Query 008206
Match_columns 574
No_of_seqs 233 out of 904
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 20:50:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008206.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008206hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00684 Terpene_cyclase_plant_ 100.0 3E-153 7E-158 1271.9 54.0 532 20-571 1-542 (542)
2 PLN02279 ent-kaur-16-ene synth 100.0 2E-136 4E-141 1160.8 46.6 481 72-574 269-778 (784)
3 PLN02592 ent-copalyl diphospha 100.0 4E-108 1E-112 925.0 43.1 455 72-573 309-800 (800)
4 PF01397 Terpene_synth: Terpen 100.0 2.7E-56 5.9E-61 428.4 14.5 174 30-212 1-183 (183)
5 PF03936 Terpene_synth_C: Terp 100.0 2.2E-48 4.7E-53 394.4 21.8 269 243-519 1-270 (270)
6 cd00868 Terpene_cyclase_C1 Ter 100.0 2.1E-45 4.5E-50 375.3 30.2 282 257-547 1-284 (284)
7 cd00687 Terpene_cyclase_nonpla 100.0 4.8E-34 1E-38 295.7 21.8 249 261-523 14-266 (303)
8 PLN02150 terpene synthase/cycl 100.0 1.2E-31 2.6E-36 232.1 10.0 95 480-574 1-96 (96)
9 cd00385 Isoprenoid_Biosyn_C1 I 99.8 9.1E-21 2E-25 185.1 13.4 229 291-541 2-243 (243)
10 PF06330 TRI5: Trichodiene syn 97.6 0.00062 1.3E-08 72.2 11.6 195 298-522 78-277 (376)
11 cd00686 Terpene_cyclase_cis_tr 97.3 0.0051 1.1E-07 64.5 13.9 191 301-521 81-276 (357)
12 PF00494 SQS_PSY: Squalene/phy 93.1 7.1 0.00015 39.7 17.8 199 302-535 17-233 (267)
13 cd00867 Trans_IPPS Trans-Isopr 91.5 2.5 5.5E-05 41.9 12.0 118 386-520 86-214 (236)
14 TIGR03465 HpnD squalene syntha 88.6 31 0.00067 35.3 17.4 195 303-540 18-227 (266)
15 cd00683 Trans_IPPS_HH Trans-Is 86.9 38 0.00083 34.4 17.4 198 303-541 24-237 (265)
16 cd00685 Trans_IPPS_HT Trans-Is 84.1 33 0.00071 34.9 14.8 120 386-520 109-239 (259)
17 PLN02890 geranyl diphosphate s 83.7 40 0.00088 37.2 16.0 89 385-479 227-316 (422)
18 TIGR03464 HpnC squalene syntha 80.1 74 0.0016 32.5 18.0 109 303-440 18-131 (266)
19 PLN02632 phytoene synthase 79.8 89 0.0019 33.3 17.3 191 304-533 74-281 (334)
20 TIGR02749 prenyl_cyano solanes 71.1 97 0.0021 32.8 14.0 88 385-477 133-220 (322)
21 CHL00151 preA prenyl transfera 70.8 77 0.0017 33.5 13.2 87 386-478 135-222 (323)
22 COG0142 IspA Geranylgeranyl py 69.9 1.5E+02 0.0033 31.3 16.9 109 385-499 134-252 (322)
23 PLN02857 octaprenyl-diphosphat 66.5 67 0.0014 35.4 11.9 87 385-478 227-315 (416)
24 TIGR02748 GerC3_HepT heptapren 56.8 2.6E+02 0.0057 29.5 14.1 87 385-478 129-217 (319)
25 COG3707 AmiR Response regulato 52.5 12 0.00026 36.8 2.8 44 468-511 129-173 (194)
26 PF03861 ANTAR: ANTAR domain; 50.9 15 0.00033 28.4 2.7 29 485-513 15-43 (56)
27 KOG1719 Dual specificity phosp 47.0 16 0.00034 34.8 2.6 29 481-509 119-148 (183)
28 PF12368 DUF3650: Protein of u 35.5 29 0.00063 23.4 1.7 18 491-508 9-26 (28)
29 PRK10888 octaprenyl diphosphat 32.3 6.3E+02 0.014 26.7 15.6 88 385-479 130-219 (323)
30 COG1093 SUI2 Translation initi 27.9 73 0.0016 32.8 4.0 64 475-541 96-169 (269)
31 smart00400 ZnF_CHCC zinc finge 27.8 65 0.0014 24.6 2.9 25 483-507 30-54 (55)
32 PF13798 PCYCGC: Protein of un 26.7 76 0.0017 30.2 3.6 33 492-531 126-158 (158)
33 COG4738 Predicted transcriptio 25.9 1.5E+02 0.0033 26.7 5.1 84 77-170 14-102 (124)
34 smart00463 SMR Small MutS-rela 24.7 87 0.0019 25.6 3.3 23 496-518 7-29 (80)
35 PRK10581 geranyltranstransfera 24.2 5.4E+02 0.012 26.9 9.9 111 395-520 152-276 (299)
36 PF00348 polyprenyl_synt: Poly 23.6 7.7E+02 0.017 24.9 10.9 79 396-479 114-194 (260)
37 KOG3951 Uncharacterized conser 23.6 1.1E+02 0.0023 31.5 4.2 56 149-212 264-319 (321)
38 PF01713 Smr: Smr domain; Int 21.9 1E+02 0.0022 25.4 3.2 25 496-520 4-28 (83)
39 PF04391 DUF533: Protein of un 21.0 6.1E+02 0.013 24.9 8.8 102 58-211 82-186 (188)
40 COG1308 EGD2 Transcription fac 20.0 98 0.0021 28.2 2.8 22 488-509 87-108 (122)
41 KOG1720 Protein tyrosine phosp 20.0 88 0.0019 31.3 2.8 27 483-509 159-186 (225)
No 1
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=3.4e-153 Score=1271.85 Aligned_cols=532 Identities=53% Similarity=0.915 Sum_probs=510.0
Q ss_pred CCCCCCCCCCCCC-CcccccCCcccchhHHHHHHHHHHHHHHHHHhc---cccCccCHHHHHHHHHHHHHhCcccCcHHH
Q 008206 20 RRSSNYHPSIWGD-HFINVSSNEKYTNTEVEKRFETLKAEIEKLLVS---NNTAWKTLEEIVAIVNQLQRLGVAYHFENE 95 (574)
Q Consensus 20 r~~~~~~ps~W~~-~f~~~~~~~~~~~~~~~~~~~~lk~~vr~~l~~---~~~~~~d~~~~l~lID~lqrLGi~~hF~~E 95 (574)
||+++||||+||| +|++++++.. ....+.+++++||++||+||.. .. |++++|++||+||||||+|||++|
T Consensus 1 r~~~~~~~~~w~~~~~~s~~~~~~-~~~~~~~~~~~lk~~v~~~~~~~~~~~----~~~~~l~liD~lqrLGi~~hF~~E 75 (542)
T cd00684 1 RPSANFPPSLWGDDHFLSLSSDYS-EEDELEEEIEELKEEVRKMLEDSEYPV----DLFERLWLIDRLQRLGISYHFEDE 75 (542)
T ss_pred CCCCCCCCCcCCCcceeecCCCcc-hhHHHHHHHHHHHHHHHHHHHhcccCC----CHHHHHHHHHHHHHcCchhhhHHH
Confidence 7899999999999 7777655432 2226889999999999999985 56 899999999999999999999999
Q ss_pred HHHHHHHHHhhc-CCCCCCCCCCCCCchHHHHHHHHHHHhcCceechhhhccccccccccccccccChHHHHhHhhhccC
Q 008206 96 IKEALQTIYDSH-VNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYL 174 (574)
Q Consensus 96 I~~~L~~i~~~~-~~~~~~~~~~~~~Dl~~~al~FRlLR~hGy~vS~dvf~~F~d~~g~F~~~~~~dv~glL~LYeAs~l 174 (574)
|+++|++||++| +++. .. ..||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||||||||+
T Consensus 76 I~~~L~~i~~~~~~~~~--~~---~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l 150 (542)
T cd00684 76 IKEILDYIYRYWTERGE--SN---EDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHL 150 (542)
T ss_pred HHHHHHHHHHhhccccc--cc---CCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhc
Confidence 999999999998 4331 11 57999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhhc---CCCchHHHHHHHccCCccCCcchHHHhhhHHhhhcCCccccHHHHHHHhhch
Q 008206 175 RVQGENILEEACEFSRKHLKSLLSH---LSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDF 251 (574)
Q Consensus 175 ~~~gE~iLdea~~ft~~~L~~~~~~---~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~~n~~lLelAkldF 251 (574)
++|||+|||||++||++||++.+++ ++++|+++|++||++|||+++||||||+||++|+++ +++|++||||||+||
T Consensus 151 ~~~gE~iLdeA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~-~~~n~~lLelAkldf 229 (542)
T cd00684 151 SFPGEDILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQE-DDHNETLLELAKLDF 229 (542)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCC-ccccHHHHHHHHHHH
Confidence 9999999999999999999999996 789999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHhHhcCcCCChhhhhhHhhhhhhhhccccCCCcchhhHHHHHHHHHHHhhhhhhcccCCHHHH
Q 008206 252 NLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEEL 331 (574)
Q Consensus 252 n~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl 331 (574)
|+||++||+||+++++||+++||.+++||+|+|+++||||++|++|+|++|.+|+++||+++|+|++||+||.|||.+|+
T Consensus 230 n~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl 309 (542)
T cd00684 230 NILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEEL 309 (542)
T ss_pred HHHhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHH
Confidence 99999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhc
Q 008206 332 KLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHA 410 (574)
Q Consensus 332 ~~ft~ai~~~~~~~~rWD~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~-g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~ 410 (574)
+.||+||+ |||+++++.+|+|||+||.+|++++++++.++.+ +++ +++.|++++|++++++|++||+|+++
T Consensus 310 ~~ft~ai~-------rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~-~~~~~~~~~~~~~~~a~l~EA~w~~~ 381 (542)
T cd00684 310 ELFTEAVE-------RWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGS-YVVPYLKEAWKDLVKAYLVEAKWAHE 381 (542)
T ss_pred HHHHHHHH-------hccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999 9999999999999999999999999999999999 776 89999999999999999999999999
Q ss_pred CCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHhhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchhh
Q 008206 411 KYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVE 490 (574)
Q Consensus 411 g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V~ 490 (574)
|++||++|||++|.+|+|+++++++++++||.. +|+++++|+..+|+|+++++.++||+|||+||++|+++|+++|+|.
