngasqndvnefqneakkegv 78 (112)
T 2lnd_A 36 SSQDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGV 78 (112)
T ss_dssp SHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTC
T ss_pred chhhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCc
Confidence 5678999999999876554444 3 345667778888888774
No 286
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=28.03 E-value=1.4e+02 Score=23.66 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEE
Q 008205 150 LYQMAAIADIVDYFGWRNVIALY 172 (574)
Q Consensus 150 ~~~~~ai~~ll~~~~W~~v~ii~ 172 (574)
..|-..+.++.+..||.-+.++.
T Consensus 24 ~~Q~~~l~~~a~~~g~~~~~~~~ 46 (138)
T 3bvp_A 24 DEQIDRLTKYAEAMGWQVSDTYT 46 (138)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEEE
Confidence 44566666677767777555443
No 287
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=27.53 E-value=45 Score=30.03 Aligned_cols=84 Identities=11% Similarity=0.052 Sum_probs=49.2
Q ss_pred HHHHHHHHHH-----HcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeec---CCCCChhhHHHHHHHhhcCCC
Q 008205 152 QMAAIADIVD-----YFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPL---SPKGSRNQIIDTLLTVSSMMS 223 (574)
Q Consensus 152 ~~~ai~~ll~-----~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~---~~~~~~~~~~~~l~~ik~~~~ 223 (574)
-+..+++++. ...-++|.++..+. ....+.+.|++.|..+.....+ +.......+ .+.+.....
T Consensus 115 ~~e~L~~~l~~~~~~~~~~~~vL~~rg~~-----~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~---~~~l~~~~~ 186 (254)
T 4es6_A 115 DSEALLALPAFQDSLRVHDPKVLIMRGEG-----GREFLAERLRGQGVQVDYLPLYRRRAPDYPAGEL---LARVRAERL 186 (254)
T ss_dssp SHHHHHTCHHHHHHTCSSSCEEEEEECSS-----CCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHH---HHHHHHTTC
T ss_pred CHHHHHHhHhhcccccCCCCEEEEEcCCc-----cHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHH---HHHHHhCCC
Confidence 3567777664 34457887776443 3456778888889876544322 211222233 333444455
Q ss_pred eEEEEEeChHHHHHHHHHHHH
Q 008205 224 RILILHTYDIWGLEVLNAAKH 244 (574)
Q Consensus 224 ~viil~~~~~~~~~il~~a~~ 244 (574)
+ +|++.++..+..++..+.+
T Consensus 187 d-~v~ftS~s~v~~~~~~~~~ 206 (254)
T 4es6_A 187 N-GLVVSSGQGLQNLYQLAAA 206 (254)
T ss_dssp C-EEECCSHHHHHHHHHHHGG
T ss_pred C-EEEEcCHHHHHHHHHHhhH
Confidence 6 4556788888888877643
No 288
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=27.22 E-value=3.7e+02 Score=24.68 Aligned_cols=133 Identities=5% Similarity=-0.062 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHhHhcCcE-EEEcCC--ChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHH
Q 008205 81 YSRFLGMVEALTLLENETV-AIIGPQ--FSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIA 157 (574)
Q Consensus 81 ~~~~~a~~~~~~l~~~~v~-aiiGp~--~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~ 157 (574)
..+..+...+.+.++.|+. +|+... .......+...+.+.++.++.+.+. .+-+.. ....-+.|..
T Consensus 78 vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~viGPNc~--Gii~~~-~~~~~~~~~~-------- 146 (294)
T 2yv1_A 78 VPAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGVKIIGPNTP--GIASPK-VGKLGIIPME-------- 146 (294)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEECSSCC--EEEETT-TEEEECCCGG--------
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEcCCCc--eeeccC-cceeeecccC--------
Confidence 3556666677777788887 455443 2233567788888889988876543 222211 1111122221
Q ss_pred HHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCC-hhhHHHHHHHhhc-CCCeEEEEEeCh
Q 008205 158 DIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGS-RNQIIDTLLTVSS-MMSRILILHTYD 232 (574)
Q Consensus 158 ~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~-~~~~~~~l~~ik~-~~~~viil~~~~ 232 (574)
.+.--++++|.++.. ....+.+.+.+.|+-++....+-.... ..++.+.|+.+.+ .++++|+++...
T Consensus 147 ----~~~~G~va~vSqSG~----l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E~ 215 (294)
T 2yv1_A 147 ----VLKEGSVGMVSRSGT----LTYEIAHQIKKAGFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDETEAIVMIGEI 215 (294)
T ss_dssp ----GCCEEEEEEEESCSH----HHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEEES
T ss_pred ----CCCCCCEEEEECCHH----HHHHHHHHHHhCCCCeEEEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEee
Confidence 233457999986653 456677777788876666555543221 3467788888754 589999998764
No 289
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=26.87 E-value=1.4e+02 Score=24.84 Aligned_cols=62 Identities=6% Similarity=0.033 Sum_probs=40.9
Q ss_pred eEEEEEEEcCC-----CCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe
Q 008205 166 RNVIALYVDDD-----HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT 230 (574)
Q Consensus 166 ~~v~ii~~~~~-----~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~ 230 (574)
.++++|...|+ .-......+.+.+++.|..+.....++ .+ +.+...+++..+.+.++||..+
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~--Dd-~~i~~al~~a~~~~~DlVittG 74 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVA--DG-SPVGEALRKAIDDDVDVILTSG 74 (164)
T ss_dssp CEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEEC--SS-HHHHHHHHHHHHTTCSEEEEES
T ss_pred CEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeC--CH-HHHHHHHHHHHhCCCCEEEECC
Confidence 46777765542 112355678888888898877665555 34 6677777776555688888864
No 290
>1j3m_A The conserved hypothetical protein TT1751; X-RAY crystallography, structural genomics, riken structural genomics/proteomics initiative; 2.00A {Thermus thermophilus} SCOP: d.129.7.1
Probab=26.84 E-value=2.1e+02 Score=22.31 Aligned_cols=69 Identities=12% Similarity=0.079 Sum_probs=48.7
Q ss_pred CcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHH-h-hcCCCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEE
Q 008205 178 GRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLT-V-SSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWI 255 (574)
Q Consensus 178 g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~-i-k~~~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i 255 (574)
.....+++++.+.+.|+.|..... ....+++ + .+...-.|+.+|++..+..+++.....|+..+-.+.+
T Consensus 12 ~~e~~~~l~~al~~~Gf~v~~~id---------~~~~l~~k~g~~~~~~~il~~cnP~~a~~~l~~~p~~g~~lPcrv~V 82 (129)
T 1j3m_A 12 LAEARAQVEAALKEEGFGILTEID---------VAATLKAKLGLEKPPYLILGACNPNLAARALEALPEIGLLLPCNVVL 82 (129)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEE---------HHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHCGGGGGGCSEEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeC---------HHHHHHHhcCCCCCCeEEEEECCHHHHHHHHHhCHHHHhhcCcEEEE
Confidence 345678999999999998865432 2233322 1 2235567888999999999999988888877654444
No 291
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=26.63 E-value=8.9 Score=25.71 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=11.4
Q ss_pred EEEECCCCC-----CCCChHHHH
Q 008205 517 KLVPFGDGH-----NSPKRFDLL 534 (574)
Q Consensus 517 ~~~~~~dg~-----~~~~~~gli 534 (574)
-..++.||+ +.|.||-||
T Consensus 23 ~VQRvsdgkaaVLFEGGnWDKLV 45 (66)
T 2jz2_A 23 LVQRVSDGKAAVLFENGNWDKLV 45 (66)
T ss_dssp EEEEEETTEEEEEEESSSCEEEE
T ss_pred EEEEecCCcEEEEecCCCceeEE
Confidence 344566776 667887654
No 292
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=26.58 E-value=40 Score=32.50 Aligned_cols=73 Identities=8% Similarity=0.006 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh
Q 008205 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD 232 (574)
Q Consensus 154 ~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~ 232 (574)
..+.++++.+|.+++.+|++....+ ..+.+.+.++ .. +.+. .+.++.+.+...+.++.+++.+.+.||-.+..
