BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008207
(574 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359490274|ref|XP_002269873.2| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Vitis
vinifera]
Length = 711
Score = 823 bits (2125), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/559 (76%), Positives = 468/559 (83%), Gaps = 26/559 (4%)
Query: 1 MPSIALFDGKEVKDEKKMNKKMALKDFEETEAALTEKSSDKKKSKKK-ESSKKRKE---- 55
MPS++L D V +KK K ETEA++ +K S K+ K E S E
Sbjct: 1 MPSLSLADPVSVSKDKKEKKLKVKT--LETEASMIKKESKSKRVKSDPEISGSDSEDLKK 58
Query: 56 -----------SEIEE--EEERSETSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQER 102
SEI++ E++ SETSSELGEPVN K KKK PE EE +
Sbjct: 59 KKTKKKEKRKASEIDDDNEDQMSETSSELGEPVN----SSLKAKKKKLKVPEMEEEEGK- 113
Query: 103 GESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLA 162
E+PNA+S FRIS PLREKLKSKGIE+LFPIQAMTFD +LDGSDLVGRARTGQGKTLA
Sbjct: 114 -AEENPNALSNFRISEPLREKLKSKGIEALFPIQAMTFDTILDGSDLVGRARTGQGKTLA 172
Query: 163 FVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLY 222
FVLPILESL NGP + S+KTGYGR P VLVLLPTRELA QV+ DFDVYGGA+GLTSCCLY
Sbjct: 173 FVLPILESLINGPNRGSRKTGYGRPPCVLVLLPTRELATQVYADFDVYGGAIGLTSCCLY 232
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GGAPY AQE KLK+G+D+V+GTPGRIKDHIERGNID SSLKFRVLDEADEMLRMGFVEDV
Sbjct: 233 GGAPYQAQEIKLKRGVDIVVGTPGRIKDHIERGNIDFSSLKFRVLDEADEMLRMGFVEDV 292
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
ELILGKVED +KVQTLLFSATLP WVK IS++FLK KT DLVGNEKMKASTNVRHIVL
Sbjct: 293 ELILGKVEDVSKVQTLLFSATLPGWVKEISSRFLKPTLKTADLVGNEKMKASTNVRHIVL 352
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTL 402
PCSSSARSQVIPD+IRCYSSGGRTIIFTETK+SAS+LA LLPGARALHGDIQQSQREVTL
Sbjct: 353 PCSSSARSQVIPDVIRCYSSGGRTIIFTETKDSASELAGLLPGARALHGDIQQSQREVTL 412
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
+GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN+GVAVML
Sbjct: 413 SGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNSGVAVML 472
Query: 463 YDPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEEL 522
+DPR+S++SKIERESGVKFEH+SAPQPADIAK+AGVEAA TITQVSDSVIPAFKSAAEEL
Sbjct: 473 FDPRRSNISKIERESGVKFEHVSAPQPADIAKSAGVEAAGTITQVSDSVIPAFKSAAEEL 532
Query: 523 LNNSGLSAAELLAKALAKA 541
LN SGLSA ELLAKALAKA
Sbjct: 533 LNTSGLSAVELLAKALAKA 551
>gi|255539651|ref|XP_002510890.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223550005|gb|EEF51492.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 690
Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/532 (76%), Positives = 462/532 (86%), Gaps = 4/532 (0%)
Query: 1 MPSIALFDGKEVKDEKKMNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEE 60
MPSIA+ + EKKM K+++L+ E+ E + +KK KK + +K +SE++E
Sbjct: 1 MPSIAIANNAADLKEKKMKKRISLETSEQPEEEIILSDKKEKKMKKDKKKRKAVDSELDE 60
Query: 61 EEERSETSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPL 120
E+ +SETSSEL EPVNLK++K+ KK K A E E G E E E +HPNA+S++RIS L
Sbjct: 61 ED-KSETSSELVEPVNLKTKKKNKKAKIAD-ENEDG--EVETAEEDHPNAISKYRISESL 116
Query: 121 REKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASK 180
REKLKSKGI+SLFPIQAMTFD +LDGSDLVGRARTGQGKTLAFVLPILES+TNG K S+
Sbjct: 117 REKLKSKGIQSLFPIQAMTFDDILDGSDLVGRARTGQGKTLAFVLPILESITNGHAKESR 176
Query: 181 KTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDV 240
KTGYGR PSVLVLLPTRELA QV +DF VYG ++GLTSCCLYGGA YH QE LK+G+D+
Sbjct: 177 KTGYGRPPSVLVLLPTRELASQVFDDFKVYGESLGLTSCCLYGGASYHPQEMSLKRGVDI 236
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGR+KDHIERGNI+LS LKFRVLDEADEMLRMGFVEDVELILGKVED +KVQTLLF
Sbjct: 237 VVGTPGRVKDHIERGNINLSYLKFRVLDEADEMLRMGFVEDVELILGKVEDVSKVQTLLF 296
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SATLP WVK IS++FLK+ KKTIDLVGNEKMKASTNVRHI+LPCS+SA QVIPDIIRCY
Sbjct: 297 SATLPEWVKQISSRFLKASKKTIDLVGNEKMKASTNVRHIILPCSASAIPQVIPDIIRCY 356
Query: 361 SSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
SSGGRTIIFTE +ESA++LA LL GARALHG+IQQSQREVTL+GFRSGKF+TLVATNVAA
Sbjct: 357 SSGGRTIIFTEKRESANELAGLLHGARALHGEIQQSQREVTLSGFRSGKFLTLVATNVAA 416
Query: 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSKIERESGVK 480
RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR+S++SKIERESGVK
Sbjct: 417 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNISKIERESGVK 476
Query: 481 FEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAE 532
FEHI+APQPADIA+A G AAE ITQVSDS++PAFKSAAE+LLN+SGLSA E
Sbjct: 477 FEHITAPQPADIAQAVGAVAAEKITQVSDSIVPAFKSAAEDLLNSSGLSAVE 528
>gi|356575902|ref|XP_003556075.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Glycine max]
Length = 693
Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/558 (72%), Positives = 456/558 (81%), Gaps = 28/558 (5%)
Query: 1 MPSIALFDGKEVKDEKKMNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEE 60
MPS++L D K K K +LT+ D KK +KKRK S++E+
Sbjct: 1 MPSLSLSDPDTPKPIAKKKTKTQ---------SLTDPDLDGVSGKK---TKKRKASDLEQ 48
Query: 61 E---------EERSETSSELGEP-------VNLKSEKEKKKKKKAKVEPEAGVEEQERGE 104
E + ETSS+L +P N +K+KKK K++ + + V E +
Sbjct: 49 EAMPPAAYNNDGDDETSSDLVQPEPASREDDNKNKKKKKKKVVKSEEKEQPLVTEANGEK 108
Query: 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
E PNA+S FRIS PLR+KLK KGIESLFPIQAMTFD VLDGSDLVGRARTGQGKTLAFV
Sbjct: 109 KEDPNALSNFRISEPLRQKLKEKGIESLFPIQAMTFDTVLDGSDLVGRARTGQGKTLAFV 168
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
LPILESL NGPTKAS+KTG+GR PSVLVLLPTRELA QVH DFDVYGGA+GL+SCCLYGG
Sbjct: 169 LPILESLINGPTKASRKTGFGRTPSVLVLLPTRELACQVHADFDVYGGAMGLSSCCLYGG 228
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
APY QE KL++G+D+VIGTPGR+KDHIE+GNIDLS LKFRVLDEADEMLRMGFVEDVE+
Sbjct: 229 APYQGQEIKLRRGVDIVIGTPGRVKDHIEKGNIDLSQLKFRVLDEADEMLRMGFVEDVEM 288
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344
ILGKVE+ NKVQTLLFSATLP WVK I+ +FLK DKKT DLVGN KMKAS NVRHIVLPC
Sbjct: 289 ILGKVENVNKVQTLLFSATLPDWVKQIAARFLKPDKKTADLVGNTKMKASINVRHIVLPC 348
Query: 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAG 404
+SSAR+Q+IPDIIRCYSSGGRTI+FTETKESASQLA +L GA+ALHGDIQQS REVTL+G
Sbjct: 349 TSSARAQLIPDIIRCYSSGGRTIVFTETKESASQLAGILTGAKALHGDIQQSTREVTLSG 408
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD
Sbjct: 409 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 468
Query: 465 PRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLN 524
P++S++S+IERESGVKFEH+SAPQP DIAKA EAAE I QVSDSV+PAFKSAAE+LLN
Sbjct: 469 PKRSNISRIERESGVKFEHVSAPQPDDIAKAVSGEAAEMIIQVSDSVVPAFKSAAEDLLN 528
Query: 525 NSGLSAAELLAKALAKAV 542
NSGL ELLAKALAKAV
Sbjct: 529 NSGLPVIELLAKALAKAV 546
>gi|356535937|ref|XP_003536498.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Glycine max]
Length = 697
Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/560 (71%), Positives = 451/560 (80%), Gaps = 27/560 (4%)
Query: 1 MPSIALFDGKEVKDEKKMNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEE 60
MPS++L + + NKK + +LT+ D KK +KKRK S++ E
Sbjct: 1 MPSLSLSETDTTTPKPISNKK------KPKTQSLTDPDLDGVSGKK---TKKRKASDLLE 51
Query: 61 EEER----------SETSSELGEPVNLKSEKEKKKKKKAKVEPEAG--------VEEQER 102
E ETSS+L EP E + + KKK K + V E +
Sbjct: 52 PEAMPAAYSYNNGDDETSSDLVEPEPASREDDSQNKKKKKKKVVKSEEKEQPLLVTEPKE 111
Query: 103 GESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLA 162
+ + PNA+S FRIS PLREKLK KGIESLFPIQAMTFD VLDGSDLVGRARTGQGKTLA
Sbjct: 112 EKKDDPNAISNFRISEPLREKLKEKGIESLFPIQAMTFDTVLDGSDLVGRARTGQGKTLA 171
Query: 163 FVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLY 222
FVLPILESL NGP K+++KTGYGR PSVLVLLPTRELA QVH DF+VYGGA+GL+SCCLY
Sbjct: 172 FVLPILESLINGPAKSARKTGYGRTPSVLVLLPTRELACQVHADFEVYGGAMGLSSCCLY 231
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GGAPY QE KL++G+D+VIGTPGR+KDHIE+GNIDLS LKFRVLDEADEMLRMGFVEDV
Sbjct: 232 GGAPYQGQELKLRRGVDIVIGTPGRVKDHIEKGNIDLSQLKFRVLDEADEMLRMGFVEDV 291
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E+ILGKVE+ NKVQTLLFSATLP WVK I+ KFLK DKKT DLVGN KMKASTNVRHIVL
Sbjct: 292 EMILGKVENVNKVQTLLFSATLPDWVKQIALKFLKPDKKTADLVGNTKMKASTNVRHIVL 351
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTL 402
PC+SSAR+Q+IPDIIRCYSSGGRTI+FTETKE ASQLA +L GA+ALHGDIQQS REVTL
Sbjct: 352 PCTSSARAQLIPDIIRCYSSGGRTIVFTETKECASQLAGILNGAKALHGDIQQSTREVTL 411
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
+GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML
Sbjct: 412 SGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 471
Query: 463 YDPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEEL 522
YDP++S++ +IERESGVKFEH+SAPQP DIAKA EAAE I QVSDSV+PAFKSAAEEL
Sbjct: 472 YDPKRSNIPRIERESGVKFEHVSAPQPDDIAKAVSGEAAEMIIQVSDSVVPAFKSAAEEL 531
Query: 523 LNNSGLSAAELLAKALAKAV 542
LN+SGL ELLAKALAKAV
Sbjct: 532 LNSSGLPVIELLAKALAKAV 551
>gi|7211427|gb|AAF40306.1|AF156667_1 RNA helicase [Vigna radiata]
Length = 713
Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/435 (85%), Positives = 403/435 (92%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
PNAVS+ RIS PLR KLK KGIESLFPIQAMTFD+VLDGSDLVGRARTGQGKTLAFVLPI
Sbjct: 128 PNAVSKLRISEPLRLKLKEKGIESLFPIQAMTFDLVLDGSDLVGRARTGQGKTLAFVLPI 187
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LESL NGPTK+S+KTGYGR PSVLVLLPTRELA +VH DF+VYGGA+GL+SCCLYGGAPY
Sbjct: 188 LESLINGPTKSSRKTGYGRTPSVLVLLPTRELACRVHADFEVYGGAMGLSSCCLYGGAPY 247
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
+ QE KL++G+D+VIGTPGR+KDHIERGNIDLS LKFRVLDEADEMLRMGFVEDVELILG
Sbjct: 248 NTQEIKLRRGVDIVIGTPGRVKDHIERGNIDLSQLKFRVLDEADEMLRMGFVEDVELILG 307
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
KVE+ NKVQTLLFSATLP WVKHI+ +FLK DKKT DLVGN KMKASTNVRHIVLPCS+
Sbjct: 308 KVENVNKVQTLLFSATLPDWVKHIAAQFLKPDKKTADLVGNTKMKASTNVRHIVLPCSAP 367
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRS 407
ARSQ+IPDIIRCYSSGGRTIIFTETKESASQLA LLPGARALHGDIQQ+QREVTL GFRS
Sbjct: 368 ARSQLIPDIIRCYSSGGRTIIFTETKESASQLAGLLPGARALHGDIQQAQREVTLFGFRS 427
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK 467
GKFMTLVATNVAARGLDINDVQLIIQCE PR+VE+YIHRSGRTGRAGNTGVA LYDP++
Sbjct: 428 GKFMTLVATNVAARGLDINDVQLIIQCEFPREVESYIHRSGRTGRAGNTGVAGTLYDPKR 487
Query: 468 SSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
S++SKIERESGVKFEHISAP+P DIAKA G EAAE ITQVSDSVIPAFK AEELL +SG
Sbjct: 488 SNISKIERESGVKFEHISAPRPDDIAKAVGGEAAEMITQVSDSVIPAFKETAEELLKSSG 547
Query: 528 LSAAELLAKALAKAV 542
L+ ELLAKALAKAV
Sbjct: 548 LTVVELLAKALAKAV 562
>gi|224122544|ref|XP_002318863.1| predicted protein [Populus trichocarpa]
gi|222859536|gb|EEE97083.1| predicted protein [Populus trichocarpa]
Length = 652
Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/504 (77%), Positives = 440/504 (87%), Gaps = 12/504 (2%)
Query: 59 EEEEERSETSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISV 118
+++EERSETSSELGEPVNLK + +K K + + E++E ++E PNAV+RFRIS
Sbjct: 20 DDDEERSETSSELGEPVNLKKKSKKAKVVEEE-------EDEEEVKAEDPNAVTRFRISE 72
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
PLRE LK +GIE+LFPIQA TF+ +L+G DLVGRARTGQGKTLAFVLPILESL NGP KA
Sbjct: 73 PLREALKKRGIEALFPIQARTFEDILNGCDLVGRARTGQGKTLAFVLPILESLVNGPAKA 132
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
S+KTGYGR PSVLVLLPTRELA QV EDF VYGGAVGL SCC+YGGA Y QEF LK+G+
Sbjct: 133 SRKTGYGRPPSVLVLLPTRELATQVFEDFKVYGGAVGLNSCCVYGGASYQPQEFALKRGV 192
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
D+V+GTPGRIKDHIE+GNIDLS LKFRVLDE+DEMLRMGFVEDVELILGKVED KVQTL
Sbjct: 193 DIVVGTPGRIKDHIEKGNIDLSLLKFRVLDESDEMLRMGFVEDVELILGKVEDVRKVQTL 252
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSATLP WVK+IS++FLK KKTIDLVGNEKMKASTNVRHIVLPCS++A QVIPD+I
Sbjct: 253 LFSATLPDWVKNISSRFLKPTKKTIDLVGNEKMKASTNVRHIVLPCSTAAMPQVIPDVIS 312
Query: 359 CYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
CY SGGRTIIFTE +ESA++LA LLPGARALHG+IQQS+REVTL+GFRSGKF+TLVATNV
Sbjct: 313 CYGSGGRTIIFTEKRESANELAGLLPGARALHGEIQQSKREVTLSGFRSGKFLTLVATNV 372
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSKIERESG 478
AARGLDINDVQLIIQCEPP DVEAYIHRSGRTGRAGN+GVAVMLYDPR+S++SKI+RESG
Sbjct: 373 AARGLDINDVQLIIQCEPPNDVEAYIHRSGRTGRAGNSGVAVMLYDPRRSNISKIQRESG 432
Query: 479 VKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKAL 538
VKFEHI+AP+ DIAKAAGV AAETITQVSDSVIPAFKSAAE LL+ SGLSA ELLAKAL
Sbjct: 433 VKFEHITAPRAEDIAKAAGVGAAETITQVSDSVIPAFKSAAENLLSTSGLSAVELLAKAL 492
Query: 539 AKA-----VVSAFLFSSSSNSLSL 557
AKA + S L +S N ++L
Sbjct: 493 AKATGYTEIKSRSLLTSMDNHVTL 516
>gi|224136846|ref|XP_002322430.1| predicted protein [Populus trichocarpa]
gi|222869426|gb|EEF06557.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/455 (81%), Positives = 408/455 (89%), Gaps = 5/455 (1%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
PNAV+RFRIS PLRE LK +GIE+LFPIQA TF+ +L+G DLVGRARTGQGKTLAFVLPI
Sbjct: 78 PNAVTRFRISEPLREVLKKRGIEALFPIQARTFEDILNGGDLVGRARTGQGKTLAFVLPI 137
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LESL NG KAS+KTGYGR PSVLVLLPTRELA QV +DF VYGGA+GL SCC+YGGA Y
Sbjct: 138 LESLVNGLAKASRKTGYGRPPSVLVLLPTRELATQVFDDFKVYGGAMGLDSCCVYGGASY 197
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
QEF LK+G+DVV+GTPGRIKDHIE+GNIDLS LKFRVLDEADEMLRMGFVEDVELILG
Sbjct: 198 QPQEFALKRGVDVVVGTPGRIKDHIEKGNIDLSLLKFRVLDEADEMLRMGFVEDVELILG 257
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
KV+D NKVQTLLFSATLP WVK IS+KFLK KKTIDLVGNEKMKASTNVRHIVLPCS+S
Sbjct: 258 KVKDVNKVQTLLFSATLPGWVKQISSKFLKPTKKTIDLVGNEKMKASTNVRHIVLPCSTS 317
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRS 407
A QVIPDIIRCY+SGGRTIIFTE +ESA++L+ LLPGARALHG+IQQSQREVTL+GFRS
Sbjct: 318 AIPQVIPDIIRCYASGGRTIIFTEKRESANELSGLLPGARALHGEIQQSQREVTLSGFRS 377
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK 467
GKF+TLVATNVAARGLDINDVQLIIQCEPP DVEAYIHRSGRTGRAGN+GVAVMLYDPR+
Sbjct: 378 GKFLTLVATNVAARGLDINDVQLIIQCEPPNDVEAYIHRSGRTGRAGNSGVAVMLYDPRR 437
Query: 468 SSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
S++SKI+RESGVKFEHI+AP+ DIAKA GVEAAETI QVSDSVIPAFKSAAE+LLN SG
Sbjct: 438 SNISKIQRESGVKFEHITAPKAEDIAKAVGVEAAETIIQVSDSVIPAFKSAAEDLLNTSG 497
Query: 528 LSAAELLAKALAKA-----VVSAFLFSSSSNSLSL 557
LSA ELLAKALAKA + S L SS N ++L
Sbjct: 498 LSAVELLAKALAKATGYTEIKSRSLLSSMENHVTL 532
>gi|296084100|emb|CBI24488.3| unnamed protein product [Vitis vinifera]
Length = 547
Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/404 (88%), Positives = 382/404 (94%)
Query: 138 MTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197
MTFD +LDGSDLVGRARTGQGKTLAFVLPILESL NGP + S+KTGYGR P VLVLLPTR
Sbjct: 1 MTFDTILDGSDLVGRARTGQGKTLAFVLPILESLINGPNRGSRKTGYGRPPCVLVLLPTR 60
Query: 198 ELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI 257
ELA QV+ DFDVYGGA+GLTSCCLYGGAPY AQE KLK+G+D+V+GTPGRIKDHIERGNI
Sbjct: 61 ELATQVYADFDVYGGAIGLTSCCLYGGAPYQAQEIKLKRGVDIVVGTPGRIKDHIERGNI 120
Query: 258 DLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLK 317
D SSLKFRVLDEADEMLRMGFVEDVELILGKVED +KVQTLLFSATLP WVK IS++FLK
Sbjct: 121 DFSSLKFRVLDEADEMLRMGFVEDVELILGKVEDVSKVQTLLFSATLPGWVKEISSRFLK 180
Query: 318 SDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESAS 377
KT DLVGNEKMKASTNVRHIVLPCSSSARSQVIPD+IRCYSSGGRTIIFTETK+SAS
Sbjct: 181 PTLKTADLVGNEKMKASTNVRHIVLPCSSSARSQVIPDVIRCYSSGGRTIIFTETKDSAS 240
Query: 378 QLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
+LA LLPGARALHGDIQQSQREVTL+GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP
Sbjct: 241 ELAGLLPGARALHGDIQQSQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 300
Query: 438 RDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSKIERESGVKFEHISAPQPADIAKAAG 497
RDVEAYIHRSGRTGRAGN+GVAVML+DPR+S++SKIERESGVKFEH+SAPQPADIAK+AG
Sbjct: 301 RDVEAYIHRSGRTGRAGNSGVAVMLFDPRRSNISKIERESGVKFEHVSAPQPADIAKSAG 360
Query: 498 VEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKA 541
VEAA TITQVSDSVIPAFKSAAEELLN SGLSA ELLAKALAKA
Sbjct: 361 VEAAGTITQVSDSVIPAFKSAAEELLNTSGLSAVELLAKALAKA 404
>gi|357444227|ref|XP_003592391.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355481439|gb|AES62642.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 641
Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/453 (80%), Positives = 399/453 (88%), Gaps = 16/453 (3%)
Query: 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVL 165
E PN +S+F+IS PLREKLK KGIESLFPIQAMTFD++L G DLVGRARTGQGKTLAFVL
Sbjct: 40 EDPNGISKFKISEPLREKLKEKGIESLFPIQAMTFDIILQGCDLVGRARTGQGKTLAFVL 99
Query: 166 PILESLTNGPTKA--------------SKKTGYGRAP--SVLVLLPTRELAKQVHEDFDV 209
PILES+TNG K S+K GYG P SVLVLLPTRELA QV+ DF+V
Sbjct: 100 PILESVTNGKAKETNAKTKETNGNARESRKGGYGGPPKPSVLVLLPTRELACQVNADFEV 159
Query: 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269
YGGA+GLTSCCLYGGAPY AQE KL++G+D+VIGTPGRIKDHI RG+IDLS LKFRVLDE
Sbjct: 160 YGGAMGLTSCCLYGGAPYKAQEIKLERGVDIVIGTPGRIKDHIVRGSIDLSQLKFRVLDE 219
Query: 270 ADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNE 329
ADEMLRMGFVEDVELILGKV++ ++VQTLLFSATLP WVK+I+ +FLK DK+T DLVGN
Sbjct: 220 ADEMLRMGFVEDVELILGKVKNVDQVQTLLFSATLPEWVKNIAKRFLKEDKQTADLVGNT 279
Query: 330 KMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARAL 389
KMKAST+VRH +LPC+ +ARSQ+IPDIIRCYSS GRTIIFTETKESASQLA+LLPGARAL
Sbjct: 280 KMKASTSVRHYILPCTGAARSQLIPDIIRCYSSEGRTIIFTETKESASQLAELLPGARAL 339
Query: 390 HGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 449
HGDIQQ+QREVTL+GFR GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR
Sbjct: 340 HGDIQQAQREVTLSGFRYGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 399
Query: 450 TGRAGNTGVAVMLYDPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSD 509
TGRAGNTGVAVMLYDPR+S++ KIERESGVKFEHISAPQ DIAKA G EAAE I QVSD
Sbjct: 400 TGRAGNTGVAVMLYDPRRSNIPKIERESGVKFEHISAPQANDIAKAVGREAAEMIMQVSD 459
Query: 510 SVIPAFKSAAEELLNNSGLSAAELLAKALAKAV 542
SVIPAFKSAAEELLNNSGLS +L AKALAKAV
Sbjct: 460 SVIPAFKSAAEELLNNSGLSVVDLFAKALAKAV 492
>gi|449530205|ref|XP_004172086.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Cucumis
sativus]
Length = 696
Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/507 (72%), Positives = 426/507 (84%), Gaps = 6/507 (1%)
Query: 57 EIEEEEERSETSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRI 116
E+ ++ +RSETSSELGEPVN +S+ K+KK K + ++ E+E+PNAV++FRI
Sbjct: 53 EVADDGDRSETSSELGEPVNSRSKSGKEKKSSKKAKVVDSEDDDVEKEAENPNAVTQFRI 112
Query: 117 SVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPT 176
S PL+ KL+ KGI SLFPIQA TFD V DGSDLVGRARTGQGKTLAFVLPILESL NGP
Sbjct: 113 SEPLKAKLREKGITSLFPIQATTFDTVYDGSDLVGRARTGQGKTLAFVLPILESLVNGPY 172
Query: 177 KASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKK 236
K+S+ TGYGR+PSV+VLLPTRELA QV EDF YG +GL SCCL GG Y QE LK+
Sbjct: 173 KSSRVTGYGRSPSVIVLLPTRELADQVFEDFKFYGRTLGLDSCCLCGGLQYGPQEIALKR 232
Query: 237 GIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQ 296
G+D+V+GTPGR+KDHI R NIDL SLKFRVLDEADEML MGFV+DVE ILGKV D NKVQ
Sbjct: 233 GVDIVVGTPGRVKDHINRNNIDLRSLKFRVLDEADEMLNMGFVDDVEFILGKVADVNKVQ 292
Query: 297 TLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDI 356
TLLFSATLP WVK+I+++FLK+ KKT+DLVGNEKMKAS +VRHIV+PCS + RS++IPDI
Sbjct: 293 TLLFSATLPDWVKNITSRFLKASKKTVDLVGNEKMKASKDVRHIVIPCSDTERSRLIPDI 352
Query: 357 IRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
IRCYSSGGRTIIFTETKESAS+LA LLPGAR LHGDIQQSQR VT++GFRSGKF+ LVAT
Sbjct: 353 IRCYSSGGRTIIFTETKESASELAGLLPGARPLHGDIQQSQRSVTISGFRSGKFLILVAT 412
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS-VSKIER 475
NVAARGLDINDVQLIIQCE P+D+EAYIHRSGRTGRAGNTGVAV LYDPRKS +++IER
Sbjct: 413 NVAARGLDINDVQLIIQCEAPKDIEAYIHRSGRTGRAGNTGVAVTLYDPRKSGRIARIER 472
Query: 476 ESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLA 535
+SGVKFEH+SAPQP DIA++AG AAE++TQVSDSVIP FKSAAEE++N+S LSA ELLA
Sbjct: 473 DSGVKFEHLSAPQPIDIARSAGASAAESVTQVSDSVIPPFKSAAEEMVNSSTLSAVELLA 532
Query: 536 KALAKA-----VVSAFLFSSSSNSLSL 557
KALAK + S L +S N ++L
Sbjct: 533 KALAKLSGYTEIKSRSLLTSMENYVTL 559
>gi|449451928|ref|XP_004143712.1| PREDICTED: uncharacterized protein LOC101209696 [Cucumis sativus]
Length = 1247
Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/507 (72%), Positives = 426/507 (84%), Gaps = 6/507 (1%)
Query: 57 EIEEEEERSETSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRI 116
E+ ++ +RSETSSELGEPVN +S+ K+KK K + ++ E+E+PNAV++FRI
Sbjct: 604 EVADDGDRSETSSELGEPVNSRSKSGKEKKSSKKAKVVDSEDDDVEKEAENPNAVTQFRI 663
Query: 117 SVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPT 176
S PL+ KL+ KGI SLFPIQA TFD V DGSDLVGRARTGQGKTLAFVLPILESL NGP
Sbjct: 664 SEPLKAKLREKGITSLFPIQATTFDTVYDGSDLVGRARTGQGKTLAFVLPILESLVNGPY 723
Query: 177 KASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKK 236
K+S+ TGYGR+PSV+VLLPTRELA QV EDF YG +GL SCCL GG Y QE LK+
Sbjct: 724 KSSRVTGYGRSPSVIVLLPTRELADQVFEDFKFYGRTLGLDSCCLCGGLQYGPQEIALKR 783
Query: 237 GIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQ 296
G+D+V+GTPGR+KDHI R NIDL SLKFRVLDEADEML MGFV+DVE ILGKV D NKVQ
Sbjct: 784 GVDIVVGTPGRVKDHINRNNIDLRSLKFRVLDEADEMLNMGFVDDVEFILGKVADVNKVQ 843
Query: 297 TLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDI 356
TLLFSATLP WVK+I+++FLK+ KKT+DLVGNEKMKAS +VRHIV+PCS + RS++IPDI
Sbjct: 844 TLLFSATLPDWVKNITSRFLKASKKTVDLVGNEKMKASKDVRHIVIPCSDTERSRLIPDI 903
Query: 357 IRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
IRCYSSGGRTIIFTETKESAS+LA LLPGAR LHGDIQQSQR VT++GFRSGKF+ LVAT
Sbjct: 904 IRCYSSGGRTIIFTETKESASELAGLLPGARPLHGDIQQSQRSVTISGFRSGKFLILVAT 963
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS-VSKIER 475
NVAARGLDINDVQLIIQCE P+D+EAYIHRSGRTGRAGNTGVAV LYDPRKS +++IER
Sbjct: 964 NVAARGLDINDVQLIIQCEAPKDIEAYIHRSGRTGRAGNTGVAVTLYDPRKSGRIARIER 1023
Query: 476 ESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLA 535
+SGVKFEH+SAPQP DIA++AG AAE++TQVSDSVIP FKSAAEE++N+S LSA ELLA
Sbjct: 1024 DSGVKFEHLSAPQPIDIARSAGASAAESVTQVSDSVIPPFKSAAEEMVNSSTLSAVELLA 1083
Query: 536 KALAKA-----VVSAFLFSSSSNSLSL 557
KALAK + S L +S N ++L
Sbjct: 1084 KALAKLSGYTEIKSRSLLTSMENYVTL 1110
>gi|75319612|sp|Q41382.1|RH7_SPIOL RecName: Full=DEAD-box ATP-dependent RNA helicase 7
gi|1488647|emb|CAA68193.1| RNA helicase [Spinacia oleracea]
Length = 685
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/457 (76%), Positives = 399/457 (87%), Gaps = 6/457 (1%)
Query: 85 KKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVL 144
K KKAKV EA VE +E PN++S FRIS PL++ L SKGI++LFPIQAMTFD V+
Sbjct: 89 KPKKAKVMEEAVVE------AEDPNSLSNFRISKPLKDVLISKGIKALFPIQAMTFDNVI 142
Query: 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204
DG DLVGRARTGQGKTLAFVLPI+ESL NG TK +++G+GR PSVLVLLPTRELA QV
Sbjct: 143 DGCDLVGRARTGQGKTLAFVLPIVESLVNGRTKDLRRSGHGRLPSVLVLLPTRELATQVL 202
Query: 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264
DF VYGGAVGLT+C +YGGAP+H+Q L +G+D+V+GTPGR+KD +E+G + L SL F
Sbjct: 203 ADFQVYGGAVGLTACSVYGGAPFHSQISSLTRGVDIVVGTPGRVKDLLEKGVLKLGSLLF 262
Query: 265 RVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
RVLDEADEML+MGFV+DVELILGKV+ +KVQTLLFSATLPSWVK IST+FLKS KKT+D
Sbjct: 263 RVLDEADEMLKMGFVDDVELILGKVDHVSKVQTLLFSATLPSWVKQISTRFLKSAKKTVD 322
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP 384
LV ++KMKAS +VRHIV+PCS+SAR +IPDIIRCY SGGR+IIFTETKESASQLA LL
Sbjct: 323 LVSDQKMKASISVRHIVIPCSASARPDLIPDIIRCYGSGGRSIIFTETKESASQLAGLLT 382
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444
GAR LHGDIQQ+QREVTL GFR+GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVE YI
Sbjct: 383 GARPLHGDIQQTQREVTLKGFRTGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEDYI 442
Query: 445 HRSGRTGRAGNTGVAVMLYDPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETI 504
HRSGRTGRAGNTGVAVMLYDP++SSV+KIERESGVKFEH+SAPQP D+AKA G+EAA I
Sbjct: 443 HRSGRTGRAGNTGVAVMLYDPKRSSVTKIERESGVKFEHLSAPQPVDVAKAVGIEAAAAI 502
Query: 505 TQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKA 541
Q+SDSVIPAFK AAEELL+ SGLSA ++L+KALAKA
Sbjct: 503 LQISDSVIPAFKDAAEELLSTSGLSAVDILSKALAKA 539
>gi|297797185|ref|XP_002866477.1| hypothetical protein ARALYDRAFT_496396 [Arabidopsis lyrata subsp.
lyrata]
gi|297312312|gb|EFH42736.1| hypothetical protein ARALYDRAFT_496396 [Arabidopsis lyrata subsp.
lyrata]
Length = 669
Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/445 (77%), Positives = 392/445 (88%), Gaps = 3/445 (0%)
Query: 96 GVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRART 155
GVE+ E ++PNAVS FRIS PLREKLK+KGIE+LFPIQA TFDMVLDG+DLVGRART
Sbjct: 86 GVEDVE---VDNPNAVSNFRISAPLREKLKAKGIEALFPIQATTFDMVLDGADLVGRART 142
Query: 156 GQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG 215
GQGKTLAFVLPILESL NGP K +K GY RAPSVLVLLPTRELAKQV DFD YGG++G
Sbjct: 143 GQGKTLAFVLPILESLVNGPAKNKRKMGYARAPSVLVLLPTRELAKQVAADFDAYGGSLG 202
Query: 216 LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275
L+SCC+YGG Y AQE KL++G+D+V+GTPGRIKDHIER NIDLS L+FRVLDEADEMLR
Sbjct: 203 LSSCCIYGGDSYTAQENKLRRGVDIVVGTPGRIKDHIERQNIDLSHLQFRVLDEADEMLR 262
Query: 276 MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335
MGFVEDVELILGKVED KVQTLLFSATLPSWVK+IS +FLK D+KTIDLVGN+KMKAS
Sbjct: 263 MGFVEDVELILGKVEDPTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASN 322
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQ 395
+VRHI +PC+ +A +++IPDII CYSSGG+TIIF E K S+L+ LL G+RALHG+I Q
Sbjct: 323 SVRHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAEKKNEVSELSGLLAGSRALHGEIPQ 382
Query: 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN 455
+QREVTLAGFR+GKF TLVATNVAARGLDINDVQLIIQCEPPR+VEAYIHRSGRTGRAGN
Sbjct: 383 AQREVTLAGFRNGKFSTLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGN 442
Query: 456 TGVAVMLYDPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAF 515
TGVAV LY+ RKSSVS+IE+E+G+KFE+ISAPQP DIA+A G+EAAE I +V DSV+PAF
Sbjct: 443 TGVAVTLYESRKSSVSRIEKEAGIKFEYISAPQPDDIARAVGMEAAENIKKVCDSVVPAF 502
Query: 516 KSAAEELLNNSGLSAAELLAKALAK 540
AA+ELL +SGLSA LLAKALAK
Sbjct: 503 LGAAKELLESSGLSAEVLLAKALAK 527
>gi|15241726|ref|NP_201025.1| DEAD-box ATP-dependent RNA helicase 7 [Arabidopsis thaliana]
gi|108861902|sp|Q39189.2|RH7_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 7
gi|8809632|dbj|BAA97183.1| RNA helicase [Arabidopsis thaliana]
gi|15810145|gb|AAL07216.1| putative RNA helicase [Arabidopsis thaliana]
gi|30793911|gb|AAP40408.1| putative DEAD/DEAH box RNA helicase PRH75 [Arabidopsis thaliana]
gi|332010196|gb|AED97579.1| DEAD-box ATP-dependent RNA helicase 7 [Arabidopsis thaliana]
Length = 671
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/445 (76%), Positives = 393/445 (88%), Gaps = 3/445 (0%)
Query: 96 GVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRART 155
GVE+ E ++PNAVS+FRIS PLREKLK+ GIE+LFPIQA TFDMVLDG+DLVGRART
Sbjct: 86 GVEDVE---VDNPNAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRART 142
Query: 156 GQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG 215
GQGKTLAFVLPILESL NGP K+ +K GYGR+PSVLVLLPTRELAKQV DFD YGG++G
Sbjct: 143 GQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLG 202
Query: 216 LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275
L+SCCLYGG Y QE KLK+G+D+V+GTPGRIKDHIER N+D S L+FRVLDEADEMLR
Sbjct: 203 LSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLR 262
Query: 276 MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335
MGFVEDVELILGKVED+ KVQTLLFSATLPSWVK+IS +FLK D+KTIDLVGN+KMKAS
Sbjct: 263 MGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASN 322
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQ 395
+VRHI +PC+ +A +++IPDII CYSSGG+TIIF ETK S+L+ LL G+RALHG+I Q
Sbjct: 323 SVRHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLDGSRALHGEIPQ 382
Query: 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN 455
SQREVTLAGFR+GKF TLVATNVAARGLDINDVQLIIQCEPPR+VEAYIHRSGRTGRAGN
Sbjct: 383 SQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGN 442
Query: 456 TGVAVMLYDPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAF 515
TGVAV LYD RKSSVS+IE+E+G+KFEH++APQP +IA++ G+EAAE + QV DSV+PAF
Sbjct: 443 TGVAVTLYDSRKSSVSRIEKEAGIKFEHLAAPQPDEIARSGGMEAAEKVKQVCDSVVPAF 502
Query: 516 KSAAEELLNNSGLSAAELLAKALAK 540
AA+ELL SGLSA LLAKALAK
Sbjct: 503 LEAAKELLETSGLSAEVLLAKALAK 527
>gi|14517482|gb|AAK62631.1| AT5g62190/mmi9_10 [Arabidopsis thaliana]
Length = 671
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/445 (76%), Positives = 392/445 (88%), Gaps = 3/445 (0%)
Query: 96 GVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRART 155
GVE+ E ++PNAVS+FRI PLREKLK+ GIE+LFPIQA TFDMVLDG+DLVGRART
Sbjct: 86 GVEDVE---VDNPNAVSKFRIPAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRART 142
Query: 156 GQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG 215
GQGKTLAFVLPILESL NGP K+ +K GYGR+PSVLVLLPTRELAKQV DFD YGG++G
Sbjct: 143 GQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDEYGGSLG 202
Query: 216 LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275
L+SCCLYGG Y QE KLK+G+D+V+GTPGRIKDHIER N+D S L+FRVLDEADEMLR
Sbjct: 203 LSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLR 262
Query: 276 MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335
MGFVEDVELILGKVED+ KVQTLLFSATLPSWVK+IS +FLK D+KTIDLVGN+KMKAS
Sbjct: 263 MGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASN 322
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQ 395
+VRHI +PC+ +A +++IPDII CYSSGG+TIIF ETK S+L+ LL G+RALHG+I Q
Sbjct: 323 SVRHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLDGSRALHGEIPQ 382
Query: 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN 455
SQREVTLAGFR+GKF TLVATNVAARGLDINDVQLIIQCEPPR+VEAYIHRSGRTGRAGN
Sbjct: 383 SQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGN 442
Query: 456 TGVAVMLYDPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAF 515
TGVAV LYD RKSSVS+IE+E+G+KFEH++APQP +IA++ G+EAAE + QV DSV+PAF
Sbjct: 443 TGVAVTLYDSRKSSVSRIEKEAGIKFEHLAAPQPDEIARSGGMEAAEKVKQVCDSVVPAF 502
Query: 516 KSAAEELLNNSGLSAAELLAKALAK 540
AA+ELL SGLSA LLAKALAK
Sbjct: 503 LEAAKELLETSGLSAEVLLAKALAK 527
>gi|1488521|emb|CAA68194.1| RNA helicase [Arabidopsis thaliana]
Length = 671
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/445 (76%), Positives = 390/445 (87%), Gaps = 3/445 (0%)
Query: 96 GVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRART 155
GVE+ E ++PNAVS+FRIS PLREKLK+ GIE+LFPIQA TFDMVLDG+DLVGRART
Sbjct: 86 GVEDVE---VDNPNAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRART 142
Query: 156 GQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG 215
GQGKTLAFVLPILESL NGP K+ +K GYGR+PSVLVLLPTRELAKQV DFD YGG++G
Sbjct: 143 GQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLG 202
Query: 216 LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275
L+SCCLYGG QE KLK+G+D+V+GTPGRIKDHIER N+D S KFRVLDEADEMLR
Sbjct: 203 LSSCCLYGGDSIPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYFKFRVLDEADEMLR 262
Query: 276 MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335
MGFVEDVELILGKVED+ KVQTLLFSATLPSWVK+IS +FLK D+KTIDLVGN+KMKAS
Sbjct: 263 MGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASN 322
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQ 395
+VRHI +PC+ +A +++IPDII CYSSGG+TIIF ETK S+L+ LL G+RALHG+I Q
Sbjct: 323 SVRHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLDGSRALHGEIPQ 382
Query: 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN 455
SQREVTLAGFR+GKF TLVATNVAARGLDINDVQLIIQCEPPR+VEAYIHRSGRTGRAGN
Sbjct: 383 SQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGN 442
Query: 456 TGVAVMLYDPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAF 515
TGV V LYD RKSSVS+IE+E+G+KFEH++APQP +IA++ G+EAAE + QV DSV+PAF
Sbjct: 443 TGVPVTLYDSRKSSVSRIEKEAGIKFEHLAAPQPDEIARSGGMEAAEKVKQVCDSVVPAF 502
Query: 516 KSAAEELLNNSGLSAAELLAKALAK 540
AA+ELL SGLSA LLAKALAK
Sbjct: 503 LEAAKELLETSGLSAEVLLAKALAK 527
>gi|115480217|ref|NP_001063702.1| Os09g0520700 [Oryza sativa Japonica Group]
gi|75322251|sp|Q650T9.1|RH7_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 7
gi|52076165|dbj|BAD46678.1| putative RNA helicase [Oryza sativa Japonica Group]
gi|113631935|dbj|BAF25616.1| Os09g0520700 [Oryza sativa Japonica Group]
Length = 696
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/436 (75%), Positives = 385/436 (88%), Gaps = 1/436 (0%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
PNA++ FRIS LREKLKSKGI++LFPIQA TFD+VLDG DLVGRARTGQGKTLAFVLPI
Sbjct: 114 PNALANFRISESLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPI 173
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LESL NG KAS++T YGR P+VLVLLPTRELAKQVH DF YG GL++CC+YGG+ Y
Sbjct: 174 LESLVNGTHKASRRTDYGRPPTVLVLLPTRELAKQVHTDFAFYGATFGLSACCVYGGSDY 233
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
+QE ++KG+D+V+GTPGR+KD +E+G ++ SLKFRVLDEADEML MGFV+DVELILG
Sbjct: 234 RSQEMAIRKGVDIVVGTPGRVKDFVEKGTLNFRSLKFRVLDEADEMLNMGFVDDVELILG 293
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
KVED KVQTLLFSAT+P WVK +S +FLKS KKT+DLVG+EK+KAS +VRH+ LPC+ +
Sbjct: 294 KVEDVTKVQTLLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLKASASVRHLALPCNRA 353
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRS 407
AR+QVIPDIIRCYS GGRTIIFTETKESAS L+ L+ G+RALHGD+ Q+QREV LAGFRS
Sbjct: 354 ARAQVIPDIIRCYSRGGRTIIFTETKESASDLSGLIAGSRALHGDVAQAQREVILAGFRS 413
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR- 466
GKF+ LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML++PR
Sbjct: 414 GKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFEPRY 473
Query: 467 KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNS 526
K +V++IERESGVKFEHISAPQP D+A++AG EAAE I+ VSDSVIP F+ AE+LLN+S
Sbjct: 474 KFNVNRIERESGVKFEHISAPQPTDVAQSAGTEAAEAISSVSDSVIPVFREQAEQLLNSS 533
Query: 527 GLSAAELLAKALAKAV 542
G+SA +LLAKALAKAV
Sbjct: 534 GMSAVDLLAKALAKAV 549
>gi|357159473|ref|XP_003578458.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Brachypodium
distachyon]
Length = 694
Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/436 (76%), Positives = 387/436 (88%), Gaps = 1/436 (0%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
PNA++ FRIS PL++KLKSKGI +LFPIQA TF +VLDG DLVGRARTGQGKTLAFVLPI
Sbjct: 117 PNALANFRISEPLKQKLKSKGINALFPIQATTFGLVLDGHDLVGRARTGQGKTLAFVLPI 176
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LESL NGP KA+++T YGR PSVLVLLPTRELA QVH DF+ YGGA GL++CC YGG+ Y
Sbjct: 177 LESLVNGPHKATRRTDYGRLPSVLVLLPTRELANQVHADFEFYGGAFGLSTCCAYGGSHY 236
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
QE ++KG+D+V+GTPGR+KD I +G ++L SLKFRVLDEADEML MGFV+DVELILG
Sbjct: 237 RPQEMAMRKGVDIVVGTPGRVKDFIVKGTLNLKSLKFRVLDEADEMLNMGFVDDVELILG 296
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
KVED KVQTLLFSATLP WVK +S +FLK+DKKT+DLVGNEKMKAS++V+H+ LPC+ +
Sbjct: 297 KVEDVTKVQTLLFSATLPEWVKKLSMRFLKADKKTVDLVGNEKMKASSSVKHLALPCNRA 356
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRS 407
ARSQ+IPDII+CYS GGRTIIFTETKESAS+L+ L+PG+RALHGDI Q+QREV +AGFRS
Sbjct: 357 ARSQIIPDIIKCYSRGGRTIIFTETKESASELSGLIPGSRALHGDIAQAQREVVIAGFRS 416
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR- 466
GKF+ LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML++PR
Sbjct: 417 GKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFEPRY 476
Query: 467 KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNS 526
K SV++IERESGVKFEHISAPQP D+A++AG EAA+ I VSDSVIP F+ AEELL++S
Sbjct: 477 KYSVTRIERESGVKFEHISAPQPTDVAQSAGNEAADAIASVSDSVIPVFRQQAEELLSSS 536
Query: 527 GLSAAELLAKALAKAV 542
+SA +LLAKALAKAV
Sbjct: 537 SMSAVDLLAKALAKAV 552
>gi|414590005|tpg|DAA40576.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 704
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/420 (75%), Positives = 370/420 (88%), Gaps = 1/420 (0%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
PNA++ FRIS PLR+ L+SKGI++LFPIQA TFD+VLDGSDLVGRARTGQGKTLAFVLPI
Sbjct: 122 PNALTNFRISEPLRQSLRSKGIKALFPIQATTFDLVLDGSDLVGRARTGQGKTLAFVLPI 181
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LESL NG KAS++T +GR PSVLVLLPTRELA QVH DF+ YG GL++CC+YGG+PY
Sbjct: 182 LESLVNGANKASRRTEHGRTPSVLVLLPTRELANQVHADFEFYGATFGLSACCVYGGSPY 241
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
QE L++G+D+V+GTPGRIKD I +G ++L LKFRVLDEADEML MGFV+DVELILG
Sbjct: 242 RPQEMALRRGVDIVVGTPGRIKDFIVKGTLNLKCLKFRVLDEADEMLNMGFVDDVELILG 301
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
KVEDA KVQTLLFSATLP WV +S +FLK D+KT+DLVGNEK+KAS +V+H+ LPC+ +
Sbjct: 302 KVEDATKVQTLLFSATLPDWVNKLSMRFLKVDRKTVDLVGNEKLKASASVKHLALPCNKA 361
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRS 407
AR+Q+IPDIIRCYS GGRTIIFTETK+SAS+L+ L+PG+RALHGD+ Q+QREV LAGFRS
Sbjct: 362 ARAQLIPDIIRCYSHGGRTIIFTETKDSASELSGLIPGSRALHGDVVQAQREVILAGFRS 421
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR- 466
GKF LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY+PR
Sbjct: 422 GKFQVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYEPRY 481
Query: 467 KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNS 526
K SVS++ERESGVKFEHISAPQP D+A++AG EAA+ I VSDSVIP F+ AE+LL++S
Sbjct: 482 KYSVSRLERESGVKFEHISAPQPTDVAQSAGSEAADAIASVSDSVIPVFRQQAEQLLSSS 541
>gi|414590004|tpg|DAA40575.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 671
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/420 (75%), Positives = 370/420 (88%), Gaps = 1/420 (0%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
PNA++ FRIS PLR+ L+SKGI++LFPIQA TFD+VLDGSDLVGRARTGQGKTLAFVLPI
Sbjct: 122 PNALTNFRISEPLRQSLRSKGIKALFPIQATTFDLVLDGSDLVGRARTGQGKTLAFVLPI 181
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LESL NG KAS++T +GR PSVLVLLPTRELA QVH DF+ YG GL++CC+YGG+PY
Sbjct: 182 LESLVNGANKASRRTEHGRTPSVLVLLPTRELANQVHADFEFYGATFGLSACCVYGGSPY 241
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
QE L++G+D+V+GTPGRIKD I +G ++L LKFRVLDEADEML MGFV+DVELILG
Sbjct: 242 RPQEMALRRGVDIVVGTPGRIKDFIVKGTLNLKCLKFRVLDEADEMLNMGFVDDVELILG 301
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
KVEDA KVQTLLFSATLP WV +S +FLK D+KT+DLVGNEK+KAS +V+H+ LPC+ +
Sbjct: 302 KVEDATKVQTLLFSATLPDWVNKLSMRFLKVDRKTVDLVGNEKLKASASVKHLALPCNKA 361
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRS 407
AR+Q+IPDIIRCYS GGRTIIFTETK+SAS+L+ L+PG+RALHGD+ Q+QREV LAGFRS
Sbjct: 362 ARAQLIPDIIRCYSHGGRTIIFTETKDSASELSGLIPGSRALHGDVVQAQREVILAGFRS 421
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR- 466
GKF LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY+PR
Sbjct: 422 GKFQVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYEPRY 481
Query: 467 KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNS 526
K SVS++ERESGVKFEHISAPQP D+A++AG EAA+ I VSDSVIP F+ AE+LL++S
Sbjct: 482 KYSVSRLERESGVKFEHISAPQPTDVAQSAGSEAADAIASVSDSVIPVFRQQAEQLLSSS 541
>gi|110430646|gb|ABG73436.1| DEAD/DEAH box helicase family protein [Oryza brachyantha]
Length = 688
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/423 (75%), Positives = 370/423 (87%), Gaps = 2/423 (0%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
PNA++ FRIS PLREKLKSKGI++LFPIQA TFD+VLDG DLVGRARTGQGKTLAFVLPI
Sbjct: 105 PNALANFRISEPLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPI 164
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LESL NG KAS YGR PSVLVLLPTRELAKQVH DF+ YG GL+SCC+YGG+ Y
Sbjct: 165 LESLVNGKHKASG-ADYGRPPSVLVLLPTRELAKQVHTDFEFYGATFGLSSCCVYGGSEY 223
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
QE K++KG+D+V+GTPGR+KD +++G ++ SLKFRVLDEADEML MGFV+DVELILG
Sbjct: 224 RPQEMKIRKGVDIVVGTPGRVKDFVQKGTLNFKSLKFRVLDEADEMLNMGFVDDVELILG 283
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
KVED KVQTLLFSATLP WV +S +FLK KKT+DLVG+EK+KAS +VRH+ LPC+ +
Sbjct: 284 KVEDVTKVQTLLFSATLPDWVGKLSLRFLKPGKKTVDLVGDEKLKASASVRHLALPCNRA 343
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRS 407
AR+QVIPDIIRCYS GGRTIIFTETKESAS+L+ L+ G+RALHGD+ Q+QREV LAGFRS
Sbjct: 344 ARAQVIPDIIRCYSRGGRTIIFTETKESASELSGLIAGSRALHGDVAQAQREVILAGFRS 403
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR- 466
GKF+ LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML+DPR
Sbjct: 404 GKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFDPRH 463
Query: 467 KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNS 526
K +V++IERESGVKFEHISAPQP D+A++AG EAAE I VSDSVIP F+ AE+LL++S
Sbjct: 464 KFNVNRIERESGVKFEHISAPQPTDVAQSAGSEAAEAIASVSDSVIPVFREQAEQLLSSS 523
Query: 527 GLS 529
G+S
Sbjct: 524 GMS 526
>gi|125564407|gb|EAZ09787.1| hypothetical protein OsI_32075 [Oryza sativa Indica Group]
Length = 685
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/446 (72%), Positives = 376/446 (84%), Gaps = 21/446 (4%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
PNA++ FRIS PLREKLKSKGI++LFPIQA TFD+VLDG DLVGRARTGQGKTLAFVLPI
Sbjct: 103 PNALANFRISEPLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPI 162
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LESL NG KAS++T YGR P+VLVLLPTRELAKQVH DF YG GL++CC+YGG+ Y
Sbjct: 163 LESLVNGTHKASRRTDYGRPPTVLVLLPTRELAKQVHTDFAFYGATFGLSACCVYGGSDY 222
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL- 286
+QE ++KG+D+V+GTPGR+KD +E+G ++ SLKFRVLDEADEML M
Sbjct: 223 RSQEMAIRKGVDIVVGTPGRVKDFVEKGTLNFRSLKFRVLDEADEMLNM----------G 272
Query: 287 ---------GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337
GKVED KVQTLLFSAT+P WVK +S +FLKS KKT+DLVG+EK+KAS +V
Sbjct: 273 FVDDVELILGKVEDVTKVQTLLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLKASASV 332
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQ 397
RH+ LPC+ +AR+QVIPDIIRCYS GGRTIIFTETKESAS L+ L+ G+RALHGD+ Q+Q
Sbjct: 333 RHLALPCNRAARAQVIPDIIRCYSRGGRTIIFTETKESASDLSGLIAGSRALHGDVAQAQ 392
Query: 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG 457
REV LAGFRSGKF+ LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG
Sbjct: 393 REVILAGFRSGKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG 452
Query: 458 VAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFK 516
VAVML++PR K +V++IERESGVKFEHISAPQP D+A++AG EAAE I+ VSDSVIP F+
Sbjct: 453 VAVMLFEPRYKFNVNRIERESGVKFEHISAPQPTDVAQSAGTEAAEAISSVSDSVIPVFR 512
Query: 517 SAAEELLNNSGLSAAELLAKALAKAV 542
AE+LLN+SG+SA +LLAKALAKAV
Sbjct: 513 EQAEQLLNSSGMSAVDLLAKALAKAV 538
>gi|242045340|ref|XP_002460541.1| hypothetical protein SORBIDRAFT_02g030210 [Sorghum bicolor]
gi|241923918|gb|EER97062.1| hypothetical protein SORBIDRAFT_02g030210 [Sorghum bicolor]
Length = 711
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/415 (74%), Positives = 366/415 (88%), Gaps = 1/415 (0%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
PNA++ FRIS PLR+ L+SKGI++LFPIQA TFD+VLDG+DLVGRARTGQGKTLAFVLPI
Sbjct: 121 PNALTNFRISEPLRQSLRSKGIKALFPIQATTFDLVLDGNDLVGRARTGQGKTLAFVLPI 180
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LESL NG KAS++T +GR PSV+VLLPTRELA QVH DF+ YG GL++CC+YGG+PY
Sbjct: 181 LESLVNGAHKASRRTEHGRTPSVIVLLPTRELANQVHADFEFYGATFGLSACCVYGGSPY 240
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
QE L++G+D+V+GTPGR+KD I +G ++L +LKFRVLDEADEML MGFV+DVELILG
Sbjct: 241 RPQEMALRRGVDIVVGTPGRVKDFIVKGTLNLKNLKFRVLDEADEMLNMGFVDDVELILG 300
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
KVEDA KVQTLLFSATLP WV +S +FLK D+KT+DLVGNEK+KAS +V+H+ LPC+ +
Sbjct: 301 KVEDATKVQTLLFSATLPDWVNKLSMRFLKVDRKTVDLVGNEKLKASASVKHLALPCNKA 360
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRS 407
AR+QVIPDIIRCYS GGRTIIFTETK+SAS+L+ L+PG+RALHGD+ Q+QREV LAGFR
Sbjct: 361 ARAQVIPDIIRCYSHGGRTIIFTETKDSASELSGLIPGSRALHGDVVQAQREVILAGFRG 420
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR- 466
GKF LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY+PR
Sbjct: 421 GKFQVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYEPRY 480
Query: 467 KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEE 521
K SV+++ERESGVKFEHISAPQP D+A++AG EAA+ I+ VSDSVIP F+ AE+
Sbjct: 481 KYSVNRLERESGVKFEHISAPQPTDVAQSAGSEAADAISSVSDSVIPVFRQQAEQ 535
>gi|414886328|tpg|DAA62342.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 707
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/415 (75%), Positives = 363/415 (87%), Gaps = 1/415 (0%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
PNA++ FRIS LR+ L+SKGI+SLFPIQA TFD+VLDGSDLVGRARTGQGKTLAFVLPI
Sbjct: 120 PNALTNFRISESLRQSLRSKGIKSLFPIQATTFDLVLDGSDLVGRARTGQGKTLAFVLPI 179
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LESL NG KAS++T +GR PSVLVLLPTRELA QVH DF+ YG GL++CC+YGG+PY
Sbjct: 180 LESLVNGANKASRRTEHGRTPSVLVLLPTRELANQVHADFEFYGATFGLSACCVYGGSPY 239
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
QE L++G+D+V+GTPGR+KD I +G ++L LKFRVLDEADEML MGFV+DVELILG
Sbjct: 240 RPQEMALRRGVDIVVGTPGRVKDFIVKGTLNLKCLKFRVLDEADEMLNMGFVDDVELILG 299
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
KVEDA KVQTLLFSATLP WV +S +FLK D+KT+DLVGNEK+KAS +V+H+ LPC+ +
Sbjct: 300 KVEDATKVQTLLFSATLPEWVNKLSMRFLKVDRKTVDLVGNEKLKASASVKHLALPCNKA 359
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRS 407
AR+QVIPDIIRCYS GGRTIIFTETK+SAS+L+ L+ G+RALHGD+ Q+QREV LAGFRS
Sbjct: 360 ARAQVIPDIIRCYSHGGRTIIFTETKDSASELSGLIHGSRALHGDVAQAQREVILAGFRS 419
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR- 466
GKF LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY+PR
Sbjct: 420 GKFQVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYEPRY 479
Query: 467 KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEE 521
K SVS++ERESGVKFEHISAPQP D+A++AG EAA+ I VSDSVIP F+ AE+
Sbjct: 480 KHSVSRLERESGVKFEHISAPQPTDVAQSAGSEAADAIASVSDSVIPIFRQQAEQ 534
>gi|125606362|gb|EAZ45398.1| hypothetical protein OsJ_30047 [Oryza sativa Japonica Group]
Length = 685
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/446 (71%), Positives = 375/446 (84%), Gaps = 21/446 (4%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
PNA++ FRIS LREKLKSKGI++LFPIQA TFD+VLDG DLVGRARTGQGKTLAFVLPI
Sbjct: 103 PNALANFRISESLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPI 162
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LESL NG KAS++T YGR P+VLVLLPTRELAKQVH DF YG GL++CC+YGG+ Y
Sbjct: 163 LESLVNGTHKASRRTDYGRPPTVLVLLPTRELAKQVHTDFAFYGATFGLSACCVYGGSDY 222
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL- 286
+QE ++KG+D+V+GTPGR+KD +E+G ++ SLKFRVLDEADEML M
Sbjct: 223 RSQEMAIRKGVDIVVGTPGRVKDFVEKGTLNFRSLKFRVLDEADEMLNM----------G 272
Query: 287 ---------GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337
GKVED KVQTLLFSAT+P WVK +S +FLKS KKT+DLVG+EK+KAS +V
Sbjct: 273 FVDDVELILGKVEDVTKVQTLLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLKASASV 332
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQ 397
RH+ LPC+ +AR+QVIPDIIRCYS GGRTIIFTETKESAS L+ L+ G+RALHGD+ Q+Q
Sbjct: 333 RHLALPCNRAARAQVIPDIIRCYSRGGRTIIFTETKESASDLSGLIAGSRALHGDVAQAQ 392
Query: 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG 457
REV LAGFRSGKF+ LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG
Sbjct: 393 REVILAGFRSGKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG 452
Query: 458 VAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFK 516
VAVML++PR K +V++IERESGVKFEHISAPQP D+A++AG EAAE I+ VSDSVIP F+
Sbjct: 453 VAVMLFEPRYKFNVNRIERESGVKFEHISAPQPTDVAQSAGTEAAEAISSVSDSVIPVFR 512
Query: 517 SAAEELLNNSGLSAAELLAKALAKAV 542
AE+LLN+SG+SA +LLAKALAKAV
Sbjct: 513 EQAEQLLNSSGMSAVDLLAKALAKAV 538
>gi|168023701|ref|XP_001764376.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684528|gb|EDQ70930.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 689
Score = 606 bits (1563), Expect = e-170, Method: Compositional matrix adjust.
Identities = 302/483 (62%), Positives = 376/483 (77%), Gaps = 20/483 (4%)
Query: 72 GEPVNLKSEKEKKKK----------KKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLR 121
GEP +K K+K+ K K KV G +E G + P AVS F I LR
Sbjct: 66 GEPEVVKVSKKKRAKSPEDDGAAAKKIQKVVENGG---KEVGAAVDPMAVSNFNIGKALR 122
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT-NGPTKASK 180
+KLK+KGIESLFPIQA TF+ V DG+D+VGRARTGQGKTLAFVLP+LESL+ +G TK +
Sbjct: 123 DKLKAKGIESLFPIQAQTFEAVFDGNDMVGRARTGQGKTLAFVLPVLESLSQSGYTKNLQ 182
Query: 181 KTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDV 240
+ GRA +V+VL PTRELAKQVH DF+ YG AVGL++ C+YGGAPY QE L++G+D+
Sbjct: 183 R---GRAAAVIVLAPTRELAKQVHADFETYGSAVGLSTVCVYGGAPYGPQENALRRGVDI 239
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGRIKDH ERG ++L SLKFR+LDEADEML MGFV+DVE ILG V+D +KVQTLLF
Sbjct: 240 VVGTPGRIKDHFERGTLNLKSLKFRILDEADEMLNMGFVDDVETILGGVDDPSKVQTLLF 299
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SATLP+WV+ I+ KFLK+ +KT+DLVG+EKMKAS +VRH++LP S R+Q++ D+I CY
Sbjct: 300 SATLPTWVQQIARKFLKATRKTVDLVGDEKMKASNSVRHLLLPGHYSMRTQLVQDVISCY 359
Query: 361 SSGGRTIIFTETKESASQLADLLPG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
SGGR I+FTETK AS+LA L ARALHGDI Q+QREVTL GFR+GKF LVAT+V
Sbjct: 360 GSGGRIIVFTETKNDASELAGALKSGTARALHGDIPQNQREVTLQGFRTGKFSVLVATDV 419
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS-VSKIERES 477
AARGLDINDVQL+IQCEPPRD E YIHRSGRTGRAGNTGV+V+ +D +K V +IER++
Sbjct: 420 AARGLDINDVQLVIQCEPPRDAETYIHRSGRTGRAGNTGVSVLFFDRKKEYMVPQIERKA 479
Query: 478 GVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKA 537
G KFE I+APQP DIAKA+G A +++ VSD+V+P F+ AA++L+ +SGL ++LAKA
Sbjct: 480 GFKFERIAAPQPLDIAKASGNTATDSVLAVSDTVVPLFRQAAKDLVESSGLPILDILAKA 539
Query: 538 LAK 540
+AK
Sbjct: 540 IAK 542
>gi|302791703|ref|XP_002977618.1| hypothetical protein SELMODRAFT_107027 [Selaginella moellendorffii]
gi|300154988|gb|EFJ21622.1| hypothetical protein SELMODRAFT_107027 [Selaginella moellendorffii]
Length = 663
Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust.
Identities = 293/466 (62%), Positives = 370/466 (79%), Gaps = 10/466 (2%)
Query: 79 SEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAM 138
+E+ +KK+KK++V P + E+ + E+P A+ FRIS ++ L+ KGI++LF IQA
Sbjct: 53 AEEPEKKRKKSEV-PSS--PEKSDIDVENPYALENFRISDAVKGMLREKGIKALFQIQAQ 109
Query: 139 TFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE 198
+FD+VLDG DLVGRARTGQGKTLAFVLPI+ESL +S K GYGRAP+VLVL PTRE
Sbjct: 110 SFDIVLDGDDLVGRARTGQGKTLAFVLPIIESLRK---SSSGKKGYGRAPTVLVLAPTRE 166
Query: 199 LAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNID 258
LAKQVH DF+ YGGA GL++ C+YGG+ Y Q+ +++G+D+V+GTPGRIKD ++RG+++
Sbjct: 167 LAKQVHADFECYGGAAGLSTICVYGGSQYGPQQNAMRRGVDIVVGTPGRIKDFLDRGDLN 226
Query: 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKS 318
L +LKFRVLDEADEML MGFVE VE ILG VED + VQTLLFSAT+PSWVK I+T+FLK
Sbjct: 227 LKTLKFRVLDEADEMLNMGFVEAVEAILGAVEDTSSVQTLLFSATMPSWVKEIATRFLKP 286
Query: 319 DKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQ 378
+KKT+DLVG+EKMKAS NV+H++L C+ SARSQ+I D+I+ Y SGGR I+FTETK AS+
Sbjct: 287 NKKTVDLVGDEKMKASNNVKHLLLQCAYSARSQMIADVIKVYGSGGRVIVFTETKNDASE 346
Query: 379 LADLLPG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLII-QCE 435
LA L AR LHGDI Q+QRE TLAGFRS KF+ LVAT+VAARGLDINDVQLII QCE
Sbjct: 347 LAGSLGTNVARPLHGDIPQAQREHTLAGFRSAKFLVLVATDVAARGLDINDVQLIIQQCE 406
Query: 436 PPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS-VSKIERESGVKFEHISAPQPADIAK 494
PP+DVE YIHRSGRTGRAGNTG+AVM++D +K + IE ++G KFE I+ PQP+ IAK
Sbjct: 407 PPKDVETYIHRSGRTGRAGNTGIAVMMFDRKKEYMIPMIEAKAGFKFEKITPPQPSTIAK 466
Query: 495 AAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAK 540
+ A + ++ VSDSV+P FK AAE+L+++ A ELLAKALAK
Sbjct: 467 ESSFTAIKAVSAVSDSVVPFFKEAAEQLVSDCKRPAVELLAKALAK 512
>gi|212721126|ref|NP_001132058.1| uncharacterized protein LOC100193470 [Zea mays]
gi|194693318|gb|ACF80743.1| unknown [Zea mays]
Length = 506
Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust.
Identities = 269/354 (75%), Positives = 312/354 (88%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
PNA++ FRIS LR+ L+SKGI+SLFPIQA TFD+VLDGSDLVGRARTGQGKTLAFVLPI
Sbjct: 120 PNALTNFRISESLRQSLRSKGIKSLFPIQATTFDLVLDGSDLVGRARTGQGKTLAFVLPI 179
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LESL NG KAS++T +GR PSVLVLLPTRELA QVH DF+ YG GL++CC+YGG+PY
Sbjct: 180 LESLVNGANKASRRTEHGRTPSVLVLLPTRELANQVHADFEFYGATFGLSACCVYGGSPY 239
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
QE L++G+D+V+GTPGR+KD I +G ++L LKFRVLDEADEML MGFV+DVELILG
Sbjct: 240 RPQEMALRRGVDIVVGTPGRVKDFIVKGTLNLKCLKFRVLDEADEMLNMGFVDDVELILG 299
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
KVEDA KVQTLLFSATLP WV +S +FLK D+KT+DLVGNEK+KAS +V+H+ LPC+ +
Sbjct: 300 KVEDATKVQTLLFSATLPEWVNKLSMRFLKVDRKTVDLVGNEKLKASASVKHLALPCNKA 359
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRS 407
AR+QVIPDIIRCYS GGRTIIFTETK+SAS+L+ L+ G+RALHGD+ Q+QREV LAGFRS
Sbjct: 360 ARAQVIPDIIRCYSHGGRTIIFTETKDSASELSGLIHGSRALHGDVAQAQREVILAGFRS 419
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
GKF LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV+
Sbjct: 420 GKFQVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVI 473
>gi|302786878|ref|XP_002975210.1| hypothetical protein SELMODRAFT_150370 [Selaginella moellendorffii]
gi|300157369|gb|EFJ23995.1| hypothetical protein SELMODRAFT_150370 [Selaginella moellendorffii]
Length = 626
Score = 582 bits (1501), Expect = e-163, Method: Compositional matrix adjust.
Identities = 285/439 (64%), Positives = 353/439 (80%), Gaps = 7/439 (1%)
Query: 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVL 165
E+P A+ FRIS ++ L+ KGI++LF IQA +FD+VLDG DLVGRARTGQGKTLAFVL
Sbjct: 40 ENPYALENFRISDAVKGMLREKGIKALFQIQAQSFDIVLDGDDLVGRARTGQGKTLAFVL 99
Query: 166 PILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA 225
PI+ESL +S K GYGRAP+VLVL PTRELAKQVH DF+ YGGA GL++ C+YGG+
Sbjct: 100 PIIESLRK---SSSGKKGYGRAPTVLVLAPTRELAKQVHADFECYGGAAGLSTICVYGGS 156
Query: 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285
Y Q+ +++G+D+V+GTPGRIKD ++RG+++L +LKFRVLDEADEML MGFVE VE I
Sbjct: 157 QYGPQQNAMRRGVDIVVGTPGRIKDFLDRGDLNLKTLKFRVLDEADEMLNMGFVEAVEAI 216
Query: 286 LGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
LG VED + VQTLLFSAT+PSWVK I+T+FLK +KKT+DLVG+EKMKAS NV+H++L C+
Sbjct: 217 LGAVEDTSSVQTLLFSATMPSWVKEIATRFLKPNKKTVDLVGDEKMKASNNVKHLLLQCA 276
Query: 346 SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG--ARALHGDIQQSQREVTLA 403
SARSQ+I D+I+ Y SGGR I+FTETK AS+LA L AR LHGDI Q+QRE TLA
Sbjct: 277 YSARSQMIADVIKVYGSGGRVIVFTETKNDASELAGSLGTNVARPLHGDIPQAQREHTLA 336
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQ-CEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
GFRS KF+ LVAT+VAARGLDINDVQLIIQ CEPP+DVE YIHRSGRTGRAGNTG+AVM+
Sbjct: 337 GFRSAKFLVLVATDVAARGLDINDVQLIIQQCEPPKDVETYIHRSGRTGRAGNTGIAVMM 396
Query: 463 YDPRKSS-VSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEE 521
+D +K + IE ++G KFE I+ PQP+ IAK + A + ++ VSDSV+P FK AAE+
Sbjct: 397 FDRKKEYMIPMIEAKAGFKFEKITPPQPSTIAKESSFTAIKAVSAVSDSVVPFFKEAAEQ 456
Query: 522 LLNNSGLSAAELLAKALAK 540
L+++ A ELLAKALAK
Sbjct: 457 LVSDCKRPAMELLAKALAK 475
>gi|168015062|ref|XP_001760070.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688820|gb|EDQ75195.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 657
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 254/387 (65%), Positives = 319/387 (82%), Gaps = 5/387 (1%)
Query: 157 QGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGL 216
QGKTLAFVLP+LESL+ + +K G GRAP+V+VL PTRELAKQVH DF+ YG AVGL
Sbjct: 129 QGKTLAFVLPVLESLSQ--SGYTKSLGRGRAPAVIVLAPTRELAKQVHADFETYGNAVGL 186
Query: 217 TSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM 276
++ C+YGGAPY QE L++G+D+V+GTPGRIKDH+ERG ++L SLKFR+LDEADEML M
Sbjct: 187 STVCVYGGAPYGPQENALRRGVDIVVGTPGRIKDHLERGGLNLKSLKFRILDEADEMLNM 246
Query: 277 GFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN 336
GFV+DVE ILG V+D +KVQTLLFSATLP+WV+ I+ KFLK +++T+DLVG+EKMKAS N
Sbjct: 247 GFVDDVEKILGGVDDPSKVQTLLFSATLPTWVQQIARKFLKPERRTVDLVGDEKMKASNN 306
Query: 337 VRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG--ARALHGDIQ 394
V+H++LP S R+Q++ D+I+CY SGGR I+FTETK AS+LA +L ARALHGDI
Sbjct: 307 VKHLLLPGHYSMRTQLVQDVIQCYGSGGRIIVFTETKNDASELAGVLKSGTARALHGDIP 366
Query: 395 QSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
Q+QREVTL GFR+ KF LVAT+VAARGLDINDVQL+IQCEPPRD E YIHRSGRTGRAG
Sbjct: 367 QNQREVTLQGFRTSKFSVLVATDVAARGLDINDVQLVIQCEPPRDAETYIHRSGRTGRAG 426
Query: 455 NTGVAVMLYDPRKSS-VSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIP 513
NTG++V+ YD +K + +IER++G KFE I+APQPADIAKA+G A + + VSD+VIP
Sbjct: 427 NTGISVLFYDRKKEYMIPQIERKAGFKFERIAAPQPADIAKASGNTATDGVLAVSDTVIP 486
Query: 514 AFKSAAEELLNNSGLSAAELLAKALAK 540
F+ AAE+L+ +SGL ++LAKA+AK
Sbjct: 487 LFRQAAEDLVKSSGLPVLDVLAKAIAK 513
>gi|307109393|gb|EFN57631.1| hypothetical protein CHLNCDRAFT_20835, partial [Chlorella
variabilis]
Length = 608
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 263/437 (60%), Positives = 327/437 (74%), Gaps = 6/437 (1%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P A+ F++S P++ L++KGIE+LF IQA +L+G DLVGRARTG GKTLAFVLPI
Sbjct: 2 PLALDNFKLSEPVKSLLRAKGIEALFDIQAQCLPPLLEGQDLVGRARTGCGKTLAFVLPI 61
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
+E L G A K +GRAPSV+VL PTRELAKQV DF+ Y A LT+ CLYGG Y
Sbjct: 62 VERLAGG-QGAGGKRAFGRAPSVVVLAPTRELAKQVAADFEYYAKAFSLTTVCLYGGTQY 120
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
QE L++G+DVVIGTPGR+KDH+ERG + L+ L+FRVLDE DEML MGFVEDVE IL
Sbjct: 121 GPQEGMLRRGVDVVIGTPGRVKDHLERGTLKLNQLRFRVLDECDEMLNMGFVEDVEKILN 180
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
DA VQTLLFSATLP WVK I+ +FLK T+DLVG++KMKAST+VRH++LPC S
Sbjct: 181 AGVDAATVQTLLFSATLPHWVKDITKRFLKPGFTTVDLVGSQKMKASTSVRHLLLPCHWS 240
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAG 404
RSQ++PD+++CY GRTIIFTETK A++L+ L GARALHGDI Q QREVTLAG
Sbjct: 241 QRSQIVPDLVKCYGVCGRTIIFTETKNDANELSGTLAESFGARALHGDIPQGQREVTLAG 300
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
FRSGKF LVAT+VAARGLDI+ V+L+IQ EPP+D E YIHRSGRTGRAG TG+ + L D
Sbjct: 301 FRSGKFSVLVATDVAARGLDISGVELVIQLEPPKDPETYIHRSGRTGRAGQTGICLTLVD 360
Query: 465 PRKSS-VSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELL 523
RK + I+ ++G+KFE + APQP+D+A+ AG A E + V SV+P F++AA++LL
Sbjct: 361 RRKEGLIPYIQTKAGLKFERVGAPQPSDMAQLAGERALEAVQAVDVSVLPFFRAAAQKLL 420
Query: 524 NNSGLSAAELLAKALAK 540
+ G S + +A ALAK
Sbjct: 421 ESVG-SPEDAVALALAK 436
>gi|384247126|gb|EIE20614.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 698
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 259/443 (58%), Positives = 322/443 (72%), Gaps = 9/443 (2%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P AV FR+S ++ L+ KGIE+LF IQA T + +LDG DLVGRARTGQGKTLAFVLPI
Sbjct: 103 PLAVDNFRLSDKVKALLREKGIEALFSIQAHTLNHLLDGFDLVGRARTGQGKTLAFVLPI 162
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
+E L A+++ GR P V+VL PTRELAKQVH DF+ G A L++ CLYGGAP
Sbjct: 163 VERLLAHNISATRRQ-QGRTPRVIVLAPTRELAKQVHADFENIGRAANLSTVCLYGGAPM 221
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
QE L++G DVV+GTPGR+KDH+ERGN+ L L FRVLDE DEML MGFVEDVE IL
Sbjct: 222 SPQEQILRRGCDVVVGTPGRVKDHLERGNLKLQDLMFRVLDECDEMLNMGFVEDVEKILN 281
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
D KVQTLLFSATLPSWVK I+ +FL+ + K +DLVG +KMKAST+V+H+VLPC S
Sbjct: 282 AGGDI-KVQTLLFSATLPSWVKDITRRFLQPNHKLVDLVGTDKMKASTSVKHMVLPCHWS 340
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQL-ADLLPGARA--LHGDIQQSQREVTLAG 404
R+ V D++RCY + GRTIIF +TK+ ++L A L G RA LHGDI Q QREVTL
Sbjct: 341 QRATVAADLVRCYGALGRTIIFCDTKKDCNELVASLGEGMRAQPLHGDIPQQQREVTLKA 400
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
FR+ KF LVAT+VAARGLDIN V+L+IQ EPP+D E YIHRSGRTGRA +TGV+V L D
Sbjct: 401 FRAAKFDILVATDVAARGLDINGVELVIQIEPPKDPETYIHRSGRTGRASSTGVSVTLVD 460
Query: 465 PRKSS-VSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELL 523
+K + I + +GV FE I APQP+++A+ AG A+E++ +V +V+P F++AA +LL
Sbjct: 461 RKKEGLIPFIAKRAGVTFERIGAPQPSEMARIAGERASESLVEVDKTVVPWFRAAAAQLL 520
Query: 524 NNSGLSAAELLAKALAKAVVSAF 546
G E LA ALAK V+ F
Sbjct: 521 ETVG-DPEEALAMALAK--VTGF 540
>gi|308802996|ref|XP_003078811.1| putative RNA helicase (ISS) [Ostreococcus tauri]
gi|116057264|emb|CAL51691.1| putative RNA helicase (ISS) [Ostreococcus tauri]
Length = 693
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 263/524 (50%), Positives = 333/524 (63%), Gaps = 45/524 (8%)
Query: 32 AALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKKKKKAKV 91
AA TE +K S +++ SK+ K EE+ER+E ELG P
Sbjct: 30 AAATETKKKRKASDEEDESKREKSRARREEDERAEGDLELGTP----------------- 72
Query: 92 EPEAGVEEQERGESEHPNAVSRFR-ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLV 150
EP E +P A+ F+ ++ P++ L+ KG ++LF IQA T ++ L G D+V
Sbjct: 73 EP----------EEPNPLALDNFKGLTDPVKTTLRKKGYDALFQIQAETLEIALGGRDVV 122
Query: 151 GRARTGQGKTLAFVLPILESLTN-GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209
GRARTG GKTLAFVLPI+E + P A+ + GR P +VL PTRELAKQV DFD
Sbjct: 123 GRARTGCGKTLAFVLPIIELMAKMSPMPANGRRVQGRRPMCVVLAPTRELAKQVFADFDW 182
Query: 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269
G + G S C+YGGAPY QE L+ G+D+VIGTPGR+KDH+ER + ++ LKFRVLDE
Sbjct: 183 IGNSYGFKSLCVYGGAPYREQEMGLRSGVDIVIGTPGRMKDHLERKTLMMTDLKFRVLDE 242
Query: 270 ADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNE 329
ADEML MGFV+DVE IL + + VQTLLFSATLPSWVK IS +FLK + T+DLVG+E
Sbjct: 243 ADEMLNMGFVDDVETIL---KSSGDVQTLLFSATLPSWVKDISKRFLKPNYSTVDLVGDE 299
Query: 330 KMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLP---- 384
K KAS V+H++LPC S R ++ D+IR + GGR I+F +TK +L D L
Sbjct: 300 KQKASGAVQHMLLPCQWSDRVDLVCDVIRSKAPGGGRVIVFCDTKRDCGELCDNLQKEIP 359
Query: 385 -GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAY 443
GA+ALHGD+ QSQREV L+ FR KF LVAT+VAARGLDI V+L+IQCEPP+D E Y
Sbjct: 360 KGAKALHGDVSQSQREVVLSLFREDKFQVLVATDVAARGLDITGVELVIQCEPPKDAETY 419
Query: 444 IHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAE 502
IHRSGRTGRAG TG++V L PR +V IER+ G KF I PQPA++AKAAG A E
Sbjct: 420 IHRSGRTGRAGATGISVTLCTPRNEWAVPNIERKGGFKFIRIGPPQPAEMAKAAGKIAGE 479
Query: 503 TITQVSDSVIPAFKSAAEELL------NNSGLSAAELLAKALAK 540
I +V F A +LL + G E+LA A+AK
Sbjct: 480 QIRKVHKGAAKLFMDVARDLLEGEDSDSEEGRDPVEVLAMAIAK 523
>gi|412985798|emb|CCO16998.1| predicted protein [Bathycoccus prasinos]
Length = 689
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 251/476 (52%), Positives = 315/476 (66%), Gaps = 23/476 (4%)
Query: 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
+ +P A+ F +S + L+ KGI++LF IQA T D L G D+VGRARTG GKTLAFV
Sbjct: 78 TPNPLALENFSLSPEVVSALQKKGIDALFAIQAQTLDTALSGKDIVGRARTGCGKTLAFV 137
Query: 165 LPILESLT-NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223
LPI+E + + PT AS + GR P V VL PTRELAKQV DFD G A L + C+YG
Sbjct: 138 LPIVEQINKSDPTPASGRRLQGRRPVVCVLCPTRELAKQVGADFDWVGQAFNLKTVCVYG 197
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283
GAPY QE L+ G D+++GTPGR+KDH++R N+ +LKFRVLDEADEML MGFV+DVE
Sbjct: 198 GAPYRDQEQGLRSGCDIIVGTPGRVKDHLDRKNLKFDNLKFRVLDEADEMLNMGFVDDVE 257
Query: 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343
IL KV + +QTLLFSATLP WVK I+ +FLK D TIDLVGNEK KAS V+H++LP
Sbjct: 258 TIL-KV--SGDIQTLLFSATLPPWVKDIAKRFLKKDYATIDLVGNEKQKASGQVQHLLLP 314
Query: 344 CSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQ 397
C R +IPD+IR + +GGR I+F +TK ++L D L GA+ALHGDI Q+
Sbjct: 315 CQWQERVSLIPDLIRAKAPTGGRCILFCDTKRDCTELCDALQSSLEKGAKALHGDIAQNN 374
Query: 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG 457
REV L GFR KF LVAT+VAARGLDI+ V+L+IQCEPP+D E YIHRSGRTGRAG TG
Sbjct: 375 REVVLQGFRDNKFQVLVATDVAARGLDISGVELVIQCEPPKDPETYIHRSGRTGRAGATG 434
Query: 458 VAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFK 516
+ V L PR ++ IER+ G +F I PQPA++AKAA E + V F
Sbjct: 435 ICVTLLTPRNEWAIPNIERKGGFRFVRIGPPQPAEMAKAAAKIVCEKVRAVHKGAAKLFM 494
Query: 517 SAAEELL-----NNSGLSAAELLAKALAKAV-------VSAFLFSSSSNSLSLTSG 560
AA +LL ++ G A E+LA ALA A S ++ S +L L++G
Sbjct: 495 QAARDLLEEGDDHDEGRDAVEVLAMALAHACGHGELRQRSLLTSTAGSTTLILSAG 550
>gi|145345534|ref|XP_001417262.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577489|gb|ABO95555.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 654
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 246/453 (54%), Positives = 304/453 (67%), Gaps = 19/453 (4%)
Query: 104 ESEHPN--AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTL 161
E E PN A+ F +S P++ L+ KG ++LF IQA T ++ L G D+VGRARTG GKTL
Sbjct: 76 EPEEPNPLALDNFALSEPVKATLRKKGFDALFAIQAETLEIALSGKDVVGRARTGCGKTL 135
Query: 162 AFVLPILESLTN-GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC 220
AFVLPI+E + P A+ + GR P +VL PTRELAKQV DFD G + G S C
Sbjct: 136 AFVLPIVEEMAKISPMPANGRRVQGRRPMCVVLAPTRELAKQVFADFDWIGNSFGFKSVC 195
Query: 221 LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVE 280
+YGG PY QE L+ G DVVIGTPGR+KDH+ER + + LKFRVLDEADEML MGFV+
Sbjct: 196 VYGGTPYREQEMGLRGGCDVVIGTPGRMKDHLERKTLMMDKLKFRVLDEADEMLNMGFVD 255
Query: 281 DVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340
DVELIL + + VQTLLFSATLP WVK I+ +FLK D T+DLVG++K KAS V+H+
Sbjct: 256 DVELIL---KSSGDVQTLLFSATLPPWVKDIAKRFLKPDYATVDLVGDQKQKASGAVQHM 312
Query: 341 VLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLP-----GARALHGDIQ 394
+LPC S R ++ D+IR + GGR I+F +TK +L D L GA+ALHGD+
Sbjct: 313 LLPCQWSDRVDLVCDVIRSKAPGGGRVIVFCDTKRDCGELCDNLQKEIPKGAKALHGDVS 372
Query: 395 QSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
Q QREV LAGFR KF LVAT+VAARGLDI V+L+IQCEPP+D E YIHRSGRTGRAG
Sbjct: 373 QGQREVVLAGFREDKFQVLVATDVAARGLDITGVELVIQCEPPKDAETYIHRSGRTGRAG 432
Query: 455 NTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIP 513
TG++V L PR + +V IER+ G KF I PQPA++AKAAG A E I +V
Sbjct: 433 ATGISVTLCTPRSEWAVPNIERKGGFKFVRIGPPQPAEMAKAAGKIAGEQIRKVHKGAAK 492
Query: 514 AFKSAAEELL------NNSGLSAAELLAKALAK 540
F A +LL + G E+LA A+AK
Sbjct: 493 LFMDVARDLLEGEDSDSEEGRDPVEVLAMAIAK 525
>gi|302848249|ref|XP_002955657.1| hypothetical protein VOLCADRAFT_66087 [Volvox carteri f.