T Consensus 382 g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~-l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~ 460 (542)
T cd00684 382 GYVPTFEEYMENALVSIGLGPLLLTSFLGMGDI-LTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIE 460 (542)
T ss_pred CCCCCHHHHHhhhhHHhhHHHHHHHHHHhcCCC-CCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHH
Confidence 999999999999999999999999999999999 9999999988789999999999999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCChhHHHHHHHHhhhhccccccCCCCCCCChhHHHHHHhhhc
Q 008206 491 CYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDP-NHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLV 569 (574)
Q Consensus 491 cyMke~g~S~eeA~~~i~~~ie~~wk~ln~e~l~~-~~~p~~~~~~~lN~aR~~~~~Y~~~Dgyt~~~~~~k~~i~~ll~ 569 (574)
|||+|+|+|+|||+++++++|+++||++|++++++ +++|++|+++++|+||+++++|+++||||.|++.||++|++||+
T Consensus 461 ~ymke~g~s~eeA~~~i~~~ie~~wk~ln~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~~~~~i~~ll~ 540 (542)
T cd00684 461 CYMKEYGVSEEEAREEIKKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLF 540 (542)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhc
Confidence 99999999999999999999999999999999998 78999999999999999999999999999998789999999999
Q ss_pred cc
Q 008206 570 DP 571 (574)
Q Consensus 570 ~p 571 (574)
+|
T Consensus 541 ~p 542 (542)
T cd00684 541 EP 542 (542)
T ss_pred CC
Confidence 98
No 2
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=1.8e-136 Score=1160.77 Aligned_cols=481 Identities=28% Similarity=0.448 Sum_probs=457.4
Q ss_pred CHHHHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhc-CCCCCCCCCCCCCchHHHHHHHHHHHhcCceechhhhcccccc
Q 008206 72 TLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSH-VNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDE 150 (574)
Q Consensus 72 d~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~~-~~~~~~~~~~~~~Dl~~~al~FRlLR~hGy~vS~dvf~~F~d~ 150 (574)
++++++|+||+||||||+|||++||+++|+++|++| +.+. +. ..|+++|||+|||||||||+||||||++|+|+
T Consensus 269 ~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~~~--~~---~~Dl~~tAl~FRLLR~hGy~VS~dvf~~F~~~ 343 (784)
T PLN02279 269 DQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGEE--EI---FLDLATCALAFRILRLNGYDVSSDPLKQFAED 343 (784)
T ss_pred cHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhccccc--CC---CCCHHHHHHHHHHHHHcCCCCChhHHhhcCCC
Confidence 689999999999999999999999999999999998 4321 11 57999999999999999999999999999965
Q ss_pred cccccccc---ccChHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHHHhhc-------CCCchHHHHHHHccCCccCCc
Q 008206 151 KGEFKAML---TNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH-------LSTPLVDQVEHSLEIPLHRGM 220 (574)
Q Consensus 151 ~g~F~~~~---~~dv~glL~LYeAs~l~~~gE~iLdea~~ft~~~L~~~~~~-------~~~~l~~~V~~aL~~P~~~~~ 220 (574)
+ |++++ .+||+||||||||||+++|||+|||||++||++||++.+++ ++++|++||+|||++|||+++
T Consensus 344 -~-F~~~l~~~~~dv~gmL~LY~AS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~~~~L~~eV~~AL~~P~~~~l 421 (784)
T PLN02279 344 -H-FSDSLGGYLKDTGAVLELFRASQISYPDESLLEKQNSWTSHFLEQGLSNWSKTADRLRKYIKKEVEDALNFPYYANL 421 (784)
T ss_pred -c-ccchhcccchhhHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhcccccccccCccHHHHHHHHhcCchhcCc
Confidence 4 99988 59999999999999999999999999999999999998874 467899999999999999999
Q ss_pred chHHHhhhHHhhhcCCcc------------ccHHHHHHHhhchHHHHHhhHHHHHHHHHHHhHhcCcCCChhhhhhHhhh
Q 008206 221 PRLEARQYISIYEADNST------------RNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVEC 288 (574)
Q Consensus 221 ~rlear~yi~~Y~~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~ 288 (574)
||||||+||++|+++ +. +|++||||||+|||+||++||+||++++|||+++|| .++||||||++||
T Consensus 422 ~RlEaR~yI~~Y~~~-~~~i~Kt~yr~~~~~n~~lLeLAklDFN~~Qs~hq~EL~~l~rWwke~~L-~~L~faRdr~ve~ 499 (784)
T PLN02279 422 ERLANRRSIENYAVD-DTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREELKQLERWIVENRL-DKLKFARQKLAYC 499 (784)
T ss_pred cHHHHHHHHHHhccc-cchhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCeeHHhcCC-ccCCchhhHHHHH
Confidence 999999999999998 75 899999999999999999999999999999999999 6999999999999
Q ss_pred hhhhhccccCCCcchhhHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHHHhhhhhccccchh-hhccCchhHHHHHHHH
Q 008206 289 YFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIESIHIVFGRWEVV-AANELPKYMQVCYFAL 367 (574)
Q Consensus 289 yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~~~~~~~~rWD~~-~~~~lpe~mk~~~~al 367 (574)
|||++|++|||+||.+|++|||.+++++++||+||+|||.||++.||+||+ |||.+ .++.+|+|||+||.+|
T Consensus 500 Yf~aaa~~fEPe~S~aRi~~aK~~~L~tviDD~fD~yGt~eEL~~ft~aVe-------RWD~~~~~~~lpeymki~f~aL 572 (784)
T PLN02279 500 YFSAAATLFSPELSDARLSWAKNGVLTTVVDDFFDVGGSEEELENLIQLVE-------KWDVNGSPDFCSEQVEIIFSAL 572 (784)
T ss_pred HHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH-------HhccccchhhCcHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 99998 5689999999999999
Q ss_pred HHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCcccc
Q 008206 368 LDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAIT 446 (574)
Q Consensus 368 ~~~~~ei~~~~~~-g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~ 446 (574)
+++++|++.++.+ ++. ++++|++++|++++++|++||+|+++||+||++|||+|+.+|+|+++++..+++++|.. +|
T Consensus 573 ~~t~nei~~~~~~~qGr-~v~~~l~~aW~~ll~ayl~EAeW~~~g~vPT~eEYL~na~vS~~l~~i~l~~~~~~G~~-l~ 650 (784)
T PLN02279 573 RSTISEIGDKAFTWQGR-NVTSHIIKIWLDLLKSMLTEAQWSSNKSTPTLDEYMTNAYVSFALGPIVLPALYLVGPK-LS 650 (784)
T ss_pred HHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhchhhhhhHHHHHHHHHHhCCC-CC
Confidence 9999999999765 333 69999999999999999999999999999999999999999999999989899999998 99
Q ss_pred HHHHhhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchhhHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHhhcC
Q 008206 447 KRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQY--GVSEEEACNKIKGMVEIEWMNINEEIQD 524 (574)
Q Consensus 447 ~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V~cyMke~--g~S~eeA~~~i~~~ie~~wk~ln~e~l~ 524 (574)
+++++| .++|+|+++++.|+||+|||+||++|+++|++ |+|+|||+|+ |+|+|||+++++++|+++||+||+++++
T Consensus 651 eev~e~-~~~~~L~~l~s~I~RLlNDI~S~e~E~~rG~~-nsV~cYMke~~~gvSeEEAi~~i~~~Ie~~wKeLn~~~l~ 728 (784)
T PLN02279 651 EEVVDS-PELHKLYKLMSTCGRLLNDIRGFKRESKEGKL-NAVSLHMIHGNGNSTEEEAIESMKGLIESQRRELLRLVLQ 728 (784)
T ss_pred HHHHhC-cchhHHHHHHHHHHHHHHhccccHhHHhCCCc-ceehhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999 69999999999999999999999999999998 9999999996 8999999999999999999999999996
Q ss_pred C--CCCChhHHHHHHHHhhhhccccccCCCCCCCChhHHHHHHhhhcccCCC
Q 008206 525 P--NHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM 574 (574)
Q Consensus 525 ~--~~~p~~~~~~~lN~aR~~~~~Y~~~Dgyt~~~~~~k~~i~~ll~~pi~~ 574 (574)
+ +++|++|+++++|+||++++||+++||||.+ .||++|++||++||++
T Consensus 729 ~~~~~vp~~~~~~~ln~aR~~~~~Y~~~Dgyt~~--~~k~~i~~ll~ePi~l 778 (784)
T PLN02279 729 EKGSNVPRECKDLFWKMSKVLHLFYRKDDGFTSN--DMMSLVKSVIYEPVSL 778 (784)
T ss_pred cCCCCCCHHHHHHHHHHHHhhhhheeCCCCCChH--HHHHHHHHHhccCCcC
Confidence 4 5799999999999999999999999999964 5999999999999985
No 3
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=4.4e-108 Score=925.03 Aligned_cols=455 Identities=27% Similarity=0.370 Sum_probs=405.6
Q ss_pred CHHHHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhc-CCCCCCCCCCCCCchHHHHHHHHHHHhcCceechhhhcccccc
Q 008206 72 TLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSH-VNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDE 150 (574)
Q Consensus 72 d~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~~-~~~~~~~~~~~~~Dl~~~al~FRlLR~hGy~vS~dvf~~F~d~ 150 (574)
+++++||+||+||||||+|||++||+++|+++|++| ++++++.......|+++|||+|||||||||+||||||++|++
T Consensus 309 d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TALaFRLLRqhGy~VS~DvF~~F~~- 387 (800)
T PLN02592 309 DLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRLLRLHGHQVSADVFKHFEK- 387 (800)
T ss_pred cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhcC-
Confidence 789999999999999999999999999999999999 555433221114799999999999999999999999999986
Q ss_pred cccccccc---ccChHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHHHhh--c------CCCchHHHHHHHccCCccCC
Q 008206 151 KGEFKAML---TNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLS--H------LSTPLVDQVEHSLEIPLHRG 219 (574)
Q Consensus 151 ~g~F~~~~---~~dv~glL~LYeAs~l~~~gE~iLdea~~ft~~~L~~~~~--~------~~~~l~~~V~~aL~~P~~~~ 219 (574)
+|+|++.+ .+|++|||+||||||+++|||.|||+|+.||++||++.++ + ++++|+++|+|||++|||++
T Consensus 388 ~g~F~~~~ge~~~Dv~glL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~l~d~~~~~~~L~~eV~~AL~~P~~~~ 467 (800)
T PLN02592 388 GGEFFCFAGQSTQAVTGMFNLYRASQVLFPGEKILENAKEFSSKFLREKQEANELLDKWIIMKDLPGEVGFALEIPWYAS 467 (800)
T ss_pred CCCccccccccccchHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhhccccccccccCccHHHHHHHhccChhhcC
Confidence 89998665 8999999999999999999999999999999999999864 2 35789999999999999999
Q ss_pred cchHHHhhhHHhhhcCCcc-------------ccHHHHHHHhhchHHHHHhhHHHHHHHHHHHhHhcCcCCChhhhhhHh
Q 008206 220 MPRLEARQYISIYEADNST-------------RNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLV 286 (574)
Q Consensus 220 ~~rlear~yi~~Y~~~~~~-------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~v 286 (574)
+||||||+||++|+++ ++ +|++||||||+|||+||++||+||++++|||+++|| .++||||||++
T Consensus 468 l~RlEaR~yI~~Y~~~-~~~~i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~EL~~lsrWwke~~L-~~L~faRdr~v 545 (800)
T PLN02592 468 LPRVETRFYIEQYGGE-DDVWIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQKWYEECNL-GEFGVSRSELL 545 (800)
T ss_pred cchHHHHHHHHHhcCC-cccchhhhhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhcCC-CcCCcchhHHH
Confidence 9999999999999987 65 499999999999999999999999999999999999 59999999999
Q ss_pred hhhhhhhccccCCCcchhhHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHHHhhhh-hccccchhhhccCch------h
Q 008206 287 ECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIESIHI-VFGRWEVVAANELPK------Y 359 (574)
Q Consensus 287 e~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~~~~~-~~~rWD~~~~~~lpe------~ 359 (574)
|||||++|++|||+||.+|+++||.+++++++||+||+|||+||++.||++|+.... ...|||.+.+++||+ |
T Consensus 546 e~Yfwa~~~~feP~~s~~Ri~~aK~~~LitviDD~fD~yGt~eEl~~ft~~v~~~~~~~~~rWd~~~~~~lp~~~~~~~~ 625 (800)
T PLN02592 546 LAYFLAAASIFEPERSHERLAWAKTTVLVEAISSYFNKETSSKQRRAFLHEFGYGYKINGRRSDHHFNDRNMRRSGSVKT 625 (800)
T ss_pred HHHHHHHHhhcCccchHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHHhcccccccccCchhhhcccccccchhH
Confidence 999999999999999999999999999999999999999999999999999951000 011999999999988 9
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHH
Q 008206 360 MQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALV 438 (574)
Q Consensus 360 mk~~~~al~~~~~ei~~~~~~-g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~ 438 (574)
||+||.||++++|+++.++.+ +|. ++.+|++++|.++|+ +|..+|+ .|+|+..+++++++
T Consensus 626 mki~f~aLy~tineia~~a~~~qGr-~v~~~L~~~W~~l~~------~w~~~g~------------~s~~~~~ilv~~~~ 686 (800)
