Query 008206
Match_columns 574
No_of_seqs 233 out of 904
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 20:41:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008206.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008206hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 6E-167 2E-171 1369.6 53.9 537 14-574 16-554 (554)
2 3m00_A Aristolochene synthase; 100.0 5E-166 2E-170 1361.8 53.4 534 16-574 13-550 (550)
3 3n0f_A Isoprene synthase; terp 100.0 7E-165 3E-169 1354.9 48.6 537 18-573 13-551 (555)
4 2ong_A 4S-limonene synthase; m 100.0 1E-160 4E-165 1328.2 53.4 539 19-573 1-543 (543)
5 1n1b_A (+)-bornyl diphosphate 100.0 4E-160 1E-164 1323.1 47.6 538 18-573 4-549 (549)
6 2j5c_A 1,8-cineole synthase; t 100.0 3E-159 1E-163 1319.7 43.7 534 16-573 31-569 (569)
7 3sdr_A Alpha-bisabolene syntha 100.0 3E-143 1E-147 1228.5 45.9 492 72-574 297-817 (817)
8 3p5p_A Taxadiene synthase; cla 100.0 9E-143 3E-147 1217.1 49.5 490 72-574 245-756 (764)
9 3s9v_A Abietadiene synthase, c 100.0 1E-142 4E-147 1219.6 47.9 490 72-573 269-785 (785)
10 3pya_A ENT-copalyl diphosphate 100.0 4E-107 1E-111 915.8 37.6 454 49-573 220-720 (727)
11 1ps1_A Pentalenene synthase; a 100.0 1.2E-50 4E-55 423.8 19.8 251 255-522 15-270 (337)
12 1di1_A Aristolochene synthase; 100.0 1.2E-48 4E-53 401.8 20.8 242 257-522 13-264 (300)
13 3bny_A Aristolochene synthase; 100.0 3.5E-47 1.2E-51 394.8 21.2 245 254-522 24-278 (320)
14 3kb9_A EPI-isozizaene synthase 100.0 6.6E-46 2.3E-50 395.6 21.0 242 265-521 66-311 (382)
15 3v1v_A 2-MIB synthase, 2-methy 100.0 3.5E-33 1.2E-37 301.1 17.1 246 261-522 130-390 (433)
16 1yyq_A Trichodiene synthase; t 99.7 6.4E-18 2.2E-22 178.8 14.6 226 264-521 34-276 (374)
17 3sdr_A Alpha-bisabolene syntha 97.2 9.4E-05 3.2E-09 85.2 2.2 52 12-64 17-68 (817)
18 3acx_A Dehydrosqualene synthas 90.5 12 0.00041 37.4 17.7 194 303-533 38-244 (293)
19 4hd1_A Squalene synthase HPNC; 85.2 32 0.0011 34.3 19.0 187 304-533 40-239 (294)
20 3lmd_A Geranylgeranyl pyrophos 79.1 12 0.00042 38.8 11.4 85 386-478 161-247 (360)
21 3ipi_A Geranyltranstransferase 77.1 14 0.00049 37.1 10.9 142 386-543 128-279 (295)
22 3mzv_A Decaprenyl diphosphate 69.1 93 0.0032 31.7 15.0 87 385-478 139-227 (341)
23 3oyr_A Trans-isoprenyl diphosp 68.6 66 0.0022 33.0 13.7 87 385-478 151-239 (345)
24 3rmg_A Octaprenyl-diphosphate 68.0 42 0.0014 34.2 12.0 87 385-478 133-221 (334)
25 2ftz_A Geranyltranstransferase 68.0 49 0.0017 33.0 12.2 120 386-520 135-264 (284)
26 1rtr_A Geranyltranstransferase 67.6 25 0.00084 35.5 10.0 111 395-520 148-271 (301)
27 3ts7_A Geranyltranstransferase 65.9 43 0.0015 34.1 11.5 111 395-519 158-281 (324)
28 3m0g_A Farnesyl diphosphate sy 64.9 21 0.00073 35.9 8.9 111 395-520 147-269 (297)
29 3p8l_A Geranyltranstransferase 62.4 39 0.0013 34.1 10.3 110 395-520 156-279 (302)
30 3p8r_A Geranyltranstransferase 62.0 30 0.001 34.8 9.5 111 395-520 158-282 (302)
31 1wy0_A Geranylgeranyl pyrophos 60.8 57 0.002 33.2 11.5 86 386-478 138-225 (342)
32 2h8o_A Geranyltranstransferase 57.6 42 0.0014 34.3 9.7 111 395-520 192-315 (335)
33 4f62_A Geranyltranstransferase 55.9 46 0.0016 33.8 9.6 111 396-520 152-275 (317)
34 3pko_A Geranylgeranyl pyrophos 55.9 1.1E+02 0.0038 31.1 12.6 103 385-495 143-258 (334)
35 3lsn_A Geranyltranstransferase 54.4 47 0.0016 33.4 9.4 123 397-541 154-289 (304)
36 4dhd_A Polyprenyl synthetase; 51.8 67 0.0023 33.0 10.2 87 386-478 133-232 (358)
37 3apz_A Geranyl diphosphate syn 49.7 88 0.003 31.9 10.7 88 385-479 153-242 (348)
38 1rqj_A Geranyltranstransferase 48.9 93 0.0032 31.1 10.5 112 395-520 152-276 (299)
39 1pd3_A Nonstructural protein N 47.5 15 0.0005 27.3 3.0 33 50-86 16-48 (58)
40 3uca_A Geranyltranstransferase 45.7 87 0.003 31.8 9.8 111 395-520 180-304 (324)
41 3pde_A Farnesyl-diphosphate sy 44.6 81 0.0028 31.8 9.3 108 396-519 156-277 (309)
42 3npk_A Geranyltranstransferase 42.3 1.5E+02 0.0052 29.5 10.8 112 394-519 144-265 (291)
43 3llw_A Geranyltranstransferase 42.3 64 0.0022 32.6 8.1 112 394-519 158-280 (311)
44 3lom_A Geranyltranstransferase 41.5 1.4E+02 0.0048 30.0 10.6 112 395-519 158-282 (313)
45 3nf2_A Putative polyprenyl syn 40.8 1.3E+02 0.0045 30.7 10.4 85 386-477 144-230 (352)
46 2j1p_A Geranylgeranyl pyrophos 39.3 42 0.0014 33.6 6.1 108 396-520 161-272 (293)
47 1wmw_A Geranylgeranyl diphosph 39.2 1.1E+02 0.0039 30.8 9.5 84 386-477 131-218 (330)
48 3vj8_A Squalene synthase; farn 38.7 3.3E+02 0.011 27.6 17.2 225 304-554 38-284 (343)
49 3s9v_A Abietadiene synthase, c 31.6 17 0.00058 41.6 1.9 42 23-64 4-45 (785)
50 1uby_A FPS, farnesyl diphospha 29.5 2.7E+02 0.0092 28.5 10.6 88 386-478 170-264 (367)
51 2e8v_A Geranylgeranyl pyrophos 27.8 98 0.0034 31.5 6.8 87 386-478 132-221 (340)
52 2q80_A Geranylgeranyl pyrophos 26.6 2.3E+02 0.008 28.1 9.2 85 385-478 111-196 (301)
53 3kra_B Geranyl diphosphate syn 25.4 74 0.0025 31.4 5.2 93 396-519 150-244 (274)
54 1nh1_A Avirulence B protein; h 25.0 79 0.0027 31.4 5.0 72 344-427 46-121 (330)
55 3aqb_B Component B of hexapren 25.0 1.5E+02 0.0052 29.8 7.6 87 385-478 130-218 (325)
56 2azj_A Geranylgeranyl pyrophos 23.2 2.8E+02 0.0097 27.4 9.0 133 386-541 136-274 (289)
57 3tc1_A Octaprenyl pyrophosphat 23.1 3.7E+02 0.013 26.9 10.0 84 385-478 122-207 (315)
58 1c07_A Protein (epidermal grow 22.3 2.5E+02 0.0086 22.1 7.1 61 72-142 25-86 (95)
59 2ee7_A Sperm flagellar protein 20.4 88 0.003 27.4 4.0 67 256-323 11-85 (127)
60 3fau_A NEDD4-binding protein 2 20.3 78 0.0027 25.0 3.4 23 496-518 6-28 (82)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=6.4e-167 Score=1369.56 Aligned_cols=537 Identities=48% Similarity=0.868 Sum_probs=498.1
Q ss_pred ccccccCCCCCCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHHHHHhc-cccCccCHHHHHHHHHHHHHhCcccCc
Q 008206 14 TKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVS-NNTAWKTLEEIVAIVNQLQRLGVAYHF 92 (574)
Q Consensus 14 ~~~~~~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~~lk~~vr~~l~~-~~~~~~d~~~~l~lID~lqrLGi~~hF 92 (574)
++.++.||++|||||+|||+||++ ++ ++..+.+.+|+++||+|||+||.+ .+ |++++|++||+||||||+|||
T Consensus 16 ~~~~~~R~~~~~~ps~W~~~fl~~-~~-~~~~~~~~~~~e~Lk~eVr~~l~~~~~----~~~~~l~lID~lqrLGi~~hF 89 (554)
T 3g4d_A 16 SNKDEMRPKADFQPSIWGDLFLNC-PD-KNIDAETEKRHQQLKEEVRKMIVAPMA----NSTQKLAFIDSVQRLGVSYHF 89 (554)
T ss_dssp ---------CCCCCCTTTTTTTSC-CC----CHHHHHHHHHHHHHHHHHHHSCCS----SHHHHHHHHHHHHHTTCGGGC
T ss_pred ccCCCCCCCCCCCccccccccccC-CC-chhhHHHHHHHHHHHHHHHHHHHhccc----CHHHHHHHHHHHHHcCchhhh
Confidence 335568999999999999999997 43 344577899999999999999985 46 899999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCchHHHHHHHHHHHhcCceechhhhccccccccccccccccChHHHHhHhhhc
Q 008206 93 ENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEAS 172 (574)
Q Consensus 93 ~~EI~~~L~~i~~~~~~~~~~~~~~~~~Dl~~~al~FRlLR~hGy~vS~dvf~~F~d~~g~F~~~~~~dv~glL~LYeAs 172 (574)
++||+++|++||++ + ... ..||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||
T Consensus 90 ~~EI~~~L~~i~~~---~--~~~---~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs 161 (554)
T 3g4d_A 90 TKEIEDELENIYHN---N--NDA---ENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQAS 161 (554)
T ss_dssp HHHHHHHHHHHHHS---C--CCT---TCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc---c--CCC---CCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHH
Confidence 99999999999985 1 111 479999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHccCCccCCcchHHHhhhHHhhhcCCccccHHHHHHHhhchH
Q 008206 173 YLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFN 252 (574)
Q Consensus 173 ~l~~~gE~iLdea~~ft~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~~n~~lLelAkldFn 252 (574)
|+++|||+|||||++||++||++.+.+++++|+++|+|||++|||+++||||||+||++|+++ +++|++||||||||||
T Consensus 162 ~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~-~~~n~~lLelAkldFn 240 (554)
T 3g4d_A 162 YLRVHGEDILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDI-ESHNKALLEFAKIDFN 240 (554)
T ss_dssp TTCCTTCHHHHHHHHHHHHHHHHHSTTCCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSS-TTCCHHHHHHHHHHHH
T ss_pred hCCCCCcHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcC-ccccHHHHHHHHHHHH
Confidence 999999999999999999999999888888999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHhHhcCcCCChhhhhhHhhhhhhhhccccCCCcchhhHHHHHHHHHHHhhhhhhcccCCHHHHH
Q 008206 253 LLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELK 332 (574)
Q Consensus 253 ~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~ 332 (574)
+||++||+||++++|||+++||.+++||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+|||+
T Consensus 241 ~~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~ 320 (554)
T 3g4d_A 241 MLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELI 320 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhcC
Q 008206 333 LFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAK 411 (574)
Q Consensus 333 ~ft~ai~~~~~~~~rWD~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~-g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~g 411 (574)
.||+||+ |||++++++||+|||+||.+|+++++|+++++.+ |+. ++++|++++|+++++||++||+|+++|
T Consensus 321 ~ft~ai~-------RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~-~~~~ylk~~w~~l~~ayl~EAkW~~~g 392 (554)
T 3g4d_A 321 PYTNAIE-------RWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQ-YRVEYAKNAMIRLAQSYLVEAKWTLQN 392 (554)
T ss_dssp HHHHHHH-------HCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCT-HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHH-------hcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999 9999999999999999999999999999999988 876 799999999999999999999999999
Q ss_pred CCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHhhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchhhH
Q 008206 412 YVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVEC 491 (574)
Q Consensus 412 ~vPT~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V~c 491 (574)
|+||+||||+||++|+|++++++++++|||+. +|+++++|+.++|+|+++++.|+||+|||+||++|++||+++|+|+|
T Consensus 393 yvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~-lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~c 471 (554)
T 3g4d_A 393 YKPSFEEFKANALPTCGYAMLAITSFVGMGDI-VTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIEC 471 (554)
T ss_dssp CCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTT-SCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHH
T ss_pred CCCCHHHHHhccceeehHHHHHHHHHHhcCCC-CCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHH
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhccccccCCCCCCCChhHHHHHHhhhccc
Q 008206 492 YVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDP 571 (574)
Q Consensus 492 yMke~g~S~eeA~~~i~~~ie~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~Y~~~Dgyt~~~~~~k~~i~~ll~~p 571 (574)
||+|+|+|+|||+++++++|+++||+||++|++++++|++|+++++|+||++++||+++||||.|+..||++|++||++|
T Consensus 472 YMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~P 551 (554)
T 3g4d_A 472 YMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEP 551 (554)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCC
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999988999999999999999999999999999999778999999999999
Q ss_pred CCC
Q 008206 572 LPM 574 (574)
Q Consensus 572 i~~ 574 (574)
||+
T Consensus 552 i~l 554 (554)
T 3g4d_A 552 IAL 554 (554)
T ss_dssp CCC
T ss_pred CCC
Confidence 986
No 2
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=4.6e-166 Score=1361.78 Aligned_cols=534 Identities=43% Similarity=0.824 Sum_probs=508.6
Q ss_pred ccccCCCCCCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHHHHHhc-cccCccCHHHHHHHHHHHHHhCcccCcHH
Q 008206 16 ADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVS-NNTAWKTLEEIVAIVNQLQRLGVAYHFEN 94 (574)
Q Consensus 16 ~~~~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~~lk~~vr~~l~~-~~~~~~d~~~~l~lID~lqrLGi~~hF~~ 94 (574)
.++.||++|||||+|||+||++.++ ++..+.+.+|+++||+|||+||.+ .+ |++++|++||+||||||+|||++
T Consensus 13 ~~~~R~~~~~~ps~W~d~fl~~~~~-~~~~~~~~~~~e~Lk~eVr~~l~~~~~----~~~~~L~lID~lqrLGi~~hF~~ 87 (550)
T 3m00_A 13 EEIVRPVADFSPSLWGDQFLSFSIK-NQVAEKYAKEIEALKEQTRNMLLATGM----KLADTLNLIDTIERLGISYHFEK 87 (550)
T ss_dssp ---CCCCCCCCCCTTTTTTSCCCCC-HHHHHHHHHHHHHHHHHHHHHHTCSSC----CHHHHHHHHHHHHHTTCGGGCHH
T ss_pred cccCCCCCCCCcccccccccccCCc-chhhHHHHHHHHHHHHHHHHHHHhccc----CHHHHHHHHHHHHHcCchhhhHH
Confidence 3458999999999999999997543 344567899999999999999975 46 89999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCchHHHHHHHHHHHhcCceechhhhccccccccccccccccChHHHHhHhhhccC
Q 008206 95 EIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYL 174 (574)
Q Consensus 95 EI~~~L~~i~~~~~~~~~~~~~~~~~Dl~~~al~FRlLR~hGy~vS~dvf~~F~d~~g~F~~~~~~dv~glL~LYeAs~l 174 (574)
||+++|++||++|. . ..||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||||||||+
T Consensus 88 EI~~~L~~i~~~~~------~---~~dl~~~al~FRLLR~hGy~VS~dvf~~F~~~~G~F~~~l~~d~~glL~LYeAs~l 158 (550)
T 3m00_A 88 EIDDILDQIYNQNS------N---CNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHV 158 (550)
T ss_dssp HHHHHHHHHHHHCC------C---CSSHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcc------c---CCCHHHHHHHHHHHHhcCCCCChHHhhhccccCCCccccchhchHHHHHHHHHHhc
Confidence 99999999999861 1 36999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHccCCccCCcchHHHhhhHH-hhhcCCccccHHHHHHHhhchHH
Q 008206 175 RVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDFNL 253 (574)
Q Consensus 175 ~~~gE~iLdea~~ft~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~-~Y~~~~~~~n~~lLelAkldFn~ 253 (574)
++|||+|||||++||++||++.+.+++++|+++|+|||++|||+++||||||+||+ +|+++ +++|++||||||||||+
T Consensus 159 ~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~~Y~~~-~~~n~~lLelAkldFn~ 237 (550)
T 3m00_A 159 RTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKE-QSKNNVLLRFAKLDFNL 237 (550)
T ss_dssp CCTTCGGGTTHHHHHHHHHHHHGGGCCTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTGGGC-TTCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHhCCCccCCchHHHHHHHHHHHhccc-ccccHHHHHHHHHHHHH
Confidence 99999999999999999999998888889999999999999999999999999999 99999 99999999999999999
Q ss_pred HHHhhHHHHHHHHHHHhHhcCcCCChhhhhhHhhhhhhhhccccCCCcchhhHHHHHHHHHHHhhhhhhcccCCHHHHHH
Q 008206 254 LQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKL 333 (574)
Q Consensus 254 ~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ 333 (574)
||++||+||++++|||+++||.+++||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+|||+.