nagariensis]
gi|300259066|gb|EFJ43297.1| hypothetical protein VOLCADRAFT_66087 [Volvox carteri f.
nagariensis]
Length = 727
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 248/543 (45%), Positives = 341/543 (62%), Gaps = 44/543 (8%)
Query: 35 TEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKKKKKAKVEP- 93
T+ ++ KK KK + +K E E +E + EP+ K+ KK++ VEP
Sbjct: 7 TDDAAKVKKPKKDAADNDKKTKRKREAEPEAEPLTV--EPLATAGTKKSKKQQDEGVEPP 64
Query: 94 ------EAGVEEQERGESEHPNA----------------VSRFRISVPLREKLKSKGIES 131
A + E + P A + RF +S ++ L+S+ IES
Sbjct: 65 LKKAKRSAKASASDDTEPQPPAAAHQAPITAATPASELGLDRFPLSEQVKSMLRSQNIES 124
Query: 132 LFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY------G 185
LFPIQAMT + L G D+VGRARTG GKTLAFVLPI+E + A ++ G G
Sbjct: 125 LFPIQAMTLEPGLAGVDVVGRARTGCGKTLAFVLPIVERIL-----AEQRKGVAAGRVAG 179
Query: 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTP 245
R P +VL PTRELAKQV E F G A L + C+YGG PY QE L KG+DVV+GTP
Sbjct: 180 RLPICIVLAPTRELAKQVQEVFANVGKAANLYTLCVYGGTPYDGQETALSKGVDVVVGTP 239
Query: 246 GRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE-DANKVQTLLFSATL 304
GRIKD +ERG + LS+++FRVLDE D+ML MGF+EDVE IL E + +QTLLFSATL
Sbjct: 240 GRIKDLLERGTLKLSNIRFRVLDEVDQMLAMGFIEDVETILKAGEQQPDSIQTLLFSATL 299
Query: 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
P WVK ++ +FL+ + +DLVG++KM+A+ VRH++LPCS R+ ++ D+I Y +GG
Sbjct: 300 PKWVKGLTQRFLRPGHRFMDLVGDDKMQAAVTVRHLMLPCSYPQRAGLLKDLITSYGAGG 359
Query: 365 RTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421
RTIIFT++K+ A++L+ +L GA+ALHGD+ QS RE TL GFR G+F L+AT+VAAR
Sbjct: 360 RTIIFTDSKKEAAELSVVLGDSLGAQALHGDLAQSMREQTLDGFRKGRFPVLIATDVAAR 419
Query: 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVK 480
GLD++ ++L++ +PP D E YIHRSGRTGRAG++G + L + + V+ IE +G+K
Sbjct: 420 GLDVSGIELVLMVDPPADWETYIHRSGRTGRAGSSGTCITLVTKKMEYMVAIIEGRAGMK 479
Query: 481 FEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNS---GLSAAELLAKA 537
FE I APQPAD+A+ A + +++V +V+ F+ AA L G AE LA+A
Sbjct: 480 FERIGAPQPADMARIAAERSLALLSEVDPAVVEHFRDAANRHLEEQAADGRDPAEALARA 539
Query: 538 LAK 540
LAK
Sbjct: 540 LAK 542
>gi|159488923|ref|XP_001702450.1| RNA helicase [Chlamydomonas reinhardtii]
gi|158271118|gb|EDO96945.1| RNA helicase [Chlamydomonas reinhardtii]
Length = 737
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 223/440 (50%), Positives = 310/440 (70%), Gaps = 9/440 (2%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
+ RF++S ++ L+S+ IESLFPIQAMT + ++G D+VGRARTG GKTLAF +P++E
Sbjct: 105 GLDRFKLSEQVKSMLRSQNIESLFPIQAMTLEPAMEGLDVVGRARTGCGKTLAFTVPVVE 164
Query: 170 SLTNGPTKASK-KTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYH 228
+ S G GR P +VL PTRELAKQV E F G A L + C+YGG PY
Sbjct: 165 RIIAEQKSGSGIGRGAGRLPVCIVLAPTRELAKQVQEVFANTGKAANLYTMCVYGGTPYD 224
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
QE L +G+DVV+GTPGR+KD +ERG + LS+++FRVLDE D+ML MGF+EDVE IL +
Sbjct: 225 GQEQALSRGVDVVVGTPGRVKDLLERGTLKLSNIRFRVLDEVDQMLAMGFIEDVETILKQ 284
Query: 289 VEDA-NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
E+ +++QTLLFSATLP WV+ ++ +FL+ K +DLVG+++M+A+ V+H++LPCS
Sbjct: 285 GENNRDQIQTLLFSATLPKWVQGLTQRFLRPGHKFLDLVGDDRMQAAVTVKHLMLPCSYP 344
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAG 404
R+ ++ D+I Y +GGRTIIFT++K+ A++L+ +L GA+ALHGD+ QS RE TL G
Sbjct: 345 QRAGLLKDLITSYGAGGRTIIFTDSKKEAAELSVVLGDSLGAQALHGDLAQSMREQTLDG 404
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
FR G+F L+AT+VAARGLD+ ++L++ +PP D E YIHRSGRTGRAG++GV V L
Sbjct: 405 FRKGRFAILIATDVAARGLDVTGIELVLMVDPPADWETYIHRSGRTGRAGSSGVCVTLVT 464
Query: 465 PR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELL 523
+ + V IE+ +G+KFE I APQPAD+A+ A + +V +V+ F+ AAE L
Sbjct: 465 KKMEYMVPIIEKRAGMKFERIGAPQPADMARIAAERTLSLLGEVDPAVVGHFREAAERYL 524
Query: 524 NNS---GLSAAELLAKALAK 540
+ S G AE LA+ALAK
Sbjct: 525 SESAADGRDPAEALARALAK 544
>gi|255081336|ref|XP_002507890.1| predicted protein [Micromonas sp. RCC299]
gi|226523166|gb|ACO69148.1| predicted protein [Micromonas sp. RCC299]
Length = 631
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 229/423 (54%), Positives = 285/423 (67%), Gaps = 8/423 (1%)
Query: 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
N VS F +S + +L++KGI SL+ IQA F +LDG DLVGRARTG GKTLAFVLPI+
Sbjct: 26 NHVSNFNLSKEVCARLETKGITSLYSIQAQCFQPILDGKDLVGRARTGCGKTLAFVLPIV 85
Query: 169 ESLTN-GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
E + P AS + GR P V +L PTRELAKQVH DF G A GLTS C+YGGAPY
Sbjct: 86 EVINRENPMPASGRRVQGRRPVVALLAPTRELAKQVHSDFQHIGQAFGLTSICVYGGAPY 145
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
QE L++G D+VIGTPGR+KDH++R + L+FRVLDEADEML MGFVED+E IL
Sbjct: 146 GEQERALRQGCDIVIGTPGRVKDHLDRKTLSFEKLRFRVLDEADEMLNMGFVEDIETILN 205
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
+D +QT+LFSATLP WV IS +FL TIDLVG+EK KAS +V+H+++ C S
Sbjct: 206 HAKDNANLQTVLFSATLPKWVADISKRFLVPGYTTIDLVGDEKQKASGSVQHMLINCQWS 265
Query: 348 ARSQVIPDIIRCYSSG-GRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVT 401
R+ ++ D+IR G GR I+F +TK +L + L GA+ALHGD+ QSQREV
Sbjct: 266 ERTDLVCDLIRAKVPGDGRVIVFCDTKRDCGELQEALQKELEKGAKALHGDVNQSQREVV 325
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR KF TLVAT+VAARGLDI+ V+L++QCEPP++ E YIHRSGRTGR G TG+ V
Sbjct: 326 LDGFRKNKFQTLVATDVAARGLDISGVELVVQCEPPKEAETYIHRSGRTGRGGATGICVT 385
Query: 462 LYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
L PR ++ IER+ G KF I PQPA++ AA + + V F AA
Sbjct: 386 LCTPRNEWAIPNIERKGGFKFVRIGPPQPAEMVAAAAKIVIQQVRAVHKGAAKMFMDAAR 445
Query: 521 ELL 523
ELL
Sbjct: 446 ELL 448
>gi|291236621|ref|XP_002738237.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 21-like
[Saccoglossus kowalevskii]
Length = 700
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 215/439 (48%), Positives = 288/439 (65%), Gaps = 17/439 (3%)
Query: 98 EEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQ 157
E +E + E A S FR+S LK++ I LFPIQA TFD V DG D++ +ARTG
Sbjct: 107 EPKELTKEEKAGAFSNFRLSPQTIASLKARSITHLFPIQAKTFDYVYDGHDVIAQARTGT 166
Query: 158 GKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLT 217
GKTLAF LP++E L N KA GR P VLV+ PTRELAKQV EDF L+
Sbjct: 167 GKTLAFALPLVEKLKNTEFKA------GRPPQVLVMAPTRELAKQVSEDFQASNPR--LS 218
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
+ C+YGG Y QE +++G+DV++GTPGRI D++++ ++LS LK +LDE D ML MG
Sbjct: 219 TLCVYGGTAYWPQESAIRRGVDVLVGTPGRILDYVQKNTLNLSQLKHVILDEVDRMLDMG 278
Query: 278 FVEDVELILG---KVED-ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKA 333
F + VE IL K+++ QTLLFSATLP WV + K++KS+ K +DL+G +K+K
Sbjct: 279 FADTVEEILSASYKMDNPGENPQTLLFSATLPEWVYRTAKKYMKSEIKRVDLIGQQKLKT 338
Query: 334 STNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESASQL---ADLLPGARAL 389
+T V H+ + C R+ I D+++ YS GR +IFTETK+ A+++ + + + L
Sbjct: 339 ATTVEHLAIRCHYRQRAATISDVVQVYSGKHGRCMIFTETKKDANEMGLSSSIRQDVQVL 398
Query: 390 HGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 449
HGDI Q+QRE+TL GFR GKF LVAT+VAARGLDI +V LI+ CEPP+D E YIHRSGR
Sbjct: 399 HGDIAQNQREITLKGFRDGKFRCLVATDVAARGLDIPEVDLIVMCEPPKDAENYIHRSGR 458
Query: 450 TGRAGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVS 508
TGRAG TGV+V Y P + V K IER +G+KF + APQP DI K + +A +++ V
Sbjct: 459 TGRAGRTGVSVCFYKPNEEHVLKLIERRAGIKFRRVGAPQPEDIIKTSADDALKSLDAVP 518
Query: 509 DSVIPAFKSAAEELLNNSG 527
+S I F AAE+L+ G
Sbjct: 519 ESAIKLFHEAAEKLIEEKG 537
>gi|303277565|ref|XP_003058076.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460733|gb|EEH58027.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 748
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 231/426 (54%), Positives = 294/426 (69%), Gaps = 8/426 (1%)
Query: 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVL 165
+ P VS F IS + +L++KGI SL+ IQA TF VLDG D+V RA+TG GKTLAFVL
Sbjct: 124 DDPLRVSNFNISREVCARLETKGITSLYGIQAQTFQHVLDGKDIVARAKTGCGKTLAFVL 183
Query: 166 PILESLTN-GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
PI+E++ P A+ + GRAP V +L PTRELAKQVH DF G A LT+ C+YGG
Sbjct: 184 PIVEAINREHPVPANGRRAQGRAPVVALLAPTRELAKQVHADFQHIGHAFKLTAICVYGG 243
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
APY Q+ L+ G D+VIGTPGR+KDH+ER + L+FRVLDEADEML MGFVED+E+
Sbjct: 244 APYGDQQRLLRAGCDIVIGTPGRMKDHLERKTLSFDKLRFRVLDEADEMLNMGFVEDIEM 303
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344
IL +D K+QTLLFSATLP WV IS +FL+ D T+DLVG+EK KAS V H++L C
Sbjct: 304 ILNHAKDNEKLQTLLFSATLPKWVADISRRFLQPDHVTVDLVGDEKQKASAAVTHMLLNC 363
Query: 345 SSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLADLLP-----GARALHGDIQQSQR 398
S R++++ D+IR G GR I+F +TK +L + L GA+ALHGD+ Q+QR
Sbjct: 364 QWSERTELVCDLIRAKVPGDGRVIVFCDTKRDCGELQEALQKELEKGAKALHGDVNQAQR 423
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
EV LAGFR+ KF TLVAT+VAARGLDI+ V+L++QCEPP++ E YIHRSGRTGR G TG
Sbjct: 424 EVVLAGFRANKFQTLVATDVAARGLDISGVELVVQCEPPKEPETYIHRSGRTGRGGATGE 483
Query: 459 AVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKS 517
V L PR ++ IER+ G KF+ I+ PQPA++A AA + V+ F
Sbjct: 484 CVTLCTPRNEWAIPNIERKGGFKFQRIAPPQPAEMAAAAAKIVIAQVRAVAKGAAKMFMD 543
Query: 518 AAEELL 523
AA+ELL
Sbjct: 544 AAKELL 549
>gi|196004420|ref|XP_002112077.1| hypothetical protein TRIADDRAFT_55752 [Trichoplax adhaerens]
gi|190585976|gb|EDV26044.1| hypothetical protein TRIADDRAFT_55752 [Trichoplax adhaerens]
Length = 633
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 237/520 (45%), Positives = 314/520 (60%), Gaps = 21/520 (4%)
Query: 60 EEEERSETSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVP 119
EE S + P + ++ K+ + +K+ + E + E + G E +FRIS
Sbjct: 5 HEENTSTMKRKAISPPDGRNHKKHRSSQKSNGDSE--LPEHDSGSMEEKGDFKKFRISSA 62
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+ + LK +GI LFPIQA TFD V DG D++G+ARTG GKTL+F LPI E L K
Sbjct: 63 IADSLKERGITYLFPIQAQTFDYVYDGQDVIGQARTGTGKTLSFALPITEKLI----KKK 118
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
+ R P VLVL PTRELA Q+ +F G+ L C+YGG PY QE L+ GID
Sbjct: 119 RSDDKIRPPKVLVLAPTRELAIQITSEFKALSGS--LKVVCIYGGVPYAEQENHLRNGID 176
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK--VEDANKVQT 297
+VIGTPGRIKDHI+R N+ LS LK VLDE D ML MGF + VE IL V+D + QT
Sbjct: 177 IVIGTPGRIKDHIDRKNLVLSKLKHVVLDEVDRMLDMGFCDIVEEILSHAYVKDRHP-QT 235
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LLFSAT+P W K++KSDKK +DL+G + ++ ST V H V+ C R+ I D++
Sbjct: 236 LLFSATMPKWALKTIDKYMKSDKKIVDLIGKDALRTSTTVEHKVISCPYHERAATIGDLV 295
Query: 358 RCYSSG-GRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTL 413
+ Y RTIIF+ TK+ A++LA L + LHGDIQQ+QREVTL GFR G F L
Sbjct: 296 KVYGGDHARTIIFSPTKKEANELALSSVLKQEVQVLHGDIQQAQREVTLKGFREGNFPCL 355
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP-RKSSVSK 472
VAT+VAARGLDI +V L+IQCEPP+D + YIHRSGRTGRA TG+ + Y P + +
Sbjct: 356 VATDVAARGLDIPEVDLVIQCEPPKDADTYIHRSGRTGRANRTGICITFYKPTHQDRIKS 415
Query: 473 IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAE 532
IE E+G+ F I APQ DI +A +AA+++ V V+ F+S A E++ G A +
Sbjct: 416 IESEAGINFCRIGAPQLGDIIQATSRDAAKSLDSVPAEVLVHFESIASEIIETKG--AVK 473
Query: 533 LLAKALAKAVVSAFLFSSSSNSLSLTSG-TMCFFRLTSEF 571
L+ ALA +S + ++ + LS G T R EF
Sbjct: 474 ALSAALAH--ISGYTSITNRSLLSSREGFTTYVMRSQWEF 511
>gi|390333037|ref|XP_786504.3| PREDICTED: nucleolar RNA helicase 2-like [Strongylocentrotus
purpuratus]
Length = 751
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/437 (48%), Positives = 283/437 (64%), Gaps = 23/437 (5%)
Query: 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVL 165
E A S F I EKL +KG++ LFPIQA TF + DG D++ +ARTG GKTL+FVL
Sbjct: 113 EKIGAFSNFGIRPKTIEKLHAKGVKYLFPIQAQTFKPIDDGFDVIAQARTGTGKTLSFVL 172
Query: 166 PILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA 225
P++E P K+ GR P +L L PTRELAKQ+ E F+ G L++ C+YGG
Sbjct: 173 PLVEKWQQFPQKS------GRQPIILALAPTRELAKQISEYFEAIGPH--LSTTCIYGGT 224
Query: 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285
Y QE +++G+DVV+GTPGRI D+I + +DLS LK VLDE D ML MGF E VE I
Sbjct: 225 SYWPQESAIRRGLDVVVGTPGRILDYIRKNTLDLSKLKHVVLDEVDRMLDMGFAESVEEI 284
Query: 286 LGKV----------EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335
LG E N QTLLFSAT+P WV + K+++ D K +DLVG ++MK +T
Sbjct: 285 LGAAYKTGQPGDGEEAPNNPQTLLFSATVPPWVYQTAVKYMRKDLKKVDLVGRDRMKTAT 344
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLA---DLLPGARALHG 391
V+H+ + CS R QVI D+I+ Y GR ++F ETK A++LA D+ + +HG
Sbjct: 345 TVQHLAINCSYFDRPQVISDVIKVYGGLDGRCMVFCETKRDANELAMSSDVKQETQVMHG 404
Query: 392 DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451
DI Q+QREVTL GFR GKF LV T+VAARGLDI +V L+IQC PPRDV++YIHRSGRTG
Sbjct: 405 DIPQTQREVTLKGFREGKFQCLVTTDVAARGLDIPEVDLVIQCNPPRDVDSYIHRSGRTG 464
Query: 452 RAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDS 510
RAG GV V Y ++ + K+E ++G+KF+ +SAPQP+DI K++ + + + V
Sbjct: 465 RAGRNGVCVCFYKRQEERDLQKVEYKAGIKFKRVSAPQPSDIIKSSVKDVTDLLGAVQPE 524
Query: 511 VIPAFKSAAEELLNNSG 527
++ FKSAAE ++ G
Sbjct: 525 MVAMFKSAAEAIIAEKG 541
>gi|260830758|ref|XP_002610327.1| hypothetical protein BRAFLDRAFT_144535 [Branchiostoma floridae]
gi|229295692|gb|EEN66337.1| hypothetical protein BRAFLDRAFT_144535 [Branchiostoma floridae]
Length = 655
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 213/445 (47%), Positives = 290/445 (65%), Gaps = 25/445 (5%)
Query: 94 EAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRA 153
E G +E G+ E+ FRI+ KLK++ + LFP+Q TFD V DG D++ +A
Sbjct: 81 ENGTITKEEGDFEN------FRITAQTVTKLKARNVVKLFPVQYSTFDFVYDGWDVITQA 134
Query: 154 RTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGA 213
RTG GKTLAF +P++E L + GRAP V+VL PTRELA QV+EDF +
Sbjct: 135 RTGTGKTLAFSIPLVERLQKDGVSIKR----GRAPVVIVLAPTRELAIQVYEDFKSI--S 188
Query: 214 VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273
LTS C+YGG PY Q + +G+D+++GTPGRI+DH+ G ++LS L+ VLDE D M
Sbjct: 189 TKLTSFCVYGGTPYPPQNDAINRGLDILVGTPGRIQDHVRSGRLNLSELRHVVLDEVDRM 248
Query: 274 LRMGFVEDVELIL----GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNE 329
L MG VE V+ IL K + + QTL FSATLP+WV + K++K++ K +D++G E
Sbjct: 249 LEMGMVEQVDEILEAAYKKDDKSQNPQTLFFSATLPNWVHEAARKYMKAEPKHVDMIGTE 308
Query: 330 KMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLPG--- 385
+ +++T V H+ + C AR+ VI DII YS GR ++F ETK+ A+QL +L G
Sbjct: 309 QNRSATTVEHLAIRCGWQARAPVIADIITMYSGQHGRAMVFCETKKEANQL--VLEGVLK 366
Query: 386 --ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAY 443
A+ LHGDI Q+QRE+TL FR G LVAT+VAARGLDI +V L++QCEPP DV++Y
Sbjct: 367 QEAQVLHGDIPQAQRELTLKSFRDGNIQVLVATDVAARGLDIPEVDLVVQCEPPSDVDSY 426
Query: 444 IHRSGRTGRAGNTGVAVMLYDP-RKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAE 502
IHRSGRTGRAG TGV V Y P R+ + +ER +G+KF I+APQP DI KAA ++A
Sbjct: 427 IHRSGRTGRAGRTGVCVCFYKPNREQDLRFVERRAGIKFRQINAPQPDDIVKAAANDSAR 486
Query: 503 TITQVSDSVIPAFKSAAEELLNNSG 527
I +V D ++ F+ AAE+L+ G
Sbjct: 487 AIEEVPDKMLTHFQEAAEKLIAEKG 511
>gi|328774195|gb|EGF84232.1| hypothetical protein BATDEDRAFT_84954 [Batrachochytrium
dendrobatidis JAM81]
Length = 764
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 234/524 (44%), Positives = 322/524 (61%), Gaps = 38/524 (7%)
Query: 45 KKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQ---- 100
K K+S +KR S+ E+ S+ +++ + L+ K K +A E VE+Q
Sbjct: 72 KSKDSKRKRSSSD----EDSSKPTADDDKATKLR--KVSKNDDEATKESAVIVEDQHIDD 125
Query: 101 -----ERGESEHPNAV--SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRA 153
++ ES+ P + S +S+ E LK++GI LFPIQA +FD ++ G DL+GRA
Sbjct: 126 YKSSTKKEESDIPVNLRLSSHNLSLSTIESLKARGIVQLFPIQAASFDPIIKGMDLLGRA 185
Query: 154 RTGQGKTLAFVLPILESLTNGPTKASKKTGY---GRAPSVLVLLPTRELAKQVHEDFDVY 210
RTG GKTLAF LP++E L + S + + GRAP VL++ PTRELA QVH +FD
Sbjct: 186 RTGTGKTLAFSLPMIEVLKR--ERESNRHLFSQRGRAPRVLIMAPTRELAMQVHREFDSI 243
Query: 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270
L S C YGG+PY +Q ++ GIDV++GTPGR+ DHIERG + L+ L+F LDEA
Sbjct: 244 SSG-ELKSTCAYGGSPYDSQCNAMRDGIDVIVGTPGRLIDHIERGTLKLNQLRFICLDEA 302
Query: 271 DEMLRMGFVEDVELILGKVE-------DANKVQTLLFSATLPSWVKHISTKFLKSDKKTI 323
D+ML +GF E +E IL +V+ DA Q LLFSAT+P W+K +K++K +K T+
Sbjct: 303 DQMLDIGFAESMEKILQQVQEQKSKLTDAPDHQVLLFSATMPVWIKQAVSKYMKPNKVTL 362
Query: 324 DLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG--RTIIFTETKESASQLA- 380
DL+G +K K S V+H + RS ++ DI+ Y GG RTIIF ETK A++LA
Sbjct: 363 DLIGTDKQKTSATVKHYAIASHWQNRSALLGDIVAIYGRGGAGRTIIFVETKGEANELAM 422
Query: 381 -DLLP--GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
D L G + LHGDIQQ QREVT+ GFR GKF +L+ TNV ARG+DI +V L+I CEPP
Sbjct: 423 NDKLVTMGTQVLHGDIQQKQREVTMQGFREGKFTSLITTNVCARGVDIPEVDLVINCEPP 482
Query: 438 RDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAA 496
DVE+YIHRSGRTGRAG +G+ V Y P + ++ I R +GV F I APQP DI A
Sbjct: 483 SDVESYIHRSGRTGRAGKSGICVTFYKPNQEYALQNIARHAGVNFIKIGAPQPKDIVAAR 542
Query: 497 GVEAAETI-TQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALA 539
+ ET+ T + + V+ F + A ++L + A + L+ LA
Sbjct: 543 ASDTLETVKTDLDERVLEYFTNCAGDILEHFQGDAIKALSATLA 586
>gi|422294259|gb|EKU21559.1| dead deah box rna [Nannochloropsis gaditana CCMP526]
Length = 737
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 232/521 (44%), Positives = 322/521 (61%), Gaps = 36/521 (6%)
Query: 23 ALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKE 82
AL D A++ E+ S KK K K S + + E+++++ E V ++K
Sbjct: 67 ALTDSSAQSASVVEEDSPNKKRKIKGSQEGADGAGGEKKKKKRAKPEESDAAVKDSAKKT 126
Query: 83 KKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDM 142
KK K +A +A PNA+S F+IS R +L+++GI+SLFPIQ+MT
Sbjct: 127 KKCKTQASETADA-----------DPNALSNFKISQATRTRLEARGIKSLFPIQSMTLQK 175
Query: 143 VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ 202
+LDG DL+GRARTG GKTLAF LP++E + + ++ G P VLVL PTRELAKQ
Sbjct: 176 ILDGCDLIGRARTGCGKTLAFALPVVELIGD------EREERGAPPKVLVLAPTRELAKQ 229
Query: 203 VHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSL 262
V ++F+ A L S C+YGGAPY QE L++G+ VV+GTPGRI DHIERG + LS L
Sbjct: 230 VADEFEACAPAT-LRSVCIYGGAPYRPQEEALRRGVQVVVGTPGRILDHIERGTLKLSGL 288
Query: 263 KFRVLDEADEMLRMGFVEDVELILGKV--EDANKVQTLLFSATLPSWVKHISTKFLKSDK 320
+F +LDEAD ML MGF +D++ + + + + Q LLFSATLP WV+ ++ ++++ DK
Sbjct: 289 RFLILDEADSMLDMGFKDDIQKVCDAMGQDSHQRRQVLLFSATLPPWVQKVAQQYMRKDK 348
Query: 321 KT-IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY--SSGGRTIIFTETKESAS 377
+DLV E KAST+VRH+ +PC S+ + D + Y S+ RTI+F ETK+ +
Sbjct: 349 LVQVDLVQGEDAKASTDVRHVAIPCHWSSMPSTVADCLAVYGGSNKARTIVFCETKKECN 408
Query: 378 QLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ 433
+L + P + ALHGDI Q+QRE TL FR G+ LVAT+VAARGLD+ V L++Q
Sbjct: 409 ELV-VNPVIKTECAALHGDIPQAQRETTLKAFREGRVRVLVATDVAARGLDMT-VDLVVQ 466
Query: 434 CEPP------RDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISA 486
+PP DVE Y+HRSGRTGRAG G+ V L+ P+ + +V +IE G KFE A
Sbjct: 467 NKPPVTASGRTDVETYVHRSGRTGRAGRKGICVTLFSPKYRFAVKEIEGAVGNKFEWAGA 526
Query: 487 PQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
PQPADI A+ + A E + V D V P F++AA +L+ G
Sbjct: 527 PQPADIVAASALAAMEDVANVDDKVFPLFQAAAAKLVEEMG 567
>gi|320164192|gb|EFW41091.1| nucleolar RNA helicase 2 [Capsaspora owczarzaki ATCC 30864]
Length = 793
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 217/464 (46%), Positives = 299/464 (64%), Gaps = 23/464 (4%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A+ F +S L ++GI +LFPIQA T+ + +G D+V +ARTG GKTL+F LP++E
Sbjct: 196 ALKNFGVSATSIANLHAQGIRTLFPIQAQTYHPIFEGKDIVAQARTGSGKTLSFALPVIE 255
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
L P ++ GRAP+VLV+ PTRELA QVH F+ A L S C+YGG Y
Sbjct: 256 RLLKNP-----RSEKGRAPAVLVMAPTRELASQVHRVFESV--APQLASICVYGGVEYGP 308
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG-- 287
QE ++KG+DVV+GTPGR+ DH RGN+ L S+ +LDEAD ML +GF E+V+ I+
Sbjct: 309 QELAMRKGLDVVVGTPGRLIDHYNRGNLSLRSIDVMILDEADRMLEVGFQENVDEIMAGL 368
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
+ DA K + LLFSAT+P+WVK ++ K+ + DK +DLV + ST ++H+ + C
Sbjct: 369 PIGDA-KPRILLFSATMPTWVKALTKKYQREDKVMVDLVSGTDQQTSTTIQHLAIRCPWQ 427
Query: 348 ARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLPG-----ARALHGDIQQSQREVT 401
R+ I D++R YS S GR ++F TKE A+ LA L G LHGDI Q QRE+T
Sbjct: 428 ERANAIGDVVRVYSGSHGRCMVFASTKEEANDLA--LNGRIAGETHVLHGDIAQKQREIT 485
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
LAGFRSGKF LVAT+VAARGLDI +V+L+IQ EPP DVE YIHR+GRTGRAG +G ++
Sbjct: 486 LAGFRSGKFRCLVATDVAARGLDIPEVELVIQTEPPIDVETYIHRAGRTGRAGKSGTCIL 545
Query: 462 LYDPRKSS-VSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y P++ S V +IE ++ + F+ I PQP DI A+ +AA ++ +VS +V P F AAE
Sbjct: 546 FYKPQQESLVRRIEGKARMAFKRIGPPQPQDIVSASANDAARSLAKVSPAVYPLFHQAAE 605
Query: 521 ELLNNSGLSAAELLAKALAKAVVSAFLFSSSSNSLSLTSGTMCF 564
E++ +G A + L+ AL AV+S + + LS G + F
Sbjct: 606 EVIARAG--AVDALSAAL--AVISGVFEIKTRSLLSSMEGYVTF 645
>gi|363735177|ref|XP_421574.3| PREDICTED: nucleolar RNA helicase 2-like [Gallus gallus]
Length = 760
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 226/511 (44%), Positives = 311/511 (60%), Gaps = 31/511 (6%)
Query: 42 KKSKKKESSKKRKESEIEEE--EERSETSSELGEPVNLKSEKEKKKKK------------ 87
KK K++E K+R ++E E+ EE L +P + K K+ +
Sbjct: 111 KKPKRREKLKRRGKAEGEQSAPEESGPGDGGLLQPPSAKKAKKSAEGNGAAEQNGSAPAS 170
Query: 88 ---KAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVL 144
+A E G + +E E A S F +S LK++G++ LFP+Q TF +
Sbjct: 171 GHGEAPAAEEPGSDAEELTEEAREGAFSNFPLSPSTINLLKARGVKYLFPVQVKTFQPIY 230
Query: 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204
DG DL+ +ARTG GKT +F +P+ E L + S+ GR+P VLVL+PTRELA QV
Sbjct: 231 DGKDLIAQARTGTGKTFSFAIPLTEKLQS----VSQDEKRGRSPKVLVLVPTRELAIQVA 286
Query: 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264
+DF L+ C YGG PY AQ LK GID+++GTPGRIKDHI+ +DLS++K
Sbjct: 287 KDFKNL--TRKLSVACFYGGTPYKAQFDLLKNGIDILVGTPGRIKDHIQNSKLDLSNVKH 344
Query: 265 RVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
VLDE D ML MGF E VE ILG K N QTLLFSAT P WV ++ K++K + +
Sbjct: 345 VVLDEVDHMLDMGFAEQVEEILGFAYKKGSENSPQTLLFSATCPRWVYDVAKKYMKGEYE 404
Query: 322 TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA 380
+DL+G + + +T V H+ + C SS R++V+ DII+ YS S GRTI+F ETK+ A++LA
Sbjct: 405 QVDLIGKKTQRTATTVEHLAIQCRSSQRAEVLGDIIQVYSGSHGRTIVFCETKKEANELA 464
Query: 381 ---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
L A++LHGDI Q QREVTL GFR+G F L+ATNVAARGLDI +V L+IQC PP
Sbjct: 465 LNSALKQEAQSLHGDIPQKQREVTLKGFRNGVFEVLIATNVAARGLDIPEVDLVIQCSPP 524
Query: 438 RDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAPQPADIAKAA 496
+DV++YIHRSGRTGRAG TG+ + Y ++ + K +E+++G+ F I P DI KA+
Sbjct: 525 KDVDSYIHRSGRTGRAGRTGICICFYQRKEEDLLKQVEQKAGITFRRIGVPSATDIIKAS 584
Query: 497 GVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
+A + + V S I F+ +A EL+ G
Sbjct: 585 SDDAKKCLDAVPPSAIDYFRQSARELIEEKG 615
>gi|351702495|gb|EHB05414.1| Nucleolar RNA helicase 2 [Heterocephalus glaber]
Length = 777
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 213/448 (47%), Positives = 291/448 (64%), Gaps = 23/448 (5%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK++G+ LFPIQA TF V G D
Sbjct: 167 SEIEQEIPVEQKE-------GAFSNFPISEETVKLLKARGVTFLFPIQAKTFHHVYSGKD 219
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L G + K+ GRAP VLVL PTRELA QV DF
Sbjct: 220 LIAQARTGTGKTFSFAIPLIEKL-QGQLQDRKR---GRAPQVLVLAPTRELANQVSRDFS 275
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L C YGG PY Q +++ GID+++GTPGRIKDH++ G +DLS LK VL
Sbjct: 276 DI---TKKLAVACFYGGTPYGGQIERMRNGIDILVGTPGRIKDHLQNGKLDLSKLKHVVL 332
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF E VE IL K + + QTLLFSAT PSWV +++ K++KS + +D
Sbjct: 333 DEVDQMLDMGFAEQVEDILCVAYKKDSEDNPQTLLFSATCPSWVFNVAKKYMKSIYEQVD 392
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESA---SQLA 380
L+G + K + V H+ + C + R+ VI D+IR YS GRTI+F ETK+ A SQ A
Sbjct: 393 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIVFCETKKEAQELSQNA 452
Query: 381 DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F +VATNVAARGLDI +V L++Q PP+DV
Sbjct: 453 SIKQDAQSLHGDIPQKQREITLKGFRNGDFGVMVATNVAARGLDIPEVDLVVQSCPPKDV 512
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVE 499
E+YIHRSGRTGRAG TGV + Y ++ ++++E+++G+KF+ I P P +I KA+ +
Sbjct: 513 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSPTEIIKASSKD 572
Query: 500 AAETITQVSDSVIPAFKSAAEELLNNSG 527
A + V + I FK +AE+L+ G
Sbjct: 573 AIRLLDSVPPTAIGHFKQSAEKLIEEKG 600
>gi|440895815|gb|ELR47909.1| Nucleolar RNA helicase 2, partial [Bos grunniens mutus]
Length = 680
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 213/456 (46%), Positives = 294/456 (64%), Gaps = 23/456 (5%)
Query: 81 KEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTF 140
KE ++ +++E E VE++E A S F IS + LK++G+ LFPIQA TF
Sbjct: 166 KEAASEENSELEQEMTVEQKE-------GAFSNFPISEETIKLLKARGVTFLFPIQAKTF 218
Query: 141 DMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200
V G DL+ +ARTG GKT +F +P++E L G + K+ GRAP VLVL PTRELA
Sbjct: 219 HHVYSGKDLIAQARTGTGKTFSFAIPLVEKLL-GELQDRKR---GRAPQVLVLAPTRELA 274
Query: 201 KQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDL 259
QV DF D+ L C YGG PY Q ++K GID+++GTPGRIKDH++ G +DL
Sbjct: 275 SQVSRDFSDI---TKKLAVACFYGGTPYGGQIERMKNGIDILVGTPGRIKDHLQNGKLDL 331
Query: 260 SSLKFRVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFL 316
+ LK VLDE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++
Sbjct: 332 TKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPYWVFNVAKKYM 391
Query: 317 KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKES 375
KS + +DL+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+
Sbjct: 392 KSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFQGRTIIFCETKKE 451
Query: 376 ASQLAD---LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLII 432
A +L+ + A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++
Sbjct: 452 AQELSQNVAVRQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVV 511
Query: 433 QCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPAD 491
Q PP+DVE+YIHRSGRTGRAG TGV + Y ++ ++++E+++G+KF+ I P P +
Sbjct: 512 QSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSPTE 571
Query: 492 IAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
I KA+ +A + V + I FK +AE+L+ G
Sbjct: 572 IIKASSKDAIRLLDSVPPTAIGHFKQSAEKLIEEKG 607
>gi|134085663|ref|NP_001076996.1| nucleolar RNA helicase 2 [Bos taurus]
gi|133778115|gb|AAI23649.1| DDX21 protein [Bos taurus]
gi|296472163|tpg|DAA14278.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Bos taurus]
Length = 784
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 213/456 (46%), Positives = 294/456 (64%), Gaps = 23/456 (5%)
Query: 81 KEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTF 140
KE ++ +++E E VE++E A S F IS + LK++G+ LFPIQA TF
Sbjct: 166 KEAASEENSELEQEMTVEQKE-------GAFSNFPISEETIKLLKARGVTFLFPIQAKTF 218
Query: 141 DMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200
V G DL+ +ARTG GKT +F +P++E L G + K+ GRAP VLVL PTRELA
Sbjct: 219 HHVYSGKDLIAQARTGTGKTFSFAIPLVEKLL-GELQDRKR---GRAPQVLVLAPTRELA 274
Query: 201 KQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDL 259
QV DF D+ L C YGG PY Q ++K GID+++GTPGRIKDH++ G +DL
Sbjct: 275 SQVSRDFSDI---TKKLAVACFYGGTPYGGQIERMKNGIDILVGTPGRIKDHLQNGKLDL 331
Query: 260 SSLKFRVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFL 316
+ LK VLDE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++
Sbjct: 332 TKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPYWVFNVAKKYM 391
Query: 317 KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKES 375
KS + +DL+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+
Sbjct: 392 KSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFQGRTIIFCETKKE 451
Query: 376 ASQLAD---LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLII 432
A +L+ + A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++
Sbjct: 452 AQELSQNVAVRQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVV 511
Query: 433 QCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPAD 491
Q PP+DVE+YIHRSGRTGRAG TGV + Y ++ ++++E+++G+KF+ I P P +
Sbjct: 512 QSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSPTE 571
Query: 492 IAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
I KA+ +A + V + I FK +AE+L+ G
Sbjct: 572 IIKASSKDAIRLLDSVPPTAIGHFKQSAEKLIEEKG 607
>gi|74211590|dbj|BAE26522.1| unnamed protein product [Mus musculus]
Length = 851
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 210/439 (47%), Positives = 287/439 (65%), Gaps = 18/439 (4%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E
Sbjct: 259 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIE 318
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L G + + GRAP VLVL PTRELA QV +DF D+ L+ C YGG PY
Sbjct: 319 KLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDFSDI---TKKLSVACFYGGTPYG 371
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF + VE IL
Sbjct: 372 GQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCV 431
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV +++ K++KS + +DL+G + KA+ V H+ + C
Sbjct: 432 AYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCH 491
Query: 346 SSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVT 401
+ R+ VI D+IR YS GRTIIF ETK+ A +L+ + A++LHGDI Q QRE+T
Sbjct: 492 WTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREIT 551
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG TGV +
Sbjct: 552 LKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCIC 611
Query: 462 LYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y ++ ++++E+++G+KF+ I P +I KA+ +A + V + I FK +AE
Sbjct: 612 FYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAE 671
Query: 521 ELLNNSGLSAAELLAKALA 539
+L+ G E LA ALA
Sbjct: 672 KLIEEKG--DVEALAAALA 688
>gi|301755880|ref|XP_002913778.1| PREDICTED: nucleolar RNA helicase 2-like [Ailuropoda melanoleuca]
Length = 794
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 208/448 (46%), Positives = 290/448 (64%), Gaps = 23/448 (5%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS P + LK++G+ LFPIQA TF V G D
Sbjct: 175 SELEQEIPVEQKE-------GAFSNFPISEPTIKLLKARGVTFLFPIQAKTFHHVYSGKD 227
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L G + K+ GRAP VLVL PTRELA QV DF
Sbjct: 228 LIAQARTGTGKTFSFAIPLIEKL-QGEMQDRKR---GRAPQVLVLAPTRELANQVSRDFS 283
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L C YGG PY Q +++ GID+++GTPGRIKDH++ G +DL+ LK VL
Sbjct: 284 DI---TRKLAVACFYGGTPYGGQIERMRNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVL 340
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 341 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVD 400
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 401 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNV 460
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++Q PP+DV
Sbjct: 461 SIKQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDV 520
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVE 499
E+YIHRSGRTGRAG TG+ + Y ++ ++++E+++G+KF+ I P +I KA+ +
Sbjct: 521 ESYIHRSGRTGRAGRTGICICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKD 580
Query: 500 AAETITQVSDSVIPAFKSAAEELLNNSG 527
A + V + + FK +AE+L+ G
Sbjct: 581 AIRLLDSVPPTAVSHFKQSAEKLIEEKG 608
>gi|281346961|gb|EFB22545.1| hypothetical protein PANDA_001614 [Ailuropoda melanoleuca]
Length = 765
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 208/448 (46%), Positives = 290/448 (64%), Gaps = 23/448 (5%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS P + LK++G+ LFPIQA TF V G D
Sbjct: 146 SELEQEIPVEQKE-------GAFSNFPISEPTIKLLKARGVTFLFPIQAKTFHHVYSGKD 198
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L G + K+ GRAP VLVL PTRELA QV DF
Sbjct: 199 LIAQARTGTGKTFSFAIPLIEKL-QGEMQDRKR---GRAPQVLVLAPTRELANQVSRDFS 254
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L C YGG PY Q +++ GID+++GTPGRIKDH++ G +DL+ LK VL
Sbjct: 255 DI---TRKLAVACFYGGTPYGGQIERMRNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVL 311
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 312 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVD 371
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 372 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNV 431
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++Q PP+DV
Sbjct: 432 SIKQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDV 491
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVE 499
E+YIHRSGRTGRAG TG+ + Y ++ ++++E+++G+KF+ I P +I KA+ +
Sbjct: 492 ESYIHRSGRTGRAGRTGICICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKD 551
Query: 500 AAETITQVSDSVIPAFKSAAEELLNNSG 527
A + V + + FK +AE+L+ G
Sbjct: 552 AIRLLDSVPPTAVSHFKQSAEKLIEEKG 579
>gi|198285649|gb|ACH85363.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Salmo salar]
Length = 611
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 211/464 (45%), Positives = 295/464 (63%), Gaps = 21/464 (4%)
Query: 89 AKVEPEAGVEEQERG-ESEHP----NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMV 143
A P E+ + G E+E P A S FRIS + L+++GI LF IQ TF+ V
Sbjct: 8 AATTPAQSSEDSDSGKETETPEQKEGAFSNFRISPNTIKLLQARGISYLFDIQTQTFNSV 67
Query: 144 LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203
+G D++G+ARTG GKTLAF +P++E L N P + GRAP +L L PTRELA QV
Sbjct: 68 YEGKDVIGQARTGTGKTLAFAIPLIEKLQNDPDDKRR----GRAPKILCLAPTRELAIQV 123
Query: 204 HEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLK 263
+DF + +T C YGG+ Y+ Q ++ GID+++GTPGRIKDH++ +DLS LK
Sbjct: 124 SKDFKDMTKKLSVT--CFYGGSSYNPQLDAIRSGIDILVGTPGRIKDHLQNNKLDLSQLK 181
Query: 264 FRVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDK 320
VLDE D+ML MGF E VE IL + + QTLLFSAT PSWV ++ ++++
Sbjct: 182 HVVLDEVDQMLDMGFAEQVEEILSASYQKDSETNPQTLLFSATCPSWVYDVAKRYMRPTY 241
Query: 321 KTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQL 379
+ +DL+G + KA+T V H+ + C S R+ VI D+++ YS S GRTI+F ETK+ A++L
Sbjct: 242 EHVDLIGKKTQKAATTVEHLAIACHWSQRAAVIGDVVQVYSGSHGRTIVFCETKKDANEL 301
Query: 380 ---ADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEP 436
A + +++LHGDI Q QRE+TL GFRSG F LVATNVAARGLDI +V L++QC P
Sbjct: 302 SMNASIKQSSQSLHGDIPQKQREITLKGFRSGTFEVLVATNVAARGLDIPEVDLVVQCSP 361
Query: 437 PRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKA 495
P+DVE+YIHRSGRTGRAG TGV + Y + + + +E+++G+ F+ + P DI K+
Sbjct: 362 PKDVESYIHRSGRTGRAGRTGVCICFYQRKEEDQLRYVEQKAGITFKRVGVPTANDIIKS 421
Query: 496 AGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALA 539
+ +A + V I F+ +A +L+ G A E L+ ALA
Sbjct: 422 SSKDAVRFLDSVPPQAIEYFRVSATKLIEERG--AVEALSAALA 463
>gi|355782883|gb|EHH64804.1| hypothetical protein EGM_18115 [Macaca fascicularis]
Length = 783
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 217/461 (47%), Positives = 293/461 (63%), Gaps = 18/461 (3%)
Query: 88 KAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGS 147
KA E G +QE + A S F IS + LK +G+ LFPIQA TF V G
Sbjct: 165 KAASEESNGDIDQEISVEQKEGAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGK 224
Query: 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207
DL+ +ARTG GKT +F +P++E L +G + K+ GR P VLVL PTRELA QV +DF
Sbjct: 225 DLIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRPPQVLVLAPTRELANQVSKDF 280
Query: 208 -DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK V
Sbjct: 281 SDI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQSGKLDLTKLKHVV 337
Query: 267 LDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTI 323
LDE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +
Sbjct: 338 LDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQV 397
Query: 324 DLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD- 381
DL+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 398 DLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQN 457
Query: 382 --LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRD 439
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+D
Sbjct: 458 SAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKD 517
Query: 440 VEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGV 498
VE+YIHRSGRTGRAG TGV + Y ++ + ++E+++G+KF+ I P +I KA+
Sbjct: 518 VESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSK 577
Query: 499 EAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALA 539
+A + V + I FK +AE+L+ G A E LA LA
Sbjct: 578 DAIRLLDSVPPTAISHFKQSAEKLIEEKG--AVEALAATLA 616
>gi|384496820|gb|EIE87311.1| hypothetical protein RO3G_12022 [Rhizopus delemar RA 99-880]
Length = 665
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 225/500 (45%), Positives = 305/500 (61%), Gaps = 25/500 (5%)
Query: 36 EKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKKKKKAKVEPEA 95
E SD++ K K+ S+KR + +E +S S E PV E + KK+ VE
Sbjct: 9 EDRSDRRDKKDKQRSRKR-----DRDERKSSPSQEESTPVPSSPVPEPESKKRKVVE--- 60
Query: 96 GVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRART 155
E S+ A+S FRIS E L+ KGI SLF IQA TFD + DG D++ RART
Sbjct: 61 -----ETDNSDEKLALSNFRISEGTIENLEKKGISSLFEIQAATFDTIYDGKDVLARART 115
Query: 156 GQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG 215
G GKTLAF +P++E L ++ GR+P VLVL PTR+LAKQV DF+ G
Sbjct: 116 GTGKTLAFAIPVVERLALDKNYRERR---GRSPRVLVLCPTRDLAKQVCGDFEQVSGN-R 171
Query: 216 LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275
L + +YGG PY+ Q ++G+DVV+GTPGRI DHI+ GN+ L LKF VLDEADEML
Sbjct: 172 LKTLPVYGGVPYNEQTSVFREGVDVVVGTPGRILDHIKFGNMKLHDLKFIVLDEADEMLD 231
Query: 276 M-GFVEDVELILGKVEDANKV---QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKM 331
GF ED+ +L +++ + QTLLFSAT+P V +FLK D + IDL+GN K
Sbjct: 232 ARGFEEDMFNLLSSIQEQKETRDYQTLLFSATVPESVMQTIQRFLKEDYERIDLIGNAKN 291
Query: 332 KASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA---DLLPGARA 388
+ +TN+RHI +P S R+ +I D++ Y G T+IF TK A++L + A
Sbjct: 292 RTNTNIRHIAMPSSYHTRADIIGDVVNVYGRSGLTVIFCATKADANELGAHDKIKQDAAV 351
Query: 389 LHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSG 448
LHGDI Q+ RE T+ FR GK+ +V T+V ARGLDI V L+I C+PP+D E Y+HRSG
Sbjct: 352 LHGDIAQASREATMKAFREGKYKCIVCTDVLARGLDIPQVDLVINCQPPKDPETYVHRSG 411
Query: 449 RTGRAGNTGVAVMLYDPRKSS-VSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQV 507
RTGRAG +GV V Y P + +S I + +GV+FE +SAP+P DI +A +A ++I V
Sbjct: 412 RTGRAGRSGVCVTFYKPAEEGLLSYISKRTGVQFEQLSAPRPEDIIEATTEDAFKSIDLV 471
Query: 508 SDSVIPAFKSAAEELLNNSG 527
V+P F+ A+EL++ G
Sbjct: 472 KPDVLPFFEKPAQELIDKHG 491
>gi|451172075|ref|NP_001263383.1| nucleolar RNA helicase 2 [Ovis aries]
Length = 783
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 213/456 (46%), Positives = 293/456 (64%), Gaps = 23/456 (5%)
Query: 81 KEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTF 140
KE ++ +++E E VE++E A S F IS + LK++G+ LFPIQA TF
Sbjct: 165 KEAASEENSELEQEMTVEQKE-------GAFSNFPISEETIKLLKARGVTFLFPIQAKTF 217
Query: 141 DMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200
V G DL+ +ARTG GKT +F +P++E L G + K+ GRAP VLVL PTRELA
Sbjct: 218 HHVYSGKDLIAQARTGTGKTFSFAIPLVEKLL-GELQDRKR---GRAPQVLVLAPTRELA 273
Query: 201 KQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDL 259
QV DF D+ L C YGG PY Q ++K GID+++GTPGRIKDH++ G +DL
Sbjct: 274 SQVSRDFSDI---TKKLAVACFYGGTPYGGQIERMKNGIDILVGTPGRIKDHLQNGKLDL 330
Query: 260 SSLKFRVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFL 316
+ LK VLDE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++
Sbjct: 331 TKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPYWVFNVAKKYM 390
Query: 317 KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKES 375
KS + +DL+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+
Sbjct: 391 KSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFQGRTIIFCETKKE 450
Query: 376 ASQLAD---LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLII 432
A +L+ + A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++
Sbjct: 451 AQELSQNVAIRQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVV 510
Query: 433 QCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPAD 491
Q PP+DVE+YIHRSGRTGRAG TGV + Y ++ + ++E+++G+KF+ I P P +
Sbjct: 511 QSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSPTE 570
Query: 492 IAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
I KA+ +A + V + I FK +AE+L+ G
Sbjct: 571 IIKASSKDAIRLLDSVPPTAIGHFKQSAEKLIEEKG 606
>gi|417404608|gb|JAA49048.1| Putative nucleolar rna helicase 2 [Desmodus rotundus]
Length = 785
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 211/448 (47%), Positives = 290/448 (64%), Gaps = 23/448 (5%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK++G+ LFPIQA TF V G D
Sbjct: 175 SELEQEIPVEQKE-------GAFSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKD 227
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L G + K+ GRAP VLVL PTRELA QV +DF
Sbjct: 228 LIAQARTGTGKTFSFAIPLIEKLL-GELQERKR---GRAPQVLVLAPTRELANQVSKDFI 283
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L C YGG PY Q +++ GID+++GTPGRIKDH++ G +DL+ LK VL
Sbjct: 284 DI---TKKLAVACFYGGTPYGGQLERMRNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVL 340
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 341 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 400
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESA---SQLA 380
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A SQ A
Sbjct: 401 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNA 460
Query: 381 DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++Q PP+DV
Sbjct: 461 SIRQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDV 520
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVE 499
E+YIHRSGRTGRAG TGV + Y ++ ++++E+++G+KF+ I P +I KA+ +
Sbjct: 521 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKD 580
Query: 500 AAETITQVSDSVIPAFKSAAEELLNNSG 527
A + V + I FK +AE+L+ G
Sbjct: 581 AIRLLDSVPPTAISHFKQSAEKLIEEKG 608
>gi|417404458|gb|JAA48981.1| Putative nucleolar rna helicase 2 [Desmodus rotundus]
Length = 765
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 211/448 (47%), Positives = 290/448 (64%), Gaps = 23/448 (5%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK++G+ LFPIQA TF V G D
Sbjct: 175 SELEQEIPVEQKE-------GAFSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKD 227
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L G + K+ GRAP VLVL PTRELA QV +DF
Sbjct: 228 LIAQARTGTGKTFSFAIPLIEKLL-GELQERKR---GRAPQVLVLAPTRELANQVSKDFI 283
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L C YGG PY Q +++ GID+++GTPGRIKDH++ G +DL+ LK VL
Sbjct: 284 DI---TKKLAVACFYGGTPYGGQLERMRNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVL 340
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 341 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 400
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESA---SQLA 380
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A SQ A
Sbjct: 401 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNA 460
Query: 381 DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++Q PP+DV
Sbjct: 461 SIRQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDV 520
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVE 499
E+YIHRSGRTGRAG TGV + Y ++ ++++E+++G+KF+ I P +I KA+ +
Sbjct: 521 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKD 580
Query: 500 AAETITQVSDSVIPAFKSAAEELLNNSG 527
A + V + I FK +AE+L+ G
Sbjct: 581 AIRLLDSVPPTAISHFKQSAEKLIEEKG 608
>gi|395501396|ref|XP_003755081.1| PREDICTED: nucleolar RNA helicase 2 [Sarcophilus harrisii]
Length = 798
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 206/438 (47%), Positives = 288/438 (65%), Gaps = 16/438 (3%)
Query: 99 EQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQG 158
EQE + A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG G
Sbjct: 142 EQELSAEQKEGAFSNFPISEETIQLLKARGVTYLFPIQAKTFHHVSSGKDLIAQARTGTG 201
Query: 159 KTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLT 217
KT +F +P++E L G T+ + GRAP +LVL PTREL+ QV +DF D+ LT
Sbjct: 202 KTFSFAIPLIEKL-QGDTQPRAR---GRAPKILVLAPTRELSIQVSKDFSDI---TRKLT 254
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
C YGG PY+ Q +++GID+++GTPGRIKDH++ G +DLS ++ VLDE D+ML MG
Sbjct: 255 VACFYGGTPYNGQIDLIRRGIDILVGTPGRIKDHLQNGRLDLSKVQHVVLDEVDQMLDMG 314
Query: 278 FVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAS 334
F E VE IL K + + QTLLFSAT P WV ++ K++KS + +DL+G + KA+
Sbjct: 315 FAEQVEEILTVAYKKDSEDNPQTLLFSATCPHWVYDVAKKYMKSTYEQVDLIGKKTQKAA 374
Query: 335 TNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALH 390
V H+ + C S R+ VI D+I+ YS S GRTIIF ETK+ A +L+ + A++LH
Sbjct: 375 VTVEHLAINCHWSQRAAVIGDVIQVYSGSHGRTIIFCETKKEAQELSLNESIKQDAQSLH 434
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
GDI Q QRE+TL GFR+GKF LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRT
Sbjct: 435 GDIPQKQREITLQGFRNGKFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRT 494
Query: 451 GRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSD 509
GRAG TG+ + Y + + ++++ER++G+ F+ + P ++I KA+ +A + V
Sbjct: 495 GRAGRTGICICFYQKKEQHQLAQVERQAGITFKRVGVPSASEIIKASSKDAIRFLDSVPP 554
Query: 510 SVIPAFKSAAEELLNNSG 527
+ I F+ A++L++ G
Sbjct: 555 AAINNFRQTAQKLIDEKG 572
>gi|81295381|ref|NP_001032278.1| nucleolar RNA helicase 2 [Rattus norvegicus]
gi|123780397|sp|Q3B8Q1.1|DDX21_RAT RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
protein 21; AltName: Full=Gu-alpha; AltName:
Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
RNA helicase II; AltName: Full=RH II/Gu
gi|77748254|gb|AAI05879.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Rattus norvegicus]
gi|149038676|gb|EDL92965.1| rCG22008, isoform CRA_b [Rattus norvegicus]
Length = 782
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 209/448 (46%), Positives = 290/448 (64%), Gaps = 23/448 (5%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
++ E E VE++E A S F IS + LK++G+ LFPIQA TF V G D
Sbjct: 169 SETEKEIPVEQKE-------GAFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKD 221
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L G + + GRAP VLVL PTRELA QV +DF
Sbjct: 222 LIAQARTGTGKTFSFAIPLIEKLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDFS 277
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDH++ G +DL+ LK VL
Sbjct: 278 DI---TKKLSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVL 334
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 335 DEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 394
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD-- 381
L+G + KA+ V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 395 LIGKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNT 454
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++Q PP+DV
Sbjct: 455 CIKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDV 514
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVE 499
E+YIHRSGRTGRAG TGV + Y ++ ++++E+++G+KF+ I P +I KA+ +
Sbjct: 515 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKD 574
Query: 500 AAETITQVSDSVIPAFKSAAEELLNNSG 527
A + V + I FK +AE+L+ G
Sbjct: 575 AIRLLDSVPPTAIGHFKQSAEKLIEEKG 602
>gi|397489922|ref|XP_003815960.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Pan paniscus]
Length = 783
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 211/448 (47%), Positives = 290/448 (64%), Gaps = 23/448 (5%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK +G+ LFPIQA TF V G D
Sbjct: 173 SEIEQEIPVEQKE-------GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKD 225
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L +G + K+ GRAP VLVL PTRELA QV +DF
Sbjct: 226 LIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRAPQVLVLAPTRELANQVSKDFS 281
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK VL
Sbjct: 282 DI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVL 338
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 339 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 398
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 399 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNS 458
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 459 AIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 518
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVE 499
E+YIHRSGRTGRAG TGV + Y ++ + ++E+++G+KF+ I P +I KA+ +
Sbjct: 519 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKD 578
Query: 500 AAETITQVSDSVIPAFKSAAEELLNNSG 527
A + V + I FK +AE+L+ G
Sbjct: 579 AIRLLDSVPPTAISHFKQSAEKLIEEKG 606
>gi|114630811|ref|XP_507825.2| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Pan troglodytes]
gi|410222082|gb|JAA08260.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410252906|gb|JAA14420.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410252908|gb|JAA14421.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410252910|gb|JAA14422.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410292262|gb|JAA24731.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
Length = 783
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 211/448 (47%), Positives = 290/448 (64%), Gaps = 23/448 (5%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK +G+ LFPIQA TF V G D
Sbjct: 173 SEIEQEIPVEQKE-------GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKD 225
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L +G + K+ GRAP VLVL PTRELA QV +DF
Sbjct: 226 LIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRAPQVLVLAPTRELANQVSKDFS 281
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK VL
Sbjct: 282 DI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVL 338
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 339 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 398
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 399 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNS 458
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 459 AIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 518
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVE 499
E+YIHRSGRTGRAG TGV + Y ++ + ++E+++G+KF+ I P +I KA+ +
Sbjct: 519 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKD 578
Query: 500 AAETITQVSDSVIPAFKSAAEELLNNSG 527
A + V + I FK +AE+L+ G
Sbjct: 579 AIRLLDSVPPTAISHFKQSAEKLIEEKG 606
>gi|397489924|ref|XP_003815961.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Pan paniscus]
Length = 715
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 211/448 (47%), Positives = 290/448 (64%), Gaps = 23/448 (5%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK +G+ LFPIQA TF V G D
Sbjct: 105 SEIEQEIPVEQKE-------GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKD 157
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L +G + K+ GRAP VLVL PTRELA QV +DF
Sbjct: 158 LIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRAPQVLVLAPTRELANQVSKDFS 213
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK VL
Sbjct: 214 DI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVL 270
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 271 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 330
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 331 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNS 390
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 391 AIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 450
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVE 499
E+YIHRSGRTGRAG TGV + Y ++ + ++E+++G+KF+ I P +I KA+ +
Sbjct: 451 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKD 510
Query: 500 AAETITQVSDSVIPAFKSAAEELLNNSG 527
A + V + I FK +AE+L+ G
Sbjct: 511 AIRLLDSVPPTAISHFKQSAEKLIEEKG 538
>gi|426364956|ref|XP_004049557.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Gorilla gorilla
gorilla]
Length = 783
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 211/448 (47%), Positives = 290/448 (64%), Gaps = 23/448 (5%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK +G+ LFPIQA TF V G D
Sbjct: 173 SEIEQEIPVEQKE-------GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKD 225
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L +G + K+ GRAP VLVL PTRELA QV +DF
Sbjct: 226 LIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRAPQVLVLAPTRELANQVSKDFS 281
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK VL
Sbjct: 282 DI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVL 338
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 339 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 398
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 399 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNS 458
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 459 AIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 518
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVE 499
E+YIHRSGRTGRAG TGV + Y ++ + ++E+++G+KF+ I P +I KA+ +
Sbjct: 519 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKD 578
Query: 500 AAETITQVSDSVIPAFKSAAEELLNNSG 527
A + V + I FK +AE+L+ G
Sbjct: 579 AIRLLDSVPPTAISHFKQSAEKLIEEKG 606
>gi|50659095|ref|NP_004719.2| nucleolar RNA helicase 2 isoform 1 [Homo sapiens]
gi|76803555|sp|Q9NR30.5|DDX21_HUMAN RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
protein 21; AltName: Full=Gu-alpha; AltName:
Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
RNA helicase II; AltName: Full=RH II/Gu
gi|31455230|gb|AAH08071.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapiens]
gi|119574691|gb|EAW54306.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_b [Homo
sapiens]
gi|261858100|dbj|BAI45572.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
Length = 783
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 211/448 (47%), Positives = 290/448 (64%), Gaps = 23/448 (5%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK +G+ LFPIQA TF V G D
Sbjct: 173 SEIEQEIPVEQKE-------GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKD 225
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L +G + K+ GRAP VLVL PTRELA QV +DF
Sbjct: 226 LIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRAPQVLVLAPTRELANQVSKDFS 281
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK VL
Sbjct: 282 DI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVL 338
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 339 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 398
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 399 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNS 458
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 459 AIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 518
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVE 499
E+YIHRSGRTGRAG TGV + Y ++ + ++E+++G+KF+ I P +I KA+ +
Sbjct: 519 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKD 578
Query: 500 AAETITQVSDSVIPAFKSAAEELLNNSG 527
A + V + I FK +AE+L+ G
Sbjct: 579 AIRLLDSVPPTAISHFKQSAEKLIEEKG 606
>gi|332834196|ref|XP_003312635.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Pan troglodytes]
Length = 715
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 211/448 (47%), Positives = 290/448 (64%), Gaps = 23/448 (5%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK +G+ LFPIQA TF V G D
Sbjct: 105 SEIEQEIPVEQKE-------GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKD 157
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L +G + K+ GRAP VLVL PTRELA QV +DF
Sbjct: 158 LIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRAPQVLVLAPTRELANQVSKDFS 213
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK VL
Sbjct: 214 DI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVL 270
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 271 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 330
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 331 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNS 390
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 391 AIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 450
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVE 499
E+YIHRSGRTGRAG TGV + Y ++ + ++E+++G+KF+ I P +I KA+ +
Sbjct: 451 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKD 510
Query: 500 AAETITQVSDSVIPAFKSAAEELLNNSG 527
A + V + I FK +AE+L+ G
Sbjct: 511 AIRLLDSVPPTAISHFKQSAEKLIEEKG 538
>gi|379317177|ref|NP_001243839.1| nucleolar RNA helicase 2 isoform 2 [Homo sapiens]
gi|51476855|emb|CAH18395.1| hypothetical protein [Homo sapiens]
gi|119574692|gb|EAW54307.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_c [Homo
sapiens]
gi|123993911|gb|ABM84557.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
gi|124000685|gb|ABM87851.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
gi|189054973|dbj|BAG37957.1| unnamed protein product [Homo sapiens]
Length = 715
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 211/448 (47%), Positives = 290/448 (64%), Gaps = 23/448 (5%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK +G+ LFPIQA TF V G D
Sbjct: 105 SEIEQEIPVEQKE-------GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKD 157
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L +G + K+ GRAP VLVL PTRELA QV +DF
Sbjct: 158 LIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRAPQVLVLAPTRELANQVSKDFS 213
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK VL
Sbjct: 214 DI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVL 270
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 271 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 330
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 331 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNS 390
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 391 AIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 450
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVE 499
E+YIHRSGRTGRAG TGV + Y ++ + ++E+++G+KF+ I P +I KA+ +
Sbjct: 451 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKD 510
Query: 500 AAETITQVSDSVIPAFKSAAEELLNNSG 527
A + V + I FK +AE+L+ G
Sbjct: 511 AIRLLDSVPPTAISHFKQSAEKLIEEKG 538
>gi|326923424|ref|XP_003207936.1| PREDICTED: hypothetical protein LOC100542017, partial [Meleagris
gallopavo]
Length = 1461
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 208/451 (46%), Positives = 290/451 (64%), Gaps = 18/451 (3%)
Query: 98 EEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQ 157
+EQE E + A S F IS + L+++G+ LFP+Q TF V G D++ +A+TG
Sbjct: 859 QEQEMTEEQKEGAFSNFPISKGTVQLLQARGVTYLFPVQVKTFHPVYSGKDVIAQAQTGT 918
Query: 158 GKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGL 216
GKT +F +P++E L S++ GR+P VLVL PTRELA QV +DF D+ L
Sbjct: 919 GKTFSFAIPLIEKLQAD----SQERRRGRSPKVLVLAPTRELANQVAKDFKDI---TRKL 971
Query: 217 TSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM 276
T C YGG PY+ Q ++ GID+++GTPGRIKDH++ G +DL+ +K VLDE D+ML M
Sbjct: 972 TVACFYGGTPYNGQIDLIRSGIDILVGTPGRIKDHLQNGKLDLTKVKHVVLDEVDQMLDM 1031
Query: 277 GFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKA 333
GF E VE IL K + + QTLLFSAT P+WV ++ K++KS + +DL+G KA
Sbjct: 1032 GFAEQVEDILRVAYKKDSEDNPQTLLFSATCPNWVYDVAKKYMKSKYEQVDLIGRRTQKA 1091
Query: 334 STNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARAL 389
+T V H+ + C S R+ VI D+I+ YS S GRTI+F ETK+ A++LA + ++L
Sbjct: 1092 ATTVEHLAIECHWSQRAAVIGDVIQVYSGSHGRTIVFCETKKDANELALNASIKQDCQSL 1151
Query: 390 HGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 449
HGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGR
Sbjct: 1152 HGDIPQKQREITLKGFRNGAFKVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGR 1211
Query: 450 TGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVS 508
TGRAG TG+ + Y + ++ + +E+++G+ F+ + P DI KA+ +A + V
Sbjct: 1212 TGRAGRTGICICFYQRKEENQLRYVEQKAGITFKRVGVPTATDIIKASSKDAIRCLDSVP 1271
Query: 509 DSVIPAFKSAAEELLNNSGLSAAELLAKALA 539
S I FK +A+ L+ G A LA ALA
Sbjct: 1272 QSAIDYFKESAQLLIEEKGPVNA--LAAALA 1300
>gi|37748194|gb|AAH59237.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Mus musculus]
Length = 851
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 204/427 (47%), Positives = 281/427 (65%), Gaps = 16/427 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E
Sbjct: 259 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIE 318
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L G + + GRAP VLVL PTRELA QV +DF D+ L+ C YGG PY
Sbjct: 319 KLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDFSDI---TKKLSVACFYGGTPYG 371
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF + VE IL
Sbjct: 372 GQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCV 431
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV +++ K++KS + +DL+G + KA+ V H+ + C
Sbjct: 432 AYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCH 491
Query: 346 SSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVT 401
+ R+ VI D+IR YS GRTIIF ETK+ A +L+ + A++LHGDI Q QRE+T
Sbjct: 492 WTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREIT 551
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG TGV +
Sbjct: 552 LKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCIC 611
Query: 462 LYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y ++ ++++E+++G+KF+ I P +I KA+ +A + V + I FK +AE
Sbjct: 612 FYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAE 671
Query: 521 ELLNNSG 527
+L+ G
Sbjct: 672 KLIEEKG 678
>gi|16975510|gb|AAD43959.3|AF159131_1 nucleolar RNA helicase II/Gu [Mus musculus]
Length = 851
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 204/427 (47%), Positives = 281/427 (65%), Gaps = 16/427 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E
Sbjct: 259 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIE 318
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L G + + GRAP VLVL PTRELA QV +DF D+ L+ C YGG PY
Sbjct: 319 KLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDFSDI---TKKLSVACFYGGTPYG 371
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF + VE IL
Sbjct: 372 GQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCV 431
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV +++ K++KS + +DL+G + KA+ V H+ + C
Sbjct: 432 AYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCH 491
Query: 346 SSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVT 401
+ R+ VI D+IR YS GRTIIF ETK+ A +L+ + A++LHGDI Q QRE+T
Sbjct: 492 WTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREIT 551
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG TGV +
Sbjct: 552 LKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCIC 611
Query: 462 LYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y ++ ++++E+++G+KF+ I P +I KA+ +A + V + I FK +AE
Sbjct: 612 FYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAE 671
Query: 521 ELLNNSG 527
+L+ G
Sbjct: 672 KLIEEKG 678
>gi|426364958|ref|XP_004049558.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Gorilla gorilla
gorilla]
Length = 715
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 211/448 (47%), Positives = 290/448 (64%), Gaps = 23/448 (5%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK +G+ LFPIQA TF V G D
Sbjct: 105 SEIEQEIPVEQKE-------GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKD 157
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L +G + K+ GRAP VLVL PTRELA QV +DF
Sbjct: 158 LIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRAPQVLVLAPTRELANQVSKDFS 213
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK VL
Sbjct: 214 DI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVL 270
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 271 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 330
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 331 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNS 390
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 391 AIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 450
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVE 499
E+YIHRSGRTGRAG TGV + Y ++ + ++E+++G+KF+ I P +I KA+ +
Sbjct: 451 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKD 510
Query: 500 AAETITQVSDSVIPAFKSAAEELLNNSG 527
A + V + I FK +AE+L+ G
Sbjct: 511 AIRLLDSVPPTAISHFKQSAEKLIEEKG 538
>gi|72384374|ref|NP_062426.2| nucleolar RNA helicase 2 [Mus musculus]
gi|341940509|sp|Q9JIK5.3|DDX21_MOUSE RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
protein 21; AltName: Full=Gu-alpha; AltName:
Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
RNA helicase II; AltName: Full=RH II/Gu
gi|74213643|dbj|BAE35625.1| unnamed protein product [Mus musculus]
gi|112180476|gb|AAH43655.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Mus musculus]
gi|148700139|gb|EDL32086.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_b [Mus
musculus]
Length = 851
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 204/427 (47%), Positives = 281/427 (65%), Gaps = 16/427 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E
Sbjct: 259 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIE 318
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L G + + GRAP VLVL PTRELA QV +DF D+ L+ C YGG PY
Sbjct: 319 KLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDFSDI---TKKLSVACFYGGTPYG 371
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF + VE IL
Sbjct: 372 GQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCV 431
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV +++ K++KS + +DL+G + KA+ V H+ + C
Sbjct: 432 AYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCH 491
Query: 346 SSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVT 401
+ R+ VI D+IR YS GRTIIF ETK+ A +L+ + A++LHGDI Q QRE+T
Sbjct: 492 WTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREIT 551
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG TGV +
Sbjct: 552 LKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCIC 611
Query: 462 LYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y ++ ++++E+++G+KF+ I P +I KA+ +A + V + I FK +AE
Sbjct: 612 FYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAE 671
Query: 521 ELLNNSG 527
+L+ G
Sbjct: 672 KLIEEKG 678
>gi|1230564|gb|AAB02546.1| Gu protein, partial [Homo sapiens]
Length = 801
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 211/448 (47%), Positives = 290/448 (64%), Gaps = 23/448 (5%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK +G+ LFPIQA TF V G D
Sbjct: 191 SEIEQEIPVEQKE-------GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKD 243
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L +G + K+ GRAP VLVL PTRELA QV +DF
Sbjct: 244 LIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRAPQVLVLAPTRELANQVSKDFS 299
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK VL
Sbjct: 300 DI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVL 356
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 357 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 416
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 417 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNS 476
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 477 AIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 536
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVE 499
E+YIHRSGRTGRAG TGV + Y ++ + ++E+++G+KF+ I P +I KA+ +
Sbjct: 537 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKD 596
Query: 500 AAETITQVSDSVIPAFKSAAEELLNNSG 527
A + V + I FK +AE+L+ G
Sbjct: 597 AIRLLDSVPPTAISHFKQSAEKLIEEKG 624
>gi|26368308|dbj|BAB26817.2| unnamed protein product [Mus musculus]
Length = 832
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 204/427 (47%), Positives = 281/427 (65%), Gaps = 16/427 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E
Sbjct: 240 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIE 299
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L G + + GRAP VLVL PTRELA QV +DF D+ L+ C YGG PY
Sbjct: 300 KLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDFSDI---TKKLSVACFYGGTPYG 352
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF + VE IL
Sbjct: 353 GQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCV 412
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV +++ K++KS + +DL+G + KA+ V H+ + C
Sbjct: 413 AYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCH 472
Query: 346 SSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVT 401
+ R+ VI D+IR YS GRTIIF ETK+ A +L+ + A++LHGDI Q QRE+T
Sbjct: 473 WTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREIT 532
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG TGV +
Sbjct: 533 LKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCIC 592
Query: 462 LYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y ++ ++++E+++G+KF+ I P +I KA+ +A + V + I FK +AE
Sbjct: 593 FYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAE 652
Query: 521 ELLNNSG 527
+L+ G
Sbjct: 653 KLIEEKG 659
>gi|7385089|gb|AAF61690.1|AF220365_1 nucleolar RNA helicase II/Gu [Mus musculus]
gi|148700138|gb|EDL32085.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_a [Mus
musculus]
Length = 805
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 204/427 (47%), Positives = 281/427 (65%), Gaps = 16/427 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E
Sbjct: 213 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIE 272
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L G + + GRAP VLVL PTRELA QV +DF D+ L+ C YGG PY
Sbjct: 273 KLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDFSDI---TKKLSVACFYGGTPYG 325
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF + VE IL
Sbjct: 326 GQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCV 385
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV +++ K++KS + +DL+G + KA+ V H+ + C
Sbjct: 386 AYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCH 445
Query: 346 SSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVT 401
+ R+ VI D+IR YS GRTIIF ETK+ A +L+ + A++LHGDI Q QRE+T
Sbjct: 446 WTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREIT 505
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG TGV +
Sbjct: 506 LKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCIC 565
Query: 462 LYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y ++ ++++E+++G+KF+ I P +I KA+ +A + V + I FK +AE
Sbjct: 566 FYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAE 625
Query: 521 ELLNNSG 527
+L+ G
Sbjct: 626 KLIEEKG 632
>gi|329663131|ref|NP_001192982.1| ATP-dependent RNA helicase DDX50 [Bos taurus]
gi|296472173|tpg|DAA14288.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Bos taurus]
gi|440895816|gb|ELR47910.1| ATP-dependent RNA helicase DDX50 [Bos grunniens mutus]
Length = 737
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 222/511 (43%), Positives = 309/511 (60%), Gaps = 35/511 (6%)
Query: 26 DFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKK 85
D EE L+++ S K ++K+ S +I+E E+RS+ S L + S+
Sbjct: 73 DTEEGCDRLSDEFSKSHKPRRKDLSN----GDIDEHEKRSKRVSSLNSSTHKSSDN---- 124
Query: 86 KKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLD 145
KVE E EQ+ G A S F IS + LK +G+ LFPIQ TF V +
Sbjct: 125 ----KVE-ETLTREQKEG------AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYE 173
Query: 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205
G DL+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +
Sbjct: 174 GKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAK 229
Query: 206 DF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264
DF DV L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+
Sbjct: 230 DFKDV---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRH 286
Query: 265 RVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
VLDE D+ML +GF E VE IL K + + QTLLFSAT P WV ++ K++KS +
Sbjct: 287 VVLDEVDQMLDLGFAEQVEDILHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 346
Query: 322 TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA 380
+DLVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 347 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMA 406
Query: 381 ---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP
Sbjct: 407 MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPP 466
Query: 438 RDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAA 496
+DVE+YIHRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+
Sbjct: 467 QDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 526
Query: 497 GVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
++A ++ VS + + F+ +A+ L+ G
Sbjct: 527 SMDAIRSLASVSYAAVDFFRPSAQRLIEEKG 557
>gi|149038677|gb|EDL92966.1| rCG22008, isoform CRA_c [Rattus norvegicus]
Length = 638
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 209/445 (46%), Positives = 288/445 (64%), Gaps = 23/445 (5%)
Query: 92 EPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVG 151
E E VE++E A S F IS + LK++G+ LFPIQA TF V G DL+
Sbjct: 28 EKEIPVEQKE-------GAFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIA 80
Query: 152 RARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVY 210
+ARTG GKT +F +P++E L G + + GRAP VLVL PTRELA QV +DF D+
Sbjct: 81 QARTGTGKTFSFAIPLIEKLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDFSDI- 135
Query: 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270
L+ C YGG PY Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE
Sbjct: 136 --TKKLSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEV 193
Query: 271 DEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVG 327
D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +DL+G
Sbjct: 194 DQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIG 253
Query: 328 NEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD---LL 383
+ KA+ V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+ +
Sbjct: 254 KKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIK 313
Query: 384 PGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAY 443
A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+Y
Sbjct: 314 QDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESY 373
Query: 444 IHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAE 502
IHRSGRTGRAG TGV + Y ++ ++++E+++G+KF+ I P +I KA+ +A
Sbjct: 374 IHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIR 433
Query: 503 TITQVSDSVIPAFKSAAEELLNNSG 527
+ V + I FK +AE+L+ G
Sbjct: 434 LLDSVPPTAIGHFKQSAEKLIEEKG 458
>gi|297686801|ref|XP_002820927.1| PREDICTED: nucleolar RNA helicase 2 [Pongo abelii]
Length = 783
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 210/448 (46%), Positives = 289/448 (64%), Gaps = 23/448 (5%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK +G+ LFPIQA TF V G D
Sbjct: 173 SEIEQEIPVEQKE-------GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKD 225
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L +G + K+ GR P VLVL PTRELA QV +DF
Sbjct: 226 LIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRPPQVLVLAPTRELANQVSKDFS 281
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK VL
Sbjct: 282 DI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVL 338
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 339 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 398
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 399 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNS 458
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 459 AIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 518
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVE 499
E+YIHRSGRTGRAG TGV + Y ++ + ++E+++G+KF+ I P +I KA+ +
Sbjct: 519 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKD 578
Query: 500 AAETITQVSDSVIPAFKSAAEELLNNSG 527
A + V + I FK +AE+L+ G
Sbjct: 579 AIRLLDSVPPTAISHFKQSAEKLIEEKG 606
>gi|11890755|gb|AAF78930.2|AAF78930 RNA helicase II/Gu protein [Homo sapiens]
Length = 715
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 210/448 (46%), Positives = 289/448 (64%), Gaps = 23/448 (5%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK +G+ LFPIQA TF V G D
Sbjct: 105 SEIEQEIPVEQKE-------GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKD 157
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L +G + K+ GRAP VLVL PTREL QV +DF
Sbjct: 158 LIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRAPQVLVLAPTRELCNQVSKDFS 213
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK VL
Sbjct: 214 DI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVL 270
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 271 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 330
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 331 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNS 390
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 391 AIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 450
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVE 499
E+YIHRSGRTGRAG TGV + Y ++ + ++E+++G+KF+ I P +I KA+ +
Sbjct: 451 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKD 510
Query: 500 AAETITQVSDSVIPAFKSAAEELLNNSG 527
A + V + I FK +AE+L+ G
Sbjct: 511 AIRLLDSVPPTAISHFKQSAEKLIEEKG 538
>gi|326429375|gb|EGD74945.1| DEAD box polypeptide 47 isoform 1 [Salpingoeca sp. ATCC 50818]
Length = 711
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 213/489 (43%), Positives = 306/489 (62%), Gaps = 16/489 (3%)
Query: 46 KKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQERGES 105
++ S+ + + + ++E E S + + + ++ KK K K + +E E +
Sbjct: 54 RRHSTDEGESAVSDQESEHSAINGAAHDDSDAENHPTKKAKSTVKDDDSDDQDE-EMSQV 112
Query: 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVL 165
+ A+ F IS R L+ G + LFPIQA TFD+++ G+D+ G+ARTG+GKTL+F L
Sbjct: 113 QKEGALDNFDISDKSRNNLEKHGYKYLFPIQAKTFDLIMAGNDIFGKARTGEGKTLSFAL 172
Query: 166 PILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA 225
P++E L AS T GR P VLV+ PTRELA QV +F G + L S C+YGG
Sbjct: 173 PVIEKLL-----ASPDTTRGRRPRVLVMAPTRELASQVWREFQKVGPS--LASTCIYGGT 225
Query: 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285
Y Q + G+DVV+GTPGR+ DH+E G + L++L++ VLDEAD ML +GFV+ VE +
Sbjct: 226 DYEPQRRAFRNGLDVVVGTPGRLMDHMESGALQLTNLQYLVLDEADRMLEVGFVDTVEKM 285
Query: 286 LG-KVEDA-NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343
L VE A K Q +LFSAT+P ++K TK++ + K +D VG E + ST V+H+ L
Sbjct: 286 LSMAVEQAGQKPQMILFSATMPPFIKSTLTKYM-PEHKVVDTVGKEMNRTSTGVQHLALR 344
Query: 344 CSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLA---DLLPGARALHGDIQQSQRE 399
C AR+ VI D+++ YS GRT+IFT+TK A++LA L + LHGDI Q QRE
Sbjct: 345 CPWQARNTVIADVVQVYSGAHGRTMIFTQTKRDANELALNDTLKQEVQVLHGDIAQKQRE 404
Query: 400 VTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 459
++L FR GK LVAT+VAARG+DI +V L++QCEPP+DVE+YIHRSGRTGRAG G
Sbjct: 405 LSLQCFRDGKVRCLVATDVAARGIDIPEVDLVVQCEPPKDVESYIHRSGRTGRAGRKGTC 464
Query: 460 VMLYDP-RKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSA 518
+ Y P ++ + ++ER +G+ F I APQPADI KA+ +A + V++ V+ F+ A
Sbjct: 465 ICFYKPNQEQQLREVERRAGISFTRIGAPQPADIIKASARDATRFLDSVTNDVLVYFQEA 524
Query: 519 AEELLNNSG 527
A+ + G
Sbjct: 525 AQAFIEEKG 533
>gi|344237686|gb|EGV93789.1| Nucleolar RNA helicase 2 [Cricetulus griseus]
Length = 729
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 206/427 (48%), Positives = 278/427 (65%), Gaps = 16/427 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E
Sbjct: 139 AFSNFPISQETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIE 198
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L G + GRAP VLVL PTRELA QV DF D+ L+ C YGG PY
Sbjct: 199 KLQGGLQDKKR----GRAPQVLVLAPTRELANQVSNDFSDI---TKKLSVACFYGGTPYG 251
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q ++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF + VE IL
Sbjct: 252 GQIDCIRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCV 311
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV +++ K++KS + +DL+G + KA+ V H+ + C
Sbjct: 312 AYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCH 371
Query: 346 SSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVT 401
S R+ VI D+IR YS GRTIIF ETK A +L+ + A++LHGDI Q QRE+T
Sbjct: 372 WSERAAVIGDVIRVYSGHQGRTIIFCETKREAQELSQNTCIKQDAQSLHGDIPQKQREIT 431
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG TGV +
Sbjct: 432 LKGFRNGSFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCIC 491
Query: 462 LYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y + + ++++E+++G+KF+ I P A+I KA+ +A + V + I FK +AE
Sbjct: 492 FYQHKDEYQLAQVEQKAGIKFKRIGVPSAAEIIKASSKDAIRLLDSVPPTAIDHFKQSAE 551
Query: 521 ELLNNSG 527
+L+ G
Sbjct: 552 KLIEEKG 558
>gi|354475482|ref|XP_003499957.1| PREDICTED: nucleolar RNA helicase 2-like [Cricetulus griseus]
Length = 806
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 206/427 (48%), Positives = 278/427 (65%), Gaps = 16/427 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E
Sbjct: 216 AFSNFPISQETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIE 275
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L G + GRAP VLVL PTRELA QV DF D+ L+ C YGG PY
Sbjct: 276 KLQGGLQDKKR----GRAPQVLVLAPTRELANQVSNDFSDI---TKKLSVACFYGGTPYG 328
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q ++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF + VE IL
Sbjct: 329 GQIDCIRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCV 388
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV +++ K++KS + +DL+G + KA+ V H+ + C
Sbjct: 389 AYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCH 448
Query: 346 SSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVT 401
S R+ VI D+IR YS GRTIIF ETK A +L+ + A++LHGDI Q QRE+T
Sbjct: 449 WSERAAVIGDVIRVYSGHQGRTIIFCETKREAQELSQNTCIKQDAQSLHGDIPQKQREIT 508
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG TGV +
Sbjct: 509 LKGFRNGSFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCIC 568
Query: 462 LYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y + + ++++E+++G+KF+ I P A+I KA+ +A + V + I FK +AE
Sbjct: 569 FYQHKDEYQLAQVEQKAGIKFKRIGVPSAAEIIKASSKDAIRLLDSVPPTAIDHFKQSAE 628
Query: 521 ELLNNSG 527
+L+ G
Sbjct: 629 KLIEEKG 635
>gi|402880638|ref|XP_003903905.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Papio anubis]
Length = 783
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 211/449 (46%), Positives = 287/449 (63%), Gaps = 16/449 (3%)
Query: 88 KAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGS 147
KA E G +QE + A S F IS + LK +G+ LFPIQA TF V G
Sbjct: 165 KAASEESNGDIDQEISVEQKEGAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGK 224
Query: 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207
DL+ +ARTG GKT +F +P++E L +G + K+ GR P VLVL PTRELA QV +DF
Sbjct: 225 DLIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRPPQVLVLAPTRELANQVSKDF 280
Query: 208 -DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK V
Sbjct: 281 SDI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQSGKLDLTKLKHVV 337
Query: 267 LDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTI 323
LDE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +
Sbjct: 338 LDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQV 397
Query: 324 DLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD- 381
DL+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 398 DLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQN 457
Query: 382 --LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRD 439
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+D
Sbjct: 458 SAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKD 517
Query: 440 VEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGV 498
VE+YIHRSGRTGRAG TGV + Y ++ + ++E+++G+KF+ I P +I KA+
Sbjct: 518 VESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSK 577
Query: 499 EAAETITQVSDSVIPAFKSAAEELLNNSG 527
+A + V + I FK +AE+L+ G
Sbjct: 578 DAIRLLDSVPPTAISHFKQSAEKLIEEKG 606
>gi|417515609|gb|JAA53623.1| DEAD (Asp-Glu-Ala-Asp) box helicase 21 [Sus scrofa]
Length = 784
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 210/448 (46%), Positives = 288/448 (64%), Gaps = 23/448 (5%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK++G+ LFPIQA TF V G D
Sbjct: 174 SELEQEISVEQKE-------GAFSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKD 226
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L G + K+ GRAP VLVL PTRELA QV DF
Sbjct: 227 LIAQARTGTGKTFSFAIPLIEKL-QGELQDRKR---GRAPQVLVLAPTRELASQVSRDFS 282
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L C YGG PY Q +++ GID+++GTPGRIKDH++ +DL+ LK VL
Sbjct: 283 DI---TKKLAVACFYGGTPYGGQIDRMRNGIDILVGTPGRIKDHLQNNKLDLTKLKHVVL 339
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 340 DEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVD 399
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESA---SQLA 380
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A SQ A
Sbjct: 400 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGYQGRTIIFCETKKEAQELSQNA 459
Query: 381 DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++Q PP+DV
Sbjct: 460 AVRQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSCPPKDV 519
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVE 499
E+YIHRSGRTGRAG TG+ + Y ++ ++ +E+++G+KF+ I P P +I KA+ +
Sbjct: 520 ESYIHRSGRTGRAGRTGICICFYQHKEEYQLTLVEQKAGIKFKRIGVPSPTEIIKASSKD 579
Query: 500 AAETITQVSDSVIPAFKSAAEELLNNSG 527
A + V + I FK +AE+L+ G
Sbjct: 580 AIRLLDSVPPTAIGHFKQSAEKLIEEKG 607
>gi|21410145|gb|AAH30895.1| Ddx21 protein, partial [Mus musculus]
Length = 689
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 204/427 (47%), Positives = 281/427 (65%), Gaps = 16/427 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E
Sbjct: 97 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIE 156
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L G + + GRAP VLVL PTRELA QV +DF D+ L+ C YGG PY
Sbjct: 157 KLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDFSDI---TKKLSVACFYGGTPYG 209
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF + VE IL
Sbjct: 210 GQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCV 269
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV +++ K++KS + +DL+G + KA+ V H+ + C
Sbjct: 270 AYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCH 329
Query: 346 SSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVT 401
+ R+ VI D+IR YS GRTIIF ETK+ A +L+ + A++LHGDI Q QRE+T
Sbjct: 330 WTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREIT 389
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG TGV +
Sbjct: 390 LKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCIC 449
Query: 462 LYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y ++ ++++E+++G+KF+ I P +I KA+ +A + V + I FK +AE
Sbjct: 450 FYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAE 509
Query: 521 ELLNNSG 527
+L+ G
Sbjct: 510 KLIEEKG 516
>gi|224052119|ref|XP_002191015.1| PREDICTED: nucleolar RNA helicase 2-like [Taeniopygia guttata]
Length = 589
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 202/426 (47%), Positives = 282/426 (66%), Gaps = 14/426 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F +S + L ++GI+ LFP+Q TF + DG D++ +ARTG GKT +F LP++E
Sbjct: 23 AFSNFPLSQNTVKLLTARGIKYLFPVQVKTFQPIYDGKDVIAQARTGTGKTFSFALPLIE 82
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
L + ++ GRAP VLVL+PTRELA QV +DF L+ C YGG+PY
Sbjct: 83 KLQS----VTQDGRRGRAPKVLVLVPTRELATQVAKDFKNL--TKKLSVACFYGGSPYKE 136
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG-- 287
Q LK GID+++GTPGRI+DHI+ ++LSS+K VLDE D ML MGF E VE ILG
Sbjct: 137 QLDLLKSGIDILVGTPGRIQDHIQNSKLELSSVKHVVLDEVDHMLDMGFAEQVEEILGSS 196
Query: 288 -KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346
K N QTLLFSAT P WV ++ K+++ + + IDL+G + + +T V H+ + C S
Sbjct: 197 YKRGSENNPQTLLFSATCPRWVYDVAKKYMRDEYEQIDLIGKKAQRTATTVEHLAIQCRS 256
Query: 347 SARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVTL 402
S R+ V+ DII+ YS S GRTI+F ETK+ A++LA L A++LHGDI Q QRE+TL
Sbjct: 257 SQRAGVLGDIIQVYSGSRGRTIVFCETKKEANELAMNASLKQDAQSLHGDIPQKQREITL 316
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
GFR+G F L+ATNVAARGLDI +V L+IQC PP+DV++YIHRSGRTGRAG TG+ + L
Sbjct: 317 KGFRNGVFEVLIATNVAARGLDIPEVDLVIQCSPPKDVDSYIHRSGRTGRAGRTGICICL 376
Query: 463 YDPRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEE 521
+ R+ + K +E ++G+ F+ + P D+ KA+ +A + + V + + F+ +AEE
Sbjct: 377 FQRREEDLLKQVEHKAGITFKRVGVPSATDVIKASSSDAKKLLEAVPPAAVDYFRKSAEE 436
Query: 522 LLNNSG 527
L++ G
Sbjct: 437 LIDEKG 442
>gi|426255666|ref|XP_004021469.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Ovis aries]
Length = 644
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 220/511 (43%), Positives = 309/511 (60%), Gaps = 35/511 (6%)
Query: 26 DFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKK 85
D EE L+++ S K ++K+ S +I+E E+RS+ S L + S+
Sbjct: 74 DTEEGCDRLSDEFSKSHKPRRKDLSN----GDIDEHEKRSKRVSSLNSSTHKSSDN---- 125
Query: 86 KKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLD 145
K+E E EQ+ G A S F IS + LK +G+ LFPIQ TF V +
Sbjct: 126 ----KLE-ETLTREQKEG------AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYE 174
Query: 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205
G DL+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +
Sbjct: 175 GKDLIAQARTGTGKTFSFAIPLIEKLQRNQETIKK----SRSPKVLVLAPTRELANQVAK 230
Query: 206 DF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264
DF D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+
Sbjct: 231 DFKDI---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRH 287
Query: 265 RVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
VLDE D+ML +GF E VE IL K + + QTLLFSAT P WV ++ K++KS +
Sbjct: 288 VVLDEVDQMLDLGFAEQVEDILHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 347
Query: 322 TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA 380
+DLVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 348 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMA 407
Query: 381 ---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP
Sbjct: 408 MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPP 467
Query: 438 RDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAA 496
+DVE+YIHRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+
Sbjct: 468 QDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 527
Query: 497 GVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
++A ++ VS + + F+ +A+ L+ G
Sbjct: 528 SMDAIRSLASVSYAAVDFFRPSAQRLIEEKG 558
>gi|431904163|gb|ELK09585.1| Nucleolar RNA helicase 2 [Pteropus alecto]
Length = 784
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 209/448 (46%), Positives = 290/448 (64%), Gaps = 23/448 (5%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK++G+ LFPIQA TF V G D
Sbjct: 174 SELEQEIPVEQKE-------GAFSNFPISEGTIKLLKARGVTFLFPIQAKTFHHVYSGKD 226
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L G + K+ GRAP VLVL PTRELA QV +DF
Sbjct: 227 LIAQARTGTGKTFSFAIPLIEKLL-GELQDRKR---GRAPQVLVLAPTRELANQVSKDFS 282
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L C YGG PY Q +++ GID+++GTPGRIKDH++ G +DL+ LK VL
Sbjct: 283 DI---TKKLAVACFYGGTPYGGQIERMRNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVL 339
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 340 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 399
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 400 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNV 459
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 460 SIKQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 519
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVE 499
E+YIHRSGRTGRAG TG+ + Y ++ ++++E+++G+KF+ I P +I KA+ +
Sbjct: 520 ESYIHRSGRTGRAGRTGICICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKD 579
Query: 500 AAETITQVSDSVIPAFKSAAEELLNNSG 527
A + V + I FK +AE+L+ G
Sbjct: 580 AIRLLDSVPPTAISHFKQSAEKLIEEKG 607
>gi|380817914|gb|AFE80831.1| nucleolar RNA helicase 2 [Macaca mulatta]
gi|383414353|gb|AFH30390.1| nucleolar RNA helicase 2 [Macaca mulatta]
gi|384943498|gb|AFI35354.1| nucleolar RNA helicase 2 [Macaca mulatta]
Length = 783
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 211/449 (46%), Positives = 287/449 (63%), Gaps = 16/449 (3%)
Query: 88 KAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGS 147
KA E G +QE + A S F IS + LK +G+ LFPIQA TF V G
Sbjct: 165 KAASEESNGDIDQEISVEQKEGAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGK 224
Query: 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207
DL+ +ARTG GKT +F +P++E L +G + K+ GR P VLVL PTRELA QV +DF
Sbjct: 225 DLIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRPPQVLVLAPTRELANQVSKDF 280
Query: 208 -DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK V
Sbjct: 281 SDI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQSGKLDLTKLKHVV 337
Query: 267 LDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTI 323
LDE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +
Sbjct: 338 LDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQV 397
Query: 324 DLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD- 381
DL+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 398 DLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQN 457
Query: 382 --LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRD 439
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+D
Sbjct: 458 SAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKD 517
Query: 440 VEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGV 498
VE+YIHRSGRTGRAG TGV + Y ++ + ++E+++G+KF+ I P +I KA+
Sbjct: 518 VESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSK 577
Query: 499 EAAETITQVSDSVIPAFKSAAEELLNNSG 527
+A + V + I FK +AE+L+ G
Sbjct: 578 DAIRLLDSVPPTAISHFKQSAEKLIEEKG 606
>gi|426255664|ref|XP_004021468.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Ovis aries]
Length = 738
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 220/511 (43%), Positives = 309/511 (60%), Gaps = 35/511 (6%)
Query: 26 DFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKK 85
D EE L+++ S K ++K+ S +I+E E+RS+ S L + S+
Sbjct: 74 DTEEGCDRLSDEFSKSHKPRRKDLSN----GDIDEHEKRSKRVSSLNSSTHKSSDN---- 125
Query: 86 KKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLD 145
K+E E EQ+ G A S F IS + LK +G+ LFPIQ TF V +
Sbjct: 126 ----KLE-ETLTREQKEG------AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYE 174
Query: 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205
G DL+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +
Sbjct: 175 GKDLIAQARTGTGKTFSFAIPLIEKLQRNQETIKK----SRSPKVLVLAPTRELANQVAK 230
Query: 206 DF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264
DF D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+
Sbjct: 231 DFKDI---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRH 287
Query: 265 RVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
VLDE D+ML +GF E VE IL K + + QTLLFSAT P WV ++ K++KS +
Sbjct: 288 VVLDEVDQMLDLGFAEQVEDILHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 347
Query: 322 TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA 380
+DLVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 348 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMA 407
Query: 381 ---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP
Sbjct: 408 MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPP 467
Query: 438 RDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAA 496
+DVE+YIHRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+
Sbjct: 468 QDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 527
Query: 497 GVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
++A ++ VS + + F+ +A+ L+ G
Sbjct: 528 SMDAIRSLASVSYAAVDFFRPSAQRLIEEKG 558
>gi|109089499|ref|XP_001110939.1| PREDICTED: nucleolar RNA helicase 2-like isoform 3 [Macaca mulatta]
Length = 783
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 211/449 (46%), Positives = 287/449 (63%), Gaps = 16/449 (3%)
Query: 88 KAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGS 147
KA E G +QE + A S F IS + LK +G+ LFPIQA TF V G
Sbjct: 165 KAASEESNGDIDQEISVEQKEGAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGK 224
Query: 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207
DL+ +ARTG GKT +F +P++E L +G + K+ GR P VLVL PTRELA QV +DF
Sbjct: 225 DLIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRPPQVLVLAPTRELANQVSKDF 280
Query: 208 -DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK V
Sbjct: 281 SDI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQSGKLDLTKLKHVV 337
Query: 267 LDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTI 323
LDE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +
Sbjct: 338 LDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQV 397
Query: 324 DLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD- 381
DL+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 398 DLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQN 457
Query: 382 --LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRD 439
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+D
Sbjct: 458 SAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKD 517