T PLN02592 626 GEELVGLLLGTLNQLSLDALEAHGR-DISHLLRHAWEMWLL------KWLLEGD------------GRQGEAELLVKTIN 686 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHH------HHHhcCc------------eeccchhhHHHHHH
Confidence 999999999999999999888 433 699999999999998 5666665 44566667777777
Q ss_pred -hcCCccccHHHHhhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchhhHHHHhcC-CCHHHHHHHHHHHHHHHHH
Q 008206 439 -GLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYG-VSEEEACNKIKGMVEIEWM 516 (574)
Q Consensus 439 -~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V~cyMke~g-~S~eeA~~~i~~~ie~~wk 516 (574)
.+|.. +|+++++ +|++.++++.+.||+||++|+++|+.. .| +|+ +|.+++.+.|+.+++
T Consensus 687 l~~g~~-lsee~l~----~~~~~~l~~li~Rl~nDl~t~~~e~~~-------------~~~~~~-~a~~~~~~~ie~~~~ 747 (800)
T PLN02592 687 LTAGRS-LSEELLA----HPQYEQLAQLTNRICYQLGHYKKNKVH-------------INTYNP-EEKSKTTPSIESDMQ 747 (800)
T ss_pred HhcCCC-CCHHHcc----chhHHHHHHHHHHHHHhhhHHhhhccc-------------CCcccH-HHHHHHHHHHHHHHH
Confidence 56998 9999875 699999999999999999999998841 23 455 899999999999999
Q ss_pred HHHHhhcC--CCCCChhHHHHHHHHhhhhccccccCCCCCCCChhHHHHHHhhhcccCC
Q 008206 517 NINEEIQD--PNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLP 573 (574)
Q Consensus 517 ~ln~e~l~--~~~~p~~~~~~~lN~aR~~~~~Y~~~Dgyt~~~~~~k~~i~~ll~~pi~ 573 (574)
++.+.+++ ++.+|++|++.+||++| +||.. ||+.| ..|+++|..+|++||+
T Consensus 748 eL~~lvl~~~~~~vp~~cK~~f~~~~k---~fy~~--~~~~~-~~~~~~i~~vl~epv~ 800 (800)
T PLN02592 748 ELVQLVLQNSSDDIDPVIKQTFLMVAK---SFYYA--AYCDP-GTINYHIAKVLFERVA 800 (800)
T ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHH---HHHHh--hcCCH-HHHHHHHHHHhCCCCC
Confidence 99999996 35699999999999999 45655 99998 5799999999999985
No 4
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=100.00 E-value=2.7e-56 Score=428.39 Aligned_cols=174 Identities=52% Similarity=0.856 Sum_probs=148.1
Q ss_pred CCCCccc-----ccCCcccchhHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHHHhCcccCcHHHHHHHHHHHH
Q 008206 30 WGDHFIN-----VSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIY 104 (574)
Q Consensus 30 W~~~f~~-----~~~~~~~~~~~~~~~~~~lk~~vr~~l~~~~~~~~d~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~ 104 (574)
|||+||+ ++++.....+.+.+++++||++||.||..... |++++|+|||+||||||+|||++||+++|++||
T Consensus 1 W~d~fl~s~s~~~~~~~~~~~~~~~~~~~~Lk~~v~~~l~~~~~---d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~ 77 (183)
T PF01397_consen 1 WGDDFLQSLSPSYTACMQSEDEKCKERAEELKEEVRNMLPASYP---DPLEKLELIDTLQRLGISYHFEDEIKEILDSIY 77 (183)
T ss_dssp TTHHHHHHTBHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHSSSS---HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHH
T ss_pred CCCceecCCCCcchhccchhHHHHHHHHHHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHh
Confidence 9999994 32221233568899999999999999996532 799999999999999999999999999999999
Q ss_pred hhc-CCCCCCCCCCCCCchHHHHHHHHHHHhcCceechhhhccccccccccccccccChHHHHhHhhhccCCCCCchHHH
Q 008206 105 DSH-VNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILE 183 (574)
Q Consensus 105 ~~~-~~~~~~~~~~~~~Dl~~~al~FRlLR~hGy~vS~dvf~~F~d~~g~F~~~~~~dv~glL~LYeAs~l~~~gE~iLd 183 (574)
+.| ..+. . ..||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||||||||+++|||+|||
T Consensus 78 ~~~~~~~~---~---~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~g~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLd 151 (183)
T PF01397_consen 78 RSWDEDNE---E---IDDLYTTALRFRLLRQHGYYVSSDVFNKFKDEKGNFKESLSNDVKGLLSLYEASHLRFHGEDILD 151 (183)
T ss_dssp HTTTTTSH---T---SSCHHHHHHHHHHHHHTT----GGGGGGGBETTSSBSGGGGGHHHHHHHHHHHHTT--TT-HHHH
T ss_pred hhcccccc---c---cCchhHHHHHHHHHHHcCCcccHHHHhCcccCCCccchhhhHhHHHHHHHHHHHHccCCChHHHH
Confidence 998 3321 1 35999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCC---chHHHHHHHc
Q 008206 184 EACEFSRKHLKSLLSHLST---PLVDQVEHSL 212 (574)
Q Consensus 184 ea~~ft~~~L~~~~~~~~~---~l~~~V~~aL 212 (574)
||+.||++||++.+++..+ +|+++|+|||
T Consensus 152 eA~~Ft~~~L~~~~~~~~~~~~~L~~~V~~AL 183 (183)
T PF01397_consen 152 EARAFTTKHLKSLLSNLSIPDPHLAKEVKHAL 183 (183)
T ss_dssp HHHHHHHHHHHHHHTTTCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCcHHHHHHHHHhC
Confidence 9999999999999986543 4999999997
No 5
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=100.00 E-value=2.2e-48 Score=394.44 Aligned_cols=269 Identities=29% Similarity=0.391 Sum_probs=247.8
Q ss_pred HHHHHhhchHHHHHhhHHHHHHHHHHHhHhcCcCCChhhhhhHhhhhhhhhccccCCCcchhhHHHHHHHHHHHhhhhhh
Q 008206 243 ILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIY 322 (574)
Q Consensus 243 lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~f 322 (574)
+|+|||+|||+||++||+|++++++||+++|+..+.+.+|+|++.++|+.++++++|+.+..|+++||+++|+|++||+|
T Consensus 1 ~~~la~~~~~~~~~~~~~e~~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~aa~~~P~~~~~l~~~a~~~~w~f~~DD~~ 80 (270)
T PF03936_consen 1 YLELAKRDFPHCQALHQQELEEIDRWVKEFGLFDEDKAARQRFRQAYFGLLAARFYPDSSDELLAAADWMAWLFIFDDFF 80 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHTTSHHHHHHHHHHHHHHHHSGCGHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhhcHhhHHHHHHHHHHHHHHHHHcCCccccccchhhhhHhHHhhhhheeCCCcHHHHHHHHhhchheeeeeecc
Confidence 68999999999999999999999999999999667777899999999999999999996666779999999999999999
Q ss_pred cccCCHHHHHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHH
Q 008206 323 DVYGTLEELKLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAY 401 (574)
Q Consensus 323 D~ygt~eEl~~ft~ai~~~~~~~~rWD~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~-g~~~~~~~~~k~~~~~~~~a~ 401 (574)
|.+|+.++++.|+++++ ||++.....+|+++++++.++.++++++...+.+ .+...+..+++++|.+|++++
T Consensus 81 D~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (270)
T PF03936_consen 81 DDGGSAEELEALTDAVE-------RWDPNSGDPLPDPDKPLFRALADIWNRIAARMSPAQRRRDQIKRFRNSWREYLNAY 153 (270)
T ss_dssp HTTSHHHHHHHHHHHHH-------HTSSGGGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHh-------cccccccccccchhHHHHHHHHHHHHHHHHHhhhhhcccHHhhHHHHHHHHHHHHH
Confidence 99999999999999999 9998777889999999999999999999988877 221025667999999999999
Q ss_pred HHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHhhhcchhHHHHHHHHHHHHhcCCcchhhhhh
Q 008206 402 FVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQE 481 (574)
Q Consensus 402 l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~ 481 (574)
++|++|+..|++||++||+++|+.|+|++++++++.++||.. +++...+++.++|.+.++++.+++|+|||+||+||++
T Consensus 154 ~~e~~~~~~~~~ps~eeYl~~R~~t~g~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~KE~~ 232 (270)
T PF03936_consen 154 LWEARWRERGRIPSLEEYLEMRRHTSGVYPCLALIEFALEFA-LGELPPEVLEHPPMLRRLAADIIRLVNDLYSYKKEIA 232 (270)
T ss_dssp HHHHHHHHTTS--SHHHHHHHHHHHTSHHHHHHHHHHHCSSC-HTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCCHHHHHHhccccccccHHHHHHHHhCCCc-cccccHHHHHhchHHHHHHHHHHHHhcccchhhcchh
Confidence 999999999999999999999999999999999999999776 7766667767778899999999999999999999999
Q ss_pred cCCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 008206 482 RGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNIN 519 (574)
Q Consensus 482 rG~~~n~V~cyMke~g~S~eeA~~~i~~~ie~~wk~ln 519 (574)
+|+.+|.|.|+|+++|+|.|+|++++.+|+++++++||
T Consensus 233 ~g~~~N~v~~l~~~~~~s~e~A~~~v~~~~~~~~~efn 270 (270)
T PF03936_consen 233 RGDVHNLVVVLMNEHGLSLEEAVDEVAEMINECIREFN 270 (270)
T ss_dssp TTSCCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccHHHHhhhhcCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999998
No 6
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=100.00 E-value=2.1e-45 Score=375.32 Aligned_cols=282 Identities=50% Similarity=0.901 Sum_probs=264.8
Q ss_pred hhHHHHHHHHHHHhHhcCcCCChhhhhhHhhhhhhhhccccCCCcchhhHHHHHHHHHHHhhhhhhcccCCHHHHHHHHH
Q 008206 257 LHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTH 336 (574)
Q Consensus 257 ~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ 336 (574)
.||+|++++++||+++||....+++|.+...+|+|+++++++|+.+..|+++||+++|+|++||+||.+|+.+++..+++
T Consensus 1 ~~~~e~~~~~~W~~~~~l~~~~~~~r~~~~~~~~~~a~~~p~~~~~~~l~~~a~~~~~~f~~DD~~D~~~~~~~~~~~~~ 80 (284)
T cd00868 1 LHQEELKELSRWWKELGLQEKLPFARDRLVECYFWAAGSYFEPQYSEARIALAKTIALLTVIDDTYDDYGTLEELELFTE 80 (284)
T ss_pred CCHHHHHHHHHHHHHhCCcccCCchhhHhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHH
Confidence 59999999999999999975555999999999999999999999899999999999999999999999999999999999
Q ss_pred HHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 008206 337 AIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPT 415 (574)
Q Consensus 337 ai~~~~~~~~rWD~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~-g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT 415 (574)
+++ ||+....+.+|+++++++.++.++++++...+.+ ++. .+..++++.|.+++.++.+|++|+..|++||
T Consensus 81 ~~~-------~~~~~~~~~~p~~~~~~~~~l~d~~~r~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~~e~~~~~~~~~p~ 152 (284)
T cd00868 81 AVE-------RWDISAIDELPEYMKPVFKALYDLVNEIEEELAKEGGS-ESLPYLKEAWKDLLRAYLVEAKWANEGYVPS 152 (284)
T ss_pred HHH-------hcChhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 999 9999888899999999999999999999998887 554 6999999999999999999999999999999
Q ss_pred hHHHHhhhccccchhhHHHHHHHhcCCccccHHHHhhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchhhHHHHh
Q 008206 416 FEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQ 495 (574)
Q Consensus 416 ~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V~cyMke 495 (574)
++||+.+|+.|+|+++++.++++++|.. +|++.+.+.+...++++.++.+++|+||++||+||+.+|+.+|+|.|||++
T Consensus 153 ~~eYl~~R~~~~g~~~~~~l~~~~~g~~-l~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~N~v~vl~~~ 231 (284)
T cd00868 153 FEEYLENRRVSIGYPPLLALSFLGMGDI-LPEEAFEWLPSYPKLVRASSTIGRLLNDIASYEKEIARGEVANSVECYMKE 231 (284)
T ss_pred HHHHHHhceehhhHHHHHHHHHHHcCCC-CCHHHHHHhhhhHHHHHHHHHHHHHhccchHHHHHHccCCcccHHHHHHhc
Confidence 9999999999999999999999999999 998555555888999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCChhHHHHHHHHhhhhcccc
Q 008206 496 YGVSEEEACNKIKGMVEIEWMNINEEIQDP-NHPPLQWLLPSLNLARMMVVLY 547 (574)
Q Consensus 496 ~g~S~eeA~~~i~~~ie~~wk~ln~e~l~~-~~~p~~~~~~~lN~aR~~~~~Y 547 (574)
+|+|.++|++++.++++++|+++++.+.+. ++.|+.+++.+.|.+|.....|
T Consensus 232 ~~~~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~w~ 284 (284)
T cd00868 232 YGVSEEEALEELRKMIEEAWKELNEEVLKLSSDVPRAVLETLLNLARGIYVWY 284 (284)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhcC
Confidence 999999999999999999999999999863 4678999999999999887654
No 7
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=100.00 E-value=4.8e-34 Score=295.66 Aligned_cols=249 Identities=17% Similarity=0.104 Sum_probs=216.9
Q ss_pred HHHH-HHHHHhHhcCcCCChhhhhhHhhhhhhhhccccCCCcchhhH-HHHHHHHHHHhhhhhhccc-CCHHHHHHHHHH
Q 008206 261 ELSE-ISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRK-FMTKIIAIASVIDDIYDVY-GTLEELKLFTHA 337 (574)
Q Consensus 261 El~~-lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl-~laK~~~l~~viDD~fD~y-gt~eEl~~ft~a 337 (574)
+++. ...|.++.|+. .-+.+|+++..++|+.++.++.|+++.+|+ ++|++++|+|++||+||.. +++++.+.+++.