T Consensus 26 ~~l~~~l~~~g~~rvliVtd~~~~~--~~~~v~~~L~--~~-~~f~-~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 98 (364)
T 3iv7_A 26 AFLKQEVERRGSAKVMVIAGEREMS--IAHKVASEIE--VA-IWHD-EVVMHVPIEVAERARAVATDNEIDLLVCVGGG 98 (364)
T ss_dssp HHHHHHHHHHTCSSEEEECCGGGHH--HHHHHTTTSC--CS-EEEC-CCCTTCBHHHHHHHHHHHHHTTCCEEEEEESH
T ss_pred HHHHHHHHHcCCCEEEEEECCCHHH--HHHHHHHHcC--CC-EEEc-ceecCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 4567888999999999998654321 2344444443 11 2222 23334556778888888888999988887554
No 293
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=26.38 E-value=1.1e+02 Score=27.82 Aligned_cols=80 Identities=6% Similarity=0.027 Sum_probs=47.3
Q ss_pred CCeEEEEEEEcC----CCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHH
Q 008205 164 GWRNVIALYVDD----DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVL 239 (574)
Q Consensus 164 ~W~~v~ii~~~~----~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il 239 (574)
+=+.|+++..+. ++.....+.+++.+++.|..+.....- .+.......++.+...+.+.||+...... ...+
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~ 82 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHI---HAKDSMVPIRYILETGSADGVIISKIEPN-DPRV 82 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBS---SGGGTTHHHHHHHHHTCCSEEEEESCCTT-CHHH
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCC---cchhHHHHHHHHHHcCCccEEEEecCCCC-cHHH
Confidence 335788887652 455667788888888889877653211 12222344455565677787777643221 2446
Q ss_pred HHHHHCCC
Q 008205 240 NAAKHLRM 247 (574)
Q Consensus 240 ~~a~~~gm 247 (574)
+.+.+.|+
T Consensus 83 ~~l~~~~i 90 (288)
T 3gv0_A 83 RFMTERNM 90 (288)
T ss_dssp HHHHHTTC
T ss_pred HHHhhCCC
Confidence 66666654
No 294
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=26.07 E-value=3.6e+02 Score=24.21 Aligned_cols=115 Identities=11% Similarity=0.079 Sum_probs=64.5
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-----CcEEEEcCCCh
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-----ETVAIIGPQFS 107 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-----~v~aiiGp~~s 107 (574)
+||.+.... ......-..+++.|+++. |.++. +.....+...+.+.+.+++.. .+.||+... .
T Consensus 133 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~--------g~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~-d 201 (295)
T 3hcw_A 133 ELIFITEKGNFEVSKDRIQGFETVASQF--------NLDYQ--IIETSNEREVILNYMQNLHTRLKDPNIKQAIISLD-A 201 (295)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHHHHT--------TCEEE--EEEECSCHHHHHHHHHHHHHHHTCTTSCEEEEESS-H
T ss_pred cEEEEcCCccchhHHHHHHHHHHHHHHc--------CCCee--EEeccCCHHHHHHHHHHHHhhcccCCCCcEEEECC-h
Confidence 678776543 222345578888888763 23344 223344556666666666653 688999743 3
Q ss_pred HHHHHHHHhhccCC--cc----EEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHH
Q 008205 108 VIAHLVSHIANEFQ--VP----LLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVD 161 (574)
Q Consensus 108 ~~~~~va~~~~~~~--iP----~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~ 161 (574)
..+..+...+.+.+ || ++++... .+.....|-+-.+..+...+++..++++.
T Consensus 202 ~~A~g~~~al~~~g~~vP~di~vig~D~~--~~~~~~~p~lttv~~~~~~~g~~a~~~l~ 259 (295)
T 3hcw_A 202 MLHLAILSVLYELNIEIPKDVMTATFNDS--YLTEIASPPQTCIDIKPRMLGQQAGSAIL 259 (295)
T ss_dssp HHHHHHHHHHHHTTCCTTTTEEEEEECCS--HHHHTSSSCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEEeCCh--hHHhhCCCCeeEEEECHHHHHHHHHHHHH
Confidence 44444455555443 44 5554321 12222235556666677778887777653
No 295
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=25.74 E-value=2.4e+02 Score=25.52 Aligned_cols=69 Identities=7% Similarity=-0.102 Sum_probs=45.8
Q ss_pred HHHcCCeEEEEEEEcC--CCCc-chHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC
Q 008205 160 VDYFGWRNVIALYVDD--DHGR-NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (574)
Q Consensus 160 l~~~~W~~v~ii~~~~--~~g~-~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~ 231 (574)
++.-+=+.|+++..+. .+.. ...+.+++.+++.|+.+..... ..+.......++.+...+.+.||+...
T Consensus 8 L~~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdGiIi~~~ 79 (301)
T 3miz_A 8 IRSSRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANT---GGSSEREVEIWKMFQSHRIDGVLYVTM 79 (301)
T ss_dssp ----CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred HhhCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHhCCCCEEEEecC
Confidence 3334456788888653 4556 7889999999999988765432 124444566777777788888887643
No 296
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=25.66 E-value=2e+02 Score=23.79 Aligned_cols=63 Identities=14% Similarity=0.197 Sum_probs=37.2
Q ss_pred EEEEEEEcCC-----CCcchHHHHHHH----HhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC
Q 008205 167 NVIALYVDDD-----HGRNGIAALGDK----LAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (574)
Q Consensus 167 ~v~ii~~~~~-----~g~~~~~~l~~~----~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~ 231 (574)
+++||...|+ .-......+.+. +++.|+.+.....++ .+.+.+...+++..+.+.++||..+.
T Consensus 7 ~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~--Dd~~~I~~~l~~a~~~~~DlVittGG 78 (167)
T 2g2c_A 7 KSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVP--EGYDTVVEAIATALKQGARFIITAGG 78 (167)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEEC--SSHHHHHHHHHHHHHTTCSEEEEESC
T ss_pred EEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeC--CCHHHHHHHHHHHHhCCCCEEEECCC
Confidence 5666664432 112344667777 888888777665565 35566777777765545788887643
No 297
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=25.48 E-value=55 Score=29.11 Aligned_cols=76 Identities=17% Similarity=0.122 Sum_probs=40.6
Q ss_pred HhHhcCcEEEEcCCChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEE
Q 008205 92 TLLENETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIAL 171 (574)
Q Consensus 92 ~l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii 171 (574)
.+.+.|+.+|+-+-.+... .+..+-...++|+|+. ..+.++-+...+-++|+++
T Consensus 71 ~L~~~g~~~iviaCNTa~~-~~~~l~~~~~iPvi~i-------------------------~~~~~~~a~~~~~~rVgvL 124 (231)
T 3ojc_A 71 SLKHAGAEVIVVCTNTMHK-VADDIEAACGLPLLHI-------------------------ADATAVQIKQQGIDKIGLL 124 (231)
T ss_dssp HHHHHTCCEEEECSSGGGG-GHHHHHHHHCSCBCCH-------------------------HHHHHHHHHHTTCCEEEEE
T ss_pred HHHhcCCCEEEEeCCchHH-HHHHHHHhCCCCEecc-------------------------HHHHHHHHHHcCCCEEEEE
Confidence 3444588888876555332 2344555667887753 1333333334566899998
Q ss_pred EEcCCCCcchHHHHHHHHhhc-CcEE
Q 008205 172 YVDDDHGRNGIAALGDKLAEK-RCRL 196 (574)
Q Consensus 172 ~~~~~~g~~~~~~l~~~~~~~-g~~v 196 (574)
......- ...+++.+++. |+.+
T Consensus 125 aT~~T~~---s~~y~~~l~~~~g~~v 147 (231)
T 3ojc_A 125 GTRYTME---QGFYRGRLTEKHGIEV 147 (231)
T ss_dssp SCHHHHH---STTTHHHHHHTTCCEE
T ss_pred cCHHHhh---chHHHHHHHhcCCCEE
Confidence 7543110 11234445555 7765
No 298
>1q9u_A Uncharacterized protein APC35924; structural genomics, Zn-binding proteins, PSI, protein structure initiative; HET: CSW CME; 1.80A {Geobacillus stearothermophilus} SCOP: d.129.7.1
Probab=25.00 E-value=2.5e+02 Score=21.93 Aligned_cols=69 Identities=10% Similarity=0.084 Sum_probs=49.0
Q ss_pred CcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhh-cC-CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEE
Q 008205 178 GRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVS-SM-MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWI 255 (574)
Q Consensus 178 g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik-~~-~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i 255 (574)
.....+++++.+.+.|+.|..... +...+++-- +. ..-.|+..|++..+..+++.-...|+..+-.+.|
T Consensus 15 ~~e~~~~l~~al~~~Gf~v~~~~d---------~~~~~~~~G~~~~~~~~il~~cnp~~a~~~l~~~p~~g~~lPcrv~v 85 (130)
T 1q9u_A 15 MNETIERLEESLKQEGFGVLWQFS---------VTEKLQEKGLDFSTPMVILEVCNPQEAARVLNENLLVGYFLPCKLVV 85 (130)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEE---------HHHHHHHTTCCCCSCEEEEEEECHHHHHHHHHHCGGGGGGCSEEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEC---------HHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHhCHHHHhhcCeEEEE
Confidence 345678999999999998865432 334444432 22 4557888899999999999988888877654444
No 299
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=24.99 E-value=2.8e+02 Score=23.08 Aligned_cols=49 Identities=8% Similarity=0.020 Sum_probs=33.0
Q ss_pred hHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhh-cCCCeEEEEEeC
Q 008205 181 GIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVS-SMMSRILILHTY 231 (574)
Q Consensus 181 ~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik-~~~~~viil~~~ 231 (574)
....+.+.+.+.|+.+.....++ .+...+...++... ....++||..+.