Query: 440 VEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGV 498
VE+YIHRSGRTGRAG TGV + Y ++ + ++E+++G+KF+ I P +I KA+
Sbjct: 518 VESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSK 577
Query: 499 EAAETITQVSDSVIPAFKSAAEELLNNSG 527
+A + V + I FK +AE+L+ G
Sbjct: 578 DAIRLLDSVPPTAISHFKQSAEKLIEEKG 606
>gi|350592792|ref|XP_001928807.4| PREDICTED: LOW QUALITY PROTEIN: nucleolar RNA helicase 2 [Sus
scrofa]
Length = 844
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 210/448 (46%), Positives = 288/448 (64%), Gaps = 23/448 (5%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK++G+ LFPIQA TF V G D
Sbjct: 234 SELEQEISVEQKE-------GAFSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKD 286
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L G + K+ GRAP VLVL PTRELA QV DF
Sbjct: 287 LIAQARTGTGKTFSFAIPLIEKL-QGELQDRKR---GRAPQVLVLAPTRELASQVSRDFS 342
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L C YGG PY Q +++ GID+++GTPGRIKDH++ +DL+ LK VL
Sbjct: 343 DI---TKKLAVACFYGGTPYGGQIDRMRNGIDILVGTPGRIKDHLQNNKLDLTKLKHVVL 399
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 400 DEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVD 459
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESA---SQLA 380
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A SQ A
Sbjct: 460 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGYQGRTIIFCETKKEAQELSQNA 519
Query: 381 DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++Q PP+DV
Sbjct: 520 AVRQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSCPPKDV 579
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVE 499
E+YIHRSGRTGRAG TG+ + Y ++ ++ +E+++G+KF+ I P P +I KA+ +
Sbjct: 580 ESYIHRSGRTGRAGRTGICICFYQHKEEYQLTLVEQKAGIKFKRIGVPSPTEIIKASSKD 639
Query: 500 AAETITQVSDSVIPAFKSAAEELLNNSG 527
A + V + I FK +AE+L+ G
Sbjct: 640 AIRLLDSVPPTAIGHFKQSAEKLIEEKG 667
>gi|402880640|ref|XP_003903906.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Papio anubis]
Length = 715
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 211/449 (46%), Positives = 287/449 (63%), Gaps = 16/449 (3%)
Query: 88 KAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGS 147
KA E G +QE + A S F IS + LK +G+ LFPIQA TF V G
Sbjct: 97 KAASEESNGDIDQEISVEQKEGAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGK 156
Query: 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207
DL+ +ARTG GKT +F +P++E L +G + K+ GR P VLVL PTRELA QV +DF
Sbjct: 157 DLIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRPPQVLVLAPTRELANQVSKDF 212
Query: 208 -DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK V
Sbjct: 213 SDI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQSGKLDLTKLKHVV 269
Query: 267 LDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTI 323
LDE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +
Sbjct: 270 LDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQV 329
Query: 324 DLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD- 381
DL+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 330 DLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQN 389
Query: 382 --LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRD 439
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+D
Sbjct: 390 SAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKD 449
Query: 440 VEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGV 498
VE+YIHRSGRTGRAG TGV + Y ++ + ++E+++G+KF+ I P +I KA+
Sbjct: 450 VESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSK 509
Query: 499 EAAETITQVSDSVIPAFKSAAEELLNNSG 527
+A + V + I FK +AE+L+ G
Sbjct: 510 DAIRLLDSVPPTAISHFKQSAEKLIEEKG 538
>gi|432106715|gb|ELK32367.1| Nucleolar RNA helicase 2 [Myotis davidii]
Length = 799
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 206/448 (45%), Positives = 287/448 (64%), Gaps = 23/448 (5%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK++G+ LFPIQA TF V G D
Sbjct: 190 SELEQEIPVEQKE-------GAFSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKD 242
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L + GRAP VLVL PTRELA QV DF
Sbjct: 243 LIAQARTGTGKTFSFAIPLIEKLLAELHDRKR----GRAPQVLVLTPTRELANQVSRDFS 298
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDH++ G ++L+ LK VL
Sbjct: 299 DI---TKKLSVACFYGGTPYGGQIERIRNGIDILVGTPGRIKDHLQNGKLELTKLKHVVL 355
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++K + +D
Sbjct: 356 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVYNVAKKYMKPTYEQVD 415
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLAD-- 381
L+G KA+ V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 416 LIGKRTQKAAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNT 475
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F +VATNVAARGLDI +V L+IQC PP+DV
Sbjct: 476 SMKQDAQSLHGDIPQKQREITLKGFRNGDFGVMVATNVAARGLDIPEVDLVIQCSPPKDV 535
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVE 499
E+YIHRSGRTGRAG TG+ + Y ++ ++++E+++G+KF+ I P +I KA+ +
Sbjct: 536 ESYIHRSGRTGRAGRTGICICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKD 595
Query: 500 AAETITQVSDSVIPAFKSAAEELLNNSG 527
A + V + I FK +AE+L+ G
Sbjct: 596 AIRFLDSVPPTAINHFKQSAEKLIEEKG 623
>gi|384475931|ref|NP_001245111.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
gi|296220521|ref|XP_002756344.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Callithrix
jacchus]
gi|380816428|gb|AFE80088.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
gi|383421495|gb|AFH33961.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
gi|384949360|gb|AFI38285.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
Length = 737
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 226/564 (40%), Positives = 316/564 (56%), Gaps = 61/564 (10%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSET--SSELGEPV 75
M K+ D E EA L E S KK+ +K + K R + +E+ E E + +L P
Sbjct: 1 MPGKLLWGDIMELEAPLEESESQKKERQKSDRRKSRHHYDSDEKSETRENGVTDDLDAPK 60
Query: 76 -------------------NLKSEKEKKKKKKAKVEPEAGVEEQER--------GESEHP 108
L E K K + K P ++E E+ S H
Sbjct: 61 AKKTKMKEKLNGDTEEGFNRLSDEFSKSHKSRRKDLPNGDIDEYEKKSKRVSSLDSSTHK 120
Query: 109 N----------------AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
+ A S F IS + LK +G+ LFPIQ TF V +G DL+ +
Sbjct: 121 SSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQ 180
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYG 211
ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF D+
Sbjct: 181 ARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI-- 234
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D
Sbjct: 235 -TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVD 293
Query: 272 EMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG
Sbjct: 294 QMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGK 353
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLP 384
KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A +
Sbjct: 354 MTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQ 413
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444
A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YI
Sbjct: 414 NAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYI 473
Query: 445 HRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAET 503
HRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+ ++A +
Sbjct: 474 HRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRS 533
Query: 504 ITQVSDSVIPAFKSAAEELLNNSG 527
+ VS + + F+ +A+ L+ G
Sbjct: 534 LASVSYAAVDFFRPSAQRLIEEKG 557
>gi|440791138|gb|ELR12392.1| DEAD/DEAH box helicase domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 723
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/423 (46%), Positives = 276/423 (65%), Gaps = 10/423 (2%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S FRIS + L+ +G + LF IQA T+D + DG D++GRARTG GKTL+FVLP++E +
Sbjct: 119 SDFRISPTTVKLLQDRGFKCLFAIQAQTYDHIYDGKDIIGRARTGSGKTLSFVLPVVEKI 178
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
+ T YGR P V+ L PTRELA+Q+ ++FD+ A L + C+YGGAPY QE
Sbjct: 179 FIDMAGKPRST-YGRPPKVVCLSPTRELARQIAKEFDLV--APSLKAVCVYGGAPYTPQE 235
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
LK+G+D+VIGTPGR+ D ++R + L+ +K+ +LDEADEML +GF + V+ IL
Sbjct: 236 NALKRGVDIVIGTPGRVIDMLDRNCLKLTDVKYVILDEADEMLNIGFADAVDKILASAPK 295
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLK-SDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
++ QTLLFSAT+P WV+ I+ K ++ S+ T+DLVGN K+KA+ VRH+ + C R
Sbjct: 296 PDERQTLLFSATIPPWVQGIAQKHMRPSNLITVDLVGNSKLKAALTVRHLAICCPPPVRI 355
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVTLAGFRS 407
+ D+++ Y+ GRTI+F TK ++LA + + LHGDI Q QRE+TL GFR
Sbjct: 356 STMADVVKVYAGTGRTIVFANTKAEVNELAMKSSISNVCQVLHGDIAQKQREITLQGFRE 415
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY---D 464
G+F LVAT+VAARGLDI+DV L+IQ + P+D E YIHRSGRTGRAG +G+ V + D
Sbjct: 416 GRFSCLVATDVAARGLDIDDVDLVIQTQAPKDKETYIHRSGRTGRAGKSGICVTFFTRRD 475
Query: 465 PRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLN 524
R ++ +E G KFE I PQ D+ + A E + V D +I AF +AE+L+
Sbjct: 476 VRDGNLKWLESAVGAKFELIGTPQQPDLIRVATDAVEEKLEHVHDEMIKAFLPSAEKLIQ 535
Query: 525 NSG 527
G
Sbjct: 536 EKG 538
>gi|332218196|ref|XP_003258245.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Nomascus
leucogenys]
Length = 737
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 226/564 (40%), Positives = 316/564 (56%), Gaps = 61/564 (10%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSET--SSELGEPV 75
M K+ D E EA L E S KK+ +K + K R + +E+ E E + +L P
Sbjct: 1 MPGKLLWGDIMELEAPLEESESQKKERQKSDRRKSRHHYDSDEKSETRENGVTDDLDAPK 60
Query: 76 -------------------NLKSEKEKKKKKKAKVEPEAGVEEQER--------GESEHP 108
L E K K + K P ++E E+ S H
Sbjct: 61 AKKTKMKEKLNGDTEEGFNRLSDEFSKSHKSRRKDLPNGDIDEYEKKSKRVSSLDTSTHK 120
Query: 109 N----------------AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
+ A S F IS + LK +G+ LFPIQ TF V +G DL+ +
Sbjct: 121 SSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQ 180
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYG 211
ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF D+
Sbjct: 181 ARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI-- 234
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D
Sbjct: 235 -TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVD 293
Query: 272 EMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG
Sbjct: 294 QMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGK 353
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLP 384
KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A +
Sbjct: 354 MTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQ 413
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444
A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YI
Sbjct: 414 NAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYI 473
Query: 445 HRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAET 503
HRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+ ++A +
Sbjct: 474 HRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRS 533
Query: 504 ITQVSDSVIPAFKSAAEELLNNSG 527
+ VS + + F+ +A+ L+ G
Sbjct: 534 LASVSYAAVDFFRPSAQRLIEEKG 557
>gi|13129006|ref|NP_076950.1| ATP-dependent RNA helicase DDX50 [Homo sapiens]
gi|297686803|ref|XP_002820928.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Pongo
abelii]
gi|55976580|sp|Q9BQ39.1|DDX50_HUMAN RecName: Full=ATP-dependent RNA helicase DDX50; AltName: Full=DEAD
box protein 50; AltName: Full=Gu-beta; AltName:
Full=Nucleolar protein Gu2
gi|13540304|gb|AAK29402.1|AF334103_1 nucleolar protein GU2 [Homo sapiens]
gi|12653021|gb|AAH00272.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens]
gi|119574689|gb|EAW54304.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens]
gi|123983644|gb|ABM83473.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [synthetic construct]
gi|123998165|gb|ABM86684.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [synthetic construct]
Length = 737
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 226/564 (40%), Positives = 316/564 (56%), Gaps = 61/564 (10%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSET--SSELGEPV 75
M K+ D E EA L E S KK+ +K + K R + +E+ E E + +L P
Sbjct: 1 MPGKLLWGDIMELEAPLEESESQKKERQKSDRRKSRHHYDSDEKSETRENGVTDDLDAPK 60
Query: 76 -------------------NLKSEKEKKKKKKAKVEPEAGVEEQER--------GESEHP 108
L E K K + K P ++E E+ S H
Sbjct: 61 AKKSKMKEKLNGDTEEGFNRLSDEFSKSHKSRRKDLPNGDIDEYEKKSKRVSSLDTSTHK 120
Query: 109 N----------------AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
+ A S F IS + LK +G+ LFPIQ TF V +G DL+ +
Sbjct: 121 SSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQ 180
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYG 211
ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF D+
Sbjct: 181 ARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI-- 234
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D
Sbjct: 235 -TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVD 293
Query: 272 EMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG
Sbjct: 294 QMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGK 353
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLP 384
KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A +
Sbjct: 354 MTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQ 413
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444
A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YI
Sbjct: 414 NAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYI 473
Query: 445 HRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAET 503
HRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+ ++A +
Sbjct: 474 HRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRS 533
Query: 504 ITQVSDSVIPAFKSAAEELLNNSG 527
+ VS + + F+ +A+ L+ G
Sbjct: 534 LASVSYAAVDFFRPSAQRLIEEKG 557
>gi|296220525|ref|XP_002756346.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 3 [Callithrix
jacchus]
Length = 643
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 226/564 (40%), Positives = 316/564 (56%), Gaps = 61/564 (10%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSET--SSELGEPV 75
M K+ D E EA L E S KK+ +K + K R + +E+ E E + +L P
Sbjct: 1 MPGKLLWGDIMELEAPLEESESQKKERQKSDRRKSRHHYDSDEKSETRENGVTDDLDAPK 60
Query: 76 -------------------NLKSEKEKKKKKKAKVEPEAGVEEQER--------GESEHP 108
L E K K + K P ++E E+ S H
Sbjct: 61 AKKTKMKEKLNGDTEEGFNRLSDEFSKSHKSRRKDLPNGDIDEYEKKSKRVSSLDSSTHK 120
Query: 109 N----------------AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
+ A S F IS + LK +G+ LFPIQ TF V +G DL+ +
Sbjct: 121 SSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQ 180
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYG 211
ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF D+
Sbjct: 181 ARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI-- 234
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D
Sbjct: 235 -TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVD 293
Query: 272 EMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG
Sbjct: 294 QMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGK 353
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLP 384
KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A +
Sbjct: 354 MTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQ 413
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444
A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YI
Sbjct: 414 NAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYI 473
Query: 445 HRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAET 503
HRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+ ++A +
Sbjct: 474 HRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRS 533
Query: 504 ITQVSDSVIPAFKSAAEELLNNSG 527
+ VS + + F+ +A+ L+ G
Sbjct: 534 LASVSYAAVDFFRPSAQRLIEEKG 557
>gi|114630813|ref|XP_507824.2| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Pan
troglodytes]
gi|397489926|ref|XP_003815962.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Pan
paniscus]
gi|410227544|gb|JAA10991.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
gi|410259742|gb|JAA17837.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
gi|410288618|gb|JAA22909.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
Length = 737
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 226/564 (40%), Positives = 316/564 (56%), Gaps = 61/564 (10%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSET--SSELGEPV 75
M K+ D E EA L E S KK+ +K + K R + +E+ E E + +L P
Sbjct: 1 MPGKLLWGDIMELEAPLEESESQKKERQKSDRRKSRHHYDSDEKSETRENGITDDLDAPK 60
Query: 76 -------------------NLKSEKEKKKKKKAKVEPEAGVEEQER--------GESEHP 108
L E K K + K P ++E E+ S H
Sbjct: 61 AKKSKMKEKLNGDTEEGFNRLSDEFSKSHKSRRKDLPNGDIDEYEKKSKRVSSLDTSTHK 120
Query: 109 N----------------AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
+ A S F IS + LK +G+ LFPIQ TF V +G DL+ +
Sbjct: 121 SSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQ 180
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYG 211
ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF D+
Sbjct: 181 ARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI-- 234
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D
Sbjct: 235 -TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVD 293
Query: 272 EMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG
Sbjct: 294 QMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGK 353
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLP 384
KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A +
Sbjct: 354 MTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQ 413
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444
A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YI
Sbjct: 414 NAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYI 473
Query: 445 HRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAET 503
HRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+ ++A +
Sbjct: 474 HRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRS 533
Query: 504 ITQVSDSVIPAFKSAAEELLNNSG 527
+ VS + + F+ +A+ L+ G
Sbjct: 534 LASVSYAAVDFFRPSAQRLIEEKG 557
>gi|344275097|ref|XP_003409350.1| PREDICTED: nucleolar RNA helicase 2 [Loxodonta africana]
Length = 787
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 209/448 (46%), Positives = 288/448 (64%), Gaps = 23/448 (5%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK++G+ LFPIQA TF V G D
Sbjct: 175 SELEQEIPVEQKE-------GAFSNFPISEATVKLLKARGVNFLFPIQAKTFHHVYSGKD 227
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L +G + K+ GR P VLVL PTRELA QV DF
Sbjct: 228 LIAQARTGTGKTFSFAIPLIEKL-HGELQDKKR---GRPPQVLVLAPTRELASQVSRDFS 283
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L C YGG PY Q +++ GID+++GTPGRIKDH++ +DL+ LK VL
Sbjct: 284 DI---TKKLAVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHLQNAKLDLTKLKHVVL 340
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 341 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 400
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESA---SQLA 380
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A SQ A
Sbjct: 401 LIGKKTQKTAITVEHLAIKCHWTHRATVIGDVIRVYSGYHGRTIIFCETKKEAQELSQNA 460
Query: 381 DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++Q PP+DV
Sbjct: 461 SIKQDAQSLHGDIPQKQREITLKGFRNGAFGVLVATNVAARGLDIPEVDLVVQSSPPKDV 520
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVE 499
E+YIHRSGRTGRAG TGV + Y ++ ++++E+++G+KF+ I P +I KA+ +
Sbjct: 521 ESYIHRSGRTGRAGRTGVCICFYQYKEEYQLAQVEQKAGIKFKRIGVPSATEIVKASSKD 580
Query: 500 AAETITQVSDSVIPAFKSAAEELLNNSG 527
A + V + I FK +AE+L+ G
Sbjct: 581 AIRYLDSVPPTAISYFKQSAEKLIEEKG 608
>gi|410349717|gb|JAA41462.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
Length = 737
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 226/564 (40%), Positives = 316/564 (56%), Gaps = 61/564 (10%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSET--SSELGEPV 75
M K+ D E EA L E S KK+ +K + K R + +E+ E E + +L P
Sbjct: 1 MPGKLLWGDIMELEAPLEESESQKKERQKSDRRKSRHHYDSDEKSETRENGITDDLDAPK 60
Query: 76 -------------------NLKSEKEKKKKKKAKVEPEAGVEEQER--------GESEHP 108
L E K K + K P ++E E+ S H
Sbjct: 61 AKKSKMKEKLNGDTEEGFNRLSDEFSKSHKSRRKDLPNGDIDEYEKKSKRVSSLDTSTHK 120
Query: 109 N----------------AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
+ A S F IS + LK +G+ LFPIQ TF V +G DL+ +
Sbjct: 121 SSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQ 180
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYG 211
ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF D+
Sbjct: 181 ARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI-- 234
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D
Sbjct: 235 -TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVD 293
Query: 272 EMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG
Sbjct: 294 QMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGK 353
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLP 384
KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A +
Sbjct: 354 MTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQ 413
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444
A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YI
Sbjct: 414 NAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYI 473
Query: 445 HRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAET 503
HRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+ ++A +
Sbjct: 474 HRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRS 533
Query: 504 ITQVSDSVIPAFKSAAEELLNNSG 527
+ VS + + F+ +A+ L+ G
Sbjct: 534 LASVSYAAVDFFRPSAQRLIEEKG 557
>gi|334349455|ref|XP_001380649.2| PREDICTED: nucleolar RNA helicase 2-like [Monodelphis domestica]
Length = 887
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 201/427 (47%), Positives = 282/427 (66%), Gaps = 16/427 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E
Sbjct: 340 AFSNFPISEETIQLLKARGVTYLFPIQAKTFHHVSSGKDLIAQARTGTGKTFSFAIPLVE 399
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L S+ GRAP +LVL PTREL+ QV +DF D+ LT C YGG PY+
Sbjct: 400 KLQGD----SQPRPRGRAPKILVLAPTRELSIQVSKDFSDI---TKKLTVACFYGGTPYN 452
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q +++GID+++GTPGRIKDH++ G +DL+ ++ VLDE D+ML MGF E VE IL
Sbjct: 453 GQIDLIRRGIDILVGTPGRIKDHLQNGRLDLTKVQHVVLDEVDQMLDMGFAEQVEEILTV 512
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV ++ K++KS + +DL+G + KA+ V H+ + C
Sbjct: 513 AYKKDSEDNPQTLLFSATCPHWVYDVAKKYMKSTYEQVDLIGKKTQKAAVTVEHLAINCH 572
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVT 401
S R+ VI D+I+ YS S GRTIIF ETK+ A +L+ + A++LHGDI Q QRE+T
Sbjct: 573 WSQRAAVIGDVIQVYSGSHGRTIIFCETKKEAQELSLNESIKQDAQSLHGDIPQKQREIT 632
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR+GKF LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG TG+ +
Sbjct: 633 LQGFRNGKFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICIC 692
Query: 462 LYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y + + ++++ER++G+ F+ + P ++I KA+ +A + V + I F+ A+
Sbjct: 693 FYQKKEQHQLAQVERQAGITFKRVGVPSASEIIKASSKDAIRFLDSVPPAAINNFRQTAQ 752
Query: 521 ELLNNSG 527
+L++ G
Sbjct: 753 KLIDEKG 759
>gi|332834199|ref|XP_003312636.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Pan
troglodytes]
gi|397489928|ref|XP_003815963.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Pan
paniscus]
Length = 643
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 226/564 (40%), Positives = 316/564 (56%), Gaps = 61/564 (10%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSET--SSELGEPV 75
M K+ D E EA L E S KK+ +K + K R + +E+ E E + +L P
Sbjct: 1 MPGKLLWGDIMELEAPLEESESQKKERQKSDRRKSRHHYDSDEKSETRENGITDDLDAPK 60
Query: 76 -------------------NLKSEKEKKKKKKAKVEPEAGVEEQER--------GESEHP 108
L E K K + K P ++E E+ S H
Sbjct: 61 AKKSKMKEKLNGDTEEGFNRLSDEFSKSHKSRRKDLPNGDIDEYEKKSKRVSSLDTSTHK 120
Query: 109 N----------------AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
+ A S F IS + LK +G+ LFPIQ TF V +G DL+ +
Sbjct: 121 SSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQ 180
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYG 211
ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF D+
Sbjct: 181 ARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI-- 234
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D
Sbjct: 235 -TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVD 293
Query: 272 EMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG
Sbjct: 294 QMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGK 353
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLP 384
KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A +
Sbjct: 354 MTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQ 413
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444
A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YI
Sbjct: 414 NAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYI 473
Query: 445 HRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAET 503
HRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+ ++A +
Sbjct: 474 HRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRS 533
Query: 504 ITQVSDSVIPAFKSAAEELLNNSG 527
+ VS + + F+ +A+ L+ G
Sbjct: 534 LASVSYAAVDFFRPSAQRLIEEKG 557
>gi|332218198|ref|XP_003258246.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Nomascus
leucogenys]
Length = 643
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 226/564 (40%), Positives = 316/564 (56%), Gaps = 61/564 (10%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSET--SSELGEPV 75
M K+ D E EA L E S KK+ +K + K R + +E+ E E + +L P
Sbjct: 1 MPGKLLWGDIMELEAPLEESESQKKERQKSDRRKSRHHYDSDEKSETRENGVTDDLDAPK 60
Query: 76 -------------------NLKSEKEKKKKKKAKVEPEAGVEEQER--------GESEHP 108
L E K K + K P ++E E+ S H
Sbjct: 61 AKKTKMKEKLNGDTEEGFNRLSDEFSKSHKSRRKDLPNGDIDEYEKKSKRVSSLDTSTHK 120
Query: 109 N----------------AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
+ A S F IS + LK +G+ LFPIQ TF V +G DL+ +
Sbjct: 121 SSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQ 180
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYG 211
ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF D+
Sbjct: 181 ARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI-- 234
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D
Sbjct: 235 -TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVD 293
Query: 272 EMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG
Sbjct: 294 QMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGK 353
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLP 384
KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A +
Sbjct: 354 MTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQ 413
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444
A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YI
Sbjct: 414 NAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYI 473
Query: 445 HRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAET 503
HRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+ ++A +
Sbjct: 474 HRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRS 533
Query: 504 ITQVSDSVIPAFKSAAEELLNNSG 527
+ VS + + F+ +A+ L+ G
Sbjct: 534 LASVSYAAVDFFRPSAQRLIEEKG 557
>gi|395741709|ref|XP_003777630.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Pongo
abelii]
gi|194374303|dbj|BAG57047.1| unnamed protein product [Homo sapiens]
Length = 643
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 226/564 (40%), Positives = 316/564 (56%), Gaps = 61/564 (10%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSET--SSELGEPV 75
M K+ D E EA L E S KK+ +K + K R + +E+ E E + +L P
Sbjct: 1 MPGKLLWGDIMELEAPLEESESQKKERQKSDRRKSRHHYDSDEKSETRENGVTDDLDAPK 60
Query: 76 -------------------NLKSEKEKKKKKKAKVEPEAGVEEQER--------GESEHP 108
L E K K + K P ++E E+ S H
Sbjct: 61 AKKSKMKEKLNGDTEEGFNRLSDEFSKSHKSRRKDLPNGDIDEYEKKSKRVSSLDTSTHK 120
Query: 109 N----------------AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
+ A S F IS + LK +G+ LFPIQ TF V +G DL+ +
Sbjct: 121 SSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQ 180
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYG 211
ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF D+
Sbjct: 181 ARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI-- 234
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D
Sbjct: 235 -TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVD 293
Query: 272 EMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG
Sbjct: 294 QMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGK 353
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLP 384
KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A +
Sbjct: 354 MTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQ 413
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444
A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YI
Sbjct: 414 NAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYI 473
Query: 445 HRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAET 503
HRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+ ++A +
Sbjct: 474 HRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRS 533
Query: 504 ITQVSDSVIPAFKSAAEELLNNSG 527
+ VS + + F+ +A+ L+ G
Sbjct: 534 LASVSYAAVDFFRPSAQRLIEEKG 557
>gi|344237687|gb|EGV93790.1| ATP-dependent RNA helicase DDX50 [Cricetulus griseus]
Length = 670
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 222/520 (42%), Positives = 313/520 (60%), Gaps = 37/520 (7%)
Query: 17 KMNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVN 76
KM +K+ D EE + L+++ S KS++K+ +++ E RS+ S L
Sbjct: 55 KMREKLN-GDTEEGLSRLSDEFSPSHKSRRKDVPN----GDVDTYERRSKRVSSL----- 104
Query: 77 LKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQ 136
+ K KVE E EQ+ G A S F IS + LK +G+ LFPIQ
Sbjct: 105 ----ENSTYKSSDKVE-ETLTREQKEG------AFSNFSISEETIKLLKGRGVTYLFPIQ 153
Query: 137 AMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT 196
TF V +G DL+ +ARTG GKT +F +P++E L K R+P VLVL PT
Sbjct: 154 VKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETVKK----SRSPKVLVLAPT 209
Query: 197 RELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG 255
RELA QV +DF D+ L+ C YGG Y +Q +++ GID+++GTPGRIKDH++ G
Sbjct: 210 RELANQVAKDFKDI---TRKLSVACFYGGTSYQSQINQIRNGIDILVGTPGRIKDHLQSG 266
Query: 256 NIDLSSLKFRVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHIS 312
+DLS L+ VLDE D+ML +GF E VE I+ K + + QTLLFSAT P WV ++
Sbjct: 267 RLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVA 326
Query: 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTE 371
K++KS + +DLVG KA+T V H+ + C S R VI D+++ YS S GR IIF E
Sbjct: 327 KKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCE 386
Query: 372 TKESASQLA---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV 428
TK++ +++A + A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V
Sbjct: 387 TKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEV 446
Query: 429 QLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487
L+IQ PP+DVE+YIHRSGRTGRAG TG+ V Y PR + + +E+++G+ F+ + P
Sbjct: 447 DLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVP 506
Query: 488 QPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
D+ K+ ++A ++ VS + + F+ +A+ L+ G
Sbjct: 507 STMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKG 546
>gi|326923426|ref|XP_003207937.1| PREDICTED: nucleolar RNA helicase 2-like [Meleagris gallopavo]
Length = 602
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 206/436 (47%), Positives = 279/436 (63%), Gaps = 14/436 (3%)
Query: 100 QERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGK 159
+E E A S F +S LK++ ++ LFP+Q TF + DG DL+ +ARTG GK
Sbjct: 28 EELTEEAREGAFSNFPLSQNTINLLKARDVKYLFPVQVKTFQPIYDGKDLIAQARTGTGK 87
Query: 160 TLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC 219
T +F +P+ E L + S+ GR+P VLVL+PTRELA QV DF L+
Sbjct: 88 TFSFAIPLTEKLQS----VSQDERRGRSPKVLVLVPTRELAIQVARDFKNL--TRKLSVA 141
Query: 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV 279
C YGGAPY AQ LK GID+++GTPGRIKDHI+ +DLS++K VLDE D ML MGF
Sbjct: 142 CFYGGAPYKAQFDLLKSGIDILVGTPGRIKDHIQNSKLDLSNVKHVVLDEVDHMLDMGFA 201
Query: 280 EDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN 336
E VE ILG K N QTLLFSAT P WV ++ K++K + + +DL+G + + +T
Sbjct: 202 EQVEEILGFAYKKGSENNPQTLLFSATCPRWVYDVAKKYMKDEYEQVDLIGKKTQRTATT 261
Query: 337 VRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGD 392
V H+ + C SS R +V+ DII+ YS S GRTI+F ETK+ A++LA L A++LHGD
Sbjct: 262 VEHLAIQCRSSQRVEVLGDIIQVYSGSHGRTIVFCETKKEANELALNSALKQEAQSLHGD 321
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
I Q QRE+TL GFR+G F L+ATNVAARGLDI +V L+IQC PP+DV++YIHRSGRTGR
Sbjct: 322 IPQKQREITLKGFRNGVFEVLIATNVAARGLDIPEVDLVIQCSPPKDVDSYIHRSGRTGR 381
Query: 453 AGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSV 511
AG G+ + Y ++ + K +E+++G+ F I P +I KA+ +A + + V S
Sbjct: 382 AGRAGICICFYQRKEEDLLKQVEQKAGITFRRIGVPSATEIIKASSDDAKKCLDAVPPSA 441
Query: 512 IPAFKSAAEELLNNSG 527
I F+ +A EL+ G
Sbjct: 442 IDYFRQSARELIEEKG 457
>gi|348575872|ref|XP_003473712.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Cavia porcellus]
Length = 735
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 219/511 (42%), Positives = 310/511 (60%), Gaps = 36/511 (7%)
Query: 26 DFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKK 85
D EE + L+++ S KS++K+ S +I+E E++S+ S L + K
Sbjct: 73 DTEEGFSRLSDEFSTSHKSRRKDLSN----GDIDECEKKSKRVSSL---------ENSHK 119
Query: 86 KKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLD 145
K+E E EQ+ G A S F IS + LK +G+ LFPIQ TF V +
Sbjct: 120 SSDNKLE-ETLTREQKEG------AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYE 172
Query: 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205
G DL+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +
Sbjct: 173 GKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAK 228
Query: 206 DF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264
DF D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+
Sbjct: 229 DFKDI---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRH 285
Query: 265 RVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
VLDE D+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS +
Sbjct: 286 VVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 345
Query: 322 TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA 380
+DLVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 346 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMA 405
Query: 381 ---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP
Sbjct: 406 MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPP 465
Query: 438 RDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAA 496
+DVE+YIHRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+
Sbjct: 466 QDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 525
Query: 497 GVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
++A ++ VS + + F+ +A+ L+ G
Sbjct: 526 SMDAIRSLASVSYAAVDFFRPSAQRLIEEKG 556
>gi|301755882|ref|XP_002913779.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Ailuropoda
melanoleuca]
Length = 739
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 218/509 (42%), Positives = 309/509 (60%), Gaps = 35/509 (6%)
Query: 28 EETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKKKK 87
EE L+++ S KS++K+ S +I+E E++S+ S L + S+
Sbjct: 77 EECNNRLSDEFSKSHKSRRKDLSN----GDIDEYEKKSKRVSSLDSSTHKSSDN------ 126
Query: 88 KAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGS 147
K+E E EQ+ G A S F IS + LK +G+ LFPIQ TF V +G
Sbjct: 127 --KLE-ETLTREQKEG------AFSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGK 177
Query: 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207
DL+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF
Sbjct: 178 DLIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDF 233
Query: 208 -DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266
D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ V
Sbjct: 234 KDI---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVV 290
Query: 267 LDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTI 323
LDE D+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +
Sbjct: 291 LDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPPWVYKVAKKYMKSRYEQV 350
Query: 324 DLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA-- 380
DLVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 351 DLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMN 410
Query: 381 -DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRD 439
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+D
Sbjct: 411 PHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQD 470
Query: 440 VEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGV 498
VE+YIHRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+ +
Sbjct: 471 VESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSM 530
Query: 499 EAAETITQVSDSVIPAFKSAAEELLNNSG 527
+A ++ VS + + F+ +A+ L+ G
Sbjct: 531 DAIRSLASVSYAAVDFFRPSAQRLIEEKG 559
>gi|281346962|gb|EFB22546.1| hypothetical protein PANDA_001615 [Ailuropoda melanoleuca]
Length = 710
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 218/509 (42%), Positives = 309/509 (60%), Gaps = 35/509 (6%)
Query: 28 EETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKKKK 87
EE L+++ S KS++K+ S +I+E E++S+ S L + S+
Sbjct: 48 EECNNRLSDEFSKSHKSRRKDLSN----GDIDEYEKKSKRVSSLDSSTHKSSDN------ 97
Query: 88 KAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGS 147
K+E E EQ+ G A S F IS + LK +G+ LFPIQ TF V +G
Sbjct: 98 --KLE-ETLTREQKEG------AFSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGK 148
Query: 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207
DL+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF
Sbjct: 149 DLIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDF 204
Query: 208 -DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266
D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ V
Sbjct: 205 KDI---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVV 261
Query: 267 LDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTI 323
LDE D+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +
Sbjct: 262 LDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPPWVYKVAKKYMKSRYEQV 321
Query: 324 DLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA-- 380
DLVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 322 DLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMN 381
Query: 381 -DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRD 439
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+D
Sbjct: 382 PHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQD 441
Query: 440 VEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGV 498
VE+YIHRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+ +
Sbjct: 442 VESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSM 501
Query: 499 EAAETITQVSDSVIPAFKSAAEELLNNSG 527
+A ++ VS + + F+ +A+ L+ G
Sbjct: 502 DAIRSLASVSYAAVDFFRPSAQRLIEEKG 530
>gi|410975241|ref|XP_003994042.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Felis catus]
Length = 739
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 216/508 (42%), Positives = 305/508 (60%), Gaps = 31/508 (6%)
Query: 29 ETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKKKKK 88
+TE + SD+ K K +I+E E++S+ S L + S+
Sbjct: 74 DTEEGCNNRLSDEFSKSHKSRRKDLSNGDIDEYEKKSKRVSSLDSSTHKSSDN------- 126
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
K+E E+ EQ+ G A S F IS + LK +G+ LFPIQ TF V +G D
Sbjct: 127 -KLE-ESLTREQKEG------AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKD 178
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF
Sbjct: 179 LIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFK 234
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VL
Sbjct: 235 DI---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVL 291
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +D
Sbjct: 292 DEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVD 351
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA--- 380
LVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 352 LVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNP 411
Query: 381 DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 412 HIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDV 471
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVE 499
E+YIHRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+ ++
Sbjct: 472 ESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMD 531
Query: 500 AAETITQVSDSVIPAFKSAAEELLNNSG 527
A ++ VS + + F+ +A+ L+ G
Sbjct: 532 AIRSLASVSYAAVDFFRPSAQRLIEEKG 559
>gi|348509639|ref|XP_003442355.1| PREDICTED: nucleolar RNA helicase 2-like [Oreochromis niloticus]
Length = 755
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 203/427 (47%), Positives = 278/427 (65%), Gaps = 16/427 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S FRIS +KLK++G+ LF IQ TF+ V DG D++ +ARTG GKT +F +P++E
Sbjct: 159 AFSNFRISKVTIDKLKARGVSYLFDIQVKTFNHVYDGEDVIAQARTGTGKTFSFAIPLVE 218
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
L K S + GR P VLVL PTRELA QV +DF V + C YGG+ Y+
Sbjct: 219 KLQ----KDSVEMARGRPPKVLVLTPTRELAIQVAKDFKDIAKRVSI--ACFYGGSSYNP 272
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG-- 287
Q ++ GID+++GTPGRIKDHI+ ++L+ +K VLDE D+ML MGF E VE ILG
Sbjct: 273 QIDAIRNGIDILVGTPGRIKDHIQNNKLNLTKVKHVVLDEVDQMLDMGFAEQVEEILGSS 332
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K D N QTLLFSAT P WV ++ K+++ + K IDL+G + KA+T V H+ + C
Sbjct: 333 YKKDSDTNP-QTLLFSATCPPWVYEVAKKYMRPNCKHIDLIGKKTQKAATTVEHLAITCH 391
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQL---ADLLPGARALHGDIQQSQREVT 401
S R+ VI D+I+ YS S GRTI+F ETK+ A++L A + ++LHGDI Q QRE+T
Sbjct: 392 WSQRAAVIGDVIQVYSGSHGRTIVFCETKKEANELSMNASIKQSTQSLHGDIPQKQREMT 451
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR+G F LVATNVAARGLDI +V L++QC PP+DVE+YIHRSGRTGRAG TGV +
Sbjct: 452 LKGFRNGAFEVLVATNVAARGLDIPEVDLVVQCSPPKDVESYIHRSGRTGRAGRTGVCIC 511
Query: 462 LYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y + + + +E ++G+ F + P DI K++ +A + V + I F+++AE
Sbjct: 512 FYQRKEEDQLRYVENKAGITFRRVGVPTANDIIKSSSKDAVRFLDSVPVAAIGYFRASAE 571
Query: 521 ELLNNSG 527
+L+ G
Sbjct: 572 KLIEERG 578
>gi|410975243|ref|XP_003994043.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Felis catus]
Length = 645
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 216/508 (42%), Positives = 305/508 (60%), Gaps = 31/508 (6%)
Query: 29 ETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKKKKK 88
+TE + SD+ K K +I+E E++S+ S L + S+
Sbjct: 74 DTEEGCNNRLSDEFSKSHKSRRKDLSNGDIDEYEKKSKRVSSLDSSTHKSSDN------- 126
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
K+E E+ EQ+ G A S F IS + LK +G+ LFPIQ TF V +G D
Sbjct: 127 -KLE-ESLTREQKEG------AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKD 178
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF
Sbjct: 179 LIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFK 234
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VL
Sbjct: 235 DI---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVL 291
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +D
Sbjct: 292 DEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVD 351
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA--- 380
LVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 352 LVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNP 411
Query: 381 DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 412 HIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDV 471
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVE 499
E+YIHRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+ ++
Sbjct: 472 ESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMD 531
Query: 500 AAETITQVSDSVIPAFKSAAEELLNNSG 527
A ++ VS + + F+ +A+ L+ G
Sbjct: 532 AIRSLASVSYAAVDFFRPSAQRLIEEKG 559
>gi|345798960|ref|XP_850174.2| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Canis lupus
familiaris]
Length = 739
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 216/508 (42%), Positives = 304/508 (59%), Gaps = 31/508 (6%)
Query: 29 ETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKKKKK 88
+TE + SD+ K K +I+E E++S+ S L + S+
Sbjct: 74 DTEEGCNNRLSDEFSKSHKSRRKDLSNGDIDEYEKKSKRVSSLDSSTHKSSDN------- 126
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
K+E E EQ+ G A S F IS + LK +G+ LFPIQ TF V +G D
Sbjct: 127 -KLE-ETLTREQKEG------AFSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKD 178
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF
Sbjct: 179 LIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFK 234
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VL
Sbjct: 235 DI---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVL 291
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +D
Sbjct: 292 DEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVD 351
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA--- 380
LVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 352 LVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNP 411
Query: 381 DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 412 HIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDV 471
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVE 499
E+YIHRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+ ++
Sbjct: 472 ESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMD 531
Query: 500 AAETITQVSDSVIPAFKSAAEELLNNSG 527
A ++ VS + + F+ +A+ L+ G
Sbjct: 532 AIRSLASVSYAAVDFFRPSAQRLIEEKG 559
>gi|149511215|ref|XP_001519332.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Ornithorhynchus
anatinus]
Length = 790
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/427 (47%), Positives = 277/427 (64%), Gaps = 16/427 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS LK +G+ LFPIQ TF V +G D+V +ARTG GKT +F +P+ E
Sbjct: 183 AFSNFPISEQTIRLLKDRGVTYLFPIQVKTFHHVYEGRDVVAQARTGTGKTFSFAIPLTE 242
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L + +K GY P VLVL PTRELA QV +DF D+ LT C YGG PY+
Sbjct: 243 KLQR--KREEQKRGY--PPKVLVLTPTRELANQVAKDFKDI---TRTLTVACFYGGTPYN 295
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q ++KGID+++GTPGRIKDH+E G +DL+ L VLDE D+ML MGF EDVE I+
Sbjct: 296 GQIDLIRKGIDILVGTPGRIKDHLESGRLDLTKLYHVVLDEVDQMLDMGFAEDVEKIISG 355
Query: 289 V---EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
E + QTLLFSAT P WV ++ K++K+ + +DL+G KA+T V H+ + C
Sbjct: 356 AYNRESEDNPQTLLFSATCPQWVYKVAKKYMKAKYEQVDLIGKLTQKAATTVEHLAIQCR 415
Query: 346 SSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVT 401
+ R+ VI D+I+ YS GR I+F ETK+ A+++A ++ A+ALHGDI QSQRE+T
Sbjct: 416 ENQRAAVIGDVIQVYSGNQGRAIVFCETKKDATEMALNSNIKQEAQALHGDIAQSQREIT 475
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR+G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG TG+ +
Sbjct: 476 LKGFRNGVFKVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICIC 535
Query: 462 LYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
+ PR + + +E++SG+ F+H++ P DI +A+ +A ++ V + F++ A+
Sbjct: 536 FFQPRERCQLRYVEQKSGITFKHVNIPSLVDIIQASSKDAISSLASVPLEALEKFRTYAK 595
Query: 521 ELLNNSG 527
L+ G
Sbjct: 596 TLIEEKG 602
>gi|332218192|ref|XP_003258243.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Nomascus leucogenys]
Length = 783
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 208/448 (46%), Positives = 286/448 (63%), Gaps = 23/448 (5%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK +G+ LFPIQA TF V G D
Sbjct: 173 SEIEQEIPVEQKE-------GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKD 225
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L + + GR P VLVL PTRELA QV +DF
Sbjct: 226 LIAQARTGTGKTFSFAIPLIEKLH----EELQDRKRGRPPQVLVLAPTRELANQVSKDFS 281
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK VL
Sbjct: 282 DI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVL 338
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 339 DEVDQMLDMGFADQVEEILSVAYKKDSEDDPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 398
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 399 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNS 458
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 459 AIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 518
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVE 499
E+YIHRSGRTGRAG TGV + Y ++ + ++E+++G+KF+ I P +I KA+ +
Sbjct: 519 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKD 578
Query: 500 AAETITQVSDSVIPAFKSAAEELLNNSG 527
A + V + I FK +AE+L+ G
Sbjct: 579 AIRLLDSVPPTAISHFKQSAEKLIEEKG 606
>gi|311271292|ref|XP_003133100.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Sus scrofa]
Length = 738
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 217/511 (42%), Positives = 309/511 (60%), Gaps = 35/511 (6%)
Query: 26 DFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKK 85
D EE L ++ S +KS++K+ S +IEE ++S+ S L + S+ + +
Sbjct: 74 DTEEGCNRLADEFSKSRKSRRKDLSN----GDIEEYGKKSKRVSSLDSSTHKSSDNKPE- 128
Query: 86 KKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLD 145
E+ EQ+ G A S F IS + LK +G+ LFPIQ TF V +
Sbjct: 129 --------ESLTREQKEG------AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYE 174
Query: 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205
G DL+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +
Sbjct: 175 GKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAK 230
Query: 206 DF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264
DF D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+
Sbjct: 231 DFKDI---TKKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRH 287
Query: 265 RVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
VLDE D+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS +
Sbjct: 288 VVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 347
Query: 322 TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA 380
+DLVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 348 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMA 407
Query: 381 ---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP
Sbjct: 408 MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPP 467
Query: 438 RDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAA 496
+DVE+YIHRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+
Sbjct: 468 QDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 527
Query: 497 GVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
++A ++ VS + + F+ +A+ L+ G
Sbjct: 528 SMDAIRSLASVSYAAVDFFRPSAQRLIEEKG 558
>gi|338716828|ref|XP_001503679.3| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Equus
caballus]
Length = 739
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 218/511 (42%), Positives = 310/511 (60%), Gaps = 35/511 (6%)
Query: 26 DFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKK 85
D EE L+++ S +KS++K+ S +I+E E++S+ L + +K
Sbjct: 74 DTEEGCNRLSDEFSKTQKSRRKDLSN----GDIDEYEKKSKRVPSL--------DSSTQK 121
Query: 86 KKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLD 145
K+E E EQ+ G A S F IS + LK +G+ LFPIQ TF V +
Sbjct: 122 SSDNKLE-ETLTREQKEG------AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYE 174
Query: 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205
G DL+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +
Sbjct: 175 GKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAK 230
Query: 206 DF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264
DF D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+
Sbjct: 231 DFKDI---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRH 287
Query: 265 RVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
VLDE D+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS +
Sbjct: 288 VVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 347
Query: 322 TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA 380
+DLVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 348 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMA 407
Query: 381 ---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP
Sbjct: 408 MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPP 467
Query: 438 RDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAA 496
+DVE+YIHRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+
Sbjct: 468 QDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 527
Query: 497 GVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
++A ++ VS + + F+ +A+ L+ G
Sbjct: 528 SMDAIRSLASVSYAAVDFFRPSAQRLIEEKG 558
>gi|338716830|ref|XP_003363525.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Equus
caballus]
Length = 644
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 218/511 (42%), Positives = 310/511 (60%), Gaps = 35/511 (6%)
Query: 26 DFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKK 85
D EE L+++ S +KS++K+ S +I+E E++S+ L + +K
Sbjct: 74 DTEEGCNRLSDEFSKTQKSRRKDLSN----GDIDEYEKKSKRVPSL--------DSSTQK 121
Query: 86 KKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLD 145
K+E E EQ+ G A S F IS + LK +G+ LFPIQ TF V +
Sbjct: 122 SSDNKLE-ETLTREQKEG------AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYE 174
Query: 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205
G DL+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +
Sbjct: 175 GKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAK 230
Query: 206 DF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264
DF D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+
Sbjct: 231 DFKDI---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRH 287
Query: 265 RVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
VLDE D+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS +
Sbjct: 288 VVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 347
Query: 322 TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA 380
+DLVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 348 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMA 407
Query: 381 ---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP
Sbjct: 408 MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPP 467
Query: 438 RDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAA 496
+DVE+YIHRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+
Sbjct: 468 QDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 527
Query: 497 GVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
++A ++ VS + + F+ +A+ L+ G
Sbjct: 528 SMDAIRSLASVSYAAVDFFRPSAQRLIEEKG 558
>gi|345798963|ref|XP_851746.2| PREDICTED: nucleolar RNA helicase 2 [Canis lupus familiaris]
Length = 785
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 203/427 (47%), Positives = 278/427 (65%), Gaps = 16/427 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++
Sbjct: 189 AFSNFPISEETIKLLKARGVTFLFPIQAKTFYHVYSGKDLIAQARTGTGKTFSFAIPLIV 248
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L G + K+ GRAP VLVL PTRELA QV DF D+ L C YGG PY
Sbjct: 249 KL-QGELQDRKR---GRAPQVLVLAPTRELANQVSRDFSDI---TRKLAVACFYGGTPYG 301
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF + VE IL
Sbjct: 302 GQIERMRNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSV 361
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV +++ K++KS + +DL+G + K + V H+ + C
Sbjct: 362 AYKKDSEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCH 421
Query: 346 SSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVT 401
+ R+ VI D+IR YS GRTIIF ETK+ A +L+ + A++LHGDI Q QRE+T
Sbjct: 422 WTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNVSIRQDAQSLHGDIPQKQREIT 481
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR+G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG TG+ +
Sbjct: 482 LKGFRNGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICIC 541
Query: 462 LYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y ++ ++++E+++G+KF+ I P +I KA+ +A + V + I FK +AE
Sbjct: 542 FYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAE 601
Query: 521 ELLNNSG 527
+L+ G
Sbjct: 602 KLIEEKG 608
>gi|332218194|ref|XP_003258244.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Nomascus leucogenys]
Length = 715
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 208/448 (46%), Positives = 286/448 (63%), Gaps = 23/448 (5%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK +G+ LFPIQA TF V G D
Sbjct: 105 SEIEQEIPVEQKE-------GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKD 157
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L + + GR P VLVL PTRELA QV +DF
Sbjct: 158 LIAQARTGTGKTFSFAIPLIEKLH----EELQDRKRGRPPQVLVLAPTRELANQVSKDFS 213
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK VL
Sbjct: 214 DI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVL 270
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 271 DEVDQMLDMGFADQVEEILSVAYKKDSEDDPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 330
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 331 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNS 390
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 391 AIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 450
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVE 499
E+YIHRSGRTGRAG TGV + Y ++ + ++E+++G+KF+ I P +I KA+ +
Sbjct: 451 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKD 510
Query: 500 AAETITQVSDSVIPAFKSAAEELLNNSG 527
A + V + I FK +AE+L+ G
Sbjct: 511 AIRLLDSVPPTAISHFKQSAEKLIEEKG 538
>gi|194205947|ref|XP_001917975.1| PREDICTED: nucleolar RNA helicase 2 [Equus caballus]
Length = 785
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 206/448 (45%), Positives = 286/448 (63%), Gaps = 23/448 (5%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK++G+ LFPIQA TF V G D
Sbjct: 175 SELEQEIPVEQKE-------GAFSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKD 227
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L + + GRAP VLVL PTRELA QV DF
Sbjct: 228 LIAQARTGTGKTFSFAIPLIEKLQ----RELQDRKRGRAPQVLVLAPTRELANQVSRDFS 283
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L C YGG PY Q +++ GID+++GTPGRIKDH++ G +DL+ LK VL
Sbjct: 284 DI---TKKLAVACFYGGTPYGGQIERMRNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVL 340
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 341 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVD 400
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLADLL 383
L+G + K + V H+ + C + R+ VI D+IR YS RTIIF ETK+ A +L+ +
Sbjct: 401 LIGKKTQKTAMTVEHLAIKCHWTQRAAVIGDVIRVYSGYQRRTIIFCETKKEAQELSQSV 460
Query: 384 P---GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 461 SIKLDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 520
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVE 499
E+YIHRSGRTGRAG TG+ + Y + + ++++E+++G+KF+ I P +I KA+ +
Sbjct: 521 ESYIHRSGRTGRAGRTGICICFYQHKEEHQLAQVEQKAGIKFKRIGVPSATEIIKASSKD 580
Query: 500 AAETITQVSDSVIPAFKSAAEELLNNSG 527
A + V + I FK +AE+L+ G
Sbjct: 581 AIRLLDSVPPTAISHFKQSAEKLIEEKG 608
>gi|187960121|ref|NP_001120807.1| nucleolar RNA helicase 2 [Danio rerio]
gi|169642686|gb|AAI60629.1| Ddx21 protein [Danio rerio]
Length = 759
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 206/438 (47%), Positives = 284/438 (64%), Gaps = 15/438 (3%)
Query: 99 EQERGESEH-PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQ 157
EQE+ E A S FRIS + L+++G+ LF IQ TF+ V DG DL+G+ARTG
Sbjct: 155 EQEKETPEQREGAFSNFRISPNTIKLLQARGVSYLFDIQVKTFNAVYDGKDLIGQARTGT 214
Query: 158 GKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLT 217
GKT +F +P++E L +G + + GR P VLVL PTRELA QV +DF + +T
Sbjct: 215 GKTFSFAVPLVEKLQSGDQERRR----GRPPKVLVLAPTRELAIQVTKDFKDITRKLSVT 270
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
C YGG+ Y+ Q ++ GIDV++GTPGRI+DH++ +DLS L+ VLDE D+ML MG
Sbjct: 271 --CFYGGSSYNPQIDAIRSGIDVLVGTPGRIRDHLQNNKLDLSQLQHVVLDEVDQMLDMG 328
Query: 278 FVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAS 334
F E VE IL K + K QTLLFSAT PSWV ++ K+++S +DL+G + KA+
Sbjct: 329 FAEQVEEILSASYKKDAEQKPQTLLFSATCPSWVYDVAKKYMRSQFIHVDLIGKKTQKAA 388
Query: 335 TNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALH 390
T V H+ + C S R+ VI D+I+ YS S GRTI+F ETK+ A++L+ + A++LH
Sbjct: 389 TTVEHLAIACHWSQRASVIGDVIQVYSGSHGRTIVFCETKKEATELSLNTSIKQSAQSLH 448
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
GDI Q QREVTL GFR+G F LVATNVAARGLDI +V L+IQ PP DVE+YIHRSGRT
Sbjct: 449 GDIPQKQREVTLKGFRNGSFEVLVATNVAARGLDIPEVDLVIQSSPPNDVESYIHRSGRT 508
Query: 451 GRAGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSD 509
GRAG TG+ + Y ++ S K +E+++G+ F+ + P DI +++ +A + V
Sbjct: 509 GRAGRTGICICFYQRKEESQLKFVEQKAGITFKRVGVPTAYDIIQSSSKDAVRFLDSVPA 568
Query: 510 SVIPAFKSAAEELLNNSG 527
+ F+ AA+EL+ G
Sbjct: 569 VAVGYFREAAQELIQQRG 586
>gi|410975245|ref|XP_003994044.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Felis catus]
gi|410975247|ref|XP_003994045.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Felis catus]
Length = 712
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/427 (47%), Positives = 278/427 (65%), Gaps = 16/427 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK +G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E
Sbjct: 116 AFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIE 175
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L G + K+ GRAP VLVL PTRELA QV DF D+ L C YGG PY
Sbjct: 176 KL-QGELQDRKR---GRAPRVLVLAPTRELANQVSRDFSDI---TRKLAVACFYGGTPYG 228
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF + VE IL
Sbjct: 229 GQIERMRNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSV 288
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV +++ K+++S + +DL+G + K + V H+ + C
Sbjct: 289 AYKKDSEDNPQTLLFSATCPHWVYNVAKKYMRSTYEQVDLIGKKTQKTAITVEHLAIKCH 348
Query: 346 SSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVT 401
+ R+ VI D+IR YS GRTIIF ETK+ A +L+ + A++LHGDI Q QRE+T
Sbjct: 349 WTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNVSIKQDAQSLHGDIPQKQREIT 408
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG TG+ +
Sbjct: 409 LKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICIC 468
Query: 462 LYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y ++ ++++E+++G+KF+ I P +I KA+ +A + V + I FK +AE
Sbjct: 469 FYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAIGHFKQSAE 528
Query: 521 ELLNNSG 527
+L+ G
Sbjct: 529 KLIEEKG 535
>gi|395820612|ref|XP_003783657.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Otolemur garnettii]
Length = 737
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 225/564 (39%), Positives = 316/564 (56%), Gaps = 61/564 (10%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSET---------- 67
M K+ D E EA L E S +K+ +K + K R + +E+ E E
Sbjct: 1 MPGKLLWGDIMELEAPLEESESQRKERQKSDRRKSRHHYDSDEKSETRENGVVNDLDAPK 60
Query: 68 ----------SSELGEPVN-LKSEKEKKKKKKAKVEPEAGVEEQER--------GESEHP 108
+ + E N L E K K + K P ++E E+ S H
Sbjct: 61 PKKAKMKEKLNGDAEEGFNRLSDEFSKSHKSRRKDLPNGDIDEYEKKSKRISSLDSSTHK 120
Query: 109 N----------------AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
+ A S F IS + LK +G+ LFPIQ TF V +G DL+ +
Sbjct: 121 SNDNKLEETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQ 180
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYG 211
ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF D+
Sbjct: 181 ARTGTGKTFSFAIPLIERLQRSQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI-- 234
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D
Sbjct: 235 -TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVD 293
Query: 272 EMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG
Sbjct: 294 QMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGK 353
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLP 384
KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A +
Sbjct: 354 MTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQ 413
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444
A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YI
Sbjct: 414 NAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYI 473
Query: 445 HRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAET 503
HRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+ ++A +
Sbjct: 474 HRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRS 533
Query: 504 ITQVSDSVIPAFKSAAEELLNNSG 527
+ VS + + F+ +A+ L+ G
Sbjct: 534 LASVSYAAVDFFRPSAQRLIEEKG 557
>gi|432106714|gb|ELK32366.1| ATP-dependent RNA helicase DDX50 [Myotis davidii]
Length = 721
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 218/511 (42%), Positives = 308/511 (60%), Gaps = 35/511 (6%)
Query: 26 DFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKK 85
D EE L+ + S KS++K+ S +I+E E+ S+ S L + S+
Sbjct: 72 DTEEGYNTLSNEFSKSHKSRRKDLSN----GDIDEYEKTSKRVSSLDSSTHKSSDN---- 123
Query: 86 KKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLD 145
K+E E EQ+ G A S F IS + LK +G+ LFPIQ TF V +
Sbjct: 124 ----KLE-ETLTREQKEG------AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYE 172
Query: 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205
G DL+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +
Sbjct: 173 GKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAK 228
Query: 206 DF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264
DF D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+
Sbjct: 229 DFKDI---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRH 285
Query: 265 RVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
VLDE D+ML +GF + VE I+ K + + QTLLFSAT P WV ++ K++KS +
Sbjct: 286 VVLDEVDQMLDLGFADQVEDIIHESYKTDAEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 345
Query: 322 TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA 380
+DLVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 346 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMA 405
Query: 381 ---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP
Sbjct: 406 MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPP 465
Query: 438 RDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAA 496
+DVE+YIHRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+
Sbjct: 466 QDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 525
Query: 497 GVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
++A ++ VS + + F+ +A+ L+ G
Sbjct: 526 SMDAIRSLASVSYAAVDFFRPSAQRLIEEKG 556
>gi|410925948|ref|XP_003976441.1| PREDICTED: nucleolar RNA helicase 2-like [Takifugu rubripes]
Length = 713
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 205/431 (47%), Positives = 276/431 (64%), Gaps = 24/431 (5%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S FRIS KLK++G+ LF IQ TFD V DG D++ +ARTG GKT +F +P++E
Sbjct: 131 AFSNFRISPVTINKLKARGVSYLFDIQVKTFDSVYDGEDVIAQARTGTGKTFSFAIPLVE 190
Query: 170 SL---TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGA 225
L + GP + GRAP VLVL PTRELA QV +DF D+ L+ C YGG
Sbjct: 191 KLQRDSAGPAR-------GRAPKVLVLTPTRELAIQVAKDFKDIIKK---LSIVCFYGGT 240
Query: 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285
Y Q ++ GID+++GTPGRIKDH++ +DLS LK VLDE D+ML MGF E VE I
Sbjct: 241 SYMPQIDAIRNGIDILVGTPGRIKDHLQNNKLDLSKLKHVVLDEVDQMLDMGFAEQVEEI 300
Query: 286 LG----KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV 341
L K D N QTLLFSAT P WV ++ K+++ K +DL+G + KA+T V H+
Sbjct: 301 LASSYKKDADTNP-QTLLFSATCPPWVYDVAKKYMRPKCKHVDLIGKKTQKAATTVEHLA 359
Query: 342 LPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQL---ADLLPGARALHGDIQQSQ 397
+ C S R+ VI D+I+ YS S GRTI+F ETK+ A++L A + ++LHGDI Q Q
Sbjct: 360 IACHWSQRAAVIGDVIQVYSGSHGRTIVFCETKKEANELSMNASIKQSTQSLHGDIPQKQ 419
Query: 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG 457
RE TL GFR+G F LVATNVAARGLDI +V L++QC PP+DVE+YIHRSGRTGRAG TG
Sbjct: 420 RETTLKGFRNGSFEVLVATNVAARGLDIPEVDLVVQCSPPKDVESYIHRSGRTGRAGRTG 479
Query: 458 VAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFK 516
V + Y + + + +E ++G+ F + P DI K++ +A + + + I F+
Sbjct: 480 VCICFYQRKEEDQLRYVENKAGITFRRVGVPTANDIIKSSSKDAVRFLDSIPVAAIGYFR 539
Query: 517 SAAEELLNNSG 527
++AE+L+ G
Sbjct: 540 ASAEKLIEERG 550
>gi|395820929|ref|XP_003783808.1| PREDICTED: nucleolar RNA helicase 2 [Otolemur garnettii]
Length = 769
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 218/494 (44%), Positives = 299/494 (60%), Gaps = 37/494 (7%)
Query: 64 RSETSSELGE---PVNLKSEKEKKKKKKAKV----------EPEAGVEEQERGESE---- 106
RSE SE+ + P +K EKE + AK EP++ E ES
Sbjct: 116 RSEEPSEVDDAPKPKRMKKEKEVNGEIVAKTPELKNGFSHSEPDSNSVEAASEESNSEIE 175
Query: 107 ----HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLA 162
H N S F+I +G+ LFPIQA TF V G DL+ +ARTG GKT +
Sbjct: 176 QVKLHFNHFSHFKIYNNTVNLFTGRGVTFLFPIQARTFHHVYSGKDLIAQARTGTGKTFS 235
Query: 163 FVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCL 221
F +P++E L G + K+ GR+P VLVL PTRELA QV +DF D+ L C
Sbjct: 236 FAIPLIEKL-QGELQDRKR---GRSPQVLVLAPTRELANQVSKDFSDI---TKKLAVACF 288
Query: 222 YGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVED 281
YGG PY Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF +
Sbjct: 289 YGGTPYGGQIERMRNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQ 348
Query: 282 VELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR 338
VE IL K + + QTLLFSAT P WV +++ K++K + +DL+G + K + V
Sbjct: 349 VEDILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKPTYEQVDLIGKKTQKTAITVE 408
Query: 339 HIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD---LLPGARALHGDIQ 394
H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+ + A++LHGDI
Sbjct: 409 HLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTAIKQDAQSLHGDIP 468
Query: 395 QSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
Q QRE+TL GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG
Sbjct: 469 QKQREITLKGFRNGAFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAG 528
Query: 455 NTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIP 513
TGV + Y ++ + ++E+++G+KF+ I P P +I KA+ +A + V + I
Sbjct: 529 RTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSPTEIIKASSKDAIRLLDSVPPTAIN 588
Query: 514 AFKSAAEELLNNSG 527
FK +AE+L+ G
Sbjct: 589 HFKESAEKLIEEKG 602
>gi|198419625|ref|XP_002130533.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
[Ciona intestinalis]
Length = 672
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 204/439 (46%), Positives = 283/439 (64%), Gaps = 19/439 (4%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
+ FRI+ + LK KG+ LFPIQ +F+ V DG D+V +ARTG GKTL+F +P++E L
Sbjct: 93 NNFRITEQTKVLLKKKGVAYLFPIQIQSFNHVYDGKDVVAQARTGTGKTLSFAIPLVEKL 152
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQ 230
K YGR P VLV+ PTRELA QV +DF D+ + GL+S C+YGG PY Q
Sbjct: 153 IMNRCK-----DYGRPPKVLVMAPTRELAIQVRKDFQDI---SQGLSSVCIYGGTPYFQQ 204
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV- 289
E ++ G+D+V+GTPGRI DH+++GN+ L S++ VLDE D+ML MGF VE ILG
Sbjct: 205 ERSMRGGVDIVVGTPGRIMDHVQKGNLQLGSVEHVVLDEVDQMLDMGFAPKVEEILGYAY 264
Query: 290 --EDANKVQTLLFSATLPSWVKHISTKFLK-SDKKTIDLVGNEKMKASTNVRHIVLPCSS 346
E QTLLFSAT P WV++ S K+++ S+ +D +G ++ +T V H+ + C
Sbjct: 265 TEEREGPPQTLLFSATCPPWVRNTSRKYMRPSETVHVDTIGKSLVRTATTVEHLAIRCQY 324
Query: 347 SARSQVIPDIIRCYS-SGGRTIIFTETKESASQL----ADLLPGARALHGDIQQSQREVT 401
S R++ I ++++ YS GR +IFT+TK+ A++L A A+ LHGDI+Q QRE+T
Sbjct: 325 SDRAECIGNVVQMYSGQHGRAMIFTDTKKDANELVVCEALQQQKAQVLHGDIEQRQREIT 384
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L +R G LVATNVAARGLDI ++ L+IQ PP D+++YIHRSGRTGRAG TGV V
Sbjct: 385 LKAYRDGTVRCLVATNVAARGLDIPEIDLVIQTSPPSDIDSYIHRSGRTGRAGRTGVCVC 444
Query: 462 LYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y PR+ + K+ER +G+KF+ + PQP DI KA+ +A ++ V + F AE
Sbjct: 445 FYKPREDMMIKKVERVAGIKFKMVGPPQPKDIVKASVNDAIASLDLVDKKITAEFMKHAE 504
Query: 521 ELLNNSGLSAAELLAKALA 539
++ +N A E LA ALA
Sbjct: 505 QVASNHAGGAMEALASALA 523
>gi|387018184|gb|AFJ51210.1| Nucleolar RNA helicase 2-like [Crotalus adamanteus]
Length = 701
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 208/458 (45%), Positives = 293/458 (63%), Gaps = 17/458 (3%)
Query: 79 SEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAM 138
S+KE + + E E+ ++QE + A + F IS + LK++G+ LFP+Q
Sbjct: 101 SKKENNSSEDSHTECESD-QDQELTAEQKEGAFANFDISKATVDLLKARGVSYLFPVQVK 159
Query: 139 TFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE 198
TF +L+G D++ +ARTG GKT +F +P++E L P + + GR+P VLVL PTRE
Sbjct: 160 TFMPILEGKDVIAQARTGTGKTFSFAIPLIEKLDRDPQERKR----GRSPKVLVLTPTRE 215
Query: 199 LAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI 257
LA QV DF D+ LT C YGG Y+ Q ++ GID+++GTPGRIKDH++ +
Sbjct: 216 LAMQVARDFKDI---TKKLTVACFYGGTAYNGQLDLIRNGIDILVGTPGRIKDHLQNNKL 272
Query: 258 DLSSLKFRVLDEADEMLRMGFVEDVELIL---GKVEDANKVQTLLFSATLPSWVKHISTK 314
D+S L+ VLDE D+ML MGF E VE IL K + + QTLLFSAT P WV +++ K
Sbjct: 273 DISKLRHVVLDEVDQMLDMGFAEQVEEILVNSYKKDSEDNPQTLLFSATCPQWVYNVAKK 332
Query: 315 FLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETK 373
++KS + DL+G + K +T V H+ + C S R+ VI D+I+ YS S GRTIIF ETK
Sbjct: 333 YMKSKYEQFDLIGKKTKKTATTVEHLAIECHWSQRAAVIGDVIQVYSGSHGRTIIFCETK 392
Query: 374 ESASQL---ADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQL 430
+ A++L A + A++LHGDI Q QREVTL GFR+G F LVATNVAARGLDI +V L
Sbjct: 393 KEATELALNASIKQDAQSLHGDIPQKQREVTLKGFRNGAFEVLVATNVAARGLDIPEVDL 452
Query: 431 IIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQP 489
+IQ PP+DVE+YIHRSGRTGRAG TG+ + Y R+ + ++E+++G+ F+ + P
Sbjct: 453 VIQSSPPKDVESYIHRSGRTGRAGRTGLCICFYQRREDYQLKQVEQKAGITFKRVGVPTA 512
Query: 490 ADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
DI KA+ +A ++ V S I F+ +AE+L+ G
Sbjct: 513 TDIIKASSKDAIRSLDSVPPSAIDYFRQSAEQLIEEKG 550
>gi|351702494|gb|EHB05413.1| ATP-dependent RNA helicase DDX50 [Heterocephalus glaber]
Length = 737
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 221/511 (43%), Positives = 312/511 (61%), Gaps = 35/511 (6%)
Query: 26 DFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKK 85
D EE L+++ S K +KK+ +I+E E++S+ S L E +K
Sbjct: 73 DTEEGFNRLSDEFSTSPKLRKKDLPN----GDIDECEKKSKQVSSL--------ESSTQK 120
Query: 86 KKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLD 145
K++ E EQ+ G A S F IS + LK +G+ LFPIQ TF V +
Sbjct: 121 SSDNKLQ-ETLTREQKEG------AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYE 173
Query: 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205
G DL+ +ARTG GKT +F +P++E L +A KK+ R+P VLVL PTRELA QV +
Sbjct: 174 GKDLIAQARTGTGKTFSFAIPLIERLQRN-QEAIKKS---RSPKVLVLAPTRELANQVAK 229
Query: 206 DF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264
DF D+ L+ C YGG Y +Q ++ GID++IGTPGRIKDH++ G +DLS L+
Sbjct: 230 DFKDI---TRKLSVACFYGGTSYQSQINHIRNGIDILIGTPGRIKDHLQSGRLDLSKLRH 286
Query: 265 RVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
VLDE D+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS +
Sbjct: 287 VVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 346
Query: 322 TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA 380
+DLVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 347 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMA 406
Query: 381 ---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP
Sbjct: 407 MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPP 466
Query: 438 RDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAA 496
+DVE+YIHRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+
Sbjct: 467 QDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 526
Query: 497 GVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
++A ++ VS + + F+ +A+ L+ G
Sbjct: 527 SMDAIRSLASVSYAAVDFFRPSAQRLIEEKG 557
>gi|432852515|ref|XP_004067286.1| PREDICTED: nucleolar RNA helicase 2-like [Oryzias latipes]
Length = 775
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 226/521 (43%), Positives = 310/521 (59%), Gaps = 48/521 (9%)
Query: 47 KESSKKRKESEIEEEEERS---ETSSELGEPVNLKSEKEKK-------KKKKAKVEPEAG 96
K+ +KK K I+ EE++ E ++ + + V +K KK KK+K K E
Sbjct: 90 KQKTKKSKNGNIDTVEEQNGHMEEANGISDDVQTPKQKTKKSKNGNIDKKQKQKANEETA 149
Query: 97 VEEQ----------------ERGESEHP----NAVSRFRISVPLREKLKSKGIESLFPIQ 136
++E E+ E P A S FRIS KLK++G+ LF IQ
Sbjct: 150 IKEHSTPNTPSPSSDDSCDSEKETEETPEQKEGAFSNFRISQVTINKLKARGVSYLFDIQ 209
Query: 137 AMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT 196
TF+ V DG D++ +ARTG GKT +F +P++E L K +T GR P VLVL PT
Sbjct: 210 VKTFNPVYDGEDVLAQARTGTGKTFSFAIPLVERLQ----KEGGETTRGRPPKVLVLTPT 265
Query: 197 RELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG 255
RELA QV +DF DV + L C YGG+ Y+ Q ++ GID+++GTPGRIKDH++
Sbjct: 266 RELAIQVAKDFKDV---SKKLAIACFYGGSSYNPQLDAIRNGIDILVGTPGRIKDHLQNH 322
Query: 256 NIDLSSLKFRVLDEADEMLRMGFVEDVELILG----KVEDANKVQTLLFSATLPSWVKHI 311
++LS LK VLDE D+ML MGF E VE IL K D N QTLLFSAT P WV +
Sbjct: 323 KLNLSDLKHVVLDEVDQMLDMGFAEQVEEILSLSYKKDSDTNP-QTLLFSATCPPWVYEV 381
Query: 312 STKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFT 370
+ K+++ K +DL+G + +A+T V H+ + C S R+ VI D+I+ YS S GRTIIF
Sbjct: 382 AKKYMRPGCKHVDLIGKKTQRAATTVEHLAIACHWSQRAAVIGDVIQVYSGSHGRTIIFC 441
Query: 371 ETKESASQL---ADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIND 427
ETK+ A++L A + ++ LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +
Sbjct: 442 ETKKEANELSMNASIKQSSQTLHGDIPQKQREITLKGFRNGAFEVLVATNVAARGLDIPE 501
Query: 428 VQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISA 486
V L++Q PP+DVE+YIHRSGRTGRAG TGV + Y + + + +E ++G+ F +
Sbjct: 502 VDLVVQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQRKEEEQLRYVENKAGITFRRVGV 561
Query: 487 PQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
P DI KA+ +A + V + I FK +AE+L+ G
Sbjct: 562 PTANDIIKASSKDAVRFLDSVPVTAIEYFKESAEKLIEERG 602
>gi|291404256|ref|XP_002718616.1| PREDICTED: nucleolar protein GU2-like [Oryctolagus cuniculus]
Length = 780
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 204/427 (47%), Positives = 279/427 (65%), Gaps = 16/427 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK++G+ LFP+QA TF V G DL+ +ARTG GKT +F +P++E
Sbjct: 185 AFSNFPISEETIKLLKARGVTFLFPVQAKTFHHVYSGRDLIAQARTGTGKTFSFAIPLIE 244
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L G + K+ GR P VLVL PTRELA QV +DF D+ L C YGG PY
Sbjct: 245 KL-QGELQDRKR---GRPPQVLVLAPTRELANQVSKDFSDI---TKKLAVACFYGGTPYG 297
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q +++ GID+++GTPGRIKDH+E G +DLS LK VLDE D+ML MGF + VE IL
Sbjct: 298 NQIERMRNGIDILVGTPGRIKDHLENGKLDLSKLKHVVLDEVDQMLDMGFADQVEDILKV 357
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV +++ K++K+ + +DL+G + K + V H+ + C
Sbjct: 358 AYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKATYEQVDLIGKKTQKTAITVEHLAIKCH 417
Query: 346 SSARSQVIPDIIRCYSSG-GRTIIFTETKESA---SQLADLLPGARALHGDIQQSQREVT 401
S R+ VI D+IR YS GRTI+F ETK+ A SQ + + A++LHGDI Q QRE+T
Sbjct: 418 WSQRAAVIGDVIRVYSGHQGRTIVFCETKKEAQELSQNSSIKQDAQSLHGDIPQKQREIT 477
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG TGV +
Sbjct: 478 LKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCIC 537
Query: 462 LYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y ++ ++++E+++G+KF+ I P +I KA+ +A + V + I FK +AE
Sbjct: 538 FYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAE 597
Query: 521 ELLNNSG 527
+L+ G
Sbjct: 598 KLIEEKG 604
>gi|344275095|ref|XP_003409349.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Loxodonta africana]
Length = 734
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 217/511 (42%), Positives = 310/511 (60%), Gaps = 35/511 (6%)
Query: 26 DFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKK 85
D EE + L+++ S KS++K+ +++E E++S+ S L + S+
Sbjct: 73 DTEEGFSRLSDEFSKSHKSRRKDLPN----GDVDECEKKSKRVSSLDGSTHRSSDN---- 124
Query: 86 KKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLD 145
K+E E EQ+ G A S F IS + LK +G+ LFPIQ TF V +
Sbjct: 125 ----KLE-ETLTREQKEG------AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYE 173
Query: 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205
G DL+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +
Sbjct: 174 GKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAK 229
Query: 206 DF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264
DF D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+
Sbjct: 230 DFKDI---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRH 286
Query: 265 RVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
VLDE D+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS +
Sbjct: 287 VVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 346
Query: 322 TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA 380
+DLVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 347 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMA 406
Query: 381 ---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP
Sbjct: 407 MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPP 466
Query: 438 RDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAA 496
+DVE+YIHRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+
Sbjct: 467 QDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 526
Query: 497 GVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
++A ++ VS + + F+ +A+ L+ G
Sbjct: 527 SMDAIRSLASVSYAAVDFFRPSAQRLIEEKG 557
>gi|194376400|dbj|BAG62959.1| unnamed protein product [Homo sapiens]
Length = 711
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 225/564 (39%), Positives = 315/564 (55%), Gaps = 61/564 (10%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSET--SSELGEPV 75
M K+ D E EA L E S KK+ +K + K R + +E+ E E + +L P
Sbjct: 1 MPGKLLWGDIMELEAPLEESESQKKERQKSDRRKSRHHYDSDEKSETRENGVTDDLDAPK 60
Query: 76 -------------------NLKSEKEKKKKKKAKVEPEAGVEEQER--------GESEHP 108
L E K K + K P ++E E+ S H
Sbjct: 61 AKKSKMKEKLNGDTEEGFNRLSDEFSKSHKSRRKDLPNGDIDEYEKKSKRVSSLDTSTHK 120
Query: 109 N----------------AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
+ A S F IS + LK +G+ LFPIQ TF V +G DL+ +
Sbjct: 121 SSDNKLEDTLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQ 180
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYG 211
ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF D+
Sbjct: 181 ARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI-- 234
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
L+ YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D
Sbjct: 235 -TRKLSVAWFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVD 293
Query: 272 EMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG
Sbjct: 294 QMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGK 353
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLP 384
KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A +
Sbjct: 354 MTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQ 413
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444
A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YI
Sbjct: 414 NAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYI 473
Query: 445 HRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAET 503
HRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+ ++A +
Sbjct: 474 HRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRS 533
Query: 504 ITQVSDSVIPAFKSAAEELLNNSG 527
+ VS + + F+ +A+ L+ G
Sbjct: 534 LASVSYAAVDFFRPSAQRLIEEKG 557
>gi|449667535|ref|XP_002167654.2| PREDICTED: nucleolar RNA helicase 2-like [Hydra magnipapillata]
Length = 685
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 203/450 (45%), Positives = 292/450 (64%), Gaps = 14/450 (3%)
Query: 86 KKKAKVEPEAGVEEQER--GESEHPNA-VSRFRISVPLREKLKSKGIESLFPIQAMTFDM 142
K+ ++P VEE+E GE E ++RF IS KL + GI++ FP+Q+ T++
Sbjct: 30 KRLYSLQPVFQVEEKENNVGEREADKGDLNRFEISKSTMTKLNAIGIKAFFPVQSTTYNA 89
Query: 143 VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ 202
+ +GSD++ +ARTG GKTLAF LP++E L + T GR P VL L PTRELA Q
Sbjct: 90 IFEGSDVIVQARTGTGKTLAFTLPVIERLN-----SENLTERGRVPLVLALAPTRELAMQ 144
Query: 203 VHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSL 262
++++ + + + C YGG+ Y QE +L++G+D ++GTPGRI D I+RG +DL+ L
Sbjct: 145 IYQEVEKFKPN-NVQVSCFYGGSSYEKQEGELRRGVDFLVGTPGRIADLIQRGVLDLTKL 203
Query: 263 KFRVLDEADEMLRMGFVEDVELILGK-VEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
K +LDEAD M+ MGF +DVE IL A K T LF T+P W++ S K+L S+ K
Sbjct: 204 KHVILDEADRMMDMGFQDDVEKILKHSYTSARKPPTFLFFGTVPPWLQQNSKKYLSSNLK 263
Query: 322 TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLA 380
DL+G +K K +T V+H V+ CS R +I DI++ YS G+TIIFT TK+ A++L+
Sbjct: 264 VFDLIGEDKNKGATPVQHKVIKCSYWERPLLIKDIMQLYSGKFGKTIIFTTTKQEANELS 323
Query: 381 --DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR 438
+P ++ LHGDI QSQRE+TL GFR+GKF L+AT+VAARGLDI +V L+IQ EPP
Sbjct: 324 VESSIPDSQVLHGDISQSQREITLQGFRNGKFNCLIATDVAARGLDIPEVDLVIQTEPPN 383
Query: 439 DVEAYIHRSGRTGRAGNTGVAVMLYDP-RKSSVSKIERESGVKFEHISAPQPADIAKAAG 497
D++ YIHR+GRTGRAG +GV V+ Y P ++S ++ +E+ +GV FE I+ P P +I +
Sbjct: 384 DIDFYIHRAGRTGRAGRSGVCVVFYKPGQESEIAAVEKRTGVTFEKITPPNPEEIVSSCA 443
Query: 498 VEAAETITQVSDSVIPAFKSAAEELLNNSG 527
+A ++ +V+ VI F A EL+ G
Sbjct: 444 DDAIRSLEKVNSDVISFFIKPARELIEKKG 473
>gi|355683371|gb|AER97085.1| DEAD box polypeptide 50 [Mustela putorius furo]
Length = 736
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 222/564 (39%), Positives = 312/564 (55%), Gaps = 61/564 (10%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSET---------- 67
M K+ D E EA L E S +K+ +K + K R + +E+ E E
Sbjct: 1 MPGKLLWGDIMELEAPLEETESQRKERQKSDRRKSRHHYDSDEKSETRENGVADNLDGPK 60
Query: 68 ------------SSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQER------------- 102
+E G L E K K + K ++E E+
Sbjct: 61 PKKAKLKEKLNGDTEEGCNNRLSDEFSKSHKSRRKDLSNGDIDEYEKKSKRVSSLDSSPK 120
Query: 103 ----------GESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
+ A S F IS + LK +G+ LFPIQ TF V +G DL+ +
Sbjct: 121 SSDNKVEETLTREQKEGAFSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQ 180
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYG 211
ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF D+
Sbjct: 181 ARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI-- 234
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D
Sbjct: 235 -TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVD 293
Query: 272 EMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG
Sbjct: 294 QMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGK 353
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLP 384
KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A +
Sbjct: 354 MTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQ 413
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444
A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YI
Sbjct: 414 NAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYI 473
Query: 445 HRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAET 503
HRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+ ++A +
Sbjct: 474 HRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRS 533
Query: 504 ITQVSDSVIPAFKSAAEELLNNSG 527
+ VS + + F+ +A+ L+ G
Sbjct: 534 LASVSYAAVDFFRPSAQRLIEEKG 557
>gi|298712936|emb|CBJ26838.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 694
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 208/436 (47%), Positives = 277/436 (63%), Gaps = 21/436 (4%)
Query: 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVL 165
+HP +V F IS + L+++GI +LFPIQA TF+ + G DL+GRARTG GKTLAF +
Sbjct: 145 QHP-SVDEFDISETTKGHLRNRGITTLFPIQAQTFEHIRRGKDLIGRARTGMGKTLAFAV 203
Query: 166 PILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA 225
P++E L + K GR P VLV+ PTRELAKQV DF++ A L + C+YGGA
Sbjct: 204 PVIEKLLMAGAGSLKP---GRKPRVLVMAPTRELAKQVAADFELT--APSLKTTCIYGGA 258
Query: 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285
PY QE L+ G+DVV+GTPGR+ DH+ RG + LS +F +LDEAD+ML MGF E++E +
Sbjct: 259 PYRPQEDALRWGVDVVVGTPGRLLDHVGRGTLQLSDAEFIILDEADQMLDMGFKEEMEKV 318
Query: 286 LGKV--EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343
E Q LLFSAT+P WV + +++K D+ IDLV +KAS +V HI +P
Sbjct: 319 FEACGEEGEQGRQMLLFSATMPPWVDKVVKEYMKEDRVFIDLVKEGTVKASKDVEHIGIP 378
Query: 344 CSSSARSQVIPDIIRCYSSGG--RTIIFTETKESASQLA---DLLPGARALHGDIQQSQR 398
C ++RS I DI+ Y +GG RTI+F TK ++L + +ALHGDI Q+ R
Sbjct: 379 CHWTSRSSTINDIVSVYGAGGNKRTIVFCTTKRDCNELCMDPKMTYDCQALHGDITQANR 438
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR------DVEAYIHRSGRTGR 452
E TLAGF+ G F LVAT+VAARGLD+ V L++ EPP D E+Y+HRSGRTGR
Sbjct: 439 ESTLAGFKKGSFKVLVATDVAARGLDMI-VDLVLNAEPPTHQSGRVDTESYVHRSGRTGR 497
Query: 453 AGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSV 511
AG G+ + LY PR + + +IER G F APQP DI A+ A + I V DSV
Sbjct: 498 AGRKGMCITLYTPRQRGGLGEIERHIGNDFAWRGAPQPDDIVNASAGAAIDDIRAVDDSV 557
Query: 512 IPAFKSAAEELLNNSG 527
I +K+AAE+L++ G
Sbjct: 558 IDLYKTAAEQLIDEKG 573
>gi|26334341|dbj|BAC30888.1| unnamed protein product [Mus musculus]
Length = 669
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/427 (46%), Positives = 274/427 (64%), Gaps = 16/427 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK +G+ LFPIQ TF V +G DL+ +ARTG GKT +F +P++E
Sbjct: 70 AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 129
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L K R+P VLVL PTRELA QV +DF D+ L+ C YGG Y
Sbjct: 130 RLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI---TRKLSVACFYGGTSYQ 182
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
+Q +++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E VE I+
Sbjct: 183 SQINQIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHE 242
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV ++ K++KS + +DLVG KA+T V H+ + C
Sbjct: 243 SYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH 302
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVT 401
S R VI D+++ YS S GR IIF ETK++ +++A + A+ LHGDI QSQRE+T
Sbjct: 303 WSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREIT 362
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG TG+ V
Sbjct: 363 LKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVC 422
Query: 462 LYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y PR + + +E+++G+ F+ + P D+ K+ ++A ++ VS + + F+ +A+
Sbjct: 423 FYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQ 482
Query: 521 ELLNNSG 527
L+ G
Sbjct: 483 RLIEEKG 489
>gi|60551791|gb|AAH90996.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Mus musculus]
Length = 734
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/427 (46%), Positives = 274/427 (64%), Gaps = 16/427 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK +G+ LFPIQ TF V +G DL+ +ARTG GKT +F +P++E
Sbjct: 135 AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 194
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L K R+P VLVL PTRELA QV +DF D+ L+ C YGG Y
Sbjct: 195 RLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI---TRKLSVACFYGGTSYQ 247
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
+Q +++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E VE I+
Sbjct: 248 SQINQIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHE 307
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV ++ K++KS + +DLVG KA+T V H+ + C
Sbjct: 308 SYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH 367
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVT 401
S R VI D+++ YS S GR IIF ETK++ +++A + A+ LHGDI QSQRE+T
Sbjct: 368 WSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREIT 427
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG TG+ V
Sbjct: 428 LKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVC 487
Query: 462 LYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y PR + + +E+++G+ F+ + P D+ K+ ++A ++ VS + + F+ +A+
Sbjct: 488 FYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQ 547
Query: 521 ELLNNSG 527
L+ G
Sbjct: 548 RLIEEKG 554
>gi|16716475|ref|NP_444413.1| ATP-dependent RNA helicase DDX50 [Mus musculus]
gi|55976576|sp|Q99MJ9.1|DDX50_MOUSE RecName: Full=ATP-dependent RNA helicase DDX50; AltName: Full=DEAD
box protein 50; AltName: Full=Gu-beta; AltName:
Full=Nucleolar protein Gu2
gi|13540306|gb|AAK29403.1|AF334104_1 nucleolar protein GU2 [Mus musculus]
Length = 734
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/427 (46%), Positives = 274/427 (64%), Gaps = 16/427 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK +G+ LFPIQ TF V +G DL+ +ARTG GKT +F +P++E
Sbjct: 135 AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 194
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L K R+P VLVL PTRELA QV +DF D+ L+ C YGG Y
Sbjct: 195 RLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI---TRKLSVACFYGGTSYQ 247
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
+Q +++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E VE I+
Sbjct: 248 SQINQIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHE 307
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV ++ K++KS + +DLVG KA+T V H+ + C
Sbjct: 308 SYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH 367
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVT 401
S R VI D+++ YS S GR IIF ETK++ +++A + A+ LHGDI QSQRE+T
Sbjct: 368 WSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREIT 427
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG TG+ V
Sbjct: 428 LKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVC 487
Query: 462 LYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y PR + + +E+++G+ F+ + P D+ K+ ++A ++ VS + + F+ +A+
Sbjct: 488 FYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQ 547
Query: 521 ELLNNSG 527
L+ G
Sbjct: 548 RLIEEKG 554
>gi|148700135|gb|EDL32082.1| mCG141508, isoform CRA_a [Mus musculus]
Length = 624
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/427 (46%), Positives = 274/427 (64%), Gaps = 16/427 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK +G+ LFPIQ TF V +G DL+ +ARTG GKT +F +P++E
Sbjct: 70 AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 129
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L K R+P VLVL PTRELA QV +DF D+ L+ C YGG Y
Sbjct: 130 RLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI---TRKLSVACFYGGTSYQ 182
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
+Q +++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E VE I+
Sbjct: 183 SQINQIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHE 242
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV ++ K++KS + +DLVG KA+T V H+ + C
Sbjct: 243 SYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH 302
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVT 401
S R VI D+++ YS S GR IIF ETK++ +++A + A+ LHGDI QSQRE+T
Sbjct: 303 WSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREIT 362
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG TG+ V
Sbjct: 363 LKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVC 422
Query: 462 LYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y PR + + +E+++G+ F+ + P D+ K+ ++A ++ VS + + F+ +A+
Sbjct: 423 FYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQ 482
Query: 521 ELLNNSG 527
L+ G
Sbjct: 483 RLIEEKG 489
>gi|449504709|ref|XP_002190981.2| PREDICTED: nucleolar RNA helicase 2-like [Taeniopygia guttata]
Length = 716
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 203/439 (46%), Positives = 285/439 (64%), Gaps = 18/439 (4%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + L+++G+ LFP+Q TF+ V G D++ +ARTG GKT +F +P++E
Sbjct: 137 AFSNFSISKETVQLLQARGVTYLFPVQVKTFNPVYTGKDVIAQARTGTGKTFSFAIPLIE 196
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L G ++ ++ GR P VLVL PTRELA QV +DF D+ LT C YGG PY+
Sbjct: 197 KL-QGESQERRR---GRPPKVLVLCPTRELANQVAKDFKDI---TRKLTVGCFYGGTPYN 249
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q ++ GID+++GTPGRIKDH++ G +DL+ +K VLDE D+ML MGF E VE IL
Sbjct: 250 GQIDLMRSGIDILVGTPGRIKDHLQNGKLDLTKVKHVVLDEVDQMLDMGFAEQVEDILRV 309
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV ++ K++K+ + IDL+G + KA+T V H+ + C
Sbjct: 310 AYKKDSEDNPQTLLFSATCPHWVYDVAKKYMKTRYEQIDLIGKKTQKAATTVEHLAIECH 369
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVT 401
S R+ VI D+I+ YS S GRTI+F ETK+ A++LA + ++LHGDI Q QRE+T
Sbjct: 370 WSQRAAVIGDVIQVYSGSQGRTIVFCETKKEANELALNASIKQDCQSLHGDIPQKQREIT 429
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG TG+ +
Sbjct: 430 LKGFRNGSFKVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICIC 489
Query: 462 LYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y ++ + +E+++G+ F+ + P DI KA+ +A + V + I F+ +A+
Sbjct: 490 FYQRKEEYQLRHVEQKAGITFKRVGVPTATDIIKASSKDAMRCLDSVPQTAIEYFRESAQ 549
Query: 521 ELLNNSGLSAAELLAKALA 539
L+ G A LA ALA
Sbjct: 550 LLIKEKGPVNA--LAAALA 566
>gi|148700137|gb|EDL32084.1| mCG141508, isoform CRA_c [Mus musculus]
Length = 689
Score = 387 bits (994), Expect = e-104, Method: Compositional matrix adjust.