T Consensus 14 ~~~~~~~~w~~~~~l~-~~~~~~~~~~~~~~~~~~a~~~P~a~~~~l~l~~~~~~w~f~~DD~~D~~~~~~~~~~~~~~~ 92 (303)
T cd00687 14 EAQDEYLEWVLEEMLI-PSEKAEKRFLSADFGDLAALFYPDADDERLMLAADLMAWLFVFDDLLDRDQKSPEDGEAGVTR 92 (303)
T ss_pred HHHHHHHHHHHHcCCC-CcchhHHHHhcCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcccCCccccCHHHHHHHHHH
Confidence 4333 45799999774 335899999999999888899999999999 7779999999999999987 589999999988
Q ss_pred HHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChH
Q 008206 338 IESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFE 417 (574)
Q Consensus 338 i~~~~~~~~rWD~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~e 417 (574)
+. ++.......-|....++..++.+++.++...+.+ .+..++++.|.+|+.++++|++|+.+|++||++
T Consensus 93 ~~-------~~~~~~~~~~~~~~~p~~~~~~d~~~r~~~~~~~----~~~~r~~~~~~~~~~a~~~e~~~~~~~~~psl~ 161 (303)
T cd00687 93 LL-------DILRGDGLDSPDDATPLEFGLADLWRRTLARMSA----EWFNRFAHYTEDYFDAYIWEGKNRLNGHVPDVA 161 (303)
T ss_pred HH-------hccCCCCCCCCCCCCHHHHHHHHHHHHhccCCCH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHH
Confidence 88 5543321111467788999999999888654332 578999999999999999999999999999999
Q ss_pred HHHhhhccccchhhHHHHHHHhcCCccccHHHHhhhcchhHHHHHHHHHHHHhcCCcchhhhh-hcCCCCchhhHHHHhc
Q 008206 418 ECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQ-ERGDAPSSVECYVQQY 496 (574)
Q Consensus 418 EYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~-~rG~~~n~V~cyMke~ 496 (574)
||+++|+.|+|+.+++.++++++|.. +|+++.+. +...+++++++.+++|+|||+||+||+ +.|+.+|+|.|+|+++
T Consensus 162 eYl~~R~~~~g~~~~~~l~~~~~g~~-lp~~~~~~-~~~~~l~~~~~~~~~l~NDl~S~~KE~~~~g~~~N~V~vl~~~~ 239 (303)
T cd00687 162 EYLEMRRFNIGADPCLGLSEFIGGPE-VPAAVRLD-PVMRALEALASDAIALVNDIYSYEKEIKANGEVHNLVKVLAEEH 239 (303)
T ss_pred HHHHHhhhcccccccHHHHHHhcCCC-CCHHHHhC-hHHHHHHHHHHHHHHHHHHHHhhHHHHHhCCccchHHHHHHHHc
Confidence 99999999999999999999999998 99998765 556779999999999999999999999 8999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhc
Q 008206 497 GVSEEEACNKIKGMVEIEWMNINEEIQ 523 (574)
Q Consensus 497 g~S~eeA~~~i~~~ie~~wk~ln~e~l 523 (574)
|+|.|+|++++.++++++++++.+..-
T Consensus 240 g~s~~eA~~~~~~~~~~~~~~f~~~~~ 266 (303)
T cd00687 240 GLSLEEAISVVRDMHNERITQFEELEA 266 (303)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998877543
No 8
>PLN02150 terpene synthase/cyclase family protein
Probab=99.97 E-value=1.2e-31 Score=232.10 Aligned_cols=95 Identities=40% Similarity=0.688 Sum_probs=92.5
Q ss_pred hhcCCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhccc-cccCCCCCCCCh
Q 008206 480 QERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVL-YQNGDGYTNSTG 558 (574)
Q Consensus 480 ~~rG~~~n~V~cyMke~g~S~eeA~~~i~~~ie~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~-Y~~~Dgyt~~~~ 558 (574)
++|||++|+|+|||||||+|+|||+++++++|+++||+||+|+++++++|++++++++|+||+++|+ |++|||||.+++
T Consensus 1 ~~rg~vaSsIeCYMke~g~seeeA~~~i~~li~~~WK~iN~e~l~~~~~p~~~~~~~~NlaR~~~~~~Y~~~Dg~t~~~~ 80 (96)
T PLN02150 1 MRRGEVANGVNCYMKQHGVTKEEAVSELKKMIRDNYKIVMEEFLTIKDVPRPVLVRCLNLARLIDVYCYNEGDGFTYPHG 80 (96)
T ss_pred CCCCcchHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhheecCCCCCCCCcH
Confidence 5799999999999999999999999999999999999999999999999999999999999999999 999999999888
Q ss_pred hHHHHHHhhhcccCCC
Q 008206 559 KTKDRIASLLVDPLPM 574 (574)
Q Consensus 559 ~~k~~i~~ll~~pi~~ 574 (574)
.+|++|++||++|||+
T Consensus 81 ~~K~~I~sLlv~pi~i 96 (96)
T PLN02150 81 KLKDLITSLFFHPLPL 96 (96)
T ss_pred HHHHHHHHHhccCCCC
Confidence 8999999999999986
No 9
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.84 E-value=9.1e-21 Score=185.08 Aligned_cols=229 Identities=28% Similarity=0.342 Sum_probs=184.5
Q ss_pred hhhccccCCCcchhhHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHH
Q 008206 291 WILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDV 370 (574)
Q Consensus 291 w~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~~~~~~~~rWD~~~~~~lpe~mk~~~~al~~~ 370 (574)
+.++.++.|+++..|..++++.+|++++||++|..++..........+. ....|..+...+..+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 68 (243)
T cd00385 2 RPLAVLLEPEASRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAVA-------------IDGLPEAILAGDLLLADA 68 (243)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhhHH-------------hcCchHHHHHHHHHHHHH
Confidence 4566778898889999999999999999999998887666555443322 234566777788888888
Q ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHH
Q 008206 371 VKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRAL 450 (574)
Q Consensus 371 ~~ei~~~~~~g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~ 450 (574)
++++..... + .+..++.+.|.+++.|+..|+.|... ++||++||+..+..++ +.++..+..++++.. .++ .
T Consensus 69 ~~~~~~~~~---~-~~~~~~~~~~~~~~~g~~~d~~~~~~-~~~t~~ey~~~~~~~t-~~~~~~~~~~~~~~~-~~~--~ 139 (243)
T cd00385 69 FEELAREGS---P-EALEILAEALLDLLEGQLLDLKWRRE-YVPTLEEYLEYCRYKT-AGLVGALCLLGAGLS-GGE--A 139 (243)
T ss_pred HHHHHhCCC---H-HHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHhH-HHHHHHHHHHHHHHh-CCC--H
Confidence 888854322 2 57899999999999999999999876 8999999999999998 555666666766665 555 3
Q ss_pred hhhcchhHHHHHHHHHHHHhcCCcchhhhhhcC-CCCchhhHHHHhcCC------------CHHHHHHHHHHHHHHHHHH
Q 008206 451 DWAISVPKIIRSSSLIARLDDDVHTYKVEQERG-DAPSSVECYVQQYGV------------SEEEACNKIKGMVEIEWMN 517 (574)
Q Consensus 451 e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG-~~~n~V~cyMke~g~------------S~eeA~~~i~~~ie~~wk~ 517 (574)
.+.+...++....+.+.+|.||+.|+.+|.++| ...|++.++|+++|+ +.++|.+++.++++++++.
T Consensus 140 ~~~~~~~~~~~~~g~~~ql~nDl~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 219 (243)
T cd00385 140 ELLEALRKLGRALGLAFQLTNDLLDYEGDAERGEGKCTLPVLYALEYGVPAEDLLLVEKSGSLEEALEELAKLAEEALKE 219 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCchHHHHHHHHHhCChhhHHHHHHHCChHHHHHHHHHHHHHHHHHH
Confidence 344567888999999999999999999999996 678999999999999 8899999999999999999
Q ss_pred HHHhhcCCCCCChhHHHHHHHHhh
Q 008206 518 INEEIQDPNHPPLQWLLPSLNLAR 541 (574)
Q Consensus 518 ln~e~l~~~~~p~~~~~~~lN~aR 541 (574)
+++........+..+++.+.++.|
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~ 243 (243)
T cd00385 220 LNELILSLPDVPRALLALALNLYR 243 (243)
T ss_pred HhcCCCCcHHHHHHHHHHHHHHhC
Confidence 998766533456677777777653
No 10
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4.2.3.6). TRI5 encodes the enzyme trichodiene synthase, which has been shown to catalyse the first step in the trichothecene pathways of Fusarium and Trichothecium species [, ].; GO: 0045482 trichodiene synthase activity, 0016106 sesquiterpenoid biosynthetic process; PDB: 1YYT_A 2PS5_A 2AEL_A 1YYS_A 1YJ4_A 2Q9Y_A 2PS4_A 2AEK_B 1KIY_B 2PS7_A ....
Probab=97.56 E-value=0.00062 Score=72.25 Aligned_cols=195 Identities=12% Similarity=0.110 Sum_probs=114.1
Q ss_pred CCCcchh-hHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHHH
Q 008206 298 EPKYSTT-RKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMED 376 (574)
Q Consensus 298 eP~~s~~-Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~~~~~~~~rWD~~~~~~lpe~mk~~~~al~~~~~ei~~ 376 (574)
.|..+.. +..++-+.++++++||.++.. .+++..|-+.+-. ... + | .++...+.+.+.++.+
T Consensus 78 y~~~~~evqv~IaiyT~yvi~iDD~~~~~--~~~l~~F~~~l~~---------Gq~--Q-~---~p~L~~~~~~L~~~~~ 140 (376)
T PF06330_consen 78 YPHLPKEVQVAIAIYTTYVIIIDDSSQEP--SDDLRTFHQRLIL---------GQP--Q-K---HPLLDGFASLLREMWR 140 (376)
T ss_dssp STTS-HHHHHHHHHHHHHHHHHTT--S-S--HHHHTTHHHHHHH---------T------S---SHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHHHhcccccccc--cHHHHHHHHHHhc---------CCC--C-C---CHHHHHHHHHHHHHHH
Confidence 3666655 568899999999999998765 4777777766651 111 1 1 1344555555554432
Q ss_pred HHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHhhhcch
Q 008206 377 KLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISV 456 (574)
Q Consensus 377 ~~~~g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~ 456 (574)
.. |. ++-.-+.++--+++.+..-|.+.. +-.|.-..|-..-+.=+|.....+...+-. .. -|+. ...
T Consensus 141 ~f--gp--f~anmI~~STLdFi~g~~LE~~~f--~~~p~A~~FP~fLR~ktGlsEaYA~FiFPk-~~-fpe~-----~~~ 207 (376)
T PF06330_consen 141 HF--GP--FCANMIVKSTLDFINGCWLEQKNF--HGSPGAPDFPDFLRRKTGLSEAYAFFIFPK-AL-FPEV-----EYF 207 (376)
T ss_dssp TS---H--HHHHHHHHHHHHHHHHHHHHTTT------TT-TTHHHHHHHHHH-HHHHHHHT--T-TT-S-TT-----TTH
T ss_pred Hc--ch--HHHHHHHHHHHHHHHHHHhhcccC--CCCCCCccccHHHHhccCcchhheeeeccc-cc-CChH-----HHH
Confidence 21 32 566678888899999999887643 223443344444444455555544333311 11 2222 223
Q ss_pred hHH---HHHHHHHHHHhcCCcchhhhhh-cCCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 008206 457 PKI---IRSSSLIARLDDDVHTYKVEQE-RGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEI 522 (574)
Q Consensus 457 p~i---~~~~~~i~RL~NDI~S~~~E~~-rG~~~n~V~cyMke~g~S~eeA~~~i~~~ie~~wk~ln~e~ 522 (574)
..+ +--....+-++|||.||=||.- .|+..|.|.-+-.-+|+|.-+|.+.+.+-.-.+-+++.+..
T Consensus 208 ~~y~~AIpdl~~fi~~~NDILSFYKE~l~a~E~~NyI~n~A~~~g~S~~eaL~~l~~eti~a~~rv~~vL 277 (376)
T PF06330_consen 208 IQYTPAIPDLMRFINYVNDILSFYKEELVAGETGNYIHNRARVHGVSILEALRELTDETIEAVERVRRVL 277 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSSHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhhcccccccchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333 3334444568999999999977 78889999877777899999999998776666766665543
No 11
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1. This CD includes the terpenoid cyclase, trichodiene synthase, which catalyzes the cyclization of farnesyl diphosphate (FPP) to trichodiene using a cis-trans pathway, and is the first committed step in the biosynthesis of trichothecene toxins and antibiotics. As with other enzymes with the 'terpenoid synthase fold', this enzyme has two conserved metal binding motifs that coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function as homodimers and are found in several genera of fungi.
Probab=97.27 E-value=0.0051 Score=64.54 Aligned_cols=191 Identities=13% Similarity=0.051 Sum_probs=115.0
Q ss_pred cchhhH-HHHHHHHHHHhhhhhhcccCCHHHHHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHHHHHh
Q 008206 301 YSTTRK-FMTKIIAIASVIDDIYDVYGTLEELKLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKLV 379 (574)
Q Consensus 301 ~s~~Rl-~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~~~~~~~~rWD~~~~~~lpe~mk~~~~al~~~~~ei~~~~~ 379 (574)
.|..=. .++-..+.++++||.-|.. .+.++.|.+-+.+ .. ...-| +...+.+.+..+....