T Consensus 238 ~Q~~hq~EL~~l~rWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ 317 (550)
T 3m00_A 238 LQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEA 317 (550)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHSTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCccccCcHHHhHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHccccCCHHHHHH
Confidence 99999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 008206 334 FTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKY 412 (574)
Q Consensus 334 ft~ai~~~~~~~~rWD~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~-g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~g~ 412 (574)
||+||+ |||++++++||+|||+||.+|+++++|+++++.+ |+. ++++|++++|+++++||++||+|+++||
T Consensus 318 ft~ai~-------RWD~~~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~-~~~~ylk~~w~~l~~ayl~EAkW~~~gy 389 (550)
T 3m00_A 318 YTDAIQ-------RWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRS-HIVCHAIERMKEIVRNYNVESTWFIEGY 389 (550)
T ss_dssp HHHHHH-------HCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCG-GGHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHH-------hcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999 9999999999999999999999999999999888 776 7999999999999999999999999999
Q ss_pred CCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHhhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchhhHH
Q 008206 413 VPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECY 492 (574)
Q Consensus 413 vPT~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V~cy 492 (574)
+||+||||+||++|+|++++++++++|| +. +|+++++|+.++|+|+++++.|+||+|||+||++|++||+++|+|+||
T Consensus 390 vPT~EEYl~na~vSsg~~~l~~~~f~g~-~~-lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~vas~V~cY 467 (550)
T 3m00_A 390 TPPVSEYLSNALATTTYYLLATTSYLGM-KS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECC 467 (550)
T ss_dssp CCCHHHHHHHHTGGGSHHHHHHHHHHTC-TT-CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHHHHTTCTTSHHHHH
T ss_pred CCCHHHHHHhccccchHHHHHHHHHHcC-CC-CcHHHHHhhcccHHHHHHHhhhheeeccchhHHHHHhcCCcccHHHHH
Confidence 9999999999999999999999999988 66 999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhccccccC-CCCCCCChhHHHHHHhhhccc
Q 008206 493 VQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNG-DGYTNSTGKTKDRIASLLVDP 571 (574)
Q Consensus 493 Mke~g~S~eeA~~~i~~~ie~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~Y~~~-Dgyt~~~~~~k~~i~~ll~~p 571 (574)
|+|+|+|+|+|+++++++|+++||+||++|++++++|++|+++++|+||++++||+++ ||||.|+..||++|++||++|
T Consensus 468 Mke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~P 547 (550)
T 3m00_A 468 MRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDS 547 (550)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTSCC-----CCHHHHHHHHHHHHTCC
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999988999999999999999999999998 999999778999999999999
Q ss_pred CCC
Q 008206 572 LPM 574 (574)
Q Consensus 572 i~~ 574 (574)
||+
T Consensus 548 i~~ 550 (550)
T 3m00_A 548 IKI 550 (550)
T ss_dssp CCC
T ss_pred CCC
Confidence 986
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=7.3e-165 Score=1354.93 Aligned_cols=537 Identities=37% Similarity=0.659 Sum_probs=502.7
Q ss_pred ccCCCCCCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHHHhCcccCcHHHHH
Q 008206 18 VNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIK 97 (574)
Q Consensus 18 ~~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~~lk~~vr~~l~~~~~~~~d~~~~l~lID~lqrLGi~~hF~~EI~ 97 (574)
..||++|||||+|||+||++.++ ++..+.+.+|+++||+|||+||.+.++ +++++|++||+||||||+|||++||+
T Consensus 13 ~~~~~~~~~ps~W~~~fl~~~~~-~~~~~~~~~~~e~Lk~eVr~~l~~~~~---~~~~~L~lID~lqRLGi~~hF~~EI~ 88 (555)
T 3n0f_A 13 EARRSADYEPNSWDYDFLLSSDT-DESIEVYKDKAKKLEAEVRREINNEKA---EFLTLLELIDNVQRLGLGYRFESDIR 88 (555)
T ss_dssp ----CCCCCCCTTCHHHHTCC------CHHHHHHHHHHHHHHHHHHHCTTS---CHHHHHHHHHHHHHTTCGGGSHHHHH
T ss_pred ccCCCCCCCcccccccccccCCc-chhhHHHHHHHHHHHHHHHHHHHhccc---CHHHHHHHHHHHHHcCchhhhHHHHH
Confidence 36999999999999999997543 345578899999999999999975321 69999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCchHHHHHHHHHHHhcCceechhhhccccccccccccccccChHHHHhHhhhccCCCC
Q 008206 98 EALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQ 177 (574)
Q Consensus 98 ~~L~~i~~~~~~~~~~~~~~~~~Dl~~~al~FRlLR~hGy~vS~dvf~~F~d~~g~F~~~~~~dv~glL~LYeAs~l~~~ 177 (574)
++|++||+. .+++++ . ..||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||||||||+++|
T Consensus 89 ~~L~~i~~~-~~~~~~-~---~~DL~~~Al~FRLLR~hGy~VS~dvF~~F~d~~G~F~~~l~~dv~glL~LYeAs~l~~~ 163 (555)
T 3n0f_A 89 RALDRFVSS-GGFDGV-T---KTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALE 163 (555)
T ss_dssp HHHHHHHHT-CHHHHH-T---TTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHhh-cccccc-c---cCCHHHHHHHHHHHHhcCCCcChHHHhcccccCccchhhhhhhhHHHHHHHHHHhcccC
Confidence 999999973 000112 1 46999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHhh-cCCCchHHHHHHHccCCccCCcchHHHhhhHHhhhcCCccccHHHHHHHhhchHHHHH
Q 008206 178 GENILEEACEFSRKHLKSLLS-HLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQA 256 (574)
Q Consensus 178 gE~iLdea~~ft~~~L~~~~~-~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~~n~~lLelAkldFn~~Q~ 256 (574)
||+|||||++||++||++.+. +++++|+++|+|||++|||+++||||||+||++|+++ +++|++||||||||||+||+
T Consensus 164 gE~iLdeA~~Fs~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~-~~~n~~lLelAKlDFN~~Q~ 242 (555)
T 3n0f_A 164 GENILDEARVFAISHLKELSEEKIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKK-EDANQVLLELAILDYNMIQS 242 (555)
T ss_dssp TCHHHHHHHHHHHHHHHTCCHHHHCHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHTTC-TTCCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHhcCCcccCchHHHHHHHHHHhccc-ccccHHHHHHHHHhHHHHHH
Confidence 999999999999999999775 5678899999999999999999999999999999999 99999999999999999999
Q ss_pred hhHHHHHHHHHHHhHhcCcCCChhhhhhHhhhhhhhhccccCCCcchhhHHHHHHHHHHHhhhhhhcccCCHHHHHHHHH
Q 008206 257 LHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTH 336 (574)
Q Consensus 257 ~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ 336 (574)
+||+||++++|||+++||.+++||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+||++.||+
T Consensus 243 ~hq~EL~~lsrWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygt~eEl~~ft~ 322 (555)
T 3n0f_A 243 VYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTD 322 (555)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHcCCcccCCchhhHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 008206 337 AIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPT 415 (574)
Q Consensus 337 ai~~~~~~~~rWD~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~-g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT 415 (574)
||+ |||++++++||+|||+||.+|+++++|++.++.+ ++. ++++|++++|+++++||++||+|+++||+||
T Consensus 323 ai~-------RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~-~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT 394 (555)
T 3n0f_A 323 AVE-------RWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGE-NILPYLTKAWADLCNAFLQEAKWLYNKSTPT 394 (555)
T ss_dssp HHH-------HTCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHH-------hcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHccCCCCC
Confidence 999 9999999999999999999999999999999888 665 7999999999999999999999999999999
Q ss_pred hHHHHhhhccccchhhHHHHHHHhcCCccccHHHHhhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchhhHHHHh
Q 008206 416 FEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQ 495 (574)
Q Consensus 416 ~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V~cyMke 495 (574)
+||||+||.+|+|+++++++++++||+. +|+++++|+.++|+|+++++.|+||+|||+||++|++||+++|+|+|||+|
T Consensus 395 ~EEYl~na~vSsg~~~l~~~~~~~mg~~-lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~vas~V~cYMke 473 (555)
T 3n0f_A 395 FDDYFGNAWKSSSGPLQLIFAYFAVVQN-IKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRT 473 (555)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHHHHCSS-CCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHH
T ss_pred HHHHHHhcccchhHHHHHHHHHHhcCCC-CCHHHHHhcccchHHHHHHHHHHHHhccchhhhhhhhcCCcchHHHHHHHH
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhccccccCCCCCCCChhHHHHHHhhhcccCC
Q 008206 496 YGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLP 573 (574)
Q Consensus 496 ~g~S~eeA~~~i~~~ie~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~Y~~~Dgyt~~~~~~k~~i~~ll~~pi~ 573 (574)
+|+|+|+|+++++++|+++||+||++|++++++|++|+++++|+||++++||+++||||.|+..||++|++||++|||
T Consensus 474 ~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 474 KGISEELATESVMNLIDETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLSVITEPIL 551 (555)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHSCCC---CCHHHHHHHHHHHHTTSCCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999998899999999999999999999999999999877899999999999997
No 4
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=1e-160 Score=1328.24 Aligned_cols=539 Identities=37% Similarity=0.641 Sum_probs=515.6
Q ss_pred cCCCCCCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHHHhCcccCcHHHHHH
Q 008206 19 NRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKE 98 (574)
Q Consensus 19 ~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~~lk~~vr~~l~~~~~~~~d~~~~l~lID~lqrLGi~~hF~~EI~~ 98 (574)
.||++|||||+|||+||++.+. ++..+.+.+++++||++||+|+.+.. |++++|++||+||||||+|||++||++
T Consensus 1 ~r~~~~~~ps~W~~~fl~~~~~-~~~~~~~~~~~~~Lk~~V~~~~~~~~----d~~~~l~liD~lqrLGi~~hF~~EI~~ 75 (543)
T 2ong_A 1 MRRSGNYNPSRWDVNFIQSLLS-DYKEDKHVIRASELVTLVKMELEKET----DQIRQLELIDDLQRMGLSDHFQNEFKE 75 (543)
T ss_dssp CCCCCCCCCCSSCHHHHHHCCC-SSCSTHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHTTGGGTTHHHHHH
T ss_pred CCCCCCCCCCcCCcccccCCCc-hhhhhHHHHHHHHHHHHHHHHHhccc----CHHHHHHHHHHHHhCCchhhhHHHHHH
Confidence 3899999999999999986433 34456789999999999999998776 899999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCchHHHHHHHHHHHhcCceechhhhccccccccccccccccChHHHHhHhhhccCCCCC
Q 008206 99 ALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQG 178 (574)
Q Consensus 99 ~L~~i~~~~~~~~~~~~~~~~~Dl~~~al~FRlLR~hGy~vS~dvf~~F~d~~g~F~~~~~~dv~glL~LYeAs~l~~~g 178 (574)
+|++||++|..+++++... ..|||+|||+|||||||||+||||||++|||++|+|++++++||+||||||||||+++||
T Consensus 76 ~L~~i~~~~~~~~~~~~~~-~~dl~~~al~FRlLR~hGy~vs~dvf~~Fk~~~g~F~~~l~~d~~glL~Ly~As~l~~~g 154 (543)
T 2ong_A 76 ILSSIYLDHHYYKNPFPKE-ERDLYSTSLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEG 154 (543)
T ss_dssp HHHHHHHTTTCCCSSCCCC-CCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCTTGGGCHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHhhcccccccccc-cCCHHHHHHHHHHHHHcCCCccHHHHhcccCCCCCccchhhhccHHHHHHHHHHHcCCCC
Confidence 9999999984444443311 369999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhhc-C-CCchHHHHHHHccCCccCCcchHHHhhhHHhhhcCCccccHHHHHHHhhchHHHHH
Q 008206 179 ENILEEACEFSRKHLKSLLSH-L-STPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQA 256 (574)
Q Consensus 179 E~iLdea~~ft~~~L~~~~~~-~-~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~~n~~lLelAkldFn~~Q~ 256 (574)
|+|||||++||++||++.+.+ + +++|+++|+|||++|||+++||||||+||++|+++ +++|++||||||||||+||+
T Consensus 155 E~iL~eA~~Ft~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~-~~~n~~lLelAkldFn~~Q~ 233 (543)
T 2ong_A 155 ETTLESAREFATKFLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKR-PDMNPVVLELAILDLNIVQA 233 (543)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHSCTTTSCSTTTHHHHHHHHHTC-SSCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHhhhHhccchHHHHHHHHHHhccC-ccccHHHHHHHHHhHHHHHH
Confidence 999999999999999999986 5 78999999999999999999999999999999999 99999999999999999999
Q ss_pred hhHHHHHHHHHHHhHhcCcCCChhhhhhHhhhhhhhhccccCCCcchhhHHHHHHHHHHHhhhhhhcccCCHHHHHHHHH
Q 008206 257 LHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTH 336 (574)
Q Consensus 257 ~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ 336 (574)
+||+||++++|||+++||.+++||+|||+++||||++|++|||++|.+|+++||+++|+|++||+||+|||++|++.||+
T Consensus 234 ~hq~El~~l~rWwk~~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~litviDD~fD~~gt~eEl~~ft~ 313 (543)
T 2ong_A 234 QFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTD 313 (543)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHSCSSCCCHHHHHHTHHHHTCSTTCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 99999999999999999987899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 008206 337 AIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPT 415 (574)
Q Consensus 337 ai~~~~~~~~rWD~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~-g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT 415 (574)
||+ |||+++++.+|+|||+||.++++++++++.++.+ +++ ++++|++++|++++++|++||+|+++||+||
T Consensus 314 ai~-------rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~-~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt 385 (543)
T 2ong_A 314 LIR-------RWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGV-NVIPYLRQSWVDLADKYMVEARWFYGGHKPS 385 (543)
T ss_dssp HHH-------TTCSSTTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHH-------hcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 999 9999999999999999999999999999999988 666 8999999999999999999999999999999
Q ss_pred hHHHHhhhccccchhhHHHHHHHhcCCccccHHHHhhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchhhHHHHh
Q 008206 416 FEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQ 495 (574)
Q Consensus 416 ~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V~cyMke 495 (574)
+||||+||.+|+|+++++++++++||.. +|+++++|+.++|+++++++.|+||+|||+||++|+++|+++|+|+|||+|
T Consensus 386 ~eEYl~~~~vS~g~~~l~~~~~~~~g~~-~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~~~n~V~cyMke 464 (543)
T 2ong_A 386 LEEYLENSWQSISGPCMLTHIFFRVTDS-FTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSD 464 (543)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHSSC-CCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSHHHHHTSCCCCHHHHHHHH
T ss_pred HHHHHhcccccchHHHHHHHHHHHcCCC-CCHHHHHHhcccHHHHHHHHHHHHHhcccchhhhccccCCccHHHHHHHHH
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCChhHHHHHHHHhhhhccccccCCCCCCCChhHHHHHHhhhcccCC
Q 008206 496 YGVSEEEACNKIKGMVEIEWMNINEEI-QDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLP 573 (574)
Q Consensus 496 ~g~S~eeA~~~i~~~ie~~wk~ln~e~-l~~~~~p~~~~~~~lN~aR~~~~~Y~~~Dgyt~~~~~~k~~i~~ll~~pi~ 573 (574)
+|+|+|+|+++++++|+++||+||++| ++++++|++|+++++|+||+++++|+++||||.|++.||++|++||++|||
T Consensus 465 ~g~s~eeA~~~i~~~ie~~wk~ln~e~~l~~~~vp~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~l~~~pi~ 543 (543)
T 2ong_A 465 YNASEAEARKHVKWLIAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRTLFEPFA 543 (543)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHTCSSCSSCHHHHHHHHHHHHHHHHHTSSCSTTSSSCTTHHHHHHHHHTSCC-
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHeehhheeCCCCCCCccHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999 998899999999999999999999999999999977899999999999997
No 5
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=4.1e-160 Score=1323.06 Aligned_cols=538 Identities=38% Similarity=0.687 Sum_probs=489.7
Q ss_pred ccCCCCCCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHHHhCcccCcHHHHH
Q 008206 18 VNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIK 97 (574)
Q Consensus 18 ~~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~~lk~~vr~~l~~~~~~~~d~~~~l~lID~lqrLGi~~hF~~EI~ 97 (574)
+.||++|||||+|||+||+ ++++++..+.+.+++++||++||+|+.+.. |++++|++||+||||||+|||++||+
T Consensus 4 ~~r~~~~~~ps~W~~~fl~-s~~~~~~~~~~~~~~~~Lk~~V~~~~~~~~----d~~~~l~lvD~lqrLGi~~hF~~EI~ 78 (549)
T 1n1b_A 4 QIRRSGNYQPALWDSNYIQ-SLNTPYTEERHLDRKAELIVQVRILLKEKM----EPVQQLELIHDLKYLGLSDFFQDEIK 78 (549)
T ss_dssp -----------CCCHHHHH-HCCCSTTSHHHHHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHHHTTCGGGGHHHHH
T ss_pred cCCCCCCCCCCCCCCCccc-CCCcchhhhHHHHHHHHHHHHHHHHHhccc----CHHHHHHhHHHHHhCCchhhhHHHHH
Confidence 4699999999999999995 444444556789999999999999998776 89999999999999999999999999
Q ss_pred HHHHHHHhhc-CCCCCCCCCCCCCchHHHHHHHHHHHhcCceechhhhcccccccc-ccccccccChHHHHhHhhhccCC
Q 008206 98 EALQTIYDSH-VNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKG-EFKAMLTNDAKGLLCLYEASYLR 175 (574)
Q Consensus 98 ~~L~~i~~~~-~~~~~~~~~~~~~Dl~~~al~FRlLR~hGy~vS~dvf~~F~d~~g-~F~~~~~~dv~glL~LYeAs~l~ 175 (574)
++|++||++| .. +.+.....|||+|||+|||||||||+||||||++|||++| +|++++++||+||||||||||++
T Consensus 79 ~~L~~i~~~~~~~---~~~~~~~~dl~~~al~FRlLR~hGy~Vs~dvf~~Fk~~~g~~F~~~l~~d~~glL~LY~As~l~ 155 (549)
T 1n1b_A 79 EILGVIYNEHKCF---HNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLL 155 (549)
T ss_dssp HHHHHHHHHCHHH---HHCCCCSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhccc---cccccccCChhhchhhhhHHHhcCCCcCHHHHhhccCCCCCccchhhhhccHHHHHHHHHHhcC
Confidence 9999999876 21 0011114699999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhc---C-CCchHHHHHHHccCCccCCcchHHHhhhHHhhhcCCccccHHHHHHHhhch
Q 008206 176 VQGENILEEACEFSRKHLKSLLSH---L-STPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDF 251 (574)
Q Consensus 176 ~~gE~iLdea~~ft~~~L~~~~~~---~-~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~~n~~lLelAkldF 251 (574)
+|||+|||||++||++||++.+.+ + +++|+++|+|||++|||+++||||||+||++|+++ +++|++|||||||||
T Consensus 156 ~~gE~iL~eA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~-~~~n~~lLelAkldF 234 (549)
T 1n1b_A 156 RKGEDTLELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARR-PDMNPLIFELAKLNF 234 (549)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTC------CHHHHHHHHHHHHSCGGGCCTTTSHHHHHHHHHHC-TTCCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHhcCchhcCchHHHHHHHHHHhccc-ccccHHHHHHHHHhH
Confidence 999999999999999999999885 5 78899999999999999999999999999999999 999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHhHhcCcCCChhhhhhHhhhhhhhhccccCCCcchhhHHHHHHHHHHHhhhhhhcccCCHHHH
Q 008206 252 NLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEEL 331 (574)
Q Consensus 252 n~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl 331 (574)
|+||++||+||++++|||+++||.+++||+|||+++||||++|++|||++|.+|+++||+++|+|++||+||+|||++|+
T Consensus 235 n~~Q~~hq~El~~l~rWwke~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~l~tviDD~yD~~gt~eEl 314 (549)
T 1n1b_A 235 NIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDEL 314 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhccCCCHHHH
Confidence 99999999999999999999999878999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhc
Q 008206 332 KLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHA 410 (574)
Q Consensus 332 ~~ft~ai~~~~~~~~rWD~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~-g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~ 410 (574)
+.||+||+ |||+++++++|+|||+||.++++++++++.++.+ ++. ++++|++++|++++++|++||+|+++
T Consensus 315 ~~ft~ai~-------rWD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~-~~~~~l~~~w~~l~~ayl~EAkW~~~ 386 (549)
T 1n1b_A 315 ELFTDTFK-------RWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGF-FCLQYLRKSVVDLVEAYFHEAKWYHS 386 (549)
T ss_dssp HHHHHHHH-------HTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-------hcCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999 9999999999999999999999999999999987 666 79999999999999999999999999
Q ss_pred CCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHH-HhhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchh
Q 008206 411 KYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRA-LDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSV 489 (574)
Q Consensus 411 g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~-~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V 489 (574)
||+||+||||+||.+|+|+++++++++++||.. +|+++ ++|+.++|+++++++.|+||+|||+||++|+++|+++|+|
T Consensus 387 g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~-lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~v~n~V 465 (549)
T 1n1b_A 387 GYTPSLDEYLNIAKISVASPAIISPTYFTFANA-SHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTI 465 (549)
T ss_dssp TCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTC-CCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------CCCCHH
T ss_pred CCCCCHHHHHHhcccchhHHHHHHHHHHHcCCC-CcHHHHHhhhcccHHHHHHHHHHHHHhcccchhhhhhccCCccHHH
Confidence 999999999999999999999999999999999 99999 9999999999999999999999999999999999999999
Q ss_pred hHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhccccccCCCCCCCChhHHHHHHhhhc
Q 008206 490 ECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLV 569 (574)
Q Consensus 490 ~cyMke~g~S~eeA~~~i~~~ie~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~Y~~~Dgyt~~~~~~k~~i~~ll~ 569 (574)
+|||+|+|+|+|||+++++++|+++||+||++|++|+++|++|+++++|+||++++||+++||||.|+..||++|++||+
T Consensus 466 ~cyMke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~vp~~~~~~~~n~~R~~~~~Y~~~Dg~t~~~~~~k~~i~~l~~ 545 (549)
T 1n1b_A 466 QCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLF 545 (549)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHHTTTSCCC----CHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHeeehheeCCCCCCCCcHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999889999999999999999999999999999997789999999999
Q ss_pred ccCC
Q 008206 570 DPLP 573 (574)
Q Consensus 570 ~pi~ 573 (574)
+|||
T Consensus 546 ~pi~ 549 (549)
T 1n1b_A 546 EPYA 549 (549)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9997
No 6
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=3.2e-159 Score=1319.74 Aligned_cols=534 Identities=37% Similarity=0.628 Sum_probs=468.2
Q ss_pred ccccCCCCCCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHHHhCcccCcHHH
Q 008206 16 ADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENE 95 (574)
Q Consensus 16 ~~~~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~~lk~~vr~~l~~~~~~~~d~~~~l~lID~lqrLGi~~hF~~E 95 (574)
.+..||++|||||+|||+||++.+. ++..+.+.+++++||++||+|+.+.. |++++|++||+||||||+|||++|
T Consensus 31 ~~~~r~~~~~~ps~W~~~fl~~~~~-~~~~~~~~~~~~~Lk~~Vr~~~~~~~----d~~~~l~lID~lqrLGi~~hFe~E 105 (569)
T 2j5c_A 31 KDRWIRTGGYQPTLWDFSTIQSFDS-EYKEEKHLMRAAGMIDQVKMMLQEEV----DSIRRLELIDDLRRLGISCHFERE 105 (569)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHTCGGGGHHH
T ss_pred ccccCCCCCCCCCcCCcccccCCCc-hhhhHHHHHHHHHHHHHHHHHHhccc----cHHHHHHHHHHHHhCCchhhhHHH
Confidence 3457999999999999999986433 34445688999999999999998776 899999999999999999999999
Q ss_pred HHHHHHHHH-hhcCCCCCCCCCCCCCchHHHHHHHHHHHhcCceechhhhcccccccc-ccccccccChHHHHhHhhhcc