Identities = 198/427 (46%), Positives = 274/427 (64%), Gaps = 16/427 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK +G+ LFPIQ TF V +G DL+ +ARTG GKT +F +P++E
Sbjct: 135 AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 194
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L K R+P VLVL PTRELA QV +DF D+ L+ C YGG Y
Sbjct: 195 RLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI---TRKLSVACFYGGTSYQ 247
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
+Q +++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E VE I+
Sbjct: 248 SQINQIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHE 307
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV ++ K++KS + +DLVG KA+T V H+ + C
Sbjct: 308 SYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH 367
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVT 401
S R VI D+++ YS S GR IIF ETK++ +++A + A+ LHGDI QSQRE+T
Sbjct: 368 WSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREIT 427
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG TG+ V
Sbjct: 428 LKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVC 487
Query: 462 LYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y PR + + +E+++G+ F+ + P D+ K+ ++A ++ VS + + F+ +A+
Sbjct: 488 FYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQ 547
Query: 521 ELLNNSG 527
L+ G
Sbjct: 548 RLIEEKG 554
>gi|395501398|ref|XP_003755082.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Sarcophilus harrisii]
Length = 736
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 199/428 (46%), Positives = 274/428 (64%), Gaps = 18/428 (4%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A SRF IS + LK++G+ LFPIQ TF V +G DL+ +ARTG GKT +F +P++E
Sbjct: 135 AFSRFPISEETVKLLKARGVTYLFPIQVKTFSPVYEGKDLIAQARTGTGKTFSFAIPLIE 194
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L + K R+P VLVL PTRELA QV +DF D+ L+ C YGG PY
Sbjct: 195 KLQRDQEEMKK----NRSPKVLVLAPTRELANQVAKDFQDI---TRKLSVACFYGGTPYQ 247
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q +++GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML MGF + VE I+
Sbjct: 248 GQINHIRRGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDMGFADQVEDIIHG 307
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + QTLLFSAT P WV ++ K++K+ + IDLVG K +T V H+ + C
Sbjct: 308 SYKTGSEDNPQTLLFSATCPQWVYKVAKKYMKTKYEEIDLVGKMTQKTATTVEHLAIQCH 367
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREV 400
S R+ VI D+I+ YS + GR IIF ETK++ +++A L P A+ LHGDI QSQRE+
Sbjct: 368 WSQRAAVIGDVIQVYSGNDGRAIIFCETKKNVAEMA-LNPHIKQNAQCLHGDIAQSQREI 426
Query: 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV 460
TL GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG TG+ +
Sbjct: 427 TLKGFREGNFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICI 486
Query: 461 MLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAA 519
Y P + + +E ++G+ F+ + P D+ K+ ++A ++ VS + F+ +A
Sbjct: 487 CFYQPNERGQLKYVEGKAGITFKRVGVPTTMDLVKSRSMDAIRSLASVSFVAVEFFRPSA 546
Query: 520 EELLNNSG 527
+ L+ G
Sbjct: 547 QRLIEEKG 554
>gi|199561314|ref|NP_001013216.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Rattus norvegicus]
Length = 734
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 198/427 (46%), Positives = 273/427 (63%), Gaps = 16/427 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK +G+ LFPIQ TF V +G DL+ +ARTG GKT +F +P++E
Sbjct: 135 AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 194
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L K R+P VLVL PTRELA QV +DF D+ L C YGG Y
Sbjct: 195 RLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI---TRKLNVACFYGGTSYQ 247
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
+Q +++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E VE I+
Sbjct: 248 SQINQIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHE 307
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV ++ K++KS + +DLVG KA+T V H+ + C
Sbjct: 308 SYKSDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH 367
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVT 401
S R VI D+++ YS S GR IIF ETK++ +++A + A+ LHGDI QSQRE+T
Sbjct: 368 WSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREIT 427
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG TG+ V
Sbjct: 428 LKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVC 487
Query: 462 LYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y PR + + +E+++G+ F+ + P D+ K+ ++A ++ VS + + F+ +A+
Sbjct: 488 FYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQ 547
Query: 521 ELLNNSG 527
L+ G
Sbjct: 548 RLIEEKG 554
>gi|291404258|ref|XP_002718495.1| PREDICTED: nucleolar protein GU2 [Oryctolagus cuniculus]
Length = 735
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 195/427 (45%), Positives = 273/427 (63%), Gaps = 16/427 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
+ S F IS + LK +G+ LFPIQ TF + +G DL+ +ARTG GKT +F +P++E
Sbjct: 136 SFSNFSISEETVKLLKGRGVTYLFPIQVKTFGPIYEGKDLIAQARTGTGKTFSFAIPLIE 195
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L K R+P VLVL PTRELA QV +DF D+ L+ C YGG Y
Sbjct: 196 RLQRNQETVKK----SRSPKVLVLAPTRELANQVAKDFKDI---TRKLSVACFYGGTSYQ 248
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
+Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E VE I+
Sbjct: 249 SQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHE 308
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV ++ K++KS + +DLVG KA+T V H+ + C
Sbjct: 309 SYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH 368
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVT 401
S R VI D+++ YS S GR IIF ETK++ +++A + A+ LHGDI QSQRE+T
Sbjct: 369 WSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREIT 428
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG TG+ +
Sbjct: 429 LKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICIC 488
Query: 462 LYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y PR + + +E+++G+ F+ + P D+ K+ ++A ++ VS + + F+ +A+
Sbjct: 489 FYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQ 548
Query: 521 ELLNNSG 527
L+ G
Sbjct: 549 RLIEEKG 555
>gi|149038674|gb|EDL92963.1| rCG22084, isoform CRA_b [Rattus norvegicus]
Length = 689
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 198/427 (46%), Positives = 273/427 (63%), Gaps = 16/427 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK +G+ LFPIQ TF V +G DL+ +ARTG GKT +F +P++E
Sbjct: 135 AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 194
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L K R+P VLVL PTRELA QV +DF D+ L C YGG Y
Sbjct: 195 RLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI---TRKLNVACFYGGTSYQ 247
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
+Q +++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E VE I+
Sbjct: 248 SQINQIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHE 307
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV ++ K++KS + +DLVG KA+T V H+ + C
Sbjct: 308 SYKSDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH 367
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVT 401
S R VI D+++ YS S GR IIF ETK++ +++A + A+ LHGDI QSQRE+T
Sbjct: 368 WSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREIT 427
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG TG+ V
Sbjct: 428 LKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVC 487
Query: 462 LYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y PR + + +E+++G+ F+ + P D+ K+ ++A ++ VS + + F+ +A+
Sbjct: 488 FYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQ 547
Query: 521 ELLNNSG 527
L+ G
Sbjct: 548 RLIEEKG 554
>gi|327277992|ref|XP_003223747.1| PREDICTED: nucleolar RNA helicase 2-like [Anolis carolinensis]
Length = 628
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 202/433 (46%), Positives = 281/433 (64%), Gaps = 16/433 (3%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
E + A S F +S + LK++G+ LFP+Q TF + +G D++ +ARTG GKT +F
Sbjct: 43 EEKKEGAFSNFDLSKATVDLLKARGVTYLFPVQVKTFKHISEGKDVIAQARTGTGKTFSF 102
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLY 222
+P++E L + S++ GR P VLVL PTRELA QV DF DV LT C Y
Sbjct: 103 AIPLIEKLQ----RDSQERKRGRTPKVLVLAPTRELAMQVARDFKDV---TRKLTVACFY 155
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG Y+ Q ++ GID+++GTPGRIKDH+E G +++SSLK VLDE D+ML MGF + V
Sbjct: 156 GGTAYNGQLDLIRNGIDILVGTPGRIKDHLENGKLEISSLKHVVLDEVDQMLDMGFADQV 215
Query: 283 ELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRH 339
E IL K + + QTLLFSAT P WV ++ K++KS + IDL+G + K + V H
Sbjct: 216 EDILKYAYKKDSEDNPQTLLFSATCPHWVYDVAKKYMKSKYEQIDLIGKKTKKTAMTVEH 275
Query: 340 IVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQ 395
+ + C S R+ VI D+++ YS S GRTIIF ETK+ A++LA + A++LHGDI Q
Sbjct: 276 LAIECHWSQRAAVIGDVLQVYSGSHGRTIIFCETKKEATELALNASIKQDAQSLHGDIPQ 335
Query: 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN 455
QREVTL GFR+G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG
Sbjct: 336 KQREVTLKGFRNGAFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGR 395
Query: 456 TGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPA 514
TG+ + Y ++ + ++E+++G+ F+ + P DI KA+ +A +++ V S I
Sbjct: 396 TGMCICFYQRKEDYQLKQVEQKAGITFKRVGVPTATDIIKASSKDAIKSLDSVPPSAIDY 455
Query: 515 FKSAAEELLNNSG 527
F+ +AE L+ G
Sbjct: 456 FRQSAERLIEEKG 468
>gi|167515852|ref|XP_001742267.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778891|gb|EDQ92505.1| predicted protein [Monosiga brevicollis MX1]
Length = 591
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/423 (46%), Positives = 278/423 (65%), Gaps = 19/423 (4%)
Query: 116 ISVPLRE----KLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
+S PLR + +KG LF IQ+ TF +L+G D++G+ARTG+GKTL+F LPI+E L
Sbjct: 2 LSNPLRRSRTPHMLTKGYTKLFEIQSRTFTPILEGKDILGKARTGEGKTLSFALPIIELL 61
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
+ G GRAP L + PTRELA QV ++F G + L S C+YGGAPY QE
Sbjct: 62 LK-----EGRNGRGRAPRALCMAPTRELAHQVGKEFADIGPS--LASTCVYGGAPYMPQE 114
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELI--LGKV 289
+++G+DV+IGTPGR+KDH+++G + L+ +K+ +LDEAD ML GFVE ++ I +
Sbjct: 115 SAIRRGLDVIIGTPGRLKDHLDKGTLKLTDIKYLILDEADRMLEQGFVEAIDEIQKMTIA 174
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
+ K Q +LFSAT+P ++ ++ + T+D VG+ + + S V H+ + C + R
Sbjct: 175 QSGGKPQMILFSATMPDFILSTVKNYM-PNHVTVDTVGSSRNRTSKGVDHLAIKCPWTER 233
Query: 350 SQVIPDIIRCYSSG-GRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVTLAGF 405
VI D+++ YS GRTIIFT+TK+ A++LA DL + LHGDI Q QRE++L F
Sbjct: 234 RAVIADVVQMYSGAHGRTIIFTQTKKDANELALETDLRQEVQVLHGDIPQKQREMSLQAF 293
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
R GK LVAT+VAARGLDI +V L++QCEPP+DVE+YIHRSGRTGRAG TG + Y P
Sbjct: 294 RDGKVRCLVATDVAARGLDIPEVDLVVQCEPPKDVESYIHRSGRTGRAGRTGTCICFYKP 353
Query: 466 -RKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLN 524
++ ++ +ER +G+ F I APQP D+ KA+ +A ++ ++DSV+ FK AA EL+
Sbjct: 354 NQEDAMRYVERRAGISFRRIGAPQPEDVIKASARDAFRSLEAINDSVLAHFKDAARELIE 413
Query: 525 NSG 527
G
Sbjct: 414 ERG 416
>gi|431904164|gb|ELK09586.1| ATP-dependent RNA helicase DDX50 [Pteropus alecto]
Length = 738
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 217/511 (42%), Positives = 309/511 (60%), Gaps = 35/511 (6%)
Query: 26 DFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKK 85
D EE L+++ S KS++K+ S +I+E E++S+ S L + S+
Sbjct: 74 DTEEGYNRLSDEFSKSHKSRRKDLSN----GDIDEYEKKSKQVSSLDSSSHKSSDN---- 125
Query: 86 KKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLD 145
K+E E EQ+ G+ S F IS + LK +G+ LFPIQ TF V +
Sbjct: 126 ----KLE-ETLTREQKEGD------FSNFPISEETVKLLKGRGVTYLFPIQVKTFGPVYE 174
Query: 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205
G DL+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +
Sbjct: 175 GKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAK 230
Query: 206 DF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264
DF D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+
Sbjct: 231 DFKDI---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRH 287
Query: 265 RVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
VLDE D+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++K +
Sbjct: 288 VVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKPRYE 347
Query: 322 TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA 380
+DLVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 348 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMA 407
Query: 381 ---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP
Sbjct: 408 MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPP 467
Query: 438 RDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAA 496
+DVE+YIHRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+
Sbjct: 468 QDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 527
Query: 497 GVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
++A ++ VS + + F+ +A+ L+ G
Sbjct: 528 SMDAIRSLASVSYAAVDFFRPSAQRLIEEKG 558
>gi|126343381|ref|XP_001380653.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Monodelphis domestica]
Length = 744
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 205/451 (45%), Positives = 285/451 (63%), Gaps = 25/451 (5%)
Query: 87 KKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG 146
K +K+E + E++E A SRF IS + LK++G+ LFPIQ F V +G
Sbjct: 127 KYSKLEEDLTPEQKE-------GAFSRFPISEETIKLLKARGVTYLFPIQVKAFSPVYEG 179
Query: 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206
DL+ +ARTG GKT +F +P++E L + KKT R+P VLVL PTRELA QV +D
Sbjct: 180 KDLIAQARTGTGKTFSFAIPLIEKLQRDQEEL-KKT---RSPKVLVLAPTRELANQVAKD 235
Query: 207 F-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265
F D+ L+ C YGG PY Q +++GID+++GTPGRIKDH++ G +DLS L+
Sbjct: 236 FQDI---TRKLSVACFYGGTPYQGQINHIRRGIDILVGTPGRIKDHLQSGRLDLSKLRHV 292
Query: 266 VLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKT 322
VLDE D+ML MGF + VE I+ K + QTLLFSAT P WV ++ K++K+ +
Sbjct: 293 VLDEVDQMLDMGFADQVEDIIHGSYKTGSEDNPQTLLFSATCPQWVYKVAKKYMKTKYEE 352
Query: 323 IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD 381
IDLVG K +T V H+ + C S R+ VI D+I+ YS + GR IIF ETK++ +++A
Sbjct: 353 IDLVGKMTQKTATTVEHLAIQCHWSQRAAVIGDVIQVYSGNDGRAIIFCETKKNVAEMA- 411
Query: 382 LLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
L P A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP
Sbjct: 412 LNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPP 471
Query: 438 RDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAA 496
+DVE+YIHRSGRTGRAG TG+ + Y P + + +E ++G+ F+ + P D+ K+
Sbjct: 472 QDVESYIHRSGRTGRAGRTGICICFYQPNERGQLKYVEGKAGITFKRVGVPTTMDLVKSR 531
Query: 497 GVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
++A ++ VS + F+ +A+ L+ G
Sbjct: 532 SMDAIRSLASVSFVAVEFFRPSAQRLIEEKG 562
>gi|118092587|ref|XP_001232052.1| PREDICTED: nucleolar RNA helicase 2 [Gallus gallus]
Length = 713
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 218/526 (41%), Positives = 314/526 (59%), Gaps = 43/526 (8%)
Query: 48 ESSKKRK---------------------ESEIEEEEERSETSSELGEPVNLKSEKEKKKK 86
+ ++KRK ++ ++ E S E ++ ++ KK+
Sbjct: 47 DKARKRKPQTDESEQSEEECSSPKLKKAKTGGKQNGHVREESPENARLSSVSAKSTHKKR 106
Query: 87 KKAKVEPEAG----VEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDM 142
E +G +EQE E + A S F IS + L+++G+ LFP+Q TF+
Sbjct: 107 HSNSSETSSGDGDSDQEQEMTEEQKEGAFSNFPISKGTIQLLQARGVTYLFPVQVKTFNP 166
Query: 143 VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ 202
V G D++ +ARTG GKT +F +P++E L S++ GR+P VLVL PTRELA Q
Sbjct: 167 VYSGKDVIAQARTGTGKTFSFAIPLIEKL----QADSQERRRGRSPKVLVLAPTRELANQ 222
Query: 203 VHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSS 261
V +DF D+ LT C YGG PY+ Q ++ GID+++GTPGRIKDH++ G +DL+
Sbjct: 223 VAKDFKDI---TRKLTVACFYGGTPYNGQIDLIRSGIDILVGTPGRIKDHLQNGKLDLTK 279
Query: 262 LKFRVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKS 318
+K VLDE D+ML MGF E VE IL K + + QTLLFSAT P+WV ++ K++KS
Sbjct: 280 VKHVVLDEVDQMLDMGFAEQVEDILRVAYKKDSEDNPQTLLFSATCPNWVYDVAKKYMKS 339
Query: 319 DKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESAS 377
+ +DL+G + KA+T V H+ + C S R+ VI D+I+ YS S GRTI+F ETK+ A+
Sbjct: 340 KYEQVDLIGRKTQKAATTVEHLAIECHWSQRAAVIGDVIQVYSGSYGRTIVFCETKKDAN 399
Query: 378 QL---ADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQC 434
+L A + ++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++Q
Sbjct: 400 ELALNASIKQDCQSLHGDIPQKQREITLKGFRNGAFKVLVATNVAARGLDIPEVDLVVQS 459
Query: 435 EPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIA 493
PP+DVE+YIHRSGRTGRAG TG+ + Y + ++ + +E ++G+ F+ + P DI
Sbjct: 460 SPPKDVESYIHRSGRTGRAGRTGICICFYQRKEENQLRYVEVKAGITFKRVGVPTATDII 519
Query: 494 KAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALA 539
KA+ +A + V + I FK +A+ L+ G A LA ALA
Sbjct: 520 KASSKDAIRCLDSVPQTAIEYFKESAQLLIEEKGPVNA--LAAALA 563
>gi|417412883|gb|JAA52800.1| Putative nucleolar rna helicase 2, partial [Desmodus rotundus]
Length = 840
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 211/475 (44%), Positives = 290/475 (61%), Gaps = 50/475 (10%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK++G+ LFPIQA TF V G D
Sbjct: 203 SELEQEIPVEQKE-------GAFSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKD 255
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L G + K+ GRAP VLVL PTRELA QV +DF
Sbjct: 256 LIAQARTGTGKTFSFAIPLIEKLL-GELQERKR---GRAPQVLVLAPTRELANQVSKDFI 311
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQ---------------------------EFKLKKGIDV 240
D+ L C YGG PY Q +++ GID+
Sbjct: 312 DI---TKKLAVACFYGGTPYGGQIERMRNGIDILVGTPGRIKDHLXYGGQLERMRNGIDI 368
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG---KVEDANKVQT 297
++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF + VE IL K + + QT
Sbjct: 369 LVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQT 428
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LLFSAT P WV +++ K++KS + +DL+G + K + V H+ + C + R+ VI D+I
Sbjct: 429 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 488
Query: 358 RCYSS-GGRTIIFTETKESA---SQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTL 413
R YS GRTIIF ETK+ A SQ A + A++LHGDI Q QRE+TL GFR+G F L
Sbjct: 489 RVYSGFHGRTIIFCETKKEAQELSQNASIRQDAQSLHGDIPQKQREITLKGFRNGDFGVL 548
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSK 472
VATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG TGV + Y ++ +++
Sbjct: 549 VATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQ 608
Query: 473 IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
+E+++G+KF+ I P +I KA+ +A + V + I FK +AE+L+ G
Sbjct: 609 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKG 663
>gi|300120547|emb|CBK20101.2| unnamed protein product [Blastocystis hominis]
Length = 553
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 217/462 (46%), Positives = 286/462 (61%), Gaps = 30/462 (6%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ESE A+ R+RIS L SKGI LFPIQA++FD + DG DL+GRA TGQGKTLAF
Sbjct: 10 ESESLYAMHRYRISPETIGILHSKGITELFPIQALSFDAIYDGKDLIGRAPTGQGKTLAF 69
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223
LPI+E + + +++ RAP LVL PTRELA+Q+ E + A L + CL+G
Sbjct: 70 ALPIVEKIYKLNLRPPRRS---RAPLCLVLSPTRELAQQIDEQIRMI--APSLRTVCLFG 124
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283
GAP+ QEF L++G++ V+GTPGR+ DH+ERG + L L++ +LDEAD ML MGF EDVE
Sbjct: 125 GAPFDPQEFALRRGVEFVVGTPGRVLDHLERGTLQLGELQWFILDEADRMLDMGFSEDVE 184
Query: 284 LIL-----------GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMK 332
++ G +++Q LLFSAT+PSWV+ + TK++ DK T+DLV EK K
Sbjct: 185 KVVDYAIKSGGETKGPRIVPDRIQVLLFSATIPSWVREVMTKYMHPDKVTVDLV-TEKEK 243
Query: 333 ASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLAD---LLPGARA 388
AS +VRH+VL C AR++VI D+I Y GR I+F + K+S ++LA L A
Sbjct: 244 ASVDVRHLVLRCPWEARAKVIADLIEVYCGVDGRAIVFCDMKKSCNELAGEECLRSIAGV 303
Query: 389 LHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP------RDVEA 442
LHGDI Q RE TL F+ GKF LVAT+VAARGLDI + L+I EPP DVE
Sbjct: 304 LHGDIPQKTREQTLKDFKDGKFRCLVATDVAARGLDIQGITLVINREPPATRSGVADVET 363
Query: 443 YIHRSGRTGRAGNTGVAVMLYD--PRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEA 500
YIHRSGRTGRAG GV + L +++ + IE+ G F I APQP+D+ KA
Sbjct: 364 YIHRSGRTGRAGRKGVCITLSTGFAQEAVLQSIEKAVGNAFTRIGAPQPSDLLKARAERL 423
Query: 501 AETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAV 542
E I + + +I S AEE+L + A +A+ L AV
Sbjct: 424 VERIGDLDEQLITKMDSLAEEVLAKTSDPRAA-VARCLCLAV 464
>gi|348685693|gb|EGZ25508.1| hypothetical protein PHYSODRAFT_326516 [Phytophthora sojae]
Length = 962
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 214/489 (43%), Positives = 300/489 (61%), Gaps = 35/489 (7%)
Query: 67 TSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKS 126
T+ E+ E +SE E KKAK E V G +E+P + F I + LK+
Sbjct: 68 TTPEISE----ESEVETPAAKKAKNENATHV-----GGTENP-PLESFDICAETVKNLKA 117
Query: 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186
+GI +LFPIQAMTFD +L G DL+GRARTG GKTLAF LP++E L K + GR
Sbjct: 118 RGIHTLFPIQAMTFDKILAGKDLMGRARTGMGKTLAFALPVIELLL----KDKRPRSRGR 173
Query: 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
AP V+ + PTRELAKQV +F+ G + L++ C+YGGA Y +Q + G+D+++GT G
Sbjct: 174 APRVVCMAPTRELAKQVATEFEQSGPS--LSTVCIYGGASYQSQNNAFRSGVDILVGTTG 231
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG-----KVEDANKVQTLLFS 301
R+ DHI+RGN+ L + +F +LDEAD ML MGF EDV+ + K E + K QTLLFS
Sbjct: 232 RVIDHIDRGNLRLHNCEFLILDEADTMLEMGFREDVQKVFAAMEQTKNESSGKRQTLLFS 291
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
AT+P WV ++ K++ D++ ++LV + +AST+V+HI +PC R ++ +++ Y+
Sbjct: 292 ATIPKWVTDVADKYMAKDREYVNLVKDSDDQASTDVQHIAIPCHWQGRPTLLANLLGVYA 351
Query: 362 -SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
RTIIF ETK+ ++LA ++ + LHGDI Q QRE T+ FR G+ L+AT+
Sbjct: 352 KKDSRTIIFAETKKDCNELAVHPEIKTDCQVLHGDIAQEQRETTMKAFREGRLRLLIATD 411
Query: 418 VAARGLDINDVQLIIQCEPPR------DVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSV 470
VAARGLD+N V L+I EPPR DV+ Y+HRSGRTGRAG G+ + LY R + +
Sbjct: 412 VAARGLDMN-VDLVINSEPPRKMSGMADVDTYVHRSGRTGRAGKKGICITLYTNRQRDQL 470
Query: 471 SKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSA 530
++IER+ G KF P D+ KA+ +A I V S+I F+ A ELL +
Sbjct: 471 TQIERKIGNKFIMKGPPDQEDLIKASAAKALTEINNVDPSMIEIFQEKAAELLGQ--MDP 528
Query: 531 AELLAKALA 539
+ LA ALA
Sbjct: 529 EKCLAAALA 537
>gi|407954645|dbj|BAM48570.1| malignant cell derived RNA helicase [Homo sapiens]
Length = 731
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 216/507 (42%), Positives = 305/507 (60%), Gaps = 36/507 (7%)
Query: 17 KMNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVN 76
KM +K+ D EE L+++ S KS++K+ +I+E E++S+ S L +
Sbjct: 65 KMKEKLN-GDTEEGFNRLSDEFSKSHKSRRKDLPN----GDIDEYEKKSKRVSSLDTSTH 119
Query: 77 LKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQ 136
S+ K+E E EQ+ G A S F IS + LK +G+ LFPIQ
Sbjct: 120 KSSDN--------KLE-ETLTREQKEG------AFSNFPISEETIKLLKGRGVTYLFPIQ 164
Query: 137 AMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT 196
TF V +G DL+ +ARTG GKT +F +P++E L K R+P VLVL PT
Sbjct: 165 LKTFGHVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPT 220
Query: 197 RELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG 255
RELA QV +DF D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G
Sbjct: 221 RELANQVAKDFKDI---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSG 277
Query: 256 NIDLSSLKFRVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHIS 312
+DLS L+ VLDE D+ML +GF E VE I+ K + + QTLLFSAT P WV ++
Sbjct: 278 RLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVA 337
Query: 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTE 371
K++KS + + LVG KA+T V H+ + C S R VI D+++ YS S GR IIF E
Sbjct: 338 KKYMKSRYEQVALVGKMTQKAATPVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCE 397
Query: 372 TKESASQLA---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV 428
TK++ +++A + A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLD +V
Sbjct: 398 TKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDNPEV 457
Query: 429 QLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487
L+IQ PP+DVE+YIHRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P
Sbjct: 458 DLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVP 517
Query: 488 QPADIAKAAGVEAAETITQVSDSVIPA 514
D+ K+ ++A ++ VS + + A
Sbjct: 518 STMDLVKSKSMDAIRSLASVSYAAVSA 544
>gi|149511217|ref|XP_001519340.1| PREDICTED: nucleolar RNA helicase 2 [Ornithorhynchus anatinus]
Length = 757
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 202/447 (45%), Positives = 281/447 (62%), Gaps = 19/447 (4%)
Query: 92 EPEAGVEEQERGESEHP-NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLV 150
EP+A E Q+ +E A S F IS + LK++G+ LFPIQA TF V G D++
Sbjct: 154 EPKAADEPQQHLTAEQKEGAFSNFSISKETIQLLKARGVTYLFPIQAKTFGHVSSGKDVI 213
Query: 151 GRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DV 209
+ARTG GKT +F +P++E L + K GR P VLVL PTRELA QV DF D+
Sbjct: 214 AQARTGTGKTFSFAIPLIEKLQ----RDLKDQKRGRLPKVLVLTPTRELAIQVGRDFSDI 269
Query: 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269
LT C YGG Y+ Q ++ GID+++GTPGRI+DHI+ G ++L+SL+ VLDE
Sbjct: 270 ---TKKLTVACFYGGTAYNGQINHIRNGIDILVGTPGRIRDHIQSGRLNLTSLQHVVLDE 326
Query: 270 ADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLV 326
D+ML MGF E VE IL K + + QTLLFSAT P WV ++ K++K + +DL+
Sbjct: 327 VDQMLDMGFAEQVEEILSVAYKKDSEDNPQTLLFSATCPHWVYDVAKKYMKVKYEQVDLI 386
Query: 327 GNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLPG 385
G + K + V H+ + C + R+ VI +I+ YS + GRTI+F TK+ A++L+ L P
Sbjct: 387 GKKTQKTAMTVEHLAIKCHWAQRAAVIGTVIQVYSGTHGRTIVFCRTKKEATELS-LSPA 445
Query: 386 ----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVE 441
A++LHGDI Q QRE+TL GFRSG F LVATNVAARGLDI +V L++Q PP DVE
Sbjct: 446 IKQDAQSLHGDIPQKQREITLKGFRSGAFGVLVATNVAARGLDIPEVDLVVQSSPPEDVE 505
Query: 442 AYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEA 500
+YIHRSGRTGRAG TG+ V Y ++ +S++E+++G+ F+ I P +++ KA+ +
Sbjct: 506 SYIHRSGRTGRAGRTGICVCFYQAKEEYQLSQVEQKAGITFKRIGVPTTSEVVKASSKDV 565
Query: 501 AETITQVSDSVIPAFKSAAEELLNNSG 527
++ + I FK A EL+ G
Sbjct: 566 LRSLDSIPLHAINYFKQPARELIEEKG 592
>gi|301111464|ref|XP_002904811.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262095141|gb|EEY53193.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 681
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 215/502 (42%), Positives = 307/502 (61%), Gaps = 37/502 (7%)
Query: 54 KESEIEEEEERSETSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSR 113
+ E +EE ++ + E GE SE E KKAK E V G E+P ++
Sbjct: 62 RSREADEENNDTDPAEETGE-----SEVEAPAAKKAKNENATHV-----GGEENP-SLDN 110
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
FRI ++ L+++GI +LFPIQAMTFD ++DG DL+GRARTG GKTLAF LP++E L
Sbjct: 111 FRICDETKKNLQARGIHTLFPIQAMTFDKIVDGKDLMGRARTGMGKTLAFALPVIELLLQ 170
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
++ AP V+ + PTRELAKQV +F++ G + L++ C+YGGA Y +Q
Sbjct: 171 DKRPRARGR----APRVVCMAPTRELAKQVATEFELTGPS--LSTVCIYGGASYQSQNNA 224
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG-----K 288
+ G+D+++GT GR+ DHI+RGN+ L + +F +LDEAD ML MGF EDV+ + K
Sbjct: 225 FRSGVDILVGTTGRVIDHIDRGNLRLHNCEFLILDEADTMLEMGFREDVQKVFTAMDQVK 284
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348
E K QTLLFSAT+P WVK ++ K++K + ++LV + +AST+V+HI +PC
Sbjct: 285 NESTGKRQTLLFSATIPKWVKDVADKYMKK-AEYVNLVKDSDDQASTDVQHIAIPCHWQG 343
Query: 349 RSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVTLAG 404
R ++ +++ Y+ RTIIF ETK+ ++LA ++ + LHGDI Q QRE T+
Sbjct: 344 RPTLLANLLGVYAKKDSRTIIFAETKKDCNELAVHPEIKTDCQVLHGDIAQEQRETTMKA 403
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR------DVEAYIHRSGRTGRAGNTGV 458
FR G+ L+AT+VAARGLD+N V L+I EPPR DV+ Y+HRSGRTGRAG G+
Sbjct: 404 FREGRLRLLIATDVAARGLDMN-VDLVINSEPPRKMSGMADVDTYVHRSGRTGRAGKKGI 462
Query: 459 AVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKS 517
+ LY R + +++IER+ G KF P D+ KA+ +A + I V S+I F+
Sbjct: 463 CITLYTNRQRDQLNQIERKIGNKFIMKGPPDQEDLIKASAAKALKEIDNVDPSMIEIFQE 522
Query: 518 AAEELLNNSGLSAAELLAKALA 539
A ELL + + LA ALA
Sbjct: 523 KARELLET--MEPEKCLAAALA 542
>gi|428186550|gb|EKX55400.1| hypothetical protein GUITHDRAFT_57670, partial [Guillardia theta
CCMP2712]
Length = 513
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 200/432 (46%), Positives = 279/432 (64%), Gaps = 17/432 (3%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
EKLK+ GI SLFPIQ+ TF+ V++G DL+ RARTG GKTL+F+LP+ E + +
Sbjct: 4 EKLKAGGITSLFPIQSATFNHVMEGKDLIARARTGTGKTLSFILPVHEQMLRLKEEGELD 63
Query: 182 T-GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDV 240
T YGR PS L+L PTRELAKQ+ + ++ A G + +YGG Y Q L+KG+D
Sbjct: 64 TRKYGRTPSCLILSPTRELAKQIAKVLEMVA-ADGFSVLTVYGGVAYAEQGQALRKGVDW 122
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV--EDAN----K 294
V+GTPGR+ D +ERG + L+++++ VLDEADEML +GF + V+ I V E+A
Sbjct: 123 VVGTPGRVIDFMERGQLKLNNVRYFVLDEADEMLNIGFKDAVDKIFKGVMGEEAESKPEH 182
Query: 295 VQTLLFSATLPSWVKHISTKFL-KSDKKTIDLV-GNEKMKASTNVRHIVLPCSSSARSQV 352
VQTLLFSAT+P W+ + K+ K++ +DLV G + + +T + H+ +PC ++R++
Sbjct: 183 VQTLLFSATIPDWIAQTTEKYFDKNNTAHVDLVSGQQGQETATRIEHLCIPCPWNSRART 242
Query: 353 IPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVTLAGFRSG 408
I DI+ CY+ S G+TIIFTETK+ A++LA + LHGDI Q+QRE T FR G
Sbjct: 243 IGDIVLCYAGSHGKTIIFTETKKEANELALDDAIKQDCAVLHGDIAQAQRETTFQAFRDG 302
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK- 467
KF LVAT+VAARGLDI +V L+I C P +D + Y+HRSGRTGRAG +GVAV + PR+
Sbjct: 303 KFRCLVATDVAARGLDIPEVDLVIMCHPTKDADTYVHRSGRTGRAGRSGVAVTFFTPREM 362
Query: 468 SSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
+ IE K ISAPQP +I KA + ++ +V V+P F+ AEE++ + G
Sbjct: 363 HQLRAIEWRIKTKMRQISAPQPEEIVKANARDIKLSVEEVHSDVLPLFEKTAEEMIQDMG 422
Query: 528 LSAAELLAKALA 539
+ A L ALA
Sbjct: 423 ATKA--LCAALA 432
>gi|443708232|gb|ELU03439.1| hypothetical protein CAPTEDRAFT_52524, partial [Capitella teleta]
Length = 707
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 200/452 (44%), Positives = 276/452 (61%), Gaps = 19/452 (4%)
Query: 88 KAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIES--LFPIQAMTFDMVLD 145
KA V EA ++ E E+ A F IS EKLK K + S LFPIQA TFD++++
Sbjct: 94 KAAVNGEAEEKDVEVSEAAMKGAFENFNISAETVEKLKGKLLFSPFLFPIQAQTFDIIME 153
Query: 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205
G D +GRARTG GKT AF +P++E L P ++ AP VLV+LP RELA QV
Sbjct: 154 GVDCIGRARTGTGKTFAFAIPVVEMLNKKPAPTARG-----APRVLVMLPVRELAIQVAG 208
Query: 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265
+F + L C+YGG P + Q L++G+DVV+GTPGRI D I+R +DLS L+
Sbjct: 209 NFKSLA-SRNLAVVCVYGGEPIYTQISALRRGVDVVVGTPGRIMDMIKRNELDLSKLEHV 267
Query: 266 VLDEADEMLRMGFVEDVELILGKVEDANKV----QTLLFSATLPSWVKHISTKFLKSDKK 321
VLDE D ML MGF E+V+ IL + N V QTLLFSAT+P WV+ S K++K + +
Sbjct: 268 VLDEVDRMLDMGFAENVDEILQTRYNENDVESNPQTLLFSATMPDWVQKTSQKYMKKNTR 327
Query: 322 TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA 380
IDLVG E+++ S V+H+ L C+ R+ + D++R YS S GR ++F ETK A LA
Sbjct: 328 NIDLVGRERVRTSITVQHLALQCNYQDRAATVGDVLRVYSGSQGRAMVFCETKRDADDLA 387
Query: 381 DLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEP 436
+ P LHGDI Q +R++ L FR G++ L+ T+VAARGLDI +V L++QC P
Sbjct: 388 -VSPCIGIETHVLHGDIPQEKRQLVLQKFREGRYKCLITTDVAARGLDIPEVDLVVQCCP 446
Query: 437 PRDVEAYIHRSGRTGRAGNTGVAVMLYD-PRKSSVSKIERESGVKFEHISAPQPADIAKA 495
P+DV++YIHRSGRTGRAG G V+ Y + V ++ER +G KF + AP +I A
Sbjct: 447 PKDVDSYIHRSGRTGRAGRQGTCVLFYKYGSEYEVQRVERTAGFKFRRVGAPSRNEIIDA 506
Query: 496 AGVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
A +A + V + + F+ +A+ L+ G
Sbjct: 507 AARDARLVLATVPEETLGHFRESAKLLIEEKG 538
>gi|387191793|gb|AFJ68623.1| hypothetical protein NGATSA_3007300, partial [Nannochloropsis
gaditana CCMP526]
Length = 800
Score = 370 bits (950), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 195/432 (45%), Positives = 268/432 (62%), Gaps = 10/432 (2%)
Query: 115 RISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNG 174
R+S + E L I PIQ TFD + +G D++GR+RTG GKTLAF LPILE++
Sbjct: 186 RVSPGVVESLAGANITHFTPIQRETFDPLFEGRDMIGRSRTGTGKTLAFGLPILEAVAKN 245
Query: 175 PTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
A K GR+PSV++L PTRELAKQ E G +GL +YGG PY Q L
Sbjct: 246 MEAAGTKNARGRSPSVIILAPTRELAKQCDEQLSRIGRPLGLWIRTIYGGVPYERQIRDL 305
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
+ G DV++GTPGRI DH++RG + L+ +K +LDEADEML+MGF ED+E I D +
Sbjct: 306 ESGFDVLVGTPGRIMDHLDRGTLSLNDIKHIILDEADEMLKMGFAEDIEKIFSYF-DVTQ 364
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV--LPCSSSARSQV 352
Q LLFSAT PSWV+ I+ K+LK + +D VG +A+T +RH+ +P S SAR V
Sbjct: 365 AQMLLFSATTPSWVQVIARKYLK-NPINVDAVGGGN-RAATTIRHVAVKVPDSYSARKNV 422
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQREVTLAGFRSG 408
+ D+I +S GGR ++FT+TK A +L+ P A R LHGDI Q QRE+TL FR G
Sbjct: 423 LEDVIAAHSCGGRVMVFTQTKSEADELSTSSPYAAENTRVLHGDITQRQRELTLRQFRDG 482
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DPRK 467
F L+AT+VAARG+DI +V L+IQ P D ++Y+HRSGRTGRAG G +V++Y +P
Sbjct: 483 FFKVLIATDVAARGIDIPEVDLVIQYRPCDDSDSYVHRSGRTGRAGREGTSVIIYSEPEW 542
Query: 468 SSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
+ ++E + +KF+ + P D+ + + + V V+P FK+ A EL+ S
Sbjct: 543 FKLRRLENDINIKFDKVGMPSIEDVVSGLCLAQTDKLKNVDAEVVPYFKAYAAELVAGSD 602
Query: 528 LSAAELLAKALA 539
E+LA+ LA
Sbjct: 603 APVEEMLARCLA 614
>gi|47218719|emb|CAG05691.1| unnamed protein product [Tetraodon nigroviridis]
Length = 727
Score = 368 bits (944), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 193/399 (48%), Positives = 258/399 (64%), Gaps = 18/399 (4%)
Query: 139 TFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE 198
TFD V DG D++ +ARTG GKT +F +P++E L G + A + GRAP VLVL PTRE
Sbjct: 184 TFDPVYDGEDVIAQARTGTGKTFSFAIPLVEKL-QGDSAAPAR---GRAPKVLVLTPTRE 239
Query: 199 LAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI 257
LA QV +DF D+ L+ C YGG Y Q ++ GID+++GTPGRIKDH++ +
Sbjct: 240 LAIQVAKDFKDIIKK---LSIVCFYGGTSYMPQIEAIRNGIDILVGTPGRIKDHLQNHKL 296
Query: 258 DLSSLKFRVLDEADEMLRMGFVEDVELILG----KVEDANKVQTLLFSATLPSWVKHIST 313
DLS LK VLDE D+ML MGF E VE IL K D N QTLLFSAT P WV ++
Sbjct: 297 DLSKLKHVVLDEVDQMLDMGFAEQVEEILALSYKKDADTNP-QTLLFSATCPPWVYDVAK 355
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTET 372
K+++ K +DL+G + KA+T V H+ + C S R+ VI D+IR YS S GR I+F ET
Sbjct: 356 KYMRPSCKHVDLIGKKTQKAATTVEHLAIACHWSQRAAVIGDVIRVYSGSHGRAIVFCET 415
Query: 373 KESASQLA---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQ 429
K+ A++LA + A++LHGDI Q QRE TL GFR G F LVATNVAARGLDI +V
Sbjct: 416 KKEANELALNASIKQNAQSLHGDIPQKQRETTLKGFRKGSFEVLVATNVAARGLDIPEVD 475
Query: 430 LIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQ 488
L++QC PP+DVE+YIHRSGRTGRAG TG+ + Y + + + +E ++G+ F + P
Sbjct: 476 LVVQCSPPKDVESYIHRSGRTGRAGRTGICICFYQRKEEDQLRYVENKAGITFRRVGVPT 535
Query: 489 PADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
DI K++ +A + +S + I F+ AAE+L+ G
Sbjct: 536 ANDIIKSSSKDAVRFLDSISVAAIGYFREAAEKLIEEKG 574
>gi|303275259|ref|XP_003056927.1| DEAD/DEAH box RNA helicase [Micromonas pusilla CCMP1545]
gi|226461279|gb|EEH58572.1| DEAD/DEAH box RNA helicase [Micromonas pusilla CCMP1545]
Length = 803
Score = 364 bits (935), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 188/421 (44%), Positives = 266/421 (63%), Gaps = 16/421 (3%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
PN + F ISV + L+ +GIESLFPIQ+ L+G D+VGRARTG GKTL F LPI
Sbjct: 143 PNHIDNFPISVLTKAALRKRGIESLFPIQSAVLAPALEGRDIVGRARTGTGKTLGFSLPI 202
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
+ESL + P+ A R P +VL PTRELA QV + + + + C+YGG
Sbjct: 203 IESLLSNPSDARN-----RRPRCIVLAPTRELANQVEAEIQLT--VPSMRTVCVYGGVAI 255
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
QE L+ G+D V+GTPGR+ D I+RG++ L +++ VLDEAD+ML +GF EDVE I+
Sbjct: 256 TNQERALRNGVDFVVGTPGRLIDLIQRGSLQLQDIEYCVLDEADQMLAVGFEEDVERIMQ 315
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
++ + QT LFSAT+PSWVK ++ K+LK + IDLVG+ K K + + + CS
Sbjct: 316 EIPEER--QTFLFSATMPSWVKQLTRKYLK-EHVNIDLVGDSKQKVADTIDILSCACSHQ 372
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLA 403
+R+ ++ D++ Y G + I FT+TK A ++ L G R LHGDI Q+QRE TL
Sbjct: 373 SRTMILADLVTVYGKGAKAICFTQTKREADEVTAAL-GRRMATEVLHGDIAQAQRERTLK 431
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
FR +F LVAT+VAARGLDI DV L++ E P D E+++HR GRTGRA G A+ ++
Sbjct: 432 RFRDNRFSVLVATDVAARGLDITDVDLVVHFELPNDTESFVHRCGRTGRANKRGTAIAMF 491
Query: 464 DPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEEL 522
PR++ + I RE+GV F+ I+AP PA++ ++ V+A ++ V D ++P F AE +
Sbjct: 492 TPRENYRLRTIVRETGVTFKSINAPTPAEVMTSSAVQAKHEMSLVDDELLPYFTPTAEAI 551
Query: 523 L 523
L
Sbjct: 552 L 552
>gi|255077858|ref|XP_002502509.1| DEAD/DEAH box RNA helicase [Micromonas sp. RCC299]
gi|226517774|gb|ACO63767.1| DEAD/DEAH box RNA helicase [Micromonas sp. RCC299]
Length = 790
Score = 364 bits (935), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 191/421 (45%), Positives = 271/421 (64%), Gaps = 14/421 (3%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P V F +S + L+ +GIE+LFPIQA + L G D+VGRARTG GKTL F LPI
Sbjct: 132 PMHVDNFPLSDITKAALRKRGIETLFPIQASVLEPALQGRDVVGRARTGTGKTLGFSLPI 191
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
+ESL + P S +T R P +VL PTRELA QV ++ + L + C+YGG
Sbjct: 192 IESLLSNP---SNRTDRSRNPRCIVLAPTRELANQVEKE--IQATVPSLRTLCVYGGVAI 246
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
QE L++G+D+V+GTPGR+ D I+RG+++L +++ VLDEAD+ML +GF EDVE I+
Sbjct: 247 SNQERPLRRGVDIVVGTPGRLIDLIQRGSLNLHDIEYCVLDEADQMLAVGFEEDVERIME 306
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
++ + + QT LFSAT+PSWV I+ K+L +D TIDLVG+++ K + + + CS +
Sbjct: 307 EIPE--QRQTFLFSATMPSWVTRITQKYL-ADHVTIDLVGSQEQKVADTIDVMSCACSHT 363
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLA 403
+R+ ++ D++ Y G + I FT+TK A ++ L G R LHGDI Q+QRE TL
Sbjct: 364 SRTTILADLVTVYGKGAKAICFTQTKREADEVTAAL-GRRMATEVLHGDIAQAQRERTLK 422
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
FR G+F LVAT+VAARGLDI DV L++ E P D E+++HR GRTGRA G A+ +Y
Sbjct: 423 RFRDGRFSVLVATDVAARGLDITDVDLVVHYELPHDTESFVHRCGRTGRANKKGAAIAMY 482
Query: 464 DPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEEL 522
PR KS + I RE+GVKF I+ P A++ ++ +A+ I V D ++P F AE++
Sbjct: 483 TPREKSRIRSIVRETGVKFRVINPPTAAEVMTSSAEQASIEIDLVDDELLPYFTPTAEKI 542
Query: 523 L 523
L
Sbjct: 543 L 543
>gi|163916596|gb|AAI57756.1| LOC734085 protein [Xenopus (Silurana) tropicalis]
Length = 758
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 187/439 (42%), Positives = 272/439 (61%), Gaps = 15/439 (3%)
Query: 98 EEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQ 157
EE+E + + S+F IS + L++KG+ LFPIQ+ TF G D+V +ARTG
Sbjct: 168 EEEEINQEKIDGDFSKFPISKDTIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGT 227
Query: 158 GKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLT 217
GKT +F +P++E L ++ GRAP V++L PTRELA Q+ + + L
Sbjct: 228 GKTFSFAIPLVERLNEDQQPLAR----GRAPRVIILTPTRELAIQITNE--IRSITKKLK 281
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
CC YGG PY Q F +K+G D ++GTPGR++D ++ +DL+ LK VLDE D M MG
Sbjct: 282 VCCFYGGTPYQQQVFSIKEGFDFLVGTPGRVRDLVQNYRLDLTVLKHVVLDEVDMMFDMG 341
Query: 278 FVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAS 334
F E VE IL K + QTLLFSAT P W+ +++ K++K + IDLVG+ KA+
Sbjct: 342 FSEQVEEILSVRYKPDPEENPQTLLFSATCPDWMYNVAKKYMKKQFEKIDLVGHRSQKAA 401
Query: 335 TNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA----DLLPGARAL 389
V H+ + C+ S ++ V+ DI++ YS S G++IIF ++K A +LA L A+ L
Sbjct: 402 ITVEHLAIECTRSQKAAVLGDIVQVYSGSHGKSIIFCDSKLEAHELATNCGSLKQSAKPL 461
Query: 390 HGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 449
HGD+QQ +REV L GFR G F LVATNVAARGLDI +V L++ P++ +AY+HRSGR
Sbjct: 462 HGDLQQKEREVILKGFRQGSFEVLVATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGR 521
Query: 450 TGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVS 508
TGRAG TG+ + LY+PR + + +ER +G+ F+ + P ++AK++ +A +++ V
Sbjct: 522 TGRAGRTGICISLYEPRERHYLRNVERSTGITFKRVGIPSLLNVAKSSSADAIKSLDSVP 581
Query: 509 DSVIPAFKSAAEELLNNSG 527
VI FK A+EL+ G
Sbjct: 582 ADVIEHFKEYAQELIEKKG 600
>gi|113931550|ref|NP_001039224.1| nucleolar RNA helicase 2 [Xenopus (Silurana) tropicalis]
gi|89272468|emb|CAJ82454.1| novel GUCT (NUC152) domain containing DEAD/DEAH box helicase
[Xenopus (Silurana) tropicalis]
Length = 755
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 187/439 (42%), Positives = 272/439 (61%), Gaps = 15/439 (3%)
Query: 98 EEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQ 157
EE+E + + S+F IS + L++KG+ LFPIQ+ TF G D+V +ARTG
Sbjct: 168 EEEEINQEKIDGDFSKFPISKDTIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGT 227
Query: 158 GKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLT 217
GKT +F +P++E L ++ GRAP V++L PTRELA Q+ + + L
Sbjct: 228 GKTFSFAIPLVERLNEDQQPLAR----GRAPRVIILTPTRELAIQITNE--IRSITKKLK 281
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
CC YGG PY Q F +K+G D ++GTPGR++D ++ +DL+ LK VLDE D M MG
Sbjct: 282 VCCFYGGTPYQQQVFSIKEGFDFLVGTPGRVRDLVQNYRLDLTVLKHVVLDEVDMMFDMG 341
Query: 278 FVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAS 334
F E VE IL K + QTLLFSAT P W+ +++ K++K + IDLVG+ KA+
Sbjct: 342 FSEQVEEILSVRYKPDPEENPQTLLFSATCPDWMYNVAKKYMKKQFEKIDLVGHRSQKAA 401
Query: 335 TNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA----DLLPGARAL 389
V H+ + C+ S ++ V+ DI++ YS S G++IIF ++K A +LA L A+ L
Sbjct: 402 ITVEHLAIECTRSQKAAVLGDIVQVYSGSHGKSIIFCDSKLEAHELATNCGSLKQSAKPL 461
Query: 390 HGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 449
HGD+QQ +REV L GFR G F LVATNVAARGLDI +V L++ P++ +AY+HRSGR
Sbjct: 462 HGDLQQKEREVILKGFRQGSFEVLVATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGR 521
Query: 450 TGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVS 508
TGRAG TG+ + LY+PR + + +ER +G+ F+ + P ++AK++ +A +++ V
Sbjct: 522 TGRAGRTGICISLYEPRERHYLRNVERSTGITFKRVGIPSLLNVAKSSSADAIKSLDSVP 581
Query: 509 DSVIPAFKSAAEELLNNSG 527
VI FK A+EL+ G
Sbjct: 582 ADVIEHFKEYAQELIEKKG 600
>gi|157863878|ref|XP_001687490.1| putative nucleolar RNA helicase II [Leishmania major strain
Friedlin]
gi|68223701|emb|CAJ01930.1| putative nucleolar RNA helicase II [Leishmania major strain
Friedlin]
Length = 674
Score = 362 bits (928), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 206/504 (40%), Positives = 304/504 (60%), Gaps = 36/504 (7%)
Query: 79 SEKEKKKKKKAKVEPEAGVEEQERGESEHPN--------AVSRFRISVPLREKLKSKGIE 130
+EK K+ + +KV + E+ + E PN S F ++ + + L+S+GIE
Sbjct: 48 AEKRKRTEGSSKVSATSATAPAEKKDEEVPNNGCAATARPFSEFEMNPIVVKALQSRGIE 107
Query: 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSV 190
S+FP+QA+TF+ ++ +D++ +ARTG GKTLAF +PI+E L P+ ++ GR P+
Sbjct: 108 SMFPVQALTFNAIMRNTDVLVQARTGSGKTLAFGIPIVERLLKLPSHLTR----GRGPAA 163
Query: 191 LVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIK 249
++ PTRELA QV DV G + GL LYGG Y QE L+ G+D+V+ TPGR K
Sbjct: 164 VIFCPTRELAIQVQ---DVLCGISCGLVVTALYGGVAYANQERVLRSGVDIVVATPGRAK 220
Query: 250 DHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV--------QTLLFS 301
D +E+G + + LDEAD ML +GF +D+EL+L +V + N QTLLFS
Sbjct: 221 DFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNGSVGAERPAHQTLLFS 280
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
AT+P WV S F+ DK+ ID+VG E ++ ++ ++ C+ S S ++ D+I+ YS
Sbjct: 281 ATVPEWVHTCS--FIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEISSMLADLIKVYS 338
Query: 362 SG-GRTIIFTETKESASQLA--DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
GRT++FT TK+ L+ + ++ LHGD+QQ QRE T+ FR KF L+AT+V
Sbjct: 339 GAHGRTLVFTNTKKDCHDLSINNTKLDSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDV 398
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS-VSKIERES 477
AARGLD+ V L+IQC PP D++A+IHR+GRTGRAG GV V+LY PR+ V +IER +
Sbjct: 399 AARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLLYQPREEYVVERIERHA 458
Query: 478 GVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKA 537
+KF+ + AP +I KA +AAE + +V F A ELL ++ E+LA A
Sbjct: 459 KMKFDVLPAPTREEILKAVARDAAEDLARVERRATDLFMEQAAELLKDA--DPVEILASA 516
Query: 538 LAKAVVSAFLFSSSSNSLSLTSGT 561
L AV+S ++S+ + L +GT
Sbjct: 517 L--AVMSG--YTSNITARGLITGT 536
>gi|403335713|gb|EJY67037.1| DEAD/DEAH box helicase family protein [Oxytricha trifallax]
Length = 972
Score = 361 bits (926), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 195/452 (43%), Positives = 283/452 (62%), Gaps = 18/452 (3%)
Query: 118 VPLR--EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+P R +KLKS+GI SLFPIQ TF + + D++ R TG GKTLAF LPI+E L
Sbjct: 161 IPQRTVDKLKSRGIISLFPIQQQTFYPIYNREDVIARDLTGSGKTLAFGLPIIEYL---- 216
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ +K G + ++L L PTRELA QV + + G + S +YGG P Q L
Sbjct: 217 -RKNKFLGQRKVQAIL-LAPTRELAIQVQNELSQLKHGDMEFKSITVYGGVPIDDQARDL 274
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
K G+D+++GT GR+KDHIERGNID SS+K VLDEAD ML +GF +D+E I+ ++ +
Sbjct: 275 KYGVDIIVGTAGRVKDHIERGNIDFSSVKSFVLDEADRMLDLGFKDDIEWIMSQITRQCQ 334
Query: 295 --VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
VQ LFSAT+P WVK+++ ++LK + + +DL N K + +V+H+ + C +
Sbjct: 335 FDVQKCLFSATIPLWVKNVARQYLKPNYRLVDLAQNLTNKTAKSVQHLSICCPEQNKMST 394
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVTLAGFRSGK 409
+ D++ CY GR I+FT+TK A+ L + +HGDI Q+QREVTL FR GK
Sbjct: 395 LADLLICYGGDGRAIVFTQTKVDANALILTDKIKQDIEVMHGDIPQNQREVTLKRFRDGK 454
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KS 468
F LVAT+VA+RGLDI +V L+IQ EPP +VE YIHRSGRT RAG GV + Y + +
Sbjct: 455 FSVLVATDVASRGLDIPNVDLVIQVEPPNEVETYIHRSGRTARAGKMGVCITFYTKKSQY 514
Query: 469 SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGL 528
+ +IE ++G+KF++I P D+ +A+ + + QV+D VIP F AA++L++ G
Sbjct: 515 MIQQIESQAGIKFKNIGIPSAQDVIRASSKLMLKNLDQVNDQVIPYFTEAAKDLIDMCGG 574
Query: 529 SAAELLAKALAKAVVSAFLFSSSSNSLSLTSG 560
+ + L KAL A +S + + ++ + SL +G
Sbjct: 575 NQEKALCKAL--AYISGY-YKTAFQTRSLITG 603
>gi|325183265|emb|CCA17723.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
gi|325183911|emb|CCA18369.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 660
Score = 360 bits (925), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 199/482 (41%), Positives = 281/482 (58%), Gaps = 25/482 (5%)
Query: 92 EPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVG 151
EP A +E ++ F I ++ LK GI +LFPIQAMTFD ++DG++L+G
Sbjct: 78 EPAAADAVEETCTKSSNPSLDDFAICAQTKKNLKKHGIANLFPIQAMTFDKIMDGNNLIG 137
Query: 152 RARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211
RARTG GKTLAF LP++E L K RAP V+ + PTRELA+QV +F+
Sbjct: 138 RARTGMGKTLAFALPVVEKLLQSKIKPVP----NRAPRVICVTPTRELARQVTTEFEKLD 193
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
L + C+YGG PY Q + G D+VIGT GRI DHI+RGN+ ++ +F +LDEAD
Sbjct: 194 --TTLNTVCIYGGTPYQQQNAAFRSGTDIVIGTTGRIMDHIDRGNLRFANCEFLILDEAD 251
Query: 272 EMLRMGFVEDVELILGKVEDAN-KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK 330
ML MGF ED++ I + + K Q LLFSAT+P W+ I+ +++ + ++LV +
Sbjct: 252 TMLEMGFREDIQRIFDATQKSGVKPQILLFSATIPKWLHEIADRYMDKKYEFVNLVQDSD 311
Query: 331 MKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGA 386
+AS +V+H+ +PC +R ++ ++ Y RTIIF ETK+ ++L+ ++
Sbjct: 312 DQASLDVQHVAIPCHWQSRPTLLASLLGVYGKQNARTIIFAETKKDCNELSVHPEIKQDC 371
Query: 387 RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR------DV 440
LHGDI Q+QRE T+ FR G+ L+AT+VAARGLD+N V L+I EPPR DV
Sbjct: 372 HVLHGDIAQAQRETTMKAFRDGQIRLLIATDVAARGLDMN-VDLVINSEPPRKASGYADV 430
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVE 499
+ Y+HRSGRTGRAG GV + LY PR K + IER+ G KF P ++ K + +
Sbjct: 431 DTYVHRSGRTGRAGKKGVCITLYTPRQKELLDLIERKIGNKFIMRDQPSQEELIKVSAEK 490
Query: 500 AAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVVSAFLFSSSSNSLSLTS 559
A +++ QV +I F+ AEE L N KALA A+ ++ SL S
Sbjct: 491 AFKSMDQVDPVMIAIFEEKAEEYLENHEPK------KALAVALACITGHATPPRPHSLMS 544
Query: 560 GT 561
GT
Sbjct: 545 GT 546
>gi|49119283|gb|AAH73332.1| LOC398189 protein [Xenopus laevis]
Length = 727
Score = 360 bits (924), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 185/439 (42%), Positives = 272/439 (61%), Gaps = 15/439 (3%)
Query: 98 EEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQ 157
EEQE + + S+F +S + L++KG+ LFPIQ+ TF G D+V +ARTG
Sbjct: 136 EEQEINQEKIDGDFSKFPLSKETIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGT 195
Query: 158 GKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLT 217
GKT +F +P++E L ++ GRAP V++L PTRELA Q+ + + L
Sbjct: 196 GKTFSFAIPLVEKLNEDQQPLAR----GRAPRVIILTPTRELAIQITNE--IRSITKKLK 249
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
C YGG PY Q F +K GID ++GTPGR++D ++ +DL++LK VLDE D M MG
Sbjct: 250 VSCFYGGTPYQQQVFAIKDGIDFLVGTPGRVRDLVQNYRLDLTTLKHVVLDEVDMMFDMG 309
Query: 278 FVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAS 334
F E VE IL K + QTLLFSAT P W+ +++ K+++ + IDL+G+ KA+
Sbjct: 310 FSEQVEEILSVRYKADPEENPQTLLFSATCPDWMYNMAKKYMRKQFEKIDLIGHRSQKAA 369
Query: 335 TNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA----DLLPGARAL 389
T V H+ + C+ S ++ V+ D+++ YS S G+TIIF ++K A LA L A++L
Sbjct: 370 TTVEHLAIECTRSQKAAVLGDLVQVYSGSHGKTIIFCDSKLEAHTLATSCGSLKQSAKSL 429
Query: 390 HGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 449
HGD+QQ +REV L GFR G F L+ATNVAARGLDI +V L++ P++ +AY+HRSGR
Sbjct: 430 HGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGR 489
Query: 450 TGRAGNTGVAVMLYDP-RKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVS 508
TGRAG TGV + LY+P + + +ER +G+ F+ + P ++AK++ +A +++ V
Sbjct: 490 TGRAGRTGVCISLYEPWERHYLRNVERSTGITFKRVGVPSLLNVAKSSSADAIKSLDTVP 549
Query: 509 DSVIPAFKSAAEELLNNSG 527
VI FK A+EL+ G
Sbjct: 550 ADVIEHFKEYAQELIEQKG 568
>gi|168000743|ref|XP_001753075.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695774|gb|EDQ82116.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 793
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 195/424 (45%), Positives = 267/424 (62%), Gaps = 13/424 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A+SR I + + L +GI LFPIQ + + G DL+GRA+TG GKTLAF +PI+
Sbjct: 138 AISRLGIPDAVADALAKRGITQLFPIQRAVLEPAMQGRDLIGRAKTGTGKTLAFGIPIIN 197
Query: 170 SLT--NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
++ N + ++++G RAP LVL PTRELAKQV +F A L++ C+YGG
Sbjct: 198 NIIRENEENRVARRSG--RAPRALVLAPTRELAKQVEREF--MESAPMLSTICVYGGVAI 253
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
+Q+ L +G+D+ +GTPGRI D I RG++ L ++F VLDEAD+ML +GF EDVE IL
Sbjct: 254 SSQQRLLTRGVDIAVGTPGRIIDLINRGSLRLQEVRFLVLDEADQMLAVGFEEDVEQILE 313
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
++ N+ Q++LFSAT+P+WVK +S K+L D TIDLVG K + ++ +
Sbjct: 314 QM--PNQRQSMLFSATMPTWVKKLSRKYLH-DALTIDLVGESDEKLADRIKLYAVATVPQ 370
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAG 404
A+ ++ D+I Y GG+TI+FT+TK A +A + G ALHGDI QSQRE TL
Sbjct: 371 AKRSILNDLIAVYGKGGKTIVFTQTKRDADDVATAMARTLGCEALHGDISQSQREKTLNA 430
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
FR G F LVAT+VAARGLDI +V L+I E P D E ++HRSGRTGRAG G A+++Y
Sbjct: 431 FREGNFSVLVATDVAARGLDIPNVDLVIHYEIPNDPETFVHRSGRTGRAGKDGTAILMYS 490
Query: 465 PRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELL 523
R++ + IER+ G KF ISAP+ D+ KA+ A + I +V V F AEELL
Sbjct: 491 DRQTRTMRLIERDVGCKFTKISAPRVEDVLKASTESATDVIKRVHPEVAEVFMPTAEELL 550
Query: 524 NNSG 527
G
Sbjct: 551 KEQG 554
>gi|147899364|ref|NP_001082035.1| RNA helicase II/Gu [Xenopus laevis]
gi|16975508|gb|AAG22819.2|AF302423_1 RNA helicase II/Gu [Xenopus laevis]
Length = 759
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 184/439 (41%), Positives = 272/439 (61%), Gaps = 15/439 (3%)
Query: 98 EEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQ 157
EEQ+ + + S+F +S + L++KG+ LFPIQ+ TF G D+V +ARTG
Sbjct: 168 EEQDINQEKIDGDFSKFPLSKETIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGT 227
Query: 158 GKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLT 217
GKT +F +P++E L ++ GRAP V++L PTRELA Q+ + + L
Sbjct: 228 GKTFSFAIPLVEKLNEDQQPLAR----GRAPRVIILTPTRELAIQITNE--IRSITKKLK 281
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
C YGG PY Q F +K GID ++GTPGR++D ++ +DL++LK VLDE D M MG
Sbjct: 282 VSCFYGGTPYQQQVFAIKDGIDFLVGTPGRVRDLVQNYRLDLTTLKHVVLDEVDMMFDMG 341
Query: 278 FVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAS 334
F E VE IL K + QTLLFSAT P W+ +++ K+++ + IDL+G+ KA+
Sbjct: 342 FSEQVEEILSVRYKADPEENPQTLLFSATCPDWMYNMAKKYMRKQFEKIDLIGHRSQKAA 401
Query: 335 TNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA----DLLPGARAL 389
T V H+ + C+ S ++ V+ D+++ YS S G+TIIF ++K A LA L A++L
Sbjct: 402 TTVEHLAIECTRSQKAAVLGDLVQVYSGSHGKTIIFCDSKLEAHTLATSCGSLKQSAKSL 461
Query: 390 HGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 449
HGD+QQ +REV L GFR G F L+ATNVAARGLDI +V L++ P++ +AY+HRSGR
Sbjct: 462 HGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGR 521
Query: 450 TGRAGNTGVAVMLYDP-RKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVS 508
TGRAG TGV + LY+P + + +ER +G+ F+ + P ++AK++ +A +++ V
Sbjct: 522 TGRAGRTGVCISLYEPWERHYLRNVERSTGITFKRVGVPSLLNVAKSSSADAIKSLDTVP 581
Query: 509 DSVIPAFKSAAEELLNNSG 527
VI FK A+EL+ G
Sbjct: 582 ADVIEHFKEYAQELIEQKG 600
>gi|401414811|ref|XP_003871902.1| putative nucleolar RNA helicase II [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488123|emb|CBZ23369.1| putative nucleolar RNA helicase II [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 684
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 206/504 (40%), Positives = 302/504 (59%), Gaps = 36/504 (7%)
Query: 79 SEKEKKKKKKAKVEPEAGVEEQERGESEHPN--------AVSRFRISVPLREKLKSKGIE 130
+EK K+ + +KV + E + E PN S F ++ + + L+S+GIE
Sbjct: 48 AEKRKRPEGNSKVAATSATTPAEEKDEEVPNNGCAATARPFSEFEMNPTVVKALQSRGIE 107
Query: 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSV 190
S+FP+QA+TF+ ++ +D++ +ARTG GKTLAF +PI+E L P+ + GR P+
Sbjct: 108 SMFPVQALTFNAIMRSTDVLVQARTGSGKTLAFGIPIVERLLKLPSHLIR----GRGPAA 163
Query: 191 LVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIK 249
++ PTRELA QV DV G + GL LYGG Y QE L+ G+D+V+ TPGR K
Sbjct: 164 VIFCPTRELAIQVQ---DVLCGISCGLVVTALYGGVAYANQERVLRSGVDIVVATPGRAK 220
Query: 250 DHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV--------QTLLFS 301
D +E+G + + LDEAD ML +GF +D+EL+L +V + N QTLLFS
Sbjct: 221 DFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNGSVGAEKPVHQTLLFS 280
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
AT+P WV S F+ DK+ ID+VG E ++ ++ ++ C+ S S ++ D+I+ YS
Sbjct: 281 ATVPEWVHTCS--FIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEISSMLADLIKVYS 338
Query: 362 SG-GRTIIFTETKESASQLA--DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
GRT++FT TK+ L+ + ++ LHGD+QQ QRE T+ FR KF L+AT+V
Sbjct: 339 GAHGRTLVFTNTKKDCHDLSINNTKLDSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDV 398
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS-VSKIERES 477
AARGLD+ V L+IQC PP D++A+IHR+GRTGRAG GV V+LY PR+ V +IER +
Sbjct: 399 AARGLDLPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVLLYQPREEYVVERIERHA 458
Query: 478 GVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKA 537
+KF+ + AP +I KA +AAE + +V F A ELL ++ E+LA A
Sbjct: 459 KMKFDVLPAPTREEILKAVARDAAEDLARVERRATNLFMDQAAELLKDA--DPVEILASA 516
Query: 538 LAKAVVSAFLFSSSSNSLSLTSGT 561
L AV+S ++S+ + L +GT
Sbjct: 517 L--AVMSG--YTSNITTRGLITGT 536
>gi|398010006|ref|XP_003858201.1| nucleolar RNA helicase II, putative [Leishmania donovani]
gi|322496407|emb|CBZ31477.1| nucleolar RNA helicase II, putative [Leishmania donovani]
Length = 678
Score = 359 bits (921), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 206/506 (40%), Positives = 303/506 (59%), Gaps = 36/506 (7%)
Query: 77 LKSEKEKKKKKKAKVEPEAGVEEQERGESEHPN--------AVSRFRISVPLREKLKSKG 128
+ +EK K+ + KV + E + E PN S F ++ + + L+S+G
Sbjct: 46 VAAEKRKRTEGSCKVAVTSATAPAEEKDEEVPNNGCAATARPFSEFEMNPIVVKALQSRG 105
Query: 129 IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188
IES+FP+QA+TF+ ++ +D++ +ARTG GKTLAF +PI+E L P+ ++ GR P
Sbjct: 106 IESMFPVQALTFNAIMRNTDVLVQARTGSGKTLAFGIPIVERLLKLPSHFTR----GRGP 161
Query: 189 SVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGR 247
+ ++ PTRELA QV DV G + GL LYGG Y QE L+ G+D+V+ TPGR
Sbjct: 162 AAVIFCPTRELAIQVQ---DVLCGISCGLVVTALYGGVAYANQERVLRSGVDIVVATPGR 218
Query: 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV--------QTLL 299
KD +E+G + + LDEAD ML +GF +D+EL+L +V + N QTLL
Sbjct: 219 AKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNGSVGAERPVHQTLL 278
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSAT+P WV S F+ DK+ ID+VG E ++ ++ ++ C+ S S ++ D+I+
Sbjct: 279 FSATVPEWVHTCS--FIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEISSMLADLIKV 336
Query: 360 YSSG-GRTIIFTETKESASQLA--DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
YS GRT++FT TK+ L+ + ++ LHGD+QQ QRE T+ FR KF L+AT
Sbjct: 337 YSGAHGRTLVFTNTKKDCHDLSINNTKLDSQCLHGDMQQEQRESTMKSFRDNKFSVLIAT 396
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS-VSKIER 475
+VAARGLD+ V L+IQC PP D++A+IHR+GRTGRAG GV V+LY PR+ V +IER
Sbjct: 397 DVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLLYQPREEYVVERIER 456
Query: 476 ESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLA 535
+ +KF+ + AP +I KA +AAE + +V F A ELL ++ E+LA
Sbjct: 457 HAKMKFDVLPAPTREEILKAVARDAAEDLARVERRATDLFMDQAAELLKDA--DPVEILA 514
Query: 536 KALAKAVVSAFLFSSSSNSLSLTSGT 561
AL AV+S ++S+ + L +GT
Sbjct: 515 SAL--AVMSG--YTSNITTRGLITGT 536
>gi|339896857|ref|XP_001462984.2| putative nucleolar RNA helicase II [Leishmania infantum JPCM5]
gi|321398908|emb|CAM65330.2| putative nucleolar RNA helicase II [Leishmania infantum JPCM5]
Length = 678
Score = 359 bits (921), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 206/503 (40%), Positives = 301/503 (59%), Gaps = 36/503 (7%)
Query: 80 EKEKKKKKKAKVEPEAGVEEQERGESEHPN--------AVSRFRISVPLREKLKSKGIES 131
EK K+ + KV + E + E PN S F ++ + + L+S+GIES
Sbjct: 49 EKRKRTEGSCKVAVTSATAPAEEKDEEVPNNGCAATARPFSEFEMNPIVVKALQSRGIES 108
Query: 132 LFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVL 191
+FP+QA+TF+ ++ +D++ +ARTG GKTLAF +PI+E L P+ ++ GR P+ +
Sbjct: 109 MFPVQALTFNAIMRNTDVLVQARTGSGKTLAFGIPIVERLLKLPSHFTR----GRGPAAV 164
Query: 192 VLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKD 250
+ PTRELA QV DV G + GL LYGG Y QE L+ G+D+V+ TPGR KD
Sbjct: 165 IFCPTRELAIQVQ---DVLCGISCGLVVTALYGGVAYANQERVLRSGVDIVVATPGRAKD 221
Query: 251 HIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV--------QTLLFSA 302
+E+G + + LDEAD ML +GF +D+EL+L +V + N QTLLFSA
Sbjct: 222 FLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNGSVGAERPVHQTLLFSA 281
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P WV S F+ DK+ ID+VG E ++ ++ ++ C+ S S ++ D+I+ YS
Sbjct: 282 TVPEWVHTCS--FIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEISSMLADLIKVYSG 339
Query: 363 G-GRTIIFTETKESASQLA--DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
GRT++FT TK+ L+ + ++ LHGD+QQ QRE T+ FR KF L+AT+VA
Sbjct: 340 AHGRTLVFTNTKKDCHDLSINNTKLDSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVA 399
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS-VSKIERESG 478
ARGLD+ V L+IQC PP D++A+IHR+GRTGRAG GV V+LY PR+ V +IER +
Sbjct: 400 ARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLLYQPREEYVVERIERHAK 459
Query: 479 VKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKAL 538
+KF+ + AP +I KA +AAE + +V F A ELL ++ E+LA AL
Sbjct: 460 MKFDVLPAPTREEILKAVARDAAEDLARVERRATDLFMDQAAELLKDA--DPVEILASAL 517
Query: 539 AKAVVSAFLFSSSSNSLSLTSGT 561
AV+S ++S+ + L +GT
Sbjct: 518 --AVMSG--YTSNITTRGLITGT 536
>gi|154332025|ref|XP_001561829.1| putative nucleolar RNA helicase II [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134059150|emb|CAM36848.1| putative nucleolar RNA helicase II [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 689
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 213/541 (39%), Positives = 319/541 (58%), Gaps = 37/541 (6%)
Query: 43 KSKKKESSKKRKESEIEEEEERSETSSELGEPVN-LKSEKEKKKKKKAKVEPEAGVEEQE 101
++K ++K S+ +E + S+T ++ + N + +EK ++ + +KV A E
Sbjct: 11 EAKSHHTTKFTNSSDDDEPVKVSKTHTKASDHHNDIAAEKRQRTDESSKVAAAAAATRAE 70
Query: 102 RGESEHPN--------AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRA 153
+ E PN S F ++ + + L+S+GIES+FP+QA+TF+ ++ +D++ +A
Sbjct: 71 VKDGEMPNNGCAATARPFSEFEMNPIVVKALQSRGIESMFPVQALTFNAIMRNADVLVQA 130
Query: 154 RTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG- 212
RTG GKTLAF +PI+E L K GR P+ ++ PTRELA QV DV G
Sbjct: 131 RTGSGKTLAFGIPIVERLL----KLQSHLTRGRGPAAVIFCPTRELAIQVQ---DVLCGI 183
Query: 213 AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADE 272
+ GL LYGG Y QE L+ G+D+V+ TPGR KD +E+G + + LDEAD
Sbjct: 184 SCGLIVTALYGGVAYANQERVLRSGVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADH 243
Query: 273 MLRMGFVEDVELILGKVEDANKV--------QTLLFSATLPSWVKHISTKFLKSDKKTID 324
ML +GF +D+EL+L +V + N QTLLFSAT+P WV S F+ DK+ ID
Sbjct: 244 MLDIGFKDDIELLLSQVAEQNGSTSAEKTVHQTLLFSATVPEWVHTCS--FIAKDKEFID 301
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLA--D 381
+VG E ++ ++ ++ C+ S S ++ D+I+ YS GRT++FT TK+ L+ +
Sbjct: 302 MVGKEAVRTASTIKFYRRKCNFSEISSMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINN 361
Query: 382 LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVE 441
++ LHGD+QQ QRE T+ FR KF L+AT+VAARGLD+ V L+IQC PP D++
Sbjct: 362 TKLDSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDID 421
Query: 442 AYIHRSGRTGRAGNTGVAVMLYDPRKSS-VSKIERESGVKFEHISAPQPADIAKAAGVEA 500
A+IHR+GRTGRAG GV V+LY PR+ V +IER + +KF+ + AP +I KA +A
Sbjct: 422 AFIHRAGRTGRAGRKGVCVLLYQPREEYVVERIERHAKMKFDVLPAPTREEILKAVARDA 481
Query: 501 AETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVVSAFLFSSSSNSLSLTSG 560
AE + +V F A ELL ++ E+LA AL AV+S ++S+ + L +G
Sbjct: 482 AEDLARVERRATNLFMEQAAELLKDA--DPVEILASAL--AVMSG--YTSNITTRGLITG 535
Query: 561 T 561
T
Sbjct: 536 T 536
>gi|299115354|emb|CBN74178.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 923
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 189/425 (44%), Positives = 268/425 (63%), Gaps = 11/425 (2%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKT- 182
LK++GIE P+QA+T+D +L G D++G++RTG GKT+AF LP+++ L ++T
Sbjct: 271 LKARGIEKFTPVQAITYDHILSGRDIIGKSRTGTGKTIAFGLPVIQHLGRFAEDHQQRTY 330
Query: 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
GR+P LV+ PTRELA+QV+ + + G GL + +GGA Y Q L G+D+++
Sbjct: 331 QRGRSPRFLVVCPTRELARQVYGELETLGSTFGLKADVFHGGAAYGPQMRSLSDGLDILV 390
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
TPGRI DH++RG +DLS ++ VLDEADEML MGF +D+E I V D + Q LLFSA
Sbjct: 391 ATPGRIMDHLQRGALDLSDVRHAVLDEADEMLNMGFADDIETIFSYV-DVKECQVLLFSA 449
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+PSWV++I+ K+ ++ T+D VG K +T V+H+ + SS RS ++ DII Y
Sbjct: 450 TVPSWVRNIANKY-TANPLTVDAVGKHVNKLATTVKHLSIEVSSRHRSSMLEDIITYYGK 508
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G I+FT +K +LAD ++ LHGDI Q QR+ T+ FR+ F LVAT+V
Sbjct: 509 GSHAIVFTNSKAECDELADGQTFKTLTSQVLHGDISQHQRDQTIKAFRAKGFQVLVATDV 568
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK-SSVSKIER-- 475
AARG+D++D+ L++Q PPRD ++Y+HRSGRTGRAG GVAV LY + + KIE+
Sbjct: 569 AARGIDVSDIDLVVQYRPPRDPDSYVHRSGRTGRAGRPGVAVTLYAENEIRDIRKIEQGV 628
Query: 476 ESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAE-LL 534
G +FE + P + AG A E I VSD ++ F+ +A+ELL E LL
Sbjct: 629 GQGFRFERGAVPSAEQVMSLAGTVAREQIKGVSDDMVDFFRESAQELLAEEESEDKELLL 688
Query: 535 AKALA 539
AK LA
Sbjct: 689 AKCLA 693
>gi|356534927|ref|XP_003536002.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 736
Score = 357 bits (916), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 191/433 (44%), Positives = 279/433 (64%), Gaps = 10/433 (2%)
Query: 99 EQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQG 158
E + S+H +S+ + PL L+ +GI SLFPIQ L+G D++ RA+TG G
Sbjct: 82 EPDTNVSDHELDISKLGLPSPLVHSLQKRGIISLFPIQRAVLVPALEGKDIIARAKTGTG 141
Query: 159 KTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTS 218
KTLAF +PIL+ LTN ++ + GR P LVL PTRELAKQV ++ + A L +
Sbjct: 142 KTLAFGIPILKGLTNDDEQSPHRRS-GRLPKALVLAPTRELAKQVEKE--IQESAPYLKT 198
Query: 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF 278
C+YGG Y Q+ L +G+DVV+GTPGRI D + ++ LS +++ VLDEAD+ML +GF
Sbjct: 199 VCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLVNGNSLKLSEVQYLVLDEADQMLAVGF 258
Query: 279 VEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR 338
EDVE+IL KV + QT+LFSAT+P WVK +S K+L ++ TIDLVG ++ K + ++
Sbjct: 259 EEDVEVILDKV--PTQRQTMLFSATMPGWVKKLSRKYL-NNPLTIDLVGEQEEKLAEGIK 315
Query: 339 HIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQ 395
L +++++ V+ D+I Y+ GG+TI+FT+TK+ A +++ L + ALHGDI Q
Sbjct: 316 LYALLATATSKRTVLSDLITVYAKGGKTIVFTQTKKDADEVSMALTSSIASEALHGDISQ 375
Query: 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN 455
QRE TL GFR GKF LVAT+VAARGLDI +V L+I E P D E ++HRSGRTGRAG
Sbjct: 376 HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDAETFVHRSGRTGRAGK 435
Query: 456 TGVAVMLY-DPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPA 514
G A+++Y ++ +V +ER+ G KFE +S P +I +++ + T+ +V +
Sbjct: 436 EGTAILMYTSSQRRTVRSLERDVGSKFEFVSPPAVEEILESSAEQVVATLNRVHPESVEF 495
Query: 515 FKSAAEELLNNSG 527
F + A++L+ G
Sbjct: 496 FTATAQKLVEEQG 508
>gi|356574052|ref|XP_003555166.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 736
Score = 357 bits (916), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 192/433 (44%), Positives = 278/433 (64%), Gaps = 10/433 (2%)