T Consensus 41 ng~~L~~~L~~~G~~v~~~~iV~--Dd~~~i~~al~~~~a~~~~DlVittGG 90 (178)
T 3iwt_A 41 SGDIIKQLLIENGHKIIGYSLVP--DDKIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEC--SCHHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred hHHHHHHHHHHCCCEEEEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEecCC
Confidence 34678888888999887776665 34455666666544 346788887643
No 300
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=24.99 E-value=3.3e+02 Score=23.34 Aligned_cols=85 Identities=9% Similarity=-0.058 Sum_probs=56.4
Q ss_pred eEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh----HHHHHHHHH
Q 008205 166 RNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD----IWGLEVLNA 241 (574)
Q Consensus 166 ~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~----~~~~~il~~ 241 (574)
.+|.+....++...-+..-+...++..|+.+.+- ..... ...+++.+++.++++|.+.+.. .....++++
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~L---G~~vp---~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~ 162 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNL---GVDIE---PGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDA 162 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEEC---CSSBC---HHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHH
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEEC---CCCCC---HHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHH
Confidence 4677777677777777888888999999988643 22122 3455566666689999887642 456777888
Q ss_pred HHHCCCCCCCeEEEE
Q 008205 242 AKHLRMMESGYVWIV 256 (574)
Q Consensus 242 a~~~gm~~~~~~~i~ 256 (574)
.++.|+...-.++++
T Consensus 163 l~~~~~~~~~~v~vG 177 (210)
T 1y80_A 163 LIAAGLRDRVKVIVG 177 (210)
T ss_dssp HHHTTCGGGCEEEEE
T ss_pred HHhcCCCCCCeEEEE
Confidence 888775322334444
No 301
>1f2v_A COBH, precorrin-8X methylmutase; alpha-beta WIND, doubly wound sheet, isomerase; 2.10A {Pseudomonas denitrificans} SCOP: c.23.17.1 PDB: 1i1h_A*
Probab=24.63 E-value=84 Score=27.51 Aligned_cols=65 Identities=18% Similarity=0.263 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc---CcEEEEc-CCC---hHHHHHHHHhhccC-
Q 008205 49 AKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN---ETVAIIG-PQF---SVIAHLVSHIANEF- 120 (574)
Q Consensus 49 ~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~---~v~aiiG-p~~---s~~~~~va~~~~~~- 120 (574)
...|++.+.+++. +- -+.+ ++..+|+-.+++++++ ...+||| |.. ...++ ..+ ...
T Consensus 126 saaa~~~~~~~~~-------~a--IvaI----GNAPTAL~~Lleli~~g~~~PalVIG~PVGFVgaaESK--e~L-~~~~ 189 (219)
T 1f2v_A 126 SAAALKLWSERLA-------GS--VVAI----GNAPTALFFLLEMLRDGAPKPAAILGMPVGFVGAAESK--DAL-AENS 189 (219)
T ss_dssp HHHGGGGGHHHHT-------TC--EEEE----CSCHHHHHHHHHHHHTTCCCCSEEEECCCSSSSHHHHH--HHH-HHCC
T ss_pred HHHHHHHHHHHcC-------Cc--EEEE----eCcHHHHHHHHHHHHcCCCCCCEEEEeCCCccCHHHHH--HHH-HhCC
Confidence 3566667777642 21 1222 6788899999999986 5788888 432 23333 222 334
Q ss_pred -CccEEeccc
Q 008205 121 -QVPLLSFAA 129 (574)
Q Consensus 121 -~iP~Is~~~ 129 (574)
+||+|+..+
T Consensus 190 ~~vP~I~~~G 199 (219)
T 1f2v_A 190 YGVPFAIVRG 199 (219)
T ss_dssp TTCCEEEECT
T ss_pred CCCCEEEEeC
Confidence 799998543
No 302
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=24.46 E-value=2.9e+02 Score=22.60 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=45.7
Q ss_pred ecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCe
Q 008205 145 TTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSR 224 (574)
Q Consensus 145 ~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~ 224 (574)
..+....-..++.++++.....++.|+. +. ......+.+.+...|+.+.. +....+..+-...++..++...+
T Consensus 14 ~~~~~~~K~~~L~~ll~~~~~~~~lVF~-~~---~~~~~~l~~~L~~~~~~~~~---~~g~~~~~~R~~~~~~f~~g~~~ 86 (175)
T 2rb4_A 14 LCEHRKDKYQALCNIYGSITIGQAIIFC-QT---RRNAKWLTVEMIQDGHQVSL---LSGELTVEQRASIIQRFRDGKEK 86 (175)
T ss_dssp ECSSHHHHHHHHHHHHTTSCCSEEEEEC-SC---HHHHHHHHHHHHTTTCCEEE---ECSSCCHHHHHHHHHHHHTTSCS
T ss_pred EcCChHhHHHHHHHHHHhCCCCCEEEEE-CC---HHHHHHHHHHHHHcCCcEEE---EeCCCCHHHHHHHHHHHHcCCCe
Confidence 4455554567888888888777766655 32 23567778888887765543 22223344555666667655555
Q ss_pred EEE
Q 008205 225 ILI 227 (574)
Q Consensus 225 vii 227 (574)
++|
T Consensus 87 vLv 89 (175)
T 2rb4_A 87 VLI 89 (175)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
No 303
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=24.34 E-value=1e+02 Score=27.57 Aligned_cols=78 Identities=9% Similarity=-0.040 Sum_probs=46.5
Q ss_pred eEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHH
Q 008205 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAK 243 (574)
Q Consensus 166 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~ 243 (574)
+.|+++..+ +++.....+.+++.+++.|+.+.... ...+.......++.+...+.+.||+...... ...++.+.
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~l~ 79 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGY---SDYSIEQEEKLLSTFLESRPAGVVLFGSEHS-QRTHQLLE 79 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEE---CTTCHHHHHHHHHHHHTSCCCCEEEESSCCC-HHHHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEc---CCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHHH
Confidence 467888754 33455667788888888998765432 1123334456677777777887777643211 23455555
Q ss_pred HCCC
Q 008205 244 HLRM 247 (574)
Q Consensus 244 ~~gm 247 (574)
+.|.
T Consensus 80 ~~~i 83 (275)
T 3d8u_A 80 ASNT 83 (275)
T ss_dssp HHTC
T ss_pred hCCC
Confidence 5453
No 304
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=24.17 E-value=4.2e+02 Score=24.31 Aligned_cols=132 Identities=7% Similarity=-0.067 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHhHhcCcE-EEEcCC--ChHHHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHH
Q 008205 82 SRFLGMVEALTLLENETV-AIIGPQ--FSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIAD 158 (574)
Q Consensus 82 ~~~~a~~~~~~l~~~~v~-aiiGp~--~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ 158 (574)
.+..+...+.+.++.|+. +|++.. .......+...+.+.++.++.+.+. .+-+.. ....-+.|..
T Consensus 80 p~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~viGPNc~--Gii~~~-~~~~~~~~~~--------- 147 (297)
T 2yv2_A 80 PAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGATIIGPNCP--GAITPG-QAKVGIMPGH--------- 147 (297)
T ss_dssp CGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEECSSSC--EEEETT-TEEEESCCGG---------
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEcCCCC--eeEccc-ccceeecccC---------
Confidence 455566667777777877 454432 2233567788888889988876543 222111 1111122221
Q ss_pred HHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCC-hhhHHHHHHHhhc-CCCeEEEEEeCh
Q 008205 159 IVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGS-RNQIIDTLLTVSS-MMSRILILHTYD 232 (574)
Q Consensus 159 ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~-~~~~~~~l~~ik~-~~~~viil~~~~ 232 (574)
.+.--++++|.++.. ....+.+.+.+.|+-++....+-.... ..++.+.|+.+.+ .++++|+++...
T Consensus 148 ---~~~~G~va~vSqSG~----l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E~ 216 (297)
T 2yv2_A 148 ---IFKEGGVAVVSRSGT----LTYEISYMLTRQGIGQSTVIGIGGDPIVGLSFTEALKLFQEDPQTEALVLIGEI 216 (297)
T ss_dssp ---GCCEEEEEEEESCHH----HHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEECS
T ss_pred ---CCCCCCEEEEECCHH----HHHHHHHHHHHcCCCeeEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEee
Confidence 223457999985553 455677777778876666555543221 3467788888754 589999999874
No 305
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=24.14 E-value=1.4e+02 Score=27.51 Aligned_cols=52 Identities=19% Similarity=0.096 Sum_probs=38.7
Q ss_pred EEEecCCCCHHHHHHHH-HHhHhc-CcEEEEcCCChHHHHHHHHhhccCCccEE
Q 008205 74 LTVHDTNYSRFLGMVEA-LTLLEN-ETVAIIGPQFSVIAHLVSHIANEFQVPLL 125 (574)
Q Consensus 74 ~~~~d~~~~~~~a~~~~-~~l~~~-~v~aiiGp~~s~~~~~va~~~~~~~iP~I 125 (574)
+...|+=|+..+--+.+ .++..+ .+..|+|...|+-+..+..+|...+.|..