Q 008206 96 IKEALQTIY-DSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKG-EFKAMLTNDAKGLLCLYEASY 173 (574)
Q Consensus 96 I~~~L~~i~-~~~~~~~~~~~~~~~~Dl~~~al~FRlLR~hGy~vS~dvf~~F~d~~g-~F~~~~~~dv~glL~LYeAs~ 173 (574)
|+++|++|| +++.. . ..||++|||+|||||||||+||||||++|||++| +|++++++||+||||||||||
T Consensus 106 I~~~L~~i~~~~~~~-----~---~~Dl~~~al~FRlLR~hGy~Vs~dvF~~Fkd~~G~~F~~~l~~dv~glL~LY~As~ 177 (569)
T 2j5c_A 106 IVEILNSKYYTNNEI-----D---ERDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASF 177 (569)
T ss_dssp HHHHHHHHTTSSCCS-----C---TTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCSSSSSBCGGGGGCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCc-----c---cCChhhhhHHhHHHHhcCCCcCHHHHhcccCCCCCccccchhhccHHHHHHHHHHh
Confidence 999999999 76410 1 5799999999999999999999999999999999 999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhhcC-CCchHHHHHHHccCCccCCcchHHHhhhHHhhhcCCccccHHHHHHHhhchH
Q 008206 174 LRVQGENILEEACEFSRKHLKSLLSHL-STPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFN 252 (574)
Q Consensus 174 l~~~gE~iLdea~~ft~~~L~~~~~~~-~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~~n~~lLelAkldFn 252 (574)
+++|||+|||||++||++||++.+.++ +++|+++|+|||++|||+++||||||+||++|+++ +++|++||||||||||
T Consensus 178 l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~-~~~n~~lLelAkldFn 256 (569)
T 2j5c_A 178 LSAQGEETLRLARDFATKFLQKRVLVDKDINLLSSIERALELPTHWRVQMPNARSFIDAYKRR-PDMNPTVLELAKLDFN 256 (569)
T ss_dssp TCCTTCHHHHHHHHHHHHTTSSCC----CHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHTTC-TTCCHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhcCccccCcHHHHHHHHHHHhccC-ccccHHHHHHHHHhHH
Confidence 999999999999999999999998877 78999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHhHhcCcCCChhhhhhHhhhhhhhhccccCCCcchhhHHHHHHHHHHHhhhhhhcccCCHHHHH
Q 008206 253 LLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELK 332 (574)
Q Consensus 253 ~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~ 332 (574)
+||++||+||++++|||+++||.+++||+|||+++||||++|++|||++|.+|+++||+++|+|++||+||+|||++|++
T Consensus 257 ~~Q~~hq~EL~~l~rWwke~~L~~kl~faRdR~ve~Yfw~~a~~feP~~S~~Rl~~aK~~~litviDD~fD~ygT~eEl~ 336 (569)
T 2j5c_A 257 MVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQ 336 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHCC--CCCHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHH
Confidence 99999999999999999999998789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhcC
Q 008206 333 LFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAK 411 (574)
Q Consensus 333 ~ft~ai~~~~~~~~rWD~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~-g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~g 411 (574)
.||+||+ |||+++++.+|+|||+||.+|++++++++.++.+ +++ ++++|++++|++++++|++||+|+++|
T Consensus 337 ~ft~ai~-------rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~-~~~~~l~~~w~~l~~ayl~EAkW~~~g 408 (569)
T 2j5c_A 337 LFTTAIQ-------RWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGF-DSTPYLRKVWVGLIESYLIEAKWYYKG 408 (569)
T ss_dssp HHHHHHH-------HTSSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-------HcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999 9999999999999999999999999999999988 666 899999999999999999999999999
Q ss_pred CCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHhhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchhhH
Q 008206 412 YVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVEC 491 (574)
Q Consensus 412 ~vPT~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V~c 491 (574)
|+||+||||+||.+|+|+++++++++++||.. +|+++++|+.++|+++++++.|+||+|||+||++|+++|+++|+|+|
T Consensus 409 ~vPt~eEYl~~~~vSsg~~~l~~~~~~~~g~~-lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~s~V~c 487 (569)
T 2j5c_A 409 HKPSLEEYMKNSWISIGGIPILSHLFFRLTDS-IEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQC 487 (569)
T ss_dssp CCCCHHHHHHHHHHHTSCHHHHHHHHHHSCSS-CCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC----------CCHHHH
T ss_pred CCCCHHHHHhcccccchHHHHHHHHHHHcCCC-CCHHHHHHhhccHHHHHHHHHHHHHhcccchhhhhcccCCccHHHHH
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhccccccC-CCCCCCChhHHHHHHhhhcc
Q 008206 492 YVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNG-DGYTNSTGKTKDRIASLLVD 570 (574)
Q Consensus 492 yMke~g~S~eeA~~~i~~~ie~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~Y~~~-Dgyt~~~~~~k~~i~~ll~~ 570 (574)
||+|+|+|+|||+++++++|+++||+||++|++ +++|++|+++++|+||+++++|+++ ||||.|+..||++|++||++
T Consensus 488 yMke~g~s~eeA~~~i~~~ie~~wk~ln~e~l~-~~vp~~~~~~~~nlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~ 566 (569)
T 2j5c_A 488 YMNEKNASEEEAREHVRSLIDQTWKMMNKEMMT-SSFSKYFVEVSANLARMAQWIYQHESDGFGMQHSLVNKMLRDLLFH 566 (569)
T ss_dssp C------CCHHHHHHHHHHHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHTGGGSCTTC-CCCHHHHHHHHHHTS
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHheeehhccCCCcCCCCchHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999 8899999999999999999999999 99999977899999999999
Q ss_pred cCC
Q 008206 571 PLP 573 (574)
Q Consensus 571 pi~ 573 (574)
|||
T Consensus 567 pi~ 569 (569)
T 2j5c_A 567 RYE 569 (569)
T ss_dssp CCC
T ss_pred CCC
Confidence 997
No 7
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=2.9e-143 Score=1228.49 Aligned_cols=492 Identities=36% Similarity=0.635 Sum_probs=460.3
Q ss_pred CHHHHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhc-CCCCCCCCCCCCCchHHHHHHHHHHHhcCceechhhhcccccc
Q 008206 72 TLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSH-VNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDE 150 (574)
Q Consensus 72 d~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~~-~~~~~~~~~~~~~Dl~~~al~FRlLR~hGy~vS~dvf~~F~d~ 150 (574)
|++++|++||+||||||+|||++||+++|++||++| ++|+++++.....||++|||+|||||||||+||||||++|+|+
T Consensus 297 d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d~ 376 (817)
T 3sdr_A 297 DLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNFKDA 376 (817)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCC
T ss_pred cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHHcCCCccHhHHHHHhhc
Confidence 789999999999999999999999999999999999 6665543211146999999999999999999999999999999
Q ss_pred cccccccc---ccChHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHHHhhc--------CCCchHHHHHHHccCCccCC
Q 008206 151 KGEFKAML---TNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH--------LSTPLVDQVEHSLEIPLHRG 219 (574)
Q Consensus 151 ~g~F~~~~---~~dv~glL~LYeAs~l~~~gE~iLdea~~ft~~~L~~~~~~--------~~~~l~~~V~~aL~~P~~~~ 219 (574)
+|+|++++ .+||+||||||||||+++|||+|||||++||++||++.+.+ ++++|++||+|||++|||++
T Consensus 377 ~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~~~ 456 (817)
T 3sdr_A 377 NGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHAS 456 (817)
T ss_dssp --CBCCCSSCHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTSGGGGSHHHHHTTHHHHHHHHHHCCSTTC
T ss_pred CCCceechhhhchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhcCchhcc
Confidence 99999865 69999999999999999999999999999999999998763 23789999999999999999
Q ss_pred cchHHHhhhHHhhhcCCcc------------ccHHHHHHHhhchHHHHHhhHHHHHHHHHHHhHhcCcCCChhhhhhHhh
Q 008206 220 MPRLEARQYISIYEADNST------------RNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVE 287 (574)
Q Consensus 220 ~~rlear~yi~~Y~~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve 287 (574)
+||||||+||++|+++ +. +|++||||||||||+||++||+||++++||||++|| .++||||||++|
T Consensus 457 l~Rlear~yI~~Y~~~-~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~ve 534 (817)
T 3sdr_A 457 VPRVEAKRYCQVYRPD-YARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGL-PLFTFARERPLE 534 (817)
T ss_dssp CHHHHHHHHHTTCCTT-CCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSG-GGCTTSCCCHHH
T ss_pred ChHHHHHHHHHHhCcc-chhhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhhhhhceeHHhcCC-CcCccHHHHHHH
Confidence 9999999999999988 65 499999999999999999999999999999999999 699999999999
Q ss_pred hhhhhhccccCCCcchhhHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHH
Q 008206 288 CYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFAL 367 (574)
Q Consensus 288 ~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~~~~~~~~rWD~~~~~~lpe~mk~~~~al 367 (574)
||||++|++|||+||.+|+++||+++|++++||+||+|||+||++.||+||+ |||++++++||+|||+||.+|
T Consensus 535 ~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~-------RWD~~~~~~LPeymk~~~~aL 607 (817)
T 3sdr_A 535 FYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVR-------RWDLSFTENLPDYMKLCYQIY 607 (817)
T ss_dssp HHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH-------HTCGGGGGGSCHHHHHHHHHH
T ss_pred HHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHH-------HcCchhhhcCchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhh-HHHHHHHhcCCccc
Q 008206 368 LDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPM-LAVEALVGLEDMAI 445 (574)
Q Consensus 368 ~~~~~ei~~~~~~-g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~-l~~~~~~~mg~~~l 445 (574)
+++++|++.++.+ ++. ++++|++++|++++++|++||+|+++||+||+||||+||.+|+|+++ ++.+++++||+. +
T Consensus 608 ~~~~~e~~~~~~~~~g~-~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~~g~~-l 685 (817)
T 3sdr_A 608 YDIVHEVAWEAEKEQGR-ELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQL-L 685 (817)
T ss_dssp HHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTCTTCC-C
T ss_pred HHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHHcCCC-C
Confidence 9999999999887 555 79999999999999999999999999999999999999999999999 888899999999 9
Q ss_pred cHHHHhhhc--chhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchhhHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHhh
Q 008206 446 TKRALDWAI--SVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQY-GVSEEEACNKIKGMVEIEWMNINEEI 522 (574)
Q Consensus 446 ~~e~~e~~~--~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V~cyMke~-g~S~eeA~~~i~~~ie~~wk~ln~e~ 522 (574)
|+++++|+. +.|+|+++++.|+||+|||+||++|++||+++|+|+|||||+ |+|+|||+++++++|+++||+||++|
T Consensus 686 t~e~~e~~~~~s~p~l~~~~~~I~RL~NDi~S~k~E~~rG~~assV~cYMke~~gvS~EeA~~~i~~~Ie~~wKeln~e~ 765 (817)
T 3sdr_A 686 SQEALEKVDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTREF 765 (817)
T ss_dssp CHHHHHTTCCTTSCSHHHHHHHHHHHHHHHHSSCC------CCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhcccccchHHHHHHHHHHHHHhccchHHHHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999976 456999999999999999999999999999999999999999 79999999999999999999999999
Q ss_pred cCCCCCChhHHHHHHHHhhhhccccccCCCCCCCChhHHHHHHhhhcccCCC
Q 008206 523 QDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM 574 (574)
Q Consensus 523 l~~~~~p~~~~~~~lN~aR~~~~~Y~~~Dgyt~~~~~~k~~i~~ll~~pi~~ 574 (574)
++++++|++|+++++|+||++++||+++||||.|+..||++|++||++|||+
T Consensus 766 l~~~~~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~l 817 (817)
T 3sdr_A 766 LKPDDVPFACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817 (817)
T ss_dssp HSCCSSCHHHHHHHHHHHHHHHHHTCSCCSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcCCCCC
Confidence 9988999999999999999999999999999999778999999999999985
No 8
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=9.3e-143 Score=1217.06 Aligned_cols=490 Identities=32% Similarity=0.559 Sum_probs=460.3
Q ss_pred CHHHHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhc-CCCCCCCCCCCCCchHHHHHHHHHHHhcCceechhhhcccccc
Q 008206 72 TLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSH-VNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDE 150 (574)
Q Consensus 72 d~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~~-~~~~~~~~~~~~~Dl~~~al~FRlLR~hGy~vS~dvf~~F~d~ 150 (574)
|++++|++||+||||||+|||++||+++|++||++| ++|+++++.....||++|||+|||||||||+||||||++|+|+
T Consensus 245 d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d~ 324 (764)
T 3p5p_A 245 DLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSSDVLNNFKDE 324 (764)
T ss_dssp HHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCT
T ss_pred cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHhcCCCccHhHHHhhhcC
Confidence 789999999999999999999999999999999999 6665543211136999999999999999999999999999999
Q ss_pred ccccccc---cccChHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHHHhhc---CCCchHHHHHHHccCCccCCcchHH
Q 008206 151 KGEFKAM---LTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH---LSTPLVDQVEHSLEIPLHRGMPRLE 224 (574)
Q Consensus 151 ~g~F~~~---~~~dv~glL~LYeAs~l~~~gE~iLdea~~ft~~~L~~~~~~---~~~~l~~~V~~aL~~P~~~~~~rle 224 (574)
+|+|+++ +.+|++||||||||||+++|||+|||||++||++||++.+.+ ++++|++||+|||++|||+++||||
T Consensus 325 ~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~Rle 404 (764)
T 3p5p_A 325 NGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLE 404 (764)
T ss_dssp TSCBCSCTTCSCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHHTSCSSSHHHHHHHHHHHSCGGGCCHHHH
T ss_pred CCCccccccccccccHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhcCchhccchHHH
Confidence 9999974 689999999999999999999999999999999999998863 5788999999999999999999999
Q ss_pred HhhhHHhhhcCCcc------------ccHHHHHHHhhchHHHHHhhHHHHHHHHHHHhHhcCcCCChhhhhhHhhhhhhh
Q 008206 225 ARQYISIYEADNST------------RNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWI 292 (574)
Q Consensus 225 ar~yi~~Y~~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~ 292 (574)
||+||++|+++ +. +|++||||||||||+||++||+||++++||||++|+ .++||||||++|||||+
T Consensus 405 ar~yI~~Y~~~-~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l~rWwk~~~l-~~l~faRdr~ve~Yfw~ 482 (764)
T 3p5p_A 405 ARSYIDSYDDN-YVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGM-ADINFTRHRVAEVYFSS 482 (764)
T ss_dssp HHHHHHHCCTT-CCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-TTTTCCHHHHHHHHHHT
T ss_pred HHHHHHHhccc-chhhhcccccccccccHHHHHHHHHHHHHHHHHhHHHhhhhceeHHhcCC-CcCccHHHHHHHHHHHH
Confidence 99999999988 65 499999999999999999999999999999999999 69999999999999999
Q ss_pred hccccCCCcchhhHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH
Q 008206 293 LGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVK 372 (574)
Q Consensus 293 ~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~~~~~~~~rWD~~~~~~lpe~mk~~~~al~~~~~ 372 (574)
+| |||+||.+|+++||+++|++++||+||+|||+||++.||+||+ |||++++++||+|||+||.+|+++++
T Consensus 483 ~~--feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~-------RWD~~~~~~LPeymk~~f~aL~~~~~ 553 (764)
T 3p5p_A 483 AT--FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVK-------RWDTSLLHEIPECMQTCFKVWFKLME 553 (764)
T ss_dssp CC--CCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHH-------HTSSTTGGGSCHHHHHHHHHHHHHHH
T ss_pred Hh--CCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHH-------HcCchhhhcCchHHHHHHHHHHHHHH
Confidence 99 9999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHh
Q 008206 373 EMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALD 451 (574)
Q Consensus 373 ei~~~~~~-g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e 451 (574)
|++.++.+ ++. ++++|++++|++++++|++||+|+++||+||+||||+||.+|+|++++++.++++||.. +|+++++
T Consensus 554 ei~~~~~~~~g~-~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~~G~~-lt~e~~e 631 (764)
T 3p5p_A 554 EVNNDVVKVQGR-DMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGEL-VKDDVVE 631 (764)
T ss_dssp HHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHTSSSC-CCGGGHH
T ss_pred HHHHHHHHhcCc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHHcCCC-CcHHHHh
Confidence 99998887 444 69999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred hhcchhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchhhHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCC
Q 008206 452 WAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQY-GVSEEEACNKIKGMVEIEWMNINEEIQD-PNHPP 529 (574)
Q Consensus 452 ~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V~cyMke~-g~S~eeA~~~i~~~ie~~wk~ln~e~l~-~~~~p 529 (574)
|+..+|+|+++++.|+||+|||+||++|++||+++|+|+|||||+ |+|+|+|+++++++|+++||+||++|++ ++++|
T Consensus 632 ~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~~~~~p 711 (764)
T 3p5p_A 632 KVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIP 711 (764)
T ss_dssp HHSTTSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSC
T ss_pred hhhhhHHHHHHHHHHHHhhhcccchHHHHhcCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 977779999999999999999999999999999999999999999 7999999999999999999999999997 78899
Q ss_pred hhHHHHHHHHhhhhccccccCCCCCCCChhHHHHHHhhhcccCCC
Q 008206 530 LQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM 574 (574)
Q Consensus 530 ~~~~~~~lN~aR~~~~~Y~~~Dgyt~~~~~~k~~i~~ll~~pi~~ 574 (574)
++|+++++|+||++++||+++||||.|+..||++|++||++||++
T Consensus 712 ~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 756 (764)
T 3p5p_A 712 MGCKSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQV 756 (764)
T ss_dssp HHHHHHHHHTHHHHHHHSCC-------CCCHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999998767999999999999984
No 9
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=1.1e-142 Score=1219.57 Aligned_cols=490 Identities=33% Similarity=0.593 Sum_probs=463.0
Q ss_pred CHHHHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhc-CCCCCCCCCCCCCchHHHHHHHHHHHhcCceechhhhcccccc
Q 008206 72 TLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSH-VNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDE 150 (574)
Q Consensus 72 d~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~~-~~~~~~~~~~~~~Dl~~~al~FRlLR~hGy~vS~dvf~~F~d~ 150 (574)
|++++|++||+||||||+|||++||+++|+++|++| +++++++......||++|||+|||||||||+||||||++|+|+
T Consensus 269 d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d~ 348 (785)
T 3s9v_A 269 DLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFRDE 348 (785)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCT
T ss_pred cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccccCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Confidence 789999999999999999999999999999999999 6665443211146999999999999999999999999999999
Q ss_pred cccccccc---ccChHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHHHhhc--------CCCchHHHHHHHccCCccCC
Q 008206 151 KGEFKAML---TNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH--------LSTPLVDQVEHSLEIPLHRG 219 (574)
Q Consensus 151 ~g~F~~~~---~~dv~glL~LYeAs~l~~~gE~iLdea~~ft~~~L~~~~~~--------~~~~l~~~V~~aL~~P~~~~ 219 (574)
+|+|++++ .+|++||||||||||+++|||+|||||++||++||++.+.. ++++|++||+|||++|||++
T Consensus 349 ~g~F~~~~~e~~~dv~g~L~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~d~~~~~~~L~~eV~~aL~~P~~~~ 428 (785)
T 3s9v_A 349 NGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKS 428 (785)
T ss_dssp TSCBCSSTTCCCCCHHHHHHHHHHHTSCCTTCHHHHHHHHHHHHHHHHHTTTCCTTCTTCSSSCHHHHHHHHHHSCGGGC
T ss_pred CCCeeeccccccccccccHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhCCccccC
Confidence 99999866 69999999999999999999999999999999999998753 46789999999999999999
Q ss_pred cchHHHhhhHHhhhcCCcc------------ccHHHHHHHhhchHHHHHhhHHHHHHHHHHHhHhcCcCCChhhhhhHhh
Q 008206 220 MPRLEARQYISIYEADNST------------RNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVE 287 (574)
Q Consensus 220 ~~rlear~yi~~Y~~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve 287 (574)
+||||||+||++|+++ +. +|++||||||||||+||++||+||++++||||++|+ .++||||||++|
T Consensus 429 l~RleaR~yI~~Y~~~-~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~ve 506 (785)
T 3s9v_A 429 MPRLEARSYIENYGPD-DVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGF-TDLNFTRERVTE 506 (785)
T ss_dssp CHHHHHHHHHHHCCTT-CCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-TSCSSSCCCHHH
T ss_pred chHHHHHHHHHHhccc-chhhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCC-CcCccHHHHHHH
Confidence 9999999999999988 65 499999999999999999999999999999999999 699999999999
Q ss_pred hhhhhhccccCCCcchhhHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHH
Q 008206 288 CYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFAL 367 (574)
Q Consensus 288 ~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~~~~~~~~rWD~~~~~~lpe~mk~~~~al 367 (574)
||||++|++|||+||.+|+++||+++|++++||+||+|||+||++.||+||+ |||++++++||+|||+||.+|
T Consensus 507 ~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~-------RWD~~~~~~Lpeymk~~f~aL 579 (785)
T 3s9v_A 507 IYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVK-------RWDLSLVDQMPQQMKICFVGF 579 (785)
T ss_dssp HHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHH-------HTSSSSGGGSCHHHHHHHHHH
T ss_pred HHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHH-------HcCchhhhcCChhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCcccc
Q 008206 368 LDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAIT 446 (574)
Q Consensus 368 ~~~~~ei~~~~~~-g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~ 446 (574)
+++++|++.++.+ ++. ++++|++++|++++++|++||+|+++||+||+||||+||++|+|+++++++++++||+. +|
T Consensus 580 ~~~~nei~~~~~~~~g~-~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~~G~~-lt 657 (785)
T 3s9v_A 580 YNTFNDIAKEGRERQGR-DVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEV-LT 657 (785)
T ss_dssp HHHHHHHHHHHHHHHTS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTCSSSC-CC
T ss_pred HHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHHcCCC-CC
Confidence 9999999998887 444 69999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHhhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchhhHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 008206 447 KRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQY-GVSEEEACNKIKGMVEIEWMNINEEIQDP 525 (574)
Q Consensus 447 ~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V~cyMke~-g~S~eeA~~~i~~~ie~~wk~ln~e~l~~ 525 (574)
+++++|+..+|+|+++++.|+||+|||+||++|++||+++|+|+|||||+ |+|+|+|+++++++|+++||+||++|+++
T Consensus 658 ~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~ 737 (785)
T 3s9v_A 658 DEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVNN 737 (785)
T ss_dssp HHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhcccccHHHHHHHHHHHHHhcccchhhHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999976679999999999999999999999999999999999999999 99999999999999999999999999998
Q ss_pred CCCChhHHHHHHHHhhhhccccccCCCCCCCCh-hHHHHHHhhhcccCC
Q 008206 526 NHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTG-KTKDRIASLLVDPLP 573 (574)
Q Consensus 526 ~~~p~~~~~~~lN~aR~~~~~Y~~~Dgyt~~~~-~~k~~i~~ll~~pi~ 573 (574)
+ +|++|+++++|+||++++||+++||||.|+. .||++|++||++||.