Query: 99 EQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQG 158
E + S+H +S+ + PL L+ +GI SLFPIQ L+G D++ RA+TG G
Sbjct: 84 EPDTNVSDHELDISKLGLPSPLVHSLQQRGITSLFPIQRAVLVPALEGKDIIARAKTGTG 143
Query: 159 KTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTS 218
KTLAF +PIL+ LT+ ++S + GR P LVL PTRELAKQV ++ + A L +
Sbjct: 144 KTLAFGIPILKGLTDDDEQSSHRRS-GRLPKALVLAPTRELAKQVEKE--IQESAPYLKT 200
Query: 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF 278
C+YGG Y Q+ L G+DVV+GTPGRI D + ++ LS +++ VLDEAD ML +GF
Sbjct: 201 VCVYGGVSYVTQQGALSHGVDVVVGTPGRIIDLVNGNSLKLSEVQYLVLDEADRMLAVGF 260
Query: 279 VEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR 338
EDVE+IL KV + QT+LFSAT+P WVK +S K+L ++ TIDLVG ++ K + ++
Sbjct: 261 EEDVEVILDKV--PAQRQTMLFSATMPGWVKKLSRKYL-NNPLTIDLVGEQEEKLAEGIK 317
Query: 339 HIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQ 395
L ++S++ V+ D+I Y+ GG+TI+FT+TK+ A +++ L + ALHGDI Q
Sbjct: 318 LYALSATASSKRTVLSDLITVYAKGGKTIVFTQTKKDADEVSMALTSSIASEALHGDISQ 377
Query: 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN 455
QRE TL GFR GKF LVAT+VAARGLDI +V L+I E P D E ++HRSGRTGRAG
Sbjct: 378 HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDAETFVHRSGRTGRAGK 437
Query: 456 TGVAVMLY-DPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPA 514
G A+++Y ++ +V +ER+ G KFE +S P +I +++ + T+ +V +
Sbjct: 438 EGTAILMYTSSQRRTVRSLERDVGCKFEFVSPPAMEEILESSAEQVVATLNRVHPESVDF 497
Query: 515 FKSAAEELLNNSG 527
F + A++L+ G
Sbjct: 498 FIATAQKLVEEQG 510
>gi|146197863|dbj|BAF57642.1| nucleolar RNA helicase II/Gu protein [Dugesia japonica]
Length = 627
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 187/440 (42%), Positives = 266/440 (60%), Gaps = 16/440 (3%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
+S F +S L++KL+++G+++LFPIQ TF + G D++ +A+TG GKT AF LP+L
Sbjct: 46 LSNFPLSSDLQKKLQARGVKALFPIQIKTFHHIHTGKDVIAQAKTGTGKTFAFALPVLTK 105
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
L N K GR P V+V+ PTREL Q+ DF+ + L +YGG Y Q
Sbjct: 106 LENSGIDGLKS---GRKPKVIVMAPTRELVSQIASDFESLI-SKNLKVLSIYGGVSYEKQ 161
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV- 289
LK G+D++ G PGR++D I +G++DLS +++ +LDE D ML MGF + VE IL +
Sbjct: 162 TTALKNGVDIIAGAPGRVRDLINKGHLDLSKIEYVILDEVDRMLDMGFSDIVEEILSYIY 221
Query: 290 ---EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346
D QTLLFSAT+P+W+ +I K+LK D + L+ KA++ V H+ + C
Sbjct: 222 PSETDKKGPQTLLFSATMPNWIHNIVKKYLKPDAIKVCLIDENGSKAASTVEHLAIQCPW 281
Query: 347 SARSQVIPDIIRCYSSG--GRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVT 401
R+ IPDIIR + G R IIF E K+ A +LA + LHGD+ Q +RE+
Sbjct: 282 RERAGTIPDIIRVHGGGNQARCIIFCERKKDADELASHSAMKSDCHVLHGDVPQEKRELV 341
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L FR GK+ LV TNVAARGLD+ D+ L+IQC PP+DVE YIHRSGRTGRAG GV +
Sbjct: 342 LKKFREGKYSVLVTTNVAARGLDVPDIDLVIQCHPPKDVEDYIHRSGRTGRAGRKGVCIC 401
Query: 462 LYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y+P+ K + K+E+ +G F+ I P A I +A + E + ++V +FK +A
Sbjct: 402 FYEPKEKYDLQKVEKLAGFTFKRIFPPSAASIIEANLNDTIEAFKSIPETVCESFKESAI 461
Query: 521 ELLNNSGLSAAELLAKALAK 540
+L+ G A + +A ALAK
Sbjct: 462 KLIEQFG--AEKAMALALAK 479
>gi|72389634|ref|XP_845112.1| nucleolar RNA helicase II [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62176655|gb|AAX70758.1| nucleolar RNA helicase II, putative [Trypanosoma brucei]
gi|62360172|gb|AAX80591.1| nucleolar RNA helicase II, putative [Trypanosoma brucei]
gi|70801646|gb|AAZ11553.1| nucleolar RNA helicase II, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261328479|emb|CBH11456.1| nucleolar RNA helicase Gu, putative [Trypanosoma brucei gambiense
DAL972]
Length = 632
Score = 355 bits (910), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 211/499 (42%), Positives = 297/499 (59%), Gaps = 32/499 (6%)
Query: 78 KSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSR----FRISVPLREKLKSKGIESLF 133
+ E K K+++ E G EE ++ + AV R F +S + + L+++GI SLF
Sbjct: 11 RHEGHVTKTKRSR-EEMTGNEETDQEPNNGSAAVGRPFSEFNLSSGMVKALEAQGIVSLF 69
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
P+QA+TF+ ++ G D++ +ARTG GKTLAF +PI+E L K GR P+ ++
Sbjct: 70 PVQALTFEAIMRGEDVLVQARTGSGKTLAFGIPIVEKLN----KKEGPLARGRGPAAVIF 125
Query: 194 LPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI 252
PTRELA QV DV G G L LYGG Y QE L G+D+V+ TPGR KD +
Sbjct: 126 CPTRELAIQVR---DVLAGVSGDLVVAALYGGVAYSTQERVLFSGVDIVVATPGRAKDFL 182
Query: 253 ERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN-------KVQTLLFSATLP 305
E+G + +K LDEAD ML +GF ED+EL+L +V + N K QTLLFSAT+P
Sbjct: 183 EKGTLHFERVKMVCLDEADHMLDIGFKEDIELLLQRVAEQNGSTPDEPKHQTLLFSATVP 242
Query: 306 SWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GG 364
WV S F+ +KK ID+VG M+A+ +R C + S ++ D+++ YS G
Sbjct: 243 DWVHTCS--FISKNKKFIDMVGQGAMRAANTIRFYRRKCGFAEVSSMLADLVKVYSGRHG 300
Query: 365 RTIIFTETKESASQLA--DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
RT+IFT TK+ L+ + ++ LHGD+QQ QRE T+ FR KF L+AT+VAARG
Sbjct: 301 RTLIFTNTKKDCHDLSINNTKLDSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARG 360
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKF 481
LD+ V L+IQC PP D++A+IHR+GRTGRAG GV V+L+ P+ + V +IER + +KF
Sbjct: 361 LDLPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVLLHQPKDEYVVERIERHAKIKF 420
Query: 482 EHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKA 541
E + AP +I KA +AAE + +V S F A ELL ++ E+LA A+ A
Sbjct: 421 EVLPAPTREEILKAVARDAAEDMARVERSATNLFMDQAAELLKDA--DPTEILASAI--A 476
Query: 542 VVSAFLFSSSSNSLSLTSG 560
V+S ++SS L SG
Sbjct: 477 VMSG--YTSSITKRGLISG 493
>gi|449016019|dbj|BAM79421.1| nucleolar RNA helicase II/Gu [Cyanidioschyzon merolae strain 10D]
Length = 748
Score = 354 bits (909), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 191/437 (43%), Positives = 276/437 (63%), Gaps = 14/437 (3%)
Query: 99 EQERGESEHPN-AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQ 157
E ES+H + ++ RF +S L+ KGI L IQA+TF+ + G D++GR+ TG
Sbjct: 91 ENATSESKHRDWSLERFPLSEATAAALRKKGITELTEIQAITFNDMRSGRDVIGRSHTGT 150
Query: 158 GKTLAFVLPILESLTNGP-TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGL 216
GKT AF +P++E + + S++ GR+P LVL PTRELAKQV E + G GL
Sbjct: 151 GKTFAFGVPLVERMVEARVSNGSRRGAPGRSPCALVLTPTRELAKQVTEQLRLIGQPHGL 210
Query: 217 TSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM 276
C YGGA Y QE L++G DV++GTPGRI DH++RG ++LS+++ VLDEADEML +
Sbjct: 211 AVDCFYGGASYTQQEEALRRGFDVLVGTPGRILDHLDRGTLNLSNIRIAVLDEADEMLSL 270
Query: 277 GFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN 336
GF EDVE I K+ + QT+LFSAT+P WV+ I+ + ++ D+VG + +A+ N
Sbjct: 271 GFAEDVERIFQKMPPKEERQTVLFSATIPPWVQKIAAQHQRA-PVVHDVVGRTETRAAKN 329
Query: 337 VRHIVL--PCSSSARSQVIPDIIRCYSSGG--RTIIFTETKESASQLADLLP-----GAR 387
VRH+ + P + AR ++ DI+ ++ G R I+FT+TK A ++A A+
Sbjct: 330 VRHVAVRVPDADFARFAMLEDIVFAHAETGNQRCIVFTDTKREADEIAMTASIFRSSVAQ 389
Query: 388 ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRS 447
LHGD+ Q QRE+TL FR G+F LVAT+VAARGLDI++V +I+Q PPRDV+ YIHR+
Sbjct: 390 VLHGDVSQRQRELTLQQFRDGRFSILVATDVAARGLDIHEVDVIVQMRPPRDVDTYIHRA 449
Query: 448 GRTGRAGNTGVAVMLY-DPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQ 506
GRTGRAG +G AV++Y D + + +ER + ++FE P + A AA + +
Sbjct: 450 GRTGRAGRSGTAVIMYSDSERGLLRALERGASIRFEQAGPPTLERVLDVAAQNAARAVGE 509
Query: 507 VS-DSVIPAFKSAAEEL 522
S + V+P F+ AA+EL
Sbjct: 510 ASTNRVVPYFQRAADEL 526
>gi|145544585|ref|XP_001457977.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124425796|emb|CAK90580.1| unnamed protein product [Paramecium tetraurelia]
Length = 647
Score = 354 bits (909), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 189/425 (44%), Positives = 266/425 (62%), Gaps = 15/425 (3%)
Query: 121 REKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASK 180
R+ L+S+GI +LFPIQ F+ + +G D++G+ RTG GKTLA+ LPILE + K +K
Sbjct: 37 RKVLESRGIANLFPIQQQCFETIYNGDDIIGQDRTGSGKTLAYCLPILERIRGLGLKQNK 96
Query: 181 KTGYGRAPSVLVLLPTRELAKQVHEDFD-VYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
P VLVLLPTRELA QV +F+ + +YGG Q ++++G +
Sbjct: 97 N------PYVLVLLPTRELAIQVTTEFNSILHKENEYRIYSIYGGTDLRNQIDQVRQGCE 150
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
+V+GTPGRI+D +ER + L ++ VLDEAD+ML GF E++E I+ D K+Q LL
Sbjct: 151 IVVGTPGRIQDLLERKVLKLDEIQVVVLDEADQMLNFGFQENIEKIMSYFND-RKIQMLL 209
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSAT+P WVK +S K+++++ K I+L+ + + ST V+H L C+ + + I D++
Sbjct: 210 FSATIPDWVKELSQKYMEANTKHINLIKRHETQTSTTVKHYALQCAKNQLTGAIGDVVSV 269
Query: 360 YSS-GGRTIIFTETKESASQ--LADLLPG-ARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
Y RTIIF ETK ++ L LP + LHGDI Q QR VT GF++GKF LVA
Sbjct: 270 YGGRHARTIIFCETKRECNEIILHSKLPAETQPLHGDIPQQQRTVTFEGFKNGKFKCLVA 329
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS-VSKIE 474
TNVAARGLD V LIIQC PP+D+E+YIHRSGRTGRAG G+ + Y + S + ++E
Sbjct: 330 TNVAARGLDFPQVDLIIQCNPPKDIESYIHRSGRTGRAGKDGICITFYSKKDMSLIERVE 389
Query: 475 RESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELL 534
R + +KF ISAPQ DI KA+ + ++ VS ++ F+ A+E+L S E L
Sbjct: 390 RVAKIKFIKISAPQHQDIIKASSRDLQTSLQVVSKEIVDLFQPVAQEIL--SRCDPVEAL 447
Query: 535 AKALA 539
A+ALA
Sbjct: 448 ARALA 452
>gi|308804011|ref|XP_003079318.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
gi|116057773|emb|CAL53976.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
Length = 683
Score = 354 bits (908), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 185/421 (43%), Positives = 261/421 (61%), Gaps = 12/421 (2%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P V F +S + L+ +G+++LFPIQ +DG D+VGRARTG GKTLAF LP+
Sbjct: 24 PADVDNFGMSETTVQALRKRGVDALFPIQQAVLRPAMDGQDVVGRARTGTGKTLAFSLPV 83
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
+E L + R P +VL PTRELAKQV + ++ A L + C+YGG P
Sbjct: 84 IEKLLS--NGRGSGGRGYRNPKCIVLAPTRELAKQVENE--IFITAPTLDTACVYGGTPI 139
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
QE KL++G+D+V+GTPGRI D + R +DLS ++F VLDEAD+ML +GF EDVE IL
Sbjct: 140 GQQESKLRRGVDIVVGTPGRIMDLMNRRALDLSEIEFVVLDEADQMLNVGFEEDVEAILH 199
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
QT LFSAT+P WVK I+ KFLK+ +DLVG+ K K + + + S +
Sbjct: 200 DCPAGR--QTFLFSATMPQWVKQITKKFLKAQHVVVDLVGDNKQKVADTIDLMTCAVSQT 257
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARA----LHGDIQQSQREVTLA 403
+R+ ++ D++ Y+ + I FT+TK +A +L L G R LHGDI Q+QRE TL
Sbjct: 258 SRTSIVMDLVTVYAKDKKCICFTQTKRAADELTAAL-GKRVSCEVLHGDIAQAQRERTLQ 316
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
FR +F L+AT+VAARGLDI+DV L+I E P DVE+++HR GRTGRAG G A+ +Y
Sbjct: 317 RFRDNRFTVLIATDVAARGLDISDVDLVIHYELPNDVESFVHRCGRTGRAGQQGAAIAMY 376
Query: 464 DPRKSS-VSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEEL 522
R+S + +I++E+G F I P ++ A V A+ +++V ++P F A++L
Sbjct: 377 TDRESYMIRRIQKETGCDFRAIDIPSSTEVMDACAVTASNALSKVDSELLPFFAPTAKKL 436
Query: 523 L 523
L
Sbjct: 437 L 437
>gi|405978792|gb|EKC43154.1| Nucleolar RNA helicase 2 [Crassostrea gigas]
Length = 671
Score = 354 bits (908), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 191/445 (42%), Positives = 260/445 (58%), Gaps = 40/445 (8%)
Query: 92 EPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVG 151
E + G + E+ E+E S FR+S EKLK + + LFPIQ TFD V +G D++G
Sbjct: 138 ETKNGADLSEKTEAEILGDFSNFRLSDVTVEKLKKRNVNYLFPIQYKTFDHVYNGEDVIG 197
Query: 152 RARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211
+ARTG GKT V+ ++PTRELAKQV ++F+
Sbjct: 198 QARTGTGKT-----------------------------VIAMVPTRELAKQVSDEFESIS 228
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
GL+ C YGG PY Q ++ GIDV++GTPGRIKDHIE+GN+D ++ VLDE D
Sbjct: 229 D--GLSVACFYGGTPYEKQIRAIRSGIDVLVGTPGRIKDHIEKGNLDFKGVRHVVLDEVD 286
Query: 272 EMLRMGFVEDVELILGKVED---ANKVQTLLFSATLPSWVKHISTKFLKSDK-KTIDLVG 327
ML MGF EDVE I+ + QTLLFSATLPSWV + K++ DK + LV
Sbjct: 287 RMLDMGFAEDVETIISSAYNNGSGENPQTLLFSATLPSWVHDTARKYMNKDKLAKVSLVN 346
Query: 328 NEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLA---DLL 383
+++ + ST V+H+ + S R VI D+++ YS GR IIF ETK+ A L+ +
Sbjct: 347 SQENRTSTTVQHLAIRSSFWDRPSVIGDVLQVYSGKNGRAIIFNETKKEADNLSCSEYIK 406
Query: 384 PGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAY 443
A LHGDI Q +RE L FR GKF L+ T+VAARGLDI +V L+IQC PP DV++Y
Sbjct: 407 QDAHVLHGDIPQEKRETVLKSFREGKFNVLLTTDVAARGLDIPEVDLVIQCNPPEDVDSY 466
Query: 444 IHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAE 502
IHRSGRTGRAG GV + Y P + ++ +E + +KF+ +S P DI A+ +A
Sbjct: 467 IHRSGRTGRAGKNGVCICFYKPEEEMKLANVEYRAKIKFKKVSGPTKEDIISASVEDAVR 526
Query: 503 TITQVSDSVIPAFKSAAEELLNNSG 527
+I V + F+S+A+EL+ G
Sbjct: 527 SIEGVQSETLDYFRSSAKELIAERG 551
>gi|80477520|gb|AAI08449.1| LOC398188 protein [Xenopus laevis]
Length = 768
Score = 354 bits (908), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 184/425 (43%), Positives = 266/425 (62%), Gaps = 15/425 (3%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S+F IS + L++KG+ LFPIQ+ TF V G D+V +ARTG GKT +F +P++E L
Sbjct: 192 SKFPISKDTIKNLQAKGVTYLFPIQSKTFHTVYSGKDVVVQARTGTGKTFSFGIPLVERL 251
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
+ ++ GRAP V++L PTRELA Q+ + + L C YGG PY Q
Sbjct: 252 SEDQQPLAR----GRAPRVIILTPTRELAIQITNE--LRSMTKKLKVACFYGGTPYQQQV 305
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG---K 288
F +K GID ++GTPGRI+D ++ +DL+ LK VLDE D M MGF E VE IL K
Sbjct: 306 FAIKDGIDFLVGTPGRIRDLVQNYRLDLTVLKHVVLDEVDMMFDMGFSEQVEEILSVRYK 365
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348
+ QTLLFSAT P W+ +++ K+++ + +DLVG+ KA+ V H+ + C+ S
Sbjct: 366 PDPEENPQTLLFSATCPDWMYNVAKKYMRKQYEKVDLVGHRSQKAAITVEHLAIECNRSQ 425
Query: 349 RSQVIPDIIRCYS-SGGRTIIFTETKESASQLA----DLLPGARALHGDIQQSQREVTLA 403
++ V+ DI++ YS S G+TIIF ++K A +L+ L A+ LHGD+QQ +REV L
Sbjct: 426 KAAVLGDIVQVYSGSHGKTIIFCDSKLQAHELSTNCGSLKQSAKPLHGDLQQKEREVVLK 485
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
GFR G F L+ATNVAARGLDI +V L++ P++ +AY+HRSGRTGRAG TGV + LY
Sbjct: 486 GFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGVCISLY 545
Query: 464 DP-RKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEEL 522
+P K + +ER +G+ F+ + P ++AK++ +A +++ V VI FK A+EL
Sbjct: 546 EPWEKHYLRNVERSTGITFKRVGIPSLMNVAKSSSADAIKSLDTVPADVIEHFKEYAQEL 605
Query: 523 LNNSG 527
+ G
Sbjct: 606 IEKKG 610
>gi|148224339|ref|NP_001082033.1| nucleolar RNA helicase 2 [Xenopus laevis]
gi|10764780|gb|AAG22818.1|AF302422_1 RNA helicase II/Gu [Xenopus laevis]
Length = 800
Score = 352 bits (902), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 182/425 (42%), Positives = 266/425 (62%), Gaps = 15/425 (3%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S+F IS + ++KG+ LFPIQ+ TF V G D+V +ARTG GKT +F +P++E L
Sbjct: 224 SKFPISKDTIKNXQAKGVTYLFPIQSKTFHTVYSGKDVVVQARTGTGKTFSFGIPLVERL 283
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
+ ++ GRAP V++L PTRELA Q+ + + L C YGG PY Q
Sbjct: 284 SEDQQPLAR----GRAPRVIILTPTRELAIQITNE--LRSMTKKLKVACFYGGTPYQQQV 337
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG---K 288
F +K GID ++GTPGRI+D ++ +DL++LK VLDE D M +GF E VE IL K
Sbjct: 338 FAIKDGIDFLVGTPGRIRDLVQNYRLDLTALKHVVLDEVDMMFDVGFSEQVEEILSVRYK 397
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348
+ QTLLFSAT P W+ +++ K+++ + +DLVG+ KA+ V H+ + C+ S
Sbjct: 398 PDPEENPQTLLFSATCPDWMYNVAKKYMRKQYEKVDLVGHRSQKAAITVEHLAIECNRSQ 457
Query: 349 RSQVIPDIIRCYS-SGGRTIIFTETKESASQLA----DLLPGARALHGDIQQSQREVTLA 403
++ V+ DI++ YS S G+TIIF ++K A +L+ L A+ LHGD+QQ +REV L
Sbjct: 458 KAAVLGDIVQVYSGSHGKTIIFCDSKLQAHELSTNCGSLKQSAKPLHGDLQQKEREVVLK 517
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
GFR G F L+ATNVAARGLDI +V L++ P++ +AY+HRSGRTGRAG TGV + LY
Sbjct: 518 GFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGVCISLY 577
Query: 464 DP-RKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEEL 522
+P K + +ER +G+ F+ + P ++AK++ +A +++ V VI FK A+EL
Sbjct: 578 EPWEKHYLRNVERSTGITFKRVGIPSLMNVAKSSSADAIKSLDTVPADVIEHFKEYAQEL 637
Query: 523 LNNSG 527
+ G
Sbjct: 638 IEKKG 642
>gi|226356665|ref|YP_002786405.1| DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti VCD115]
gi|226318655|gb|ACO46651.1| putative DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti
VCD115]
Length = 602
Score = 351 bits (901), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 196/430 (45%), Positives = 276/430 (64%), Gaps = 22/430 (5%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
I+ L +L +GI PIQA + + L G D++GRARTG GKTLAF LPI++ L
Sbjct: 7 IAPELAARLAERGITEASPIQAESLPLTLAGRDMIGRARTGTGKTLAFALPIIQKLEPSR 66
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
+A R P +V+ PTRELAKQV E+F G VGLT+ +YGGA Y QE L+
Sbjct: 67 ERA-------RPPRAIVVAPTRELAKQVAEEFSKSG--VGLTTVTVYGGASYAPQENALR 117
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
+G+DVV+GTPGR+ DH+ERGN+DLS+++F VLDEADEML +GF + +E IL K D+
Sbjct: 118 RGVDVVVGTPGRLIDHLERGNLDLSAVEFAVLDEADEMLSVGFADAIETILQKTPDSR-- 175
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QT+LFSATL + + +S +L+ + +D+VG K +A+ V H+ + S R++V+ D
Sbjct: 176 QTMLFSATLNNDINRLSRNYLR-EPVIVDMVGEGKSQAAQTVEHLKVRVGRS-RTRVLAD 233
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFM 411
++ Y+ + I+FT TK A +LA+ L A ALHGD+ QSQRE L FRSG+
Sbjct: 234 LLTIYNPE-KAIVFTRTKREADELANELIHRGLEAEALHGDLAQSQRERALGAFRSGRVG 292
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SV 470
LVAT+VAARGLDI +V L++Q P+D E+Y+HRSGRTGRAG TG A+++Y R++ V
Sbjct: 293 VLVATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIIMYGDRENREV 352
Query: 471 SKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSA 530
+ER +GV+F P P ++ A+ +A+ + +V V F++ AE L + GL A
Sbjct: 353 MGLERITGVRFIERPLPTPKEVQAASAKTSADMVRKVDSGVAATFQAEAERLFSELGLEA 412
Query: 531 AELLAKALAK 540
L +ALAK
Sbjct: 413 ---LTRALAK 419
>gi|360044772|emb|CCD82320.1| putative dead box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 710
Score = 351 bits (901), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 195/435 (44%), Positives = 269/435 (61%), Gaps = 26/435 (5%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P S F I+ + EKL+++ I LFP+Q T+D++ G D V ARTG GKTLAF LP+
Sbjct: 95 PGDFSNFNIADVIIEKLRARNISELFPVQFKTYDIISSGRDAVVLARTGTGKTLAFSLPL 154
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD---VYGGAVGLTSCCLYGG 224
+ SL G + S+ + +P VLVL PTREL Q+ DF+ V+G + +TS +YGG
Sbjct: 155 VNSLIKG--QGSRPS----SPVVLVLAPTRELVTQIATDFESISVHG--IKVTS--VYGG 204
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
PY Q L++G +V+G PGR+ D +E+G + LSS++ VLDE D ML MGF +DVE
Sbjct: 205 VPYRPQCDALRQGTHIVVGAPGRVIDLMEKGVLKLSSVRHVVLDEVDRMLDMGFSKDVES 264
Query: 285 ILGKV---EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV 341
IL K+ E++ K QTLLFSAT+PSWV IS +L D + L+ ++ K STNV H+
Sbjct: 265 ILSKIYNSENSEKPQTLLFSATMPSWVSEISRCYLSDDALHLSLIDEQETKTSTNVTHLA 324
Query: 342 LPCSSSARSQVIPDIIRCYSSG--GRTIIFTETKESASQLA--DLLPG-ARALHGDIQQS 396
L C +R+ + D+I+ Y G R I+F E K+ A +L+ D + G LHG + Q
Sbjct: 325 LLCPYESRAATLSDVIKVYCKGRESRCIVFCERKKDADELSASDAMSGDCHVLHGSVPQD 384
Query: 397 QREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNT 456
+RE+ L FR GK+ TL+ TNVAARGLD+ +V L+IQC PPRD+E YIHRSGRTGRA +
Sbjct: 385 KRELVLQRFRDGKYRTLLTTNVAARGLDVPNVDLVIQCHPPRDIEDYIHRSGRTGRADRS 444
Query: 457 GVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSV---- 511
G ++ Y + +S +S+IE +G+ F ISAP DI A G E +T + V S
Sbjct: 445 GTSICFYTYKERSMLSRIENMAGITFRRISAPTINDITTAWGEEILKTFSNVPKSTWSTF 504
Query: 512 IPAFKSAAEELLNNS 526
+P S A +L NS
Sbjct: 505 VPLALSIANQLAQNS 519
>gi|118358020|ref|XP_001012258.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
gi|89294025|gb|EAR92013.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
SB210]
Length = 744
Score = 350 bits (899), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 203/509 (39%), Positives = 291/509 (57%), Gaps = 31/509 (6%)
Query: 76 NLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPI 135
+ SE E + KK ++E + + + +S++ + E L +GI LFPI
Sbjct: 46 DWDSESEDEDTKKNQIEAK-----------HNQDNMSKYIKNAKTIEILNKRGITYLFPI 94
Query: 136 QAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN-GPTKASKKTGYGRAPSVLVLL 194
Q F + G DL+G+ RTG GKTL F LP++E L N G + KK + P +LV++
Sbjct: 95 QEHCFQAIQAGKDLIGKDRTGSGKTLGFSLPLIEKLRNEGNFTSIKKK---QTPYMLVVV 151
Query: 195 PTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE 253
PTREL QV + + +YGG Q +++ G+++V+GTPGRI D E
Sbjct: 152 PTRELCIQVANEINTLKHTDNEFRVLQIYGGVDVREQANQIRDGVEIVVGTPGRIIDQYE 211
Query: 254 RGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED---ANKVQTLLFSATLPSWVKH 310
RG + S+ VLDEAD+ML GF ED+E I G +++ + Q LLFSAT+PSWV
Sbjct: 212 RGALMFHSIIATVLDEADQMLNFGFQEDIEKIFGFIKNDKGEERPQNLLFSATMPSWVHD 271
Query: 311 ISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG--RTII 368
I+ KFL+ D+ IDLV N K S +V H+ + C R++ I D+I CY G R II
Sbjct: 272 IARKFLREDRVLIDLVKNLGNKTSQDVTHLAINCPYFQRTEAIGDVILCYGGGAHSRVII 331
Query: 369 FTETKESASQL---ADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDI 425
F ETK A+++ A++ + LHGDI Q QRE+T GFR GKF LVATNVAARGLDI
Sbjct: 332 FCETKNEANEIMLKANIKQDVQVLHGDIPQKQREITFQGFREGKFKCLVATNVAARGLDI 391
Query: 426 NDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS-VSKIERESGVKFEHI 484
+V LI+Q EPP++++AYIHRSGRTGRAG GV + Y ++ S + +IE++ +K + +
Sbjct: 392 PEVDLIVQLEPPKELDAYIHRSGRTGRAGKKGVCITFYTKKQQSLIERIEKKCHIKMQKV 451
Query: 485 SAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVVS 544
APQPAD+ +A+ + + + V+ +V+ FK + +L+ G E L +A+ A +S
Sbjct: 452 GAPQPADLIRASQNDIKKNLMSVNRTVLGIFKEVSVDLIQEFG--PEEALERAI--AFIS 507
Query: 545 AFLFSSSSNSL--SLTSGTMCFFRLTSEF 571
F SL L R SEF
Sbjct: 508 GFTEKMKQRSLLCCLEGYVTYIVRTPSEF 536
>gi|356505715|ref|XP_003521635.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 771
Score = 350 bits (899), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 190/432 (43%), Positives = 278/432 (64%), Gaps = 12/432 (2%)
Query: 104 ESEHPNAVSRFRISVPLR--EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTL 161
ES HP+ + ++ +P R E L+S+GI LFPIQ L+G D++ RA+TG GKTL
Sbjct: 104 ESVHPDELDISKLDLPSRLVESLQSRGITQLFPIQRAVLVPALEGRDIIARAKTGTGKTL 163
Query: 162 AFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCL 221
AF +PI++ LT S + GR P LVL PTRELAKQV ++ + A L++ C+
Sbjct: 164 AFGIPIIKGLTEDEHAPSHRRS-GRLPRFLVLAPTRELAKQVEKE--IKESAPYLSTVCV 220
Query: 222 YGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVED 281
YGG Y Q+ L +G+DVV+GTPGRI D I ++ LS +++ VLDEAD+ML +GF ED
Sbjct: 221 YGGVSYVTQQGALSRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLAVGFEED 280
Query: 282 VELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV 341
VE+IL + + Q++LFSAT+PSWVK ++ K+L ++ TIDLVG+E+ K + ++
Sbjct: 281 VEMILENL--PAQRQSMLFSATMPSWVKKLARKYL-NNPLTIDLVGDEEEKLAEGIKLYA 337
Query: 342 LPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQR 398
+ +++++ ++ D++ Y+ GG+TI+FT+TK A +++ L + ALHGDI Q QR
Sbjct: 338 IAATATSKRTILSDLVTVYAKGGKTIVFTQTKRDADEVSLSLTNSIMSEALHGDISQHQR 397
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E TL GFR GKF LVAT+VAARGLDI +V LII E P D E ++HRSGRTGRAG G
Sbjct: 398 ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGN 457
Query: 459 AVMLY-DPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKS 517
A++LY ++ +V +ER+ G KFE +SAP ++ +++ + T+ V + F
Sbjct: 458 AILLYTSSQRRTVRSLERDVGCKFEFVSAPAMEEVLESSAEQVVATLGGVHPESVQFFTP 517
Query: 518 AAEELLNNSGLS 529
A+ L+ G S
Sbjct: 518 TAQRLIEEQGTS 529
>gi|115456345|ref|NP_001051773.1| Os03g0827700 [Oryza sativa Japonica Group]
gi|113550244|dbj|BAF13687.1| Os03g0827700, partial [Oryza sativa Japonica Group]
Length = 723
Score = 350 bits (899), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 200/450 (44%), Positives = 283/450 (62%), Gaps = 16/450 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A++R + L L+ +GI LFPIQ LDG DL+ RA+TG GKTLAF +P+++
Sbjct: 70 AIARLGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIK 129
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
L S + G R P VLVL PTRELAKQV ++ + A L++ C+YGG Y+
Sbjct: 130 QLMEEDDGRSVRRG--RIPRVLVLAPTRELAKQVEKE--IKESAPKLSTVCVYGGVSYNV 185
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q+ L +G+DVV+GTPGRI D I G++ L +K+ VLDEAD+ML +GF EDVE IL ++
Sbjct: 186 QQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQL 245
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
+ Q++LFSAT+P WVK +S ++L ++ TIDLVG++ K + ++ +P +S+++
Sbjct: 246 --PAERQSMLFSATMPGWVKKLSRRYL-NNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSK 302
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFR 406
V+ D+I Y+ GG+TI+FT+TK A +++ L + ALHGDI Q QRE TL GFR
Sbjct: 303 RTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFR 362
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DP 465
GKF LVAT+VAARGLDI +V LII E P D E ++HRSGRTGRAG G A++++ +
Sbjct: 363 QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNS 422
Query: 466 RKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNN 525
++ +V +ER+ G +F+ IS P D+ +++ T+ V I F AAE L
Sbjct: 423 QRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTESIQYFIPAAERLQEE 482
Query: 526 SGLSAAELLAKALAKAVVSAFLFSSSSNSL 555
G +A LA ALA +S F SS SL
Sbjct: 483 LGPNA---LASALAH--LSGFSQPPSSRSL 507
>gi|356572874|ref|XP_003554590.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 771
Score = 350 bits (899), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 189/432 (43%), Positives = 280/432 (64%), Gaps = 12/432 (2%)
Query: 104 ESEHPNAVSRFRISVPLR--EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTL 161
ES +P+ + ++ +P R E L+S+GI LFPIQ L+G D++ RA+TG GKTL
Sbjct: 103 ESVNPDELDISKLDLPSRLVESLRSRGITQLFPIQRAVLVPALEGRDIIARAKTGTGKTL 162
Query: 162 AFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCL 221
AF +PI++ LT S + GR P LVL PTRELAKQV ++ + A L++ C+
Sbjct: 163 AFGIPIIKGLTEDEHAPSHRRS-GRLPRFLVLAPTRELAKQVEKE--IKESAPYLSTVCV 219
Query: 222 YGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVED 281
YGG Y Q+ L +G+DVV+GTPGRI D I ++ LS +++ VLDEAD+ML +GF ED
Sbjct: 220 YGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLAVGFEED 279
Query: 282 VELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV 341
VE+IL + ++ Q++LFSAT+PSWVK ++ K+L ++ TIDLVG+E+ K + ++
Sbjct: 280 VEMILENL--PSQRQSMLFSATMPSWVKKLARKYL-NNPLTIDLVGDEEEKLAEGIKLYA 336
Query: 342 LPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQR 398
+ +++++ ++ D++ Y+ GG+TI+FT+TK A +++ L + ALHGDI Q QR
Sbjct: 337 IAATATSKRTILSDLVTVYAKGGKTIVFTQTKRDADEVSLSLTNSIMSEALHGDISQHQR 396
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E TL GFR GKF LVAT+VAARGLDI +V LII E P D E ++HRSGRTGRAG G
Sbjct: 397 ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGN 456
Query: 459 AVMLY-DPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKS 517
A++LY ++ +V +ER+ G KFE +S+P ++ +A+ + T+ V + F
Sbjct: 457 AILLYTSSQRRTVRSLERDVGCKFEFVSSPAMEEVLEASAEQVVATLCGVHPESVQFFTP 516
Query: 518 AAEELLNNSGLS 529
A++L+ G S
Sbjct: 517 TAQKLIEEQGTS 528
>gi|143455890|sp|Q0DM51.2|RH3_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 3, chloroplastic;
Flags: Precursor
gi|18855061|gb|AAL79753.1|AC096687_17 putative RNA helicase [Oryza sativa Japonica Group]
Length = 758
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 200/450 (44%), Positives = 283/450 (62%), Gaps = 16/450 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A++R + L L+ +GI LFPIQ LDG DL+ RA+TG GKTLAF +P+++
Sbjct: 105 AIARLGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIK 164
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
L S + G R P VLVL PTRELAKQV ++ + A L++ C+YGG Y+
Sbjct: 165 QLMEEDDGRSVRRG--RIPRVLVLAPTRELAKQVEKE--IKESAPKLSTVCVYGGVSYNV 220
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q+ L +G+DVV+GTPGRI D I G++ L +K+ VLDEAD+ML +GF EDVE IL ++
Sbjct: 221 QQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQL 280
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
+ Q++LFSAT+P WVK +S ++L ++ TIDLVG++ K + ++ +P +S+++
Sbjct: 281 --PAERQSMLFSATMPGWVKKLSRRYL-NNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSK 337
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFR 406
V+ D+I Y+ GG+TI+FT+TK A +++ L + ALHGDI Q QRE TL GFR
Sbjct: 338 RTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFR 397
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DP 465
GKF LVAT+VAARGLDI +V LII E P D E ++HRSGRTGRAG G A++++ +
Sbjct: 398 QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNS 457
Query: 466 RKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNN 525
++ +V +ER+ G +F+ IS P D+ +++ T+ V I F AAE L
Sbjct: 458 QRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTESIQYFIPAAERLQEE 517
Query: 526 SGLSAAELLAKALAKAVVSAFLFSSSSNSL 555
G +A LA ALA +S F SS SL
Sbjct: 518 LGPNA---LASALAH--LSGFSQPPSSRSL 542
>gi|124088759|ref|XP_001347224.1| Nucleolar RNA helicase II [Paramecium tetraurelia strain d4-2]
gi|50057613|emb|CAH03597.1| Nucleolar RNA helicase II, putative [Paramecium tetraurelia]
Length = 664
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 187/425 (44%), Positives = 264/425 (62%), Gaps = 15/425 (3%)
Query: 121 REKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASK 180
R+ L+ +GI +LFPIQ F+ + +G D++G+ RTG GKTLA+ LPILE + K +K
Sbjct: 37 RKVLEGRGISNLFPIQQQCFETIYNGDDIIGQDRTGSGKTLAYCLPILERIRGLGLKQNK 96
Query: 181 KTGYGRAPSVLVLLPTRELAKQVHEDFD-VYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
P VLVLLPTRELA QV +F+ + +YGG Q ++++G +
Sbjct: 97 N------PYVLVLLPTRELAIQVTTEFNTILHKENEYRIYSIYGGTDLRNQIDQVRQGCE 150
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
+V+GTPGRI+D +ER + L ++ VLDEAD+ML GF E++E I+ + K+Q LL
Sbjct: 151 IVVGTPGRIQDLLERKVLKLDEIQVVVLDEADQMLNFGFQENIEKIMSYFNE-RKIQMLL 209
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSAT+P WVK +S K+++++ K I+L+ + + ST V+H L C+ + S I D++
Sbjct: 210 FSATIPDWVKELSHKYMEANTKHINLIKRHETQTSTTVKHYALQCARNQLSGAIGDVVSV 269
Query: 360 YSS-GGRTIIFTETKESASQ--LADLLPG-ARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
Y RTIIF ETK ++ L LP + LHGDI Q QR VT GF++GKF LVA
Sbjct: 270 YGGRHARTIIFCETKRECNEIILHSKLPAETQPLHGDIPQQQRTVTFEGFKNGKFKCLVA 329
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS-VSKIE 474
TNVAARGLD V LIIQC PP+D+E+YIHRSGRTGRAG GV + Y + + ++E
Sbjct: 330 TNVAARGLDFPQVDLIIQCNPPKDIESYIHRSGRTGRAGKDGVCITFYSKKDMGLIERVE 389
Query: 475 RESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELL 534
R + +KF ISAPQ DI KA+ + ++ VS ++ F+ A+E++ S E L
Sbjct: 390 RVAKIKFIKISAPQHQDIIKASSRDLQTSLQVVSKEIVDMFQPVAQEII--SRCDPVEAL 447
Query: 535 AKALA 539
A+ALA
Sbjct: 448 ARALA 452
>gi|256083212|ref|XP_002577843.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 794
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 192/432 (44%), Positives = 264/432 (61%), Gaps = 20/432 (4%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P S F I+ + EKL+++ I LFP+Q T+D++ G D V ARTG GKTLAF LP+
Sbjct: 179 PGDFSNFNIADVIIEKLRARNISELFPVQFKTYDIISSGRDAVVLARTGTGKTLAFSLPL 238
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
+ SL G + S+ + +P VLVL PTREL Q+ DF+ G+ +YGG PY
Sbjct: 239 VNSLIKG--QGSRPS----SPVVLVLAPTRELVTQIATDFESIS-VHGIKVTSVYGGVPY 291
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q L++G +V+G PGR+ D +E+G + LSS++ VLDE D ML MGF +DVE IL
Sbjct: 292 RPQCDALRQGTHIVVGAPGRVIDLMEKGVLKLSSVRHVVLDEVDRMLDMGFSKDVESILS 351
Query: 288 KV---EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344
K+ E++ K QTLLFSAT+PSWV IS +L D + L+ ++ K STNV H+ L C
Sbjct: 352 KIYNSENSEKPQTLLFSATMPSWVSEISRCYLSDDALHLSLIDEQETKTSTNVTHLALLC 411
Query: 345 SSSARSQVIPDIIRCYSSG--GRTIIFTETKESASQLA--DLLPG-ARALHGDIQQSQRE 399
+R+ + D+I+ Y G R I+F E K+ A +L+ D + G LHG + Q +RE
Sbjct: 412 PYESRAATLSDVIKVYCKGRESRCIVFCERKKDADELSASDAMSGDCHVLHGSVPQDKRE 471
Query: 400 VTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 459
+ L FR GK+ TL+ TNVAARGLD+ +V L+IQC PPRD+E YIHRSGRTGRA +G +
Sbjct: 472 LVLQRFRDGKYRTLLTTNVAARGLDVPNVDLVIQCHPPRDIEDYIHRSGRTGRADRSGTS 531
Query: 460 VMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSV----IPA 514
+ Y + +S +S+IE +G+ F ISAP DI A G E +T + V S +P
Sbjct: 532 ICFYTYKERSMLSRIENMAGITFRRISAPTINDITTAWGEEILKTFSNVPKSTWSTFVPL 591
Query: 515 FKSAAEELLNNS 526
S A +L NS
Sbjct: 592 ALSIANQLAQNS 603
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 115/192 (59%), Gaps = 7/192 (3%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P S F I+ + EKL+++ I LFP+Q T+D++ G D V ARTG GKTLAF LP+
Sbjct: 8 PGDFSNFNIADVIIEKLRARNISELFPVQFKTYDIISSGRDAVVLARTGTGKTLAFSLPL 67
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
+ SL G + S+ + +P VLVL PTREL Q+ DF+ G+ +YGG PY
Sbjct: 68 VNSLIKG--QGSRPS----SPVVLVLAPTRELVTQIATDFESIS-VHGIKVTSVYGGVPY 120
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q L++G +V+G PGR+ D +E+G + LSS++ VLDE D ML MGF +DVE+ G
Sbjct: 121 RPQCDALRQGTHIVVGAPGRVIDLMEKGVLKLSSVRHVVLDEVDRMLDMGFSKDVEISPG 180
Query: 288 KVEDANKVQTLL 299
+ N ++
Sbjct: 181 DFSNFNIADVII 192
>gi|66475994|ref|XP_627813.1| nucleolar protein GU2. eIF4A-1-family. RNA SFII helicase
[Cryptosporidium parvum Iowa II]
gi|46229325|gb|EAK90174.1| nucleolar protein GU2. eIF4A-1-family. RNA SFII helicase
[Cryptosporidium parvum Iowa II]
Length = 738
Score = 348 bits (893), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 189/423 (44%), Positives = 275/423 (65%), Gaps = 27/423 (6%)
Query: 94 EAGVEEQERG-ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
E+ ++ ++R ESE ++ RF +S RE L+S+GIE LFPIQA +F+ + D++G+
Sbjct: 48 ESNMDHKKRKLESEVDGSIDRFPLSDESREILRSRGIERLFPIQAQSFESIYGKKDVLGK 107
Query: 153 ARTGQGKTLAFVLPILESLTN-GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211
A+TG GKTLAFVLP++E L G +K +GR P VLVLLPTRELA+QV +F++
Sbjct: 108 AKTGTGKTLAFVLPVIERLLKKGKFDPNK---HGRRPLVLVLLPTRELAQQVSNEFELMK 164
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
G C +YGG+P + Q ++KKG+D+V+G PGR+ D IERG +++S + LDEAD
Sbjct: 165 GKDRYKVCSVYGGSPEYPQIQEIKKGVDIVVGCPGRVLDFIERGILNVSKISVLTLDEAD 224
Query: 272 EMLRMGFVEDVELILGKVED----------ANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
+ML MGF E V+ I+ V NK Q LLFSAT+P WVK+I T+ + SD
Sbjct: 225 KMLEMGFKETVDKIIDCVRKETGDGETHSRQNKFQVLLFSATVPPWVKNILTEIMSSDTV 284
Query: 322 TIDLV-----GNEKMKAS--TNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETK 373
T+D+ G E+ +A+ + +RH+ + C+ R+ ++ DII Y+ G+ IIFTETK
Sbjct: 285 TVDVTHISIHGEEEDEAAARSRIRHLAIQCAYPQRTGLLGDIITMYAGINGKCIIFTETK 344
Query: 374 ESASQLA---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQL 430
++A+++A ++ + LHGDIQQ+QRE+ L F+ G++ LVAT+VAARGL I+DV +
Sbjct: 345 QTANEIAMRSEISKMCQVLHGDIQQNQREIALQAFKEGRYRCLVATDVAARGLHIDDVAV 404
Query: 431 IIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS-VSKIERESGVKFEHISAPQP 489
+IQ PPRD++ YIHRSGRTGRAG G A+M + +S IE+ S + F+ I PQ
Sbjct: 405 VIQLAPPRDIDTYIHRSGRTGRAGKFGTAIMFCNMSDYPFLSSIEKASKISFQRIGVPQY 464
Query: 490 ADI 492
+I
Sbjct: 465 EEI 467
>gi|224000281|ref|XP_002289813.1| RNA helicase [Thalassiosira pseudonana CCMP1335]
gi|220975021|gb|EED93350.1| RNA helicase [Thalassiosira pseudonana CCMP1335]
Length = 466
Score = 348 bits (893), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 199/441 (45%), Positives = 269/441 (60%), Gaps = 34/441 (7%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT----------- 172
L KGI P+QA VL G D++GR+RTG GKTLAF +P L +
Sbjct: 1 LSHKGITHFTPVQAKAMSPVLAGRDVIGRSRTGTGKTLAFGMPALTRMVERAKEKGNLEQ 60
Query: 173 --NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+G T+ K GR PS++VL PTRELA+QV ++ +GL S C +GG Y Q
Sbjct: 61 GRDGSTRMRK----GRLPSMIVLCPTRELARQVEDELSAVCKPLGLFSSCFHGGVSYDPQ 116
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
L++G+DV++GTPGR+ DHI+RGN+DLS VLDEADEML MGF EDVE+IL V
Sbjct: 117 ARALRQGVDVIVGTPGRVIDHIDRGNLDLSECDTVVLDEADEMLNMGFAEDVEVILEGVG 176
Query: 291 DAN--KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK-MKASTNVRH--IVLPCS 345
N K Q LLFSAT P WVK I + + + D +ID+ G + + ++ VRH I +P
Sbjct: 177 SKNREKTQCLLFSATTPPWVKEIGSHY-QRDVLSIDITGEQTGSRVASTVRHTAIQVPFG 235
Query: 346 SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLAD----LLPGARALHGDIQQSQREVT 401
+ A+ ++ DII + G+TI+FTETK+ A +L A+A+HGDI Q QR+ T
Sbjct: 236 ADAKKAILEDIIALF---GKTIVFTETKKEADELVSGSVFKTLSAQAIHGDIGQKQRDAT 292
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
LA FR+G F LVAT+VAARG+DI DV L+IQ EPPRDV+ Y+HRSGRTGRAG +G++V+
Sbjct: 293 LAAFRAGAFNVLVATDVAARGIDIKDVDLVIQFEPPRDVDTYVHRSGRTGRAGASGISVL 352
Query: 462 LYDPRKS-SVSKIERE--SGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSA 518
L+ ++ + +IE+ G KFE + P AA +A V+D FK A
Sbjct: 353 LFQQNQARDIVRIEKSLGHGFKFELLGPPSTEAALNAAAKTSALACRGVADETAAHFKDA 412
Query: 519 AEELLNNSGLSAAELLAKALA 539
A LL +SG S +++A+ LA
Sbjct: 413 AVSLLASSG-SPEDVVARCLA 432
>gi|403350666|gb|EJY74800.1| DEAD/DEAH box helicase family protein [Oxytricha trifallax]
Length = 795
Score = 348 bits (893), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 197/517 (38%), Positives = 287/517 (55%), Gaps = 36/517 (6%)
Query: 30 TEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKKKKKA 89
+E+ ++ D KKS KKE S +K +E+E + +T ++
Sbjct: 45 SESKKRDEKRDDKKSIKKEKSPSKKTIAVEKEVDHVKT-----------------RRMSQ 87
Query: 90 KVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDL 149
+ A +QE P +I+ E LK +GI LFP+Q +F+ + + DL
Sbjct: 88 AADQLASTVDQEGLYENFP------QITPKTVELLKKRGISGLFPVQYSSFNHIWNRKDL 141
Query: 150 VGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209
+ R TG GKTL F LP +E L ++K +VL PTRELA QV ++F+
Sbjct: 142 IVRDLTGSGKTLGFALPTVEYLRKNKLFGTRKI------QAMVLAPTRELALQVSKEFNA 195
Query: 210 YGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268
G +YGG Q ++L+KG+D+ +GT GR+ DH+ER N D + LK +LD
Sbjct: 196 LKHFEGEYNVLTVYGGVSIDDQTYQLRKGVDIFVGTTGRVMDHMERRNFDFTDLKTLILD 255
Query: 269 EADEMLRMGFVEDVELILGKVEDA--NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLV 326
E D+ML+ GF EDVE I+ ++ A N +Q LLFSAT+P WVK ++ + + D + +DL
Sbjct: 256 ETDQMLKQGFKEDVERIMQTIKAARPNGMQVLLFSATIPFWVKQVAKEQMAPDFQMVDLA 315
Query: 327 GNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA---DLL 383
N K K S V H+ + C R + DI+ CY G+TI+F TK A+ L +
Sbjct: 316 QNLKNKTSKTVNHLSINCPYQNRMSALADILICYGGLGQTIVFCSTKAEANSLLLSDKIK 375
Query: 384 PGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAY 443
+HGDI Q+QREVTL F+ KF LVAT+VA+RGLDI +V L+IQ EPP DVE+Y
Sbjct: 376 QDIEVMHGDIAQNQREVTLKRFKENKFSVLVATDVASRGLDIPNVDLVIQVEPPNDVESY 435
Query: 444 IHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAE 502
IHR+GRT RAG TG + Y + + ++ IE+++G+KF+ I PQP D+ KA+ + +
Sbjct: 436 IHRAGRTARAGRTGTCITFYGKKHQYMINMIEQKAGIKFQKIGVPQPEDVIKASSRDVIK 495
Query: 503 TITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALA 539
+ QV+D V+P F A+ L+ G A + L LA
Sbjct: 496 NLDQVNDEVLPLFDDTADGLIQKYGGDAKKALTATLA 532
>gi|449667537|ref|XP_002167666.2| PREDICTED: nucleolar RNA helicase 2-like [Hydra magnipapillata]
Length = 543
Score = 348 bits (893), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 182/381 (47%), Positives = 251/381 (65%), Gaps = 14/381 (3%)
Query: 154 RTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGA 213
RTG GKTL F LP+LE L N ++ +K +P VL L PTRELA Q+ ++ + Y
Sbjct: 4 RTGTGKTLGFALPVLEKLKNIDSEQKRK-----SPLVLTLAPTRELAIQICKEVEKYK-P 57
Query: 214 VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273
+T C YGGAPY QE +L+ GID ++GTPGRI DHI +G +D+S L++ +LDEAD M
Sbjct: 58 RQMTISCFYGGAPYDKQEQELRNGIDFLVGTPGRILDHINKGRLDVSKLQYVILDEADRM 117
Query: 274 LRMGFVEDVELIL--GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKM 331
+ MGF E +E IL ED NK QTLLFSAT+P+W++ S K+L + K DL+G +K
Sbjct: 118 MDMGFQESMEEILSYAYTED-NKPQTLLFSATVPAWLQKNSEKYLTKNLKKFDLIGRDKN 176
Query: 332 KASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLA---DLLPGAR 387
K +T V H + C+ R I DII+ YS G+TIIFT TK+ A++LA + ++
Sbjct: 177 KGATTVEHKAIKCTYWDRPSTIKDIIQQYSGKFGKTIIFTSTKQEANELALNSVINMDSQ 236
Query: 388 ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRS 447
LHGDIQQ QRE+TL FR+GKF L+AT+VAARGLDI +V L+IQ EPP+DV++YIHR+
Sbjct: 237 VLHGDIQQKQRELTLQSFRNGKFNCLIATDVAARGLDIPEVDLVIQTEPPKDVDSYIHRA 296
Query: 448 GRTGRAGNTGVAVMLYDP-RKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQ 506
GRTGRAG GV ++ Y P ++ V+ +E ++G+ F I APQ D+ A+ +A ++ +
Sbjct: 297 GRTGRAGRKGVCIIFYKPGQEYGVAAVEHKAGISFTRIGAPQQKDLIAASAEDAVRSLDE 356
Query: 507 VSDSVIPAFKSAAEELLNNSG 527
V + VI F A +L+ G
Sbjct: 357 VKEDVISYFLDCARDLIEKRG 377
>gi|94984710|ref|YP_604074.1| DEAD/DEAH box helicase [Deinococcus geothermalis DSM 11300]
gi|94554991|gb|ABF44905.1| ATP-dependent RNA helicase DbpA [Deinococcus geothermalis DSM
11300]
Length = 591
Score = 348 bits (892), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 192/430 (44%), Positives = 279/430 (64%), Gaps = 17/430 (3%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
I+ L +L +GI PIQA + L G DL+GRARTG GKTLAF LPI+++LT
Sbjct: 7 IAPELAARLAERGITEASPIQAESLPHTLAGKDLIGRARTGTGKTLAFALPIIQNLTAPD 66
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
+ S++ G R P +V+ PTRELAKQV E+F G L++ +YGGA Y QE L+
Sbjct: 67 GRGSRERG--RLPRAIVIAPTRELAKQVAEEFSKSGPQ--LSTVTVYGGAAYGPQENALR 122
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
+G+DVV+GTPGR+ DH+ERGN+DLS++++ VLDEADEML +GF + +E IL + A
Sbjct: 123 RGVDVVVGTPGRLIDHLERGNLDLSAIQYAVLDEADEMLSVGFADAIETILQQTPAAR-- 180
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QT+LFSATL + ++ K+L+ + +DLVG K +A+ +V H+ + + R++V+ D
Sbjct: 181 QTMLFSATLNDEIHRLARKYLR-EPVVVDLVGEGKSQAAQSVEHLKVKVGRT-RTRVLAD 238
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFM 411
++ Y+ + I+FT TK A +LA+ L + ALHGD+ QSQRE L FRSG+
Sbjct: 239 LLTVYNPE-KAIVFTRTKREADELANELIHRGIESEALHGDLAQSQRERALGAFRSGRVG 297
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SV 470
LVAT+VAARGLDI +V L++Q P+D E+Y+HRSGRTGRAG TG A+++Y R++ +
Sbjct: 298 VLVATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIVMYGDRENREL 357
Query: 471 SKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSA 530
+E +GV+F+ P P ++ A+ +A+ + +V V F++ AE L + GL A
Sbjct: 358 RNLEYRTGVQFKERPLPTPKEVQAASARASADLVRKVDSGVAATFQAEAERLFSELGLEA 417
Query: 531 AELLAKALAK 540
LA+ALAK
Sbjct: 418 ---LARALAK 424
>gi|67605637|ref|XP_666695.1| DEAD/DEAH box helicase [Cryptosporidium hominis TU502]
gi|54657739|gb|EAL36467.1| DEAD/DEAH box helicase [Cryptosporidium hominis]
Length = 678
Score = 348 bits (892), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 187/412 (45%), Positives = 268/412 (65%), Gaps = 26/412 (6%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ESE ++ RF +S RE L+S+GIE LFPIQA +F+ + D++G+A+TG GKTLAF
Sbjct: 9 ESEVDGSIDRFLLSDESREILRSRGIERLFPIQAQSFESIYGKKDVLGKAKTGTGKTLAF 68
Query: 164 VLPILESLTN-GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLY 222
VLP++E L G +K +GR P VLVLLPTRELA+QV +F++ G C +Y
Sbjct: 69 VLPVIERLLKKGKFDPNK---HGRRPLVLVLLPTRELAQQVSNEFELMKGKDRYKVCSVY 125
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG+P + Q ++KKG+D+V+G PGR+ D IERG +++S + LDEAD+ML MGF E V
Sbjct: 126 GGSPEYPQIQEIKKGVDIVVGCPGRVLDFIERGILNVSKISVLTLDEADKMLEMGFKETV 185
Query: 283 ELILGKVED----------ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLV-----G 327
+ I+ V NK Q LLFSAT+P WVK+I T+ + SD T+D+ G
Sbjct: 186 DKIIDCVRKETGDGETHSRQNKFQVLLFSATVPPWVKNILTEIMSSDTVTVDVTHISIHG 245
Query: 328 NEKMKAS--TNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLA---D 381
E+ +A+ + +RH+ + C+ R+ ++ DII Y+ G+ IIFTETK++A+++A +
Sbjct: 246 EEEDEAAARSRIRHLAIQCAYPQRTGLLGDIITMYAGINGKCIIFTETKQTANEIAMRSE 305
Query: 382 LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVE 441
+ + LHGDIQQ+QRE+ L F+ G++ LVAT+VAARGL I+DV ++IQ PPRD++
Sbjct: 306 ISKMCQVLHGDIQQNQREIALQAFKEGRYRCLVATDVAARGLHIDDVAVVIQLAPPRDID 365
Query: 442 AYIHRSGRTGRAGNTGVAVMLYDPRKSS-VSKIERESGVKFEHISAPQPADI 492
YIHRSGRTGRAG G A+M + +S IE+ S + F+ I PQ +I
Sbjct: 366 TYIHRSGRTGRAGKFGTAIMFCNMSDYPFLSSIEKASKISFQRIGVPQYEEI 417
>gi|428178088|gb|EKX46965.1| hypothetical protein GUITHDRAFT_159596 [Guillardia theta CCMP2712]
Length = 676
Score = 347 bits (891), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 183/440 (41%), Positives = 279/440 (63%), Gaps = 29/440 (6%)
Query: 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVL 165
+ P + F IS + L +GI SLFP+Q TF+ + +G D++ RARTG GKTL F L
Sbjct: 46 DEPGDLRNFPISDQTLDCLAQRGITSLFPVQYSTFNEIFEGRDVLARARTGTGKTLGFSL 105
Query: 166 PILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA 225
PILE + G AP+ ++L PTRELA+QV + V + C+YGG
Sbjct: 106 PILE-----------RRSRGSAPACIILSPTRELAQQVEREVQV-------KTLCVYGGV 147
Query: 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285
PYH QE +L+ G+D+V+GTPGR+ D + G +DLS +++ VLDEADEML GF +DVE +
Sbjct: 148 PYHKQEKELQMGVDIVVGTPGRLIDLMNNGALDLSEIRYLVLDEADEMLNRGFADDVETL 207
Query: 286 LGKV-EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344
+G + + A++ QTLLFSAT+P WV+ ++ L + + +DLVG K+K + V H+ +
Sbjct: 208 MGGMPQGADRPQTLLFSATVPDWVRKLARTSLVNPHE-VDLVGESKLKVAEGVSHVAVAS 266
Query: 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESA----SQLADLLPGARALHGDIQQSQREV 400
++ RS ++ D+I Y + I+F TK A ++L ++ G ALHGDI Q+ RE
Sbjct: 267 AARQRSTLLADLITIYKTQ-HAIVFVNTKRDADDLVAELGLIIKGTEALHGDIPQNVREK 325
Query: 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV 460
L GFR+G+ L+AT+VAARGLDI+ + L++ P+D+E +IHR+GRTGRAG TG ++
Sbjct: 326 ILNGFRTGRIPVLIATDVAARGLDIDHIDLVVHFGVPKDLEMFIHRAGRTGRAGRTGTSL 385
Query: 461 MLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAA 519
+L+D ++ +++IE+++G+KFE PQP +I +A+ + AA+ + V+ + F A
Sbjct: 386 VLFDKAEAFQLTRIEKDAGIKFEKRGVPQPDEIMEASAIRAADNLKTVNPELEGFFLGKA 445
Query: 520 EELLNNSGLSAAELLAKALA 539
+EL G+++ LAKALA
Sbjct: 446 QELYAQDGIAS---LAKALA 462
>gi|414886327|tpg|DAA62341.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 317
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 162/209 (77%), Positives = 188/209 (89%), Gaps = 1/209 (0%)
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETK 373
+FLK D+KT+DLVGNEK+KAS +V+H+ LPC+ +AR+QVIPDIIRCYS GGRTIIFTETK
Sbjct: 2 RFLKVDRKTVDLVGNEKLKASASVKHLALPCNKAARAQVIPDIIRCYSHGGRTIIFTETK 61
Query: 374 ESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ 433
+SAS+L+ L+ G+RALHGD+ Q+QREV LAGFRSGKF LVATNVAARGLDINDVQLIIQ
Sbjct: 62 DSASELSGLIHGSRALHGDVAQAQREVILAGFRSGKFQVLVATNVAARGLDINDVQLIIQ 121
Query: 434 CEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADI 492
CEPPRDVEAYIHRSGRTGRAGNTGVAVMLY+PR K SVS++ERESGVKFEHISAPQP D+
Sbjct: 122 CEPPRDVEAYIHRSGRTGRAGNTGVAVMLYEPRYKHSVSRLERESGVKFEHISAPQPTDV 181
Query: 493 AKAAGVEAAETITQVSDSVIPAFKSAAEE 521
A++AG EAA+ I VSDSVIP F+ AE+
Sbjct: 182 AQSAGSEAADAIASVSDSVIPIFRQQAEQ 210
>gi|32399063|emb|CAD98303.1| DEAD/DEAH box helicase, possible [Cryptosporidium parvum]
gi|323508801|dbj|BAJ77294.1| cgd6_4860 [Cryptosporidium parvum]
Length = 688
Score = 347 bits (890), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 187/412 (45%), Positives = 268/412 (65%), Gaps = 26/412 (6%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ESE ++ RF +S RE L+S+GIE LFPIQA +F+ + D++G+A+TG GKTLAF
Sbjct: 9 ESEVDGSIDRFPLSDESREILRSRGIERLFPIQAQSFESIYGKKDVLGKAKTGTGKTLAF 68
Query: 164 VLPILESLTN-GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLY 222
VLP++E L G +K +GR P VLVLLPTRELA+QV +F++ G C +Y
Sbjct: 69 VLPVIERLLKKGKFDPNK---HGRRPLVLVLLPTRELAQQVSNEFELMKGKDRYKVCSVY 125
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG+P + Q ++KKG+D+V+G PGR+ D IERG +++S + LDEAD+ML MGF E V
Sbjct: 126 GGSPEYPQIQEIKKGVDIVVGCPGRVLDFIERGILNVSKISVLTLDEADKMLEMGFKETV 185
Query: 283 ELILGKVED----------ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLV-----G 327
+ I+ V NK Q LLFSAT+P WVK+I T+ + SD T+D+ G
Sbjct: 186 DKIIDCVRKETGDGETHSRQNKFQVLLFSATVPPWVKNILTEIMSSDTVTVDVTHISIHG 245
Query: 328 NEKMKAS--TNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLA---D 381
E+ +A+ + +RH+ + C+ R+ ++ DII Y+ G+ IIFTETK++A+++A +
Sbjct: 246 EEEDEAAARSRIRHLAIQCAYPQRTGLLGDIITMYAGINGKCIIFTETKQTANEIAMRSE 305
Query: 382 LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVE 441
+ + LHGDIQQ+QRE+ L F+ G++ LVAT+VAARGL I+DV ++IQ PPRD++
Sbjct: 306 ISKMCQVLHGDIQQNQREIALQAFKEGRYRCLVATDVAARGLHIDDVAVVIQLAPPRDID 365
Query: 442 AYIHRSGRTGRAGNTGVAVMLYDPRKSS-VSKIERESGVKFEHISAPQPADI 492
YIHRSGRTGRAG G A+M + +S IE+ S + F+ I PQ +I
Sbjct: 366 TYIHRSGRTGRAGKFGTAIMFCNMSDYPFLSSIEKASKISFQRIGVPQYEEI 417
>gi|71406310|ref|XP_805705.1| nucleolar RNA helicase II [Trypanosoma cruzi strain CL Brener]
gi|70869212|gb|EAN83854.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
Length = 660
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 203/492 (41%), Positives = 291/492 (59%), Gaps = 22/492 (4%)
Query: 76 NLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPI 135
N +EK + + + G E G + S F + E LKS+GI +LFP+
Sbjct: 17 NPSAEKRARYETNESDDKSGGGEAPNNGSALTGRPFSDFDLLPNTVEALKSQGITALFPV 76
Query: 136 QAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195
QA+T++ ++ GS+++ +ARTG GKTLAF +PILE L TK++++ GR P+ ++ P
Sbjct: 77 QALTYEAIMKGSNVLVQARTGSGKTLAFGIPILEKLAR-TTKSNEQPVRGRGPAAVIFCP 135
Query: 196 TRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
TRELA QV DV G + G LYGG Y QE L G+DVV+ TPGR KD +E+
Sbjct: 136 TRELAIQVR---DVIAGISKGFVVTALYGGVAYSTQERALYSGVDVVVATPGRAKDFLEK 192
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN-------KVQTLLFSATLPSW 307
+ +K LDEAD ML +GF +D+EL+L KV + N QTLLFSAT+P W
Sbjct: 193 RTLCFDRVKVVCLDEADHMLDIGFKDDIELLLQKVAEQNGSTEGNPNHQTLLFSATVPEW 252
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRT 366
V S F+ +K+ ID+VG M+A+ ++ C S S ++ D+++ YS GRT
Sbjct: 253 VHTCS--FIPRNKEFIDMVGQGTMRAANTIKFYRRKCHFSEVSCMLADLVKVYSGRHGRT 310
Query: 367 IIFTETKESASQLA--DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLD 424
++FT TK+ L+ + ++ LHGD+QQ QRE T+ FR KF L+AT+VAARGLD
Sbjct: 311 LVFTNTKKECHDLSINNTKLDSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLD 370
Query: 425 INDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS-VSKIERESGVKFEH 483
+ V L+IQC PP D++A+IHR+GRTGRAG GV V+L+ P+ V +IER + +KFE
Sbjct: 371 LPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVLLHQPKDEYIVERIERHAKIKFEV 430
Query: 484 ISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVV 543
+ AP +I +A +AAE + +V S F A ELL ++ A E+LA A+ AV+
Sbjct: 431 LPAPTRDEILRAVARDAAEDLARVERSATNLFMEQAAELLKDA--DATEILASAI--AVM 486
Query: 544 SAFLFSSSSNSL 555
S + S + L
Sbjct: 487 SGYTSSITRRGL 498
>gi|343470250|emb|CCD17000.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 633
Score = 346 bits (888), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 198/460 (43%), Positives = 276/460 (60%), Gaps = 25/460 (5%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F +S + + L+ +GI SLFP+QA+TF+ ++ G D++ +ARTG GKTLAF +PI+E L
Sbjct: 49 SDFDLSPGIVKALEKQGITSLFPVQALTFEAIIRGEDVLVQARTGSGKTLAFGIPIVEKL 108
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
K GR PS ++ PTRELA QV + G L LYGG Y QE
Sbjct: 109 N----KIEGPLPRGRGPSAVIFCPTRELAIQVRDVLSSISG--DLVVAALYGGVAYSIQE 162
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
L G+D+V+ TPGR KD +E+G + +K LDEAD ML +GF ED+EL+L +V +
Sbjct: 163 RVLHSGVDIVVATPGRAKDFLEKGTLRFDRVKMACLDEADHMLDIGFKEDIELLLQRVAE 222
Query: 292 AN-------KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344
N QTLLFSAT+P WV S F+ +KK ID+VG +M+A+ ++ C
Sbjct: 223 HNGSTYERCNHQTLLFSATVPDWVHTCS--FISKNKKFIDMVGQGEMRAANTIKFFRRKC 280
Query: 345 SSSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLA--DLLPGARALHGDIQQSQREVT 401
S S ++ D+++ YS GRT+IFT TK+ L+ + ++ LHGD+QQ QRE T
Sbjct: 281 GFSEVSSMLADLVKVYSGRHGRTLIFTNTKKDCHDLSINNTKLDSQCLHGDMQQDQREST 340
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
+ FR F L+AT+VAARGLD+ V L+IQC PP D++A+IHR+GRTGRAG GV V+
Sbjct: 341 MKSFRENMFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVL 400
Query: 462 LYDPRKSS-VSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
L+ PR V +IER + +KFE + AP +I KA +AAE + +V S F A
Sbjct: 401 LHQPRDEHIVERIERHANIKFEVLPAPTREEILKAVARDAAEDMARVERSATNLFMEQAA 460
Query: 521 ELLNNSGLSAAELLAKALAKAVVSAFLFSSSSNSLSLTSG 560
ELL ++ E+LA A+ AV+S ++SS L +G
Sbjct: 461 ELLKDA--DPTEILASAI--AVMSG--YTSSITKRGLITG 494
>gi|342181264|emb|CCC90744.1| putative nucleolar RNA helicase II [Trypanosoma congolense IL3000]
Length = 633
Score = 346 bits (888), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 198/460 (43%), Positives = 276/460 (60%), Gaps = 25/460 (5%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F +S + + L+ +GI SLFP+QA+TF+ ++ G D++ +ARTG GKTLAF +PI+E L
Sbjct: 49 SDFDLSPGIVKALEKQGITSLFPVQALTFEAIIRGEDVLVQARTGSGKTLAFGIPIVEKL 108
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
K GR PS ++ PTRELA QV + G L LYGG Y QE
Sbjct: 109 N----KIEGPLPRGRGPSAVIFCPTRELAIQVRDVLSSISG--DLVVAALYGGVAYSIQE 162
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
L G+D+V+ TPGR KD +E+G + +K LDEAD ML +GF ED+EL+L +V +
Sbjct: 163 RVLHSGVDIVVATPGRAKDFLEKGTLRFDRVKMACLDEADHMLDIGFKEDIELLLQRVAE 222
Query: 292 AN-------KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344
N QTLLFSAT+P WV S F+ +KK ID+VG +M+A+ ++ C
Sbjct: 223 HNGSTYERCNHQTLLFSATVPDWVHTCS--FISKNKKFIDMVGQGEMRAANTIKFFRRKC 280
Query: 345 SSSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLA--DLLPGARALHGDIQQSQREVT 401
S S ++ D+++ YS GRT+IFT TK+ L+ + ++ LHGD+QQ QRE T
Sbjct: 281 GFSEVSSMLADLVKVYSGRHGRTLIFTNTKKDCHDLSINNTKLDSQCLHGDMQQDQREST 340
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
+ FR F L+AT+VAARGLD+ V L+IQC PP D++A+IHR+GRTGRAG GV V+
Sbjct: 341 MKSFRENMFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVL 400
Query: 462 LYDPRKSS-VSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
L+ PR V +IER + +KFE + AP +I KA +AAE + +V S F A
Sbjct: 401 LHQPRDEHIVERIERHANIKFEVLPAPTREEILKAVARDAAEDMARVERSATNLFMEQAA 460
Query: 521 ELLNNSGLSAAELLAKALAKAVVSAFLFSSSSNSLSLTSG 560
ELL ++ E+LA A+ AV+S ++SS L +G
Sbjct: 461 ELLKDA--DPTEILASAI--AVMSG--YTSSITKRGLITG 494
>gi|195612018|gb|ACG27839.1| nucleolar RNA helicase 2 [Zea mays]
Length = 744
Score = 346 bits (888), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 200/464 (43%), Positives = 284/464 (61%), Gaps = 19/464 (4%)
Query: 101 ERGESEHPN-AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGK 159
E GE ++ A++R + L L+ +GI LFPIQ L+G DL+ RA+TG GK
Sbjct: 79 EAGEGDNEELAIARLGLPDELVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGK 138
Query: 160 TLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC 219
TLAF +P+++ L + T GR P VLVL PTRELAKQV ++ + A L +
Sbjct: 139 TLAFGIPMIKQLIE--QDDGRITRRGRTPRVLVLAPTRELAKQVEKE--IKESAPKLGTV 194
Query: 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV 279
C+YGG Y+ Q+ L +G+DVV+GTPGRI D I G++ L +++ VLDEAD+ML +GF
Sbjct: 195 CVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVQYLVLDEADQMLAVGFE 254
Query: 280 EDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRH 339
EDVE IL ++ Q++LFSAT+PSWVK +S ++L ++ TIDLVG++ K + ++
Sbjct: 255 EDVETILQQLPAGR--QSMLFSATMPSWVKKLSRRYL-NNPLTIDLVGDQDEKLAEGIKL 311
Query: 340 IVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQS 396
+P +++++ V+ D+I Y+ GG+TI+FT TK+ A +++ L + ALHGDI Q
Sbjct: 312 YAIPLTATSKRTVLSDLITVYAKGGKTIVFTRTKKDADEVSLALTNSIASEALHGDISQH 371
Query: 397 QREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNT 456
QRE TL GFR GKF LVAT+VAARGLDI +V LII E P D E ++HRSGRTGRAG
Sbjct: 372 QRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKA 431
Query: 457 GVAVMLY-DPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAF 515
G A++++ +K +V +ER+ G FE IS P ++ +++ T+ V F
Sbjct: 432 GTAILMFTSSQKRTVKSLERDVGCNFEFISPPSIEEVLESSAEHVIATLRGVHPESTKYF 491
Query: 516 KSAAEELLNNSGLSAAELLAKALAKAVVSAFLFSSSSNSLSLTS 559
AAE+L EL ALA A+ FS +S SL S
Sbjct: 492 LGAAEKL-------TEELGPHALASALAHLSGFSQPPSSRSLIS 528
>gi|71409597|ref|XP_807135.1| nucleolar RNA helicase II [Trypanosoma cruzi strain CL Brener]
gi|70871069|gb|EAN85284.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
Length = 633
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 202/492 (41%), Positives = 291/492 (59%), Gaps = 22/492 (4%)
Query: 76 NLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPI 135
N +EK + + + G E G + S F + E LKS+GI +LFP+
Sbjct: 17 NPSAEKRARYETNESDDKSGGGEAPNNGSALTGRPFSDFDLLPNTVEALKSQGITTLFPV 76
Query: 136 QAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195
QA+T++ ++ GS+++ +ARTG GKTLAF +PI+E L TK++++ GR P+ ++ P
Sbjct: 77 QALTYEAIMKGSNVLVQARTGSGKTLAFGIPIVEKLAR-TTKSNEQPVRGRGPAAVIFCP 135
Query: 196 TRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
TRELA QV DV G + G LYGG Y QE L G+DVV+ TPGR KD +E+
Sbjct: 136 TRELAIQVR---DVIAGISKGFVVTALYGGVAYSTQERALYSGVDVVVATPGRAKDFLEK 192
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV-------QTLLFSATLPSW 307
+ +K LDEAD ML +GF +D+EL+L KV + N QTLLFSAT+P W
Sbjct: 193 RTLCFDRVKVVCLDEADHMLDIGFKDDIELLLQKVAEQNGSTEGNPTHQTLLFSATVPEW 252
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRT 366
V S F+ +K+ ID+VG M+A+ ++ C S S ++ D+++ YS GRT
Sbjct: 253 VHTCS--FIPRNKEFIDMVGQGTMRAANTIKFYRRKCHFSEVSCMLADLVKVYSGRHGRT 310
Query: 367 IIFTETKESASQLA--DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLD 424
++FT TK+ L+ + ++ LHGD+QQ QRE T+ FR KF L+AT+VAARGLD
Sbjct: 311 LVFTNTKKECHDLSINNTKLDSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLD 370
Query: 425 INDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS-VSKIERESGVKFEH 483
+ V L+IQC PP D++A+IHR+GRTGRAG GV V+L+ P+ V +IER + +KFE
Sbjct: 371 LPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVLLHQPKDEYIVERIERHAKIKFEV 430
Query: 484 ISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVV 543
+ AP +I +A +AAE + +V S F A ELL ++ A E+LA A+ AV+
Sbjct: 431 LPAPTRDEILRAVARDAAEDLARVERSATNLFMEQAAELLKDA--DATEILASAI--AVM 486
Query: 544 SAFLFSSSSNSL 555
S + S + L
Sbjct: 487 SGYTSSITRRGL 498
>gi|414873743|tpg|DAA52300.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 743
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 200/464 (43%), Positives = 284/464 (61%), Gaps = 19/464 (4%)
Query: 101 ERGESEHPN-AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGK 159
E GE ++ A++R + L L+ +GI LFPIQ L+G DL+ RA+TG GK
Sbjct: 79 EAGEGDNEELAIARLGLPDELVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGK 138
Query: 160 TLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC 219
TLAF +P+++ L + T GR P VLVL PTRELAKQV ++ + A L +
Sbjct: 139 TLAFGIPMIKQLIE--QDDGRITRRGRTPRVLVLAPTRELAKQVEKE--IKESAPKLGTV 194
Query: 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV 279
C+YGG Y+ Q+ L +G+DVV+GTPGRI D I G++ L +++ VLDEAD+ML +GF
Sbjct: 195 CVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVQYLVLDEADQMLAVGFE 254
Query: 280 EDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRH 339
EDVE IL ++ Q++LFSAT+PSWVK +S ++L ++ TIDLVG++ K + ++
Sbjct: 255 EDVETILQQLPAGR--QSMLFSATMPSWVKKLSRRYL-NNPLTIDLVGDQDEKLAEGIKL 311
Query: 340 IVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQS 396
+P +++++ V+ D+I Y+ GG+TI+FT TK+ A +++ L + ALHGDI Q
Sbjct: 312 YAIPLTTTSKRTVLSDLITVYAKGGKTIVFTRTKKDADEVSLALTNSIASEALHGDISQH 371
Query: 397 QREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNT 456
QRE TL GFR GKF LVAT+VAARGLDI +V LII E P D E ++HRSGRTGRAG
Sbjct: 372 QRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKA 431
Query: 457 GVAVMLY-DPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAF 515
G A++++ +K +V +ER+ G FE IS P ++ +++ T+ V F
Sbjct: 432 GTAILMFTSSQKRTVKSLERDVGCNFEFISPPSIEEVLESSAEHVIATLRGVHPESTKYF 491
Query: 516 KSAAEELLNNSGLSAAELLAKALAKAVVSAFLFSSSSNSLSLTS 559
AAE+L EL ALA A+ FS +S SL S
Sbjct: 492 LGAAEKL-------TEELGPHALASALAHLSGFSQPPSSRSLIS 528
>gi|413932546|gb|AFW67097.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 745
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 198/454 (43%), Positives = 282/454 (62%), Gaps = 18/454 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A++R + L L+ +GI LFPIQ L G DL+ RA+TG GKTLAF +P+++
Sbjct: 89 AIARLGLPDELVATLEKRGITHLFPIQRAVLIPALGGRDLIARAKTGTGKTLAFGIPMIK 148
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
L + T GR P VLVL PTRELAKQV ++ + A L + C+YGG Y+
Sbjct: 149 QLME--QDDGRSTRRGRTPRVLVLAPTRELAKQVEKE--IKESAPKLGTVCVYGGVSYNV 204
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q+ L +G+DVV+GTPGRI D I G++ L +++ VLDEAD+ML +GF EDVE IL ++
Sbjct: 205 QQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVQYLVLDEADQMLAVGFEEDVETILQQL 264
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
A++ Q++LFSAT+PSWVK +S ++L ++ TIDLVG++ K + ++ +P +++++
Sbjct: 265 P-ADR-QSMLFSATMPSWVKKLSRRYL-NNPLTIDLVGDQDEKLAEGIKLHAIPLTATSK 321
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFR 406
++ D+I Y+ GG+TI+FT TK+ A +++ L + ALHGDI Q QRE TL GFR
Sbjct: 322 RTILSDLITVYAKGGKTIVFTRTKKDADEVSLALTTSIASEALHGDISQHQRERTLNGFR 381
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DP 465
GKF LVAT+VAARGLDI +V LII E P D E ++HRSGRTGRAG G A++++
Sbjct: 382 QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTSS 441
Query: 466 RKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNN 525
+K +V +ER+ G KFE IS P ++ +++ T+ V F AAE+L
Sbjct: 442 QKRTVMSLERDVGCKFEFISPPSIEEVLESSAEHVIATLRGVHPESTQYFLGAAEKLTE- 500
Query: 526 SGLSAAELLAKALAKAVVSAFLFSSSSNSLSLTS 559
EL ALA A+ FS +S SL S
Sbjct: 501 ------ELGPHALASALAHLSGFSQPPSSRSLIS 528
>gi|47827092|dbj|BAD21122.1| ATP-dependent RNA helicase [Hordeum vulgare subsp. vulgare]
gi|326532610|dbj|BAK05234.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 764
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 193/454 (42%), Positives = 279/454 (61%), Gaps = 18/454 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A+SR + L L+ +GI LFPIQ L+G DL+ RA+TG GKTLAF +P+++
Sbjct: 92 AISRLGLPAQLVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFGIPMIK 151
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
+ + G GR P LVL PTRELAKQV ++ + A L++ C+YGG Y+
Sbjct: 152 QIIE--QDEGRTPGRGRIPRALVLAPTRELAKQVEKE--IMESAPKLSTVCVYGGVSYNT 207
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q+ L +G+DVV+GTPGR+ D I G++ L +++ VLDEAD+ML +GF EDVE IL ++
Sbjct: 208 QQNALSRGVDVVVGTPGRLIDLINGGSLQLGEVRYLVLDEADQMLAVGFEEDVETILQQL 267
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
+ Q++LFSAT+PSWVK +S ++L ++ TIDLVG++ K + ++ +P +++++
Sbjct: 268 --PAERQSMLFSATMPSWVKKLSRRYL-NNPLTIDLVGDQDEKLAEGIKLFAIPLTTTSK 324
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFR 406
++ D+I Y+ GG+TI+FT TK A +++ L + ALHGDI Q QRE TL GFR
Sbjct: 325 RTILSDLITVYAKGGKTIVFTRTKRDADEVSLALTTSIASEALHGDISQHQRERTLNGFR 384
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP- 465
GKF LVAT+VA+RGLDI +V LII E P D E ++HRSGRTGRAG G A++++
Sbjct: 385 QGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGNAILMFTTN 444
Query: 466 RKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNN 525
++ +V +ER+ G KFE I P ++ ++ T+ V I F AAE L
Sbjct: 445 QRRTVKSLERDVGCKFEFIGPPTMEEVLDSSAEHVIATLRGVHPESIQYFVPAAERL--- 501
Query: 526 SGLSAAELLAKALAKAVVSAFLFSSSSNSLSLTS 559
+ EL ALA A+ FS +S SL S
Sbjct: 502 ----SQELGPTALASALAHLSGFSQPPSSRSLIS 531
>gi|407397666|gb|EKF27840.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi marinkellei]
Length = 634
Score = 345 bits (884), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 202/492 (41%), Positives = 289/492 (58%), Gaps = 22/492 (4%)
Query: 76 NLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPI 135
N +EK + + K + G E + + S F + E LKS+GI +LFP+
Sbjct: 17 NPSAEKRARYETNEKDDKSGGGEGSKNDSTVTGRPFSDFDLLPTTVEALKSQGITTLFPV 76
Query: 136 QAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195
QA+T++ ++ GS+++ +ARTG GKTLAF +PI+E L K++ GR P+ ++ P
Sbjct: 77 QALTYEAIMKGSNVLVQARTGSGKTLAFGIPIVEQLAR-TMKSNNPPVRGRGPAAVIFCP 135
Query: 196 TRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
TRELA QV DV G + G LYGG Y QE L G+DVV+ TPGR KD +E+
Sbjct: 136 TRELAIQVR---DVIAGISKGFVVTALYGGVAYSTQERALYNGVDVVVATPGRAKDFLEK 192
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN-------KVQTLLFSATLPSW 307
+ +K LDEAD ML +GF +D+EL+L KV + N QTLLFSAT+P W
Sbjct: 193 RTLCFDRVKVVCLDEADHMLDIGFKDDIELLLQKVAEQNGSTEGNLNHQTLLFSATVPEW 252
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRT 366
V S F+ DK+ ID+VG M+A+ ++ C S S ++ D+++ YS GRT
Sbjct: 253 VHTCS--FIPKDKEFIDMVGQGTMRAAHTIKFYRRKCHFSEVSCMLADLVKVYSGRHGRT 310
Query: 367 IIFTETKESASQLA--DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLD 424
++FT TK+ L+ + ++ LHGD+QQ QRE T+ FR KF L+AT+VAARGLD
Sbjct: 311 LVFTNTKKDCHDLSINNTKLDSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLD 370
Query: 425 INDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS-VSKIERESGVKFEH 483
+ V L+IQC PP D++A+IHR+GRTGRAG GV V+L+ P+ V +IER + +KFE
Sbjct: 371 LPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVLLHQPKDEYIVERIERHAKIKFEV 430
Query: 484 ISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVV 543
+ AP +I +A +AAE + +V S F A ELL ++ A E+LA A+ AV+
Sbjct: 431 LPAPTRDEILRAVARDAAEDLARVERSATNLFMEQAAELLKDA--DATEILASAI--AVM 486
Query: 544 SAFLFSSSSNSL 555
S + S + L
Sbjct: 487 SGYTSSITRRGL 498
>gi|255543078|ref|XP_002512602.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223548563|gb|EEF50054.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 772
Score = 345 bits (884), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 186/442 (42%), Positives = 281/442 (63%), Gaps = 14/442 (3%)
Query: 95 AGVEEQERGES---EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVG 151
G E+ GES + A+S+ + L E L+ +GI LFPIQ L+G DL+
Sbjct: 103 GGYEDDGAGESLPDDDELAISKLGLPQRLVESLEKRGITHLFPIQRAVLVPALEGRDLIA 162