T Consensus 186 ~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty 239 (297)
T 3dnf_A 186 VKVINTICNATSLRQESVKKLAPEVDVMIIIGGKNSGNTRRLYYISKELNPNTY 239 (297)
T ss_dssp EEEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTTCHHHHHHHHHHHHHCSSEE
T ss_pred CCCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCCCchhHHHHHHHHhcCCCEE
Confidence 34678878776654444 445444 78889999999999999999998887744
No 306
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=23.98 E-value=1.4e+02 Score=27.68 Aligned_cols=80 Identities=9% Similarity=-0.077 Sum_probs=48.8
Q ss_pred CCeEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHH
Q 008205 164 GWRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNA 241 (574)
Q Consensus 164 ~W~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~ 241 (574)
+=..++++..+ +++.....+.+++.+++.|+.+..... ..+.......++.+...+.+.||+...... ...+..
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 137 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANS---DNDVEKEEKVLETFLSKQVDGIVYMGSSLD-EKIRTS 137 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECSSCCC-HHHHHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEEC---CCChHHHHHHHHHHHhCCCCEEEEeCCCCC-HHHHHH
Confidence 34578888864 345556777888888899988765421 123344456677777778888887653211 123445
Q ss_pred HHHCCC
Q 008205 242 AKHLRM 247 (574)
Q Consensus 242 a~~~gm 247 (574)
+.+.|.
T Consensus 138 l~~~~i 143 (332)
T 2o20_A 138 LKNSRT 143 (332)
T ss_dssp HHHHCC
T ss_pred HHhCCC
Confidence 545443
No 307
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=23.77 E-value=1.1e+02 Score=28.06 Aligned_cols=79 Identities=10% Similarity=-0.018 Sum_probs=46.8
Q ss_pred eEEEEEEEcC--CCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh-HHHHHHHHHH
Q 008205 166 RNVIALYVDD--DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEVLNAA 242 (574)
Q Consensus 166 ~~v~ii~~~~--~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~-~~~~~il~~a 242 (574)
.+|+++..+. .+.......+++.+++.|+.+..... ..+.......++.+...+.+.||+.... ......++.+
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG---QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEA 79 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHH
Confidence 4677777542 34445567778888888987765321 1233344556677766678877776433 2223456666
Q ss_pred HHCCC
Q 008205 243 KHLRM 247 (574)
Q Consensus 243 ~~~gm 247 (574)
.+.|+
T Consensus 80 ~~~~i 84 (306)
T 2vk2_A 80 KDAEI 84 (306)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 66554
No 308
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=23.47 E-value=4.5e+02 Score=24.37 Aligned_cols=133 Identities=17% Similarity=0.245 Sum_probs=73.1
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEec-CCCCHHHHHHHHHHhHhc--CcEEEEcCCChHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHD-TNYSRFLGMVEALTLLEN--ETVAIIGPQFSVIA 110 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d-~~~~~~~a~~~~~~l~~~--~v~aiiGp~~s~~~ 110 (574)
.++.+|-..+ -+.+.+|+.|+.++ +|..+.+...+ ++-.--+.++-..+.++. .++++=.+...
T Consensus 46 ~l~~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~~s~~~kgEsl~DTarvls~~~D~iviR~~~~~--- 112 (308)
T 1ml4_A 46 ILATLFFEPS---TRTRLSFESAMHRL-------GGAVIGFAEASTSSVKKGESLRDTIKTVEQYCDVIVIRHPKEG--- 112 (308)
T ss_dssp EEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEESCGGGSGGGGTCCHHHHHHHHTTTCSEEEEEESSTT---
T ss_pred EEEEEecCCC---chHHHHHHHHHHHh-------CCeEEEeCCCccccccCCCCHHHHHHHHHHhCcEEEEecCChh---
Confidence 5888987765 37899999999985 44444443333 110111222333344444 33333344332
Q ss_pred HHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcC-C--eEEEEEEEcCCCCcchHHH
Q 008205 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG-W--RNVIALYVDDDHGRNGIAA 184 (574)
Q Consensus 111 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~-W--~~v~ii~~~~~~g~~~~~~ 184 (574)
.+..++...++|+|.-+..+ ...| .++++|++ +++| + .+|+++. |..++ .....
T Consensus 113 -~~~~la~~~~vPVINag~g~-----~~HP------------tQ~LaDl~Ti~e~~g~l~gl~va~vG-D~~~~-rva~S 172 (308)
T 1ml4_A 113 -AARLAAEVAEVPVINAGDGS-----NQHP------------TQTLLDLYTIKKEFGRIDGLKIGLLG-DLKYG-RTVHS 172 (308)
T ss_dssp -HHHHHHHTCSSCEEEEEETT-----SCCH------------HHHHHHHHHHHHHSSCSSSEEEEEES-CTTTC-HHHHH
T ss_pred -HHHHHHHhCCCCEEeCccCC-----ccCc------------HHHHHHHHHHHHHhCCCCCeEEEEeC-CCCcC-chHHH
Confidence 23455566789999843212 1112 36778764 5565 2 4666664 22122 35677
Q ss_pred HHHHHhhcCcEEEEE
Q 008205 185 LGDKLAEKRCRLSHK 199 (574)
Q Consensus 185 l~~~~~~~g~~v~~~ 199 (574)
+...+...|.++...
T Consensus 173 l~~~~~~~G~~v~~~ 187 (308)
T 1ml4_A 173 LAEALTFYDVELYLI 187 (308)
T ss_dssp HHHHGGGSCEEEEEE
T ss_pred HHHHHHHCCCEEEEE
Confidence 777888888877654
No 309
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=23.37 E-value=1.1e+02 Score=29.23 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=24.3
Q ss_pred CCCeEEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC
Q 008205 29 IPPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTN 80 (574)
Q Consensus 29 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~ 80 (574)
...++++|...|.+.. ...+++.-.+.+++.. +| ++++.++...
T Consensus 32 ~~~~l~~~~~~~~~~~----~~~~~~~fa~~v~e~t---~G-~v~i~v~~~g 75 (361)
T 2zzv_A 32 RRYRWRIQTAWDAGTV----GYSLFQKFTERVKELT---DG-QLEVQPFPAG 75 (361)
T ss_dssp CCEEEEEEESSCTTSH----HHHHHHHHHHHHHHHT---TT-SEEEEEECTT
T ss_pred cceEEEEeccCCCCCc----hhHHHHHHHHHHHHhc---CC-eEEEEEeCCC
Confidence 4457889887766532 2233344446666543 22 4666666553
No 310
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=23.30 E-value=1.4e+02 Score=26.92 Aligned_cols=67 Identities=7% Similarity=0.007 Sum_probs=44.4
Q ss_pred HHcCCeEEEEEEEc--CCCCcchHHHHHHHHhhcCcE-EEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe
Q 008205 161 DYFGWRNVIALYVD--DDHGRNGIAALGDKLAEKRCR-LSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT 230 (574)
Q Consensus 161 ~~~~W~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~-v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~ 230 (574)
+.-+=+.++++..+ +++.....+.+++.+++.|+. +... ....+.......++.+...+.+.||+..
T Consensus 6 ~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 6 YQKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISF---STNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp --CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE---CSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred hcCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEE---eCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 33445678888865 345556778888888899988 6543 2123444455667778778888888876
No 311
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=23.27 E-value=2.7e+02 Score=26.06 Aligned_cols=75 Identities=11% Similarity=-0.046 Sum_probs=46.9
Q ss_pred eEEEEEEEcCCCCc-chHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHHH
Q 008205 166 RNVIALYVDDDHGR-NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKH 244 (574)
Q Consensus 166 ~~v~ii~~~~~~g~-~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~~ 244 (574)
+++.+|+ +...|. ...+.+.+.+++.|+.+.....- ...+.....++....+.+.||+.+.......++..+.+
T Consensus 30 ~~~~vi~-Np~sg~~~~~~~i~~~l~~~g~~~~~~~t~----~~~~~~~~~~~~~~~~~d~vvv~GGDGTl~~v~~~l~~ 104 (332)
T 2bon_A 30 PASLLIL-NGKSTDNLPLREAIMLLREEGMTIHVRVTW----EKGDAARYVEEARKFGVATVIAGGGDGTINEVSTALIQ 104 (332)
T ss_dssp CCEEEEE-CSSSTTCHHHHHHHHHHHTTTCCEEEEECC----STTHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHH
T ss_pred ceEEEEE-CCCCCCCchHHHHHHHHHHcCCcEEEEEec----CcchHHHHHHHHHhcCCCEEEEEccchHHHHHHHHHhh
Confidence 5788887 322222 45667888888888876554322 12233444444444567788888777778888887775
Q ss_pred C
Q 008205 245 L 245 (574)
Q Consensus 245 ~ 245 (574)
.