T Consensus 738 ~-~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 738 K-IPDIYKRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPVA 785 (785)
T ss_dssp C-CCHHHHHHHHHHHHHHHHHTCCCC----CHHHHHHHHHHHHHTSCCC
T ss_pred C-CCHHHHHHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHhcccCC
Confidence 8 9999999999999999999999999999965 699999999999983
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=4.3e-107 Score=915.81 Aligned_cols=454 Identities=24% Similarity=0.341 Sum_probs=391.2
Q ss_pred HHHHHHHHHHHHHHHhc-----cccCccCHHHHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhc-CCCCCCCCCCCCCch
Q 008206 49 EKRFETLKAEIEKLLVS-----NNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSH-VNGNCDVNYDHNNDL 122 (574)
Q Consensus 49 ~~~~~~lk~~vr~~l~~-----~~~~~~d~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~~-~~~~~~~~~~~~~Dl 122 (574)
.+..+-|+..|+++..+ .. |++++|++||+||||||+|||++||+++|+++|++| +++++++......||
T Consensus 220 ~~~l~YL~~~v~k~~g~VP~~yP~----d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~~~~~DL 295 (727)
T 3pya_A 220 SNCLEYLRNAVKRFNGGVPNVFPV----DLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDI 295 (727)
T ss_dssp HHHHHHHHHHHHHTTTCCCSSCCC----HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSSCSCCCH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCC----cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcCcccccCCCCCCH
Confidence 45567788888876542 24 799999999999999999999999999999999999 666544321114699
Q ss_pred HHHHHHHHHHHhcCceechhhhccccccccccccc---cccChHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHHHhhc
Q 008206 123 YIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAM---LTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH 199 (574)
Q Consensus 123 ~~~al~FRlLR~hGy~vS~dvf~~F~d~~g~F~~~---~~~dv~glL~LYeAs~l~~~gE~iLdea~~ft~~~L~~~~~~ 199 (574)
++|||+|||||||||+||||||++|+ ++|+|++. ..+|++|||+||||||+++|||+|||||++||++||++.+..
T Consensus 296 ~~tAL~FRLLRqhGy~VS~DvF~~Fk-~~G~F~~~~~e~~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~ 374 (727)
T 3pya_A 296 DDTAMAFRLLRQHGYQVSADVFKNFE-KEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKRER 374 (727)
T ss_dssp HHHHHHHHHHHHTTCCCCGGGGGGGE-ETTEECSSTTCCCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHhcc-CCCcccccccccccccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999 88999953 468999999999999999999999999999999999998752
Q ss_pred --------CCCchHHHHHHHccCCccCCcchHHHhhhHHhhhcCCcc-------------ccHHHHHHHhhchHHHHHhh
Q 008206 200 --------LSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNST-------------RNELILELAKLDFNLLQALH 258 (574)
Q Consensus 200 --------~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~-------------~n~~lLelAkldFn~~Q~~h 258 (574)
++++|++||+|||++|||+++||||||+||++|+++ ++ +|++||||||||||+||++|
T Consensus 375 ~~~~dkw~~~~~L~~~V~~aL~~P~~~~l~RleaR~yI~~Y~~~-~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~h 453 (727)
T 3pya_A 375 EELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGE-NDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQH 453 (727)
T ss_dssp TCCCCSSEECSCHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCGG-GCEEESSSEECCTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccccCCcHHHHHHHHhcCcHhcCChHHHHHHHHHHhccC-cchhhhhhhccccccccHHHHHHHHHhHHHHHHHh
Confidence 247899999999999999999999999999999986 54 69999999999999999999
Q ss_pred HHHHHHHHHHHhHhcCcCCChhhhhhHhhhhhhhhccccCCCcchhhHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHH
Q 008206 259 RIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAI 338 (574)
Q Consensus 259 q~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai 338 (574)
|+||++++||||++|| .++||||||++|||||++|++|||+||.+|+++||++++++++||+||+|| ||++.||+||
T Consensus 454 q~EL~~lsrWwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yG--eEl~~ft~av 530 (727)
T 3pya_A 454 QLEWDIFQKWYEENRL-SEWGVRRSELLECYYLAAATIFESERSHERMVWAKSSVLVKAISSSFGESS--DSRRSFSDQF 530 (727)
T ss_dssp HHHHHHHHHHHHHTTG-GGGTCCHHHHHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHH
T ss_pred HHHHhhhheeHHhcCc-ccCCchhhHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHH
Confidence 9999999999999999 579999999999999999999999999999999999999999999999999 9999999999
Q ss_pred Hhhhhhccccchh---------hhcc---Cchh--HHHHHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHH
Q 008206 339 ESIHIVFGRWEVV---------AANE---LPKY--MQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFV 403 (574)
Q Consensus 339 ~~~~~~~~rWD~~---------~~~~---lpe~--mk~~~~al~~~~~ei~~~~~~-g~~~~~~~~~k~~~~~~~~a~l~ 403 (574)
+ |||.+ +++. +|+| ||+||.+|++++||++.++.+ +|. ++.+|++++|.++++++++
T Consensus 531 ~-------rwd~~~~~~~~~~~~~~~~~~~p~~~~mk~~f~aL~~t~nei~~~~~k~qg~-~v~~~l~~~W~~~l~s~~~ 602 (727)
T 3pya_A 531 H-------EYIANARRSDHHFNDRNMRLDRPGSVQASRLAGVLIGTLNQMSFDLFMSHGR-DVNNLLYLSWGDWMEKWKL 602 (727)
T ss_dssp H-------HHC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHH
T ss_pred H-------hcccccccccccccchhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHH
Confidence 9 99974 3333 3877 999999999999999998888 443 6999999999999999999
Q ss_pred HHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHhhhcchhHHHHHHHHHHHHhcCCcchhhhhhcC
Q 008206 404 EAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERG 483 (574)
Q Consensus 404 EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG 483 (574)
|++ + +| |. +++.++.+..|.. +++ ++.. +.+..|.++++.||||+||+.+|++|+
T Consensus 603 Ea~-~--------~E---------Ae-llv~~I~l~sG~~-l~e-~l~~-~ey~~L~~ltn~icrllndl~~~~~E~--- 657 (727)
T 3pya_A 603 YGD-E--------GE---------GE-LMVKMIILMKNND-LTN-FFTH-THFVRLAEIINRICLPRQYLKARRNDE--- 657 (727)
T ss_dssp HSS-C--------CH---------HH-HHHHHHHHHSSSC-GGG-GGSS-HHHHHHHHHHHHHSCCCC------CHH---
T ss_pred hcc-c--------cc---------ee-eeeeeeecCCCcc-hHh-hccC-hhHHHHHHHHHHHhHHHhHHHHHHHHH---
Confidence 987 2 33 22 3333333334777 888 6655 666779999999999999999999977
Q ss_pred CCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCChhHHHHHHHHhhhhccccccCCCCCCCChhHH
Q 008206 484 DAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPN--HPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTK 561 (574)
Q Consensus 484 ~~~n~V~cyMke~g~S~eeA~~~i~~~ie~~wk~ln~e~l~~~--~~p~~~~~~~lN~aR~~~~~Y~~~Dgyt~~~~~~k 561 (574)
++++.+.|+..|+++++.+++++ .+|++| |+.+|++.||.. ||++|+ |+
T Consensus 658 --------------------~~~~~~~IE~~mqEL~~lVl~~~~~~ip~~~-----tf~~V~ksFYy~--ay~~p~--i~ 708 (727)
T 3pya_A 658 --------------------KEKTIKSMEKEMGKMVELALSESDTFRDVSI-----TFLDVAKAFYYF--ALCGDH--LQ 708 (727)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHSCCTTTHHHHH-----HHHHHHHHHHHH--HHHTTS--CH
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHhccCCCCCCCcc-----cHHHHHHHHHhh--hcCCHH--HH
Confidence 55789999999999999999754 699999 889999999986 999984 99
Q ss_pred HHHHhhhcccCC
Q 008206 562 DRIASLLVDPLP 573 (574)
Q Consensus 562 ~~i~~ll~~pi~ 573 (574)
.+|.++|++||-
T Consensus 709 ~hI~kVl~~~~~ 720 (727)
T 3pya_A 709 THISKVLFQKVG 720 (727)
T ss_dssp HHHHHHHHSCCC
T ss_pred HHHHHHHcCccc
Confidence 999999999984
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=1.2e-50 Score=423.84 Aligned_cols=251 Identities=13% Similarity=0.092 Sum_probs=228.1
Q ss_pred HHhhHHHHHHHH-HHHhHhcCcCCChhhhhhHhhhhhhhhccccCCCcchhhH-HHHHHHHHHHhhhhhhccc--CCHHH
Q 008206 255 QALHRIELSEIS-RWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRK-FMTKIIAIASVIDDIYDVY--GTLEE 330 (574)
Q Consensus 255 Q~~hq~El~~ls-rWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl-~laK~~~l~~viDD~fD~y--gt~eE 330 (574)
+..|.+|++..+ +||+++|+.+ .||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||.+ ||++|
T Consensus 15 ~~p~~~e~~~~~~~W~~~~~l~~-~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~~ee 93 (337)
T 1ps1_A 15 QSPDHARAEAEQLAWPRSLGLIR-SDAAAERHLRGGYADLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENPED 93 (337)
T ss_dssp CCTTHHHHHHSTTHHHHHTTSCC-SHHHHHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHhCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCCHHH
Confidence 456777887766 6999999964 59999999999999999999999999999 9999999999999999998 69999
Q ss_pred HHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhc
Q 008206 331 LKLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHA 410 (574)
Q Consensus 331 l~~ft~ai~~~~~~~~rWD~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~ 410 (574)
++.|++++. +|+.+ .+|+++++++.++++++++++..+.+ .+..++++.|++|++++++||+|+.+
T Consensus 94 ~~~~~~~l~-------~~~~~---~~p~~~~~~~~~l~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~Ea~~~~~ 159 (337)
T 1ps1_A 94 TKQLTDQVA-------AALDG---PLPDTAPPIAHGFADIWRRTCEGMTP----AWCARSARHWRNYFDGYVDEAESRFW 159 (337)
T ss_dssp HHHHHHHHH-------GGGTS---CCCTTSCHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHH-------HHcCC---CCCCCCChHHHHHHHHHHHHhccCCH----HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999 99864 47999999999999999999765432 57899999999999999999999999
Q ss_pred CCCC-ChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHhhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchh
Q 008206 411 KYVP-TFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSV 489 (574)
Q Consensus 411 g~vP-T~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V 489 (574)
|++| |++|||++|++|+|+++++++++++||.. +|+++++. +..++|+++++.++||+|||+||++|+++|+++|+|
T Consensus 160 ~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~-l~~~~~~~-p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~n~V 237 (337)
T 1ps1_A 160 NAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFE-VPHRVFDS-AVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMV 237 (337)
T ss_dssp -----CHHHHHHHHHHHTCHHHHHHHHHHHHTCC-CCHHHHTS-HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSHH
T ss_pred CCCCCCHHHHHHHcccccchhhHHHHHHHHcCCC-CCHHHHhC-hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcchHH
Confidence 9999 99999999999999999999999999999 99998876 566689999999999999999999999999999999
Q ss_pred hHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 008206 490 ECYVQQYGVSEEEACNKIKGMVEIEWMNINEEI 522 (574)
Q Consensus 490 ~cyMke~g~S~eeA~~~i~~~ie~~wk~ln~e~ 522 (574)
.|||+++|+|+|+|++++.++|+++||++|++.
T Consensus 238 ~~~m~~~g~s~eeA~~~v~~~i~~~~~~~~~~~ 270 (337)
T 1ps1_A 238 MILRREHGWSKSRSVSHMQNEVRARLEQYLLLE 270 (337)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=1.2e-48 Score=401.83 Aligned_cols=242 Identities=12% Similarity=0.085 Sum_probs=222.7
Q ss_pred hhHHHHHHHH-HHHhHhcCcCCChhhhhhHhhhhhhhhccccCCCcchhhH-HHHHHHHHHHhhhhhhcccCCHHHHHHH
Q 008206 257 LHRIELSEIS-RWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRK-FMTKIIAIASVIDDIYDVYGTLEELKLF 334 (574)
Q Consensus 257 ~hq~El~~ls-rWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl-~laK~~~l~~viDD~fD~ygt~eEl~~f 334 (574)
-|.+|+++.+ +||+++|+. +.||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. |+.+|++.|
T Consensus 13 P~~~~~~~~~~~W~~~~~l~-~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~~~ 90 (300)
T 1di1_A 13 PRVKEVQDEVDGYFLENWKF-PSFKAVRTFLDAKFSEVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGEAY 90 (300)
T ss_dssp TTHHHHHHHHHHHHHHHSCC-SSHHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHhcCcchhhhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHHH
Confidence 4677888777 577999996 579999999999999999999999999999 999999999999999999 789999999
Q ss_pred HHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 008206 335 THAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVP 414 (574)
Q Consensus 335 t~ai~~~~~~~~rWD~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~g~vP 414 (574)
++++. +|+.+ +.+|++|+++++++++++++++..+. .+.++.|+.++++|+ |++|+..|++|
T Consensus 91 ~~~~~-------~~~~~--~~lp~~~~~~~~~l~d~~~~~~~~~~--------~~~~~~~~~~~~~~~-ea~~~~~~~~P 152 (300)
T 1di1_A 91 NNRLI-------PISRG--DVLPDRTKPEEFILYDLWESMRAHDA--------ELANEVLEPTFVFMR-AQTDRARLSIH 152 (300)
T ss_dssp HHHHH-------HHHHT--SSCCCTTCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH-TTTCCCCCCCC
T ss_pred HHHHH-------HHccC--CCCCCCccHHHHHHHHHHHHHHhhCh--------HHHHHHHHHHHHHHH-HHhccccCCCC
Confidence 99999 99875 47899999999999999999987641 345677999999997 89999999999
Q ss_pred ChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHhhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCC--------CC
Q 008206 415 TFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGD--------AP 486 (574)
Q Consensus 415 T~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~--------~~ 486 (574)
|++|||++|++|+|+++++++++++||.. +|+++++ ..++|+++++.++||+|||+||++|+++|+ ++
T Consensus 153 s~eeYl~~r~~s~g~~~~~~~~~~~~g~~-l~~e~~~---~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~ 228 (300)
T 1di1_A 153 ELGHYLEYREKDVGKALLSALMRFSMGLR-LSADELQ---DMKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLC 228 (300)
T ss_dssp SHHHHHHHHHTCHHHHHHHHHHHHHHTCC-CCHHHHH---TTHHHHHHHHHHHHHHHHHHHTTTTCCC----------CC
T ss_pred CHHHHHHHHhhhccHHHHHHHHHHHcCCC-CCHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccc
Confidence 99999999999999999999999999999 9999998 469999999999999999999999999999 78
Q ss_pred chhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 008206 487 SSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEI 522 (574)
Q Consensus 487 n~V~cyMke~g~S~eeA~~~i~~~ie~~wk~ln~e~ 522 (574)
|+|.|||+++|+|+|+|++++.++|+++||++|+..
T Consensus 229 n~V~~~m~~~g~s~eeA~~~~~~~i~~~~~~~~~~~ 264 (300)
T 1di1_A 229 SAVKVLAEESKLGIPATKRVLWSMTREWETVHDEIV 264 (300)
T ss_dssp CHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999865
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=3.5e-47 Score=394.80 Aligned_cols=245 Identities=16% Similarity=0.120 Sum_probs=220.9
Q ss_pred HHHhhHHHHHHHH-HHHhHhcCcCCChhhhhhHhhhhhhhhccccCCCcchhhH-HHHHHHHHHHhhhhhhcccCCHHHH
Q 008206 254 LQALHRIELSEIS-RWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRK-FMTKIIAIASVIDDIYDVYGTLEEL 331 (574)
Q Consensus 254 ~Q~~hq~El~~ls-rWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl-~laK~~~l~~viDD~fD~ygt~eEl 331 (574)
-...|.+|+++.+ +||+++|+..+ ||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. |+++|+
T Consensus 24 ~~~p~~~e~~~~~~~W~~~~~l~~~-~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~~~e~ 101 (320)
T 3bny_A 24 LCHPLVEEVSKEVDGYFLQHWNFPN-EKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MSFEEG 101 (320)
T ss_dssp CCCTTHHHHHHHHHHHHHHHSCCSS-HHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SCHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHcCCCCC-hHHHHHHHhcCchhhHhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CChhhH
Confidence 3456778888777 57799999755 9999999999999999999999999999 899999999999999999 889999
Q ss_pred HHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhcC
Q 008206 332 KLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAK 411 (574)
Q Consensus 332 ~~ft~ai~~~~~~~~rWD~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~g 411 (574)
+.|++++. +|+.+ +.+|++|++++.+++++++++++.+ + .+.++.|+.++ ++++|++|+.+|
T Consensus 102 ~~~~~~l~-------~~~~~--~~~p~~~~~~~~al~d~~~e~~~~~-~-------~~~~~~~~~~~-~~~~e~~~~~~~ 163 (320)
T 3bny_A 102 SAYNEKLI-------PISRG--DVLPDRSIPVEYIIYDLWESMRAHD-R-------EMADEILEPVF-LFMRAQTDRTRA 163 (320)
T ss_dssp HHHHHHHH-------HHHHT--SSCCCTTSHHHHHHHHHHHHHHHHH-H-------HHHHHTHHHHH-HHHHHTSCCCCC
T ss_pred HHHHHHHH-------HHhcC--CCCCCCcCHHHHHHHHHHHHHHhhC-H-------HHHHHHHHHHH-HHHHHHhhhccC
Confidence 99999999 99875 4689999999999999999998764 2 23455566677 599999999999
Q ss_pred CCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHhhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCC-------
Q 008206 412 YVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGD------- 484 (574)
Q Consensus 412 ~vPT~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~------- 484 (574)
++||++|||++|++|+|+++++++++++||.. +|+++++ ..|+|+++++.++||+|||+||++|+++|+
T Consensus 164 ~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~-l~~e~~~---~~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~ 239 (320)
T 3bny_A 164 RPMGLGGYLEYRERDVGKELLAALMRFSMGLK-LSPSELQ---RVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGG 239 (320)
T ss_dssp CCCCHHHHHHHHHTCHHHHHHHHHHHHHHTCC-CCHHHHH---HTHHHHHHHHHHHHHHHHHHHHHHHCC----------
T ss_pred CCCCHHHHHHHhhhcccHHHHHHHHHHHcCCC-CCHHHHH---HHHHHHHHHHHHHHHhcccchhHHHHHhhcccccccc
Confidence 99999999999999999999999999999999 9999998 479999999999999999999999999998
Q ss_pred -CCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 008206 485 -APSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEI 522 (574)
Q Consensus 485 -~~n~V~cyMke~g~S~eeA~~~i~~~ie~~wk~ln~e~ 522 (574)
++|+|.|||+++|+|+|+|++++.++|++.|+++|+..
T Consensus 240 ~~~N~V~~~m~~~g~s~eeA~~~~~~~i~~~~~~~~~l~ 278 (320)
T 3bny_A 240 ILCTSVQILAQEADVTAEAAKRVLFVMCREWELRHQLLV 278 (320)
T ss_dssp -CCSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999855
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=6.6e-46 Score=395.59 Aligned_cols=242 Identities=11% Similarity=-0.028 Sum_probs=222.8
Q ss_pred HHHHHhHhcCcCCChhhhhhHhhhhhhhhccccCCCcchhhH-HHHHHHHHHHhhhhhhcc--cC-CHHHHHHHHHHHHh
Q 008206 265 ISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRK-FMTKIIAIASVIDDIYDV--YG-TLEELKLFTHAIES 340 (574)
Q Consensus 265 lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl-~laK~~~l~~viDD~fD~--yg-t~eEl~~ft~ai~~ 340 (574)
+.+||+++|+. ..+++|+|+++++||.++++++|+++.+|+ ++||+++|+|++||+||. +| ++++++.|++++.
T Consensus 66 ~~~W~~~~gl~-~~~~~r~r~~~~~~~~laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l~- 143 (382)
T 3kb9_A 66 TRTWLLEKRLM-PADKVEEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLH- 143 (382)
T ss_dssp HHHHHHHTTSS-CHHHHHHHHHHHCHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHcCCC-CCHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHH-
Confidence 45799999995 347999999999999999999999999999 999999999999999997 66 9999999999998
Q ss_pred hhhhccccchhhhccCchhHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHH
Q 008206 341 IHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECV 420 (574)
Q Consensus 341 ~~~~~~rWD~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl 420 (574)
++- .....+|++++++++++.+++++++..+.+ .+..+++++|++++++|++||+|+.+|++||++|||
T Consensus 144 ------~~l-~~~~~~p~~~~p~~~al~dl~~~~~~~~~~----~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl 212 (382)
T 3kb9_A 144 ------TAL-DSPGDHLHHEDTLVAGFADSVRRLYAFLPA----TWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYL 212 (382)
T ss_dssp ------HHH-HSCGGGTTCSSHHHHHHHHHHHHHTTSSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred ------HHh-cCCCCCCCCCChHHHHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 542 122336889999999999999999754433 478999999999999999999999999999999999
Q ss_pred hhhccccchhhHHHHHHHhcCCccccHHHHhhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchhhHHHHhcCCCH
Q 008206 421 ENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSE 500 (574)
Q Consensus 421 ~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V~cyMke~g~S~ 500 (574)
++|++|+|+.++++++++++|.. +|++++++ +..++|+++++.++||+|||+||++|+++|+++|+|.|||+++|+|+
T Consensus 213 ~~r~~s~g~~~~~~l~~~~~g~~-l~~~~~~~-p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s~ 290 (382)
T 3kb9_A 213 ELRRLTFAHWIWTDLLEPSSGCE-LPDAVRKH-PAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTL 290 (382)
T ss_dssp HHHHHHTTHHHHHHHHHHHHTCC-CCHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCCH
T ss_pred HHHhhhcCHHHHHHHHHHHcCCC-CCHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCCCCH
Confidence 99999999999999999999999 99999988 67788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 008206 501 EEACNKIKGMVEIEWMNINEE 521 (574)
Q Consensus 501 eeA~~~i~~~ie~~wk~ln~e 521 (574)
|+|++++.++|+++||++|+.