T Consensus 81 ~skev~~~isi~~tY~~~lDD~~~e~--~~~m~~f~~dL~~---------G~-~qkhP-----~l~~v~~~l~~~lr~f- 142 (357)
T cd00686 81 VSKECMADLSIHYTYTLVLDDSKDDP--YPTMVNYFDDLQA---------GR-EQAHP-----WWALVNEHFPNVLRHF- 142 (357)
T ss_pred CCHHHHHHHHHHHheeeEeccccccc--chHHHHHHHHHhc---------CC-CCCCc-----HHHHHHHHHHHHHHHh-
Confidence 555533 5566677888999997643 3456667666661 11 11112 2222222222221111
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHhhhcchhHH
Q 008206 380 NKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKI 459 (574)
Q Consensus 380 ~g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i 459 (574)
|. ++..-+.++--+++.+..-|... .+..|.-.+|-...+.=+|.+-+.+... -|++.|.-...+..+
T Consensus 143 -Gp--F~s~~IikSTLdFv~g~~iEq~n--f~~~p~A~~fP~ylR~ksGl~E~yA~Fi-------FPk~~FpE~~~~~qi 210 (357)
T cd00686 143 -GP--FCSLNLIRSTLDFFEGCWIEQYN--FGGFPGSHDYPQFLRRMNGLGHCVGASL-------WPKEQFNERSLFLEI 210 (357)
T ss_pred -hh--hhHHHHHHHHHHHHHHHHHhhhc--cCCCCCCcccchHHHhccCCcceeEEEe-------cchhhCchHhhHHHh
Confidence 32 45666778888899999988653 3446766677776666666554433222 344443222223333
Q ss_pred HHHHHH---HHHHhcCCcchhhhhhc-CCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh
Q 008206 460 IRSSSL---IARLDDDVHTYKVEQER-GDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEE 521 (574)
Q Consensus 460 ~~~~~~---i~RL~NDI~S~~~E~~r-G~~~n~V~cyMke~g~S~eeA~~~i~~~ie~~wk~ln~e 521 (574)
..+... ..-++|||.||=||--. ++..|.|.-|-+.+|+|..+|.+.+..-.-.+-+++.+-
T Consensus 211 ~~AIp~~~~~i~~~NDILSFYKEe~~~~E~~n~V~Nya~~~GiS~~eAL~~lt~dTv~~s~rv~~V 276 (357)
T cd00686 211 TSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNYVVSDEISLHEALEKLTQDTLHSSKQMVAV 276 (357)
T ss_pred hHHHHHHHHHHHhhhhhhheehhhcccccccchHHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443 34589999999999854 456788888888899999999998777666666666544
No 12
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=93.05 E-value=7.1 Score=39.67 Aligned_cols=199 Identities=19% Similarity=0.212 Sum_probs=105.6
Q ss_pred chhhHHHHHHHHHHHhhhhhhcccCCHH----HHHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHHHH
Q 008206 302 STTRKFMTKIIAIASVIDDIYDVYGTLE----ELKLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDK 377 (574)
Q Consensus 302 s~~Rl~laK~~~l~~viDD~fD~ygt~e----El~~ft~ai~~~~~~~~rWD~~~~~~lpe~mk~~~~al~~~~~ei~~~ 377 (574)
...|..+.-+-.+.-.+||+-|...... .++-+-+++. ..-....+..+....++..++..+.++..
T Consensus 17 ~~~R~~~~alyaf~r~~d~i~D~~~~~~~~~~~L~~w~~~l~-------~~~~~~~~~~~~~~~pv~~~l~~~~~~~~-- 87 (267)
T PF00494_consen 17 KEKRPAVFALYAFCRELDDIVDEPSDPEEARARLQWWRDALN-------SIFASYEDSLPEPSHPVARALADLVRRYG-- 87 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTSS-HSCHHHHHHHHHHHH-------HHHH-TSTHHHSSHHHHHHHHHHHHCCSH--
T ss_pred HHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHH-------HHhhhhhhccCCCcCHHHHHHHHHHHHHh--
Confidence 3456666778888889999999776432 3444555555 21111111233444567766665553321
Q ss_pred HhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHhhhcchh
Q 008206 378 LVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVP 457 (574)
Q Consensus 378 ~~~g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p 457 (574)
--++.+.++++|+.+.. ....++|++|+......++|....+.+..++.... ..++.+.
T Consensus 88 -----------l~~~~l~~li~~~~~dl---~~~~~~t~~~L~~Y~~~vag~vg~l~~~~~~~~~~--~~~~~~~----- 146 (267)
T PF00494_consen 88 -----------LPREPLLELIDGMEMDL---EFTPYETFADLERYCYYVAGSVGLLLLQLLGAHDP--DEAARDA----- 146 (267)
T ss_dssp -----------HHHHHHHHHHHHHHHCT---T-S--SSHHHHHHHHHHHTHHHHHHHHHHHHSSTS--HHHHHHH-----
T ss_pred -----------hhHHHHHHHHHHhcccc---cCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc--hhhHHHH-----
Confidence 23455677777776333 33558899999999999998877777766665322 1123332
Q ss_pred HHHHHHHHHHHHhcCCcchhhh-hhcCCC--CchhhHHHHhcCCCHHHHHHH----------HHHHHHHHHHHHHHhhcC
Q 008206 458 KIIRSSSLIARLDDDVHTYKVE-QERGDA--PSSVECYVQQYGVSEEEACNK----------IKGMVEIEWMNINEEIQD 524 (574)
Q Consensus 458 ~i~~~~~~i~RL~NDI~S~~~E-~~rG~~--~n~V~cyMke~g~S~eeA~~~----------i~~~ie~~wk~ln~e~l~ 524 (574)
....+..+-+.|=+...... ..+|-+ +.- .|+++|+|.++-... +..+++.+...+.+..--
T Consensus 147 --a~~lG~alql~nilRd~~~D~~~~gR~ylP~d---~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~ 221 (267)
T PF00494_consen 147 --ARALGRALQLTNILRDIPEDALRRGRIYLPLD---DLRRFGVTPEDLLAGRPRSERLRALIRELAARARAHLDEARAG 221 (267)
T ss_dssp --HHHHHHHHHHHHHHHTHHHH-HHTT---S-HH---HHHHTTSSHHHHHHHG-GGHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred --HHHHHHHHHHHHHHHHhHHHHHhcccccCCch---hHHHcCCCHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333333333333333444 445543 333 467899988865432 445555555444443322
Q ss_pred CCCC-ChhHHHH
Q 008206 525 PNHP-PLQWLLP 535 (574)
Q Consensus 525 ~~~~-p~~~~~~ 535 (574)
...+ |..+...
T Consensus 222 ~~~l~~~~~~~~ 233 (267)
T PF00494_consen 222 LSALPPPRARPA 233 (267)
T ss_dssp GGGS--TTHHHH
T ss_pred HHHcCCHhhhHH
Confidence 2345 4434433
No 13
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=91.52 E-value=2.5 Score=41.90 Aligned_cols=118 Identities=14% Similarity=0.151 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhcc-ccchhhHHHHHHHhcCCccccHHHHhhhcchhHHHHHHH
Q 008206 386 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTM-SSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSS 464 (574)
Q Consensus 386 ~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~-Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~ 464 (574)
....+.+....++.|...+..|... ..||.++|++.... |+++....+......+.. +++.. ....++.+..+
T Consensus 86 ~~~~~~~~~~~~~~Gq~~Dl~~~~~-~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~lG 159 (236)
T cd00867 86 ALELFAEALRELLEGQALDLEFERD-TYETLDEYLEYCRYKTAGLVGLLCLLGAGLSGA--DDEQA---EALKDYGRALG 159 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCc--CHHHH---HHHHHHHHHHH
Confidence 4566778899999999999988644 57999999999888 766654433333222322 22222 23456778888
Q ss_pred HHHHHhcCCcchhhhh----------hcCCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008206 465 LIARLDDDVHTYKVEQ----------ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 520 (574)
Q Consensus 465 ~i~RL~NDI~S~~~E~----------~rG~~~n~V~cyMke~g~S~eeA~~~i~~~ie~~wk~ln~ 520 (574)
+..-+.||+..+.... ++|.. +...+++ .+.+.+.++.+.+.+..
T Consensus 160 ~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~-tlp~~~~----------~~~~~~~~~~~~~~~~~ 214 (236)
T cd00867 160 LAFQLTDDLLDVFGDAEELGKVGSDLREGRI-TLPVILA----------RERAAEYAEEAYAALEA 214 (236)
T ss_pred HHHHHHHHhccccCChHHHCccHHHHHcCCc-hHHHHHH----------HHHHHHHHHHHHHHHHh
Confidence 8899999999886654 45554 5555555 55666666766666554
No 14
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=88.60 E-value=31 Score=35.27 Aligned_cols=195 Identities=17% Similarity=0.164 Sum_probs=99.2
Q ss_pred hhhHHHHHHHHHHHhhhhhhcccCCHHH----HHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHHHHH
Q 008206 303 TTRKFMTKIIAIASVIDDIYDVYGTLEE----LKLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKL 378 (574)
Q Consensus 303 ~~Rl~laK~~~l~~viDD~fD~ygt~eE----l~~ft~ai~~~~~~~~rWD~~~~~~lpe~mk~~~~al~~~~~ei~~~~ 378 (574)
..|-.++-+-.+.-.+||+-|..++.++ |+-+-+++. . ....-| -.++..++.+++...
T Consensus 18 ~~R~~~~alYaf~r~~d~i~D~~~~~~~~~~~L~~w~~~l~-------~----~~~g~~--~~pv~~al~~~~~~~---- 80 (266)
T TIGR03465 18 ERRRAMTALYAFCREVDDIVDEDSDPEVAQAKLAWWRAEID-------R----LYAGAP--SHPVARALADPARRF---- 80 (266)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHH-------H----HhCCCC--CChHHHHHHHHHHHc----
Confidence 3566666777888889999997554432 222222222 0 000112 235666666555432
Q ss_pred hcCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHhhhcchhH
Q 008206 379 VNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPK 458 (574)
Q Consensus 379 ~~g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~ 458 (574)
+- . ++.+.+++.++.+.. ....++|++|+......+.|.-..+++-.++. . ++.....
T Consensus 81 ---~l--~----~~~~~~li~g~~~Dl---~~~~~~t~~dL~~Y~~~vAg~vg~l~~~llg~--~--~~~~~~~------ 138 (266)
T TIGR03465 81 ---DL--P----QEDFLEVIDGMEMDL---EQTRYPDFAELDLYCDRVAGAVGRLSARIFGA--T--DARTLEY------ 138 (266)
T ss_pred ---CC--C----HHHHHHHHHHHHHHc---CCCCCCCHHHHHHHHHHhHHHHHHHHHHHhCC--C--ChhHHHH------
Confidence 11 1 234667777765333 34467899999988888877766665555532 2 2222222
Q ss_pred HHHHHHHHHHHhcCCcchhhhhhcCCC--CchhhHHHHhcCCCHH---------HHHHHHHHHHHHHHHHHHHhhcCCCC
Q 008206 459 IIRSSSLIARLDDDVHTYKVEQERGDA--PSSVECYVQQYGVSEE---------EACNKIKGMVEIEWMNINEEIQDPNH 527 (574)
Q Consensus 459 i~~~~~~i~RL~NDI~S~~~E~~rG~~--~n~V~cyMke~g~S~e---------eA~~~i~~~ie~~wk~ln~e~l~~~~ 527 (574)
....+...-|.|=+.......++|-+ +-- .|.++|+|.+ ...+-+..+++.+..-+.+..--...
T Consensus 139 -a~~lG~AlqltnilRdv~eD~~~gR~ylP~~---~l~~~gv~~~~l~~~~~~~~~~~~~~~l~~~A~~~l~~a~~~~~~ 214 (266)
T TIGR03465 139 -AHHLGRALQLTNILRDVGEDARRGRIYLPAE---ELQRFGVPAADILEGRYSPALAALCRFQAERARAHYAEADALLPA 214 (266)
T ss_pred -HHHHHHHHHHHHHHHHhHHHHhCCCeecCHH---HHHHcCCCHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 12222222222222222233456654 222 3577898876 33455566666666555544322244
Q ss_pred CChhHHHHHHHHh
Q 008206 528 PPLQWLLPSLNLA 540 (574)
Q Consensus 528 ~p~~~~~~~lN~a 540 (574)
+|......++-.+
T Consensus 215 ~p~~~~~~~~~~~ 227 (266)
T TIGR03465 215 CDRRAQRAARAMA 227 (266)
T ss_pred CCHhhhHHHHHHH
Confidence 7754443433333
No 15
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=86.90 E-value=38 Score=34.44 Aligned_cols=198 Identities=17% Similarity=0.209 Sum_probs=101.6
Q ss_pred hhhHHHHHHHHHHHhhhhhhcccCCH-----HHHHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHHHH
Q 008206 303 TTRKFMTKIIAIASVIDDIYDVYGTL-----EELKLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDK 377 (574)
Q Consensus 303 ~~Rl~laK~~~l~~viDD~fD~ygt~-----eEl~~ft~ai~~~~~~~~rWD~~~~~~lpe~mk~~~~al~~~~~ei~~~ 377 (574)
..|..+.-+-.+.-.+||+-|..... ..|+-+-+++.+ -.. ...|. .++..+|..+..+.