Query: 152 RARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211
RA+TG GKTLAF +PI++ +T + ++TG R P VLVL PTRELAKQV ++ +
Sbjct: 163 RAKTGTGKTLAFGIPIIKCITEDDKSSQRRTG--RLPRVLVLAPTRELAKQVEKEINE-- 218
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
A L++ C+YGG Y Q L +G+DVV+GTPGRI D I G++ L +++ VLDEAD
Sbjct: 219 SAPYLSTVCVYGGVSYITQRNALSRGVDVVVGTPGRIIDLINSGSLKLGEVEYLVLDEAD 278
Query: 272 EMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKM 331
+ML GF EDVE+IL + +K Q++LFSAT+P+WVK ++ K+L + + IDLVG+++
Sbjct: 279 QMLSFGFEEDVEVILENL--PSKRQSMLFSATMPTWVKKLARKYLDNPLQ-IDLVGDQEE 335
Query: 332 KASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARA 388
K + ++ + +++++ ++ D++ Y+ GG+TIIFT+TK A +++ +L + A
Sbjct: 336 KLAEGIKLYAISTNATSKRSILSDLVTVYAKGGKTIIFTQTKRDADEVSMVLTNSIASEA 395
Query: 389 LHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSG 448
LHGDI Q QRE TL GFR GKF LVAT+VA+RGLDI +V L+I E P D E ++HRSG
Sbjct: 396 LHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSG 455
Query: 449 RTGRAGNTGVAVMLY-DPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQV 507
RTGRAG G AV+++ ++ +V +ER+ G +FE +S P ++ +++ + T++ V
Sbjct: 456 RTGRAGKEGTAVLMFTSSQRRTVKSLERDVGCRFEFVSPPGTEEVLESSAEQVIATLSGV 515
Query: 508 SDSVIPAFKSAAEELLNNSGLS 529
+ F A+ L+ G S
Sbjct: 516 HPESVGFFTPTAQRLIEEQGTS 537
>gi|225450401|ref|XP_002278318.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic
[Vitis vinifera]
gi|296089875|emb|CBI39694.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 344 bits (882), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 183/422 (43%), Positives = 272/422 (64%), Gaps = 9/422 (2%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A+++ + L E L+ +GI LFPIQ L+G DL+ RA+TG GKTLAF +PI++
Sbjct: 117 ALAQLGLPPRLVESLEQRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPIIK 176
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
L+ K + + GR P VLVL PTRELAKQV ++ + A L++ C+YGG Y
Sbjct: 177 RLSEDDEKRTSQRRSGRLPRVLVLAPTRELAKQVEKE--IKESAPYLSTVCVYGGVSYIT 234
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q+ L +G+DVV+GTPGRI D I+ ++ L ++ VLDEAD+ML +GF EDVE+IL K+
Sbjct: 235 QQNALSRGVDVVVGTPGRIIDLIKGNSLKLGEVQNLVLDEADQMLAVGFEEDVEVILEKL 294
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
++ Q++LFSAT+P+WVK ++ K+L + TIDLVG+ K + ++ +P +++++
Sbjct: 295 --PSERQSMLFSATMPAWVKKLARKYL-DNPLTIDLVGDHDEKLAEGIKLYAIPTTATSK 351
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFR 406
++ D+I Y+ GG+TI+FT+TK A +++ L + ALHGDI Q QRE TL GFR
Sbjct: 352 RTILSDLITVYAKGGKTIVFTQTKRDADEVSMALTNSIASEALHGDISQHQRERTLNGFR 411
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DP 465
GKF LVAT+VAARGLDI +V LII E P D E ++HRSGRTGRAG G A++++
Sbjct: 412 QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS 471
Query: 466 RKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNN 525
++ +V +ER+ G KFE IS P ++ +++ + T+ V + F A++L+
Sbjct: 472 QRRTVKSLERDVGCKFEFISPPAIEEVLESSAEQVVATLNGVHPESVEFFTPTAQKLIEE 531
Query: 526 SG 527
G
Sbjct: 532 KG 533
>gi|320335085|ref|YP_004171796.1| DEAD/DEAH box helicase [Deinococcus maricopensis DSM 21211]
gi|319756374|gb|ADV68131.1| DEAD/DEAH box helicase domain protein [Deinococcus maricopensis DSM
21211]
Length = 604
Score = 344 bits (882), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 193/430 (44%), Positives = 270/430 (62%), Gaps = 22/430 (5%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
I+ L +L +GI PIQA + + G DL+GRARTG GKTLAF +P+++ L P
Sbjct: 7 IAPALAARLAERGILEASPIQAESLPHTMQGRDLIGRARTGTGKTLAFAIPVIDKLE--P 64
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
++ GR P L+L PTRELAKQV E+F A L + +YGGA Y QE L
Sbjct: 65 SRER-----GRLPRALILAPTRELAKQVAEEFK--KSAPELLTLTVYGGAAYGPQEKALY 117
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
G+DV++GTPGR+ DHIERGN+ L +++F +LDEADEML +GF + +E IL +
Sbjct: 118 GGVDVIVGTPGRVIDHIERGNLKLDAVQFAILDEADEMLSVGFADAIESILSATPETR-- 175
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QT+LFSATLP+ V I K+LK D +DLVG +M+A+ V+H+ + + R++V+ D
Sbjct: 176 QTMLFSATLPAGVTRIGNKYLK-DPLVVDLVGESRMQAAQTVQHLKVKVGRT-RTRVLAD 233
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFM 411
+ Y+ R I+FT TK +LA L A ALHGD+ QSQRE L FR+G+
Sbjct: 234 FLTIYNPE-RAIVFTRTKREVDELAMELIHRGLEAEALHGDLAQSQRERALGSFRAGRVR 292
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SV 470
LVAT+VAARGLDI ++ L++Q P+D E+Y+HRSGRTGRAG TG A+++Y R+ +
Sbjct: 293 VLVATDVAARGLDIPEIDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIVMYGEREGREL 352
Query: 471 SKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSA 530
+E ++GVKFE S P P ++ +A+ AA+ + +V + F + AE L + GL A
Sbjct: 353 RNLEYQTGVKFEERSIPTPKEVREASARAAADNVKKVDAEMAQPFMAEAERLFSELGLDA 412
Query: 531 AELLAKALAK 540
LA+ALAK
Sbjct: 413 ---LARALAK 419
>gi|407835252|gb|EKF99205.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
Length = 642
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 202/492 (41%), Positives = 290/492 (58%), Gaps = 22/492 (4%)
Query: 76 NLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPI 135
N +EK + + + G E G + S F + E LKS+GI +LFP+
Sbjct: 17 NPSAEKRARYETHESDDKSGGGEAPNNGSALAGRPFSDFDLLPNTVEALKSQGITALFPV 76
Query: 136 QAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195
QA+T++ ++ GS+++ +ARTG GKTLAF +PI+E L TK++++ GR P+ ++ P
Sbjct: 77 QALTYEAIMKGSNVLVQARTGSGKTLAFGIPIVEKLAR-MTKSNEQPVRGRGPAAVIFCP 135
Query: 196 TRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
TRELA QV DV G + G LYGG Y QE L G+DVV+ TPGR KD +E+
Sbjct: 136 TRELAIQVR---DVIAGISKGFVVTALYGGVAYSTQERALYSGVDVVVATPGRAKDFLEK 192
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV-------QTLLFSATLPSW 307
+ +K LDEAD ML +GF +D+EL+L KV + N QTLLFSAT+P W
Sbjct: 193 RTLCFDRVKVVCLDEADHMLDIGFKDDIELLLQKVAEQNGSTEGNPTHQTLLFSATVPEW 252
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRT 366
V S F+ K+ ID+VG M+A+ ++ C S S ++ D+++ YS GRT
Sbjct: 253 VHTCS--FIPRKKEFIDMVGQGTMRAANTIKFYRRKCHFSEVSCMLADLVKVYSGRHGRT 310
Query: 367 IIFTETKESASQLA--DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLD 424
++FT TK+ L+ + ++ LHGD+QQ QRE T+ FR KF L+AT+VAARGLD
Sbjct: 311 LVFTNTKKECHDLSINNTKLDSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLD 370
Query: 425 INDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS-VSKIERESGVKFEH 483
+ V L+IQC PP D++A+IHR+GRTGRAG GV V+L+ P+ V +IER + +KFE
Sbjct: 371 LPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVLLHQPKDEYIVERIERHAKIKFEV 430
Query: 484 ISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVV 543
+ AP +I +A +AAE + +V S F A ELL ++ A E+LA A+ AV+
Sbjct: 431 LPAPTRDEILRAVARDAAEDLARVERSATNLFMDQAAELLKDA--DATEILASAI--AVM 486
Query: 544 SAFLFSSSSNSL 555
S + S + L
Sbjct: 487 SGYTSSITRRGL 498
>gi|226468796|emb|CAX76426.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Schistosoma japonicum]
gi|226468798|emb|CAX76427.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Schistosoma japonicum]
Length = 622
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 192/432 (44%), Positives = 261/432 (60%), Gaps = 26/432 (6%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F I + ++L ++ I LFP+Q T+D + G D V ARTG GKTLAF LP++ L
Sbjct: 12 SNFNIDDAIIKRLHARNIFELFPVQFKTYDAISSGKDAVVLARTGTGKTLAFSLPLVNQL 71
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD---VYGGAVGLTSCCLYGGAPYH 228
++ + +P VLVL PTREL Q+ DF+ V+G + +TS +YGG PY
Sbjct: 72 IK------RQESFKPSPVVLVLAPTRELVTQIATDFESICVHG--IKVTS--VYGGVPYK 121
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q L+ G VV+G PGR+ D I++G + LSS++ VLDE D ML MGF +DVE IL
Sbjct: 122 PQCNALRNGTHVVVGAPGRVIDLIDKGILKLSSVQHVVLDEVDRMLDMGFSKDVEKILAD 181
Query: 289 V---EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
+ E + K QTLLFSAT+PSWV IS +L +D + L+ ++ KASTNV H+ L C
Sbjct: 182 IYNNETSKKPQTLLFSATMPSWVSDISRNYLSNDALHLSLIDEQETKASTNVTHLALLCP 241
Query: 346 SSARSQVIPDIIR--CYSSGGRTIIFTETKESASQLA--DLLP-GARALHGDIQQSQREV 400
+R+ + D+I+ C S R I+F E K+ A +LA ++P LHGD+ Q +RE
Sbjct: 242 YESRAATLSDVIKVYCKSRESRCIVFCERKKDADELAASSVMPTDCHVLHGDVPQDKREF 301
Query: 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV 460
L FR GK+ TL+ TNVAARGLD+ V L+IQC PPRDVE YIHRSGRTGRA +G ++
Sbjct: 302 VLQKFRDGKYRTLLTTNVAARGLDVPHVDLVIQCHPPRDVEDYIHRSGRTGRADRSGTSI 361
Query: 461 MLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFK--- 516
Y + +S +SKIE +G+ F ISAP DI A G E ++T + + S F
Sbjct: 362 CFYTYKERSMLSKIENMAGITFRRISAPTIHDITAAWGEEISKTFSTIPKSTWSTFMPLA 421
Query: 517 -SAAEELLNNSG 527
S A++L NS
Sbjct: 422 FSVADQLSQNSN 433
>gi|343172314|gb|AEL98861.1| DEAD-box ATP-dependent RNA helicase, partial [Silene latifolia]
Length = 782
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 194/461 (42%), Positives = 286/461 (62%), Gaps = 16/461 (3%)
Query: 100 QERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGK 159
Q +G S V++ + L + L +GI LFPIQ L+G D++ RA+TG GK
Sbjct: 116 QGKGLSADELEVAKLGLPQKLVDSLIKRGISQLFPIQRAVLVPALEGRDIIARAKTGTGK 175
Query: 160 TLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC 219
TLAF +PIL+ +T G + S GR P VLVL PTRELAKQV ++ A L +
Sbjct: 176 TLAFGIPILKRVTEGHDERSNLRRLGRLPKVLVLAPTRELAKQVEKEMKET--APYLNTV 233
Query: 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV 279
C+YGG Y +Q+ L +G+DVV+GTPGRI D I ++ L ++F VLDEAD+ML +GF
Sbjct: 234 CVYGGVSYTSQQSALSRGVDVVVGTPGRIIDLINGKSLKLGEVEFLVLDEADQMLAVGFE 293
Query: 280 EDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRH 339
EDVE+IL + + Q++LFSAT+P+W+K +S K+L + TIDLVG+ + K + ++
Sbjct: 294 EDVEVILETL--PKERQSMLFSATMPTWIKKLSRKYL-DNPLTIDLVGDREEKLAEGIKL 350
Query: 340 IVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQ----LADLLPGARALHGDIQQ 395
+ +++++ ++ D+I Y+ GG+TI+FT+TK A + L++ +P + ALHGDI Q
Sbjct: 351 YAISSTAASKRTMLSDVITVYAKGGKTIVFTQTKRDADEVSLALSNSIP-SEALHGDISQ 409
Query: 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN 455
QRE TL GFR GKF LVAT+VA+RGLDI +V L++ E P D E ++HRSGRTGRAG
Sbjct: 410 HQRERTLNGFRQGKFSVLVATDVASRGLDIPNVDLVVHYEMPNDPETFVHRSGRTGRAGK 469
Query: 456 TGVAVMLYDP-RKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPA 514
G A+++Y ++ +V +ER+ G FE++ AP ++ +++ + T+ V I
Sbjct: 470 EGTALLMYTSNQRRTVRSLERDVGCHFEYVGAPSVEEVLESSADQVVATLRGVHPDSIKF 529
Query: 515 FKSAAEELLNNSGLSAAELLAKALAKAVVSAFLFSSSSNSL 555
F A++LL G A LA A+A +S F S+ SL
Sbjct: 530 FTPTAQKLLEEQGTGA---LAAAIAH--LSGFSQPPSAKSL 565
>gi|357122982|ref|XP_003563192.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like isoform 1 [Brachypodium distachyon]
Length = 769
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 199/491 (40%), Positives = 291/491 (59%), Gaps = 20/491 (4%)
Query: 75 VNLKSEKEKKKKKKAKVEPEAGVEEQERG--ESEHPNAVSRFRISVPLREKLKSKGIESL 132
+ L S+ E + E GV + G E A++R + L L+ +GI L
Sbjct: 58 LQLGSDDEDDEDAYGSDGQEGGVAGEVEGFQGDEEELAIARLGLPDQLVATLEKRGITHL 117
Query: 133 FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLV 192
FPIQ L+G DL+ RA+TG GKTLAF +P+++ + + G GR P LV
Sbjct: 118 FPIQRAVLIPALEGRDLIARAKTGTGKTLAFGIPMIKQIIE--QDEGRSLGRGRIPRALV 175
Query: 193 LLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI 252
L PTRELAKQV ++ + A L++ C+YGG Y+ Q+ L +G+DVV+GTPGR+ D I
Sbjct: 176 LAPTRELAKQVEKE--IMESAPKLSTVCVYGGVSYNVQQNALSRGVDVVVGTPGRLIDLI 233
Query: 253 ERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 312
G++ L +++ VLDEAD+ML +GF EDVE IL ++ + Q++LFSAT+PSWVK +S
Sbjct: 234 NGGSLQLGEVRYLVLDEADQMLAVGFEEDVETILQQL--PAERQSMLFSATMPSWVKKLS 291
Query: 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTET 372
++L ++ TIDLVG++ K + ++ +P + +++ ++ D+I Y+ GG+TI+FT T
Sbjct: 292 RRYL-NNPLTIDLVGDQDEKLAEGIKLYAIPLTVTSKRTILSDLITVYAKGGKTIVFTRT 350
Query: 373 KESASQLADLLPGA---RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQ 429
K A +++ L + ALHGDI Q QRE TL GFR GKF LVAT+VA+RGLDI +V
Sbjct: 351 KRDADEVSLALTASIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVD 410
Query: 430 LIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DPRKSSVSKIERESGVKFEHISAPQ 488
LII E P D E ++HRSGRTGRAG G A++++ + ++ +V +ER+ G +FE I P
Sbjct: 411 LIIHYELPNDPETFVHRSGRTGRAGKAGNAILMFTNNQRRTVKSLERDVGCRFEFIGPPT 470
Query: 489 PADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVVSAFLF 548
++ ++ T+ V I F AAE L + EL ALA A+ F
Sbjct: 471 MEEVLDSSAEHVIATLRGVHQESIQYFIPAAERL-------SEELGPNALATALAHLSGF 523
Query: 549 SSSSNSLSLTS 559
S +S SL S
Sbjct: 524 SQPPSSRSLIS 534
>gi|357122984|ref|XP_003563193.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like isoform 2 [Brachypodium distachyon]
Length = 749
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 199/491 (40%), Positives = 291/491 (59%), Gaps = 20/491 (4%)
Query: 75 VNLKSEKEKKKKKKAKVEPEAGVEEQERG--ESEHPNAVSRFRISVPLREKLKSKGIESL 132
+ L S+ E + E GV + G E A++R + L L+ +GI L
Sbjct: 58 LQLGSDDEDDEDAYGSDGQEGGVAGEVEGFQGDEEELAIARLGLPDQLVATLEKRGITHL 117
Query: 133 FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLV 192
FPIQ L+G DL+ RA+TG GKTLAF +P+++ + + G GR P LV
Sbjct: 118 FPIQRAVLIPALEGRDLIARAKTGTGKTLAFGIPMIKQIIE--QDEGRSLGRGRIPRALV 175
Query: 193 LLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI 252
L PTRELAKQV ++ + A L++ C+YGG Y+ Q+ L +G+DVV+GTPGR+ D I
Sbjct: 176 LAPTRELAKQVEKE--IMESAPKLSTVCVYGGVSYNVQQNALSRGVDVVVGTPGRLIDLI 233
Query: 253 ERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 312
G++ L +++ VLDEAD+ML +GF EDVE IL ++ + Q++LFSAT+PSWVK +S
Sbjct: 234 NGGSLQLGEVRYLVLDEADQMLAVGFEEDVETILQQL--PAERQSMLFSATMPSWVKKLS 291
Query: 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTET 372
++L ++ TIDLVG++ K + ++ +P + +++ ++ D+I Y+ GG+TI+FT T
Sbjct: 292 RRYL-NNPLTIDLVGDQDEKLAEGIKLYAIPLTVTSKRTILSDLITVYAKGGKTIVFTRT 350
Query: 373 KESASQLADLLPGA---RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQ 429
K A +++ L + ALHGDI Q QRE TL GFR GKF LVAT+VA+RGLDI +V
Sbjct: 351 KRDADEVSLALTASIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVD 410
Query: 430 LIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DPRKSSVSKIERESGVKFEHISAPQ 488
LII E P D E ++HRSGRTGRAG G A++++ + ++ +V +ER+ G +FE I P
Sbjct: 411 LIIHYELPNDPETFVHRSGRTGRAGKAGNAILMFTNNQRRTVKSLERDVGCRFEFIGPPT 470
Query: 489 PADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVVSAFLF 548
++ ++ T+ V I F AAE L + EL ALA A+ F
Sbjct: 471 MEEVLDSSAEHVIATLRGVHQESIQYFIPAAERL-------SEELGPNALATALAHLSGF 523
Query: 549 SSSSNSLSLTS 559
S +S SL S
Sbjct: 524 SQPPSSRSLIS 534
>gi|148906285|gb|ABR16298.1| unknown [Picea sitchensis]
Length = 802
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 189/423 (44%), Positives = 265/423 (62%), Gaps = 11/423 (2%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
+S +S L E L ++GI LFPIQ L+G DL+GRA+TG GKTLAF +PI+E
Sbjct: 146 LSGLNLSQELVEALANRGITHLFPIQRAVLVPALEGRDLIGRAKTGTGKTLAFGIPIIER 205
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
LT + R P VLVL PTRELAKQV ++F A L++ C+YGG Y +Q
Sbjct: 206 LTKDNKENKLLRQSRRLPRVLVLAPTRELAKQVEKEFKE--SAPFLSTACIYGGVSYVSQ 263
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
+ L +G+DVV+GTPGRI D + ++ L+ ++F VLDEAD+ML +GF EDVE+IL +
Sbjct: 264 QNALARGVDVVVGTPGRIIDLVNSKSLKLNEVQFLVLDEADQMLAVGFEEDVEIILDNL- 322
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN--EKMKASTNVRHIVLPCSSSA 348
+ Q++LFSAT+P WVK +S K L ++ TIDLVG EK+ + + SS++
Sbjct: 323 -PAERQSMLFSATMPGWVKKLSRKHL-NNPMTIDLVGENEEKLAEGIKLYAVATTTSSNS 380
Query: 349 RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGF 405
+ ++ D+I ++ GG+TI+FT+TK A +++ L ALHGDI Q QRE TLAGF
Sbjct: 381 KRSILGDLITVFAKGGKTIVFTQTKRDADEISLGLSSTIACEALHGDISQHQRERTLAGF 440
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
R GKF LVAT+VAARGLDI +V L+I E P D E ++HRSGRTGRAG G+A+++Y
Sbjct: 441 REGKFSALVATDVAARGLDITNVDLVIHYEFPNDPETFVHRSGRTGRAGKEGIAILMYPS 500
Query: 466 R-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLN 524
K V +E E G +FE+I+ P+ D+ + + A+ + V +I F A +L+
Sbjct: 501 NGKRKVRSLEHEVGCRFEYINPPRQEDVLETSTQHVAKALGSVHPELINIFLPTANKLME 560
Query: 525 NSG 527
G
Sbjct: 561 EKG 563
>gi|357511641|ref|XP_003626109.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|87240993|gb|ABD32851.1| Helicase, C-terminal; Zinc finger, CCHC-type; GUCT [Medicago
truncatula]
gi|355501124|gb|AES82327.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 753
Score = 342 bits (878), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 183/421 (43%), Positives = 269/421 (63%), Gaps = 11/421 (2%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
+S+ + L + L+ +GI LFPIQ L+G D++ RA+TG GKTLAF +PI+
Sbjct: 110 ISKLDLPSQLVDSLRDRGITQLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIING 169
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
L +G + S R P LVL PTRELAKQV ++ + A L + C+YGG Y Q
Sbjct: 170 LDDG--QDSGPYSRRRLPRALVLAPTRELAKQVEKE--IKESAPYLKTVCIYGGVSYVTQ 225
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
+ L +G+DVV+GTPGR+ D I + LS +++ VLDEAD+ML +GF EDVE+IL K+
Sbjct: 226 QSALSRGVDVVVGTPGRLIDLINGNTLKLSEVEYLVLDEADQMLAVGFEEDVEVILEKL- 284
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
K Q++LFSAT+PSWVK ++ K+L ++ TIDLVG+E+ K + ++ + +S+++
Sbjct: 285 -PAKRQSMLFSATMPSWVKKLARKYL-NNPLTIDLVGDEEEKLAEGIKLYAISATSTSKR 342
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFRS 407
++ D+I Y+ GG+TI+FT+TK A +++ L + ALHGDI Q QRE TL GFR
Sbjct: 343 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSITSEALHGDISQHQRERTLNGFRQ 402
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD-PR 466
GKF LVAT+VA+RGLDI +V LII E P D E ++HRSGRTGRAG G A++++ +
Sbjct: 403 GKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKLGTAILMFTGSQ 462
Query: 467 KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNS 526
+ +V +ER+ G KFE ++AP D+ +++ + T+ V I F A++L+
Sbjct: 463 RRTVRSLERDVGCKFEFVNAPSVEDVLESSAEQVVVTLNGVHPESIAFFTPTAQKLIEEK 522
Query: 527 G 527
G
Sbjct: 523 G 523
>gi|224124522|ref|XP_002330044.1| predicted protein [Populus trichocarpa]
gi|222871469|gb|EEF08600.1| predicted protein [Populus trichocarpa]
Length = 775
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 184/443 (41%), Positives = 279/443 (62%), Gaps = 16/443 (3%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
++ EP + E E VS+ + L + L+++GI LFPIQ L+G D
Sbjct: 120 SETEPSSNTSEDELD-------VSKLGLPHRLVQTLQNRGITHLFPIQRAVLIPALEGRD 172
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208
L+ RA+TG GKTLAF +PI++ LT + GR P VLVL PTRELAKQV ++
Sbjct: 173 LIARAKTGTGKTLAFGIPIIKRLTEDAELRGSQRRTGRLPKVLVLAPTRELAKQVEKE-- 230
Query: 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268
+ A L+S C+YGG Y Q+ L +G+DVV+GTPGRI D ++ ++ L +++ VLD
Sbjct: 231 IKESAPYLSSVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLLKGNSLKLGEVEYLVLD 290
Query: 269 EADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
EAD+ML GF EDVE+IL + +K Q++LFSAT+P+WVK ++ K+L + + IDLVG+
Sbjct: 291 EADQMLSFGFEEDVEVILENL--PSKRQSMLFSATMPTWVKKLARKYLDNPLQ-IDLVGD 347
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---G 385
++ K + ++ L +++++ ++ D++ Y+ GG+TIIFT+TK A +++ L
Sbjct: 348 QEEKLAEGIKLYALSATAASKRTILSDLVTVYAKGGKTIIFTQTKRDADEVSMALTNTIA 407
Query: 386 ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIH 445
+ ALHGDI Q QRE TL GFR GKF LVAT+VA+RGLDI +V LII E P D E ++H
Sbjct: 408 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDAETFVH 467
Query: 446 RSGRTGRAGNTGVAVMLY-DPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETI 504
RSGRTGRAG G A++++ ++ +V +ER++G KFE +S P ++ +++ + T+
Sbjct: 468 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDAGCKFEFVSPPAIEEVLESSAEQVVATL 527
Query: 505 TQVSDSVIPAFKSAAEELLNNSG 527
+ V + F A++L+ G
Sbjct: 528 SGVHPESVEFFTPTAQKLIEEQG 550
>gi|218194025|gb|EEC76452.1| hypothetical protein OsI_14162 [Oryza sativa Indica Group]
Length = 779
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 200/464 (43%), Positives = 283/464 (60%), Gaps = 30/464 (6%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFD--------------MVLDGSDLVGRART 155
A++R + L L+ +GI LFPIQ LDG DL+ RA+T
Sbjct: 112 AIARLGLPEQLVSTLEKRGITHLFPIQVSVLGGDSEGIGVSRAVLIPALDGRDLIARAKT 171
Query: 156 GQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG 215
G GKTLAF +P+++ L S + G R P VLVL PTRELAKQV ++ + A
Sbjct: 172 GTGKTLAFGIPMIKQLMEEDDGRSVRRG--RIPRVLVLAPTRELAKQVEKE--IKESAPK 227
Query: 216 LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275
L++ C+YGG Y+ Q+ L +G+DVV+GTPGRI D I G++ L +K+ VLDEAD+ML
Sbjct: 228 LSTVCVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLA 287
Query: 276 MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335
+GF EDVE IL ++ + Q++LFSAT+P WVK +S ++L ++ TIDLVG++ K +
Sbjct: 288 VGFEEDVETILQQL--PAERQSMLFSATMPGWVKKLSRRYL-NNPLTIDLVGDQDEKLAE 344
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGD 392
++ +P +S+++ V+ D+I Y+ GG+TI+FT+TK A +++ L + ALHGD
Sbjct: 345 GIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGD 404
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
I Q QRE TL GFR GKF LVAT+VAARGLDI +V LII E P D E ++HRSGRTGR
Sbjct: 405 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 464
Query: 453 AGNTGVAVMLY-DPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSV 511
AG G A++++ + ++ +V +ER+ G +F+ IS P D+ +++ T+ V
Sbjct: 465 AGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTES 524
Query: 512 IPAFKSAAEELLNNSGLSAAELLAKALAKAVVSAFLFSSSSNSL 555
I F AAE L G +A LA ALA +S F SS SL
Sbjct: 525 IQYFIPAAERLQEELGPNA---LASALAH--LSGFSQPPSSRSL 563
>gi|343172316|gb|AEL98862.1| DEAD-box ATP-dependent RNA helicase, partial [Silene latifolia]
Length = 782
Score = 340 bits (873), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 193/461 (41%), Positives = 285/461 (61%), Gaps = 16/461 (3%)
Query: 100 QERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGK 159
Q +G S V++ + L + L +GI LFPIQ L+G D++ RA+TG GK
Sbjct: 116 QGKGLSADELEVAKLGLPQKLIDSLIKRGISQLFPIQRAVLVPALEGRDIIARAKTGTGK 175
Query: 160 TLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC 219
TLAF +PIL+ +T G + S GR P VLVL PTRELAKQV ++ A L +
Sbjct: 176 TLAFGIPILKRVTEGHDERSNLRRLGRLPKVLVLAPTRELAKQVEKEMKET--APYLNTV 233
Query: 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV 279
C+YGG Y +Q+ L +G+DVV+GTPGRI D + ++ L ++F VLDEAD+ML +GF
Sbjct: 234 CVYGGVSYTSQQSALSRGVDVVVGTPGRIIDLVNGNSLKLGEVEFLVLDEADQMLAVGFE 293
Query: 280 EDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRH 339
EDVE+IL K+ + Q++LFSAT+P+W+K +S K+L + TIDLVG+ + K + ++
Sbjct: 294 EDVEVILEKL--PKERQSMLFSATMPTWIKKLSRKYL-DNPLTIDLVGDREEKLAEGIKL 350
Query: 340 IVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQ----LADLLPGARALHGDIQQ 395
+ +++++ ++ D+I Y+ GG+TI+FT+TK A + L++ +P + ALHGDI Q
Sbjct: 351 YAISSTAASKRTMLSDVITVYAKGGKTIVFTQTKRDADEVSLALSNSIP-SEALHGDISQ 409
Query: 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN 455
QRE TL GFR GKF LVAT+VA+RGLDI +V L++ E P D E ++HRSGRTGRAG
Sbjct: 410 HQRERTLNGFRQGKFSVLVATDVASRGLDIPNVDLVVHYEMPNDPETFVHRSGRTGRAGK 469
Query: 456 TGVAVMLYDP-RKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPA 514
G A+++Y ++ +V +ER+ G F ++ AP ++ ++ + T+ V I
Sbjct: 470 EGTALLMYTSNQRRTVRSLERDVGCHFGYVGAPSVEEVLVSSADQVVATLRGVHPESIKF 529
Query: 515 FKSAAEELLNNSGLSAAELLAKALAKAVVSAFLFSSSSNSL 555
F A++LL G A LA A+A +S F S+ SL
Sbjct: 530 FTPTAQKLLEEQGTGA---LAAAIAH--LSGFSQPPSAKSL 565
>gi|386857046|ref|YP_006261223.1| DEAD/DEAH box helicase [Deinococcus gobiensis I-0]
gi|380000575|gb|AFD25765.1| DEAD/DEAH box helicase-like protein [Deinococcus gobiensis I-0]
Length = 599
Score = 338 bits (867), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 194/429 (45%), Positives = 273/429 (63%), Gaps = 23/429 (5%)
Query: 118 VP-LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPT 176
VP L +L +GI PIQA + L G DL+GRARTG GKTLAF LPI+++L P+
Sbjct: 8 VPELAARLAERGITEASPIQAESLPHTLQGRDLIGRARTGTGKTLAFALPIIQNLE--PS 65
Query: 177 KASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKK 236
+ R P +V+ PTRELAKQV ++F G LT+ +YGGA Y QE L++
Sbjct: 66 RERS-----RLPRAIVVAPTRELAKQVADEFSKSG--ANLTTVTVYGGASYAPQENALRR 118
Query: 237 GIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQ 296
G+DVV+GTPGR+ DH+ERGN+DLS++++ VLDEADEML +GF + +E IL K + Q
Sbjct: 119 GVDVVVGTPGRLIDHLERGNLDLSAVQYAVLDEADEMLSVGFADAIETILEKTPEGR--Q 176
Query: 297 TLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDI 356
T+LFSATL + +S K+L+ D T+D+VG K +A+ V H+ + S R++V+ D+
Sbjct: 177 TMLFSATLNGDINRLSRKYLR-DPLTVDMVGEGKSQAAQTVEHLKVRVGRS-RTRVLADL 234
Query: 357 IRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMT 412
+ Y+ + I+FT TK A +LA+ L + ALHGD+ Q+QRE L FRSG+
Sbjct: 235 LTVYNPE-KAIVFTRTKREADELANELIHRGIESEALHGDLAQTQRERALGAFRSGRVGV 293
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVS 471
LVAT+VAARGLDI +V L++Q P+D E+Y+HRSGRTGRAG TG A+++Y R +S
Sbjct: 294 LVATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIIMYGDRDGREMS 353
Query: 472 KIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAA 531
+ER +GV+F P P ++A A+ +A+ + +V F+ AE L + GL A
Sbjct: 354 GLERITGVRFTERPLPTPKEVASASARSSADLVRRVDSGAAQGFQEEAERLFSELGLEA- 412
Query: 532 ELLAKALAK 540
L +ALAK
Sbjct: 413 --LTRALAK 419
>gi|323509827|dbj|BAJ77806.1| cgd6_4860 [Cryptosporidium parvum]
Length = 390
Score = 337 bits (865), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 178/381 (46%), Positives = 253/381 (66%), Gaps = 25/381 (6%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ESE ++ RF +S RE L+S+GIE LFPIQA +F+ + D++G+A+TG GKTLAF
Sbjct: 9 ESEVDGSIDRFPLSDESREILRSRGIERLFPIQAQSFESIYGKKDVLGKAKTGTGKTLAF 68
Query: 164 VLPILESLTN-GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLY 222
VLP++E L G +K +GR P VLVLLPTRELA+QV +F++ G C +Y
Sbjct: 69 VLPVIERLLKKGKFDPNK---HGRRPLVLVLLPTRELAQQVSNEFELMKGKDRYKVCSVY 125
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG+P + Q ++KKG+D+V+G PGR+ D IERG +++S + LDEAD+ML MGF E V
Sbjct: 126 GGSPEYPQIQEIKKGVDIVVGCPGRVLDFIERGILNVSKISVLTLDEADKMLEMGFKETV 185
Query: 283 ELILGKVED----------ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLV-----G 327
+ I+ V NK Q LLFSAT+P WVK+I T+ + SD T+D+ G
Sbjct: 186 DKIIDCVRKETGDGETHSRQNKFQVLLFSATVPPWVKNILTEIMSSDTVTVDVTHISIHG 245
Query: 328 NEKMKAS--TNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLA---D 381
E+ +A+ + +RH+ + C+ R+ ++ DII Y+ G+ IIFTETK++A+++A +
Sbjct: 246 EEEDEAAARSRIRHLAIQCAYPQRTGLLGDIITMYAGINGKCIIFTETKQTANEIAMRSE 305
Query: 382 LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVE 441
+ + LHGDIQQ+QRE+ L F+ G++ LVAT+VAARGL I+DV ++IQ PPRD++
Sbjct: 306 ISKMCQVLHGDIQQNQREIALQAFKEGRYRCLVATDVAARGLHIDDVAVVIQLAPPRDID 365
Query: 442 AYIHRSGRTGRAGNTGVAVML 462
YIHRSGRTGRAG G A+M
Sbjct: 366 TYIHRSGRTGRAGKFGTAIMF 386
>gi|403274099|ref|XP_003928826.1| PREDICTED: nucleolar RNA helicase 2 [Saimiri boliviensis
boliviensis]
Length = 840
Score = 337 bits (865), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 191/445 (42%), Positives = 265/445 (59%), Gaps = 40/445 (8%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK +G+ LFPIQA TF V G D
Sbjct: 274 SEIEQEIPVEQKE-------GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKD 326
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L G + K+ GR P V VL R LA QV +DF
Sbjct: 327 LIAQARTGTGKTFSFAIPLIEKLL-GELQDRKR---GRPPQVTVL-NIRALANQVSKDFS 381
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY AQ +++ GID+++GTPGRIKDHI+ G +DL+ L
Sbjct: 382 DI---TKKLSVACFYGGTPYGAQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLXXXXX 438
Query: 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVG 327
+ QTLLFSAT P WV +++ K++KS + +DL+G
Sbjct: 439 XXX-------------------XSEDNPQTLLFSATCPHWVFNVAKKYMKSAYEQVDLIG 479
Query: 328 NEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD---LL 383
+ K + V H+ + C + RS VI D+IR Y GRTIIF ETK+ A +L+ +
Sbjct: 480 KKTQKTAITVEHLAIKCHWTQRSGVIGDVIRVYGGHQGRTIIFCETKKEAQELSQNSAIK 539
Query: 384 PGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAY 443
A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DVE+Y
Sbjct: 540 QDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESY 599
Query: 444 IHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAE 502
IHRSGRTGRAG TGV + Y ++ + ++E+++G+KF+ I P +I KA+ +A
Sbjct: 600 IHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGIPSATEIIKASSKDAIR 659
Query: 503 TITQVSDSVIPAFKSAAEELLNNSG 527
+ V + I FK +AE+L+ G
Sbjct: 660 LLDSVPPTAISHFKQSAEKLIEEKG 684
>gi|168019686|ref|XP_001762375.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686453|gb|EDQ72842.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 689
Score = 337 bits (864), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 198/445 (44%), Positives = 276/445 (62%), Gaps = 12/445 (2%)
Query: 99 EQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQG 158
+ E + E AV+ I + + L +GIE LFPIQ D + G DL+GRA+TG G
Sbjct: 37 DNESVDDEDELAVANLGIPQAVVDALAKRGIEKLFPIQRAVLDPAMQGRDLIGRAKTGTG 96
Query: 159 KTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTS 218
KTLAF +PI+ ++ GRAP LVL PTRELAKQV +F A L++
Sbjct: 97 KTLAFGIPIIHNILKAHEADRTSRRSGRAPRALVLAPTRELAKQVEREF--MESAPMLST 154
Query: 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF 278
C+YGG Q+ +L++G+DV +GTPGRI D IER ++ L + + VLDEAD+ML +GF
Sbjct: 155 VCVYGGVSITTQQRQLQRGVDVAVGTPGRIIDLIERRSLSLRDVSYLVLDEADQMLAVGF 214
Query: 279 VEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR 338
EDVE IL ++ + Q++LFSAT+P+WVK +S K+LKS TIDLVG+ K + ++
Sbjct: 215 EEDVERILEQMPEER--QSMLFSATMPNWVKKLSKKYLKS-PLTIDLVGDSNEKLAEGIK 271
Query: 339 HIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQ 395
+ + +A+ V+ D+I + S G+TI+FT+TK A +A +L G ALHGDI Q
Sbjct: 272 MLAVCIPPAAKRTVLNDLISVHGSVGKTIVFTQTKRDADDVASVLGRTLGCEALHGDITQ 331
Query: 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN 455
SQRE TLA FR G+F LVAT+VAARGLDI +V L++ E P D E ++HRSGRTGRAG
Sbjct: 332 SQRERTLASFREGRFSVLVATDVAARGLDIPNVDLVVHYEIPNDPETFVHRSGRTGRAGK 391
Query: 456 TGVAVMLY-DPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPA 514
G A++++ + +K ++ IE + G KF +S PQ ++ +A+ A I +V+ V
Sbjct: 392 DGTAILMFSENQKRTMRNIEMDVGCKFTLMSPPQMEEVLQASSKAAKAVIQRVNPDVANV 451
Query: 515 FKSAAEELLNNSGLSAAELLAKALA 539
F S AE+LL G A A ALA
Sbjct: 452 FLSTAEKLLEKEGPGA---FAAALA 473
>gi|297830946|ref|XP_002883355.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp.
lyrata]
gi|297329195|gb|EFH59614.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp.
lyrata]
Length = 612
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 182/391 (46%), Positives = 258/391 (65%), Gaps = 14/391 (3%)
Query: 99 EQERGESEHPN-AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQ 157
E+ G+SE A+S IS + + L SKGIE LFPIQ + ++G D++GRARTG
Sbjct: 90 ERRVGDSESDGLAISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGT 149
Query: 158 GKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLT 217
GKTLAF +PI++ + K + K G GR P LVL PTRELA+QV ++F A L
Sbjct: 150 GKTLAFGIPIIDKII----KYNAKHGRGRNPLCLVLAPTRELARQVEKEFRE--SAPSLD 203
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
+ CLYGG P Q +L G+DV +GTPGR+ D ++RG ++LS ++F VLDEAD+ML++G
Sbjct: 204 TICLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVG 263
Query: 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337
F EDVE+IL K+ + K Q+++FSAT+PSW++ ++ K+L ++ TIDLVG+ K + +
Sbjct: 264 FAEDVEIILEKLPE--KRQSMMFSATMPSWIRSLTKKYL-NNPLTIDLVGDSDQKLADGI 320
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQ 394
+ S R+ +I ++ ++ GG+ I+FT+TK A +L+ L + ALHGDI
Sbjct: 321 TTYSILADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALARSFKCEALHGDIS 380
Query: 395 QSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
QSQRE TLAGFR G F LVAT+VAARGLD+ +V LII E P + E ++HR+GRTGRAG
Sbjct: 381 QSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAG 440
Query: 455 NTGVAVMLYDPRKS-SVSKIERESGVKFEHI 484
G A+++Y +S +V IERE G +F +
Sbjct: 441 KKGSAILIYSQDQSRAVKIIEREVGSRFTEL 471
>gi|302821639|ref|XP_002992481.1| hypothetical protein SELMODRAFT_30997 [Selaginella moellendorffii]
gi|300139683|gb|EFJ06419.1| hypothetical protein SELMODRAFT_30997 [Selaginella moellendorffii]
Length = 641
Score = 335 bits (858), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 188/436 (43%), Positives = 272/436 (62%), Gaps = 13/436 (2%)
Query: 96 GVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRART 155
GV+ + + + E A++ +S + L +GI LFPIQ F + G DL+ RA+T
Sbjct: 10 GVQGESKADDEL--AIAGLGVSQEIVGHLADRGITHLFPIQRAVFQPAMKGVDLIARAKT 67
Query: 156 GQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG 215
G GKTLAF +PI++ + +K+ +++ G P+ LVL PTRELAKQV +F G
Sbjct: 68 GTGKTLAFGIPIMDRIYRSRSKSQRRSFRG--PAALVLAPTRELAKQVETEFMESGKE-- 123
Query: 216 LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275
L + C+YGG +Q+ L +G+DV +GTPGRI D +E+G +DLS ++ VLDEAD+ML
Sbjct: 124 LATVCVYGGVSIMSQKRLLSRGVDVAVGTPGRIIDLLEQGCLDLSQVECMVLDEADQMLA 183
Query: 276 MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335
+GF EDVE I+ ++ + K Q +LFSAT+P WV+ +S KFL + TIDLVG K +
Sbjct: 184 VGFEEDVEKIMEQLPE--KRQNMLFSATMPGWVQKLSRKFL-NKPLTIDLVGESDEKLAE 240
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGD 392
++ + S +A+ +++ D+I Y GG+TI+FT+TK A +++ + G ALHGD
Sbjct: 241 GIKLYAVQTSQAAKRKILSDVITVYGKGGKTIVFTQTKRDAEEVSMAMNRTLGCEALHGD 300
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
I Q QRE TLA FR G+F+ LVAT+VAARGLDI DV LII + PRD E ++HRSGRTGR
Sbjct: 301 IAQFQREKTLAAFREGRFLILVATDVAARGLDITDVDLIIHYDLPRDSETFVHRSGRTGR 360
Query: 453 AGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSV 511
AG G A++ + P++ + K ER+ G F+ S P ++ A+ +A E I V +
Sbjct: 361 AGKDGSALVFFSPQERRILKHFERQVGCSFQFKSMPHFDEVLAASSSQAVELIKGVHPDL 420
Query: 512 IPAFKSAAEELLNNSG 527
F + AE+LL G
Sbjct: 421 KQVFMATAEKLLEEHG 436
>gi|224124506|ref|XP_002330040.1| predicted protein [Populus trichocarpa]
gi|222871465|gb|EEF08596.1| predicted protein [Populus trichocarpa]
Length = 735
Score = 335 bits (858), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 181/445 (40%), Positives = 277/445 (62%), Gaps = 16/445 (3%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
++ EP + E E +S+ + L + L+++GI LFPIQ L+G D
Sbjct: 83 SETEPNSNTSEDELD-------ISKLGLPQRLVQTLQNRGITHLFPIQRAVLIPTLEGRD 135
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208
L+ RA+TG GKTLAF +PI++ LT + GR P VLVL PTRELAKQV ++
Sbjct: 136 LIARAKTGTGKTLAFGIPIIKRLTEDAELRGSQRRTGRLPKVLVLAPTRELAKQVEKE-- 193
Query: 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268
+ A L++ C+YGG Y Q+ L +G+DVV+GTPGRI D ++ ++ L +++ VLD
Sbjct: 194 IKESAPYLSTVCVYGGVSYATQQNALSRGVDVVVGTPGRIIDLLKGNSLKLGEVEYLVLD 253
Query: 269 EADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
EAD+ML GF EDVE+IL + +K Q++LFSAT+P+WVK ++ K+L + + IDLVG+
Sbjct: 254 EADQMLSFGFEEDVEVILESL--PSKRQSMLFSATMPTWVKKLARKYLDNPLQ-IDLVGD 310
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---G 385
+ K + ++ + +++++ ++ D++ Y+ G +TIIFT TK A +++ L
Sbjct: 311 REEKLAEGIKLYAISTTATSKRTILSDLVTVYAKGEKTIIFTRTKRDADEVSMALTQSIA 370
Query: 386 ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIH 445
+ ALHGDI Q QRE TL GFR GKF LVAT+VA+RGLDI +V LII E P D E ++H
Sbjct: 371 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVH 430
Query: 446 RSGRTGRAGNTGVAVMLY-DPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETI 504
RSGRTGRAG G A++++ + ++ +V +ER++G KFE +S P ++ +++ + T+
Sbjct: 431 RSGRTGRAGKEGTAILMFTNSQRRTVRSLERDAGCKFEFVSPPAIEELLESSTEQVVATL 490
Query: 505 TQVSDSVIPAFKSAAEELLNNSGLS 529
V + F A++L+ G S
Sbjct: 491 NGVHPESVEFFTPTAQKLIEEQGTS 515
>gi|340502033|gb|EGR28753.1| hypothetical protein IMG5_169500 [Ichthyophthirius multifiliis]
Length = 727
Score = 334 bits (857), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 183/457 (40%), Positives = 266/457 (58%), Gaps = 22/457 (4%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT-NGPTKASKKT 182
L + I LFPIQ F + G D++G+ RTG GKTL + LP++E L +G K+
Sbjct: 78 LNKRNITYLFPIQEHCFKAIQAGKDVIGKDRTGSGKTLGYSLPLIEKLREDGFFGVIKRR 137
Query: 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVV 241
++P VL+L+PTREL QV + + +YGG Q +L+ G ++
Sbjct: 138 ---QSPYVLILVPTRELCIQVANEISSLKHSDNEFRVLQIYGGTDIREQTNQLRDGCEIA 194
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN------KV 295
+GTPGRI D +RGN+ LS+LK +LDEAD+ML GF +D+E I + ++ +
Sbjct: 195 VGTPGRIIDQFDRGNLILSNLKTVILDEADQMLNFGFQDDIEKIFKNIVESRESLGLPRT 254
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKT-IDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
Q LLFSAT+PSWV IS K+L+ IDLV N K S V H+ + C R++ I
Sbjct: 255 QNLLFSATVPSWVHEISRKYLQEQNIVMIDLVRNNDNKTSQGVTHLAINCPFYQRTEAIG 314
Query: 355 DIIRCYSSGG--RTIIFTETKESASQL---ADLLPGARALHGDIQQSQREVTLAGFRSGK 409
D+I CY G R IIF ETK A+++ A++ + LHGDI Q QRE+T GFR GK
Sbjct: 315 DVILCYGGGAHSRVIIFCETKNEANEIMLKANIKQDLQVLHGDIPQKQREITFQGFREGK 374
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS 469
F LVATNVA+RGLDI +V LI+Q EPP++++ YIHR+GRTGRAG TGV + + ++
Sbjct: 375 FKCLVATNVASRGLDIPEVDLIVQLEPPKELDTYIHRAGRTGRAGKTGVCITFFTKKQVG 434
Query: 470 -VSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGL 528
+ +IE++ +K + + APQP DI KA+ + + + V+ V+ F+ +E+L+ G
Sbjct: 435 LIERIEKKCHIKMKIVGAPQPGDIVKASQTDIKKNLKTVNQEVVSMFQQVSEDLIQEFG- 493
Query: 529 SAAELLAKALAKAVVSAFLFSSSSNSLSLTSGTMCFF 565
E L++AL A +S ++ SL C +
Sbjct: 494 -PQEALSRAL--AYISGYIEGVKQRSLLCCLEGYCTY 527
>gi|348672301|gb|EGZ12121.1| hypothetical protein PHYSODRAFT_547952 [Phytophthora sojae]
Length = 654
Score = 334 bits (857), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 178/427 (41%), Positives = 268/427 (62%), Gaps = 18/427 (4%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
+ F +S + L G+ LFP+Q +FD+++ G+D++GR++TG GKTLAF LPI+E+
Sbjct: 57 IEDFALSQETQRNLLRAGVTHLFPVQTQSFDVMMRGADIMGRSKTGSGKTLAFALPIVET 116
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ A++K R P LVLLPTRELA+QVH++ V A L + + GG Y Q
Sbjct: 117 IL-----ANRKNT--RNPQALVLLPTRELAQQVHDE--VQRVAPQLRTVNVVGGVSYTVQ 167
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
E L++G D+++GTPGRI D +++G++ L + VLDEAD ML+ GF E VE ILG V
Sbjct: 168 ENHLRRGADILVGTPGRIMDLVDKGSLSLDDVDVAVLDEADMMLKFGFQEAVETILGWVP 227
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
+ QT+++SAT P WV ++ KFLK + +IDLVG+E + V H + R
Sbjct: 228 EGG--QTVMWSATFPKWVSSMAKKFLK-EPVSIDLVGDEDNQVPATVAHKAINAPVRDRI 284
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG--ARALHGDIQQSQREVTLAGFRSG 408
QV+ +++R ++ G+T++FTETK+ A ++A+ LPG ARALHGD+ Q R T++GFR+G
Sbjct: 285 QVLENVLRLHAHDGQTLVFTETKQEADEIANSLPGQDARALHGDLSQGMRTSTMSGFRNG 344
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS 468
TLV T++AARGLDI +V+L++Q P D E+++HR+GRTGRAG +G ++ +D R +
Sbjct: 345 HVKTLVCTDIAARGLDIANVELVVQYRLPSDKESFVHRAGRTGRAGRSGTNIVFFDGRDA 404
Query: 469 S-VSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
S V ER KF H + P P + + A + + +T + + F AA+ ++ G
Sbjct: 405 SDVLDFERRYKFKFAHAAPPHPEQMIEGALEDVNKQLTSLPKANAQLFDEAAQAMIEQQG 464
Query: 528 ---LSAA 531
LSAA
Sbjct: 465 PGVLSAA 471
>gi|302817066|ref|XP_002990210.1| hypothetical protein SELMODRAFT_30996 [Selaginella moellendorffii]
gi|300142065|gb|EFJ08770.1| hypothetical protein SELMODRAFT_30996 [Selaginella moellendorffii]
Length = 640
Score = 334 bits (856), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 185/422 (43%), Positives = 266/422 (63%), Gaps = 11/422 (2%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A++ +S + L +GI LFPIQ F + G DL+ RA+TG GKTLAF +PI++
Sbjct: 4 AIAGLGVSQEIVGHLADRGITHLFPIQRAVFQPAMKGVDLIARAKTGTGKTLAFGIPIMD 63
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
+ +K+ +++ G P+ LVL PTRELAKQV +F G L + C+YGG +
Sbjct: 64 RIYRSRSKSQRRSFRG--PAALVLAPTRELAKQVETEFMESGKE--LATVCVYGGVSIMS 119
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q+ L +G+DV +GTPGRI D +E+G +DLS ++ VLDEAD+ML +GF EDVE I+ ++
Sbjct: 120 QKRLLSRGVDVAVGTPGRIIDLLEQGCLDLSQVECMVLDEADQMLAVGFEEDVEKIMEQL 179
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
+ K Q +LFSAT+P WV+ +S KFL + TIDLVG K + ++ + S +A+
Sbjct: 180 PE--KRQNMLFSATMPGWVQKLSRKFL-NKPLTIDLVGESDEKLAEGIKLYAVQTSQAAK 236
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFR 406
+++ D+I Y GG+TI+FT+TK A +++ + G ALHGDI Q QRE TLA FR
Sbjct: 237 RKILSDVITVYGKGGKTIVFTQTKRDAEEVSMAMNRTLGCEALHGDIAQFQREKTLAAFR 296
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
G+F+ LVAT+VAARGLDI DV LII + PRD E ++HRSGRTGRAG G A++ + P+
Sbjct: 297 EGRFLILVATDVAARGLDITDVDLIIHYDLPRDSETFVHRSGRTGRAGKDGSALVFFSPQ 356
Query: 467 KSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNN 525
+ + K ER+ G F+ S P ++ A+ +A E I V + F + AE+LL+
Sbjct: 357 ERRILKHFERQVGCSFQFKSMPHFDEVLAASSSQAVELIKGVHPDLKQVFMATAEKLLDE 416
Query: 526 SG 527
G
Sbjct: 417 HG 418
>gi|444725163|gb|ELW65741.1| Nucleolar RNA helicase 2 [Tupaia chinensis]
Length = 1339
Score = 334 bits (856), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 186/437 (42%), Positives = 252/437 (57%), Gaps = 54/437 (12%)
Query: 99 EQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQG 158
EQE + A S F IS + LK +G+ LFPIQA TF V G DL+ +ARTG G
Sbjct: 811 EQEISVEQKEGAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTG 870
Query: 159 KTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLT 217
KT +F +P++E L G + K+ GR+P VLVL PTRELA QV DF D+ L+
Sbjct: 871 KTFSFAIPLIEKL-QGEMQDKKR---GRSPQVLVLTPTRELASQVSRDFSDI---TKKLS 923
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
C YGG PY Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MG
Sbjct: 924 VACFYGGTPYGGQIERMRNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMG 983
Query: 278 FVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAS 334
F + VE IL K + + QTLLFSAT P WV +++ K++K + +DL+G + K +
Sbjct: 984 FADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKPSYEQVDLIGKKTQKTA 1043
Query: 335 TNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD---LLPGARALH 390
V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+ + A++LH
Sbjct: 1044 ITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNTSIKQDAQSLH 1103
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
GDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++QC PP+
Sbjct: 1104 GDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQCSPPK------------ 1151
Query: 451 GRAGNTGVAVMLYDPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDS 510
G+KF+ I P +I KA+ +A + V +
Sbjct: 1152 ---------------------------GIKFKRIGVPSATEIIKASSKDAIRLLDSVPPT 1184
Query: 511 VIPAFKSAAEELLNNSG 527
I FK +AE+L+ G
Sbjct: 1185 AISHFKQSAEKLIEEKG 1201
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 121/301 (40%), Positives = 173/301 (57%), Gaps = 46/301 (15%)
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG---KVE 290
++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E VE I+ K +
Sbjct: 156 IRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTD 215
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
+ QTLLFSAT P WV ++ K++KS + +DLVG KA+T V H+ + C S R
Sbjct: 216 SEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRP 275
Query: 351 QVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVTLAGFR 406
VI D+++ YS S GR IIF ETK++ +++A + A+ LHGDI QSQRE+TL GFR
Sbjct: 276 AVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFR 335
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
G F LVATNVAARGLDI +V L+IQ PP+
Sbjct: 336 EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQ---------------------------- 367
Query: 467 KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNS 526
G+ F+ + P D+ K+ ++A ++ VS + + F+ +A+ L+
Sbjct: 368 -----------GITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEK 416
Query: 527 G 527
G
Sbjct: 417 G 417
>gi|145474053|ref|XP_001423049.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124390109|emb|CAK55651.1| unnamed protein product [Paramecium tetraurelia]
Length = 651
Score = 334 bits (856), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 187/424 (44%), Positives = 262/424 (61%), Gaps = 26/424 (6%)
Query: 121 REKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASK 180
R+ L+ +GI +LFPIQ F+ + +G D++G+ RTG GKTLA+ LPILE + K +K
Sbjct: 37 RKVLEGRGISNLFPIQQQCFETIYNGDDIIGQDRTGSGKTLAYCLPILERIRGLGLKQNK 96
Query: 181 KTGYGRAPSVLVLLPTRELAKQVHEDFD-VYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
P VLVLLPTRELA QV +F+ + +YGG Q ++++G +
Sbjct: 97 N------PYVLVLLPTRELAIQVTTEFNTILHKENEYRIYSIYGGTDLRNQIDQVRQGCE 150
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
+V+GTPGRI+D +ER + L ++ VLDEAD+ML GF E++E I+ + K+Q LL
Sbjct: 151 IVVGTPGRIQDLLERKVLKLDEIQVVVLDEADQMLNFGFQENIEKIMSYFNE-RKIQMLL 209
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSAT+P WVK +S K+++++ K I+L+ + + ST V+H L C+ + S I D++
Sbjct: 210 FSATIPDWVKELSHKYMEANTKHINLIKRHETQTSTTVKHYALQCARNQLSGAIGDVVSV 269
Query: 360 YSS-GGRTIIFTETKESASQ--LADLLPG-ARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
Y RTIIF ETK ++ L LP + LHGDI Q QR VT GF++GKF LVA
Sbjct: 270 YGGRHARTIIFCETKRECNEIILHSKLPAETQPLHGDIPQQQRTVTFEGFKNGKFKCLVA 329
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSKIER 475
TNVAARGLD V LIIQC PP+D+E+YIHRSGRTGRAG G + L + ++ER
Sbjct: 330 TNVAARGLDFPQVDLIIQCNPPKDIESYIHRSGRTGRAGKDGKDMGL-------IERVER 382
Query: 476 ESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLA 535
+ +KF ISAPQ DI KA+ + +TI ++ D F+ A+E++ S E LA
Sbjct: 383 VAKIKFIKISAPQHQDIIKASSRD-LQTIKRLVD----MFQPVAQEII--SRCDPVEALA 435
Query: 536 KALA 539
+ALA
Sbjct: 436 RALA 439
>gi|323450835|gb|EGB06714.1| hypothetical protein AURANDRAFT_28650, partial [Aureococcus
anophagefferens]
Length = 482
Score = 334 bits (856), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 178/386 (46%), Positives = 241/386 (62%), Gaps = 31/386 (8%)
Query: 123 KLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN----GPTKA 178
KL +GI+++ IQ +TFD G D++G++RTG GKTLAF LP++E L G
Sbjct: 101 KLAQRGIDTMTEIQHLTFDAAHAGRDVLGKSRTGTGKTLAFGLPLVERLAERAREGDYDP 160
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
K+ R P++LVL PTRELAKQV + + GL++ C +GG Y QE L++G+
Sbjct: 161 KKRA---RGPAILVLAPTRELAKQVEAELHLLAQTHGLSTTCFHGGVSYGPQENALRRGV 217
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE-------- 290
DV++ T GR+ DHI+RGN+DLS VLDEADEML MGF +DVE I +
Sbjct: 218 DVLVATVGRVIDHIDRGNLDLSDAYHVVLDEADEMLSMGFADDVERIFSDFDLDDLLGAA 277
Query: 291 --------DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRH--I 340
+ QTLLFSAT PSWVK +++K+L+ D + +D+VG+ + +A+T V H +
Sbjct: 278 PPPADAAAPLRRPQTLLFSATTPSWVKKLTSKYLE-DPELVDVVGDARQQAATTVTHKAV 336
Query: 341 VLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQS 396
++P AR+ ++ DII GGR I+FT TK+ +LA A+ LHGDI Q+
Sbjct: 337 LVPRGPDARASLLEDIIAAAQGGGRVIVFTSTKKECDELAGGPAFQRLAAQVLHGDIGQA 396
Query: 397 QREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNT 456
QRE TLA FR G F LVAT+VAARG+D+ V L++Q PRD E Y+HRSGRTGRAG
Sbjct: 397 QRETTLAQFRRGAFTVLVATDVAARGIDVKGVDLVVQYRTPRDAEGYVHRSGRTGRAGRD 456
Query: 457 GVAVMLYDPRKS-SVSKIERESGVKF 481
G AV+LYD R+ V +ER +GV F
Sbjct: 457 GTAVVLYDEREERDVRSLERLTGVTF 482
>gi|22331253|ref|NP_188872.2| DEAD-box ATP-dependent RNA helicase 53 [Arabidopsis thaliana]
gi|75335516|sp|Q9LUW5.1|RH53_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 53
gi|9293867|dbj|BAB01770.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|17064852|gb|AAL32580.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|20259816|gb|AAM13255.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|332643101|gb|AEE76622.1| DEAD-box ATP-dependent RNA helicase 53 [Arabidopsis thaliana]
Length = 616
Score = 334 bits (856), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 181/394 (45%), Positives = 258/394 (65%), Gaps = 17/394 (4%)
Query: 99 EQERGESEHPN----AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRAR 154
E+ G+SE A+S IS + + L SKGIE LFPIQ + ++G D++GRAR
Sbjct: 90 ERRVGDSESVGGDGLAISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRAR 149
Query: 155 TGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV 214
TG GKTLAF +PI++ + K + K G GR P LVL PTRELA+QV ++F A
Sbjct: 150 TGTGKTLAFGIPIIDKII----KYNAKHGRGRNPLCLVLAPTRELARQVEKEFRE--SAP 203
Query: 215 GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML 274
L + CLYGG P Q +L G+DV +GTPGR+ D ++RG ++LS ++F VLDEAD+ML
Sbjct: 204 SLDTICLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQML 263
Query: 275 RMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAS 334
++GF EDVE+IL K+ + K Q+++FSAT+PSW++ ++ K+L ++ T+DLVG+ K +
Sbjct: 264 QVGFAEDVEIILEKLPE--KRQSMMFSATMPSWIRSLTKKYL-NNPLTVDLVGDSDQKLA 320
Query: 335 TNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHG 391
+ + S R+ +I ++ ++ GG+ I+FT+TK A +L+ L + ALHG
Sbjct: 321 DGITTYSIIADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALARSFKCEALHG 380
Query: 392 DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451
DI QSQRE TLAGFR G F LVAT+VAARGLD+ +V LII E P + E ++HR+GRTG
Sbjct: 381 DISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTG 440
Query: 452 RAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHI 484
RAG G A+++Y +S +V IERE G +F +
Sbjct: 441 RAGKKGSAILIYSQDQSRAVKIIEREVGSRFTEL 474
>gi|302769696|ref|XP_002968267.1| hypothetical protein SELMODRAFT_10677 [Selaginella moellendorffii]
gi|300163911|gb|EFJ30521.1| hypothetical protein SELMODRAFT_10677 [Selaginella moellendorffii]
Length = 614
Score = 334 bits (856), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 180/434 (41%), Positives = 272/434 (62%), Gaps = 14/434 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A++ I + + L +GI +LFPIQ F + G DL+ RA+TG GKTLAF +PIL+
Sbjct: 5 AIASLGIDSRIVDALAKRGIVNLFPIQRAVFQPAMQGLDLIARAKTGTGKTLAFGIPILD 64
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
+++ K+S + P ++L PTRELAKQV + + A L+ C+YGG
Sbjct: 65 NISR--EKSSMQFRPAGTPRAIILAPTRELAKQVENELVL--AAPHLSVVCIYGGVSIEG 120
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q +L ++VV+GTPGR+ D +ERG++ L+ +KF +LDEAD+ML +GF E+VE I+ K+
Sbjct: 121 QRRQLASSVEVVVGTPGRVIDMLERGDLRLNEVKFAILDEADQMLAVGFAEEVERIMQKL 180
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
+ T+LFSAT+PSW++++++K+LK + IDLVG + K + ++ + + A+
Sbjct: 181 P--LQRHTMLFSATMPSWIRNLTSKYLK-NPTMIDLVGENEDKVAEGIKLYAVSTNDLAK 237
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFR 406
++++ D++ Y+ GG+ I+FT+TK +A ++ G ALHGDI Q QRE TL+GFR
Sbjct: 238 NKLLADLLTVYAKGGKAIVFTKTKRDTDDVAAVMSRSIGCEALHGDISQYQREKTLSGFR 297
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
G+F LVAT+VAARGLDI +V LI+ E P D E ++HRSGRTGRAG G +++Y
Sbjct: 298 DGRFNVLVATDVAARGLDIPNVDLIVHYEVPGDSETFVHRSGRTGRAGKKGTCILMYTLN 357
Query: 467 KSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNN 525
+ V + IE E G KFE I P D+ ++ A+E+I V + F AA++LL
Sbjct: 358 QKRVLRTIESEVGCKFEAIGPPAAEDVLASSSDHASESIKSVHPDLAKLFLPAAQKLLEE 417
Query: 526 SGLSAAELLAKALA 539
G++A LA A+A
Sbjct: 418 QGVTA---LAAAMA 428
>gi|168042093|ref|XP_001773524.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675226|gb|EDQ61724.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 619
Score = 334 bits (856), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 189/463 (40%), Positives = 274/463 (59%), Gaps = 16/463 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A++ +S + E L +GI LFPIQ + + G DL+ RA+TG GKTLAF +PI+
Sbjct: 5 AINSLGVSEDIVEALAKRGITHLFPIQRAVLEPAMKGQDLIARAKTGTGKTLAFGIPIIR 64
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
+ +G A GR+P LVL PTRELAKQV +F A L++ C+YGG P
Sbjct: 65 HIVDG--NAENAPRQGRSPRALVLAPTRELAKQVEREF--MESAPMLSTVCVYGGVPISM 120
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q+ +L++G+D+ +GTPGRI D I+RG++ L + F VLDEAD+ML +GF EDVE IL ++
Sbjct: 121 QQRQLERGVDIAVGTPGRIIDLIDRGSLKLKDVHFLVLDEADQMLAVGFEEDVERILQQL 180
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
+ Q++LFSAT+P WVK +S K+L TIDLVG+ K + ++++ + +SA+
Sbjct: 181 --PKQRQSMLFSATMPKWVKELSRKYLNK-PLTIDLVGDSDEKLADGIKNLAIQLPASAK 237
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVTLAGFR 406
++ D+I + GG+TI+FT+TK A +A L ALHGDI Q QRE TL+ FR
Sbjct: 238 RSILSDLITVHGKGGKTIVFTQTKRDADDVAMAMGNLVSCGALHGDISQVQREKTLSAFR 297
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
GK LVAT+VAARGLD+ +V L+I E P D E ++HR+GRTGRAG +G ++++ +
Sbjct: 298 DGKIAVLVATDVAARGLDVPNVDLVIHYEIPNDSETFVHRTGRTGRAGRSGTNILMFTSQ 357
Query: 467 K-SSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNN 525
+ ++ IE KF+ + P D+ +A+ + + V S+ F+ AE LL
Sbjct: 358 QVRTMRTIENNVKCKFQIVGLPHVRDVMRASFEQVKGALENVDASLAAEFRPTAESLLEE 417
Query: 526 SGLSAAELLAKALAKAVVSAFLFSSSSNSLSLTSGTMCFFRLT 568
G ++ A ALA +S F S SL M RL
Sbjct: 418 KG---PDVFAAALAH--LSGFSQLPPSRSLLTYEPGMTTVRLV 455
>gi|325283382|ref|YP_004255923.1| DEAD/DEAH box helicase domain protein [Deinococcus proteolyticus
MRP]
gi|324315191|gb|ADY26306.1| DEAD/DEAH box helicase domain protein [Deinococcus proteolyticus
MRP]
Length = 612
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 190/430 (44%), Positives = 266/430 (61%), Gaps = 22/430 (5%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
I+ L +L +GI PIQA + L G DL+GRARTG GKTLAF LPI++ L P
Sbjct: 7 IAPALAARLAERGITEASPIQAESLPHTLQGRDLIGRARTGTGKTLAFALPIIQGLE--P 64
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
++ R P +V+ PTRELA+QV +F+ G LT +YGGA Y QE L+
Sbjct: 65 SRERS-----RLPRAIVVAPTRELARQVAAEFEQTGRE--LTVLTVYGGAAYGPQETALR 117
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
+G+DVV+GTPGR+ DH+ERGN+DL +K+ VLDEADEML +GF + +E IL +
Sbjct: 118 RGVDVVVGTPGRLIDHLERGNLDLQEVKYAVLDEADEMLSVGFADAIETILKTTPEGR-- 175
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QTLLFSATL ++ +S K+L +D +D+VG K +A+ V H+ + S R++V+ D
Sbjct: 176 QTLLFSATLTPEIRRLSNKYL-NDPLVVDMVGEGKSQAAQTVEHLKVRVGRS-RTRVLAD 233
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFM 411
++ Y+ + I+FT TK +LA L A ALHGD+ Q+QRE L FRSG+
Sbjct: 234 LLTVYNPE-KAIVFTRTKRETDELALELIHRGFEAEALHGDLAQNQRERALGSFRSGRTS 292
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DPRKSSV 470
LVAT+VAARGLDI +V L++Q P+D E+Y+HRSGRTGRAG G A+++Y D + +
Sbjct: 293 ILVATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRAGTAIIMYGDREQRDI 352
Query: 471 SKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSA 530
+ +ER +GV+F P P ++ +A+ ++E + +V F AE LL G
Sbjct: 353 NGLERVTGVRFTERPLPTPREVQEASAHASSEMLRRVDAEAAAGFMEQAEALLEEMG--- 409
Query: 531 AELLAKALAK 540
AE LA+ALAK
Sbjct: 410 AEALARALAK 419
>gi|302788684|ref|XP_002976111.1| hypothetical protein SELMODRAFT_10661 [Selaginella moellendorffii]
gi|300156387|gb|EFJ23016.1| hypothetical protein SELMODRAFT_10661 [Selaginella moellendorffii]
Length = 597
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 180/434 (41%), Positives = 272/434 (62%), Gaps = 14/434 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A++ I + + L +GI +LFPIQ F + G DL+ RA+TG GKTLAF +PIL+
Sbjct: 5 AIASLGIDSRIVDALAKRGIVNLFPIQRAVFQPAMQGLDLIARAKTGTGKTLAFGIPILD 64
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
+++ K+S + P ++L PTRELAKQV + + A L+ C+YGG
Sbjct: 65 NISR--EKSSMQFRPAGTPRAIILAPTRELAKQVENELVL--AAPHLSVVCIYGGVSIEG 120
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q +L ++VV+GTPGR+ D +ERG++ L+ +KF +LDEAD+ML +GF E+VE I+ K+
Sbjct: 121 QRRQLASSVEVVVGTPGRVIDMLERGDLRLNEVKFAILDEADQMLAVGFAEEVERIMQKL 180
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
+ T+LFSAT+PSW++++++K+LK + IDLVG + K + ++ + + A+
Sbjct: 181 P--LQRHTMLFSATMPSWIRNLTSKYLK-NPTMIDLVGENEDKVAEGIKLYAVSTNDLAK 237
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFR 406
++++ D++ Y+ GG+ I+FT+TK +A ++ G ALHGDI Q QRE TL+GFR
Sbjct: 238 NKLLADLLTVYAKGGKAIVFTKTKRDTDDVAAVMSRSIGCEALHGDISQYQREKTLSGFR 297
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
G+F LVAT+VAARGLDI +V LI+ E P D E ++HRSGRTGRAG G +++Y
Sbjct: 298 DGRFNVLVATDVAARGLDIPNVDLIVHYEVPGDSETFVHRSGRTGRAGKKGTCILMYTLN 357
Query: 467 KSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNN 525
+ V + IE E G KFE I P D+ ++ A+E+I V + F AA++LL
Sbjct: 358 QKRVLRTIESEVGCKFEAIGPPAAEDVLASSSDHASESIKSVHPDLAKLFLPAAQKLLEE 417
Query: 526 SGLSAAELLAKALA 539
G++A LA A+A
Sbjct: 418 QGVNA---LAAAMA 428
>gi|429220700|ref|YP_007182344.1| DNA/RNA helicase [Deinococcus peraridilitoris DSM 19664]
gi|429131563|gb|AFZ68578.1| DNA/RNA helicase, superfamily II [Deinococcus peraridilitoris DSM
19664]
Length = 570
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 196/450 (43%), Positives = 277/450 (61%), Gaps = 26/450 (5%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
I+ L E L ++GI + PIQ + L G DL+GRARTG GKTLAFVLPI L
Sbjct: 7 IAPHLAEALAARGISAPSPIQIESLPHTLAGRDLIGRARTGTGKTLAFVLPITTRL---- 62
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
+AS+++G R P ++L PTRELAKQV + + A LT+ +YGGA Y QE L
Sbjct: 63 -EASRQSG--RGPRAIILAPTRELAKQVAAEAEQ--SARHLTTVTVYGGAAYGPQEKALM 117
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
+G+D+V+GTPGRI DH+ERGN+ L ++ VLDEADEML +GF + +E IL
Sbjct: 118 RGVDIVVGTPGRIIDHLERGNLRLDDVQIAVLDEADEMLSVGFADAIEQILRSAP--KDR 175
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QT+LFSATLPS V+ ++ ++ + D +DLVG +AS V H+ + R++V+ D
Sbjct: 176 QTMLFSATLPSGVERLARQY-QRDPVLVDLVGERASQASQTVTHLAIKVGR-VRTRVLAD 233
Query: 356 IIRCYSSGGRTIIFTETKESASQLA-DLLPG---ARALHGDIQQSQREVTLAGFRSGKFM 411
++ Y+ R I+FT TK A +L+ +L+ A ALHGD+ QSQRE L FR+G+
Sbjct: 234 LLTVYNPE-RAIVFTRTKREADELSLELIHRGIEAEALHGDLAQSQRERALGAFRAGRVR 292
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SV 470
LVAT+VAARGLDI +V L++Q P D EAY+HRSGRTGRAG G A++LY R+ +
Sbjct: 293 VLVATDVAARGLDIPEVDLVVQYHMPNDTEAYVHRSGRTGRAGREGTAIVLYGDREGREL 352
Query: 471 SKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSA 530
S +ER +GV+F + P ++ +A+ AA+ + + + + +FK AE+L
Sbjct: 353 SNLERATGVRFTPRAVPTAKEVREASARTAADAVRHIENDLGASFKEEAEKLF------- 405
Query: 531 AELLAKALAKAVVSAFLFSSSSNSLSLTSG 560
AEL ALA+A+ ++ + S SL SG
Sbjct: 406 AELGVDALARALAKIAGVTAPATSASLLSG 435
>gi|297812857|ref|XP_002874312.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
gi|297320149|gb|EFH50571.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
Length = 748
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 181/422 (42%), Positives = 262/422 (62%), Gaps = 9/422 (2%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A+S+ + L E L+ +GI LFPIQ L G D++ RA+TG GKTLAF +PI++
Sbjct: 103 AISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIK 162
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
LT S GR P LVL PTRELAKQV ++ + A L++ C+YGG Y
Sbjct: 163 RLTEEAGDYSAFRRSGRLPKFLVLAPTRELAKQVEKE--IKESAPYLSTVCVYGGVSYTI 220
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q+ L +G+DVV+GTPGRI D IE ++ L +++ VLDEAD+ML +GF E VE IL +
Sbjct: 221 QQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENL 280
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
K Q++LFSAT+P+WVK ++ K+L + IDLVG++ K + ++ + +S+++
Sbjct: 281 --PTKRQSMLFSATMPTWVKKLARKYL-DNPLNIDLVGDQDEKLAEGIKLYAIATTSTSK 337
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFR 406
++ D+I Y+ GG+TI+FT+TK A +++ L + ALHGDI Q QRE TL FR
Sbjct: 338 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFR 397
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DP 465
GKF LVAT+VA+RGLDI +V L+I E P D E ++HRSGRTGRAG G A++++
Sbjct: 398 QGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSS 457
Query: 466 RKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNN 525
+K +V +ER+ G FE IS P D+ +++ + T+ V I F + A++L
Sbjct: 458 QKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLNAVHPDSIKFFSATAQKLYEE 517
Query: 526 SG 527
G
Sbjct: 518 KG 519
>gi|209882562|ref|XP_002142717.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
gi|209558323|gb|EEA08368.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
Length = 667
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 181/462 (39%), Positives = 278/462 (60%), Gaps = 39/462 (8%)
Query: 85 KKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVL 144
KK+K +V E+ VE + S E LK +GI LFPIQA +F+ +
Sbjct: 4 KKRKVEVNEESSVE--------------LYPFSTETMEILKKRGINRLFPIQAKSFNYIF 49
Query: 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204
+ +D++G+A+TG GKTLAFVLP++E L + + G R P VLVLLPTRELA+QV
Sbjct: 50 NKNDVLGKAKTGTGKTLAFVLPVIERLIKKGKFHTNEIG--RKPLVLVLLPTRELAQQVS 107
Query: 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264
+F++ G +YGG+P + Q ++KKG+D+++G PGR+ D IER +++S +
Sbjct: 108 NEFELMKGNNRYKVVSIYGGSPEYPQIQEVKKGVDIIVGCPGRVLDFIERNILNVSKINV 167
Query: 265 RVLDEADEMLRMGFVEDVELILGKVE--------DANK-VQTLLFSATLPSWVKHISTKF 315
+LDEAD+ML MGF E V+ ++ V+ D N+ Q LLFSAT+PSW+K I +
Sbjct: 168 LILDEADKMLEMGFKEYVDKVIDFVKKQTSEENTDKNRRFQILLFSATVPSWIKKIVNEI 227
Query: 316 LKSDKKTIDLV-----GNEKMKASTN--VRHIVLPCSSSARSQVIPDIIRCYSS-GGRTI 367
+ +D T+D+ GNE S N +RH+ + C+ R+ ++ DII Y+ G+ I
Sbjct: 228 MSNDTVTVDVTNISVDGNEDSSDSGNTRIRHLAIQCAYPQRTALLKDIITMYAGIHGKCI 287
Query: 368 IFTETKESASQLA---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLD 424
IFTETK++A++++ + + LHGDIQQSQRE+ L F+ G++ LVAT+VAARGL
Sbjct: 288 IFTETKQTANEISMRSTISDMCQVLHGDIQQSQREIALQAFKEGRYRCLVATDVAARGLH 347
Query: 425 INDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS-VSKIERESGVKFEH 483
I+DV ++IQ PPRD++ YIHR+GRTGRAG G A++ + + IE+ + F+
Sbjct: 348 IDDVAVVIQLAPPRDIDTYIHRAGRTGRAGKFGTAILFCNMNDYPFLLNIEKIGNINFQR 407
Query: 484 ISAPQPADIAKAAGVEAAETIT--QVSDSVIPAFKSAAEELL 523
I APQ +I + E + +S +++ + A++++
Sbjct: 408 IGAPQFEEILQKTADSVGEYLVGKNISSTILNSLTKPAKDII 449
>gi|79328737|ref|NP_001031943.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
gi|108861893|sp|Q8L7S8.2|RH3_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 3, chloroplastic;
AltName: Full=Protein EMBRYO DEFECTIVE 1138; Flags:
Precursor
gi|19347898|gb|AAL85971.1| unknown protein [Arabidopsis thaliana]
gi|20259537|gb|AAM13888.1| unknown protein [Arabidopsis thaliana]
gi|20453225|gb|AAM19851.1| At5g26752 [Arabidopsis thaliana]
gi|21689779|gb|AAM67533.1| unknown protein [Arabidopsis thaliana]
gi|23397145|gb|AAN31856.1| unknown protein [Arabidopsis thaliana]
gi|25090432|gb|AAN72300.1| At5g26752/At5g26752 [Arabidopsis thaliana]
gi|27311701|gb|AAO00816.1| Unknown protein [Arabidopsis thaliana]
gi|110739485|dbj|BAF01652.1| hypothetical protein [Arabidopsis thaliana]
gi|332006182|gb|AED93565.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
Length = 748
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 182/424 (42%), Positives = 266/424 (62%), Gaps = 13/424 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A+S+ + L E L+ +GI LFPIQ L G D++ RA+TG GKTLAF +PI++
Sbjct: 103 AISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIK 162
Query: 170 SLTN--GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LT G A +++G R P LVL PTRELAKQV ++ + A L++ C+YGG Y
Sbjct: 163 RLTEEAGDYTAFRRSG--RLPKFLVLAPTRELAKQVEKE--IKESAPYLSTVCVYGGVSY 218
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q+ L +G+DVV+GTPGRI D IE ++ L +++ VLDEAD+ML +GF E VE IL
Sbjct: 219 TIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILE 278
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
+ K Q++LFSAT+P+WVK ++ K+L + IDLVG++ K + ++ + +S+
Sbjct: 279 NL--PTKRQSMLFSATMPTWVKKLARKYL-DNPLNIDLVGDQDEKLAEGIKLYAIATTST 335
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAG 404
++ ++ D+I Y+ GG+TI+FT+TK A +++ L + ALHGDI Q QRE TL
Sbjct: 336 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNA 395
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY- 463
FR GKF LVAT+VA+RGLDI +V L+I E P D E ++HRSGRTGRAG G A++++
Sbjct: 396 FRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHT 455
Query: 464 DPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELL 523
+K +V +ER+ G FE IS P D+ +++ + T+ V I F + A++L
Sbjct: 456 SSQKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDSIKFFSATAQKLY 515
Query: 524 NNSG 527
G
Sbjct: 516 EEKG 519
>gi|30690260|ref|NP_680225.2| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
gi|20856975|gb|AAM26693.1| At5g26743 [Arabidopsis thaliana]
gi|28416497|gb|AAO42779.1| At5g26743 [Arabidopsis thaliana]
gi|332006181|gb|AED93564.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
Length = 747
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 182/424 (42%), Positives = 266/424 (62%), Gaps = 13/424 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A+S+ + L E L+ +GI LFPIQ L G D++ RA+TG GKTLAF +PI++
Sbjct: 103 AISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIK 162
Query: 170 SLTN--GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LT G A +++G R P LVL PTRELAKQV ++ + A L++ C+YGG Y
Sbjct: 163 RLTEEAGDYTAFRRSG--RLPKFLVLAPTRELAKQVEKE--IKESAPYLSTVCVYGGVSY 218
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q+ L +G+DVV+GTPGRI D IE ++ L +++ VLDEAD+ML +GF E VE IL
Sbjct: 219 TIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILE 278
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
+ K Q++LFSAT+P+WVK ++ K+L + IDLVG++ K + ++ + +S+
Sbjct: 279 NL--PTKRQSMLFSATMPTWVKKLARKYL-DNPLNIDLVGDQDEKLAEGIKLYAIATTST 335
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAG 404
++ ++ D+I Y+ GG+TI+FT+TK A +++ L + ALHGDI Q QRE TL
Sbjct: 336 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNA 395
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY- 463
FR GKF LVAT+VA+RGLDI +V L+I E P D E ++HRSGRTGRAG G A++++
Sbjct: 396 FRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHT 455
Query: 464 DPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELL 523
+K +V +ER+ G FE IS P D+ +++ + T+ V I F + A++L
Sbjct: 456 SSQKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDSIKFFSATAQKLY 515
Query: 524 NNSG 527
G
Sbjct: 516 EEKG 519
>gi|297830944|ref|XP_002883354.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp.