T Consensus 291 eeA~~~v~~~i~~~~k~~~~~ 311 (382)
T 3kb9_A 291 EEAIGEVRRRVEECITEFLAV 311 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999984
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=100.00 E-value=3.5e-33 Score=301.14 Aligned_cols=246 Identities=13% Similarity=0.062 Sum_probs=188.2
Q ss_pred HHHH-HHHHHhHhcCcCCChhhhhhHhhhhhhhhccccCCCc-chhhH-HHHHHHHHHHhhhhh-hcccC-CHHH-HHHH
Q 008206 261 ELSE-ISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKY-STTRK-FMTKIIAIASVIDDI-YDVYG-TLEE-LKLF 334 (574)
Q Consensus 261 El~~-lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~-s~~Rl-~laK~~~l~~viDD~-fD~yg-t~eE-l~~f 334 (574)
|++. +..|..++++... +..|+++..+-|-.++.+..|.. +..|+ +++||++|+|++||. +|..| +.+. ...+
T Consensus 130 ev~~~~~~W~~~~~~l~~-~~~~~~~~~~~~~llaa~~yP~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~l 208 (433)
T 3v1v_A 130 EVSRRIKRWAEDEVQLYP-EEWEGQFDGFSVGRYMVGCHPDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGGRL 208 (433)
T ss_dssp HHHHHHHHHHHHTSCCCC-----CCSCHHHHHHHHHHHCTTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTHHHHH
T ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHHHH
Confidence 4443 4469999876422 35577787775555544555999 79998 889999999999999 59855 3222 1122
Q ss_pred HH---HHHhhhhhccccchhhhccCch-----hHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHH
Q 008206 335 TH---AIESIHIVFGRWEVVAANELPK-----YMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAK 406 (574)
Q Consensus 335 t~---ai~~~~~~~~rWD~~~~~~lpe-----~mk~~~~al~~~~~ei~~~~~~g~~~~~~~~~k~~~~~~~~a~l~EAk 406 (574)
.. ++. .... ..+.-|. .-.++..+++++++++...+.+ .+.+++++.|++|+++|++||+
T Consensus 209 ~~a~~~~d-------~l~~-~~~g~p~~~~~~~~dp~~~al~d~~~~l~~~a~~----~q~~r~~~~~~~~~~a~l~EA~ 276 (433)
T 3v1v_A 209 LLAHTAID-------HFHS-TAEYTPTWQASLAADAPRRAYDSAMGYFVRAATP----SQSDRYRHDMARLHLGYLAEGA 276 (433)
T ss_dssp HHHHTTTS-------CCCC-CTTTHHHHHHHTTSSHHHHHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-------hhhc-ccCCCCccccccCCchHHHHHHHHHHHHHhhcCH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 22 111 1110 0000000 0124578999999999876554 5799999999999999999999
Q ss_pred HhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHhhhcchhHHHHHHHHHHHHhcCCcchhhhhhcC-CC
Q 008206 407 WFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERG-DA 485 (574)
Q Consensus 407 W~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG-~~ 485 (574)
|+.+|++||++|||++|++| |+.++++++.+++|.. +|++++++ +...+|+++++.++||+|||+||+||+++| ++
T Consensus 277 W~~~g~vPsleEYl~~R~~s-g~~p~~~l~e~~~g~~-lp~~v~~~-p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~ 353 (433)
T 3v1v_A 277 WAQTGHVPEVWEYLAMRQFN-NFRPCPTITDTVGGYE-LPADLHAR-PDMQRVIALAGNATTIVNDLYSYTKELNSPGRH 353 (433)
T ss_dssp HHHHTCCCCHHHHHHHHHHS-SSTTTGGGHHHHHTCC-CCHHHHTS-HHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCC
T ss_pred HHhcCCCCCHHHHHHHHHHH-hHHHHHHHHHHHcCCC-CCHHHHhC-chHHHHHHHHHHHHHHhchHHHHHHHHhcCCCC
Confidence 99999999999999999999 6677777788889998 99999887 566788999999999999999999999995 78
Q ss_pred CchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 008206 486 PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEI 522 (574)
Q Consensus 486 ~n~V~cyMke~g~S~eeA~~~i~~~ie~~wk~ln~e~ 522 (574)
+|+|.|||+++|+|+|+|++++.++|+++++++.+..
T Consensus 354 ~N~V~~~mke~g~S~eeA~~~v~~~i~~~~~~F~~~~ 390 (433)
T 3v1v_A 354 LNLPVVIAEREQLCERDAYLKAVEVHNELQHSFEAAA 390 (433)
T ss_dssp CCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888653
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.75 E-value=6.4e-18 Score=178.83 Aligned_cols=226 Identities=12% Similarity=0.035 Sum_probs=169.3
Q ss_pred HHHHHHhHhc------------CcCCChhhhhhHhhhhhhhhccccCCCcchhhH-HHHHHHHHHHhhhhhhcccCCHHH
Q 008206 264 EISRWWKDID------------FATKLPFARDRLVECYFWILGVYFEPKYSTTRK-FMTKIIAIASVIDDIYDVYGTLEE 330 (574)
Q Consensus 264 ~lsrWwk~~~------------l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl-~laK~~~l~~viDD~fD~ygt~eE 330 (574)
+..+|..+.| +. .-|-..++++.+=.|.++..| |..+...+ .++++.+|+|++||++|..+ ++
T Consensus 34 ~~l~w~~~~~~~~~~~~~~~~~l~-~~~~~l~~~~~t~~~laar~Y-P~a~~e~l~liad~~~~~F~lDD~~d~~~--~~ 109 (374)
T 1yyq_A 34 ENLHYAYNKAAHHFAQPRQQQLLK-VDPKRLQASLQTIVGMVVYSW-AKVSKECMADLSIHYTYTLVLDDSKDDPY--PT 109 (374)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHSC-CCHHHHHHHHHHHHHHHHHHS-TTSCHHHHHHHHHHHHHHHHHTTCCSCSH--HH
T ss_pred HHHHHHHHhccchhcccccccccc-cCHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHHhhcccccCcH--HH
Confidence 4447888888 42 234566677777677666555 99999988 88999999999999999654 67
Q ss_pred HHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhc
Q 008206 331 LKLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHA 410 (574)
Q Consensus 331 l~~ft~ai~~~~~~~~rWD~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~ 410 (574)
+..|.+.+. . .. .|+ .++..++.+.+.++...+ ++ .+..++.++|.+++.++..|+.. .
T Consensus 110 l~~~~~~ll-------~--G~----~~~--~Pl~~al~dl~~rl~~~~---~p-~~~~rf~~s~~~~~~a~~~Ea~n--~ 168 (374)
T 1yyq_A 110 MVNYFDDLQ-------A--GR----EQA--HPWWALVNEHFPNVLRHF---GP-FCSLNLIRSTLDFFEGCWIEQYN--F 168 (374)
T ss_dssp HTTHHHHHH-------H--TC----CCS--SHHHHHHHHHHHHHHTTS---CH-HHHHHHHHHHHHHHHHHHHHTTC--C
T ss_pred HHHHHHHHh-------c--CC----CCC--ChHHHHHHHHHHHHHHhc---CH-HHHHHHHHHHHHHHHHHHHHHhc--c
Confidence 777777765 2 11 111 256667777776664432 22 78999999999999999999873 6
Q ss_pred CCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHh-h--hcchhHHHHHHHHHHHHhcCCcchhhhhhc-CCCC
Q 008206 411 KYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALD-W--AISVPKIIRSSSLIARLDDDVHTYKVEQER-GDAP 486 (574)
Q Consensus 411 g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e-~--~~~~p~i~~~~~~i~RL~NDI~S~~~E~~r-G~~~ 486 (574)
+..|+.++|...++.++|+.-.... + . +|...+. . .+.+...+.....++.|+|||.||.||... |+.+
T Consensus 169 ~~~p~~~~Y~~~rR~~sG~~E~~~~--~----~-~P~~~~~e~~~~~~~~~~i~am~~~i~~~NDIlSf~KE~~~~Gd~~ 241 (374)
T 1yyq_A 169 GGFPGSHDYPQFLRRMNGLGHCVGA--S----L-WPKEQFNERSLFLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQI 241 (374)
T ss_dssp CCCTTCTTHHHHHHHHHHCHHHHHH--T----T-CCTTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCC
T ss_pred CCCCCHHHHHHHHHhhccHHHHHHH--h----h-ccccccchhhcchhHHHHHHHHHHHHHhhhhhhccchhhhccCCcc
Confidence 7789999999988888887533322 2 2 3433331 1 122345577777799999999999999984 9999
Q ss_pred chhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh
Q 008206 487 SSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEE 521 (574)
Q Consensus 487 n~V~cyMke~g~S~eeA~~~i~~~ie~~wk~ln~e 521 (574)
|.|..++.++|+|.++|++++..++..+..++-+.
T Consensus 242 NlV~vl~~~~g~S~~eAl~~v~~~~~~~~~r~~~~ 276 (374)
T 1yyq_A 242 SLVKNYVVSDEISLHEALEKLTQDTLHSSKQMVAV 276 (374)
T ss_dssp CHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhehhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888653
No 17
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=97.21 E-value=9.4e-05 Score=85.21 Aligned_cols=52 Identities=29% Similarity=0.557 Sum_probs=28.5
Q ss_pred cCccccccCCCCCCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHHHHHh
Q 008206 12 ESTKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLV 64 (574)
Q Consensus 12 ~~~~~~~~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~~lk~~vr~~l~ 64 (574)
++....+.||++||+||+|+++||++.. .++..+.+.+++++|+++||+||.
T Consensus 17 ~~~~~~~~Rrsany~Ps~W~~~~i~sl~-~~~~~~~~~~~~~~Lie~VK~~l~ 68 (817)
T 3sdr_A 17 LSSTSGLIRRTANPHPNVWGYDLVHSLK-SPYIDSSYRERAEVLVSEIKAMLN 68 (817)
T ss_dssp ------------------CHHHHHHTCC-CGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCccCCCCCCCCCCCCCCeeeccC-CcccchhHHHHHHHHHHHHHHHhc
Confidence 3333445799999999999999999643 334567889999999999999997
No 18
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=90.48 E-value=12 Score=37.42 Aligned_cols=194 Identities=19% Similarity=0.148 Sum_probs=103.0
Q ss_pred hhhHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHHHhhhhhccccchhhh--ccCchhHHHHHHHHHHHHHHHHHHHhc
Q 008206 303 TTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIESIHIVFGRWEVVAA--NELPKYMQVCYFALLDVVKEMEDKLVN 380 (574)
Q Consensus 303 ~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~~~~~~~~rWD~~~~--~~lpe~mk~~~~al~~~~~ei~~~~~~ 380 (574)
..|-.+.-+-.+.-.+||+=|......+|+.+-+.++. -.+.... ...|+ .++..+|.+++.+.
T Consensus 38 ~~R~av~alYaf~R~~Ddi~D~~~~~~~L~~w~~~l~~------~~~g~~~~~~~~~~--~pv~~al~~~~~~~------ 103 (293)
T 3acx_A 38 DQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQS------IEKYPYEYHHFQSD--RRIMMALQHVAQHK------ 103 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGTSSTHHHHHHHHHHHH------HHHCTTSCCCCSSC--HHHHHHHHHHHHHS------
T ss_pred HHHHHHHHHHHHHHHHhhHhccCCCHHHHHHHHHHHHH------HhCCCCcccCCCCC--CHHHHHHHHHHHHh------
Confidence 45666667778888899999976654446666666651 0011100 00022 46777887776554
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHhhhcchhHHH
Q 008206 381 KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKII 460 (574)
Q Consensus 381 g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~ 460 (574)
+. . ++.+.+++.++-. +......+|++|+......+.|.-...++-.+|..+ .++..+.. ..+-
T Consensus 104 -~l--~----~~~~~~li~g~~~---Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g~~~---~~~~~~~A---~~lG 167 (293)
T 3acx_A 104 -NI--A----FQSFYNLIDTVYK---DQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHE---THQTYDVA---RRLG 167 (293)
T ss_dssp -CC--C----HHHHHHHHHHHHH---HTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHCSSC---CHHHHHHH---HHHH
T ss_pred -CC--C----HHHHHHHHHHHHH---HcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCC---cHHHHHHH---HHHH
Confidence 11 1 2345666666643 334456789999999888888776666655554322 12222221 1122
Q ss_pred HHHHHHHHHhcCCcchhhhhhcCCC--CchhhHHHHhcCCCHHHH---------HHHHHHHHHHHHHHHHHhhcCCCCCC
Q 008206 461 RSSSLIARLDDDVHTYKVEQERGDA--PSSVECYVQQYGVSEEEA---------CNKIKGMVEIEWMNINEEIQDPNHPP 529 (574)
Q Consensus 461 ~~~~~i~RL~NDI~S~~~E~~rG~~--~n~V~cyMke~g~S~eeA---------~~~i~~~ie~~wk~ln~e~l~~~~~p 529 (574)
.+...+. ++-|+. ....+|-+ +.- .|.++|+|.++- .+-+..++..+..-+.+..--...+|
T Consensus 168 ~AlQltN-ilRDv~---eD~~~gR~YLP~d---~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a~~~~~~lp 240 (293)
T 3acx_A 168 ESLQLIN-ILRDVG---EDFENERIYFSKQ---RLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFS 240 (293)
T ss_dssp HHHHHHH-HHHCHH---HHHHTTCCCSCHH---HHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGGSC
T ss_pred HHHHHHH-HHHHHH---HHHhCCcEEeCHH---HHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCC
Confidence 2222111 233443 33445644 332 467889998762 23455666666655554322223456
Q ss_pred hhHH
Q 008206 530 LQWL 533 (574)
Q Consensus 530 ~~~~ 533 (574)
....
T Consensus 241 ~~~r 244 (293)
T 3acx_A 241 IEAQ 244 (293)
T ss_dssp TTHH
T ss_pred HHHH
Confidence 5443
No 19
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=85.24 E-value=32 Score=34.30 Aligned_cols=187 Identities=13% Similarity=0.136 Sum_probs=95.6
Q ss_pred hhHHHHHHHHHHHhhhhhhcccC-C-HHHHHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHHHHHhcC
Q 008206 304 TRKFMTKIIAIASVIDDIYDVYG-T-LEELKLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNK 381 (574)
Q Consensus 304 ~Rl~laK~~~l~~viDD~fD~yg-t-~eEl~~ft~ai~~~~~~~~rWD~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~g 381 (574)
.|-.+.-+-.+.=.+||+-|... . ...|+.+-+.+. .. ...-|. .+++.+|.+++.+..
T Consensus 40 ~R~~~~alYaf~R~~Ddi~D~~~~~~~~~L~~~~~~l~-------~~----~~g~~~--~pv~~al~~~~~~~~------ 100 (294)
T 4hd1_A 40 LRPHFYSVYAFCRGVDDLGDEFAGDRMAALDAYEEELR-------RA----FAGEAT--TPAFRALQFTIATCN------ 100 (294)
T ss_dssp THHHHHHHHHHHHHHHHTSTTCCSCHHHHHHHHHHHHH-------HH----HHTCCC--SHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH-------HH----hcCCCC--CHHHHHHHHHHHHcC------
Confidence 45545566677778999999643 2 344555555554 11 011122 367888887776651
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHhhhcchhHHHH
Q 008206 382 EPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIR 461 (574)
Q Consensus 382 ~~~~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~ 461 (574)
- . ++.+.+++.++.... .....+|++|+......+.|.--.+.+-.+|. . +++.... ..
T Consensus 101 l---~----~~~~~~li~g~~~Dl---~~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~g~--~--~~~~~~~-------A~ 159 (294)
T 4hd1_A 101 L---P----MEPFLRLIEANRRDQ---RKHTYDTWEDLRDYCRYSADPVGRLVLGIFGC--L--DDERARL-------SD 159 (294)
T ss_dssp C---C----SHHHHHHHHHHHHHH---HCSBCCSHHHHHHHHHHHTHHHHHHHHHHTTC--C--SHHHHHH-------HH
T ss_pred C---C----HHHHHHHHHHHHhcc---ccCCCCCHHHHHHHHHhccchHHHHHHHHhCC--C--CHHHHHH-------HH
Confidence 1 1 123455666765433 23457899988888777777655555444433 2 2333222 11
Q ss_pred HHHHHHHHhcCCcchhhhhhcCCC--CchhhHHHHhcCCCHHHH---------HHHHHHHHHHHHHHHHHhhcCCCCCCh
Q 008206 462 SSSLIARLDDDVHTYKVEQERGDA--PSSVECYVQQYGVSEEEA---------CNKIKGMVEIEWMNINEEIQDPNHPPL 530 (574)
Q Consensus 462 ~~~~i~RL~NDI~S~~~E~~rG~~--~n~V~cyMke~g~S~eeA---------~~~i~~~ie~~wk~ln~e~l~~~~~p~ 530 (574)
..+...-|.|=+.......++|-+ +. -.|.++|+|.++- ..-+..+++.+..-+.+..--...+|.
T Consensus 160 ~lG~AlQltNilRDv~eD~~~gR~YlP~---~~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~ 236 (294)
T 4hd1_A 160 ATCTALQVANHMQDIDRDLALGRIYVPR---ADLEQFGATLDDIRARRATDGVRRCIALEVDRAQALFDEGRRLESLVPP 236 (294)
T ss_dssp HHHHHHHHHHHHHTHHHHHHTTCBCSCH---HHHHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSSCH
T ss_pred HHHHHHHHHHHHHhchhhhccCceeCCH---HHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 222222333322222334455543 43 2477899998752 223444444444333332221245776
Q ss_pred hHH
Q 008206 531 QWL 533 (574)
Q Consensus 531 ~~~ 533 (574)
.+.
T Consensus 237 ~~r 239 (294)
T 4hd1_A 237 RLA 239 (294)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 20
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=79.14 E-value=12 Score=38.76 Aligned_cols=85 Identities=13% Similarity=0.097 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhc--CCccccHHHHhhhcchhHHHHHH
Q 008206 386 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL--EDMAITKRALDWAISVPKIIRSS 463 (574)
Q Consensus 386 ~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~m--g~~~l~~e~~e~~~~~p~i~~~~ 463 (574)
.+..+.+++..++.+-..+..|.... ||.++|++.-..-+|..+..+ ..+|. +. .+++..+. ...+-+..
T Consensus 161 ~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a-~~lga~lag--a~~~~~~~---l~~~g~~l 232 (360)
T 3lmd_A 161 TVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASA-GYLGAMHAG--AAPEHIDA---LKNFGAAV 232 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHH-HHHHHHHTT--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHH-HHHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 56778888999999999999997655 999999988665555443322 22221 22 34444433 35677888
Q ss_pred HHHHHHhcCCcchhh
Q 008206 464 SLIARLDDDVHTYKV 478 (574)
Q Consensus 464 ~~i~RL~NDI~S~~~ 478 (574)
++..-+.||+..+.-
T Consensus 233 G~aFQI~DDilD~~~ 247 (360)
T 3lmd_A 233 GMIFQIVDDIIDIFS 247 (360)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccC
Confidence 888899999987753
No 21
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=77.07 E-value=14 Score=37.12 Aligned_cols=142 Identities=7% Similarity=-0.033 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhc--CCccccHHHHhhhcchhHHHHHH
Q 008206 386 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL--EDMAITKRALDWAISVPKIIRSS 463 (574)
Q Consensus 386 ~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~m--g~~~l~~e~~e~~~~~p~i~~~~ 463 (574)
.+..+.++...++.|-..+..|... .||.++|+..-..-+|.....+ ...|. +. .+++..+. ...+-+..
T Consensus 128 ~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a-~~~ga~lag--~~~~~~~~---l~~~g~~l 199 (295)
T 3ipi_A 128 VIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAIS-ASIGAYTGG--AEEELAER---FSHFGNAL 199 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHH-HHHHHHHTT--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 5666777778888998888888654 4899999988655555443222 22221 22 34444433 35677888
Q ss_pred HHHHHHhcCCcchhhhhh-----cCCCCchhhHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCh-hHHHH
Q 008206 464 SLIARLDDDVHTYKVEQE-----RGDAPSSVECYVQQYGV--SEEEACNKIKGMVEIEWMNINEEIQDPNHPPL-QWLLP 535 (574)
Q Consensus 464 ~~i~RL~NDI~S~~~E~~-----rG~~~n~V~cyMke~g~--S~eeA~~~i~~~ie~~wk~ln~e~l~~~~~p~-~~~~~ 535 (574)
++..-+.||+..+....+ .|. .+...+|..+.+- ..+.|.+.+.+.++++.+.+.. +|. +-++.
T Consensus 200 GlaFQI~DDilD~~~~~~gkd~~~gk-~Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~~-------lp~~~~~~~ 271 (295)
T 3ipi_A 200 GTAYQIVDDILEFLEVVEGKESKFTS-ETLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLET-------FRECPARDK 271 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------CCHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHTT-------SCCSHHHHH
T ss_pred HHHHHHHHHHHHhcCCccCCCcccCc-ccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHh-------CCCchHHHH
Confidence 888899999988765432 232 2666666544321 1455666666666666655542 443 44555
Q ss_pred HHHHhhhh
Q 008206 536 SLNLARMM 543 (574)
Q Consensus 536 ~lN~aR~~ 543 (574)
..++++.+
T Consensus 272 L~~l~~~~ 279 (295)
T 3ipi_A 272 LFQITDYI 279 (295)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 66666543
No 22
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=69.14 E-value=93 Score=31.72 Aligned_cols=87 Identities=10% Similarity=-0.013 Sum_probs=57.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhc--CCccccHHHHhhhcchhHHHHH
Q 008206 385 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL--EDMAITKRALDWAISVPKIIRS 462 (574)
Q Consensus 385 ~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~m--g~~~l~~e~~e~~~~~p~i~~~ 462 (574)
..+..+.++...++.|-..+..|.. +..||.++|+..-..-+|..+..+ ..+|. +. .+++..+. ...+-..