T Consensus 105 ~ 105 (332)
T 2bon_A 105 C 105 (332)
T ss_dssp C
T ss_pred c
Confidence 3
No 312
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=23.26 E-value=2.9e+02 Score=25.57 Aligned_cols=131 Identities=13% Similarity=0.077 Sum_probs=72.2
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEec-C---CCCH-HHHHHHHHHhHhcCcEEEEcCCChH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHD-T---NYSR-FLGMVEALTLLENETVAIIGPQFSV 108 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d-~---~~~~-~~a~~~~~~l~~~~v~aiiGp~~s~ 108 (574)
.++.+|-..+ -+.+.+|+.|+.++ +|..+.+...+ + .+.+ ..+++.+..+ . .++++=.+....
T Consensus 40 ~~~~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~~s~~~kgEsl~DTarvls~~-~-D~iviR~~~~~~ 107 (299)
T 1pg5_A 40 TISIAFFEPS---TRTYLSFQKAIINL-------GGDVIGFSGEESTSVAKGENLADTIRMLNNY-S-DGIVMRHKYDGA 107 (299)
T ss_dssp EEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEEECC-------CCCHHHHHHHHHHH-C-SEEEEEESSBTH
T ss_pred EEEEEecCCC---cchHHhHHHHHHHh-------CCEEEEeCCCCcccccCCCCHHHHHHHHHHh-C-CEEEEeCCChhH
Confidence 6899997765 47899999999985 44444443333 1 1222 2233333333 2 344444554332
Q ss_pred HHHHHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcC---CeEEEEEEEcCCCCcchH
Q 008205 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG---WRNVIALYVDDDHGRNGI 182 (574)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~---W~~v~ii~~~~~~g~~~~ 182 (574)
+..++...++|+|.-+-++ ...| .++++|++ +++| -.+++++. |..++ ...
T Consensus 108 ----~~~la~~~~vPVINaG~g~-----~~HP------------tQ~LaDl~Ti~e~~g~l~gl~va~vG-D~~~~-rva 164 (299)
T 1pg5_A 108 ----SRFASEISDIPVINAGDGK-----HEHP------------TQAVIDIYTINKHFNTIDGLVFALLG-DLKYA-RTV 164 (299)
T ss_dssp ----HHHHHHHCSSCEEEEEETT-----TBCH------------HHHHHHHHHHHHHHSCSTTCEEEEEE-CCSSC-HHH
T ss_pred ----HHHHHHhCCCCEEeCCCCC-----CcCc------------HHHHHHHHHHHHHhCCcCCcEEEEEC-CCCCC-chH
Confidence 3444566789999843222 1112 36777764 4554 25677776 22222 355
Q ss_pred HHHHHHHhhc-CcEEEEE
Q 008205 183 AALGDKLAEK-RCRLSHK 199 (574)
Q Consensus 183 ~~l~~~~~~~-g~~v~~~ 199 (574)
..+...+... |.++...
T Consensus 165 ~Sl~~~~~~~~g~~v~~~ 182 (299)
T 1pg5_A 165 NSLLRILTRFRPKLVYLI 182 (299)
T ss_dssp HHHHHHGGGSCCSEEEEE
T ss_pred HHHHHHHHhCCCCEEEEE
Confidence 6777777777 8776543
No 313
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=23.25 E-value=3.8e+02 Score=23.54 Aligned_cols=115 Identities=12% Similarity=-0.014 Sum_probs=59.3
Q ss_pred EEEEEeccC-----Cccch-hHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc--CcEEEEcCC
Q 008205 34 NIGAVFALN-----STIGK-VAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN--ETVAIIGPQ 105 (574)
Q Consensus 34 ~IG~l~~~~-----~~~g~-~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~--~v~aiiGp~ 105 (574)
+||++.... ..... .-..+++.++++.+-.. ... .. .....+...+.+.+.+++.. .+.+|+...
T Consensus 116 ~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~---~~~---~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 188 (276)
T 2h0a_A 116 IFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPF---SPD---RL-YITRHSQEGGRLALRHFLEKASPPLNVFAGA 188 (276)
T ss_dssp EEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCC---CGG---GE-EEECSSHHHHHHHHHHHHTTCCSSEEEECSS
T ss_pred eEEEEecCcccccccchhHHHHHHHHHHHHHHcCCCC---ChH---He-eecCCChHHHHHHHHHHHhCCCCCCEEEECC
Confidence 788887553 33445 56788888888743111 111 11 12233556666677788875 489999654
Q ss_pred ChHHHHHHHHhhccCC--cc----EEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH
Q 008205 106 FSVIAHLVSHIANEFQ--VP----LLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV 160 (574)
Q Consensus 106 ~s~~~~~va~~~~~~~--iP----~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll 160 (574)
. ..+..+...+...+ || ++++.... .... .. +..+..+...++...++++
T Consensus 189 d-~~a~g~~~al~~~g~~vP~di~vvg~d~~~--~~~~-~~-lttv~~~~~~~g~~a~~~l 244 (276)
T 2h0a_A 189 D-QVALGVLEEAVRLGLTPGRDVRVLGFDGHP--FAEE-AG-LSTIAQPVEAMGARAAQLL 244 (276)
T ss_dssp H-HHHHHHHHHHHTTSCTTTTSEEEEEESCCT--HHHH-HT-CEEEECCHHHHHHHHHHHH
T ss_pred c-HHHHHHHHHHHHcCCCCCCCeEEEEeCCCc--hhhh-cc-eeEecCCHHHHHHHHHHHH
Confidence 4 33444444454443 45 55543221 1110 01 3444445555665555543
No 314
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=22.98 E-value=2.4e+02 Score=25.22 Aligned_cols=77 Identities=9% Similarity=-0.025 Sum_probs=47.0
Q ss_pred eEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHH
Q 008205 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAK 243 (574)
Q Consensus 166 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~ 243 (574)
++++++..+ +++.....+.+++.+++.|+.+..... ..+.......++.+...+.+.||+...... ...++.+.
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~l~ 84 (285)
T 3c3k_A 9 GMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNT---ESDLARSRSCLTLLSGKMVDGVITMDALSE-LPELQNII 84 (285)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHTHHHHTTCCSEEEECCCGGG-HHHHHHHH
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHHh
Confidence 578888754 345556677888888889988765321 123333456677777778888888643222 13345554
Q ss_pred HCCC
Q 008205 244 HLRM 247 (574)
Q Consensus 244 ~~gm 247 (574)
.|.
T Consensus 85 -~~i 87 (285)
T 3c3k_A 85 -GAF 87 (285)
T ss_dssp -TTS
T ss_pred -cCC
Confidence 443
No 315
>3p3v_A PTS system, N-acetylgalactosamine-specific IIB CO; PTS IIB component, phosphotransferase, sugar transport, STRU genomics; HET: PGE; 1.65A {Streptococcus pyogenes serotype M1} SCOP: c.38.1.0
Probab=22.78 E-value=99 Score=25.71 Aligned_cols=79 Identities=14% Similarity=0.055 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC
Q 008205 152 QMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (574)
Q Consensus 152 ~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~ 231 (574)
.++ +..+.++++-+++.++- |........+.+.+.....|+++.. + +.++....+++-+ .+.++++++-+
T Consensus 18 HGQ-~~~W~k~~~~~~IiVvn-D~vA~D~~~k~~lk~A~P~gvk~~i---~----sve~ai~~~~~~~-~~~~v~il~k~ 87 (163)
T 3p3v_A 18 HGQ-GQLWVKFLNCNTVIVAN-DAVSEDKIQQSLMKTVIPSSIAIRF---F----SIQKVIDIIHKAS-PAQSIFIVVKD 87 (163)
T ss_dssp GST-HHHHHHHTTCSEEEEEC-HHHHHCHHHHHHHGGGSCTTSEEEE---E----CHHHHHHHGGGCC-TTCEEEEEESS
T ss_pred hhh-hhhhhhhcCCCEEEEEc-ccccCCHHHHHHHHhhCCCCceEEE---E----EHHHHHHHHhccC-CCceEEEEECC
Confidence 456 78899999999998874 3222223455555555566877653 2 2233444444433 56788999989
Q ss_pred hHHHHHHHH
Q 008205 232 DIWGLEVLN 240 (574)
Q Consensus 232 ~~~~~~il~ 240 (574)
+.++.++++
T Consensus 88 p~d~~~lv~ 96 (163)
T 3p3v_A 88 LQDAKLLVE 96 (163)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887754
No 316
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=22.69 E-value=1.4e+02 Score=28.12 Aligned_cols=78 Identities=6% Similarity=-0.038 Sum_probs=47.4
Q ss_pred eEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHH
Q 008205 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAK 243 (574)
Q Consensus 166 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~ 243 (574)
+.++++..+ +++.....+.+++.+++.|+.+..... . .+.......++.+...+.+.||+...... ...++.+.