T Consensus 24 ~~R~~~~alYaf~r~~Ddi~D~~~~~~~~~~~~L~~w~~~l~~-------~~~---~~~~~--~pv~~al~~~~~~~--- 88 (265)
T cd00683 24 ELRRAVCALYAFCRAADDIVDDPAAPPDEKLALLDAFRAELDA-------AYW---GGAPT--HPVLRALADLARRY--- 88 (265)
T ss_pred HHHHHHHHHHHHHHHHHhhhhCCCCCchhHHHHHHHHHHHHHH-------HHc---CCCCC--ChHHHHHHHHHHHc---
Confidence 35666666777777899999975432 234444444441 100 01121 35667776666422
Q ss_pred HhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHhhhcchh
Q 008206 378 LVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVP 457 (574)
Q Consensus 378 ~~~g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p 457 (574)
+- -++.+.+++.++..... ....||++|.......+.|....+++-.++.+ . +++....
T Consensus 89 ----~l------~~~~~~~li~g~~~Dl~---~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~~~~-~--~~~~~~~----- 147 (265)
T cd00683 89 ----GI------PREPFRDLLAGMAMDLD---KRRYETLDELDEYCYYVAGVVGLMLLRVFGAS-S--DEAALER----- 147 (265)
T ss_pred ----CC------CHHHHHHHHHHHHHhCC---CCCCCCHHHHHHHHHHhHHHHHHHHHHHhCCC-C--ChHHHHH-----
Confidence 11 12456667777764444 45678999888888888876666555555431 1 2222222
Q ss_pred HHHHHHHHHHHHhcCCcchhhhhhcCCC--CchhhHHHHhcCCCHHHH---------HHHHHHHHHHHHHHHHHhhcCCC
Q 008206 458 KIIRSSSLIARLDDDVHTYKVEQERGDA--PSSVECYVQQYGVSEEEA---------CNKIKGMVEIEWMNINEEIQDPN 526 (574)
Q Consensus 458 ~i~~~~~~i~RL~NDI~S~~~E~~rG~~--~n~V~cyMke~g~S~eeA---------~~~i~~~ie~~wk~ln~e~l~~~ 526 (574)
....+...-|.|=+.......++|-+ +.- -|.++|+|.++- ..-+..+++.+.+-+....-...
T Consensus 148 --A~~lG~AlqltnilRdv~eD~~~gR~YlP~d---~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 222 (265)
T cd00683 148 --ARALGLALQLTNILRDVGEDARRGRIYLPRE---ELARFGVTLEDLLAPENSPAFRALLRRLIARARAHYREALAGLA 222 (265)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHccCCCcCCHH---HHHHcCCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 22222222222222222233345532 332 267789887653 24455556655555544432234
Q ss_pred CCChhHHHHHHHHhh
Q 008206 527 HPPLQWLLPSLNLAR 541 (574)
Q Consensus 527 ~~p~~~~~~~lN~aR 541 (574)
.+|....-.++-++.
T Consensus 223 ~lp~~~~~~~~~~~~ 237 (265)
T cd00683 223 ALPRRSRFCVRAAAM 237 (265)
T ss_pred hCCHhhHHHHHHHHH
Confidence 477554444444443
No 16
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=84.14 E-value=33 Score=34.88 Aligned_cols=120 Identities=15% Similarity=0.057 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHhhhcchhHHHHHHHH
Q 008206 386 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSL 465 (574)
Q Consensus 386 ~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~ 465 (574)
....+.+.+...+.|-..+..|... ..||.++|++....-+|.....+....++-.. .+++.. ....++-+..++
T Consensus 109 ~~~~~~~~~~~~~~GQ~~d~~~~~~-~~~~~~~y~~~~~~KT~~l~~~~~~~~a~l~~-~~~~~~---~~l~~~g~~lG~ 183 (259)
T cd00685 109 ALELFSEAILELVEGQLLDLLSEYD-TDVTEEEYLRIIRLKTAALFAAAPLLGALLAG-ADEEEA---EALKRFGRNLGL 183 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCC-CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC-CCHHHH---HHHHHHHHHHHH
Confidence 5667778888899999989988654 57999999999877666654433322222111 233332 234667788888
Q ss_pred HHHHhcCCcchhhhhh-----------cCCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008206 466 IARLDDDVHTYKVEQE-----------RGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 520 (574)
Q Consensus 466 i~RL~NDI~S~~~E~~-----------rG~~~n~V~cyMke~g~S~eeA~~~i~~~ie~~wk~ln~ 520 (574)
..-+.||+..+....+ .|.. |.+.+|.- .+.+...++++++.+..
T Consensus 184 afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~-T~~~~~~l---------~~~~~~~~~~a~~~l~~ 239 (259)
T cd00685 184 AFQIQDDILDLFGDPETLGKPVGSDLREGKC-TLPVLLAL---------RELAREYEEKALEALKA 239 (259)
T ss_pred HHHHHHHhhcccCChHHHCCCcchHHHcCCc-hHHHHHHH---------HHHHHHHHHHHHHHHHc
Confidence 8889999887754321 2222 44444433 55666777777766654
No 17
>PLN02890 geranyl diphosphate synthase
Probab=83.67 E-value=40 Score=37.18 Aligned_cols=89 Identities=13% Similarity=0.044 Sum_probs=60.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHh-cCCccccHHHHhhhcchhHHHHHH
Q 008206 385 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWAISVPKIIRSS 463 (574)
Q Consensus 385 ~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~-mg~~~l~~e~~e~~~~~p~i~~~~ 463 (574)
..+..+.++...++.|-+.+..|.. ...+|+++|++....-+|.....+...-+ ++. .+++..+. .-++-+..
T Consensus 227 ~~~~~~s~a~~~l~~Gq~ld~~~~~-~~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilag--a~~~~~~~---l~~fG~~l 300 (422)
T PLN02890 227 EVVSLLATAVEHLVTGETMQITSSR-EQRRSMDYYMQKTYYKTASLISNSCKAVAILAG--QTAEVAVL---AFEYGRNL 300 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC--cCHHHHHH---HHHHHHHH
Confidence 4677888999999999999998864 45689999998755544444332221111 122 35555443 35677888
Q ss_pred HHHHHHhcCCcchhhh
Q 008206 464 SLIARLDDDVHTYKVE 479 (574)
Q Consensus 464 ~~i~RL~NDI~S~~~E 479 (574)
++..-+.||+..+.-.
T Consensus 301 GlAFQI~DDiLD~~g~ 316 (422)
T PLN02890 301 GLAFQLIDDVLDFTGT 316 (422)
T ss_pred HHHHHHHHHHHhhcCC
Confidence 8888999999988544
No 18
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=80.14 E-value=74 Score=32.53 Aligned_cols=109 Identities=23% Similarity=0.237 Sum_probs=63.0
Q ss_pred hhhHHHHHHHHHHHhhhhhhccc-CCHHH----HHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHHHH
Q 008206 303 TTRKFMTKIIAIASVIDDIYDVY-GTLEE----LKLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDK 377 (574)
Q Consensus 303 ~~Rl~laK~~~l~~viDD~fD~y-gt~eE----l~~ft~ai~~~~~~~~rWD~~~~~~lpe~mk~~~~al~~~~~ei~~~ 377 (574)
..|..+.-+-.+.=++||+-|.. ++.++ ++.+-+.+.+ .. ..-| -.++..++.+++.+.
T Consensus 18 ~~R~~~~alYAf~R~~Ddi~D~~~~~~~~~~~~L~~wr~~l~~------~~-----~g~~--~~pv~~aL~~~~~~~--- 81 (266)
T TIGR03464 18 RLRAPIHAVYAFARTADDIADEGDGSAEERLALLDDFRAELDA------IY-----SGEP--AAPVFVALARTVQRH--- 81 (266)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHH------Hh-----CCCC--CChHHHHHHHHHHHc---
Confidence 35665566777778899999975 44443 3333333331 10 1112 135667777666543
Q ss_pred HhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhc
Q 008206 378 LVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL 440 (574)
Q Consensus 378 ~~~g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~m 440 (574)
+. - ++.+.+++.++... ......+|++|+......++|.-..+++..+|.
T Consensus 82 ----~l--~----~~~~~~li~~~~~D---l~~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~g~ 131 (266)
T TIGR03464 82 ----GL--P----IEPFLDLLDAFRQD---VVVTRYATWAELLDYCRYSANPVGRLVLDLYGA 131 (266)
T ss_pred ----CC--C----hHHHHHHHHHHHHh---ccCCCCCCHHHHHHHHHHhHHHHHHHHHHHcCC
Confidence 11 1 23455566666422 234457899999999888888777766655543
No 19
>PLN02632 phytoene synthase
Probab=79.83 E-value=89 Score=33.28 Aligned_cols=191 Identities=14% Similarity=0.157 Sum_probs=95.8
Q ss_pred hhHHHHHHHHHHHhhhhhhcccCCH----HHHHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHHHHHh
Q 008206 304 TRKFMTKIIAIASVIDDIYDVYGTL----EELKLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKLV 379 (574)
Q Consensus 304 ~Rl~laK~~~l~~viDD~fD~ygt~----eEl~~ft~ai~~~~~~~~rWD~~~~~~lpe~mk~~~~al~~~~~ei~~~~~ 379 (574)
.|..+.-+-.|.-.+||+=|..... ..|+..-+.+++ ....-|. .++..++.++..+..
T Consensus 74 ~R~ai~alYAf~R~~DdI~D~~~~~~~~~~~L~~w~~~l~~-----------~~~g~~~--~pv~~aL~~~~~~~~---- 136 (334)
T PLN02632 74 RRKAIWAIYVWCRRTDELVDGPNASHITPAALDRWEARLED-----------LFDGRPY--DMLDAALADTVSKFP---- 136 (334)
T ss_pred HHHHHHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHHHHH-----------HhCCCCC--ChHHHHHHHHHHHCC----
Confidence 4555566777778899999965432 233333333331 1111121 245667766665431
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCc-ccc-HHHHhhhcchh
Q 008206 380 NKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDM-AIT-KRALDWAISVP 457 (574)
Q Consensus 380 ~g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~mg~~-~l~-~e~~e~~~~~p 457 (574)
-. ++.+.+++.++.... .....+|++|+......+.|.-..+++..++.... ..+ +++..
T Consensus 137 -----L~----~~~~~~li~g~~~Dl---~~~~~~t~~eL~~Ycy~vAgtVG~l~l~vlg~~~~~~~~~~~~~~------ 198 (334)
T PLN02632 137 -----LD----IQPFRDMIEGMRMDL---VKSRYENFDELYLYCYYVAGTVGLMSVPVMGIAPESKASTESVYN------ 198 (334)
T ss_pred -----CC----hHHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCCccccchHHHHH------
Confidence 11 233566777765333 23467899999999888887776666555544321 011 11111
Q ss_pred HHHHHHHHHHHHhcCCcchhhhhhcCCC--CchhhHHHHhcCCCHHHH---------HHHHHHHHHHHHHHHHHhhcCCC
Q 008206 458 KIIRSSSLIARLDDDVHTYKVEQERGDA--PSSVECYVQQYGVSEEEA---------CNKIKGMVEIEWMNINEEIQDPN 526 (574)
Q Consensus 458 ~i~~~~~~i~RL~NDI~S~~~E~~rG~~--~n~V~cyMke~g~S~eeA---------~~~i~~~ie~~wk~ln~e~l~~~ 526 (574)
.....+...-|.|=+........+|-+ +-- .|.++|+|.++- ..-+..+++.+..-+.+..---.
T Consensus 199 -~A~~lG~AlQltNILRDv~eD~~~GRvYLP~e---~L~~~Gv~~edl~~~~~~~~~~~l~~~~~~~Ar~~~~~a~~~l~ 274 (334)
T PLN02632 199 -AALALGIANQLTNILRDVGEDARRGRVYLPQD---ELAQFGLTDEDIFAGKVTDKWRAFMKFQIKRARMYFAEAEEGVS 274 (334)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhCCceeCCHH---HHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 122223322333322222334456643 221 367899998873 23344555555544443321123
Q ss_pred CCChhHH
Q 008206 527 HPPLQWL 533 (574)
Q Consensus 527 ~~p~~~~ 533 (574)
.+|..+.
T Consensus 275 ~lp~~~r 281 (334)
T PLN02632 275 ELDPASR 281 (334)
T ss_pred hCCHHhH
Confidence 4666544
No 20
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=71.13 E-value=97 Score=32.81 Aligned_cols=88 Identities=9% Similarity=0.051 Sum_probs=56.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHhhhcchhHHHHHHH
Q 008206 385 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSS 464 (574)
Q Consensus 385 ~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~ 464 (574)
.....+.+....++.|-+.+..|.. ...+|.++|++.-..=+|..+..++..-++-.. .+++..+. .-++-+..+
T Consensus 133 ~~~~~~~~~~~~~~~Gq~~~~~~~~-~~~~~~~~y~~~~~~KTa~L~~~~~~~ga~~ag-~~~~~~~~---l~~~G~~lG 207 (322)
T TIGR02749 133 EVVKLISKVITDFAEGEIKQGLNQF-DSDLSLEDYLEKSFYKTASLVAASSKAAAVLSD-VPSQVAND---LYEYGKHLG 207 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc-CCCCCHHHHHHHHHccHHHHHHHHHHHHHHHcC-cCHHHHHH---HHHHHHHHH
Confidence 3566777888889998888877743 335799999997655445443322211111112 34444333 466778888
Q ss_pred HHHHHhcCCcchh
Q 008206 465 LIARLDDDVHTYK 477 (574)
Q Consensus 465 ~i~RL~NDI~S~~ 477 (574)
+..-+.||+..+.