T Consensus 139 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~-~~~ga~lag--~~~~~~~~---l~~~g~~ 211 (341)
T 3mzv_A 139 RVMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAA-TEVGGIIGG--APEDQVQA---LFDYGDA 211 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT--CCHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHcC--CCHHHHHH---HHHHHHH
Confidence 4677788888999999999999864 446899999987665555443322 22221 22 34444333 3567788
Q ss_pred HHHHHHHhcCCcchhh
Q 008206 463 SSLIARLDDDVHTYKV 478 (574)
Q Consensus 463 ~~~i~RL~NDI~S~~~ 478 (574)
.++..-+.||+..+.-
T Consensus 212 lG~aFQI~DD~ld~~~ 227 (341)
T 3mzv_A 212 LGIAFQIVDDLLDYGG 227 (341)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhccC
Confidence 8888899999887743
No 23
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=68.55 E-value=66 Score=32.98 Aligned_cols=87 Identities=11% Similarity=0.020 Sum_probs=58.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhc--CCccccHHHHhhhcchhHHHHH
Q 008206 385 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL--EDMAITKRALDWAISVPKIIRS 462 (574)
Q Consensus 385 ~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~m--g~~~l~~e~~e~~~~~p~i~~~ 462 (574)
..+..+.++...++.|-+.+..|.. +.-||.++|+..-..-+|..+... ...|. +. .+++..+. .-.+-+.
T Consensus 151 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~-~~~ga~lag--~~~~~~~~---l~~~g~~ 223 (345)
T 3oyr_A 151 KALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAA-SEAGAVSAG--VDVAKSEA---LRDYGLN 223 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT--CCHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHcC--CCHHHHHH---HHHHHHH
Confidence 4677788888899999999988853 345899999998666555543322 22221 22 34554433 3567788
Q ss_pred HHHHHHHhcCCcchhh
Q 008206 463 SSLIARLDDDVHTYKV 478 (574)
Q Consensus 463 ~~~i~RL~NDI~S~~~ 478 (574)
.++..-+.||+..+.-
T Consensus 224 lG~aFQi~DD~lD~~~ 239 (345)
T 3oyr_A 224 LGLAFQLADDALDYGG 239 (345)
T ss_dssp HHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHhccC
Confidence 8888899999988754
No 24
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=67.98 E-value=42 Score=34.25 Aligned_cols=87 Identities=7% Similarity=0.002 Sum_probs=58.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHh--cCCccccHHHHhhhcchhHHHHH
Q 008206 385 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRS 462 (574)
Q Consensus 385 ~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~ 462 (574)
..+..+.++...++.|-..+..|.. +..||.++|+..-..-+|..+..+. .+| ++. .+++..+. ...+-..
T Consensus 133 ~~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~lag--~~~~~~~~---l~~~g~~ 205 (334)
T 3rmg_A 133 EIIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACA-EAAALSVQ--VGEEEVAF---ARLLGEY 205 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHH-HHHHHHTT--CCHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHH-HHHHHHcC--CCHHHHHH---HHHHHHH
Confidence 4677788889999999999988854 3458999999987666555433222 222 122 34444333 3667788
Q ss_pred HHHHHHHhcCCcchhh
Q 008206 463 SSLIARLDDDVHTYKV 478 (574)
Q Consensus 463 ~~~i~RL~NDI~S~~~ 478 (574)
.++..-+.||+..+..
T Consensus 206 lG~aFQi~DD~ld~~~ 221 (334)
T 3rmg_A 206 IGICFQIKDDIFDYFD 221 (334)
T ss_dssp HHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhccCCC
Confidence 8888899999988763
No 25
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=67.97 E-value=49 Score=33.00 Aligned_cols=120 Identities=9% Similarity=-0.012 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhc--CCccccHHHHhhhcchhHHHHHH
Q 008206 386 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL--EDMAITKRALDWAISVPKIIRSS 463 (574)
Q Consensus 386 ~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~m--g~~~l~~e~~e~~~~~p~i~~~~ 463 (574)
.+..+.++...++.|-..+..|......||.++|+..-..-+|...... ...|. +. .+++ ..-++-...
T Consensus 135 ~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~-~~~ga~lag--~~~~------~l~~~g~~l 205 (284)
T 2ftz_A 135 IFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFC-FSAPFILXG--XDHT------XMXLLGEXF 205 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHT--CCCH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHH-HHHHHHHhC--CChh------HHHHHHHHH
Confidence 5666777778899999999999765447899999998666555443222 22221 11 1222 225677788
Q ss_pred HHHHHHhcCCcchhhhh-hcCC-----C--CchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008206 464 SLIARLDDDVHTYKVEQ-ERGD-----A--PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 520 (574)
Q Consensus 464 ~~i~RL~NDI~S~~~E~-~rG~-----~--~n~V~cyMke~g~S~eeA~~~i~~~ie~~wk~ln~ 520 (574)
++..-+.||+..+.-.. .-|. . .+...+| ..+.|.+.+.+.++++.+.+..
T Consensus 206 G~aFQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 264 (284)
T 2ftz_A 206 GVAFQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXV------GIQXAREMADXYYEEVLXGIES 264 (284)
T ss_dssp HHHHHHHHHHHHHHHHCCCC-----------CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhcCCHHhhCCCcchhccccchHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 88889999999886543 2232 1 2343333 3688999999999999988875
No 26
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=67.58 E-value=25 Score=35.45 Aligned_cols=111 Identities=8% Similarity=0.082 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhc--CCccccHHHHhhhcchhHHHHHHHHHHHHhcC
Q 008206 395 KGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL--EDMAITKRALDWAISVPKIIRSSSLIARLDDD 472 (574)
Q Consensus 395 ~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~m--g~~~l~~e~~e~~~~~p~i~~~~~~i~RL~ND 472 (574)
..++.|-..+..|... .+|.++|+..-..-+|..+... ...|. +. .+++..+. .-++-...++..-+.||
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~-~~~ga~lag--~~~~~~~~---l~~~g~~lG~aFQI~DD 219 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFA-VMSAADIAN--VDDTTKEH---LESYSYHLGMMFQIKDD 219 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHT--CCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHH-HHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5577777777777543 7899999998666555443322 22221 11 34454433 35677888888899999
Q ss_pred Ccchhhhhh-----------cCCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008206 473 VHTYKVEQE-----------RGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 520 (574)
Q Consensus 473 I~S~~~E~~-----------rG~~~n~V~cyMke~g~S~eeA~~~i~~~ie~~wk~ln~ 520 (574)
+..+.-..+ .|.. +.+.+|- .+.|.+.+.+.++++.+.+..
T Consensus 220 ilD~~~d~~~~GK~~g~Dl~~gK~-T~p~l~a------l~~a~~~a~~~~~~A~~~L~~ 271 (301)
T 1rtr_A 220 LLDCYGDEAKLGKKVGSDLENNKS-TYVSLLG------KDGAEDKLTYHRDAAVDELTQ 271 (301)
T ss_dssp HHHHHHHHCC-------------C-CHHHHHH------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCHHHhCCCcchHHHcCCC-cHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 988754321 1222 5554443 578888899999988877764
No 27
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=65.86 E-value=43 Score=34.10 Aligned_cols=111 Identities=10% Similarity=0.088 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHh--cCCccccHHHHhhhcchhHHHHHHHHHHHHhcC
Q 008206 395 KGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDD 472 (574)
Q Consensus 395 ~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~ND 472 (574)
..++.|-..+..|... .||.++|+..-..-+|.... .....| ++.. .+++..+. ..++-+..++..-+.||
T Consensus 158 ~~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L~~-~a~~~Ga~lag~-a~~~~~~~---l~~~g~~lGlAFQI~DD 230 (324)
T 3ts7_A 158 AGMVGGQAIDLASVGK--KLDLPGLENMHIRKTGALIR-ASVRLACLARPG-LPAEQFDR---LDHYAKCIGLAFQIQDD 230 (324)
T ss_dssp TTHHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHH-HHHHHHHTTSTT-CCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC--CCCHHHHHHHHHhhHHHHHH-HHHHHHHHHcCC-CCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4567777777777543 78999999985444443332 222333 2231 34454433 35677788888899999
Q ss_pred Ccchhhhh-----------hcCCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 008206 473 VHTYKVEQ-----------ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNIN 519 (574)
Q Consensus 473 I~S~~~E~-----------~rG~~~n~V~cyMke~g~S~eeA~~~i~~~ie~~wk~ln 519 (574)
+..+.-+. ..|.. +.+.+| ..|.|.+.+.+.++++...+.
T Consensus 231 iLD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L~ 281 (324)
T 3ts7_A 231 ILDEESDTQTLGKTRGKDRDHNKP-NYPALL------GLSGAKEKAEEMHEAALESLA 281 (324)
T ss_dssp HHHHTCC---------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 98875431 22222 555554 478899999998888886654
No 28
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=64.87 E-value=21 Score=35.91 Aligned_cols=111 Identities=16% Similarity=0.149 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhc--CCccccHHHHhhhcchhHHHHHHHHHHHHhcC
Q 008206 395 KGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL--EDMAITKRALDWAISVPKIIRSSSLIARLDDD 472 (574)
Q Consensus 395 ~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~m--g~~~l~~e~~e~~~~~p~i~~~~~~i~RL~ND 472 (574)
..++.|-..+..|...+..||.++|+..-..-+|...... ...|. +. .+++ ....+-...++..-+.||
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~-~~~ga~lag--~~~~------~l~~~g~~lG~aFQI~DD 217 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFA-AQAGAILAG--ADRG------PLTAYATALGLAFQIADD 217 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHT--CCCH------HHHHHHHHHHHHHHHHTT
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHH-HHHHHHHcC--CCHH------HHHHHHHHHHHHHHHHHH
Confidence 4577788888888765678999999997544444332222 22221 11 2222 125567788888899999
Q ss_pred Ccchhhhhh-cC-----CC----CchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008206 473 VHTYKVEQE-RG-----DA----PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 520 (574)
Q Consensus 473 I~S~~~E~~-rG-----~~----~n~V~cyMke~g~S~eeA~~~i~~~ie~~wk~ln~ 520 (574)
+..+.-+.+ -| |. .+.+.+| ..+.|.+.+.+.++++...++.
T Consensus 218 ilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 269 (297)
T 3m0g_A 218 ILDVEGNEEAAGKRLGKDAEAHKATFVSLL------GLAGAKSRAADLVAEAEAALAP 269 (297)
T ss_dssp CC---------------------CCHHHHH------CSSHHHHHHHHHHHHHHHHTGG
T ss_pred HHhccCCHHHhCCCccchhhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 998854321 11 22 1444443 3577888889999988877663
No 29
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=62.38 E-value=39 Score=34.07 Aligned_cols=110 Identities=11% Similarity=0.117 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHhhh-ccccchhhHHHHHHHh--cCCccccHHHHhhhcchhHHHHHHHHHHHHhc
Q 008206 395 KGLVKAYFVEAKWFHAKYVPTFEECVENS-TMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDD 471 (574)
Q Consensus 395 ~~~~~a~l~EAkW~~~g~vPT~eEYl~~~-~~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~N 471 (574)
..++.|-..+..|.. ..||.++|+..- ..|++. +. .....| ++. .+++..+. ..++-+..++..-+.|
T Consensus 156 ~~~~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L-~~-~~~~~ga~lag--a~~~~~~~---l~~~g~~lGlaFQI~D 226 (302)
T 3p8l_A 156 QGMVSGQMGDIEGEK--VSLTLEELAAVHEKKTGAL-IE-FALIAGGVLAN--QTEEVIGL---LTQFAHHYGLAFQIRD 226 (302)
T ss_dssp TTHHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHH-HH-HHHHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccC--CCCCHHHHHHHHHcCcHHH-HH-HHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHH
Confidence 346677777777753 378999999974 555543 22 222222 122 34444433 3567788888889999
Q ss_pred CCcchhhhh-----------hcCCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008206 472 DVHTYKVEQ-----------ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 520 (574)
Q Consensus 472 DI~S~~~E~-----------~rG~~~n~V~cyMke~g~S~eeA~~~i~~~ie~~wk~ln~ 520 (574)
|+..+.-+. ..|.. +...+| ..+.|.+.+.+.++++.+.++.
T Consensus 227 DilD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 279 (302)
T 3p8l_A 227 DLLDATSTEADLGKKVGRDEALNKS-TYPALL------GIAGAKDALTHQLAEGSAVLEK 279 (302)
T ss_dssp HHHHTTC-----------------C-CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCHHHhCCChhhHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 998874331 22222 444444 4789999999999999988775
No 30
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=62.04 E-value=30 Score=34.81 Aligned_cols=111 Identities=12% Similarity=0.114 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHhhhc-cccchhhHHHHHHHhc--CCccccHHHHhhhcchhHHHHHHHHHHHHhc
Q 008206 395 KGLVKAYFVEAKWFHAKYVPTFEECVENST-MSSGYPMLAVEALVGL--EDMAITKRALDWAISVPKIIRSSSLIARLDD 471 (574)
Q Consensus 395 ~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~-~Ssg~~~l~~~~~~~m--g~~~l~~e~~e~~~~~p~i~~~~~~i~RL~N 471 (574)
..++.|-..+..|. +..||.++|+..-. .|++. +. .....|. +.. .+++.. ....++-+..++..-+.|
T Consensus 158 ~~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L-~~-~~~~~ga~lag~-~~~~~~---~~l~~~g~~lG~aFQI~D 229 (302)
T 3p8r_A 158 QGMCLGQALDLAAE--NRLISLEELETIHRNKTGAL-MR-CAIRLGALAAGE-KGRAML---PHLDRYAEAVGLAFQVQD 229 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHH-HH-HHHHHHHHTTTH-HHHTTH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHH-HH-HHHHHHHHHcCC-CCHHHH---HHHHHHHHHHHHHHHHHH
Confidence 45677878888886 45789999999854 45443 22 2222222 221 223322 223567788888889999
Q ss_pred CCcchhhhh-----------hcCCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008206 472 DVHTYKVEQ-----------ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 520 (574)
Q Consensus 472 DI~S~~~E~-----------~rG~~~n~V~cyMke~g~S~eeA~~~i~~~ie~~wk~ln~ 520 (574)
|+..+.-+. ..|.. +.+.+| ..+.|.+.+.+.++++.+.++.
T Consensus 230 DilD~~~~~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 282 (302)
T 3p8r_A 230 DILDIISDTETLGKPQGSDQELNKS-TYPALL------GLEGAQQKAHTLLQEALLALEA 282 (302)
T ss_dssp HHHHHTTC---------------CC-CHHHHH------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhccCCHHHhCCCcchHHhcCCc-hHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 998875432 12222 555554 3688899999999988877763
No 31
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=60.80 E-value=57 Score=33.21 Aligned_cols=86 Identities=17% Similarity=0.087 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhc--CCccccHHHHhhhcchhHHHHHH
Q 008206 386 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL--EDMAITKRALDWAISVPKIIRSS 463 (574)
Q Consensus 386 ~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~m--g~~~l~~e~~e~~~~~p~i~~~~ 463 (574)
.+..+.++...++.|-..+..|.... ..|.++|++.-..-+|...... ..+|. +. .+++..+. .-++-...
T Consensus 138 ~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~-~~~ga~lag--~~~~~~~~---l~~~g~~l 210 (342)
T 1wy0_A 138 VLEVIVKASNELCEGQARDLEFEKKS-TVTIEEYMEMISGKTGALFEAS-AKVGGIIGT--DNEEYIKA---LSSWGRNV 210 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHC--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHhhHHHHHHH-HHHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 46667777888999999999996543 4599999998666555543332 22221 11 34444433 36677888
Q ss_pred HHHHHHhcCCcchhh
Q 008206 464 SLIARLDDDVHTYKV 478 (574)
Q Consensus 464 ~~i~RL~NDI~S~~~ 478 (574)
++..-+.||+..+.-
T Consensus 211 G~aFQI~DD~lD~~~ 225 (342)
T 1wy0_A 211 GIAFQIWDDVLDLIA 225 (342)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhccC
Confidence 888899999988753
No 32
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=57.64 E-value=42 Score=34.33 Aligned_cols=111 Identities=14% Similarity=0.109 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhc--CCccccHHHHhhhcchhHHHHHHHHHHHHhcC
Q 008206 395 KGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL--EDMAITKRALDWAISVPKIIRSSSLIARLDDD 472 (574)
Q Consensus 395 ~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~m--g~~~l~~e~~e~~~~~p~i~~~~~~i~RL~ND 472 (574)
..++.|-..+..|... .+|.++|+..-..-+|..+... ...|. +. .+++..+. ..++-...++..-+.||
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a-~~~Ga~lag--a~~~~~~~---l~~~g~~lGlAFQI~DD 263 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFA-CEAGAIIAG--SNQAERQR---LRLFGEKIGLSFQLADD 263 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHT--CCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHH-HHHHHHHhC--CCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5577777888888654 7899999998766555443322 22221 11 34444433 35677888888899999
Q ss_pred Ccchhhhh-----------hcCCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008206 473 VHTYKVEQ-----------ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 520 (574)
Q Consensus 473 I~S~~~E~-----------~rG~~~n~V~cyMke~g~S~eeA~~~i~~~ie~~wk~ln~ 520 (574)
+..+.-+. ..|.. +.+.+| ..+.|.+.+.+.++++.+.+..
T Consensus 264 iLD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------~le~a~~~a~~~~~~A~~~L~~ 315 (335)
T 2h8o_A 264 LLDLTADAATMGKATGKDAARGKG-TLVALR------GEAWAREKLQEQVAEASELLAP 315 (335)
T ss_dssp HHHHC-----------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHhcCCHHHhCCCcchHHhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 98875432 12222 554444 3688999999999999887764
No 33
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=55.91 E-value=46 Score=33.80 Aligned_cols=111 Identities=13% Similarity=0.132 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHh--cCCccccHHHHhhhcchhHHHHHHHHHHHHhcCC
Q 008206 396 GLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDDV 473 (574)
Q Consensus 396 ~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI 473 (574)
.++.|-..+..|. +..||.++|+..-..-+|.... .....| ++.. .+++..+. ...+-+..++..-+.||+
T Consensus 152 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~-~a~~~Ga~lag~-a~~~~~~~---l~~~g~~lGlAFQI~DDi 224 (317)
T 4f62_A 152 GMITGQMIDLSSE--NKNISLAELEQMHVHKTGALIK-ASVRMGALSTGQ-VKPEQLAK---LDAYAHAIGLAFQVQDDI 224 (317)
T ss_dssp THHHHHHHHHHTS--SSCCCHHHHHHHHHHHTHHHHH-HHHHHHHHTTTC-CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHhcc--CCCCCHHHHHHHHHhchHHHHH-HHHHHHHHHcCC-CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4667777777775 3458999999985443333322 222222 2232 34444433 356778888888999999
Q ss_pred cchhhhh-----------hcCCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008206 474 HTYKVEQ-----------ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 520 (574)
Q Consensus 474 ~S~~~E~-----------~rG~~~n~V~cyMke~g~S~eeA~~~i~~~ie~~wk~ln~ 520 (574)
..+.-+. ..|.. +.+.+| ..+.|.+.+.+.++++.+.++.
T Consensus 225 LD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 275 (317)
T 4f62_A 225 IDLTSDTETLGKTQFSDAEANKA-TYPKLL------GLDGAKALVVRLHEQAIAQISE 275 (317)
T ss_dssp HHTC----------------CCC-CHHHHH------HHHHHHHHHHHHHHHHHHHHGG
T ss_pred HhccCChHhhCCCcchHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8875332 12222 555555 4788999999999999887764
No 34
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=55.87 E-value=1.1e+02 Score=31.05 Aligned_cols=103 Identities=10% Similarity=0.047 Sum_probs=63.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhc--CCccccHHHHhhhcchhHHHHH
Q 008206 385 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL--EDMAITKRALDWAISVPKIIRS 462 (574)
Q Consensus 385 ~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~m--g~~~l~~e~~e~~~~~p~i~~~ 462 (574)
..+..+.+....++.|-+.+..|.. +.-||.++|++.-..-+|..+. .....|+ +. .+++..+. ...+-+.
T Consensus 143 ~~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~-~~~~~ga~lag--~~~~~~~~---l~~~g~~ 215 (334)
T 3pko_A 143 SLIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFA-LSCYQGAQLAG--APQSVIDR---TRDIGIA 215 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHH-HHHHHHHHHTT--CCHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHH-HHHHHHHHHcC--CCHHHHHH---HHHHHHH
Confidence 3566677888888988888887753 4568999999875554444432 2222222 22 34444433 3566777
Q ss_pred HHHHHHHhcCCcchhh-----------hhhcCCCCchhhHHHHh
Q 008206 463 SSLIARLDDDVHTYKV-----------EQERGDAPSSVECYVQQ 495 (574)
Q Consensus 463 ~~~i~RL~NDI~S~~~-----------E~~rG~~~n~V~cyMke 495 (574)
.++..-+.||+..+.- ....|.. +...+|.-+
T Consensus 216 lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~-Tlp~i~al~ 258 (334)
T 3pko_A 216 IGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVY-SLPLLLSLS 258 (334)
T ss_dssp HHHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCC-CHHHHHHGG
T ss_pred HHHHHHHHHHHHhccCChhhcCCCCCCccccCch-hHHHHHHHH
Confidence 7888888888877643 2334554 665555544
No 35
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=54.41 E-value=47 Score=33.43 Aligned_cols=123 Identities=13% Similarity=0.085 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHhhhc-cccchhhHHHHHHHh--cCCccccHHHHhhhcchhHHHHHHHHHHHHhcCC
Q 008206 397 LVKAYFVEAKWFHAKYVPTFEECVENST-MSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDDV 473 (574)
Q Consensus 397 ~~~a~l~EAkW~~~g~vPT~eEYl~~~~-~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI 473 (574)
++.|-..+..|... .||.++|+..-. .|++. ... ....| ++.. .+++..+. ...+-...++..-+.||+
T Consensus 154 ~~~GQ~lDl~~~~~--~~s~~~y~~i~~~KTg~L-~~~-~~~~ga~lag~-~~~~~~~~---l~~~g~~lGlaFQI~DDi 225 (304)
T 3lsn_A 154 MVGGQAIDLGSVGL--KLDQQALEYMHRHKTGAL-IEA-SVILGALASGR-AEKGELKA---LQTYAQAIGLAFQVQDDI 225 (304)
T ss_dssp HHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHH-HHH-HHHHHHHHTTC-CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHccCC--CCCHHHHHHHHHhhhHHH-HHH-HHHHHHHHcCC-CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 67777777777543 489999999854 45443 222 22222 1221 15554433 356778888888999999
Q ss_pred cchhhhh-hcC-----CC----CchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhh
Q 008206 474 HTYKVEQ-ERG-----DA----PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLAR 541 (574)
Q Consensus 474 ~S~~~E~-~rG-----~~----~n~V~cyMke~g~S~eeA~~~i~~~ie~~wk~ln~e~l~~~~~p~~~~~~~lN~aR 541 (574)
..+.-+. .-| |. .+.+.+| ..+.|.+.+.+.++++.+.++. +|.. ......++.