T Consensus 67 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~l~ 142 (348)
T 3bil_A 67 NTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNS-N--EDATTMSGSLEFLTSHGVDGIICVPNEEC-ANQLEDLQ 142 (348)
T ss_dssp -CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEEC-T--TCHHHHHHHHHHHHHTTCSCEEECCCGGG-HHHHHHHH
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC-C--CCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHHH
Confidence 468888754 344556677888888889987765321 1 23334456677777777887877654322 24556666
Q ss_pred HCCC
Q 008205 244 HLRM 247 (574)
Q Consensus 244 ~~gm 247 (574)
+.|+
T Consensus 143 ~~~i 146 (348)
T 3bil_A 143 KQGM 146 (348)
T ss_dssp HC-C
T ss_pred hCCC
Confidence 6554
No 317
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=22.65 E-value=93 Score=28.25 Aligned_cols=78 Identities=10% Similarity=0.055 Sum_probs=41.3
Q ss_pred eEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHH
Q 008205 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAK 243 (574)
Q Consensus 166 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~ 243 (574)
++|+++..+ +++.....+.+++.+++.|+.+... +....+.......++.+...+.+.||+...... ...++.+.
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~l~ 85 (290)
T 3clk_A 9 NVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIV--YSGSADPEEQKHALLTAIERPVMGILLLSIALT-DDNLQLLQ 85 (290)
T ss_dssp CEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEE--C----------CHHHHHHSSCCSEEEEESCC-----CHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEE--eCCCCCHHHHHHHHHHHHhcCCCEEEEecccCC-HHHHHHHH
Confidence 467888753 3455566778888888888876543 011112222334566666677888877643322 23455555
Q ss_pred HCC
Q 008205 244 HLR 246 (574)
Q Consensus 244 ~~g 246 (574)
+.|
T Consensus 86 ~~~ 88 (290)
T 3clk_A 86 SSD 88 (290)
T ss_dssp CC-
T ss_pred hCC
Confidence 544
No 318
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=22.63 E-value=1.1e+02 Score=27.86 Aligned_cols=78 Identities=6% Similarity=-0.078 Sum_probs=45.8
Q ss_pred eEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHH---HHHHhhcCCCeEEEEEeChHHHHHHHH
Q 008205 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIID---TLLTVSSMMSRILILHTYDIWGLEVLN 240 (574)
Q Consensus 166 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~---~l~~ik~~~~~viil~~~~~~~~~il~ 240 (574)
..++++..+ +++.....+.+++.+++.|+.+.... .. .+...... .++.+...+.+.||+...... ...++
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~ 84 (290)
T 2rgy_A 9 GIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVAT-GC--GESTPREQALEAVRFLIGRDCDGVVVISHDLH-DEDLD 84 (290)
T ss_dssp CEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEEC-CC--SSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC-HHHHH
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEe-CC--CchhhhhhHHHHHHHHHhcCccEEEEecCCCC-HHHHH
Confidence 567887754 33455667788888888888775432 11 22223344 677777777888877643222 23455
Q ss_pred HHHHCCC
Q 008205 241 AAKHLRM 247 (574)
Q Consensus 241 ~a~~~gm 247 (574)
.+.+.|+
T Consensus 85 ~l~~~~i 91 (290)
T 2rgy_A 85 ELHRMHP 91 (290)
T ss_dssp HHHHHCS
T ss_pred HHhhcCC
Confidence 5555553
No 319
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=22.52 E-value=3.8e+02 Score=23.21 Aligned_cols=86 Identities=7% Similarity=0.013 Sum_probs=57.1
Q ss_pred eEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEE--EeCh----HHHHHHH
Q 008205 166 RNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILIL--HTYD----IWGLEVL 239 (574)
Q Consensus 166 ~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil--~~~~----~~~~~il 239 (574)
.++.+.....+...-+..-+...++..|+++.+- ..+.. ...+++.+++.++++|.+ .+.. .....++
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~L---G~~vp---~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i 166 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDL---GVDVL---NENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLM 166 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEEC---CSSCC---HHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHH
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEc---CCCCC---HHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHH
Confidence 4666666666666777888888999999998643 22222 345677777888999988 5433 3356777
Q ss_pred HHHHHCCCCCCCeEEEEe
Q 008205 240 NAAKHLRMMESGYVWIVT 257 (574)
Q Consensus 240 ~~a~~~gm~~~~~~~i~~ 257 (574)
++.++.|+...-.+|++.
T Consensus 167 ~~l~~~~~~~~v~v~vGG 184 (215)
T 3ezx_A 167 DRLNEEKLRDSVKCMFGG 184 (215)
T ss_dssp HHHHHTTCGGGSEEEEES
T ss_pred HHHHHcCCCCCCEEEEEC
Confidence 888888763223355544
No 320
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=21.89 E-value=1.6e+02 Score=27.22 Aligned_cols=77 Identities=10% Similarity=0.016 Sum_probs=46.5
Q ss_pred eEEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHHHHHH
Q 008205 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAK 243 (574)
Q Consensus 166 ~~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il~~a~ 243 (574)
..++++..+ +++.....+.+++.+++.|+.+.... . ..+.......++.+...+.+.||+....... ..++.+.
T Consensus 61 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~-~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~l~ 136 (332)
T 2hsg_A 61 TTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSN--S-DQNQDKELHLLNNMLGKQVDGIIFMSGNVTE-EHVEELK 136 (332)
T ss_dssp CEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEE--C-CSHHHHHHHHHHHTSCCSSCCEEECCSSCCH-HHHHHHT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEe--C-CCChHHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHH
Confidence 578888754 45556677888888888898776532 1 1222334556777777778877776432211 3455555
Q ss_pred HCC
Q 008205 244 HLR 246 (574)
Q Consensus 244 ~~g 246 (574)
+.|
T Consensus 137 ~~~ 139 (332)
T 2hsg_A 137 KSP 139 (332)
T ss_dssp TSS
T ss_pred hCC
Confidence 544
No 321
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=21.88 E-value=4.4e+02 Score=23.69 Aligned_cols=85 Identities=7% Similarity=-0.051 Sum_probs=58.3
Q ss_pred HHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe---Ch
Q 008205 156 IADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT---YD 232 (574)
Q Consensus 156 i~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~---~~ 232 (574)
++++.+ -|-.=+++++ |..|..+..+.++..-+...+.|.....+- + . -++.+-+..+++.|++.+ +.
T Consensus 69 iA~~~~-~GA~aiSVLT-d~~~F~Gs~~~L~~vr~~v~lPvLrKDFii---d--~--yQI~eAr~~GADaILLI~a~L~~ 139 (258)
T 4a29_A 69 YAKFME-RYAVGLSITT-EEKYFNGSYETLRKIASSVSIPILMSDFIV---K--E--SQIDDAYNLGADTVLLIVKILTE 139 (258)
T ss_dssp HHHHHT-TTCSEEEEEC-CSTTTCCCHHHHHHHHTTCSSCEEEESCCC---S--H--HHHHHHHHHTCSEEEEEGGGSCH
T ss_pred HHHHHh-CCCeEEEEeC-CCCCCCCCHHHHHHHHHhcCCCEeeccccc---c--H--HHHHHHHHcCCCeeehHHhhcCH
Confidence 344443 3667788887 555777777888776666677775544332 2 1 356667778999999875 45
Q ss_pred HHHHHHHHHHHHCCCCC
Q 008205 233 IWGLEVLNAAKHLRMME 249 (574)
Q Consensus 233 ~~~~~il~~a~~~gm~~ 249 (574)
.....+...|.++||..
T Consensus 140 ~~l~~l~~~A~~lGl~~ 156 (258)
T 4a29_A 140 RELESLLEYARSYGMEP 156 (258)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhHHH
Confidence 77889999999999863
No 322
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=21.78 E-value=2.2e+02 Score=23.88 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=24.1
Q ss_pred hHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEE
Q 008205 181 GIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILH 229 (574)
Q Consensus 181 ~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~ 229 (574)
....+.+.+.+.|+.+.....++ .+...+...+++..+ ..++||..