T Consensus 208 ~aFQi~DDild~~ 220 (322)
T TIGR02749 208 LAFQVVDDILDFT 220 (322)
T ss_pred HHHHHHHHhccCC
Confidence 8899999998875
No 21
>CHL00151 preA prenyl transferase; Reviewed
Probab=70.79 E-value=77 Score=33.53 Aligned_cols=87 Identities=11% Similarity=0.053 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHh-cCCccccHHHHhhhcchhHHHHHHH
Q 008206 386 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWAISVPKIIRSSS 464 (574)
Q Consensus 386 ~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~-mg~~~l~~e~~e~~~~~p~i~~~~~ 464 (574)
....+.+....++.+-+.+..|.. ..-+|.++|+.....=+|.....++..-+ ++. .+++..+ ..-++-+..+
T Consensus 135 ~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~---~l~~~G~~lG 208 (323)
T CHL00151 135 VVKLISKVITDFAEGEIRQGLVQF-DTTLSILNYIEKSFYKTASLIAASCKAAALLSD--ADEKDHN---DFYLYGKHLG 208 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCHHHHH---HHHHHHHHHH
Confidence 566778888888888777766643 34579999999744444433322221111 122 3444333 3456778888
Q ss_pred HHHHHhcCCcchhh
Q 008206 465 LIARLDDDVHTYKV 478 (574)
Q Consensus 465 ~i~RL~NDI~S~~~ 478 (574)
+..-+.||+..+.-
T Consensus 209 ~aFQi~DDilD~~~ 222 (323)
T CHL00151 209 LAFQIIDDVLDITS 222 (323)
T ss_pred HHHHHHHHHhhccc
Confidence 88899999998754
No 22
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=69.95 E-value=1.5e+02 Score=31.30 Aligned_cols=109 Identities=17% Similarity=0.154 Sum_probs=70.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHhhhcchhHHHHHHH
Q 008206 385 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSS 464 (574)
Q Consensus 385 ~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~ 464 (574)
.....+.+....++.|-..+..+.... +|.++|+.+-..=+|.....+...-++--. .+++..+. .-.+-+..+
T Consensus 134 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~--~t~e~y~~~i~~KTa~L~~~a~~~ga~la~-~~~~~~~~---l~~~g~~lG 207 (322)
T COG0142 134 EAIKALAEAINGLCGGQALDLAFENKP--VTLEEYLRVIELKTAALFAAAAVLGAILAG-ADEELLEA---LEDYGRNLG 207 (322)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHccCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHhh
Confidence 367778888999999999888886555 999999999666555444433222222111 23444433 366788888
Q ss_pred HHHHHhcCCcchhhhhh-cCCC---------CchhhHHHHhcCCC
Q 008206 465 LIARLDDDVHTYKVEQE-RGDA---------PSSVECYVQQYGVS 499 (574)
Q Consensus 465 ~i~RL~NDI~S~~~E~~-rG~~---------~n~V~cyMke~g~S 499 (574)
+..-+.|||..+.-+.+ -|.. .+...+|.-+.+-.
T Consensus 208 laFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~l~~~~~ 252 (322)
T COG0142 208 LAFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLALEKANE 252 (322)
T ss_pred HHHHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHHHHcCch
Confidence 89999999998876432 2332 36666666554433
No 23
>PLN02857 octaprenyl-diphosphate synthase
Probab=66.51 E-value=67 Score=35.43 Aligned_cols=87 Identities=11% Similarity=0.104 Sum_probs=57.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHh--cCCccccHHHHhhhcchhHHHHH
Q 008206 385 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRS 462 (574)
Q Consensus 385 ~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~ 462 (574)
.....+.+...+++.+-+.+..+.. +.-+|.++|++....=+|..+..+. ..| ++. .+++..+. ..++-+.
T Consensus 227 ~~~~~~s~~~~~l~~Gei~q~~~~~-~~~~s~~~Yl~~i~~KTa~L~~~a~-~~gallag--a~~~~~~~---l~~fG~~ 299 (416)
T PLN02857 227 EVIKLISQVIKDFASGEIKQASSLF-DCDVTLDEYLLKSYYKTASLIAAST-KSAAIFSG--VDSSVKEQ---MYEYGKN 299 (416)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhccc-CCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHcC--CCHHHHHH---HHHHHHH
Confidence 3566777888888888877877754 4457999999976655554433222 222 122 34554433 4667788
Q ss_pred HHHHHHHhcCCcchhh
Q 008206 463 SSLIARLDDDVHTYKV 478 (574)
Q Consensus 463 ~~~i~RL~NDI~S~~~ 478 (574)
.++..-+.||+..+..
T Consensus 300 LGiAFQI~DDiLD~~~ 315 (416)
T PLN02857 300 LGLAFQVVDDILDFTQ 315 (416)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 8888899999998763
No 24
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=56.76 E-value=2.6e+02 Score=29.46 Aligned_cols=87 Identities=7% Similarity=0.016 Sum_probs=57.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhc--CCccccHHHHhhhcchhHHHHH
Q 008206 385 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL--EDMAITKRALDWAISVPKIIRS 462 (574)
Q Consensus 385 ~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~m--g~~~l~~e~~e~~~~~p~i~~~ 462 (574)
.....+.++...++.|-..+..|.. +.-+|.++|++.-..-+|..+..+ ...|. +. .+++..+. .-++-+.
T Consensus 129 ~~~~~~~~~~~~~~~Gq~~~~~~~~-~~~~~~~~Y~~~i~~KTa~L~~~~-~~~ga~~ag--~~~~~~~~---l~~~g~~ 201 (319)
T TIGR02748 129 RAHQILSHTIVEVCRGEIEQIKDKY-NFDQNLRTYLRRIKRKTALLIAAS-CQLGAIASG--ANEAIVKK---LYWFGYY 201 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHcC--CCHHHHHH---HHHHHHH
Confidence 3566778888899999888888743 345799999988666555443322 22221 11 23443322 3566778
Q ss_pred HHHHHHHhcCCcchhh
Q 008206 463 SSLIARLDDDVHTYKV 478 (574)
Q Consensus 463 ~~~i~RL~NDI~S~~~ 478 (574)
.++..-+.||+..+..
T Consensus 202 lG~aFQI~DDilD~~~ 217 (319)
T TIGR02748 202 VGMSYQITDDILDFVG 217 (319)
T ss_pred HHHHHHHHHHHHHccC
Confidence 8888899999987753
No 25
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=52.53 E-value=12 Score=36.78 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=30.7
Q ss_pred HHhcCCcchhhhhhcCC-CCchhhHHHHhcCCCHHHHHHHHHHHH
Q 008206 468 RLDDDVHTYKVEQERGD-APSSVECYVQQYGVSEEEACNKIKGMV 511 (574)
Q Consensus 468 RL~NDI~S~~~E~~rG~-~~n~V~cyMke~g~S~eeA~~~i~~~i 511 (574)
.|--++..+|+..+.-. +.-+=.+.|+++|+|++||+++++++-
T Consensus 129 ~L~~el~~~k~~L~~rK~ierAKglLM~~~g~sE~EAy~~lR~~A 173 (194)
T COG3707 129 ALRRELAKLKDRLEERKVIERAKGLLMKRRGLSEEEAYKLLRRTA 173 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45556666666544332 233444799999999999999999864
No 26
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=50.87 E-value=15 Score=28.43 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=21.6
Q ss_pred CCchhhHHHHhcCCCHHHHHHHHHHHHHH
Q 008206 485 APSSVECYVQQYGVSEEEACNKIKGMVEI 513 (574)
Q Consensus 485 ~~n~V~cyMke~g~S~eeA~~~i~~~ie~ 513 (574)
+.-++.+.|..+|+|+++|.+.+++.-.+
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~Am~ 43 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQAMR 43 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 34567789999999999999999886543
No 27
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=46.97 E-value=16 Score=34.80 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=25.3
Q ss_pred hcCCCCchhhHHHHhc-CCCHHHHHHHHHH
Q 008206 481 ERGDAPSSVECYVQQY-GVSEEEACNKIKG 509 (574)
Q Consensus 481 ~rG~~~n~V~cyMke~-g~S~eeA~~~i~~ 509 (574)
.||-.+..|.||+-++ |.|.++|.+++++
T Consensus 119 GRtRSaTvV~cYLmq~~~wtpe~A~~~vr~ 148 (183)
T KOG1719|consen 119 GRTRSATVVACYLMQHKNWTPEAAVEHVRK 148 (183)
T ss_pred CCccchhhhhhhhhhhcCCCHHHHHHHHHh
Confidence 4666789999998885 9999999999987
No 28
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=35.48 E-value=29 Score=23.43 Aligned_cols=18 Identities=39% Similarity=0.704 Sum_probs=14.7
Q ss_pred HHHHhcCCCHHHHHHHHH
Q 008206 491 CYVQQYGVSEEEACNKIK 508 (574)
Q Consensus 491 cyMke~g~S~eeA~~~i~ 508 (574)
-|.++||+|.||..+.+.
T Consensus 9 rYV~eh~ls~ee~~~RL~ 26 (28)
T PF12368_consen 9 RYVKEHGLSEEEVAERLA 26 (28)
T ss_pred hhHHhcCCCHHHHHHHHH
Confidence 489999999999766654
No 29
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=32.25 E-value=6.3e+02 Score=26.70 Aligned_cols=88 Identities=14% Similarity=0.012 Sum_probs=58.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhc--CCccccHHHHhhhcchhHHHHH
Q 008206 385 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL--EDMAITKRALDWAISVPKIIRS 462 (574)
Q Consensus 385 ~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~m--g~~~l~~e~~e~~~~~p~i~~~ 462 (574)
.....+.++...++.|-..+..|.. +.-+|.++|+.....=+|.....+ ..+|. +. .+++..+ ....+-+.
T Consensus 130 ~~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~s~~~y~~~i~~KTa~lf~~~-~~~ga~lag--~~~~~~~---~l~~~g~~ 202 (323)
T PRK10888 130 KVLEVMSEAVNVIAEGEVLQLMNVN-DPDITEENYMRVIYSKTARLFEAA-AQCSGILAG--CTPEQEK---GLQDYGRY 202 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHcC--CCHHHHH---HHHHHHHH
Confidence 3566778888889998888887754 345899999998766555553322 22221 11 2444332 23567788
Q ss_pred HHHHHHHhcCCcchhhh
Q 008206 463 SSLIARLDDDVHTYKVE 479 (574)
Q Consensus 463 ~~~i~RL~NDI~S~~~E 479 (574)
.++..-+.||+..+...
T Consensus 203 lG~aFQi~DD~ld~~~~ 219 (323)
T PRK10888 203 LGTAFQLIDDLLDYSAD 219 (323)
T ss_pred HHHHHHHHHHhhcccCC
Confidence 88888999999888543
No 30
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=27.87 E-value=73 Score=32.82 Aligned_cols=64 Identities=27% Similarity=0.341 Sum_probs=49.8
Q ss_pred chhhhhhcCCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHH----------HHhhcCCCCCChhHHHHHHHHhh
Q 008206 475 TYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNI----------NEEIQDPNHPPLQWLLPSLNLAR 541 (574)
Q Consensus 475 S~~~E~~rG~~~n~V~cyMke~g~S~eeA~~~i~~~ie~~wk~l----------n~e~l~~~~~p~~~~~~~lN~aR 541 (574)
.|++||. .++.++..+...|.+.++|.++++--+++.+-++ +.++|.+.++|..++..+.++||
T Consensus 96 ~wk~~qk---a~klle~aaekl~~~~ee~~~~vg~~L~e~fG~~y~aFE~aa~~g~~~l~~~~~~~~~~~~l~e~a~ 169 (269)
T COG1093 96 EWKKEQK---ADKLLELAAEKLGKDLEEAYEEVGWKLEEEFGSLYDAFEAAAKEGGEVLDDEGVPEEWKEVLKEIAR 169 (269)
T ss_pred HHHHHHH---HHHHHHHHHHHhCCCHHHHHHHHhHHHHHHhCCHHHHHHHHHhcCCcccccCCCCHHHHHHHHHHHH
Confidence 4566665 3688888888899999999999988887766433 33455556789999999999998
No 31
>smart00400 ZnF_CHCC zinc finger.