T Consensus 226 lD~~~~~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~-------l~~~-~~~L~~l~~ 289 (304)
T 3lsn_A 226 LDVESDTATLGKRQGADIARDKPTYPALL------GLAAAKEYALELRDQALHALRP-------FDAA-AEPLRELAR 289 (304)
T ss_dssp HHHHHHHHHC------------CCHHHHH------CHHHHHHHHHHHHHHHHHHTTT-------SCGG-GHHHHHHHH
T ss_pred HhccCChHHhCCCcccHHhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHh-------Cchh-HHHHHHHHH
Confidence 8875432 112 11 2555444 4788999999999988877652 5532 444445554
No 36
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=51.77 E-value=67 Score=33.04 Aligned_cols=87 Identities=14% Similarity=0.100 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh----------cCC-CCChHHHHhhhccccchhhHHHHHHHhc--CCccccHHHHhh
Q 008206 386 CMYYAKEAIKGLVKAYFVEAKWFH----------AKY-VPTFEECVENSTMSSGYPMLAVEALVGL--EDMAITKRALDW 452 (574)
Q Consensus 386 ~~~~~k~~~~~~~~a~l~EAkW~~----------~g~-vPT~eEYl~~~~~Ssg~~~l~~~~~~~m--g~~~l~~e~~e~ 452 (574)
.+..+.++...++.|-..+..|.. .+. .||.++|+..-..-+|.....+ ..+|. +. .+++..+.
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~-~~~ga~lag--~~~~~~~~ 209 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAA-AKWGVLSVS--DDRGLAEA 209 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHcC--CCHHHHHH
Confidence 567788888999999999999962 233 6799999998666555443322 22221 11 34444333
Q ss_pred hcchhHHHHHHHHHHHHhcCCcchhh
Q 008206 453 AISVPKIIRSSSLIARLDDDVHTYKV 478 (574)
Q Consensus 453 ~~~~p~i~~~~~~i~RL~NDI~S~~~ 478 (574)
.-.+-...++..-+.||+..+.-
T Consensus 210 ---l~~~g~~lG~aFQI~DD~lD~~g 232 (358)
T 4dhd_A 210 ---AWNFGMAAGVAFQIIDDVLDIYG 232 (358)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhcC
Confidence 35677788888889999887743
No 37
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=49.73 E-value=88 Score=31.88 Aligned_cols=88 Identities=13% Similarity=0.017 Sum_probs=56.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHh--cCCccccHHHHhhhcchhHHHHH
Q 008206 385 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRS 462 (574)
Q Consensus 385 ~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~ 462 (574)
..+..+.++...++.|-..+..|... ..+|.++|+..-..-+|..+..+ ...| ++. .+++..+. .-++-..
T Consensus 153 ~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~-~~~ga~lag--~~~~~~~~---l~~~g~~ 225 (348)
T 3apz_A 153 EVVALLATAVEHLVTGETMEITSSTE-QRYSMDYYMQKTYYKTASLISNS-CKAVAVLTG--QTAEVAVL---AFEYGRN 225 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHH-HHTCHHHHHHHHHHHHTHHHHHH-HHHHHHTTT--CCHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHcchHHHHHHH-HHHHHHHcC--cCHHHHHH---HHHHHHH
Confidence 35677788888899998888777532 35799999998555444433222 2222 222 34444333 3567778
Q ss_pred HHHHHHHhcCCcchhhh
Q 008206 463 SSLIARLDDDVHTYKVE 479 (574)
Q Consensus 463 ~~~i~RL~NDI~S~~~E 479 (574)
.++..-+.||+..+.-.
T Consensus 226 lG~aFQi~DD~lD~~gd 242 (348)
T 3apz_A 226 LGLAFQLIDDILDFTGT 242 (348)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhccCC
Confidence 88888999999887543
No 38
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=48.87 E-value=93 Score=31.05 Aligned_cols=112 Identities=14% Similarity=0.140 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhc-C-CccccHHHHhhhcchhHHHHHHHHHHHHhcC
Q 008206 395 KGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL-E-DMAITKRALDWAISVPKIIRSSSLIARLDDD 472 (574)
Q Consensus 395 ~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~m-g-~~~l~~e~~e~~~~~p~i~~~~~~i~RL~ND 472 (574)
..++.|-..+..|... .+|.++|+..-..-+|..... ....|. = -. .+++..+. ..++-...++..-+.||
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~-~~~~ga~l~ag-~~~~~~~~---l~~~g~~lG~aFQi~DD 224 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRA-AVRLGALSAGD-KGRRALPV---LDKYAESIGLAFQVQDD 224 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHH-HHHHHHHTTTH-HHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHH-HHHHHHHHhCC-CCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4567777778887543 789999999965544443322 222221 0 11 34444333 35677888888899999
Q ss_pred Ccchhhhh-----------hcCCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008206 473 VHTYKVEQ-----------ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 520 (574)
Q Consensus 473 I~S~~~E~-----------~rG~~~n~V~cyMke~g~S~eeA~~~i~~~ie~~wk~ln~ 520 (574)
+..+.-.. ..|.. +...+| ..+.|.+.+.+.++++.+.+..
T Consensus 225 ~lD~~~~~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 276 (299)
T 1rqj_A 225 ILDVVGDTATLGKRQGADQQLGKS-TYPALL------GLEQARKKARDLIDDARQSLKQ 276 (299)
T ss_dssp HHHHHSCHHHHSSCTTHHHHHTCC-CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHhCCChhhHHHcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 98875432 12332 555444 2577888999999999988775
No 39
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=47.48 E-value=15 Score=27.27 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHHHh
Q 008206 50 KRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRL 86 (574)
Q Consensus 50 ~~~~~lk~~vr~~l~~~~~~~~d~~~~l~lID~lqrL 86 (574)
+++.=|.+|||.-|..+. +.++++.++.+||-|
T Consensus 16 EeIRwlIeE~Rh~Lk~Te----nsfeQItfmqalQLl 48 (58)
T 1pd3_A 16 EEIRWLIEEVRHRLKITE----NSFEQITFMQALQLL 48 (58)
T ss_dssp HHHHHHHHHHHHTCCCCT----TSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh----chHHHHHHHHHHHHH
Confidence 455567778888777777 889999999999875
No 40
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=45.65 E-value=87 Score=31.81 Aligned_cols=111 Identities=12% Similarity=0.093 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHhhh-ccccchhhHHHHHHHh--cCCccccHHHHhhhcchhHHHHHHHHHHHHhc
Q 008206 395 KGLVKAYFVEAKWFHAKYVPTFEECVENS-TMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDD 471 (574)
Q Consensus 395 ~~~~~a~l~EAkW~~~g~vPT~eEYl~~~-~~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~N 471 (574)
..++.|-..+..|... ..||.++|+..- ..|++. .. .....| ++. .+++..+. ..++-+..++..-+.|
T Consensus 180 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTa~L-~~-~a~~~Ga~lag--a~~~~~~~---l~~~g~~lGlAFQI~D 251 (324)
T 3uca_A 180 DGMIGGQIVDIINEDK-EEISLKELDYMHLKKTGEL-IK-ASIMSGAVLAE--ASEGDIKK---LEGFGYKLGLAFQIKD 251 (324)
T ss_dssp TTHHHHHHHHHHTSSC-SSCCHHHHHHHHHHHTHHH-HH-HHHHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcCCC-CCCCHHHHHHHHhcchHHH-HH-HHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4567787878888543 368999999985 445443 22 222222 122 34444433 3567778888889999
Q ss_pred CCcchhhhh-----------hcCCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008206 472 DVHTYKVEQ-----------ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 520 (574)
Q Consensus 472 DI~S~~~E~-----------~rG~~~n~V~cyMke~g~S~eeA~~~i~~~ie~~wk~ln~ 520 (574)
|+..+.-+. ..|.. +...+| ..+.|.+.+.+.++++.+.+..
T Consensus 252 DiLD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~a~~~~~~A~~~L~~ 304 (324)
T 3uca_A 252 DILDVVGNAKDLGKNVHKDQESNKN-NYITIF------GLEECKKKCVNITEECIEILSS 304 (324)
T ss_dssp HHHHHCCC------------------CHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccCCHHHhCCCcchHhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 998774321 12222 444443 4689999999999999988764
No 41
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=44.64 E-value=81 Score=31.82 Aligned_cols=108 Identities=7% Similarity=0.009 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHhhh-ccccchhhHHHHHHHh--cCCccccHHHHhhhcchhHHHHHHHHHHHHhcC
Q 008206 396 GLVKAYFVEAKWFHAKYVPTFEECVENS-TMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDD 472 (574)
Q Consensus 396 ~~~~a~l~EAkW~~~g~vPT~eEYl~~~-~~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~ND 472 (574)
.++.|-..+..|. +..||.++|+..- ..|++. +... ...| ++. .+++..+ ....+-...++..-+.||
T Consensus 156 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L-~~~a-~~~ga~lag--a~~~~~~---~l~~~g~~lGlaFQI~DD 226 (309)
T 3pde_A 156 GMVAGQAKDIQSE--HVNLPLSQLRVLHKEKTGAL-LHYA-VQAGLILGQ--APEAQWP---AYLQFADAFGLAFQIYDD 226 (309)
T ss_dssp THHHHHHHHHHTT--TCCCCHHHHHHHHHHHTHHH-HHHH-HHHHHHHTT--CCGGGHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcc--CCCCCHHHHHHHHHhccHHH-HHHH-HHHHHHHcC--CCHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4566666677774 3468999999985 445443 2222 2222 122 2333332 235677788888899999
Q ss_pred Ccchhhhh-----------hcCCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 008206 473 VHTYKVEQ-----------ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNIN 519 (574)
Q Consensus 473 I~S~~~E~-----------~rG~~~n~V~cyMke~g~S~eeA~~~i~~~ie~~wk~ln 519 (574)
+..+.-.. ..|.. +.+.+| ..+.|.+...++++++...+.
T Consensus 227 iLD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~~~~~~~~a~~~l~ 277 (309)
T 3pde_A 227 ILDVVSSPAEMGKATQKDADEAKN-TYPGKL------GLIGANQALIDTIHSGQAALQ 277 (309)
T ss_dssp HHHHHCC-----------CTTTSS-SHHHHH------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHhHHHHHHHHHHHHHHHH
Confidence 98874321 22222 444444 367888899999999888776
No 42
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=42.35 E-value=1.5e+02 Score=29.49 Aligned_cols=112 Identities=15% Similarity=0.152 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhc--CCccccHHHHhhhcchhHHHHHHHHHHHHhc
Q 008206 394 IKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL--EDMAITKRALDWAISVPKIIRSSSLIARLDD 471 (574)
Q Consensus 394 ~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~m--g~~~l~~e~~e~~~~~p~i~~~~~~i~RL~N 471 (574)
...++.+-..+..|. +..||.++|...-..-+|..+..+ ...|. +. .+++..+. ..++-+..++..-+.|
T Consensus 144 ~~~~~~GQ~lDl~~~--~~~~~~~~y~~i~~~KTg~L~~~a-~~~ga~lag--a~~~~~~~---l~~~g~~lGlaFQI~D 215 (291)
T 3npk_A 144 LNGMVIGQAIDCFFE--DKRLSLNELEFLHTHKTARLIAAA-LKMGCEICE--LNNEESNQ---IYKLGLKLGLIFQIND 215 (291)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CCCCCHHHHHHHHHcccHHHHHHH-HHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHH
Confidence 455666766677774 346899999998544444332222 22221 22 34443332 3667788888889999
Q ss_pred CCcchhhhh-hcCCC-------CchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 008206 472 DVHTYKVEQ-ERGDA-------PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNIN 519 (574)
Q Consensus 472 DI~S~~~E~-~rG~~-------~n~V~cyMke~g~S~eeA~~~i~~~ie~~wk~ln 519 (574)
|+..+.-.. .-|.. .+.+.++ ..+.|.+...++++++.+.++
T Consensus 216 DiLD~~gd~~~~GK~~~~d~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~ 265 (291)
T 3npk_A 216 DIIDVTTSQEQSGKPTNNDIHKNSFVNLL------GLEQAIKTKENLLNECEQDLE 265 (291)
T ss_dssp HHHHHC----------------CCHHHHH------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCChHHHCCccchhcCcchHHHHH------HHHHhHHHHHHHHHHHHHHHH
Confidence 998876432 22322 1333332 367888888888888887776
No 43
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=42.30 E-value=64 Score=32.59 Aligned_cols=112 Identities=18% Similarity=0.213 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhc--CCccccHHHH-hhhcchhHHHHHHHHHHHHh
Q 008206 394 IKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL--EDMAITKRAL-DWAISVPKIIRSSSLIARLD 470 (574)
Q Consensus 394 ~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~m--g~~~l~~e~~-e~~~~~p~i~~~~~~i~RL~ 470 (574)
...++.|-..+..|. +..||.++|+..-..-+|..+..+ ..+|. +. .+++.. +. ...+-+..+...-+.
T Consensus 158 ~~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~lga~lag--a~~~~~~~~---l~~~g~~lGlaFQI~ 229 (311)
T 3llw_A 158 IKGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISAS-LIMGLVASG--IKDEELFKW---LQAFGLKMGLCFQVL 229 (311)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHC--CCCHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHH
Confidence 345677777777775 567899999988544444332222 12221 11 233333 32 356778888888999
Q ss_pred cCCcchhhhh-hcCCCC-------chhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 008206 471 DDVHTYKVEQ-ERGDAP-------SSVECYVQQYGVSEEEACNKIKGMVEIEWMNIN 519 (574)
Q Consensus 471 NDI~S~~~E~-~rG~~~-------n~V~cyMke~g~S~eeA~~~i~~~ie~~wk~ln 519 (574)
||+..+.-+. .-|... +.+.++ ..+.|.+..+++++++.+.+.
T Consensus 230 DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~ 280 (311)
T 3llw_A 230 DDIIDVTQDEEESGKTTHLDSAKNSFVNLL------GLERANNYAQTLKTEVLNDLD 280 (311)
T ss_dssp HHHHHHHC-------------CCSCHHHHH------CHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccCChHHHCcccccccCcchHHHHH------HHHHHHHHHHHHHHHHHHHhh
Confidence 9998876432 233322 333222 368888889999988887766
No 44
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=41.55 E-value=1.4e+02 Score=30.03 Aligned_cols=112 Identities=11% Similarity=0.078 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHhhhc-cccchhhHHHHHHHhc-CCccccHHHHhhhcchhHHHHHHHHHHHHhcC
Q 008206 395 KGLVKAYFVEAKWFHAKYVPTFEECVENST-MSSGYPMLAVEALVGL-EDMAITKRALDWAISVPKIIRSSSLIARLDDD 472 (574)
Q Consensus 395 ~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~-~Ssg~~~l~~~~~~~m-g~~~l~~e~~e~~~~~p~i~~~~~~i~RL~ND 472 (574)
..++.|-..+..|... ..||.++|+..-. .|++...+.+.+ ..+ |.. .+++..+. ...+-...++..-+.||
T Consensus 158 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~-a~~~~~~~---l~~~g~~lGlaFQI~DD 231 (313)
T 3lom_A 158 SGMVSGQSLDLSELAK-SSVTEEQLREIHLLKTGKLILACFEM-VLAAQHE-VSEQIKSA---LRTYGKHIGLVFQMQDD 231 (313)
T ss_dssp TTHHHHHHHHHHTTTS-SCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSS-CCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC-CCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCC-CCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3567777777777532 3789999998854 555443222222 222 321 24444433 35677888888899999
Q ss_pred Ccchhhhh-----------hcCCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 008206 473 VHTYKVEQ-----------ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNIN 519 (574)
Q Consensus 473 I~S~~~E~-----------~rG~~~n~V~cyMke~g~S~eeA~~~i~~~ie~~wk~ln 519 (574)
+..+.-+. ..|.. +.+.+| ..+.|.+.+.+.++++.+.+.
T Consensus 232 ilD~~gd~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 282 (313)
T 3lom_A 232 YLDLYAPTQILGKGRSSDQANQKT-TFATLF------NKQQLEEEIAVHYQIAMDSLR 282 (313)
T ss_dssp HHHHHCC---------------CC-CHHHHS------CHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhccCCHHhhCCCCcchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 98875432 12222 444443 478899999999998886655
No 45
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=40.80 E-value=1.3e+02 Score=30.74 Aligned_cols=85 Identities=18% Similarity=0.160 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhc--CCccccHHHHhhhcchhHHHHHH
Q 008206 386 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL--EDMAITKRALDWAISVPKIIRSS 463 (574)
Q Consensus 386 ~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~m--g~~~l~~e~~e~~~~~p~i~~~~ 463 (574)
.+..+.++...++.|-..+..|... .-||.++|+..-..-+|..+... ..+|+ +. .+++..+. .-.+-+..
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~-~~~ga~lag--~~~~~~~~---l~~~g~~l 216 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLACA-SSIGAVLGG--ADERTADT---LEKYGYHL 216 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHHHH-HHHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 4566778888999999999999653 36899999997666555543322 22221 22 34554433 35677888
Q ss_pred HHHHHHhcCCcchh
Q 008206 464 SLIARLDDDVHTYK 477 (574)
Q Consensus 464 ~~i~RL~NDI~S~~ 477 (574)
++..-+.||+..+-
T Consensus 217 G~aFQi~DD~ld~~ 230 (352)
T 3nf2_A 217 GLAFQAVDDLLGIW 230 (352)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 88889999998774
No 46
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=39.34 E-value=42 Score=33.55 Aligned_cols=108 Identities=13% Similarity=0.076 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhhcC-CCCChHHHHhhh-ccccchhhHHHHHHHh--cCCccccHHHHhhhcchhHHHHHHHHHHHHhc
Q 008206 396 GLVKAYFVEAKWFHAK-YVPTFEECVENS-TMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDD 471 (574)
Q Consensus 396 ~~~~a~l~EAkW~~~g-~vPT~eEYl~~~-~~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~N 471 (574)
.++.|-..+..|...+ ..+|.++|+..- ..|++. .... ...| ++. .+++..+. .-++-...++..-+.|
T Consensus 161 ~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L-~~~a-~~~ga~lag--~~~~~~~~---l~~~g~~lG~aFQI~D 233 (293)
T 2j1p_A 161 GLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAAL-LEAS-AVLGGIIGG--GSDEEIER---LRKFARCIGLLFQVVD 233 (293)
T ss_dssp THHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHH-HHHH-HHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHH-HHHH-HHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4566777677774322 346899999884 445544 2221 2222 122 34454433 3567788888889999
Q ss_pred CCcchhhhhhcCCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008206 472 DVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 520 (574)
Q Consensus 472 DI~S~~~E~~rG~~~n~V~cyMke~g~S~eeA~~~i~~~ie~~wk~ln~ 520 (574)
|+..+..+. -.+...+| ..+.|.+.+.+.++++.+.+..
T Consensus 234 DiLD~~~~~----K~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 272 (293)
T 2j1p_A 234 DILDVTKSS----KLTYPKLM------GLEKSREFAEKLNTEARDQLLG 272 (293)
T ss_dssp HHHHHHC------CCCHHHHH------HHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHccCCc----cccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 998886443 23555444 4678888888888888877653
No 47
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=39.17 E-value=1.1e+02 Score=30.80 Aligned_cols=84 Identities=12% Similarity=0.066 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-hhcCCCCChHHHHhhhccccchh-hHHHH--HHHhcCCccccHHHHhhhcchhHHHH
Q 008206 386 CMYYAKEAIKGLVKAYFVEAKW-FHAKYVPTFEECVENSTMSSGYP-MLAVE--ALVGLEDMAITKRALDWAISVPKIIR 461 (574)
Q Consensus 386 ~~~~~k~~~~~~~~a~l~EAkW-~~~g~vPT~eEYl~~~~~Ssg~~-~l~~~--~~~~mg~~~l~~e~~e~~~~~p~i~~ 461 (574)
.+..+.++...++.|-..+..| ......||.++|+..-..-+|.. +.... .-+..|. +++.. .-.+-.
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~---~~~~~-----l~~~g~ 202 (330)
T 1wmw_A 131 VLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGK---TPPAA-----YEEGGL 202 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTC---CCCHH-----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCC---CHHHH-----HHHHHH
Confidence 5667788889999999999999 65435689999999866555444 22221 1122222 22221 356777
Q ss_pred HHHHHHHHhcCCcchh
Q 008206 462 SSSLIARLDDDVHTYK 477 (574)
Q Consensus 462 ~~~~i~RL~NDI~S~~ 477 (574)
..++..-+.||+..+.