T Consensus 24 N~~~l~~~L~~~G~~v~~~~iv~--Dd~~~I~~~l~~a~~-~~DlVitt 69 (172)
T 3kbq_A 24 NAAFIGNFLTYHGYQVRRGFVVM--DDLDEIGWAFRVALE-VSDLVVSS 69 (172)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEC--SCHHHHHHHHHHHHH-HCSEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEEEeC--CCHHHHHHHHHHHHh-cCCEEEEc
Confidence 44556666666676665554444 234445555544432 24555554
No 323
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=21.66 E-value=4.7e+02 Score=24.01 Aligned_cols=114 Identities=15% Similarity=0.064 Sum_probs=66.9
Q ss_pred EEEEEeccC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEec-CCCCHHHHHHHHHHhHhcC-cEEEEcCCChHHH
Q 008205 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHD-TNYSRFLGMVEALTLLENE-TVAIIGPQFSVIA 110 (574)
Q Consensus 34 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d-~~~~~~~a~~~~~~l~~~~-v~aiiGp~~s~~~ 110 (574)
+||++.... ......-..+++.|+++. |.. .+.. ...+...+.+.+.+++..+ +.||+..... .+
T Consensus 176 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~--------g~~---~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~nd~-~A 243 (333)
T 3jvd_A 176 NIAALVGEESLSTTQERMRGISHAASIY--------GAE---VTFHFGHYSVESGEEMAQVVFNNGLPDALIVASPR-LM 243 (333)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCE---EEEEECCSSHHHHHHHHHHHHHTCCCSEEEECCHH-HH
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHC--------CCC---EEEecCCCCHHHHHHHHHHHhcCCCCcEEEECCHH-HH
Confidence 688887553 223345578888888764 223 2233 4456677777778888764 8899975443 33
Q ss_pred HHHHHhhccCC--cc----EEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHH
Q 008205 111 HLVSHIANEFQ--VP----LLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVD 161 (574)
Q Consensus 111 ~~va~~~~~~~--iP----~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~ 161 (574)
..+...+.+.+ || ++++... .+.....|-+-.+..+...++...++++.
T Consensus 244 ~g~~~al~~~G~~vP~disvig~D~~--~~~~~~~p~lttv~~~~~~~g~~Av~~L~ 298 (333)
T 3jvd_A 244 AGVMRAFTRLNVRVPHDVVIGGYDDP--EWYSFVGAGITTFVPPHEEMGKEAVRLLV 298 (333)
T ss_dssp HHHHHHHHHTTCCTTTTCEEEEESCC--GGGGGSTTSCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCceEEEEECCh--HHHHhcCCCceEEecCHHHHHHHHHHHHH
Confidence 34444454443 34 6665322 23332335566666777778888887654
No 324
>3e7d_A COBH, precorrin-8X methylmutase; ssgcid, decode, braba00006A, structural genomics, seattle ST genomics center for infectious disease; 1.80A {Brucella abortus} SCOP: c.23.17.1
Probab=21.61 E-value=1e+02 Score=26.79 Aligned_cols=49 Identities=20% Similarity=0.170 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHhHhc---CcEEEEcCC-ChH-HHHHHHHhhc-cCCccEEeccc
Q 008205 81 YSRFLGMVEALTLLEN---ETVAIIGPQ-FSV-IAHLVSHIAN-EFQVPLLSFAA 129 (574)
Q Consensus 81 ~~~~~a~~~~~~l~~~---~v~aiiGp~-~s~-~~~~va~~~~-~~~iP~Is~~~ 129 (574)
++..+|+-.+++++++ ...+|||.. .-- .+.+=..+.. ..+||+|+..+
T Consensus 138 GNAPTAL~~Lleli~~g~~~PalVIG~PVGFV~aaESKe~L~~~~~~vP~I~~~G 192 (212)
T 3e7d_A 138 GNAPTALFRLFELLDAGAPKPALIIGMPVGFVGAAESKDELAANSRGVPYVIVRG 192 (212)
T ss_dssp SSCHHHHHHHHHHHHTTCCCCSEEEECCCSSSSHHHHHHHHHHCCTTCCEEEECS
T ss_pred ECcHHHHHHHHHHHHcCCCCcceEEEeCCCccChHHHHHHHHhcCCCCCEEEEec
Confidence 6788899999999987 467899843 221 1211122333 26899998643
No 325
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein, periplasmic-binding protein, maltose, SUG binding protein; 2.20A {Xanthomonas axonopodis PV}
Probab=21.19 E-value=1.3e+02 Score=29.78 Aligned_cols=26 Identities=8% Similarity=0.075 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEEEEe
Q 008205 49 AKVAIEAAVEDVNSNPAILGGTKLKLTVH 77 (574)
Q Consensus 49 ~~~a~~~Av~~iN~~~~~l~g~~l~~~~~ 77 (574)
....++-.++++++.. ||++|++...
T Consensus 40 ~~~~~~~~~~~F~~~~---pgi~V~~~~~ 65 (458)
T 3uor_A 40 EAEVVAELVADFEKQN---PTIHVDVQNI 65 (458)
T ss_dssp HHHHHHHHHHHHHTTC---TTEEEEEEEC
T ss_pred cHHHHHHHHHHHHHHC---CCcEEEEEEc
Confidence 3466788899999876 7888888775
No 326
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=21.06 E-value=1.5e+02 Score=26.72 Aligned_cols=80 Identities=5% Similarity=-0.029 Sum_probs=42.4
Q ss_pred EEEEEEEc--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeCh-HHHHHHHHHHH
Q 008205 167 NVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEVLNAAK 243 (574)
Q Consensus 167 ~v~ii~~~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~-~~~~~il~~a~ 243 (574)
.++++..+ ++|.....+.+.+.+++.|+.+..... ....+...-...++.+...+.+.||+.... ......++++.
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~ 81 (288)
T 1gud_A 3 EYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFAS-PSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAW 81 (288)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEEC-SSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHHH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC-CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHH
Confidence 56666643 334445666777777777876654321 011233333455666666677777765332 22223455666
Q ss_pred HCCC
Q 008205 244 HLRM 247 (574)
Q Consensus 244 ~~gm 247 (574)
+.|+
T Consensus 82 ~~~i 85 (288)
T 1gud_A 82 KKGI 85 (288)
T ss_dssp HTTC
T ss_pred HCCC
Confidence 5553
No 327
>3g13_A Putative conjugative transposon recombinase; resolvase, PSI-II, target 11223F, structural genomics, prote structure initiative; 2.00A {Clostridium difficile}
Probab=21.05 E-value=2.3e+02 Score=23.27 Aligned_cols=39 Identities=8% Similarity=0.033 Sum_probs=23.7
Q ss_pred hhhHHHHHHHhhcCCCeEEEEEe------ChHHHHHHHHHHHHCC
Q 008205 208 RNQIIDTLLTVSSMMSRILILHT------YDIWGLEVLNAAKHLR 246 (574)
Q Consensus 208 ~~~~~~~l~~ik~~~~~viil~~------~~~~~~~il~~a~~~g 246 (574)
...+..+|+.++....++||+.- +..+...++....+.|
T Consensus 61 Rp~l~~ll~~~~~g~id~vvv~~ldRl~R~~~~~~~~~~~l~~~g 105 (169)
T 3g13_A 61 REDFQRMINDCMNGEIDMVFTKSISRFARNTLDTLKYVRMLKERN 105 (169)
T ss_dssp SHHHHHHHHHHHTTCCSEEEESCHHHHCSSHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeccccccChHHHHHHHHHHHHcC
Confidence 45677777777766666666541 2345556666666555
No 328
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=21.00 E-value=2.8e+02 Score=21.70 Aligned_cols=59 Identities=10% Similarity=0.005 Sum_probs=31.9
Q ss_pred hHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeC--hHHHHHHHHHHHHCC
Q 008205 181 GIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY--DIWGLEVLNAAKHLR 246 (574)
Q Consensus 181 ~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~--~~~~~~il~~a~~~g 246 (574)
..+.+.+.+.+.|...... ... + ....++.+++..+++|+++.. ......+++++++..
T Consensus 27 ~~~~l~~~L~~~~~~~~v~-~~~---~---~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~ 87 (152)
T 3eul_A 27 FREGVVRALSLSGSVNVVG-EAD---D---GAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYE 87 (152)
T ss_dssp HHHHHHHHHHHHSSEEEEE-EES---S---HHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCCCeEEEE-EeC---C---HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 4566677777666321111 111 2 234444555556788888743 344666777777654
No 329
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=20.94 E-value=1.1e+02 Score=24.51 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=27.4
Q ss_pred CCeEEEEEeChHHHHHHHHHHHHCCCCCCCeEEEEeC
Q 008205 222 MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD 258 (574)
Q Consensus 222 ~~~viil~~~~~~~~~il~~a~~~gm~~~~~~~i~~~ 258 (574)
..+++++...++.+..+++++.+.|. +-+|+.+.