lyrata]
gi|297329194|gb|EFH59613.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp.
lyrata]
Length = 615
Score = 331 bits (849), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 174/379 (45%), Positives = 250/379 (65%), Gaps = 13/379 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A+S IS + + LK +GIE LFPIQ + + G D++GRARTG GKTLAF +P+++
Sbjct: 121 AISELGISPEIVKALKGRGIEKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPVID 180
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
+ K + K G G+ P LVL PTRELA+QV ++F A L + CLYGG P
Sbjct: 181 KII----KFNAKHGRGKNPQCLVLAPTRELARQVEKEFRE--SAPSLDTICLYGGTPIGQ 234
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q +L GIDV +GTPGRI D ++RG ++LS ++F VLDEAD+ML++GF EDVE+IL K+
Sbjct: 235 QMRELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKL 294
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
+ K Q+++FSAT+PSW++ ++ K+L ++ TIDLVG+ K + + + S R
Sbjct: 295 PE--KRQSMMFSATMPSWIRSLTKKYL-NNPLTIDLVGDSDQKLADGITMYSIAADSYGR 351
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFR 406
+ +I ++ + GG+ I+FT+TK A +LA L + ALHGDI Q+QRE TLAGFR
Sbjct: 352 ASIIGPLVNEHGKGGKCIVFTQTKRDADRLAFGLAKSFKCEALHGDISQAQRERTLAGFR 411
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
G F LVAT+VAARGLD+ +V L+I E P + E ++HR+GRTGRAG G A++++
Sbjct: 412 DGNFNILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQE 471
Query: 467 KS-SVSKIERESGVKFEHI 484
+S +V IE+E G +F +
Sbjct: 472 QSRAVKMIEKEVGSRFNEL 490
>gi|402880683|ref|XP_003903927.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Papio anubis]
Length = 680
Score = 331 bits (849), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 208/541 (38%), Positives = 290/541 (53%), Gaps = 72/541 (13%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSET--SSELGEPV 75
M K+ D E EA L E S KK+ +K + K R + +E+ E E + +L P
Sbjct: 1 MPGKLLWGDIMELEAPLEESESQKKERQKSDRRKSRHHYDSDEKSETRENGVTDDLDAPK 60
Query: 76 -------------------NLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRI 116
L E K K + K P ++E E+
Sbjct: 61 AKKTKMKEKLNGDTEEGFNRLSDEFSKSHKSRRKDLPNGDIDEYEK-------------- 106
Query: 117 SVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV-LPILESLTNGP 175
KSK + SL + D L+ T + K AF PI E
Sbjct: 107 --------KSKRVSSLDSSTHKSSDNKLE------ETLTREQKEGAFSNFPISEETI--- 149
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKL 234
K GR VLVL PTRELA QV +DF D+ L+ C YGG Y +Q +
Sbjct: 150 -----KLLKGRG--VLVLAPTRELANQVAKDFKDI---TRKLSVACFYGGTSYQSQINHI 199
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG---KVED 291
+ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E VE I+ K +
Sbjct: 200 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 259
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
+ QTLLFSAT P WV ++ K++KS + +DLVG KA+T V H+ + C S R
Sbjct: 260 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 319
Query: 352 VIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVTLAGFRS 407
VI D+++ YS S GR IIF ETK++ +++A + A+ LHGDI QSQRE+TL GFR
Sbjct: 320 VIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFRE 379
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR- 466
G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG TG+ + Y PR
Sbjct: 380 GSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRE 439
Query: 467 KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNS 526
+ + +E+++G+ F+ + P D+ K+ ++A ++ VS + + F+ +A+ L+
Sbjct: 440 RGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEK 499
Query: 527 G 527
G
Sbjct: 500 G 500
>gi|3775987|emb|CAA09196.1| RNA helicase [Arabidopsis thaliana]
Length = 748
Score = 331 bits (849), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 182/424 (42%), Positives = 266/424 (62%), Gaps = 13/424 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A+S+ + L E L+ +GI LFPIQ L G D++ RA+TG GKTLAF +PI++
Sbjct: 103 AISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIK 162
Query: 170 SLTN--GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LT G A +++G R P LVL PTRELAKQV ++ + A L++ C+YGG Y
Sbjct: 163 RLTEEAGDYTAFRRSG--RLPKFLVLAPTRELAKQVEKE--IKESAPYLSTVCVYGGVSY 218
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q+ L +G+DVV+GTPGRI D IE ++ L +++ VLDEAD+ML +GF E VE IL
Sbjct: 219 TIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILE 278
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
+ K Q++LFSAT+P+WVK ++ K+L + IDLVG++ K + ++ + +S+
Sbjct: 279 NL--PTKRQSMLFSATMPTWVKKLARKYL-DNPLNIDLVGDQDEKLAEGIKLYAIATTST 335
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAG 404
++ ++ D+I Y+ GG+TI+FT+TK A +++ L + ALHGDI Q QRE TL
Sbjct: 336 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNA 395
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY- 463
FR GKF LVAT+VA+RGLDI +V L+I E P D E ++HRSGRTGRAG G A++++
Sbjct: 396 FRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHT 455
Query: 464 DPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELL 523
+K +V +ER+ G FE IS P D+ +++ + T+ V I F + A++L
Sbjct: 456 SSQKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDSIKFFSATAQKLY 515
Query: 524 NNSG 527
G
Sbjct: 516 EEKG 519
>gi|384244948|gb|EIE18444.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 674
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 184/406 (45%), Positives = 258/406 (63%), Gaps = 13/406 (3%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L + I++LFPIQ F G DL+GRARTG GKTLAF LP+LE+L +++ +
Sbjct: 64 LGKRNIKALFPIQKHVFGPARAGRDLIGRARTGSGKTLAFALPVLENLLKENSQSPPQ-- 121
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
GR+P ++L PTRELAKQV ++F A GL C YGG Q +L+ G+DV +G
Sbjct: 122 RGRSPRCIILAPTRELAKQVEKEFQ--ESAPGLNVGCFYGGVDIGGQIRQLRSGVDVAVG 179
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D I R +DLS +F +LDEAD ML MGF EDVE+IL V + QT+LFSAT
Sbjct: 180 TPGRVIDLINRNCLDLSLTRFVILDEADMMLSMGFSEDVEIILDSV--PAERQTMLFSAT 237
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGN-EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
+PSWVK+I+ K LK + +DLVG+ + K ++ + + + AR ++ D+I ++
Sbjct: 238 MPSWVKNITRKHLK-NPALVDLVGDAQSGKMPDAIKTMAVHVTQEARRSILVDLITVHAL 296
Query: 363 GGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
GG+ I+FT+TK A ++A L+ ALHGDI Q+QRE L FR+GKF LVAT+VA
Sbjct: 297 GGKCIVFTQTKREADEVAASLSLVHPCEALHGDISQAQREQVLKNFRNGKFTALVATDVA 356
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESG 478
ARGLDI DV L++ + PRD EA++HRSGRTGRAG TG + + PR +S ++ E
Sbjct: 357 ARGLDIPDVDLVVHYDLPRDTEAFLHRSGRTGRAGKTGSTIAVVLPRDRSYFRRMCAEIK 416
Query: 479 VK-FEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELL 523
+K E+IS+P P+ + +A+ + + V + VI F AA+ +L
Sbjct: 417 LKDVEYISSPSPSAVMEASAKQVLRRLDNVDEKVIEFFAPAAKLVL 462
>gi|22135801|gb|AAM91087.1| At5g26740 [Arabidopsis thaliana]
Length = 748
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 181/424 (42%), Positives = 265/424 (62%), Gaps = 13/424 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A+S+ + L E L+ +GI LFPIQ L G D++ RA+TG GKTLAF +PI++
Sbjct: 103 AISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIK 162
Query: 170 SLTN--GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LT G A +++G R P LVL PTRELAKQV ++ + A L++ C+YGG Y
Sbjct: 163 RLTEEAGDYTAFRRSG--RLPKFLVLAPTRELAKQVEKE--IKESAPYLSTVCVYGGVSY 218
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q+ L +G+DVV+GTPGRI D IE ++ L +++ VLDEAD+ML +GF E VE IL
Sbjct: 219 TIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILE 278
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
+ K Q++LFSAT+P+WVK ++ K+L + IDLVG++ K + ++ + +S+
Sbjct: 279 NL--PTKRQSMLFSATMPTWVKKLARKYL-DNPLNIDLVGDQDEKLAEGIKLYAIATTST 335
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAG 404
++ ++ D+I Y+ GG+ I+FT+TK A +++ L + ALHGDI Q QRE TL
Sbjct: 336 SKRTILSDLITVYAKGGKNIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNA 395
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY- 463
FR GKF LVAT+VA+RGLDI +V L+I E P D E ++HRSGRTGRAG G A++++
Sbjct: 396 FRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHT 455
Query: 464 DPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELL 523
+K +V +ER+ G FE IS P D+ +++ + T+ V I F + A++L
Sbjct: 456 SSQKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDSIKFFSATAQKLY 515
Query: 524 NNSG 527
G
Sbjct: 516 EEKG 519
>gi|15228722|ref|NP_188870.1| DEAD-box ATP-dependent RNA helicase 9 [Arabidopsis thaliana]
gi|75335517|sp|Q9LUW6.1|RH9_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 9
gi|9293865|dbj|BAB01768.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|20268676|gb|AAM14042.1| putative RNA helicase [Arabidopsis thaliana]
gi|332643099|gb|AEE76620.1| DEAD-box ATP-dependent RNA helicase 9 [Arabidopsis thaliana]
Length = 610
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 173/379 (45%), Positives = 251/379 (66%), Gaps = 13/379 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A++ IS + + LK +GIE LFPIQ + ++G D++GRARTG GKTLAF +PI++
Sbjct: 117 AIADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIID 176
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
+ K + K G G+ P LVL PTRELA+QV ++F A L + CLYGG P
Sbjct: 177 KII----KFNAKHGRGKNPQCLVLAPTRELARQVEKEF--RESAPSLDTICLYGGTPIGQ 230
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q +L GIDV +GTPGRI D ++RG ++LS ++F VLDEAD+ML++GF EDVE+IL K+
Sbjct: 231 QMRELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKL 290
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
K Q+++FSAT+PSW++ ++ K+L ++ TIDLVG+ K + + + S R
Sbjct: 291 P--AKRQSMMFSATMPSWIRSLTKKYL-NNPLTIDLVGDSDQKLADGITMYSIAADSYGR 347
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFR 406
+ +I +++ + GG+ I+FT+TK A +LA L + ALHGDI Q+QRE TLAGFR
Sbjct: 348 ASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGLAKSYKCEALHGDISQAQRERTLAGFR 407
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
G F LVAT+VAARGLD+ +V L+I E P + E ++HR+GRTGRAG G A++++
Sbjct: 408 DGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQD 467
Query: 467 KS-SVSKIERESGVKFEHI 484
++ +V IE+E G +F +
Sbjct: 468 QTRAVKMIEKEVGSRFNEL 486
>gi|403331283|gb|EJY64580.1| DEAD/DEAH box helicase family protein [Oxytricha trifallax]
Length = 1264
Score = 328 bits (841), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 194/478 (40%), Positives = 278/478 (58%), Gaps = 28/478 (5%)
Query: 33 ALTEKS-SDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKKKKKAKV 91
++ +KS S K S+ S K R+ +EER ++ ++ N +S K K +
Sbjct: 354 SMKDKSRSQSKDSRNHHSQKDRRIQSSFHQEERDDSEKDMRRMDNNRS-KSKYPSEVVSN 412
Query: 92 EPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVG 151
+ + + G+S+ V+ IS LK +GI+ LFPIQ F + +G DL+G
Sbjct: 413 KKDMSSGNEVYGDSQEGQFVNYPEISQKSVAILKERGIKYLFPIQQECFYPIYEGKDLIG 472
Query: 152 RARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF---- 207
R TG GKTLAFVLP+LE L + +KK G R +VL PTRELA QV F
Sbjct: 473 RDLTGSGKTLAFVLPLLERL-----RKTKKLG-TRKIQAIVLAPTRELAVQVQNVFAQMK 526
Query: 208 ---DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264
D Y + +YGG P Q L +G+D+ +GT GR+ DHIERGNID S +K
Sbjct: 527 HFDDEY------RTLTVYGGVPIDPQTSALTRGVDIFVGTTGRVLDHIERGNIDFSGIKS 580
Query: 265 RVLDEADEMLRMGFVEDVELILGKVEDANK--VQTLLFSATLPSWVKHISTKFLKSDKKT 322
LDEAD ML++GF EDV+ IL + D + +Q LFSAT+P WV+ I+ + L+
Sbjct: 581 VFLDEADVMLKLGFKEDVDKILSIIRDQCREDIQICLFSATIPPWVRDIAQEHLRQGYTM 640
Query: 323 IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQL--A 380
+DL + K K + VRHI + C QVI D++ Y +GGR+I+FT+TK A+ L +
Sbjct: 641 VDLAKDLKNKTAKRVRHIAINCPFYKTEQVILDLLMMYGTGGRSIVFTKTKSDANSLISS 700
Query: 381 DLLP--GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR 438
D + +HGDI Q RE+TL F+ G+ LVAT+VA+RGLDI +V+LI+Q EPP+
Sbjct: 701 DRFSKNDIQVMHGDIPQHSREMTLRAFKEGRLKVLVATDVASRGLDIPNVELIVQTEPPQ 760
Query: 439 DVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKA 495
D E YIHR+GRT RAG G ++LY + + + +IE+ +G++FE +SAP P+++ A
Sbjct: 761 DPETYIHRAGRTARAGKEGTCIVLYQNKTQYMMEQIEQRAGIQFEQMSAPSPSEVMNA 818
>gi|124506009|ref|XP_001351602.1| ATP-dependent helicase, putative [Plasmodium falciparum 3D7]
gi|23504529|emb|CAD51409.1| ATP-dependent helicase, putative [Plasmodium falciparum 3D7]
gi|156072126|gb|ABU45414.1| DEAD-box helicase 5 [Plasmodium falciparum]
Length = 755
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 184/460 (40%), Positives = 262/460 (56%), Gaps = 51/460 (11%)
Query: 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT------------NG 174
KGI+ + IQ+ +F + +G D++GR+ TG GKTLAF LP++E L NG
Sbjct: 161 KGIKYMTKIQSQSFKPIYEGKDIIGRSETGSGKTLAFALPLVEKLYKMKTSNEKFEEENG 220
Query: 175 PTKASKKT---------------GYGRA---------PSVLVLLPTRELAKQVHEDFDVY 210
+ +K YG+ PS+LVL PTREL+KQV F
Sbjct: 221 SHEEDQKKNIYDDVDNDNNYDNFSYGKKYQNREHNKDPSILVLEPTRELSKQVENTFKEI 280
Query: 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270
+YGG Y QE KL+KGID++ GTPGRI DHIE+ N+ L ++K+ VLDEA
Sbjct: 281 SQFYNFNIMSIYGGESYTYQENKLRKGIDILTGTPGRIIDHIEKKNLSLQNIKYVVLDEA 340
Query: 271 DEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK 330
DEML +GF D+E IL + + + Q LL+SAT PSW+K IS+K+LK + ID+V +
Sbjct: 341 DEMLNLGFTHDIERILSNI-NLKEAQVLLYSATTPSWIKDISSKYLK-NPFCIDVVDSSN 398
Query: 331 MKASTNVRHIVL--PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLAD-----LL 383
K + N++HI + P ++ ++ DII S+GG+ IIFT TK A L L
Sbjct: 399 -KTAKNIKHIAIKTPYDIKEKALLLEDIILVKSNGGQVIIFTRTKLEADILCSEGSFKSL 457
Query: 384 PGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAY 443
A LHG+I QS RE T+ FR G F L+AT++A+RGLDI++V L+IQC PP Y
Sbjct: 458 SFA-VLHGNIAQSTREYTMQRFRQGMFQILIATDIASRGLDISNVDLVIQCFPPNYSAVY 516
Query: 444 IHRSGRTGRAGNTGVAVMLY-DPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAE 502
IHR+GRTGRA G +++LY + K + KIE+ G+KF + P + A A++
Sbjct: 517 IHRAGRTGRANKKGTSLVLYSNEDKQDLIKIEKNCGIKFNMETLPNNEQVFHCASAIASK 576
Query: 503 TITQVSDSVIPAFKSAAEELLNNSG---LSAAELLAKALA 539
+ V+ ++P F A+EL+N S + EL+++ LA
Sbjct: 577 KVENVNKEILPFFHDTAKELINKSNSLKIDQIELISRCLA 616
>gi|156094360|ref|XP_001613217.1| ATP-dependent helicase [Plasmodium vivax Sal-1]
gi|148802091|gb|EDL43490.1| ATP-dependent helicase, putative [Plasmodium vivax]
Length = 720
Score = 325 bits (833), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 197/494 (39%), Positives = 276/494 (55%), Gaps = 57/494 (11%)
Query: 92 EPEAGVEEQER----GESEHPNAVSRF----RISVPLREKLKSKGIESLFPIQAMTFDMV 143
+ AG E R GE+ P ++F I+ + + L SKGI + IQA +F +
Sbjct: 101 DSHAGGGEHNRLRSGGENCSPRVSNQFADVPEINPNIAKFLSSKGINQMTKIQAQSFRPI 160
Query: 144 LDGSDLVGRARTGQGKTLAFVLPILESL---------------------------TNGPT 176
+G D++GR+ TG GKTLAF LP++E L TN P
Sbjct: 161 YEGRDIIGRSETGSGKTLAFALPLVEKLYKVKMGRSGEGVSPSTPHLESANHFGGTNQPD 220
Query: 177 KASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKK 236
+ + PS+LVL PTREL+KQV F +YGG Y QE KL+K
Sbjct: 221 DS-------KNPSILVLEPTRELSKQVENTFKEISQFYNFNIMSIYGGESYVYQEAKLRK 273
Query: 237 GIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQ 296
GI+++ GTPGRI DH+ER N+ L ++K+ VLDEADEML +GF D+E IL + + + Q
Sbjct: 274 GIEILTGTPGRIIDHLERKNLSLQNIKYLVLDEADEMLNLGFTHDLERILSYI-NLKEAQ 332
Query: 297 TLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL--PCSSSARSQVIP 354
LL+SAT PSW+K IS+K++K + ID+V + K S N++HI + P ++ ++
Sbjct: 333 ILLYSATTPSWIKDISSKYMK-NPFFIDVVDSSN-KTSKNIKHIAIKTPYDIKEKALLLE 390
Query: 355 DIIRCYSSGGRTIIFTETKESASQLAD-----LLPGARALHGDIQQSQREVTLAGFRSGK 409
DII S+GG+ IIFT TK A L L A LHG+I Q+ RE T+ FR G
Sbjct: 391 DIILVKSNGGQVIIFTRTKLEADILCSEGSFKSLSFA-VLHGNIAQTTREHTMQRFRQGM 449
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KS 468
F L+AT++AARGLDI++V L+IQC PP E YIHR+GRTGRA G++V+L+ K
Sbjct: 450 FQILIATDIAARGLDISNVDLVIQCFPPNYAEIYIHRAGRTGRANKKGISVVLFSTEDKQ 509
Query: 469 SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSG- 527
+ KIE+ G+KF P D+ +A A++ I V+ SV+P F A EL+
Sbjct: 510 DLVKIEKNCGIKFSIEQLPNNEDVFTSASTMASKKIQNVNPSVLPFFHKTASELIEKCTQ 569
Query: 528 --LSAAELLAKALA 539
+ EL+A+ LA
Sbjct: 570 LQMDQTELVARCLA 583
>gi|167386672|ref|XP_001737862.1| ATP-dependent RNA helicase DDX50 [Entamoeba dispar SAW760]
gi|165899191|gb|EDR25838.1| ATP-dependent RNA helicase DDX50, putative [Entamoeba dispar
SAW760]
Length = 689
Score = 325 bits (832), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 200/523 (38%), Positives = 290/523 (55%), Gaps = 58/523 (11%)
Query: 46 KKESSKKRKESEIEEEEERSETSSEL----------GEPVNLKSEKEKKKKKKAKVEPEA 95
K++S K+ +++E+EER E S L G P+N +E + PE+
Sbjct: 2 KRQSLSNGKQRKVDEKEERIEKPSALKGFLIPVTKSGSPIN----EEINGSTPSPNIPES 57
Query: 96 GVEEQERGESEHPNAVSRFR--ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRA 153
+ + +P + R +S +E LK +GI SLFPIQ T+ + D+VG+A
Sbjct: 58 PMPDN------NPGSFDRMDPPVSESAQEMLKKRGINSLFPIQVSTYSPIYYRKDVVGKA 111
Query: 154 RTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGA 213
+TG GKT++F LP++E L ++ G+ P V+ L PTRELA Q+ E+F
Sbjct: 112 QTGSGKTISFTLPLMERL------RAENERKGKNPRVICLSPTRELAIQIAEEF------ 159
Query: 214 VGLTSC--------CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265
T C C+YGG Q KL+ G+DV++GTPGR++D +R + L S++
Sbjct: 160 ---TQCSCGKFKVICVYGGVDIQGQINKLQSGVDVIVGTPGRVRDLFDRQFLKLDSIETI 216
Query: 266 VLDEADEMLRMGFVEDVELIL----GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
VLDEADEML +GF E+V I+ G V + VQTLLFSAT+P+WVK IS K+L+ D +
Sbjct: 217 VLDEADEMLNIGFKEEVTQIMDFVHGSVPKESTVQTLLFSATMPAWVKEISEKYLRDDAE 276
Query: 322 TIDL-VGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA 380
ID+ VGN ++ N +H+ +++Q I D+IR Y GRTI+F +TK + A
Sbjct: 277 VIDVTVGNTQV--PKNAKHLACRIFYQSKTQTIADLIRVYGRTGRTIVFCDTKAECTDCA 334
Query: 381 ---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
+ + + LHGDIQQ QRE TL GFR KF LVAT+VAARGLDI+ V LII P
Sbjct: 335 IAINPIFECQQLHGDIQQKQREQTLNGFRENKFNVLVATDVAARGLDISGVDLIIMTHVP 394
Query: 438 RDVEAYIHRSGRTGRAGNTGVAVMLYDPRK-SSVSKIERESGVKFEHISAPQPADIAKAA 496
+D+ Y+HR+GRT RAG G + L+ ++ + IE + F+ I PQ A IA+
Sbjct: 395 KDIPQYVHRAGRTARAGKEGTTITLFTRKELPQLQLIENRIKIHFQRIGTPQKAQIAEVT 454
Query: 497 GVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALA 539
E I +V D+ F+ +++LL A +L K +A
Sbjct: 455 CGNLPEEIKEVPDATAELFRDISKKLLETG--DAETVLCKVIA 495
>gi|428169310|gb|EKX38245.1| hypothetical protein GUITHDRAFT_158516 [Guillardia theta CCMP2712]
Length = 397
Score = 324 bits (831), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 172/395 (43%), Positives = 248/395 (62%), Gaps = 18/395 (4%)
Query: 118 VPLREKLKSK----GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
VPL +K+K+K GI SLFP+Q TF ++DG D+V R+RTG GKT+AF LP++E +
Sbjct: 6 VPLSKKVKAKLKECGITSLFPVQVKTFQTLMDGKDVVVRSRTGSGKTIAFALPVIEKIL- 64
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
A+K +GR PS LV+ PTRELA Q+ +F V S C+YGG Q
Sbjct: 65 ----ANKTRKHGRLPSCLVIAPTRELAIQIDREFTRIQPEVA--STCVYGGVSIGMQVSA 118
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L+KG+DVV+GTPGR+ DH+ G +D+S+++ +LDEADEML+MGF +DVE I+ + +
Sbjct: 119 LRKGVDVVVGTPGRLIDHLVNGTLDVSAVETFILDEADEMLKMGFQDDVERIIEYLPPSK 178
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
QT L+SAT+P+WVK ++ K+ K D D+VGN+ + S + HI + C + + I
Sbjct: 179 --QTNLWSATMPTWVKDLAQKYCK-DVVFFDMVGNDSTRTSITIEHIAIACGYDSHANAI 235
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVTLAGFRSGKF 410
+++ Y GGR ++F TK +LA+ L AR +HGD+ Q QRE TL FRSGKF
Sbjct: 236 SRVVKKYGKGGRVLVFCRTKLEVDRLANHPSLKTTARVIHGDVSQLQRERTLQDFRSGKF 295
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD-PRKSS 469
+ LVAT+VAARG+D+ +V+L+IQ P D ++HRSGRTGRAG GV+V+ Y +
Sbjct: 296 LILVATDVAARGIDVPEVELVIQTCVPEDSNTFVHRSGRTGRAGRKGVSVVFYSGGEERD 355
Query: 470 VSKIERESGVKFEHISAPQPADIAKAAGVEAAETI 504
+ +IE E G++F P+ + AA+ +
Sbjct: 356 LLEIEEELGIQFHLPVGTMPSSSPAHCTLRAAQRV 390
>gi|168000763|ref|XP_001753085.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695784|gb|EDQ82126.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 638
Score = 324 bits (830), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 187/478 (39%), Positives = 279/478 (58%), Gaps = 16/478 (3%)
Query: 94 EAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRA 153
E V ++ G + A+ +S + L +GI LFPIQ + + G DL+ RA
Sbjct: 11 EGFVGKKNAGAGKDELAIDSLGVSEDIVNALAKRGITHLFPIQRAVLEPAMKGQDLIARA 70
Query: 154 RTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGA 213
+TG GKTLAF +PI++ + + +++ + +GR+P LVL PTRELAKQV +F A
Sbjct: 71 KTGTGKTLAFGIPIIQHIIDAHKESAPR--HGRSPRALVLAPTRELAKQVEREF--MESA 126
Query: 214 VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273
L++ C+YGG Q+ +L++G+D+ +GTPGRI D I+RG++ L ++ F VLDEAD+M
Sbjct: 127 PMLSTVCVYGGVSISMQQRQLERGVDIAVGTPGRIIDLIDRGSLKLQNVNFLVLDEADQM 186
Query: 274 LRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKA 333
L +GF EDVE IL ++ Q++LFSAT+P WVK +S K+L I+LVG+ K
Sbjct: 187 LAVGFEEDVERILQQL--PKNRQSMLFSATMPKWVKELSGKYLNR-PLMINLVGDADDKL 243
Query: 334 STNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA---DLLPGARALH 390
+ + ++ + ++A+ ++ D+I ++ GG+TI+FT+TK A +A L ALH
Sbjct: 244 AEGITNLAIQLPATAKRSILSDLITVHAKGGKTIVFTQTKRDADDVAMAMGNLVACGALH 303
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
GDI Q QRE TL FR G LVAT+VAARGLD+ +V L+I E P D E ++HR+GRT
Sbjct: 304 GDISQLQREKTLNAFREGNITVLVATDVAARGLDVPNVDLVIHYEIPNDSETFVHRTGRT 363
Query: 451 GRAGNTGVAVMLY-DPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSD 509
GRAG TG ++++ + + ++ IE +F+ I AP D+ +A+ + + V +
Sbjct: 364 GRAGKTGTNILMFTNQQMRTMRTIESNVKCRFQMIGAPHVKDVMQASFDQVRGALKNVDE 423
Query: 510 SVIPAFKSAAEELLNNSGLSAAELLAKALAKAVVSAFLFSSSSNSLSLTSGTMCFFRL 567
S+ F+ AE LL G A A ALA +S F S SL M RL
Sbjct: 424 SLAAEFRPTAESLLEEKGPDA---FAAALAH--LSGFSQLPPSRSLLTHEPGMTTLRL 476
>gi|221057271|ref|XP_002259773.1| ATP-dependent helicase [Plasmodium knowlesi strain H]
gi|193809845|emb|CAQ40549.1| ATP-dependent helicase, putative [Plasmodium knowlesi strain H]
Length = 722
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 187/448 (41%), Positives = 262/448 (58%), Gaps = 36/448 (8%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN--------GP 175
L SKGI + IQA +F + +G D++GR+ TG GKTLAF LP++E L G
Sbjct: 142 LASKGINQMTKIQAQSFRPIYEGRDIIGRSETGSGKTLAFALPLVEKLYKVKMGRSGEGV 201
Query: 176 TKAS-------------KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLY 222
T ++ ++ + PS+LVL PTREL+KQV F +Y
Sbjct: 202 TSSTPHMEKSANAFDGRNQSDDNKNPSILVLEPTRELSKQVENTFKEISQFYNFNIMSIY 261
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG Y QE KL+KGI+++ GTPGRI DH+E+ N+ L ++K+ VLDEADEML +GF D+
Sbjct: 262 GGESYVYQEAKLRKGIEILTGTPGRIIDHLEKKNLSLQNIKYLVLDEADEMLNLGFTHDL 321
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E IL + + + Q LL+SAT PSWVK IS++++K + ID+V + K S N++HI +
Sbjct: 322 ERILSYI-NLKEAQILLYSATTPSWVKDISSRYMK-NPFFIDVVDSSN-KTSKNIKHIAI 378
Query: 343 --PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLAD-----LLPGARALHGDIQQ 395
P ++ ++ DII S+GG+ IIFT TK A L L A LHG+I Q
Sbjct: 379 KTPYDIKEKALLLEDIILVKSNGGQVIIFTRTKLEADILCSEGSFKSLSFA-VLHGNIAQ 437
Query: 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN 455
+ RE T+ FR G F L+AT++AARGLDI++V L+IQC PP E YIHR+GRTGRA
Sbjct: 438 TTREHTMQRFRQGMFQILIATDIAARGLDISNVDLVIQCFPPNYAEIYIHRAGRTGRANK 497
Query: 456 TGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPA 514
GV+V+L+ K + KIE+ G+KF P D+ +A A++ I V+ SV+P
Sbjct: 498 KGVSVVLFSSEDKQDLIKIEKNCGIKFSIEQLPNNEDVFTSASTMASKKIENVNPSVLPF 557
Query: 515 FKSAAEELLNNSG---LSAAELLAKALA 539
F A EL+ + EL+A+ LA
Sbjct: 558 FHKTASELIEKCTQLQMDQTELVARCLA 585
>gi|357111676|ref|XP_003557638.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like
[Brachypodium distachyon]
Length = 604
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 174/400 (43%), Positives = 259/400 (64%), Gaps = 16/400 (4%)
Query: 101 ERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKT 160
E G E V++ IS + E+L ++GI LFPIQ + + G D++GRARTG GKT
Sbjct: 76 EAGAGEDGLEVAKLGISPRIVERLAARGITRLFPIQRAVLEPAMQGKDMIGRARTGTGKT 135
Query: 161 LAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC 220
LAF +PI++ + + ++K G GR P ++L PTRELA+QV ++F + L + C
Sbjct: 136 LAFGIPIMDRIL----RHNEKNGTGRNPLAIILAPTRELARQVEKEFKE---SAPLDTLC 188
Query: 221 LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVE 280
+YGG P + Q L G+DVV+GTPGRI D + RGN++LS ++F VLDEAD+ML +GF E
Sbjct: 189 VYGGVPINQQMRTLNYGVDVVVGTPGRIIDLLRRGNLNLSEIQFVVLDEADQMLAVGFDE 248
Query: 281 DVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340
DVE+I+ K+ Q++LFSAT+PSW++ +S ++LK D IDLVG K +
Sbjct: 249 DVEVIMEKL--PQNRQSMLFSATMPSWIRKLSNQYLK-DPVIIDLVGESDQKLPEGISLY 305
Query: 341 VLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQ 397
+ + +S ++ +I+ +++GG+ I+FT+TK A +LA + +ALHGDI Q+Q
Sbjct: 306 SIASENYGKSSILGTLIKEHANGGKCIVFTQTKREADRLAYSMGRSYACQALHGDITQNQ 365
Query: 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG 457
RE TL+GFR G+F LVAT+VAARGLDI +V L++ E P E ++HRSGRT RAG G
Sbjct: 366 RERTLSGFREGRFNILVATDVAARGLDIPNVDLVVHYEIPNSSELFVHRSGRTARAGKKG 425
Query: 458 VAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAA 496
+A+++Y +S +V IE++ G +F + P+ + A+AA
Sbjct: 426 IAILMYTYEQSRAVRVIEQDIGCRFTEL--PKISGTAEAA 463
>gi|82539303|ref|XP_724049.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23478563|gb|EAA15614.1| Unknown protein [Plasmodium yoelii yoelii]
Length = 635
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 194/507 (38%), Positives = 291/507 (57%), Gaps = 47/507 (9%)
Query: 91 VEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLV 150
V+ E ++++E+ E +++ + I+ + E L++KGI+ + IQ+ +F + +G+D++
Sbjct: 92 VDEENILQDEEKKNKELFSSIPQ--INQKIVEFLETKGIKYMTKIQSKSFMPIYEGNDII 149
Query: 151 GRARTGQGKTLAFVLPILE---------------------SLTNGPTKASKKTGYGRAPS 189
GR+ TG GKT+AF LP++E S+ + + +K + P
Sbjct: 150 GRSETGSGKTIAFALPLVEKLYKNIESQKKIIKNKSNEINSIQHLSEEGNKNDNMDKDPY 209
Query: 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIK 249
+LVL PTREL+KQV F +YGG Y QE KL+KGI ++ GTPGRI
Sbjct: 210 ILVLEPTRELSKQVETTFKEISQFYNFNIMSIYGGESYTYQENKLRKGIQILTGTPGRII 269
Query: 250 DHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG--KVEDANKVQTLLFSATLPSW 307
DHIE+ N+ L ++K+ VLDEADEML +GF D+E IL ++DA Q LL+SAT PSW
Sbjct: 270 DHIEKKNLSLKNIKYVVLDEADEMLNLGFTHDIERILSYINIKDA---QVLLYSATTPSW 326
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL--PCSSSARSQVIPDIIRCYSSGGR 365
+K IS+K+LK + ID++ N K S ++HI + P ++ ++ DII S+GG+
Sbjct: 327 IKDISSKYLK-NPIYIDVI-NTINKTSKTIQHIAIKTPYDIKEKAMLLEDIILVKSNGGQ 384
Query: 366 TIIFTETKESASQLA-----DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
IIFT TK A LA + L LHG+I QS RE T+ FR+G F L+AT++AA
Sbjct: 385 VIIFTRTKLEADILASEGSFNYL-NFSVLHGNIAQSTREHTMQRFRNGMFQVLIATDIAA 443
Query: 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DPRKSSVSKIERESGV 479
RGLDI++V LIIQC PP YIHRSGRTGRA G++++L+ + K+ V KIE+ G+
Sbjct: 444 RGLDISNVDLIIQCYPPTYPAIYIHRSGRTGRANKKGISIVLFSNEDKNDVIKIEKNCGI 503
Query: 480 KFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGL---SAAELLAK 536
KF S P + + + I V+ V+P F +A EL+ S L L+++
Sbjct: 504 KFLTESLPSNEQVFHSVSKIILKKIENVNSEVLPFFYKSANELIEKSNLLNIDQINLISR 563
Query: 537 ALA-----KAVVSAFLFSSSSNSLSLT 558
LA + + L S S++++LT
Sbjct: 564 CLAIISKKEYIKKRSLISGLSDTITLT 590
>gi|449517104|ref|XP_004165586.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like, partial [Cucumis sativus]
Length = 726
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 177/419 (42%), Positives = 269/419 (64%), Gaps = 10/419 (2%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A+S+ + L + L+ +GI LFPIQ L+G DL+ RA+TG GKTLAF +PIL+
Sbjct: 113 AISKLNLPQRLTDALQKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPILK 172
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
LT ++ R P VLVL PTRELAKQV ++ + A L + C+YGG Y
Sbjct: 173 KLTED-DESRSLRRRSRLPRVLVLTPTRELAKQVEKE--IKESAPYLNTVCVYGGVSYIT 229
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q+ L +G+DVV+GTPGR+ D I +++L +++ VLDEAD+ML +GF EDVE+IL K+
Sbjct: 230 QQNALSRGVDVVVGTPGRLIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVILEKL 289
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
++ Q +LFSAT+P+WVK ++ K+L + TIDLVG++ K + ++ + +++++
Sbjct: 290 --PSQRQNMLFSATMPTWVKKLARKYL-DNPLTIDLVGDQDEKLAEGIKLHAILTTATSK 346
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFR 406
++ D++ Y+ GG+TI+FT+TK A +++ L + ALHGDI Q QRE TL GFR
Sbjct: 347 QTILRDLVTVYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGFR 406
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DP 465
GKF LVAT+VA+RGLDI +V L+I E P D E ++HRSGRTGRAG G A++++ +
Sbjct: 407 QGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNS 466
Query: 466 RKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLN 524
++ +V +ER+ G KFE + P ++ K++ + T+ V I F A++L++
Sbjct: 467 QRRTVRSLERDVGCKFEFANPPGMEEVLKSSAEQVVVTLRGVHPESIEYFTPTAQKLID 525
>gi|224089849|ref|XP_002308835.1| predicted protein [Populus trichocarpa]
gi|222854811|gb|EEE92358.1| predicted protein [Populus trichocarpa]
Length = 556
Score = 322 bits (826), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 177/397 (44%), Positives = 253/397 (63%), Gaps = 17/397 (4%)
Query: 94 EAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRA 153
+ G +E++ SE +S IS + L KGI LFPIQ + + G D+ GRA
Sbjct: 52 DYGSDEEKGKGSEEGLEISNLGISKEIVNSLAKKGITKLFPIQKAVLEPAMQGKDMFGRA 111
Query: 154 RTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGA 213
RTG GKTLAF +PIL+ + + +K+ G GR P +V+ PTRELA+QV ++F + A
Sbjct: 112 RTGTGKTLAFGIPILDKII----EFNKQHGKGRNPLAMVMAPTRELARQVQKEF--HDSA 165
Query: 214 VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273
L + CLYGG P +Q +L+ G+DVV+GTPGRI D ++RG+++LS +K+ VLDEAD+M
Sbjct: 166 PSLDTICLYGGVPISSQMRELEYGVDVVVGTPGRIIDLMKRGSLNLSEIKYVVLDEADQM 225
Query: 274 LRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKA 333
L +GFV+D+E IL ++ K ++ FSAT+PSW+K + K+LK D TIDLVG+ K
Sbjct: 226 LGVGFVDDIETILSRL--PKKRHSMCFSATMPSWIKQLVRKYLK-DPLTIDLVGDSDRKL 282
Query: 334 STNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG---ARALH 390
+ + + A++ ++ +I ++ GG+ I+FTETK A +LA + ALH
Sbjct: 283 ADGITLYSIASDMYAKASILGPLITEHAKGGKCIVFTETKRDADRLAYAMAKNHKCEALH 342
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
GDI Q+ RE TL+GFR G F LVAT+VAARGLD+ +V LII PR E ++HRSGRT
Sbjct: 343 GDISQNVRERTLSGFREGHFNILVATDVAARGLDVPNVDLIIHYALPRCSETFVHRSGRT 402
Query: 451 GRAGNTGVAVMLY---DPRKSSVSKIERESGVKFEHI 484
GRAG G A+++Y D R+ V IER++G +F +
Sbjct: 403 GRAGKKGTAILIYTQDDARQ--VKLIERDTGCRFSEL 437
>gi|143456572|sp|Q0D8N0.2|RH53_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 53
gi|218199081|gb|EEC81508.1| hypothetical protein OsI_24871 [Oryza sativa Indica Group]
gi|222636421|gb|EEE66553.1| hypothetical protein OsJ_23067 [Oryza sativa Japonica Group]
Length = 602
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 176/404 (43%), Positives = 256/404 (63%), Gaps = 21/404 (5%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
V+R IS + E+L ++GI LFPIQ D + G D++GRARTG GKTLAF +PI++
Sbjct: 86 VARLGISPWIVERLAARGITRLFPIQRAVLDPAMQGKDMIGRARTGTGKTLAFGIPIMDR 145
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ + ++K G GR P ++L PTRELA+QV ++F + L S C+YGG P Q
Sbjct: 146 IL----RHNEKNGSGRNPLAIILAPTRELARQVEKEFKE---SAPLDSLCVYGGVPISHQ 198
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
L G+DVV+GTPGRI D + RG ++LS ++F VLDEAD+ML +GF EDVE+I+ +
Sbjct: 199 MRALNYGVDVVVGTPGRIIDLLRRGVLNLSEIQFVVLDEADQMLAVGFDEDVEVIMENLP 258
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
Q++LFSAT+PSW++ I++K+LK D IDLVG+E K + + +
Sbjct: 259 --QNRQSMLFSATMPSWIRKITSKYLK-DPIIIDLVGDEDQKLPEGISLYSIASEHYGKP 315
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRS 407
++ +I+ +++GG+ I+FT+TK A +LA + +ALHGDI Q+QRE TL+GFR
Sbjct: 316 SILGPLIKEHANGGKCIVFTQTKREADRLAYAMGRSYACQALHGDISQNQRERTLSGFRD 375
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DPR 466
G+F LVAT+VAARGLDI +V L+I E P E ++HRSGRT RAG G A+++Y + +
Sbjct: 376 GRFNILVATDVAARGLDIPNVDLVIHYELPNTSELFVHRSGRTARAGKKGSAILIYTNDQ 435
Query: 467 KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDS 510
+V IE++ G KF + + AD EA++ V D+
Sbjct: 436 ARAVRIIEQDIGCKFTELPKIEVAD-------EASDMFNVVRDN 472
>gi|449435589|ref|XP_004135577.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Cucumis sativus]
Length = 748
Score = 322 bits (824), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 177/419 (42%), Positives = 269/419 (64%), Gaps = 10/419 (2%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A+S+ + L + L+ +GI LFPIQ L+G DL+ RA+TG GKTLAF +PIL+
Sbjct: 113 AISKLNLPQRLTDALQKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPILK 172
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
LT ++ R P VLVL PTRELAKQV ++ + A L + C+YGG Y
Sbjct: 173 KLTED-DESRSLRRRSRLPRVLVLTPTRELAKQVEKE--IKESAPYLNTVCVYGGVSYIT 229
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q+ L +G+DVV+GTPGR+ D I +++L +++ VLDEAD+ML +GF EDVE+IL K+
Sbjct: 230 QQNALSRGVDVVVGTPGRLIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVILEKL 289
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
++ Q +LFSAT+P+WVK ++ K+L + TIDLVG++ K + ++ + +++++
Sbjct: 290 --PSQRQNMLFSATMPTWVKKLARKYL-DNPLTIDLVGDQDEKLAEGIKLHAILTTATSK 346
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFR 406
++ D++ Y+ GG+TI+FT+TK A +++ L + ALHGDI Q QRE TL GFR
Sbjct: 347 QTILRDLVTVYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGFR 406
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DP 465
GKF LVAT+VA+RGLDI +V L+I E P D E ++HRSGRTGRAG G A++++ +
Sbjct: 407 QGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNS 466
Query: 466 RKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLN 524
++ +V +ER+ G KFE + P ++ K++ + T+ V I F A++L++
Sbjct: 467 QRRTVRSLERDVGCKFEFANPPGMEEVLKSSAEQVVVTLRGVHPESIEYFTPTAQKLID 525
>gi|452824703|gb|EME31704.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 758
Score = 321 bits (823), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 178/434 (41%), Positives = 262/434 (60%), Gaps = 21/434 (4%)
Query: 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
+E P + F++S + E L+ +G+ PIQ+ TF+++ G D++GR+RTG GKTLAFV
Sbjct: 186 NETPVPFTSFQLSKKILEILEERGLRDATPIQSATFELIYSGRDIIGRSRTGTGKTLAFV 245
Query: 165 LPILESLTNGPTKASKKTGYGRAPSV--LVLLPTRELAKQVHEDFDVYGGAVGLTSCCLY 222
LPI++ L + + R + LVL PTRELAKQV ++F + + C +
Sbjct: 246 LPIMQKLV----EQLETHNIDRVSEIQCLVLAPTRELAKQVEQEFSAFAKCFRFRTSCFF 301
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG+ Y Q+ +K+GID+++ TPGR+ D +ERG++DL +KF VLDEADEML MGF ED+
Sbjct: 302 GGSSYEVQQRAIKRGIDILVATPGRLIDLLERGSVDLLKVKFFVLDEADEMLSMGFAEDI 361
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
+ I + + QTLLFSAT+P WV+ ++ K K++ +D +GN+ K ST V HI L
Sbjct: 362 DKISTYLPPTRERQTLLFSATIPPWVQELA-KSNKNNPIIVDAIGNKDTKTSTTVEHIAL 420
Query: 343 --PCSSSARSQVIPDIIRCYS---SGGRTIIFTETKESASQLAD---LLPG-ARALHGDI 393
P + +R ++ +I YS + R I+F TK L + G A+ALHGDI
Sbjct: 421 RVPPTELSRKLILESVISVYSAEMTNFRCIVFARTKAEVDSLVSSGRIHNGAAQALHGDI 480
Query: 394 QQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA 453
Q QRE+TL+ FR G F L+AT+VAARGLDIN V L+IQ P D++ YIHR+GRTGRA
Sbjct: 481 TQKQREITLSKFREGSFQVLIATDVAARGLDINGVDLVIQYRVPEDIDMYIHRAGRTGRA 540
Query: 454 GNTGVAVMLY-DPRKSSVSKIERESGVKFEHISAPQPADI--AKAAG-VEAAETIT-QVS 508
G G ++LY D ++ ++ +E ++F S P + KA G + A++ + +
Sbjct: 541 GRQGTCIILYTDEERNKLTLMENVCKIRFRLESPPSIQQVIETKANGFLRASQAVEGKWV 600
Query: 509 DSVIPAFKSAAEEL 522
+ +IP K E L
Sbjct: 601 EPLIPVVKEYIESL 614
>gi|296086337|emb|CBI31778.3| unnamed protein product [Vitis vinifera]
Length = 568
Score = 321 bits (822), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 176/380 (46%), Positives = 248/380 (65%), Gaps = 17/380 (4%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
+S+ I+ + L +KGI LFPIQ + + G D++GRARTG GKTLAF +PI++
Sbjct: 117 ISKLGIAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDK 176
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ + + K G GR P LVL PTRELA+QV ++F A L + C+YGG P Q
Sbjct: 177 VI----QYNAKHGRGRNPLALVLAPTRELARQVEKEF--CESAPNLDTLCVYGGTPISRQ 230
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
L G+DVV+GTPGRI D I+RG ++LS ++F VLDEAD+ML +GF EDVE+IL K+
Sbjct: 231 MNSLDYGVDVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLP 290
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
N+ Q+++FSAT+PSW++ ++ K+LK + TIDLVG+ K + + + ++
Sbjct: 291 Q-NR-QSMMFSATMPSWIRKLTQKYLK-NPLTIDLVGDSDQKLAEGISLYSIASEMYEKA 347
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGDIQQSQREVTLAGF 405
++ +I ++ GG+ I+FT+TK A +LA + AR ALHGDI QSQRE TL+GF
Sbjct: 348 SIVGPLITEHAKGGKCIVFTQTKRDADRLAYAM--ARNFRCEALHGDISQSQRERTLSGF 405
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
R G F LVAT+VAARGLDI +V LII E P E ++HRSGRTGRAG G A+++Y
Sbjct: 406 RDGHFNVLVATDVAARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAGKKGTAILIYAE 465
Query: 466 RKS-SVSKIERESGVKFEHI 484
+++ +V IER+ G KF +
Sbjct: 466 QQARTVRFIERDIGCKFSEL 485
>gi|147770303|emb|CAN60235.1| hypothetical protein VITISV_028850 [Vitis vinifera]
Length = 666
Score = 321 bits (822), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 175/380 (46%), Positives = 246/380 (64%), Gaps = 17/380 (4%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
+S+ I+ + L +KGI LFPIQ + + G D++GRARTG GKTLAF +PI++
Sbjct: 117 ISKLGIAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDK 176
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ + + K G GR P LVL PTRELA+QV ++F A L + C+YGG P Q
Sbjct: 177 VI----QYNAKHGRGRNPLALVLAPTRELARQVEKEFXE--SAPNLDTLCVYGGTPISRQ 230
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
L G+DVV+GTPGRI D I+RG ++LS ++F VLDEAD+ML +GF EDVE+IL K+
Sbjct: 231 MNSLDYGVDVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKL- 289
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
Q+++FSAT+PSW++ ++ K+LK + TIDLVG+ K + + + ++
Sbjct: 290 -PQNRQSMMFSATMPSWIRKLTQKYLK-NPLTIDLVGDSDQKLAEGISLYSIASEMYEKA 347
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGDIQQSQREVTLAGF 405
++ +I ++ GG+ I+FT+TK A +LA + AR ALHGDI QSQRE TL+GF
Sbjct: 348 SIVGPLITEHAKGGKCIVFTQTKRDADRLAYAM--ARNFRCEALHGDISQSQRERTLSGF 405
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
R G F LVAT+VAARGLDI +V LII E P E ++HRSGRTGRAG G A+++Y
Sbjct: 406 RDGHFNVLVATDVAARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAGKKGTAILIYAE 465
Query: 466 RKS-SVSKIERESGVKFEHI 484
+++ +V IER+ G KF +
Sbjct: 466 QQARTVRFIERDIGCKFSEL 485
>gi|225446899|ref|XP_002284103.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Vitis
vinifera]
Length = 666
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 175/380 (46%), Positives = 246/380 (64%), Gaps = 17/380 (4%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
+S+ I+ + L +KGI LFPIQ + + G D++GRARTG GKTLAF +PI++
Sbjct: 117 ISKLGIAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDK 176
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ + + K G GR P LVL PTRELA+QV ++F A L + C+YGG P Q
Sbjct: 177 VI----QYNAKHGRGRNPLALVLAPTRELARQVEKEF--CESAPNLDTLCVYGGTPISRQ 230
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
L G+DVV+GTPGRI D I+RG ++LS ++F VLDEAD+ML +GF EDVE+IL K+
Sbjct: 231 MNSLDYGVDVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKL- 289
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
Q+++FSAT+PSW++ ++ K+LK + TIDLVG+ K + + + ++
Sbjct: 290 -PQNRQSMMFSATMPSWIRKLTQKYLK-NPLTIDLVGDSDQKLAEGISLYSIASEMYEKA 347
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGDIQQSQREVTLAGF 405
++ +I ++ GG+ I+FT+TK A +LA + AR ALHGDI QSQRE TL+GF
Sbjct: 348 SIVGPLITEHAKGGKCIVFTQTKRDADRLAYAM--ARNFRCEALHGDISQSQRERTLSGF 405
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
R G F LVAT+VAARGLDI +V LII E P E ++HRSGRTGRAG G A+++Y
Sbjct: 406 RDGHFNVLVATDVAARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAGKKGTAILIYAE 465
Query: 466 RKS-SVSKIERESGVKFEHI 484
+++ +V IER+ G KF +
Sbjct: 466 QQARTVRFIERDIGCKFSEL 485
>gi|449703528|gb|EMD43965.1| ATP-dependent RNA helicase, putative [Entamoeba histolytica KU27]
Length = 695
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 197/523 (37%), Positives = 289/523 (55%), Gaps = 58/523 (11%)
Query: 46 KKESSKKRKESEIEEEEERSETSSEL----------GEPVNLKSEKEKKKKKKAKVEPEA 95
K++S K +I+ ++E+ E S L G P+N +E + PE+
Sbjct: 2 KRQSLSNGKHRKIDGDDEQIEKPSALKGFLIPVTKTGSPIN----EELNGSTPSPNIPES 57
Query: 96 GVEEQERGESEHPNAVSRFR--ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRA 153
+ + ++P + R +S +E LK +GI SLFPIQ T+ + D+VG+A
Sbjct: 58 PMPD------DNPGSFDRMDPPVSESAQEMLKKRGINSLFPIQVSTYSPIYYRKDVVGKA 111
Query: 154 RTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGA 213
+TG GKT++F LP++E L ++ G+ P V+ L PTRELA Q+ E+F
Sbjct: 112 QTGSGKTISFTLPLMERL------RAENERKGKNPRVICLSPTRELAIQIAEEF------ 159
Query: 214 VGLTSC--------CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265
T C C+YGG Q KL+ G+DV++GTPGR++D +R + L S++
Sbjct: 160 ---TQCSCGKFKVICVYGGVDIQGQINKLQSGVDVIVGTPGRVRDLFDRQFLKLDSIETI 216
Query: 266 VLDEADEMLRMGFVEDVELIL----GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
VLDEADEML +GF E+V I+ G V + VQTLLFSAT+P+WVK IS K+L+ D +
Sbjct: 217 VLDEADEMLNIGFKEEVTQIMDFVHGSVPKESTVQTLLFSATMPAWVKEISEKYLRDDAE 276
Query: 322 TIDL-VGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA 380
ID+ VGN ++ N +H+ +++Q I D+IR Y GRTI+F +TK + A
Sbjct: 277 VIDVTVGNTQVPK--NAKHLACRIFYQSKTQTIADLIRVYGRTGRTIVFCDTKAECTDCA 334
Query: 381 ---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
+ + + LHGDIQQ QRE TL GFR KF LVAT+VAARGLDI+ V LII P
Sbjct: 335 IAINPIFECQQLHGDIQQKQREQTLNGFRENKFNVLVATDVAARGLDISGVDLIIMTHVP 394
Query: 438 RDVEAYIHRSGRTGRAGNTGVAVMLYDPRK-SSVSKIERESGVKFEHISAPQPADIAKAA 496
+D+ Y+HR+GRT RAG G + L+ ++ + IE + F+ I PQ A IA+
Sbjct: 395 KDIPQYVHRAGRTARAGKEGTTITLFTRKELPQLQLIESRIKIHFQRIGTPQKAQIAEVT 454
Query: 497 GVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALA 539
E I ++ D+ F+ +++LL A +L K +A
Sbjct: 455 CGNLPEEIKEIPDATAELFRDISKKLLETG--DAETVLCKVIA 495
>gi|183234688|ref|XP_649929.2| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
gi|169800959|gb|EAL44543.2| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
Length = 723
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 197/523 (37%), Positives = 289/523 (55%), Gaps = 58/523 (11%)
Query: 46 KKESSKKRKESEIEEEEERSETSSEL----------GEPVNLKSEKEKKKKKKAKVEPEA 95
K++S K +I+ ++E+ E S L G P+N +E + PE+
Sbjct: 2 KRQSLSNGKHRKIDGDDEQIEKPSALKGFLIPVTKTGSPIN----EELNGSTPSPNIPES 57
Query: 96 GVEEQERGESEHPNAVSRFR--ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRA 153
+ + ++P + R +S +E LK +GI SLFPIQ T+ + D+VG+A
Sbjct: 58 PMPD------DNPGSFDRMDPPVSESAQEMLKKRGINSLFPIQVSTYSPIYYRKDVVGKA 111
Query: 154 RTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGA 213
+TG GKT++F LP++E L ++ G+ P V+ L PTRELA Q+ E+F
Sbjct: 112 QTGSGKTISFTLPLMERL------RAENERKGKNPRVICLSPTRELAIQIAEEF------ 159
Query: 214 VGLTSC--------CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265
T C C+YGG Q KL+ G+DV++GTPGR++D +R + L S++
Sbjct: 160 ---TQCSCGKFKVICVYGGVDIQGQINKLQSGVDVIVGTPGRVRDLFDRQFLKLDSIETI 216
Query: 266 VLDEADEMLRMGFVEDVELIL----GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
VLDEADEML +GF E+V I+ G V + VQTLLFSAT+P+WVK IS K+L+ D +
Sbjct: 217 VLDEADEMLNIGFKEEVTQIMDFVHGSVPKESTVQTLLFSATMPAWVKEISEKYLRDDAE 276
Query: 322 TIDL-VGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA 380
ID+ VGN ++ N +H+ +++Q I D+IR Y GRTI+F +TK + A
Sbjct: 277 VIDVTVGNTQVPK--NAKHLACRIFYQSKTQTIADLIRVYGRTGRTIVFCDTKAECTDCA 334
Query: 381 ---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
+ + + LHGDIQQ QRE TL GFR KF LVAT+VAARGLDI+ V LII P
Sbjct: 335 IAINPIFECQQLHGDIQQKQREQTLNGFRENKFNVLVATDVAARGLDISGVDLIIMTHVP 394
Query: 438 RDVEAYIHRSGRTGRAGNTGVAVMLYDPRK-SSVSKIERESGVKFEHISAPQPADIAKAA 496
+D+ Y+HR+GRT RAG G + L+ ++ + IE + F+ I PQ A IA+
Sbjct: 395 KDIPQYVHRAGRTARAGKEGTTITLFTRKELPQLQLIESRIKIHFQRIGTPQKAQIAEVT 454
Query: 497 GVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALA 539
E I ++ D+ F+ +++LL A +L K +A
Sbjct: 455 CGNLPEEIKEIPDATAELFRDISKKLLETG--DAETVLCKVIA 495
>gi|407042825|gb|EKE41557.1| DEAD/DEAH box helicase, putative [Entamoeba nuttalli P19]
Length = 667
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 197/523 (37%), Positives = 289/523 (55%), Gaps = 58/523 (11%)
Query: 46 KKESSKKRKESEIEEEEERSETSSEL----------GEPVNLKSEKEKKKKKKAKVEPEA 95
K++S K +I+ ++E+ E S L G P+N +E + PE+
Sbjct: 2 KRQSLSNGKHRKIDGDDEQIEKPSALKGFLIPVTKTGSPIN----EELNGSTPSPNIPES 57
Query: 96 GVEEQERGESEHPNAVSRFR--ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRA 153
+ + ++P + R +S +E LK +GI SLFPIQ T+ + D+VG+A
Sbjct: 58 PMPD------DNPGSFDRMDPPVSESAQEMLKKRGINSLFPIQVSTYSPIYYRKDVVGKA 111
Query: 154 RTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGA 213
+TG GKT++F LP++E L ++ G+ P V+ L PTRELA Q+ E+F
Sbjct: 112 QTGSGKTISFALPLMERL------RAENERKGKNPRVICLSPTRELAIQIAEEF------ 159
Query: 214 VGLTSC--------CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265
T C C+YGG Q KL+ G+DV++GTPGR++D +R + L S++
Sbjct: 160 ---TQCSCGKFKVICVYGGVDIQGQINKLQSGVDVIVGTPGRVRDLFDRQFLKLDSIETI 216
Query: 266 VLDEADEMLRMGFVEDVELIL----GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
VLDEADEML +GF E+V I+ G V + VQTLLFSAT+P+WVK IS K+L+ D +
Sbjct: 217 VLDEADEMLNIGFKEEVTQIMDFVHGSVPKESTVQTLLFSATMPAWVKEISEKYLRDDAE 276
Query: 322 TIDL-VGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA 380
ID+ VGN ++ N +H+ +++Q I D+IR Y GRTI+F +TK + A
Sbjct: 277 VIDVTVGNTQV--PKNAKHLACRIFYQSKTQTIADLIRVYGRTGRTIVFCDTKAECTDCA 334
Query: 381 ---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
+ + + LHGDIQQ QRE TL GFR KF LVAT+VAARGLDI+ V LII P
Sbjct: 335 IAINPIFECQQLHGDIQQKQREQTLNGFRENKFNVLVATDVAARGLDISGVDLIIMTHVP 394
Query: 438 RDVEAYIHRSGRTGRAGNTGVAVMLYDPRK-SSVSKIERESGVKFEHISAPQPADIAKAA 496
+D+ Y+HR+GRT RAG G + L+ ++ + IE + F+ I PQ A IA+
Sbjct: 395 KDIPQYVHRAGRTARAGKEGTTITLFTRKELPQLQLIESRIKIHFQRIGTPQKAQIAEVT 454
Query: 497 GVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALA 539
E I ++ D+ F+ +++LL A +L K +A
Sbjct: 455 CGNLPEEIKEIPDATAELFRDISKKLLETG--DAETVLCKVIA 495
>gi|326527477|dbj|BAK08013.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 614
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 169/378 (44%), Positives = 248/378 (65%), Gaps = 14/378 (3%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
V++ IS + ++L +KGI LFPIQ + + G D+VGRA+TG GKTLAF +PI+++
Sbjct: 107 VAKLGISSEIVKRLAAKGITKLFPIQKAVLEPAMQGKDMVGRAKTGTGKTLAFGIPIMDA 166
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ + ++ GR P + L PTRELAKQV ++F + L + C+YGG P Q
Sbjct: 167 II----RHNEINKPGRLPLAICLAPTRELAKQVDKEFV---DSSPLQTLCVYGGTPIQQQ 219
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
L G+DVV+GTPGR+ D ++RG ++LS ++F VLDEAD+ML +GF EDVE+IL KV
Sbjct: 220 MRALDYGVDVVVGTPGRVIDLLKRGALNLSMVQFVVLDEADQMLSVGFDEDVEIILNKVP 279
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
K QTL+FSAT+P W++ + K+LK D +DLVG + K + + + + + A+
Sbjct: 280 P--KRQTLMFSATMPPWIRKLMQKYLK-DPVIVDLVGEDDQKLAEGISLLSIATENHAKP 336
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRS 407
V+ +I+ ++ GG+ I+FT+TK A +L+ + +ALHGDI Q QRE TL GFR
Sbjct: 337 AVLAQLIQDHAKGGKCIVFTQTKRDADRLSYTMGRTVQCQALHGDITQGQRERTLQGFRE 396
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK 467
G+F TL+AT+VAARGLDI +V L+I E P + E ++HRSGRTGRAG G+A+++Y +
Sbjct: 397 GRFSTLIATDVAARGLDIPNVDLVIHYELPNNSEIFVHRSGRTGRAGKKGIAIVMYGYNQ 456
Query: 468 S-SVSKIERESGVKFEHI 484
S +V IE + G KF+ +
Sbjct: 457 SRAVRGIENDVGGKFQEL 474
>gi|356524181|ref|XP_003530710.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 605
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 178/421 (42%), Positives = 261/421 (61%), Gaps = 16/421 (3%)
Query: 74 PVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLF 133
P+N ++ + + A + EE S+ ++ I+ + + L KGI LF
Sbjct: 53 PLNFRASAVPRAAQFAVERDYSNYEEVSGANSDEGLEIANLGIAPQIVDALAKKGIAKLF 112
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQ + + G D++GRARTG GKTLAF +PIL+S+ + + K G GR P LVL
Sbjct: 113 PIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDSII----QFNAKHGQGRHPLALVL 168
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE 253
PTRELA+QV ++F+ A L CLYGG P Q +L G+D+ +GTPGRI D +
Sbjct: 169 APTRELARQVEKEFNE--AAPNLAMICLYGGMPIQQQMRQLNYGVDIAVGTPGRIIDLLN 226
Query: 254 RGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313
RG ++L ++KF VLDEAD+ML++GF E VE IL + N+ QTL+FSAT+PSW+K+I+
Sbjct: 227 RGALNLKNVKFVVLDEADQMLQVGFQEAVEKILEGLS-PNR-QTLMFSATMPSWIKNITR 284
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETK 373
+L ++ TIDLVG+ K + + + S ++ ++ +I +++GG+ I+FT+TK
Sbjct: 285 NYL-NNPLTIDLVGDSDQKLADGISLYSIVSDSYTKAGILAPLITEHANGGKCIVFTQTK 343
Query: 374 ESASQLADLLPGA---RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQL 430
A +L+ ++ + ALHGDI Q+QRE TLAGFR+ F LVAT+VA+RGLDI +V L
Sbjct: 344 RDADRLSYVMAKSLRCEALHGDISQTQREKTLAGFRNNNFNVLVATDVASRGLDIPNVDL 403
Query: 431 IIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEH---ISA 486
+I + P E ++HRSGRTGRAG G A+++Y +S +V I+R+ G KF I A
Sbjct: 404 VIHYDLPNSSEIFVHRSGRTGRAGKKGSAILVYTQGQSRAVQTIQRDVGCKFTELPKIDA 463
Query: 487 P 487
P
Sbjct: 464 P 464
>gi|449463625|ref|XP_004149532.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Cucumis
sativus]
Length = 593
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 169/378 (44%), Positives = 242/378 (64%), Gaps = 13/378 (3%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
+ + I+ + L KGI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 109 IGKLGIAPEIVSALARKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 168
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
L + + K G GR P LVL PTRELA+QV ++F A L + C+YGGAP Q
Sbjct: 169 LI----QFNAKNGRGRNPLALVLAPTRELARQVEKEFQE--AAPSLDTICVYGGAPISQQ 222
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
+L G+D+ +GTPGR+ D + RG+++LS ++F VLDEAD+ML++GF EDVE IL ++
Sbjct: 223 MRQLDYGVDIAVGTPGRLIDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERL- 281
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
K Q+++FSAT+PSW+ +S +L ++ TIDLVG+ K + + + + ++
Sbjct: 282 -PQKRQSMMFSATMPSWILKLSRNYL-NNPLTIDLVGDSDQKLADGISLFSVVSETYGKA 339
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG---ARALHGDIQQSQREVTLAGFRS 407
+I +I + GG+ IIFT+TK A +LA + ALHGDI QSQRE TL+GFR
Sbjct: 340 SIIGPLITEHGKGGKCIIFTQTKRDADRLAYAMGRNLRCEALHGDISQSQRERTLSGFRD 399
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK 467
G+F LVAT+VAARGLDI +V L+I E P + E ++HRSGRTGRAG G +++Y +
Sbjct: 400 GRFNVLVATDVAARGLDIPNVDLVIHFELPNNTEIFVHRSGRTGRAGKKGSVILIYSQDQ 459
Query: 468 S-SVSKIERESGVKFEHI 484
+ ++ IERE G +F +
Sbjct: 460 TRAIRMIEREVGCRFNEL 477
>gi|3047077|gb|AAC13590.1| contains similarity to the conserved C-terminal domain of helicases
(Pfam: helicase_C.hmm, score: 90.11), similar to
DEAD-box h, partial [Arabidopsis thaliana]
Length = 477
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 171/379 (45%), Positives = 244/379 (64%), Gaps = 11/379 (2%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A+S+ + L E L+ +GI LFPIQ L G D++ RA+TG GKTLAF +PI++
Sbjct: 103 AISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIK 162
Query: 170 SLTN--GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LT G A + GR P LVL PTRELAKQV ++ + A L++ C+YGG Y
Sbjct: 163 RLTEEAGDYTAFRSLRSGRLPKFLVLAPTRELAKQVEKE--IKESAPYLSTVCVYGGVSY 220
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q+ L +G+DVV+GTPGRI D IE ++ L +++ VLDEAD+ML +GF E VE IL
Sbjct: 221 TIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILE 280
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
+ K Q++LFSAT+P+WVK ++ K+L + IDLVG++ K + ++ + +S+
Sbjct: 281 NL--PTKRQSMLFSATMPTWVKKLARKYL-DNPLNIDLVGDQDEKLAEGIKLYAIATTST 337
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAG 404
++ ++ D+I Y+ GG+TI+FT+TK A +++ L + ALHGDI Q QRE TL
Sbjct: 338 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNA 397
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY- 463
FR GKF LVAT+VA+RGLDI +V L+I E P D E ++HRSGRTGRAG G A++++
Sbjct: 398 FRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHT 457
Query: 464 DPRKSSVSKIERESGVKFE 482
+K +V +ER+ G FE
Sbjct: 458 SSQKRTVRSLERDVGCHFE 476
>gi|390472670|ref|XP_002756342.2| PREDICTED: nucleolar RNA helicase 2 [Callithrix jacchus]
Length = 797
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 183/445 (41%), Positives = 258/445 (57%), Gaps = 49/445 (11%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK +G+ LFPIQA TF V +G D
Sbjct: 219 SEMEQEIPVEQKE-------GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYNGKD 271
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L G + K+ GR P VLVL PTRELA QV +DF
Sbjct: 272 LIAQARTGTGKTFSFAIPLIEKLL-GDLQDRKR---GRPPQVLVLAPTRELANQVSKDFS 327
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ G L S +
Sbjct: 328 DI---TKKLSVACFYGGTPYGGQFERMRNG---------------------LISWQCCSW 363
Query: 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVG 327
D +E + G + + + QTLLFSAT P WV +++ K++KS + +DL+G
Sbjct: 364 DGVEENFKCGHT--------RKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIG 415
Query: 328 NEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD---LL 383
+ K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+ +
Sbjct: 416 KKTQKTAITVEHLAIQCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIK 475
Query: 384 PGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAY 443
A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DVE+Y
Sbjct: 476 QDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESY 535
Query: 444 IHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAE 502
IHRSGRTGRAG TGV + Y ++ + ++E+++G+KF+ I P +I KA+ +A
Sbjct: 536 IHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIR 595
Query: 503 TITQVSDSVIPAFKSAAEELLNNSG 527
+ V + I FK +AE+L+ G
Sbjct: 596 LLDSVPPTAISHFKQSAEKLIEEKG 620
>gi|414868924|tpg|DAA47481.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
isoform 1 [Zea mays]
gi|414868925|tpg|DAA47482.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
isoform 2 [Zea mays]
Length = 611
Score = 318 bits (814), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 169/378 (44%), Positives = 250/378 (66%), Gaps = 14/378 (3%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
+++ IS + E+L SKGI LFPIQ + + G D+VGRA+TG GKTLAF +PI+++
Sbjct: 96 IAKLGISSKIVERLASKGITKLFPIQRAVLEPAMQGRDMVGRAKTGTGKTLAFGIPIMDA 155
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ + ++K G+ P +VL PTRELAKQV +F + L + C+YGG P Q
Sbjct: 156 II----RHNEKYKPGKFPLAIVLAPTRELAKQVEREFL---DSSPLETLCVYGGTPIMQQ 208
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
KL G+DVVIGTPGR+ D ++RG++ L+ ++F VLDEAD+ML +GF DVE IL +V
Sbjct: 209 IRKLNYGVDVVIGTPGRVIDLLKRGSLSLAEIRFVVLDEADQMLSVGFDLDVETILERVP 268
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
QTL+FSAT+P+W++ ++ K+L ++ T+DLVG + K + + + + + +
Sbjct: 269 PQR--QTLMFSATMPTWIRKLTQKYL-NNPVTVDLVGEDDQKLAEGISLLAVSSENREKP 325
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFRS 407
V+ ++I+ ++ GG+ I+FT+TK A +L+ + + ALHGDI QSQRE TLAGFR
Sbjct: 326 AVLGELIKEHAKGGKCIVFTQTKRDADRLSHNMSRSFQCEALHGDISQSQRERTLAGFRD 385
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK 467
G+F L+AT+VAARGLDI +V L+I E P E ++HRSGRTGRAG G A+++Y+ +
Sbjct: 386 GRFNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGTAIVMYNYDQ 445
Query: 468 S-SVSKIERESGVKFEHI 484
S +V IER+ G KF +
Sbjct: 446 SRAVRVIERDVGCKFTEL 463
>gi|147828502|emb|CAN77581.1| hypothetical protein VITISV_015347 [Vitis vinifera]
Length = 786
Score = 318 bits (814), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 182/468 (38%), Positives = 274/468 (58%), Gaps = 54/468 (11%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A+++ + L E L+ +GI LFPIQ L+G DL+ RA+TG GKTLAF +PI++
Sbjct: 117 ALAQLGLPPRLVESLEQRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPIIK 176
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
L+ K + + GR P VLVL PTRELAKQV + ++ A L++ C+YGG Y
Sbjct: 177 RLSEDDEKRTSQRRSGRLPRVLVLAPTRELAKQVEK--EIKESAPYLSTVCVYGGVSYIT 234
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q+ L +G+DVV+GTPGRI D I+ ++ L ++ VLDEAD+ML +GF EDVE+IL K+
Sbjct: 235 QQNALSRGVDVVVGTPGRIIDLIKGNSLKLGEVQNLVLDEADQMLAVGFEEDVEVILEKL 294
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFL----------------------KSDKKTIDLVG 327
++ Q++LFSAT+P+WVK ++ K+L K+ +T+D VG
Sbjct: 295 --PSERQSMLFSATMPAWVKKLARKYLDNPLTIDLGNFCPHWGLNLEPPKNPPQTLDHVG 352
Query: 328 NEKMKASTNVRHIVLPCSSSARSQVIPDII---------------RCYSSGGRTIIFTET 372
+ K + ++ +P +++++ ++ D+I + Y+ GG+TI+FT+T
Sbjct: 353 DHDEKLAEGIKLYAIPTTATSKRTILSDLITKNIVKDRGGFQYGHKVYAKGGKTIVFTQT 412
Query: 373 KESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQ 429
K A +++ L + ALHGDI Q QRE TL GFR GKF LVAT+VAARGLDI +V
Sbjct: 413 KRDADEVSMALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 472
Query: 430 L---------IIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DPRKSSVSKIERESGV 479
L II E P D E ++HRSGRTGRAG G A++++ ++ +V +ER+ G
Sbjct: 473 LKYVDLLFLQIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVKSLERDVGC 532
Query: 480 KFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
KFE IS P ++ +++ + T+ V + F A++L+ G
Sbjct: 533 KFEFISPPAIEEVLESSAEQVVATLNGVHPESVEFFTPTAQKLIEEKG 580
>gi|357442015|ref|XP_003591285.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355480333|gb|AES61536.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 615
Score = 317 bits (813), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 176/399 (44%), Positives = 254/399 (63%), Gaps = 12/399 (3%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
+S+ L + L+ +GI SLFPIQ L+G D++ RA+TG GKTLAF +PI++
Sbjct: 89 ISKLGFPSQLVDSLQRRGITSLFPIQRAVLLPALEGRDIIARAKTGTGKTLAFGIPIIKG 148
Query: 171 LT-NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
LT N + +++G R P VLVL PTRELAKQV ++ + A L + C+YGG Y
Sbjct: 149 LTENEQSNMMRRSG--RLPKVLVLAPTRELAKQVEKE--IKESAPYLNTVCVYGGVSYDI 204
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q L +G+DVV+GTPGR+ D I G + L+ +++ VLDEAD+ML +GF E VE IL +
Sbjct: 205 QRNALSRGVDVVVGTPGRLIDLINGGTLKLAEIQYLVLDEADQMLAVGFEESVEEILESI 264
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
++ Q +LFSAT+P WVK +S K L ++ TIDLVG+ + K + ++ + +S+++
Sbjct: 265 --PSQRQIMLFSATMPGWVKKLSRKHL-NNPLTIDLVGDREEKLAEGIKLYAVSATSTSK 321
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFR 406
+++ +I Y++GG+TI+FT TK A +++ L ++ LHGDI Q QRE TL GFR
Sbjct: 322 RRILYGLISAYANGGKTIVFTRTKRDADEISLSLTNSIASKPLHGDISQYQREKTLNGFR 381
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP- 465
G+F LVAT+VA+RGLDI +V LII E P E ++HRSGRTGRAG G AV++Y
Sbjct: 382 QGRFTVLVATDVASRGLDIPNVDLIIHYELPDGPETFVHRSGRTGRAGKEGTAVVMYTTS 441
Query: 466 RKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETI 504
+K +V ERE G FE IS P D+ +++ + T
Sbjct: 442 QKRTVISFEREVGCTFEFISPPPMQDLPESSTRQVVPTF 480
>gi|449505807|ref|XP_004162573.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Cucumis
sativus]
Length = 611
Score = 317 bits (813), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 169/378 (44%), Positives = 242/378 (64%), Gaps = 13/378 (3%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
+ + I+ + L KGI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 109 IGKLGIAPEIVSALARKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 168
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
L + + K G GR P LVL PTRELA+QV ++F A L + C+YGGAP Q
Sbjct: 169 LI----QFNAKNGRGRNPLALVLAPTRELARQVEKEFQE--AAPSLDTICVYGGAPISQQ 222
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
+L G+D+ +GTPGR+ D + RG+++LS ++F VLDEAD+ML++GF EDVE IL ++