T Consensus 203 ~lG~aFQi~DD~ld~~ 218 (330)
T 1wmw_A 203 RLGTAFQIVDDVLNLE 218 (330)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCccc
Confidence 8888888899988875
No 48
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=38.74 E-value=3.3e+02 Score=27.60 Aligned_cols=225 Identities=14% Similarity=0.154 Sum_probs=107.4
Q ss_pred hhHHHHHHHHHHHhhhhhhcccC-CHH----HHHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHHHHH
Q 008206 304 TRKFMTKIIAIASVIDDIYDVYG-TLE----ELKLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKL 378 (574)
Q Consensus 304 ~Rl~laK~~~l~~viDD~fD~yg-t~e----El~~ft~ai~~~~~~~~rWD~~~~~~lpe~mk~~~~al~~~~~ei~~~~ 378 (574)
.|..+.-+-.|.=..||+-|... ..+ .|+.|.+.+.. +.|.... .-|.. +.++..+-.+...+.. +
T Consensus 38 ~R~av~alYaf~R~aDdI~D~~~~~~~~k~~~L~~~~~~l~~-----~~~~~~~--~~~~~-~~ll~~~p~v~~~f~~-l 108 (343)
T 3vj8_A 38 MRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQ-----PDWRFME--SKEKD-RQVLEDFPTISLEFRN-L 108 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTC-----TTCCCCC--CCSTT-THHHHTHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhc-----chhhhcC--CChhh-HHHHhcCcHHHHHHHH-h
Confidence 56666677788889999999764 443 34445544441 1122111 11211 2222222212222211 0
Q ss_pred hcCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHhhhcchhH
Q 008206 379 VNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPK 458 (574)
Q Consensus 379 ~~g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~ 458 (574)
+ . ....-..+....++.++- .+. ...++|++|+......+.|.--..++-.++.... -++. .+ ....
T Consensus 109 ~--~--~~~~~i~~~~~~m~~gm~---~dl-~~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~-~~~~-~~---~~~~ 175 (343)
T 3vj8_A 109 A--E--KYQTVIADICRRMGIGMA---EFL-DKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEF-EDPL-VG---EDTE 175 (343)
T ss_dssp C--H--HHHHHHHHHHHHHHHHHH---HGG-GCCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTS-SCHH-HH---HCHH
T ss_pred H--H--HHHHHHHHHHHHHHHHHH---Hhc-cCCCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCC-ccch-hh---hHHH
Confidence 0 0 011122333444555553 222 2567899999888888887766666555654321 1111 10 1122
Q ss_pred HHHHHHHHHHHhcCCcchhhhhhcCCC--CchhhHHHHhcCCCHH---------HHHHHHHHHHHHHHHHHHHhhcCCCC
Q 008206 459 IIRSSSLIARLDDDVHTYKVEQERGDA--PSSVECYVQQYGVSEE---------EACNKIKGMVEIEWMNINEEIQDPNH 527 (574)
Q Consensus 459 i~~~~~~i~RL~NDI~S~~~E~~rG~~--~n~V~cyMke~g~S~e---------eA~~~i~~~ie~~wk~ln~e~l~~~~ 527 (574)
.....+...-+.|=+........+|-+ +.- .|.++|++.+ .+..-+..++..+..-+.+..--...
T Consensus 176 ~A~~lG~AlQltNilRDv~eD~~~gR~YlP~e---~l~~~g~~~~dl~~~~~~~~~~~~l~~l~~~A~~~~~~a~~~~~~ 252 (343)
T 3vj8_A 176 RANSMGLFLQKTNIIRDYLEDQQGGREFWPQE---VWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSR 252 (343)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHTTCCCSCHH---HHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhCCCeeCCHH---HHHHcCCCHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444455544444555566654 332 3667888765 34455666666666544432211123
Q ss_pred CChh-----HHHHHHHHhh-hhccccccCCCCC
Q 008206 528 PPLQ-----WLLPSLNLAR-MMVVLYQNGDGYT 554 (574)
Q Consensus 528 ~p~~-----~~~~~lN~aR-~~~~~Y~~~Dgyt 554 (574)
+|.. |.-. +-+|. .+.-+|++.|-|.
T Consensus 253 L~~~~~~~~~~ip-~~lA~~tL~~i~~~~~v~~ 284 (343)
T 3vj8_A 253 LRNQSVFNFCAIP-QVMAIATLAACYNNQQVFK 284 (343)
T ss_dssp CCCHHHHHHHHHH-HHHHHHHHHHHTTCGGGGT
T ss_pred CCccchhhHHHHH-HHHHHHHHHHHHhCCcccc
Confidence 5543 2211 22332 4445577666554
No 49
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=31.60 E-value=17 Score=41.63 Aligned_cols=42 Identities=29% Similarity=0.554 Sum_probs=15.9
Q ss_pred CCCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHHHHHh
Q 008206 23 SNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLV 64 (574)
Q Consensus 23 ~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~~lk~~vr~~l~ 64 (574)
.+|+|++|++.++.....+......+.++++.|+++||+||.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 45 (785)
T 3s9v_A 4 REFPPGFWKDDLIDSLTSSHKVAASDEKRIETLISEIKNMFR 45 (785)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHHHH
T ss_pred ccCCcccCcccccccCCCccccCcchhHHHHHHHHHHHHHhh
Confidence 368999999999985322111123457889999999999995
No 50
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=29.54 E-value=2.7e+02 Score=28.51 Aligned_cols=88 Identities=7% Similarity=-0.102 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCC----CCChHHHHhhhccccchh-hHH--HHHHHhcCCccccHHHHhhhcchhH
Q 008206 386 CMYYAKEAIKGLVKAYFVEAKWFHAKY----VPTFEECVENSTMSSGYP-MLA--VEALVGLEDMAITKRALDWAISVPK 458 (574)
Q Consensus 386 ~~~~~k~~~~~~~~a~l~EAkW~~~g~----vPT~eEYl~~~~~Ssg~~-~l~--~~~~~~mg~~~l~~e~~e~~~~~p~ 458 (574)
.+..+.+.....+.|-+.+..|...+. .+|+++|+..-..-+|.. ... ...-+..|. .+++..+. ...
T Consensus 170 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~--~~~~~~~~---l~~ 244 (367)
T 1uby_A 170 LLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGI--DSKEEHEN---AKA 244 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTC--CCHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCC--ccHHHHHH---HHH
Confidence 566777888889999999999976543 579999999866655544 221 122222231 24444333 366
Q ss_pred HHHHHHHHHHHhcCCcchhh
Q 008206 459 IIRSSSLIARLDDDVHTYKV 478 (574)
Q Consensus 459 i~~~~~~i~RL~NDI~S~~~ 478 (574)
+-...++..-+.||+..+.-
T Consensus 245 ~g~~lG~aFQI~DD~LD~~g 264 (367)
T 1uby_A 245 ILLEMGEYFQIQDDYLDCFG 264 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 77888888899999988754
No 51
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=27.80 E-value=98 Score=31.48 Aligned_cols=87 Identities=17% Similarity=0.134 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcC--CCCChHHHHhhhccccchhhHHHHHHHh-cCCccccHHHHhhhcchhHHHHH
Q 008206 386 CMYYAKEAIKGLVKAYFVEAKWFHAK--YVPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWAISVPKIIRS 462 (574)
Q Consensus 386 ~~~~~k~~~~~~~~a~l~EAkW~~~g--~vPT~eEYl~~~~~Ssg~~~l~~~~~~~-mg~~~l~~e~~e~~~~~p~i~~~ 462 (574)
.+..+.+....++.|-..+..|.... ..||.++|+..-..-+|.....+...-+ ++. .+++ . ...-.+-+.
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~-~---~~l~~~g~~ 205 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSP--SSHH-G---HSLVPFINL 205 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCC--C----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CcHH-H---HHHHHHHHH
Confidence 45667778888999999999997655 5789999999866655544332221111 111 2222 1 234677888
Q ss_pred HHHHHHHhcCCcchhh
Q 008206 463 SSLIARLDDDVHTYKV 478 (574)
Q Consensus 463 ~~~i~RL~NDI~S~~~ 478 (574)
.++..-+.||+..+.-
T Consensus 206 lG~aFQi~DD~ld~~~ 221 (340)
T 2e8v_A 206 LGIIYQIRDDYLNLKD 221 (340)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccC
Confidence 8999999999988754
No 52
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=26.62 E-value=2.3e+02 Score=28.10 Aligned_cols=85 Identities=14% Similarity=0.143 Sum_probs=58.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHh-cCCccccHHHHhhhcchhHHHHHH
Q 008206 385 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWAISVPKIIRSS 463 (574)
Q Consensus 385 ~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~-mg~~~l~~e~~e~~~~~p~i~~~~ 463 (574)
.....+.+.+..++.|-..+..|......||.++|+..-..-+|.....+...-+ ++. .++ ..-++-...
T Consensus 111 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~--~~~-------~l~~~g~~l 181 (301)
T 2q80_A 111 DAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD--YKE-------DLKPLLNTL 181 (301)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCS-------CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCC--ChH-------HHHHHHHHH
Confidence 3566788889999999999999987666899999999876655544332221111 122 121 235667778
Q ss_pred HHHHHHhcCCcchhh
Q 008206 464 SLIARLDDDVHTYKV 478 (574)
Q Consensus 464 ~~i~RL~NDI~S~~~ 478 (574)
++..-+.||+..+.-
T Consensus 182 G~aFQi~DD~ld~~~ 196 (301)
T 2q80_A 182 GLFFQIRDDYANLHS 196 (301)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhcC
Confidence 888888999887743
No 53
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=25.38 E-value=74 Score=31.41 Aligned_cols=93 Identities=10% Similarity=0.050 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHh--cCCccccHHHHhhhcchhHHHHHHHHHHHHhcCC
Q 008206 396 GLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDDV 473 (574)
Q Consensus 396 ~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI 473 (574)
.++.|-..+..|..+ .||.++|+..-..-+|...... ..+| ++. .+++..+. ..++-+..++..-+.||+
T Consensus 150 ~~~~GQ~lDl~~~~~--~~t~~~y~~~i~~KTa~L~~~a-~~lGailag--a~~~~~~~---l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 150 GMISGLHREEEIVDG--NTSLDFIEYVCKKKYGEMHACG-AACGAILGG--AAEEEIQK---LRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp THHHHHHHHTTCCTT--SSCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHhccCC--CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHhh
Confidence 356666666677543 7999999986444334333222 2222 122 34554433 366778888888999997
Q ss_pred cchhhhhhcCCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 008206 474 HTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNIN 519 (574)
Q Consensus 474 ~S~~~E~~rG~~~n~V~cyMke~g~S~eeA~~~i~~~ie~~wk~ln 519 (574)
.. +.|++.+.+.++.+.+-+.+.
T Consensus 222 ~~-----------------------~~~~~~~~~~~~~~~A~~~L~ 244 (274)
T 3kra_B 222 NS-----------------------HQLIDENIIGKLKELALEELG 244 (274)
T ss_dssp TT-----------------------SCCCCHHHHHHHHHHHHHHHT
T ss_pred cc-----------------------ccHHHHHHHHHHHHHHHHHHH
Confidence 11 225555666666666666554
No 54
>1nh1_A Avirulence B protein; helix bundle, avirulence protein; 2.20A {Pseudomonas syringae} SCOP: e.45.1.1 PDB: 2nud_A 2nun_A*
Probab=25.00 E-value=79 Score=31.40 Aligned_cols=72 Identities=14% Similarity=0.288 Sum_probs=47.8
Q ss_pred hcccc-chhhhccCchhHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhcC---CCCChHHH
Q 008206 344 VFGRW-EVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAK---YVPTFEEC 419 (574)
Q Consensus 344 ~~~rW-D~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~g---~vPT~eEY 419 (574)
+.+|| |+..-+..|+.|+.| +.+|+....+...+..|+ +.-|-+.|.+- .+||.+. --|+-.++
T Consensus 46 GvARWPD~~Nkd~tp~qmeYg-qSfy~~sR~aG~~IA~G~----I~sF~eLW~~A-------~~WR~Sr~~~a~~~~~~F 113 (330)
T 1nh1_A 46 GAARWPDDSSKSNTPENRAYC-QSMYNSIRSAGDEISRGG----ITSFEELWGRA-------TEWRLSKLQRGEPLYSAF 113 (330)
T ss_dssp TCCCCSSCCCCCCSHHHHHHH-HHHHHHHHHHHHHHHTTS----CCSHHHHHHHH-------HHHHHHTSCTTCTTHHHH
T ss_pred eeeccCCccccccCHHHHHHH-HHHHHHHHHhccccccCc----cccHHHHHHHH-------HHHHHhhhcccCcchHHh
Confidence 46799 444556789999765 788888888887777754 33466677643 2788777 44556666
Q ss_pred Hhhhcccc
Q 008206 420 VENSTMSS 427 (574)
Q Consensus 420 l~~~~~Ss 427 (574)
.+.|....
T Consensus 114 a~~R~~nt 121 (330)
T 1nh1_A 114 ASERTSDT 121 (330)
T ss_dssp TSBCCTTS
T ss_pred cCccCCCc
Confidence 65555433
No 55
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=24.95 E-value=1.5e+02 Score=29.76 Aligned_cols=87 Identities=10% Similarity=0.085 Sum_probs=59.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHh--cCCccccHHHHhhhcchhHHHHH
Q 008206 385 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRS 462 (574)
Q Consensus 385 ~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~ 462 (574)
..+..+.++...++.|-..+..|... ..||.++|+..-..-+|.....+ ...| ++. .+++..+. .-++-..
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~-~~~ga~lag--~~~~~~~~---l~~~g~~ 202 (325)
T 3aqb_B 130 KFHQIFSKTILEVCFGEFDQMADRFN-YPVSFTAYLRRINRKTAILIEAS-CHLGALSSQ--LDEQSTYH---IKQFGHC 202 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTC-CCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTT--CCHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHhhHHHHHHHH-HHHHHHHcC--CCHHHHHH---HHHHHHH
Confidence 35677788888999999999998643 35899999998766555543322 2222 222 34554433 3667788
Q ss_pred HHHHHHHhcCCcchhh
Q 008206 463 SSLIARLDDDVHTYKV 478 (574)
Q Consensus 463 ~~~i~RL~NDI~S~~~ 478 (574)
.++..-+.||+..+.-
T Consensus 203 lG~afQi~DD~ld~~~ 218 (325)
T 3aqb_B 203 IGMSYQIIDDILDYTS 218 (325)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhccC
Confidence 8888899999988753
No 56
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=23.20 E-value=2.8e+02 Score=27.37 Aligned_cols=133 Identities=13% Similarity=0.066 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHh--cCCccccHHHHhhhcchhHHHHHH
Q 008206 386 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSS 463 (574)
Q Consensus 386 ~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~~ 463 (574)
.+..+.+++..++.|-..+..| .++|++.-..-+|..+... ...| ++ . +++..+ ..-.+-...
T Consensus 136 ~~~~~~~~~~~~~~GQ~~dl~~--------~~~y~~~i~~KTa~L~~~a-~~~ga~la-~--~~~~~~---~l~~~g~~l 200 (289)
T 2azj_A 136 ALNTSIELWKDTSVGALRDMYD--------NSDYIRTIELKTGSLFKLS-TVLSAYAS-K--HYNTKQ---QMLDVGKYL 200 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT--------TSCHHHHHHHHTHHHHHHH-HHHHHHHT-T--CGGGHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHcchHHHHHHH-HHHHHHHc-C--CHHHHH---HHHHHHHHH
Confidence 4556667777777777666553 6889887655454443222 2222 12 2 223222 235667778
Q ss_pred HHHHHHhcCCcchhhhhh---cCCCCchhhHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHH
Q 008206 464 SLIARLDDDVHTYKVEQE---RGDAPSSVECYVQQYGVSEEEA-CNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNL 539 (574)
Q Consensus 464 ~~i~RL~NDI~S~~~E~~---rG~~~n~V~cyMke~g~S~eeA-~~~i~~~ie~~wk~ln~e~l~~~~~p~~~~~~~lN~ 539 (574)
++..-+.||+..+..+.+ ++...+...+| . ..+.++| ...+.+.++++.+.+.. + | .|.+-+....++
T Consensus 201 G~aFQi~DDilD~~~~~K~dl~~gk~Tlp~l~-~--~~g~~~a~~~~a~~~~~~A~~~L~~--l-p--~~~~~~~~L~~l 272 (289)
T 2azj_A 201 GIIYQVIDDFVDYKTKKVEEIDGSAKQLFKYY-R--EGKLEEYVRSVYLEYKQKYDELISN--I-P--FQSKYLSEIRSL 272 (289)
T ss_dssp HHHHHHHHHHHHHTTSCTTTCCTTGGGGHHHH-T--TTCHHHHHHHHHHHHHHHHHHHHHT--S-C--CCGGGHHHHHTH
T ss_pred HHHHHHHHhhhhhcCCCChhhhcCcccHHHHH-H--cCCHHHHHHHHHHHHHHHHHHHHHh--C-C--CCcHHHHHHHHH
Confidence 888889999888754321 11113566566 2 3346777 45677777877776653 1 1 223345555555
Q ss_pred hh
Q 008206 540 AR 541 (574)
Q Consensus 540 aR 541 (574)
++
T Consensus 273 ~~ 274 (289)
T 2azj_A 273 PE 274 (289)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 57
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=23.09 E-value=3.7e+02 Score=26.88 Aligned_cols=84 Identities=6% Similarity=-0.155 Sum_probs=55.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhc--CCccccHHHHhhhcchhHHHHH
Q 008206 385 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL--EDMAITKRALDWAISVPKIIRS 462 (574)
Q Consensus 385 ~~~~~~k~~~~~~~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~m--g~~~l~~e~~e~~~~~p~i~~~ 462 (574)
..+..+.++...++.|-..+..|.. +.-||.++|+..-..-+|..+... ...|. +. .+. .....+-..
T Consensus 122 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~-~~~ga~lag--~~~------~~l~~~g~~ 191 (315)
T 3tc1_A 122 LIAQALSNAVLRLSRGEIEDVFVGE-CFNSDKQKYWRILEDKTAHFIEAS-LKSMAILLN--KDA------KIYADFGLN 191 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-SCCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT--SCH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHhcchHHHHHHH-HHHHHHHcC--CCH------HHHHHHHHH
Confidence 4566777888899999999999964 346899999987555554443322 22221 22 221 123566778
Q ss_pred HHHHHHHhcCCcchhh
Q 008206 463 SSLIARLDDDVHTYKV 478 (574)
Q Consensus 463 ~~~i~RL~NDI~S~~~ 478 (574)
.++..-+.||+..+.-
T Consensus 192 lG~aFQI~DD~ld~~~ 207 (315)
T 3tc1_A 192 FGMAFQIIDDLLDITQ 207 (315)
T ss_dssp HHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhcccC
Confidence 8888888998887643
No 58
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=22.30 E-value=2.5e+02 Score=22.10 Aligned_cols=61 Identities=5% Similarity=0.056 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhcCCCCCCCCCCCCCchHHHHHHHHHHH-hcCceechh
Q 008206 72 TLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLR-QHGYKVSAD 142 (574)
Q Consensus 72 d~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~~~~~Dl~~~al~FRlLR-~hGy~vS~d 142 (574)
..+..=++...+.++|+. ++|+++++..+= .++.+. .+ ..+. ..+|.-.-.+ +.|+.++..
T Consensus 25 G~I~~~el~~~l~~~g~~---~~~~~~i~~~~D---~d~dG~--i~-~~EF-~~~~~~~~~~~~~g~~lP~~ 86 (95)
T 1c07_A 25 GFVSGLEVREIFLKTGLP---STLLAHIWSLCD---TKDCGK--LS-KDQF-ALAFHLISQKLIKGIDPPHV 86 (95)
T ss_dssp SEECHHHHHHHHHTTTCC---HHHHHHHHHHHC---TTCSSS--EE-TTTH-HHHHHHHHHHHTSCCCCCSS
T ss_pred CcEeHHHHHHHHHHcCCC---HHHHHHHHHHHC---CCCCCc--CC-HHHH-HHHHHHHHHHHHcCCCCCCc
Confidence 344556677888999976 567666554331 111111 10 2233 3333333334 789987753
No 59
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.43 E-value=88 Score=27.44 Aligned_cols=67 Identities=13% Similarity=0.303 Sum_probs=39.5
Q ss_pred HhhHHHHHHHHHHHhHhcCcCCCh-hhhhhHhhhhhhh-hccccCCC------cchhhHHHHHHHHHHHhhhhhhc
Q 008206 256 ALHRIELSEISRWWKDIDFATKLP-FARDRLVECYFWI-LGVYFEPK------YSTTRKFMTKIIAIASVIDDIYD 323 (574)
Q Consensus 256 ~~hq~El~~lsrWwk~~~l~~~l~-faRdR~ve~yfw~-~a~~feP~------~s~~Rl~laK~~~l~~viDD~fD 323 (574)
.+..+|++++.+|..+++|..... ..|| +.-.|.-| +--.|.|+ |+.+.-.-+|...|-++=--+|-
T Consensus 11 ~l~~ee~~el~~WL~~l~Ls~~~rn~rRD-FSdG~lvAEIl~~y~Pk~Vdlh~y~~~~S~~~K~~NW~~ln~kvl~ 85 (127)
T 2ee7_A 11 SVDEEALHQLYLWVDNIPLSRPKRNLSRD-FSDGVLVAEVIKFYFPKMVEMHNYVPANSLQQKLSNWGHLNRKVLK 85 (127)
T ss_dssp SCCHHHHHHHHHHHHHSCCSCCSSCHHHH-HTTSHHHHHHHHHHCTTTCCCSSCCCCSSHHHHHHHHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCCchhhh-ccchhHHHHHHHHHCcCcccccccCCCCcHHHHHHhHHHHHHHHHH
Confidence 355689999999999999854332 4454 54444333 11223355 44444455677777765444554
No 60
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=20.31 E-value=78 Score=25.05 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=20.5
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHH
Q 008206 496 YGVSEEEACNKIKGMVEIEWMNI 518 (574)
Q Consensus 496 ~g~S~eeA~~~i~~~ie~~wk~l 518 (574)
||++.+||+..+.+.+.+++...
T Consensus 6 HGl~v~eA~~~l~~~l~~~~~~~ 28 (82)
T 3fau_A 6 HGLHVDEALEHLMRVLEKKTEEF 28 (82)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999888643
Done!