T Consensus 69 ~vDlvii~vp~~~v~~v~~~~~~~g~---~~i~~~~~ 102 (138)
T 1y81_A 69 DVDVIVFVVPPKVGLQVAKEAVEAGF---KKLWFQPG 102 (138)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTC---CEEEECTT
T ss_pred CCCEEEEEeCHHHHHHHHHHHHHcCC---CEEEEcCc
Confidence 57899999889999999998888774 45787664
No 330
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=20.86 E-value=1.2e+02 Score=27.41 Aligned_cols=78 Identities=6% Similarity=-0.132 Sum_probs=44.8
Q ss_pred eEEEEEEEc------CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHH
Q 008205 166 RNVIALYVD------DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVL 239 (574)
Q Consensus 166 ~~v~ii~~~------~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il 239 (574)
+.++++..+ +++.....+.+++.+++.|+.+.... ...+.......++.+...+.+.||+....... ..+
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~ 80 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFP---FSEDRSQIDIYRDLIRSGNVDGFVLSSINYND-PRV 80 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECC---CCSSTTCCHHHHHHHHTTCCSEEEECSCCTTC-HHH
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEe---CCCchHHHHHHHHHHHcCCCCEEEEeecCCCc-HHH
Confidence 356666543 34556677788888888888765421 11122223456677777778877776432111 345
Q ss_pred HHHHHCCC
Q 008205 240 NAAKHLRM 247 (574)
Q Consensus 240 ~~a~~~gm 247 (574)
+.+.+.|.
T Consensus 81 ~~l~~~~i 88 (287)
T 3bbl_A 81 QFLLKQKF 88 (287)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 55655553
No 331
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=20.46 E-value=1.4e+02 Score=27.08 Aligned_cols=77 Identities=12% Similarity=-0.008 Sum_probs=45.4
Q ss_pred eEEEEEEE----c--CCCCcchHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEeChHHHHHHH
Q 008205 166 RNVIALYV----D--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVL 239 (574)
Q Consensus 166 ~~v~ii~~----~--~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~~~~~~~~il 239 (574)
+.|+++.. + +.+.....+.+++.+++.|+.+.....-. .......++.+...+.+.||+....... ..+
T Consensus 7 ~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~----~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~~~ 81 (294)
T 3qk7_A 7 DAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEP----GEKYQSLIHLVETRRVDALIVAHTQPED-FRL 81 (294)
T ss_dssp CEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECT----TCCCHHHHHHHHHTCCSEEEECSCCSSC-HHH
T ss_pred ceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCC----hhhHHHHHHHHHcCCCCEEEEeCCCCCh-HHH
Confidence 56788776 2 34455667778888888888776543221 2223445666666677777776432221 455
Q ss_pred HHHHHCCC
Q 008205 240 NAAKHLRM 247 (574)
Q Consensus 240 ~~a~~~gm 247 (574)
..+.+.|+
T Consensus 82 ~~l~~~~i 89 (294)
T 3qk7_A 82 QYLQKQNF 89 (294)
T ss_dssp HHHHHTTC
T ss_pred HHHHhCCC
Confidence 66666554
No 332
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=20.40 E-value=2e+02 Score=26.51 Aligned_cols=132 Identities=14% Similarity=0.136 Sum_probs=71.0
Q ss_pred EEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCHHHHHHHHHHhHhc-CcEEEE--cCCChHHH
Q 008205 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAII--GPQFSVIA 110 (574)
Q Consensus 34 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aii--Gp~~s~~~ 110 (574)
.+ .+|-..+ -+.+.+|+.|+.++ +|..+.+...+++-.--+.++-..+.++. ++.+|+ .+.....
T Consensus 37 ~~-~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~~D~iviR~~~~~~~- 104 (291)
T 3d6n_B 37 AV-LFFSEPS---TRTRLSFEKAAREL-------GIETYLVSGSESSTVKGESFFDTLKTFEGLGFDYVVFRVPFVFFP- 104 (291)
T ss_dssp EE-EEESSCC---HHHHHHHHHHHHHT-------TCEEEEEETTTTSCCTTCCHHHHHHHHHHTTCSEEEEEESSCCCS-
T ss_pred EE-EEecCCC---ccHHHHHHHHHHHh-------CCeEEEECCccCcccCCCcHHHHHHHHHHhcCCEEEEEcCChHHH-
Confidence 45 7887665 47889999999885 45445554333322211222222333333 223333 4433322
Q ss_pred HHHHH-hhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHH---HHcC---CeEEEEEEEcCCCCcchHH
Q 008205 111 HLVSH-IANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG---WRNVIALYVDDDHGRNGIA 183 (574)
Q Consensus 111 ~~va~-~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll---~~~~---W~~v~ii~~~~~~g~~~~~ 183 (574)
.. ++...++|+|.-+-++ ...| .++++|++ +++| -.+++++. |-.+.....
T Consensus 105 ---~~~la~~~~vPVINAG~g~-----~~HP------------tQaLaDl~Ti~e~~g~l~gl~va~vG--Dl~~~rva~ 162 (291)
T 3d6n_B 105 ---YKEIVKSLNLRLVNAGDGT-----HQHP------------SQGLIDFFTIKEHFGEVKDLRVLYVG--DIKHSRVFR 162 (291)
T ss_dssp ---CHHHHHTCSSEEEEEEETT-----TBCH------------HHHHHHHHHHHHHHSCCTTCEEEEES--CCTTCHHHH
T ss_pred ---HHHHHHhCCCCEEeCccCC-----CcCc------------HHHHHHHHHHHHHhCCcCCcEEEEEC--CCCCCchHH
Confidence 23 4456689999733222 1112 36788764 4554 24666664 322345667
Q ss_pred HHHHHHhhcCcEEEEE
Q 008205 184 ALGDKLAEKRCRLSHK 199 (574)
Q Consensus 184 ~l~~~~~~~g~~v~~~ 199 (574)
.+...+...|.++...
T Consensus 163 Sl~~~~~~~g~~v~~~ 178 (291)
T 3d6n_B 163 SGAPLLNMFGAKIGVC 178 (291)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHCCCEEEEE
Confidence 7778888888877653
No 333
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=20.36 E-value=3.6e+02 Score=23.90 Aligned_cols=94 Identities=6% Similarity=0.058 Sum_probs=46.8
Q ss_pred HHHHhhccCCccEEecccCCCCcCCCCCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCCCCcchHHHHHHHHhh
Q 008205 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAE 191 (574)
Q Consensus 112 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~ll~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~ 191 (574)
.+..+|...+||+.......+ .......+.+.++..+-+-+ ...+-........+.+.+.+
T Consensus 54 ~a~~~A~~LGIpl~~v~~~g~----------------~~~e~e~l~~~l~~~~i~~v---v~Gdi~s~yqr~r~e~vc~~ 114 (237)
T 3rjz_A 54 LTDLQARALGIPLVKGFTQGE----------------KEKEVEDLKRVLSGLKIQGI---VAGALASKYQRKRIEKVAKE 114 (237)
T ss_dssp HHHHHHHHHTCCEEEEEC----------------------CHHHHHHHHTTSCCSEE---ECC---CCSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEECCCC----------------chHHHHHHHHHHHhcCCcEE---EECCcchHHHHHHHHHHHHH
Confidence 345567777888775422110 11123455556665543332 22333333455667777777
Q ss_pred cCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe
Q 008205 192 KRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT 230 (574)
Q Consensus 192 ~g~~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~ 230 (574)
.|+.... | .-..+-..+++++-+.+-+.+|+..
T Consensus 115 ~gl~~~~----P--LW~~d~~~Ll~e~i~~G~~aiiv~v 147 (237)
T 3rjz_A 115 LGLEVYT----P--AWGRDAKEYMRELLNLGFKIMVVGV 147 (237)
T ss_dssp TTCEEEC----S--SSSCCHHHHHHHHHHTTCEEEEEEE
T ss_pred cCCEEEc----c--ccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 7766532 2 1122345566666666666666654
No 334
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=20.15 E-value=41 Score=30.09 Aligned_cols=52 Identities=8% Similarity=0.010 Sum_probs=30.1
Q ss_pred CeEEEEEEEcCCCCcchHHHHHHHHhhcCc----EEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEEe
Q 008205 165 WRNVIALYVDDDHGRNGIAALGDKLAEKRC----RLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT 230 (574)
Q Consensus 165 W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~----~v~~~~~~~~~~~~~~~~~~l~~ik~~~~~viil~~ 230 (574)
-++|+++. |......+.+.+...|+ .+. .++ +....++.+.+...+.++...
T Consensus 137 g~~v~v~~-----g~~~~~~l~~~~~~~g~~~~~~~~---~~~------~~~~~~~~l~~G~vDa~~~~~ 192 (259)
T 4dz1_A 137 KYSIGYPR-----GMAYSDLIKNDLEPKGYYSLSKVK---LYP------TYNETMADLKNGNLDLAFIEE 192 (259)
T ss_dssp GSCEEEET-----TSTHHHHHHHHTGGGTSCCGGGCE---EES------SHHHHHHHHHHTSCSEEEEEH
T ss_pred CCEEEEeC-----CcHHHHHHHHhcccccccccceeE---ecC------CHHHHHHHHHcCCCCEEEecH
Confidence 46777753 22234556666666553 221 111 345677888888888888763
Done!