Probab=27.85 E-value=65 Score=24.65 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=21.1
Q ss_pred CCCCchhhHHHHhcCCCHHHHHHHH
Q 008206 483 GDAPSSVECYVQQYGVSEEEACNKI 507 (574)
Q Consensus 483 G~~~n~V~cyMke~g~S~eeA~~~i 507 (574)
|.-.++|..+|+-+|+|-.||++.+
T Consensus 30 g~gGd~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 30 GAGGNVISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred CCCCCHHHHHHHHHCcCHHHHHHHh
Confidence 4445889999999999999999876
No 32
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=26.69 E-value=76 Score=30.22 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=24.5
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChh
Q 008206 492 YVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQ 531 (574)
Q Consensus 492 yMke~g~S~eeA~~~i~~~ie~~wk~ln~e~l~~~~~p~~ 531 (574)
-|++.|.|..+ |+..|++.||+ .+.+||+-|+|
T Consensus 126 ~~~~~Gks~~e----IR~~ID~kYk~---g~~~pTpTp~P 158 (158)
T PF13798_consen 126 QMYQEGKSPKE----IRQYIDEKYKE---GYAKPTPTPMP 158 (158)
T ss_pred HHHHcCCCHHH----HHHHHHHHHHh---CCCCCCCCCCC
Confidence 46677877555 89999999974 57778777765
No 33
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=25.87 E-value=1.5e+02 Score=26.74 Aligned_cols=84 Identities=24% Similarity=0.235 Sum_probs=46.5
Q ss_pred HHHHHHHHHhCcccCcHHHHHHHHHHHHhhc---CCCCCCCCCCCCCchHHHHHHHHHHHhcCceechhhhccccccccc
Q 008206 77 VAIVNQLQRLGVAYHFENEIKEALQTIYDSH---VNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGE 153 (574)
Q Consensus 77 l~lID~lqrLGi~~hF~~EI~~~L~~i~~~~---~~~~~~~~~~~~~Dl~~~al~FRlLR~hGy~vS~dvf~~F~d~~g~ 153 (574)
-.+|+.|++|||++--.. .|-.+-+.- ...|+... +--=-.+|++-|.||.+| +|.--.-++ + .+|.
T Consensus 14 ~~~ie~L~~lgi~R~vA~----tlv~L~~~~E~sS~~IE~~s---gLRQPEVSiAMr~Lre~g-WV~~R~eKK-k-GKGR 83 (124)
T COG4738 14 YEIIELLRILGIPRNVAT----TLVCLAKGDEASSREIERVS---GLRQPEVSIAMRYLRENG-WVDEREEKK-K-GKGR 83 (124)
T ss_pred HHHHHHHHHcCCCchHHH----HHHHHhcCcchhhhhhHHhh---cCCCchhHHHHHHHHHcc-ccchHHhcc-c-CCCC
Confidence 468999999999986432 222221110 00110000 112347899999999999 666655555 4 3343
Q ss_pred c-cc-ccccChHHHHhHhh
Q 008206 154 F-KA-MLTNDAKGLLCLYE 170 (574)
Q Consensus 154 F-~~-~~~~dv~glL~LYe 170 (574)
= |. .|+.+...+++-++
T Consensus 84 Pik~Y~Lt~~~~eIvs~ie 102 (124)
T COG4738 84 PIKLYRLTVPFDEIVSEIE 102 (124)
T ss_pred CceEEEecCcHHHHHHHHH
Confidence 2 21 34566666665554
No 34
>smart00463 SMR Small MutS-related domain.
Probab=24.67 E-value=87 Score=25.64 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=20.9
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHH
Q 008206 496 YGVSEEEACNKIKGMVEIEWMNI 518 (574)
Q Consensus 496 ~g~S~eeA~~~i~~~ie~~wk~l 518 (574)
||++.++|+..+...++++++.-
T Consensus 7 HG~~~~eA~~~l~~~l~~~~~~~ 29 (80)
T smart00463 7 HGLTVEEALTALDKFLNNARLKG 29 (80)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcC
Confidence 79999999999999999988764
No 35
>PRK10581 geranyltranstransferase; Provisional
Probab=24.15 E-value=5.4e+02 Score=26.93 Aligned_cols=111 Identities=13% Similarity=0.135 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHhhhc-cccchhhHHHHHHHh--cCCccccHHHHhhhcchhHHHHHHHHHHHHhc
Q 008206 395 KGLVKAYFVEAKWFHAKYVPTFEECVENST-MSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDD 471 (574)
Q Consensus 395 ~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~-~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~N 471 (574)
..++.|-..+..|.. ..+|.++|++.-. .|+.+ ...+ ...| ++.. -+++..+. ..++-+..++..-+.|
T Consensus 152 ~~l~~GQ~ld~~~~~--~~~~~~~y~~i~~~KTa~L-~~~~-~~~gailag~-~~~~~~~~---l~~~g~~lG~aFQI~D 223 (299)
T PRK10581 152 AGMCGGQALDLEAEG--KQVPLDALERIHRHKTGAL-IRAA-VRLGALSAGD-KGRRALPV---LDRYAESIGLAFQVQD 223 (299)
T ss_pred chhhHhhHHHHhccC--CCCCHHHHHHHHHHhhHHH-HHHH-HHHHHHHcCC-CcHHHHHH---HHHHHHHHHHHHHHHH
Confidence 346677777777743 4689999998755 45544 3222 2222 1221 12233332 3567788888889999
Q ss_pred CCcchhhhh-----------hcCCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008206 472 DVHTYKVEQ-----------ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 520 (574)
Q Consensus 472 DI~S~~~E~-----------~rG~~~n~V~cyMke~g~S~eeA~~~i~~~ie~~wk~ln~ 520 (574)
|+..+.... ..|.. +.+.++ ..+.|.+.+.+.++.+.+.+..
T Consensus 224 DilD~~g~~~~~GK~~g~Dl~~gk~-T~p~l~------~~e~a~~~a~~~~~~A~~~l~~ 276 (299)
T PRK10581 224 DILDVVGDTATLGKRQGADQQLGKS-TYPALL------GLEQARKKARDLIDDARQSLDQ 276 (299)
T ss_pred HHccccCChHHHCCCcchhhhcCCC-CHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 999874331 12222 444433 2478888899999988877664
No 36
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=23.61 E-value=7.7e+02 Score=24.86 Aligned_cols=79 Identities=16% Similarity=0.149 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHH-hhcCCCCChHHHHhhhccccchhhHHHHHHHh-cCCccccHHHHhhhcchhHHHHHHHHHHHHhcCC
Q 008206 396 GLVKAYFVEAKW-FHAKYVPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWAISVPKIIRSSSLIARLDDDV 473 (574)
Q Consensus 396 ~~~~a~l~EAkW-~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~-mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI 473 (574)
..+++..-|... ...+..+|.++|++.-..-+|......+..-+ ++. .+++..+ ...++-+..++..-+.||+
T Consensus 114 ~~~~~~~~q~~d~~~~~~~~~~~~y~~i~~~KTg~l~~~~~~~ga~lag--~~~~~~~---~l~~~g~~lG~afQi~DD~ 188 (260)
T PF00348_consen 114 ALIEGEIGQALDLANEDKDPTEEEYLEIIRLKTGSLFALACQLGAILAG--ADEEQIE---ALREFGRHLGIAFQIRDDL 188 (260)
T ss_dssp HHHHHHHHHHHHHHTTTSSTSHHHHHHHHHHHTHHHHHHHHHHHHHHTT--SGHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hcccceeehhhccccccccccHHHHHHHHhhcchHHHHHHHHHHHHhcc--chhHHHH---HHHHHHHHHHHHHhhhhhh
Confidence 344444434322 22334889999999987777665433322221 122 3444333 3467788888888999999
Q ss_pred cchhhh
Q 008206 474 HTYKVE 479 (574)
Q Consensus 474 ~S~~~E 479 (574)
..+...
T Consensus 189 ~d~~~~ 194 (260)
T PF00348_consen 189 LDLFGD 194 (260)
T ss_dssp HHHHSH
T ss_pred hhccCc
Confidence 888754
No 37
>KOG3951 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.60 E-value=1.1e+02 Score=31.55 Aligned_cols=56 Identities=27% Similarity=0.339 Sum_probs=40.3
Q ss_pred ccccccccccccChHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHc
Q 008206 149 DEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSL 212 (574)
Q Consensus 149 d~~g~F~~~~~~dv~glL~LYeAs~l~~~gE~iLdea~~ft~~~L~~~~~~~~~~l~~~V~~aL 212 (574)
+.+|-|.....-|+||-..|-++-- .... +-|=.|+.||++||. +.+-+++|++-|
T Consensus 264 hp~GAFv~~s~iDmkgcvrllk~q~-p~~~-e~LLnaLRfTTKHlN------desTpK~ir~ll 319 (321)
T KOG3951|consen 264 HPNGAFVSNSSIDMKGCVRLLKLQP-PEQS-ECLLNALRFTTKHLN------DESTPKSIRHLL 319 (321)
T ss_pred cccccccccCcCcHHHHHHHHHcCC-chhh-HHHHHHHHHHHhhcC------CCCChHHHHHHh
Confidence 4678888888899999999988743 2222 357789999999984 334456666655
No 38
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=21.85 E-value=1e+02 Score=25.38 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=20.8
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHH
Q 008206 496 YGVSEEEACNKIKGMVEIEWMNINE 520 (574)
Q Consensus 496 ~g~S~eeA~~~i~~~ie~~wk~ln~ 520 (574)
||++.+||+..+...+.++++.-..
T Consensus 4 HG~~~~eA~~~l~~~l~~~~~~~~~ 28 (83)
T PF01713_consen 4 HGLTVEEALRALEEFLDEARQRGIR 28 (83)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHTTHS
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 7999999999999999999865443
No 39
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=21.03 E-value=6.1e+02 Score=24.87 Aligned_cols=102 Identities=25% Similarity=0.281 Sum_probs=64.1
Q ss_pred HHHHHHhc-cccCccCHHHHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhcCCCCCCCCCCCCCchHHHHHHHHHHHhcC
Q 008206 58 EIEKLLVS-NNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHG 136 (574)
Q Consensus 58 ~vr~~l~~-~~~~~~d~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~~~~~Dl~~~al~FRlLR~hG 136 (574)
-||-|+.. ..+|.-|--|+=.+.+.|+.+|++. |-+..|+.-.+.
T Consensus 82 llrAMIaAAkADG~ID~~Er~~I~~~l~~~g~d~----e~~~~l~~eL~~------------------------------ 127 (188)
T PF04391_consen 82 LLRAMIAAAKADGHIDEEERQRIEGALQELGLDA----EERAWLQAELAA------------------------------ 127 (188)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCH----HHHHHHHHHHhC------------------------------
Confidence 47788872 2334446778999999999999883 444444333221
Q ss_pred ceechhhhccccccccccccccccChHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHHHhh--cCCCchHHHHHHH
Q 008206 137 YKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLS--HLSTPLVDQVEHS 211 (574)
Q Consensus 137 y~vS~dvf~~F~d~~g~F~~~~~~dv~glL~LYeAs~l~~~gE~iLdea~~ft~~~L~~~~~--~~~~~l~~~V~~a 211 (574)
.++++.+-.- .+|..-=.++|-||.+.+..+.-.+ +.||..+.. .+++.+..+++..
T Consensus 128 -P~d~~~la~~-----------v~~~e~A~evY~aS~laid~d~~~E------r~YL~~LA~aL~L~~~lv~~le~~ 186 (188)
T PF04391_consen 128 -PLDPDALAAA-----------VTDPEQAAEVYLASLLAIDVDTFAE------RAYLDELAQALGLDPDLVAQLEQQ 186 (188)
T ss_pred -CCCHHHHHHh-----------CCCHHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHhCcCHHHHHHHHHH
Confidence 3344333221 1334445689999999887654443 567888776 5677788887764
No 40
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=20.04 E-value=98 Score=28.24 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=18.6
Q ss_pred hhhHHHHhcCCCHHHHHHHHHH
Q 008206 488 SVECYVQQYGVSEEEACNKIKG 509 (574)
Q Consensus 488 ~V~cyMke~g~S~eeA~~~i~~ 509 (574)
=|.+.|.|.|+|.++|++.+..
T Consensus 87 DIkLV~eQa~VsreeA~kAL~e 108 (122)
T COG1308 87 DIKLVMEQAGVSREEAIKALEE 108 (122)
T ss_pred HHHHHHHHhCCCHHHHHHHHHH
Confidence 3778999999999999987654
No 41
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=20.04 E-value=88 Score=31.33 Aligned_cols=27 Identities=26% Similarity=0.589 Sum_probs=22.0
Q ss_pred CCCCchhhHHH-HhcCCCHHHHHHHHHH
Q 008206 483 GDAPSSVECYV-QQYGVSEEEACNKIKG 509 (574)
Q Consensus 483 G~~~n~V~cyM-ke~g~S~eeA~~~i~~ 509 (574)
|-....|.||| +++|+|..||++.++.
T Consensus 159 GRTG~liAc~lmy~~g~ta~eaI~~lR~ 186 (225)
T KOG1720|consen 159 GRTGTLIACYLMYEYGMTAGEAIAWLRI 186 (225)
T ss_pred CchhHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 45567888986 5689999999998875
Done!