Sbjct: 223 MRQLDYGVDIAVGTPGRLIDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERL- 281
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
K Q+++FSAT+PSW+ +S +L ++ TIDLVG+ K + + + + ++
Sbjct: 282 -PQKRQSMMFSATMPSWILKLSRNYL-NNPLTIDLVGDSDQKLADGISLFSVVSETYGKA 339
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG---ARALHGDIQQSQREVTLAGFRS 407
+I +I + GG+ IIFT+TK A +LA + ALHGDI QSQRE TL+GFR
Sbjct: 340 SIIGPLITEHGKGGKCIIFTQTKRDADRLAYAMGRNLRCEALHGDISQSQRERTLSGFRD 399
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK 467
G+F LVAT+VAARGLDI +V L+I E P + E ++HRSGRTGRAG G +++Y +
Sbjct: 400 GRFNVLVATDVAARGLDIPNVDLVIHFELPNNTEIFVHRSGRTGRAGKKGSVILIYSQDQ 459
Query: 468 S-SVSKIERESGVKFEHI 484
+ ++ IERE G +F +
Sbjct: 460 TRAIRMIEREVGCRFNEL 477
>gi|356569971|ref|XP_003553167.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 643
Score = 317 bits (813), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 174/415 (41%), Positives = 258/415 (62%), Gaps = 13/415 (3%)
Query: 74 PVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLF 133
P+N ++ + + A + EE S+ +++ I+ + + L KGI LF
Sbjct: 52 PLNFRASLVPRAAQFAIERDYSNYEEVSNANSDEGLEIAKLGIAPEIVDALARKGIAKLF 111
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQ + + G D++GRARTG GKTLAF +PIL+ +T + + K G GR P LVL
Sbjct: 112 PIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDRIT----QFNAKHGQGRNPLALVL 167
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE 253
PTRELA+QV ++F+ A L + CLYGG P Q +L G+D+ +GTPGRI D +
Sbjct: 168 APTRELARQVEKEFNE--AAPNLATICLYGGMPIQQQMRQLNYGVDIAVGTPGRIIDLLN 225
Query: 254 RGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313
RG ++L +KF VLDEAD+ML++GF E VE IL + N+ QTL+FSAT+PSW+K+I+
Sbjct: 226 RGALNLKDVKFVVLDEADQMLQVGFQEAVEKILEGLS-PNR-QTLMFSATMPSWIKNITR 283
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETK 373
+L ++ TIDLVG+ K + + + S ++ ++ +I +++GG+ I+FT+TK
Sbjct: 284 NYL-NNPLTIDLVGDSDQKLADGISLYSIVSDSYTKAGILAPLITEHANGGKCIVFTQTK 342
Query: 374 ESASQLADLLPGA---RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQL 430
A +L+ ++ + ALHGDI Q+QRE TLAGFR+ F LVAT+VA+RGLDI +V L
Sbjct: 343 RDADRLSYVMAKSLRCEALHGDISQTQRERTLAGFRNNNFNVLVATDVASRGLDIPNVDL 402
Query: 431 IIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK-SSVSKIERESGVKFEHI 484
+I + P E ++HRSGRTGRAG G A++ + + +V IER+ G KF +
Sbjct: 403 VIHYDLPNSSEIFVHRSGRTGRAGKKGSAILFFTQDQFRAVQTIERDVGCKFTEL 457
>gi|357494025|ref|XP_003617301.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355518636|gb|AET00260.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 802
Score = 317 bits (813), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 169/391 (43%), Positives = 250/391 (63%), Gaps = 13/391 (3%)
Query: 98 EEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQ 157
EE + S+ +++ IS + L+ KGI LFPIQ + + G D++GRARTG
Sbjct: 69 EEPSKSNSDEGLEIAKLGISQDIVSALEKKGITKLFPIQRAVLEPAMQGRDMIGRARTGT 128
Query: 158 GKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLT 217
GKTLAF +PI++ + + + K G G+ P LVL PTRELAKQV ++F Y A L
Sbjct: 129 GKTLAFGIPIMDKII----QFNAKHGRGKDPLALVLAPTRELAKQVEKEF--YEAAPNLD 182
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
+ C+YGG P Q +L G+D+ +GTPGRI D + RG ++L ++F +LDEAD+ML++G
Sbjct: 183 TICVYGGTPISQQMRQLDYGVDIAVGTPGRIIDLLNRGALNLKEVQFVILDEADQMLQVG 242
Query: 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337
F EDVE IL ++ QTL+FSAT+P+W+K ++ +LK + TIDLVG+ K + +
Sbjct: 243 FQEDVEKILERLPAER--QTLMFSATMPTWIKQLTRNYLK-NPLTIDLVGDSDQKLADGI 299
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQ 394
+ + ++ +I +I+ ++ GG+ I+FT+TK A +++ + + ALHGDI
Sbjct: 300 SLYSILSDAYVKAGIIVPLIKEHAKGGKCIVFTQTKRDADRISHGMSKSIPCEALHGDIS 359
Query: 395 QSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
Q QRE TLAGFR+G F LVAT+VA+RGLDI +V L+I E P + E ++HRSGRTGRAG
Sbjct: 360 QIQRERTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHYELPNNSEIFVHRSGRTGRAG 419
Query: 455 NTGVAVMLYDPRKS-SVSKIERESGVKFEHI 484
G A+++Y +S ++ IER+ G KF +
Sbjct: 420 KKGTAILVYTQDQSRTLRTIERDVGCKFSEL 450
>gi|68063293|ref|XP_673656.1| ATP-dependent helicase [Plasmodium berghei strain ANKA]
gi|56491666|emb|CAH95329.1| ATP-dependent helicase, putative [Plasmodium berghei]
Length = 525
Score = 317 bits (813), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 189/485 (38%), Positives = 276/485 (56%), Gaps = 47/485 (9%)
Query: 115 RISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNG 174
+I+ + + L++KGI+ + IQ+ +F + +G+D++GR+ TG GKTLAF LP++E L
Sbjct: 6 QINQKIVDFLETKGIKYMTKIQSKSFMPIYEGNDIIGRSETGSGKTLAFALPLVEKLYKN 65
Query: 175 P-----------------------TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211
K + P +LVL PTREL+KQV F
Sbjct: 66 MESKKKIIKNKSNEINSIQHLSEGHKNENTDSMDKYPYILVLEPTRELSKQVETTFKEIS 125
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
+YGG Y QE KL+KGI ++ GTPGRI DHIE+ N+ L ++K+ VLDEAD
Sbjct: 126 QFYNFNIMSIYGGESYTYQENKLRKGIQILTGTPGRIIDHIEKKNLSLKNIKYVVLDEAD 185
Query: 272 EMLRMGFVEDVELILG--KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNE 329
EML +GF D+E IL ++DA Q LL+SAT PSW+K IS+K+LK + ID++ N
Sbjct: 186 EMLNLGFTHDIERILSYINIKDA---QVLLYSATTPSWIKDISSKYLK-NPIYIDVI-NT 240
Query: 330 KMKASTNVRHIVL--PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA-----DL 382
K S ++HI + P ++ ++ DII S+GG+ IIFT TK A L +
Sbjct: 241 INKTSKTIQHIAIKTPYDIKEKAMLLEDIILVKSNGGQVIIFTRTKLEADILCSEGSFNY 300
Query: 383 LPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEA 442
L + LHG+I QS RE T+ FRSG F L+AT++AARGLDI++V L+IQC PP
Sbjct: 301 LTFS-VLHGNIAQSTREHTMQRFRSGMFQVLIATDIAARGLDISNVDLVIQCYPPTYPAI 359
Query: 443 YIHRSGRTGRAGNTGVAVMLY-DPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAA 501
YIHRSGRTGRA G++++L+ + K+ V KIE+ G+KF S P + +
Sbjct: 360 YIHRSGRTGRANKKGMSIVLFSNEDKNDVIKIEKNCGIKFTTESLPNNEQVFHSVSKITL 419
Query: 502 ETITQVSDSVIPAFKSAAEELLNNSGL---SAAELLAKALA-----KAVVSAFLFSSSSN 553
+ I V+ V+P F +A EL+ S L + +L+++ LA + + L S S+
Sbjct: 420 KKIENVNTEVLPFFHKSANELIEKSNLLNINQIDLISRCLAIISKKEYIKKRSLISGLSD 479
Query: 554 SLSLT 558
+++LT
Sbjct: 480 TITLT 484
>gi|326534262|dbj|BAJ89481.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 171/404 (42%), Positives = 256/404 (63%), Gaps = 21/404 (5%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
V+R IS + E+L ++GI LFPIQ + + G D++GRARTG GKTLAF +PI++
Sbjct: 89 VARLGISPRIVERLAARGITRLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDR 148
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ + ++K G GR P ++L PTRELA+QV ++F + L + C+YGG P Q
Sbjct: 149 IL----RHNEKNGSGRNPLAIILAPTRELARQVEKEFRE---SAPLDTLCVYGGVPISQQ 201
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
L G+DVV+GTPGR+ D + RG ++LS ++F VLDEAD+ML +GF E VE+I+ K+
Sbjct: 202 MRTLNYGVDVVVGTPGRVIDLLRRGVLNLSEIQFMVLDEADQMLAVGFDEAVEVIMEKL- 260
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
Q++LFSAT+PSW++ ++ ++LK D IDLVG+ + K + + + +S
Sbjct: 261 -PQNRQSMLFSATMPSWIRKLTNQYLK-DPVIIDLVGDSEQKLPEGISLYSIVSENYGKS 318
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRS 407
++ +I+ ++ GG+ I+FT+TK A +LA + +ALHGDI Q+QRE TL+GFR
Sbjct: 319 SILGPLIKEHADGGKCIVFTQTKREADRLAYAMGRSYACQALHGDISQNQRERTLSGFRD 378
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK 467
G+F LVAT+VAARGLDI +V L++ E P E ++HRSGRT RAG G+A+++Y +
Sbjct: 379 GRFNILVATDVAARGLDIPNVDLVVHYEIPNSSELFVHRSGRTARAGKKGIAILMYTYEQ 438
Query: 468 S-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDS 510
S +V IE++ G +F + AA EAAE + D+
Sbjct: 439 SRTVKGIEQDIGCRFTELP-------KVAATDEAAELFNVMRDT 475
>gi|356499321|ref|XP_003518490.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 595
Score = 317 bits (811), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 174/415 (41%), Positives = 256/415 (61%), Gaps = 16/415 (3%)
Query: 74 PVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLF 133
P+N ++ + + P EE +G ++ +++ IS + L KGI LF
Sbjct: 56 PLNFRASSCHRAEYAVDDFP---YEEGSKGNADEGLEIAKLGISQDIVSALAKKGITKLF 112
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQ + + G D++GRARTG GKTLAF +PI++ + + + K G GR P LVL
Sbjct: 113 PIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKVI----QFNAKHGRGRDPLALVL 168
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE 253
PTRELA+QV +F A L + C+YGG P Q +L G+D+ +GTPGRI D +
Sbjct: 169 APTRELARQVESEF--CESAPNLDTICVYGGTPISQQMRQLDYGVDIAVGTPGRIIDLLN 226
Query: 254 RGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313
RG ++L ++F VLDEAD+ML++GF EDVE IL ++ K QTL+FSAT+PSW+K IS
Sbjct: 227 RGALNLKDVQFVVLDEADQMLQVGFQEDVEKILERLPP--KRQTLMFSATMPSWIKQISR 284
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETK 373
+L ++ TIDLVG+ K + + + ++ ++ +I ++ GG+ I+FT+TK
Sbjct: 285 NYL-NNPLTIDLVGDSDQKLADGISLYSIATDLYVKAGILAPLITEHAKGGKCIVFTQTK 343
Query: 374 ESASQLADLLPGA---RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQL 430
A +L+ + + ALHGDI Q+QRE TLAGFR+G F LVAT+VA+RGLDI +V L
Sbjct: 344 RDADRLSYAMARSVKCEALHGDISQAQREKTLAGFRNGHFNVLVATDVASRGLDIPNVDL 403
Query: 431 IIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHI 484
+I + P + E ++HRSGRTGRAG G A+++Y +S +V IER+ G +F +
Sbjct: 404 VIHYDLPNNSEIFVHRSGRTGRAGKKGTAILVYTEDQSRAVKLIERDVGSRFSEL 458
>gi|242086224|ref|XP_002443537.1| hypothetical protein SORBIDRAFT_08g021180 [Sorghum bicolor]
gi|241944230|gb|EES17375.1| hypothetical protein SORBIDRAFT_08g021180 [Sorghum bicolor]
Length = 618
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 168/378 (44%), Positives = 247/378 (65%), Gaps = 14/378 (3%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
+++ IS + E+L KGI LFPIQ + + G D+VGRA+TG GKTLAF +PIL++
Sbjct: 100 IAKLGISNKIVERLAKKGITKLFPIQRAVLEPAMQGRDMVGRAKTGTGKTLAFGIPILDA 159
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ + ++K G+ P +VL PTRELAKQV +F + L + C+YGG P Q
Sbjct: 160 II----RHNEKYKPGKFPLAIVLAPTRELAKQVEREFL---DSSPLETLCVYGGTPIMQQ 212
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
+L G+DVVIGTPGR+ D ++RG + L+ ++F VLDEAD+ML +GF +DVE IL +V
Sbjct: 213 IRQLNYGVDVVIGTPGRVIDLLKRGALSLAEIRFVVLDEADQMLSVGFDQDVETILERVP 272
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
QTL+FSAT+P+W++ ++ K+L S T+DLVG + K + + + + + +
Sbjct: 273 PQR--QTLMFSATMPTWIRKLTQKYLNS-PVTVDLVGEDDQKLAEGISLLSVSSENRQKP 329
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFRS 407
V+ ++I+ ++ GG+ I+FT+TK A +L+ + + ALHGDI QSQRE TL GFR
Sbjct: 330 AVLGELIKEHAKGGKCIVFTQTKRDADRLSHSMSRSFQCEALHGDISQSQRERTLGGFRD 389
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK 467
G+F L+AT+VAARGLDI +V L+I E P E ++HRSGRTGRAG G A+++Y+ +
Sbjct: 390 GRFNILIATDVAARGLDIPNVDLVIHYELPNSSEIFVHRSGRTGRAGKKGTAIVMYNYEQ 449
Query: 468 S-SVSKIERESGVKFEHI 484
S +V IER+ G KF +
Sbjct: 450 SRAVRVIERDVGCKFTEL 467
>gi|412988910|emb|CCO15501.1| predicted protein [Bathycoccus prasinos]
Length = 935
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 179/435 (41%), Positives = 258/435 (59%), Gaps = 24/435 (5%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P +++ F + LK KGIE+LFPIQ + G D+V RA+TG GKTLAF LPI
Sbjct: 219 PTSINNFNLHPITIAALKKKGIETLFPIQVAALEPAQSGRDVVARAKTGTGKTLAFSLPI 278
Query: 168 LESLTNGPTKASKK---TGYG--------RAPSVLVLLPTRELAKQVHEDFDVYGGAVGL 216
+E + + + G G + P +VL PTRELA+QV + +Y A
Sbjct: 279 VEKFLREDEEENNRGDEDGEGTRRRGSRDKRPRCIVLAPTRELAQQVERE--IYSLAPSF 336
Query: 217 TSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM 276
+ +YGGAP QE KL++G+D V+GTPGR+ D + RG +DLS ++ VLDEAD+ML +
Sbjct: 337 ETLTVYGGAPIGPQESKLRRGVDFVVGTPGRVMDLLNRGTLDLSRVQHVVLDEADQMLAV 396
Query: 277 GFVEDVELILGKVEDANK-VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335
GF EDVE IL ED K QT LFSAT+P WVK + KFL D+ IDLVG + K +
Sbjct: 397 GFEEDVETIL---EDVPKNRQTFLFSATMPHWVKKLQQKFL-VDQVNIDLVGEDTGKINK 452
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARA----LHG 391
++ + + ++ V+ D++ ++ G +TI+FT+TK A ++ L G R LHG
Sbjct: 453 DIDLMSCSVAFPSKCAVLMDLVTVHAKGNKTIVFTQTKRDADEVTASL-GKRVSTEVLHG 511
Query: 392 DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451
DI Q+QRE TL FR KF LVAT+VAARGLD+++V L++ E P + E+++HR GRTG
Sbjct: 512 DIAQAQRERTLQRFRQDKFSVLVATDVAARGLDVDNVDLVVHYELPNETESFVHRCGRTG 571
Query: 452 RAGNTGVAVMLYDPRK-SSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDS 510
RAG G A+ L+ R+ + I+R +G I+ P +++ A+ A I V +
Sbjct: 572 RAGKKGTAIALHTDREFYRLRDIKRFTGADIREINPPSSSEVMAASAATAEHRIHAVDED 631
Query: 511 VIPAFKSAAEELLNN 525
V+ F AA++++ N
Sbjct: 632 VLEFFLPAAKDMIRN 646
>gi|122227760|sp|Q0ILZ4.1|RH9_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 9
Length = 628
Score = 315 bits (807), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 167/375 (44%), Positives = 247/375 (65%), Gaps = 14/375 (3%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
V++ IS + +L S+GI LFPIQ + + G D+VGRA+TG GKTLAF +PIL++
Sbjct: 100 VAKLGISPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDA 159
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ + ++K G+ P +VL PTRELAKQV +F + + + C+YGG P Q
Sbjct: 160 II----RHNEKNSPGKFPLAIVLAPTRELAKQVEREFS---DSSNVETICVYGGTPISQQ 212
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
+L G+DVVIGTPGR+ D ++RG ++LS ++F VLDEAD+ML +GF EDVE IL +V
Sbjct: 213 IRQLNYGVDVVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVP 272
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
K QTL+FSAT+P+W++ ++ K+LK + TIDLVG + K + + + A+
Sbjct: 273 P--KRQTLMFSATMPTWIQRLTQKYLK-NPVTIDLVGEDDQKLAEGISLYSIASEGHAKP 329
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFRS 407
V+ ++I+ ++ GG+ I+FT+TK A +L+ + + +ALHGDI Q+QRE TL GFR
Sbjct: 330 AVLGELIKEHAKGGKCIVFTQTKRDADRLSYTMGRSFQCQALHGDITQAQRERTLKGFRE 389
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK 467
G F L+AT+VAARGLDI +V L+I E P E ++HRSGRTGRAG G A++++ ++
Sbjct: 390 GHFNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQ 449
Query: 468 S-SVSKIERESGVKF 481
S ++ +E + G KF
Sbjct: 450 SRAIRMVENDVGCKF 464
>gi|125537372|gb|EAY83860.1| hypothetical protein OsI_39082 [Oryza sativa Indica Group]
Length = 630
Score = 315 bits (806), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 167/375 (44%), Positives = 247/375 (65%), Gaps = 14/375 (3%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
V++ IS + +L S+GI LFPIQ + + G D+VGRA+TG GKTLAF +PIL++
Sbjct: 100 VAKLGISPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDA 159
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ + ++K G+ P +VL PTRELAKQV +F + + + C+YGG P Q
Sbjct: 160 II----RHNEKNSPGKFPLAIVLAPTRELAKQVEREFS---DSSNVETICVYGGTPISQQ 212
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
+L G+DVVIGTPGR+ D ++RG ++LS ++F VLDEAD+ML +GF EDVE IL +V
Sbjct: 213 IRQLNYGVDVVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVP 272
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
K QTL+FSAT+P+W++ ++ K+LK + TIDLVG + K + + + A+
Sbjct: 273 P--KRQTLMFSATMPTWIRRLTQKYLK-NPVTIDLVGEDDQKLAEGISLYSIASEGHAKP 329
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFRS 407
V+ ++I+ ++ GG+ I+FT+TK A +L+ + + +ALHGDI Q+QRE TL GFR
Sbjct: 330 AVLGELIKEHAKGGKCIVFTQTKRDADRLSYTMGRSFQCQALHGDITQAQRERTLKGFRE 389
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK 467
G F L+AT+VAARGLDI +V L+I E P E ++HRSGRTGRAG G A++++ ++
Sbjct: 390 GHFNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQ 449
Query: 468 S-SVSKIERESGVKF 481
S ++ +E + G KF
Sbjct: 450 SRAIRMVENDVGCKF 464
>gi|242047398|ref|XP_002461445.1| hypothetical protein SORBIDRAFT_02g002790 [Sorghum bicolor]
gi|241924822|gb|EER97966.1| hypothetical protein SORBIDRAFT_02g002790 [Sorghum bicolor]
Length = 602
Score = 315 bits (806), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 166/379 (43%), Positives = 249/379 (65%), Gaps = 16/379 (4%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
++R IS + EKL ++GI LFPIQ + + G D++GRARTG GKTLAF +PI++
Sbjct: 88 IARLWISPRIVEKLAARGITKLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDK 147
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ + ++K G GR P +VL PTRELA+QV ++F + L + C+YGG P + Q
Sbjct: 148 ILS----HNEKNGNGRNPLAIVLAPTRELARQVEKEFRE---SAPLDTLCVYGGVPINQQ 200
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
L G+D+V+GTPGRI D + RG ++LS ++F VLDEAD+ML +GF EDVE+I+ ++
Sbjct: 201 MRVLNYGVDIVVGTPGRIIDLLRRGVLNLSQIQFVVLDEADQMLAVGFDEDVEVIMEQL- 259
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
Q++LFSAT+PSW++ IS K+L +D IDLVG+ K + + + +
Sbjct: 260 -PQNRQSMLFSATMPSWIRKISNKYL-NDPVIIDLVGDSDQKLPEGISLYSIASDNFGKQ 317
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLL----PGARALHGDIQQSQREVTLAGFR 406
++ +I+ +++GG+ I+FT+TK A +LA ++ P +ALHGDI Q+QRE TL+GFR
Sbjct: 318 SILGPLIKEHANGGKCIVFTQTKRDADRLAYVMGRSYP-CQALHGDISQNQRERTLSGFR 376
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
G+F LVAT+VAARGLDI +V L++ E P E ++HRSGRT RAG G A+++Y
Sbjct: 377 DGRFNILVATDVAARGLDIPNVDLVVHYEIPNTSELFVHRSGRTARAGKKGSAILIYTYE 436
Query: 467 KS-SVSKIERESGVKFEHI 484
++ +V IE++ G +F +
Sbjct: 437 QTRAVRVIEQDIGCRFTEL 455
>gi|222617461|gb|EEE53593.1| hypothetical protein OsJ_36838 [Oryza sativa Japonica Group]
Length = 676
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 167/375 (44%), Positives = 247/375 (65%), Gaps = 14/375 (3%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
V++ IS + +L S+GI LFPIQ + + G D+VGRA+TG GKTLAF +PIL++
Sbjct: 148 VAKLGISPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDA 207
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ + ++K G+ P +VL PTRELAKQV +F + + + C+YGG P Q
Sbjct: 208 II----RHNEKNSPGKFPLAIVLAPTRELAKQVEREFS---DSSNVETICVYGGTPISQQ 260
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
+L G+DVVIGTPGR+ D ++RG ++LS ++F VLDEAD+ML +GF EDVE IL +V
Sbjct: 261 IRQLNYGVDVVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVP 320
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
K QTL+FSAT+P+W++ ++ K+LK + TIDLVG + K + + + A+
Sbjct: 321 P--KRQTLMFSATMPTWIQRLTQKYLK-NPVTIDLVGEDDQKLAEGISLYSIASEGHAKP 377
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFRS 407
V+ ++I+ ++ GG+ I+FT+TK A +L+ + + +ALHGDI Q+QRE TL GFR
Sbjct: 378 AVLGELIKEHAKGGKCIVFTQTKRDADRLSYTMGRSFQCQALHGDITQAQRERTLKGFRE 437
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK 467
G F L+AT+VAARGLDI +V L+I E P E ++HRSGRTGRAG G A++++ ++
Sbjct: 438 GHFNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQ 497
Query: 468 S-SVSKIERESGVKF 481
S ++ +E + G KF
Sbjct: 498 SRAIRMVENDVGCKF 512
>gi|302846090|ref|XP_002954582.1| hypothetical protein VOLCADRAFT_82854 [Volvox carteri f.
nagariensis]
gi|300260001|gb|EFJ44223.1| hypothetical protein VOLCADRAFT_82854 [Volvox carteri f.
nagariensis]
Length = 424
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 175/386 (45%), Positives = 247/386 (63%), Gaps = 18/386 (4%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT--NGPTKAS 179
+ L ++GI SLFP+QA F+ +++G D+V RA+TG GKTLAF LP++E+L NG ++
Sbjct: 2 DALAARGIYSLFPVQAQVFEPIMNGRDVVCRAKTGSGKTLAFALPVVENLLEENGKSRPR 61
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
K GRAP LVL PTRELA QV +F+ + + S YGG Q L+ G+D
Sbjct: 62 K----GRAPRCLVLAPTRELANQVSREFESVCPNLKVDS--FYGGVSISPQIRSLENGVD 115
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+GTPGRI D +ERG + L ++++ VLDEAD+ML MGF +D+E ILG + + + QTLL
Sbjct: 116 VVVGTPGRIIDLLERGCLKLDNIRYAVLDEADQMLDMGFEQDMERILGAIPEGKERQTLL 175
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKM-KASTNVRHIVLPCSSSARSQVIPDIIR 358
FSATLP WVK ++ ++ +++ TIDLVG E K + +R +V + + + ++
Sbjct: 176 FSATLPKWVKSVAKRY-QNNPLTIDLVGEENTGKLADTIRLLVQQVDGAQKMSALQGLLA 234
Query: 359 CY---SSGGRTIIFTETKESASQL---ADLLPGARALHGDIQQSQREVTLAGFRSGKFMT 412
Y + GG+ IIF TK A ++ + ALHGDI Q+QRE LA FR GK+
Sbjct: 235 MYGNTAGGGKAIIFVNTKAKADEVNMAVNEFASCDALHGDISQAQREKALALFRDGKYNC 294
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVS 471
LVAT+VAARGLDI V L+ + P+D EA++HRSGRTGRAG TG AV+L+ R++ S++
Sbjct: 295 LVATDVAARGLDIPSVDLVAHFDLPQDNEAFLHRSGRTGRAGKTGTAVVLFTEREARSLA 354
Query: 472 KIERESGV-KFEHISAPQPADIAKAA 496
I R + V E + AP P D+ + A
Sbjct: 355 LILRATKVTNAELVGAPDPGDVMRTA 380
>gi|357156628|ref|XP_003577522.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Brachypodium
distachyon]
Length = 613
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 169/378 (44%), Positives = 250/378 (66%), Gaps = 14/378 (3%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
V++ IS + +L ++GI LFPIQ + + G D++GRA+TG GKTLAF +PIL++
Sbjct: 101 VAKLGISDEIVTRLAARGITRLFPIQRAVLEPAMQGQDMIGRAKTGTGKTLAFGIPILDA 160
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ K +KK GR P + L PTRELAKQV ++F + L + C+YGG P Q
Sbjct: 161 II----KHNKKHQPGRFPLAICLAPTRELAKQVDKEFV---DSSPLKTLCVYGGTPIQHQ 213
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
+L+ G+D+V+GTPGR+ D ++RG ++LS ++F VLDEAD+ML +GF E VE IL V
Sbjct: 214 IRELQYGVDIVVGTPGRVIDLLKRGALNLSMVQFVVLDEADQMLSVGFDEAVEEILQSV- 272
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
K QTL+FSAT+P+W++ ++ K+LK + T+DLVG + K + + + + + A+
Sbjct: 273 -PVKRQTLMFSATMPTWIRKLTQKYLK-NPATVDLVGEDDQKLAEGISLLSIATENHAKP 330
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFRS 407
V+ +I+ + GG+ I+FT+TK A +LA + + + LHGDI Q QRE TLAGFR
Sbjct: 331 AVLAQLIQDHGKGGKCIVFTQTKRDADRLAFTMGRSIQCQPLHGDISQVQRERTLAGFRD 390
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK 467
G+F TL+AT+VAARGLDI +V L+I E P E ++HRSGRTGRAG G A++++ ++
Sbjct: 391 GRFSTLIATDVAARGLDIPNVDLVIHYELPNSSEIFVHRSGRTGRAGKKGTAIVMHSYQQ 450
Query: 468 S-SVSKIERESGVKFEHI 484
S SV IE++ G KF+ +
Sbjct: 451 SRSVRGIEQDVGGKFKEL 468
>gi|356554094|ref|XP_003545384.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 610
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 175/416 (42%), Positives = 255/416 (61%), Gaps = 17/416 (4%)
Query: 74 PVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNA-VSRFRISVPLREKLKSKGIESL 132
P+N +S + + P EE +G + +++ IS + L KGI L
Sbjct: 50 PLNFRSSSCHRAEYAVDDFP---YEEGSKGNAADEGLEIAKLGISEDIVSALAKKGITKL 106
Query: 133 FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLV 192
FPIQ + + G D++GRARTG GKTLAF +PI++ + + + K G GR P LV
Sbjct: 107 FPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKII----QFNAKHGRGRDPLALV 162
Query: 193 LLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI 252
L PTRELA+QV +F A L + C+YGG P Q +L G+D+ +GTPGRI D +
Sbjct: 163 LAPTRELARQVETEF--CESAPNLDTICVYGGTPISRQMRELDYGVDIAVGTPGRIIDLL 220
Query: 253 ERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 312
RG ++L ++F VLDEAD+ML++GF EDVE IL ++ K QTL+FSAT+PSW+K IS
Sbjct: 221 NRGALNLKDVQFVVLDEADQMLQVGFQEDVEKILERLPP--KRQTLMFSATMPSWIKQIS 278
Query: 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTET 372
+L ++ TIDLVG+ K + + + ++ ++ +I ++ GG+ I+FT+T
Sbjct: 279 RNYL-NNPLTIDLVGDSDQKLADGISLYSIATDLYVKAGILAPLITEHAKGGKCIVFTQT 337
Query: 373 KESASQLADLLPGA---RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQ 429
K A +L+ + + ALHGDI Q+QRE TLAGFR+G F LVAT+VA+RGLDI +V
Sbjct: 338 KRDADRLSYTMARSVKCEALHGDISQAQREKTLAGFRNGHFNVLVATDVASRGLDIPNVD 397
Query: 430 LIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHI 484
L+I + P + E ++HRSGRTGRAG G A+++Y +S +V IER+ G +F +
Sbjct: 398 LVIHYDLPNNSEIFVHRSGRTGRAGKKGTAILVYTEDQSRAVKLIERDVGSRFTEL 453
>gi|334187954|ref|NP_001190402.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
gi|332006183|gb|AED93566.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
Length = 655
Score = 311 bits (797), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 170/390 (43%), Positives = 249/390 (63%), Gaps = 13/390 (3%)
Query: 144 LDGSDLVGRARTGQGKTLAFVLPILESLTN--GPTKASKKTGYGRAPSVLVLLPTRELAK 201
L G D++ RA+TG GKTLAF +PI++ LT G A +++G R P LVL PTRELAK
Sbjct: 44 LQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSG--RLPKFLVLAPTRELAK 101
Query: 202 QVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSS 261
QV ++ + A L++ C+YGG Y Q+ L +G+DVV+GTPGRI D IE ++ L
Sbjct: 102 QVEKE--IKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGE 159
Query: 262 LKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
+++ VLDEAD+ML +GF E VE IL + K Q++LFSAT+P+WVK ++ K+L +
Sbjct: 160 VEYLVLDEADQMLAVGFEEAVESILENL--PTKRQSMLFSATMPTWVKKLARKYL-DNPL 216
Query: 322 TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLAD 381
IDLVG++ K + ++ + +S+++ ++ D+I Y+ GG+TI+FT+TK A +++
Sbjct: 217 NIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSL 276
Query: 382 LLPGA---RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR 438
L + ALHGDI Q QRE TL FR GKF LVAT+VA+RGLDI +V L+I E P
Sbjct: 277 ALSNSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPN 336
Query: 439 DVEAYIHRSGRTGRAGNTGVAVMLY-DPRKSSVSKIERESGVKFEHISAPQPADIAKAAG 497
D E ++HRSGRTGRAG G A++++ +K +V +ER+ G FE IS P D+ +++
Sbjct: 337 DPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLESSA 396
Query: 498 VEAAETITQVSDSVIPAFKSAAEELLNNSG 527
+ T+ V I F + A++L G
Sbjct: 397 DQVVATLNGVHPDSIKFFSATAQKLYEEKG 426
>gi|325188903|emb|CCA23433.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 684
Score = 311 bits (797), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 173/454 (38%), Positives = 259/454 (57%), Gaps = 19/454 (4%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
++ F +S L LK GI LFP+Q +F ++ G DLVGR++TG GKTLAF LPI+E
Sbjct: 83 ITEFGLSDTLFSNLKKAGITDLFPVQVQSFSTMMKGVDLVGRSKTGSGKTLAFGLPIIEK 142
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
L + ++G R P L+LLPTRELA QV + + L + + GG PYH+Q
Sbjct: 143 LLS-------RSGSRRNPGALILLPTRELATQVSSELSRL--SPQLKTVTIVGGVPYHSQ 193
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
E +++ G+D+V+GTPGRI D E+ + ++F VLDEAD ML+ GF E VE IL V
Sbjct: 194 ESRIRAGVDIVVGTPGRIMDLFEKKTLSFEDVQFTVLDEADMMLKFGFQEAVETILSWVP 253
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
+ Q +++SAT P WV ++ K+LK D TIDLVG+E+ T V H + S+ R
Sbjct: 254 ETR--QCVMWSATFPKWVTSLTKKYLK-DAVTIDLVGSEEAHVPTTVSHKAINVPSNYRV 310
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG--ARALHGDIQQSQREVTLAGFRSG 408
+ I+ Y+S G++++FTETK A+++A+ L G +ALHGD+ Q R T+ FR G
Sbjct: 311 VALQRILEKYASQGQSLVFTETKHEANEIANGLEGCNVQALHGDLSQGVRASTMQNFRKG 370
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK- 467
TL T++AARGLDI +V L++ P D E ++HR+GRTGRAG TG +++ ++ ++
Sbjct: 371 LVKTLACTDIAARGLDIANVDLVVHYRLPNDRENFVHRAGRTGRAGKTGTSIVFFENQEY 430
Query: 468 SSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
+ +E ++F H + P D E + + +VSD A +L G
Sbjct: 431 RDIKDLENRFKIQFAHAATPDADDFRDTKVKEVTKRLQKVSDKSSDFLSEEATKLYEAHG 490
Query: 528 L----SAAELLAKALAKAVVSAFLFSSSSNSLSL 557
+ +A LL +S + + SN L++
Sbjct: 491 IRIFSAALNLLCGFEKGNTLSVSMLTGKSNMLTV 524
>gi|403274101|ref|XP_003928827.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Saimiri boliviensis
boliviensis]
Length = 722
Score = 311 bits (796), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 197/572 (34%), Positives = 294/572 (51%), Gaps = 77/572 (13%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSET--SSELGEPV 75
M K+ D E EA L E S KK+ +K + K R + +E+ E E + +L P
Sbjct: 1 MPGKLLWGDIMELEAPLEESESQKKERQKSDRRKSRHHYDSDEKSETRENGVTDDLDAPK 60
Query: 76 -------------------NLKSEKEKKKKKKAKVEPEAGVEEQER--------GESEHP 108
L E K K + K P ++E E+ S H
Sbjct: 61 AKKTKMKEKLNGDTEEGFNRLSDEFSKSHKSRRKGLPNGDIDEYEKKSKRVSSLDSSTHK 120
Query: 109 N----------------AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
+ A S F IS + LK +G+ LFPIQ TF V +G DL+ +
Sbjct: 121 SSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQ 180
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYG 211
ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF D+
Sbjct: 181 ARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI-- 234
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D
Sbjct: 235 -TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVD 293
Query: 272 EMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG
Sbjct: 294 QMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGK 353
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLPGAR 387
KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 354 MTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMA------- 406
Query: 388 ALHGDIQQSQREV---------TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQC--EP 436
++ I+Q+ + + + GF +L+ V + +Q +
Sbjct: 407 -MNPHIKQNAKSILEPLPRSFSSAWGFVLESDHSLLVLKVYIGPSLLQSLQTLTWAPHNH 465
Query: 437 PRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKA 495
P+DVE+YIHRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+
Sbjct: 466 PQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKS 525
Query: 496 AGVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
++A ++ VS + + F+ +A+ L+ G
Sbjct: 526 KSMDAIRSLASVSYAAVDFFRPSAQRLIEEKG 557
>gi|323453440|gb|EGB09312.1| hypothetical protein AURANDRAFT_895, partial [Aureococcus
anophagefferens]
Length = 591
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 192/439 (43%), Positives = 265/439 (60%), Gaps = 42/439 (9%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLD-GSDLVGRARTGQGKTLAFVLPIL 168
A+ F +S R+ L +GI+ LFPIQA TF + D G DL+ RARTG GKTLAF LP++
Sbjct: 1 ALGDFALSTGTRQALDKRGIKVLFPIQAATFAAIFDAGKDLLARARTGTGKTLAFALPVV 60
Query: 169 ESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPY 227
E L KA++ RAP LVL PTRELA+QV DF DV G L + C+YGG+ Y
Sbjct: 61 EKLL--LDKATQ-----RAPRALVLAPTRELAQQVLGDFSDVAHGR--LRTLCVYGGSAY 111
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL- 286
L++G+DVV+GTPGR D IE+G +D S+L F VLDEAD+ML MGF +++E I
Sbjct: 112 GPSCDALRRGVDVVVGTPGRTMDLIEKGVLDASALSFAVLDEADQMLDMGFKDELEKIFA 171
Query: 287 ---GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDK--KTIDLVGNEK----------- 330
A Q LLFSATLP WV++I+ + ++D + IDLVG+
Sbjct: 172 AMAPAGAPARARQLLLFSATLPPWVRNIAKAYAQTDASLEAIDLVGSGGGDARDGLGGIV 231
Query: 331 MKASTNVRHIVLPCSS-SARSQVIPDIIRCYSSGG--RTIIFTETKESASQLAD---LLP 384
+AST+V H +P +S S +VI D++ Y G R ++F ETK + + D +
Sbjct: 232 CQASTDVSHKCVPVASWSMNHKVINDVVGAYGLNGAARCVLFCETKAECNDVVDSKEITY 291
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP------R 438
RALHGDI Q+ RE T+A FR+G+F LVAT+VAARGLD+ V+L++ +PP
Sbjct: 292 ERRALHGDIPQALREKTMAAFRAGQFKILVATDVAARGLDMV-VELVVNNKPPATRSGWA 350
Query: 439 DVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAG 497
D E Y+HRSGRTGRAG G V LY + ++++ +IER++ F+ + AP+ D+ AA
Sbjct: 351 DAETYVHRSGRTGRAGRKGTCVTLYQTKHRATLEEIERKTKNAFDWVGAPRARDVLSAAA 410
Query: 498 VEAAETITQVSDSVIPAFK 516
A + V+ S +P F+
Sbjct: 411 DAALRAVEDVAPSALPCFE 429
>gi|224139612|ref|XP_002323192.1| predicted protein [Populus trichocarpa]
gi|222867822|gb|EEF04953.1| predicted protein [Populus trichocarpa]
Length = 551
Score = 309 bits (792), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 176/393 (44%), Positives = 246/393 (62%), Gaps = 15/393 (3%)
Query: 93 PEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
P+ G +E + +E +SR IS + L KGI LFPIQ + + G D+ GR
Sbjct: 28 PDYGYDEGK--GNEEGLEISRLGISQEIVGALAKKGITKLFPIQRAVLEPAMQGKDMFGR 85
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG 212
ARTG GKTLAF +PIL+ + + + + G GR P +V+ PTRELA+QV ++F
Sbjct: 86 ARTGTGKTLAFGIPILDKIL----QFNAQHGRGRYPLGIVMAPTRELARQVEKEFREAAP 141
Query: 213 AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADE 272
++ +T CLYGG P Q L+ G+DVV+GTPGRI D ++RG++ LS ++ VLDEAD+
Sbjct: 142 SLDIT--CLYGGTPISQQMRDLEYGVDVVVGTPGRIIDLMKRGSLVLSEVQHVVLDEADQ 199
Query: 273 MLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMK 332
ML +GFV+D+E IL V K ++ FSAT+PSW++ + K+LK D TIDLVG+ K
Sbjct: 200 MLGVGFVDDIETILSSV--PQKRHSMCFSATMPSWIRELVRKYLK-DPLTIDLVGDSDKK 256
Query: 333 ASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG---ARAL 389
+ + + A++ ++ +I ++ GG+ I+FTETK A +LA + AL
Sbjct: 257 LAEGITLYSIASDLYAKASILGPLITEHAKGGKCIVFTETKRDADRLAYAMAKTYKCEAL 316
Query: 390 HGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 449
HGDI QS RE TL+GFR G F LVAT+VAARGLD+ +V LII PR E ++HRSGR
Sbjct: 317 HGDISQSVRERTLSGFREGHFNILVATDVAARGLDVPNVDLIIHYALPRCSETFVHRSGR 376
Query: 450 TGRAGNTGVAVMLYDPRKS-SVSKIERESGVKF 481
TGRAG G A+++Y +S V IER++G KF
Sbjct: 377 TGRAGKKGTAILIYTQDESRQVRIIERDTGCKF 409
>gi|226510222|ref|NP_001147777.1| nucleolar RNA helicase 2 [Zea mays]
gi|195613718|gb|ACG28689.1| nucleolar RNA helicase 2 [Zea mays]
Length = 613
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 163/378 (43%), Positives = 247/378 (65%), Gaps = 14/378 (3%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
++R S + EKL ++GI LFPIQ + + G D++GRARTG GKTLAF +PI++
Sbjct: 97 IARLGTSPRIVEKLAARGITRLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDK 156
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ + ++K G GR P ++L PTRELA+QV ++F + L + C+YGG P + Q
Sbjct: 157 ILS----YNEKNGNGRNPLAIILAPTRELARQVEKEFRE---SAPLDTLCVYGGVPINQQ 209
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
L G+D+V+GTPGR+ D + RG ++LS ++F VLDEAD+ML +GF EDVE+I+ ++
Sbjct: 210 MRALNYGVDIVVGTPGRVIDLLRRGVLNLSQIQFVVLDEADQMLAVGFDEDVEVIMEQL- 268
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
Q++LFSAT+PSW++ IS K+LK D IDLVG+ K + + + +
Sbjct: 269 -PQNRQSMLFSATMPSWIRKISNKYLK-DPVIIDLVGDSDQKLPEGISLYSIASDNFGKP 326
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFRS 407
+I +I+ +++ G+ I+FT+TK A +LA ++ + +ALHGDI Q+QRE TL+GFR
Sbjct: 327 SIIGPLIKEHANVGKCIVFTQTKREADRLAYVMGRSYQCQALHGDISQNQRERTLSGFRD 386
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK 467
G+F LVAT+VAARGLDI +V L++ E P E ++HRSGRT RAG G A+++Y +
Sbjct: 387 GRFNILVATDVAARGLDIPNVDLVVHYEIPNTSELFVHRSGRTARAGKKGSAILIYTYEQ 446
Query: 468 S-SVSKIERESGVKFEHI 484
+ +V IE++ G +F +
Sbjct: 447 TRAVRVIEQDIGCRFTEL 464
>gi|108711872|gb|ABF99667.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
gi|215686855|dbj|BAG89705.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 597
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 171/375 (45%), Positives = 242/375 (64%), Gaps = 14/375 (3%)
Query: 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGT 244
GR P VLVL PTRELAKQV ++ + A L++ C+YGG Y+ Q+ L +G+DVV+GT
Sbjct: 17 GRIPRVLVLAPTRELAKQVEKE--IKESAPKLSTVCVYGGVSYNVQQNALSRGVDVVVGT 74
Query: 245 PGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304
PGRI D I G++ L +K+ VLDEAD+ML +GF EDVE IL ++ + Q++LFSAT+
Sbjct: 75 PGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQL--PAERQSMLFSATM 132
Query: 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
P WVK +S ++L ++ TIDLVG++ K + ++ +P +S+++ V+ D+I Y+ GG
Sbjct: 133 PGWVKKLSRRYL-NNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVYAKGG 191
Query: 365 RTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421
+TI+FT+TK A +++ L + ALHGDI Q QRE TL GFR GKF LVAT+VAAR
Sbjct: 192 KTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 251
Query: 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DPRKSSVSKIERESGVK 480
GLDI +V LII E P D E ++HRSGRTGRAG G A++++ + ++ +V +ER+ G +
Sbjct: 252 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCR 311
Query: 481 FEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAK 540
F+ IS P D+ +++ T+ V I F AAE L G +A LA ALA
Sbjct: 312 FDFISPPAIEDVLESSAEHVIATLRGVHTESIQYFIPAAERLQEELGPNA---LASALAH 368
Query: 541 AVVSAFLFSSSSNSL 555
+S F SS SL
Sbjct: 369 --LSGFSQPPSSRSL 381
>gi|108711873|gb|ABF99668.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
Length = 596
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 170/379 (44%), Positives = 241/379 (63%), Gaps = 16/379 (4%)
Query: 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGT 244
GR P VLVL PTRELAKQV ++ + A L++ C+YGG Y+ Q+ L +G+DVV+GT
Sbjct: 17 GRIPRVLVLAPTRELAKQVEKE--IKESAPKLSTVCVYGGVSYNVQQNALSRGVDVVVGT 74
Query: 245 PGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304
PGRI D I G++ L +K+ VLDEAD+ML +GF EDVE IL ++ + Q++LFSAT+
Sbjct: 75 PGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQL--PAERQSMLFSATM 132
Query: 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
P WVK +S ++L ++ TIDLVG++ K + ++ +P +S+++ V+ D+I Y+ GG
Sbjct: 133 PGWVKKLSRRYL-NNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVYAKGG 191
Query: 365 RTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421
+TI+FT+TK A +++ L + ALHGDI Q QRE TL GFR GKF LVAT+VAAR
Sbjct: 192 KTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 251
Query: 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DPRKSSVSKIERESGVK 480
GLDI +V LII E P D E ++HRSGRTGRAG G A++++ + ++ +V +ER+ G +
Sbjct: 252 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCR 311
Query: 481 FEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAK 540
F+ IS P D+ +++ T+ V I F AAE L EL ALA
Sbjct: 312 FDFISPPAIEDVLESSAEHVIATLRGVHTESIQYFIPAAERL-------QEELGPNALAS 364
Query: 541 AVVSAFLFSSSSNSLSLTS 559
A+ FS +S SL S
Sbjct: 365 ALAHLSGFSQPPSSRSLIS 383
>gi|401411071|ref|XP_003884983.1| DEAD box RNA helicase, related [Neospora caninum Liverpool]
gi|325119402|emb|CBZ54955.1| DEAD box RNA helicase, related [Neospora caninum Liverpool]
Length = 853
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 170/407 (41%), Positives = 233/407 (57%), Gaps = 33/407 (8%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
+S + +S + L+ + I L P+Q + V G D +GRARTG GKT+AF LP++E
Sbjct: 131 LSNYNLSKQSLKSLQRRNITHLLPVQQAAYKDVFAGHDFIGRARTGTGKTIAFALPLVER 190
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ A K P ++ LLPTRELA+QVHE+FD G L S CLYGGA + Q
Sbjct: 191 VCASVGDAGLK--RREKPRIVALLPTRELAQQVHEEFDTLLGGR-LASVCLYGGAAEYPQ 247
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL---- 286
KL+ G+ VV+ PGR KD ++RG I L+ VLDEAD ML MGF EDVE IL
Sbjct: 248 LQKLRSGVSVVVACPGRFKDFMDRGEIGGKQLEAVVLDEADRMLEMGFREDVEEILQWTK 307
Query: 287 ----GKVEDANKVQTLLFSATLPSWVKHISTKFLK-----------SDKKTIDLVGNEKM 331
+D +Q LLF+ATLP W ++ +F++ +K + +
Sbjct: 308 KEREADSDDVPPLQMLLFTATLPQWALTLADRFMRKDRVVVDVVKLQEKASAASSSSPAD 367
Query: 332 KASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGR---TIIFTETKESASQLA---DLLPG 385
+ H+VL C+ +R+ V+ D++ Y+ GR IIF ETK+ + +A ++
Sbjct: 368 AKKGTIEHLVLFCAWQSRAHVLGDLLSLYTPPGRASSVIIFAETKQEVNSIAVASNIRHL 427
Query: 386 ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIH 445
LHGDI Q+QRE TL F+ GKF LVAT+VAARGL ++D+ L+IQ PPRDV+ YIH
Sbjct: 428 CAPLHGDIPQNQREATLNAFKKGKFACLVATDVAARGLHVDDLSLVIQISPPRDVDTYIH 487
Query: 446 RSGRTGRAGNTGVAVMLYDPRKSSVS---KIERESGVKFEHISAPQP 489
R+GRTGRAG TGV + L + S V +IER+ G F + PQP
Sbjct: 488 RAGRTGRAGRTGVCITLA--KLSDVQFLRRIERDGGFLFRRVGTPQP 532
>gi|212274773|ref|NP_001130659.1| uncharacterized protein LOC100191761 [Zea mays]
gi|194689766|gb|ACF78967.1| unknown [Zea mays]
Length = 598
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 169/379 (44%), Positives = 238/379 (62%), Gaps = 16/379 (4%)
Query: 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGT 244
GR P VLVL PTRELAKQV ++ + A L + C+YGG Y+ Q+ L +G+DVV+GT
Sbjct: 17 GRTPRVLVLAPTRELAKQVEKE--IKESAPKLGTVCVYGGVSYNVQQNALSRGVDVVVGT 74
Query: 245 PGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304
PGRI D I G++ L +++ VLDEAD+ML +GF EDVE IL ++ Q++LFSAT+
Sbjct: 75 PGRIIDLINGGSLQLGEVQYLVLDEADQMLAVGFEEDVETILQQLPAGR--QSMLFSATM 132
Query: 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
PSWVK +S ++L ++ TIDLVG++ K + ++ +P +++++ V+ D+I Y+ GG
Sbjct: 133 PSWVKKLSRRYL-NNPLTIDLVGDQDEKLAEGIKLYAIPLTTTSKRTVLSDLITVYAKGG 191
Query: 365 RTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421
+TI+FT TK+ A +++ L + ALHGDI Q QRE TL GFR GKF LVAT+VAAR
Sbjct: 192 KTIVFTRTKKDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 251
Query: 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DPRKSSVSKIERESGVK 480
GLDI +V LII E P D E ++HRSGRTGRAG G A++++ +K +V +ER+ G
Sbjct: 252 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTSSQKRTVKSLERDVGCN 311
Query: 481 FEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAK 540
FE IS P ++ +++ T+ V F AAE+L EL ALA
Sbjct: 312 FEFISPPSIEEVLESSAEHVIATLRGVHPESTKYFLGAAEKL-------TEELGPHALAS 364
Query: 541 AVVSAFLFSSSSNSLSLTS 559
A+ FS +S SL S
Sbjct: 365 ALAHLSGFSQPPSSRSLIS 383
>gi|301108607|ref|XP_002903385.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262097757|gb|EEY55809.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 666
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 172/447 (38%), Positives = 259/447 (57%), Gaps = 47/447 (10%)
Query: 91 VEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLV 150
+EP G +Q+ ++ F +S + L+ G+ LFP+Q +FD+++ GSD++
Sbjct: 72 LEPLQGFVDQK--------PIADFDLSQETQRNLERAGVTHLFPVQTQSFDVMMKGSDIM 123
Query: 151 GRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210
GR++TG GKTLAF LP +E++ A++K R P LVLLPTRELA+QVH+ V
Sbjct: 124 GRSKTGSGKTLAFALPTIETIL-----ANRKNT--RNPQALVLLPTRELAQQVHDQ--VQ 174
Query: 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270
A L + + GG Y QE +L++G+D+++GTPGRI D +++G++ L + VLDEA
Sbjct: 175 RVAPQLRTINVVGGVSYTVQENQLRRGVDILVGTPGRIMDLVDKGSLSLEDVDVSVLDEA 234
Query: 271 DEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK 330
D ML+ GF E VE ILG V D QTL+ IDLVG+
Sbjct: 235 DMMLKFGFQEAVETILGWVPDGG--QTLV----------------------NIDLVGDND 270
Query: 331 MKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG--ARA 388
V H + S R QV+ +++R ++ G+T++FTETK+ A ++A+ LPG ARA
Sbjct: 271 NHVPATVAHKAILAPSRDRIQVLENVLRLHAHDGQTLVFTETKQEADEIANSLPGQDARA 330
Query: 389 LHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSG 448
LHGD+ Q R T+ GFR+G TLV T++AARGLDI +V+L++Q P D E+++HR+G
Sbjct: 331 LHGDLSQGMRTSTMNGFRNGHVKTLVCTDIAARGLDIANVELVVQYRLPSDKESFVHRAG 390
Query: 449 RTGRAGNTGVAVMLYDPRKSS-VSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQV 507
RTGRAG +G ++ +D +S V ER KF H + P+P + A + + ++ +
Sbjct: 391 RTGRAGRSGTNIVFFDRNDTSDVLDFERRYKFKFAHAAPPRPEQMMTGALEDVNKQLSSL 450
Query: 508 SDSVIPAFKSAAEELLNNSG---LSAA 531
+ F AA+ ++ G LSAA
Sbjct: 451 PKANAQLFDEAAQAMIEQQGPGVLSAA 477
>gi|328949667|ref|YP_004367002.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis
DSM 14884]
gi|328449991|gb|AEB10892.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis
DSM 14884]
Length = 517
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 167/378 (44%), Positives = 229/378 (60%), Gaps = 22/378 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+++ L+ +G +L P+QA T L+G D++ +ARTG GKTLAF LPI E L P +A
Sbjct: 12 VQQALRERGFTTLTPVQAATLPHALEGRDVIAQARTGTGKTLAFALPIAERLE--PARAK 69
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
GRAP LVL PTRELA QV + D A L +YGG Y Q L++G D
Sbjct: 70 -----GRAPRALVLAPTRELALQVAGELD--WAAPHLEVLTVYGGTGYGQQAQALRRGCD 122
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+ TPGR D++ RG +DL+ ++ VLDEADEML MGF EDVE +L A QTL+
Sbjct: 123 VVVATPGRALDYLRRGVLDLARVEVVVLDEADEMLSMGFEEDVEALLAAAVSAR--QTLV 180
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSAT+PSW + ++ + LK D +LV +E + R + + ++ R V+ D++
Sbjct: 181 FSATMPSWARRLAERHLK-DPFVANLVKDE----AVTYRELAIEAPTATRIAVLSDVLHA 235
Query: 360 YSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVA 415
Y +G R I+FT TK LA L G R A+HGD+ Q+ RE +A FR G LVA
Sbjct: 236 YGAG-RAIVFTRTKAETDALATALAGRRHAAEAVHGDLSQAARERVVARFRKGLVRVLVA 294
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIE 474
T+VAARGLD+ +V+L++ P VE Y HRSGRTGRAG TG V+LY PR + +V+ +E
Sbjct: 295 TDVAARGLDVPEVELVVHYRLPERVEVYQHRSGRTGRAGRTGTVVLLYGPRERRTVADLE 354
Query: 475 RESGVKFEHISAPQPADI 492
R +FE ++ P P ++
Sbjct: 355 RALRRRFERLAPPTPGEV 372
>gi|440297912|gb|ELP90553.1| ATP-dependent RNA helicase DDX50, putative [Entamoeba invadens IP1]
Length = 759
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 185/518 (35%), Positives = 283/518 (54%), Gaps = 57/518 (11%)
Query: 37 KSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKKKKKAKVEPEAG 96
K S K K KK S+ E +++++ + + P N S PE+
Sbjct: 48 KKSANKDFIKPTPKKKVASSDSESDDKKTPSKTSSKSPENFASP----------AIPESP 97
Query: 97 VEEQERG---ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRA 153
+ +Q G +E P IS+ + LK +GI SLFPIQ T+ + +G D+VG+A
Sbjct: 98 MPDQNPGSFDNTEPP-------ISLEAQAMLKERGITSLFPIQISTYAPIYEGLDVVGKA 150
Query: 154 RTGQGKTLAFVLPILESL-TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG 212
+TG GKT++F LP+LE + P + + P V++L PTRELA Q+ E+ V
Sbjct: 151 QTGSGKTISFTLPLLERMRATNPARE-------KLPRVIILSPTRELATQILEE--VEKC 201
Query: 213 AVGLTSC-CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
++G+ S C+YGG Q KL+ G+D+V+GTPGR+ DHI RG++ LS+++ +LDEAD
Sbjct: 202 SLGVYSLLCIYGGVEMFPQTSKLRSGVDIVVGTPGRVLDHINRGSLVLSNIETIILDEAD 261
Query: 272 EMLRMGFVEDVELIL----GKVEDANK-----------------VQTLLFSATLPSWVKH 310
+ML +GF ED+ IL G V D +K +QTLLFSAT+P WV
Sbjct: 262 QMLNIGFKEDLNKILEAIHGNVTDDSKSGKDGYKKTNLNANNKVIQTLLFSATVPDWVTE 321
Query: 311 ISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFT 370
+S K+L+ D ID V + + +N +H C + + I +I+ Y+ GRTI+F
Sbjct: 322 VSEKYLREDHVKID-VTSTTTQMPSNAKHYACMCFPYNKVETIVPLIKTYNPNGRTIVFC 380
Query: 371 ETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIND 427
+TK+ + + A+ +HGDI Q+ R T+ GF+ +F L+AT+V ARG+DI+
Sbjct: 381 DTKKECGDICIKIGEHLSAQMIHGDINQTLRTQTIKGFKEDRFSVLIATDVVARGIDISG 440
Query: 428 VQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK-SSVSKIERESGVKFEHISA 486
V LII P+D+ Y+HR+GRT RAG G+ V LY + S++ IE+ KFE I
Sbjct: 441 VDLIIMTRVPKDIPQYVHRAGRTARAGKEGITVTLYTMAEISALGMIEKSVNFKFERIGV 500
Query: 487 PQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLN 524
PQP +A+ A + + + V S+ A+++L+
Sbjct: 501 PQPETLARFAVLGLSGDMKDVKKSLYNVHMDTAQQVLD 538
>gi|307104451|gb|EFN52705.1| hypothetical protein CHLNCDRAFT_36787, partial [Chlorella
variabilis]
Length = 689
Score = 301 bits (770), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 180/410 (43%), Positives = 256/410 (62%), Gaps = 24/410 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L+ +GI SLFPIQ F+ + G+DL+ RA+TG GKTLAF +PI+E + GP
Sbjct: 166 LEERGITSLFPIQKTVFEPAMRGADLIARAKTGSGKTLAFAIPIIEKIMAGPRNL----- 220
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
R P LVL PTRELAKQV + + A GL C YGG P Q +L++G+D+V+G
Sbjct: 221 --RKPQCLVLAPTRELAKQVERE--IAATAPGLGCGCYYGGNPIGPQLKELRRGVDIVVG 276
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGRI D I++ +DLS ++F VLDEAD+ML +GF +DVE IL V + QT+LFSAT
Sbjct: 277 TPGRIIDLIDQDALDLSMVRFVVLDEADQMLNVGFEKDVETILENV--PQERQTMLFSAT 334
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKM-KASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
LP WVK + ++L ++ + IDLVG + ++ + +P + AR V+ D++ Y
Sbjct: 335 LPRWVKKLVKQYL-NNPENIDLVGEGNTGQDPDSITALAVP--ADARRSVLVDLLTVYGE 391
Query: 363 GGRTIIFTETKESASQLADLLPG---ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
GG+ I+FT+TK A ++A + G ALHGD+ Q +RE LA FR+ K M LVAT+VA
Sbjct: 392 GGKAIVFTQTKREADEVAASVGGHLPCGALHGDMSQREREKVLASFRANKLMVLVATDVA 451
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK-SSVSKIERES- 477
ARGLDI DV +++ E P+D E+++HRSGRTGRAG +G A+ ++ P++ +I RE+
Sbjct: 452 ARGLDIPDVDVVVHYELPQDPESFLHRSGRTGRAGKSGTAIAMFQPKEIGYFKRILRETE 511
Query: 478 --GVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNN 525
GVK I+AP P + +AA + + V V F A+ LL++
Sbjct: 512 VQGVKL--ITAPSPTQVIEAAAKQVMYRLDGVDAEVRKYFTPVAKMLLSS 559
>gi|302783853|ref|XP_002973699.1| hypothetical protein SELMODRAFT_99603 [Selaginella moellendorffii]
gi|302787961|ref|XP_002975750.1| hypothetical protein SELMODRAFT_103888 [Selaginella moellendorffii]
gi|300156751|gb|EFJ23379.1| hypothetical protein SELMODRAFT_103888 [Selaginella moellendorffii]
gi|300158737|gb|EFJ25359.1| hypothetical protein SELMODRAFT_99603 [Selaginella moellendorffii]
Length = 445
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 163/384 (42%), Positives = 240/384 (62%), Gaps = 11/384 (2%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQ-AMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
AV++ I + L K I +LFP+Q + + + G D + RA+TG GKTLAF LPIL
Sbjct: 5 AVAKLGIDPEIVRALAQKNIINLFPVQQSAVYQPAMKGRDFIARAKTGTGKTLAFGLPIL 64
Query: 169 ESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYH 228
++T +A+ +T G P +V+ PTRELAKQV ++ A LT C+YGG
Sbjct: 65 HTITVERREATSRTQPG-CPRCIVMAPTRELAKQVEKELT--STAPHLTLVCIYGGVSIE 121
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
+Q L++ IDVV+GTPGR+ D ++RG++ L+ +KF VLDEAD+ML GF EDVE I+ +
Sbjct: 122 SQRRSLERPIDVVVGTPGRVIDMLQRGSLLLNRVKFMVLDEADQMLATGFAEDVEKIMER 181
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348
+ + QT++FSAT+PSWVK++ +F++ D +DLVG+ K + ++ S
Sbjct: 182 L--PKQRQTMMFSATMPSWVKNLLRRFMQ-DPLVVDLVGDNDEKLAEGIKLYSCEASDYN 238
Query: 349 RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGF 405
+ ++ +++ Y GG+ I+F +TK +A + + ALHGDI Q QRE TL+GF
Sbjct: 239 KGPLLKELVNSYGKGGKVIVFAKTKRDTHNVAQAMSRSVPCEALHGDIPQFQRERTLSGF 298
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
R G+F LVAT+VAARGLDI +V L+I E P D E ++HRSGRTGRAG GVA++++
Sbjct: 299 RDGRFSVLVATDVAARGLDIPNVDLVIHYEVPGDSETFVHRSGRTGRAGKKGVAILMHTY 358
Query: 466 RKSSV-SKIERESGVKFEHISAPQ 488
+ V IE + G +FE ++ P
Sbjct: 359 AQGRVRDTIEHDVGCRFEALNVPN 382
>gi|355562543|gb|EHH19137.1| hypothetical protein EGK_19783 [Macaca mulatta]
Length = 690
Score = 297 bits (761), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 186/470 (39%), Positives = 253/470 (53%), Gaps = 77/470 (16%)
Query: 88 KAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGS 147
KA E G +QE + A S F IS E++ ++A TF V G
Sbjct: 187 KAASEESNGDIDQEISVEQKEGAFSNFPISE-----------ETIKLLKAKTFHHVYSGK 235
Query: 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207
DL+ +ARTG GKT +F +P++E L +G + K+ GR P VLVL PTRELA QV +DF
Sbjct: 236 DLIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRPPQVLVLAPTRELANQVSKDF 291
Query: 208 -DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK V
Sbjct: 292 SDI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQSGKLDLTKLKHVV 348
Query: 267 LDEADEMLRMGFVEDVELILG----KVEDANKVQTLL---------FSATLPSWVKHIST 313
LDE D+ML MGF + VE IL KV + L+ FS T WV +++
Sbjct: 349 LDEVDQMLDMGFADQVEEILSVAYKKVMGFTMLSRLILKTIPKHCFFSETCLHWVFNVAK 408
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTET 372
K++KS + +DL+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ET
Sbjct: 409 KYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCET 468
Query: 373 KESASQLAD---LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQ 429
K+ A +L+ + A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V
Sbjct: 469 KKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVD 528
Query: 430 LIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSKIERESGVKFEHISAPQP 489
L+IQ PP+ G+KF+ I P
Sbjct: 529 LVIQSSPPK---------------------------------------GIKFKRIGVPSA 549
Query: 490 ADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALA 539
+I KA+ +A + V + I FK +AE+L+ G A E LA LA
Sbjct: 550 TEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKG--AVEALAATLA 597
>gi|159478160|ref|XP_001697172.1| hypothetical protein CHLREDRAFT_119793 [Chlamydomonas reinhardtii]
gi|158274646|gb|EDP00427.1| predicted protein [Chlamydomonas reinhardtii]
Length = 384
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 160/358 (44%), Positives = 232/358 (64%), Gaps = 14/358 (3%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL--TNGPTKAS 179
+ L ++GI SLFP+QA + + G D+V RA+TG GKTLAF LP++E+L +G +
Sbjct: 27 DALANRGIFSLFPVQAQVLEPIASGRDVVCRAKTGSGKTLAFALPVVENLLEVSGLRRPR 86
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
+ GR+P +VL PTRELA QV +F+ A+ + S YGG AQ L++G+D
Sbjct: 87 TRPRKGRSPRCVVLAPTRELANQVSREFESVCPALKVDS--FYGGVSISAQMRSLERGVD 144
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA--NKVQT 297
VV+GTPGR+ D ++RG++ L ++++ +LDEAD ML MGF +D+E ILG + A N+ QT
Sbjct: 145 VVVGTPGRVIDLMQRGSLKLDAVRYAILDEADSMLDMGFEQDMETILGAMPTAAANERQT 204
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKM-KASTNVRHIVLPCSSSARSQVIPDI 356
LLFSATLP WVK ++ ++ + + TIDLVG E + + +R +V + + + +
Sbjct: 205 LLFSATLPKWVKSVAKRY-QQNPLTIDLVGEENTGRLADTIRLLVQQVEGAQKMSALQGV 263
Query: 357 IRCY---SSGGRTIIFTETKESASQL---ADLLPGARALHGDIQQSQREVTLAGFRSGKF 410
+ Y + GG+ IIF TK A ++ + ALHGDI Q+QRE L+ FR GK+
Sbjct: 264 LSMYGNTAGGGKAIIFVNTKAKADEVNLAVNEFAPCDALHGDISQAQREKALSLFREGKY 323
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS 468
LVAT+VAARGLDI +V L++ + P+D EA++HRSGRTGRAG TG AV+L+ R+S
Sbjct: 324 AALVATDVAARGLDIPNVDLVVHYDVPQDNEAFLHRSGRTGRAGKTGTAVVLFTDRES 381
>gi|90076020|dbj|BAE87690.1| unnamed protein product [Macaca fascicularis]
Length = 353
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 165/355 (46%), Positives = 221/355 (62%), Gaps = 27/355 (7%)
Query: 74 PVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLF 133
PV L SE+ ++ E VE++E A S F IS + LK +G+ LF
Sbjct: 12 PVKLASEESN-----GDIDQEISVEQKE-------GAFSNFPISEETIKLLKGRGVTFLF 59
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQA TF V G DL+ +ARTG GKT +F +P++E L +G + K+ GR P VLVL
Sbjct: 60 PIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRPPQVLVL 115
Query: 194 LPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI 252
PTRELA QV +DF D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI
Sbjct: 116 APTRELANQVSKDFSDI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHI 172
Query: 253 ERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVK 309
+ G +DL+ LK VLDE D+ML MGF + VE IL K + + QTLLFSAT P WV
Sbjct: 173 QSGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVF 232
Query: 310 HISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTII 368
+++ K++KS + +DL+G + K + V H+ + C + R+ VI D+IR YS GRTII
Sbjct: 233 NVAKKYMKSTCEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTII 292
Query: 369 FTETKESASQLAD---LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
F ETK+ A +L+ + A++LHGDI Q QRE+TL GFR+G F LVATNVA
Sbjct: 293 FCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAC 347
>gi|308080376|ref|NP_001183357.1| uncharacterized protein LOC100501766 [Zea mays]
gi|223949963|gb|ACN29065.1| unknown [Zea mays]
gi|238010976|gb|ACR36523.1| unknown [Zea mays]
Length = 483
Score = 294 bits (753), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 156/345 (45%), Positives = 231/345 (66%), Gaps = 14/345 (4%)
Query: 144 LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203
+ G D+VGRA+TG GKTLAF +PI++++ + ++K G+ P +VL PTRELAKQV
Sbjct: 1 MQGRDMVGRAKTGTGKTLAFGIPIMDAII----RHNEKYKPGKFPLAIVLAPTRELAKQV 56
Query: 204 HEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLK 263
+F + L + C+YGG P Q KL G+DVVIGTPGR+ D ++RG++ L+ ++
Sbjct: 57 EREF---LDSSPLETLCVYGGTPIMQQIRKLNYGVDVVIGTPGRVIDLLKRGSLSLAEIR 113
Query: 264 FRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTI 323
F VLDEAD+ML +GF DVE IL +V QTL+FSAT+P+W++ ++ K+L ++ T+
Sbjct: 114 FVVLDEADQMLSVGFDLDVETILERVPPQR--QTLMFSATMPTWIRKLTQKYL-NNPVTV 170
Query: 324 DLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLL 383
DLVG + K + + + + + + V+ ++I+ ++ GG+ I+FT+TK A +L+ +
Sbjct: 171 DLVGEDDQKLAEGISLLAVSSENREKPAVLGELIKEHAKGGKCIVFTQTKRDADRLSHNM 230
Query: 384 PGA---RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ ALHGDI QSQRE TLAGFR G+F L+AT+VAARGLDI +V L+I E P
Sbjct: 231 SRSFQCEALHGDISQSQRERTLAGFRDGRFNILIATDVAARGLDIPNVDLVIHFELPNSS 290
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHI 484
E ++HRSGRTGRAG G A+++Y+ +S +V IER+ G KF +
Sbjct: 291 ELFVHRSGRTGRAGKKGTAIVMYNYDQSRAVRVIERDVGCKFTEL 335
>gi|414877991|tpg|DAA55122.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 472
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 155/345 (44%), Positives = 230/345 (66%), Gaps = 14/345 (4%)
Query: 144 LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203
+ G D+VGRA+TG GKTLAF +PI++++ + ++K G+ P +VL PTRELAKQV
Sbjct: 1 MQGRDMVGRAKTGTGKTLAFGIPIMDAII----RHNEKYKPGKFPLAIVLAPTRELAKQV 56
Query: 204 HEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLK 263
+F + L + C+YGG P Q +L G+DVVIGTPGR+ D ++RG + L+ ++
Sbjct: 57 EREF---LDSSPLETLCVYGGTPIMQQIKQLNYGVDVVIGTPGRVIDLLKRGALSLAEIR 113
Query: 264 FRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTI 323
F VLDEAD+ML +GF +DVE IL +V + QTL+FSAT+P+W++ ++ KFL S T+
Sbjct: 114 FVVLDEADQMLSVGFDKDVETILERVPPQH--QTLMFSATMPTWIRKLTQKFLNS-PVTV 170
Query: 324 DLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLL 383
DLVG + K + + + + + + V+ +I+ ++ GG+ I+FT+TK A +L+ +
Sbjct: 171 DLVGEDDQKLAEGISLLSVSSENREKPAVLGKLIKEHAKGGKCIVFTQTKRDADRLSHNM 230
Query: 384 PGA---RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ ALHGDI QS+RE TLAGFR G+F L+AT+VA+RGLDI +V L+I E P
Sbjct: 231 SRSFQCEALHGDISQSERERTLAGFRDGRFNILIATDVASRGLDIPNVDLVIHFELPNSS 290
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHI 484
E ++HRSGRTGRAG G A+++Y+ +S +V IER+ G KF +
Sbjct: 291 EIFVHRSGRTGRAGKKGTAIVMYNYEQSRAVRVIERDVGCKFTEL 335
>gi|340053887|emb|CCC48181.1| putative nucleolar RNA helicase II, fragment [Trypanosoma vivax
Y486]
Length = 567
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 188/483 (38%), Positives = 261/483 (54%), Gaps = 80/483 (16%)
Query: 80 EKEKKKKKKAKVE---PEAGVEEQ-ERGESEHPNAVSRFRISVPLREKLKSKGIESLFPI 135
E + K+A+ E P A EEQ G + S F +S + + L+ +GI SLFP+
Sbjct: 14 EGDANSAKRARTEDNRPTAADEEQPNNGSAAAGRPFSEFNLSSGIVQALEKQGIVSLFPV 73
Query: 136 QAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE---SLTNGPTKASKKTGYGRAPSVLV 192
QA+TF+ ++ G D++ +ARTG GKTLAF +PI+E SL GPT+ GR P+ ++
Sbjct: 74 QALTFEAIMRGEDVLVQARTGSGKTLAFGIPIIEKLNSLKEGPTR-------GRGPAAVI 126
Query: 193 LLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDH 251
PTRELA QV DV G + GL+ LYGG Y+ QE L G+DVV+ TPGR KD
Sbjct: 127 FCPTRELAIQVR---DVIAGISGGLSVTALYGGVAYNVQERALYSGVDVVVATPGRAKDF 183
Query: 252 IERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN-------KVQTLLFSATL 304
+E+G + +K LDEAD ML +GF ED+EL+L +V + N K QTLLFSAT+
Sbjct: 184 LEKGTLRFDRVKMVCLDEADHMLDIGFKEDIELLLQRVAEQNGSVPNEPKHQTLLFSATV 243
Query: 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
P WV S F+ +KK ID+VG M+A+ ++ CS S ++ D+++ YS G
Sbjct: 244 PDWVHTCS--FISKNKKFIDMVGQGAMRAANTIKFYRRKCSFGEVSGMLADLVKAYS--G 299
Query: 365 RTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLD 424
R HG TLV TN +
Sbjct: 300 R------------------------HG-------------------RTLVFTNTKK---N 313
Query: 425 INDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS-VSKIERESGVKFEH 483
+ V L+IQC PP D++A+IHR+GRTGRAG GV VML+ P+ V +IER + +KFE
Sbjct: 314 LPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVMLHQPKDEYIVERIERHAKIKFEV 373
Query: 484 ISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVV 543
+ AP +I KA +AAE + +V S F A ELL ++ E+LA A+ AV+
Sbjct: 374 LPAPTREEILKAVARDAAEDLARVERSATNLFLEQAAELLKDA--DPTEILASAI--AVM 429
Query: 544 SAF 546
S +
Sbjct: 430 SGY 432
>gi|313679216|ref|YP_004056955.1| ATP-dependent RNA helicase dbpa [Oceanithermus profundus DSM 14977]
gi|313151931|gb|ADR35782.1| ATP-dependent RNA helicase DbpA [Oceanithermus profundus DSM 14977]
Length = 528
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 167/382 (43%), Positives = 229/382 (59%), Gaps = 24/382 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L+ KGI + PIQ L G D++G ARTG GKTLAF LPI E L P++
Sbjct: 24 LEEKGIATPTPIQNEALPAALAGGDVLGLARTGTGKTLAFALPIAERLE--PSRTP---- 77
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
GR P LVL PTRELA QV + + A L +YGG Y +Q LK+G DVV+
Sbjct: 78 -GRPPRALVLAPTRELALQVAGELEWV--APHLRIVTVYGGTGYGSQAAALKRGADVVVA 134
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR D++ RG +DL+ ++ VLDEADEML MGF E VE +LG + QTL+FSAT
Sbjct: 135 TPGRAIDYLNRGVLDLAQVRIAVLDEADEMLSMGFEEAVETLLGAT--PAERQTLMFSAT 192
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
LP W K + + LK + +++V +E++ + R I + S SAR + D++ +
Sbjct: 193 LPGWAKRLVGRHLK-EPTVVNVVQDEEV----SYREIAIEASPSARMSALSDLLHAHGPE 247
Query: 364 GRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
R I+FT TK+ A ++A L A A+HGD+ Q+QRE ++ FRSG+ LVAT+VA
Sbjct: 248 -RAIVFTRTKKEADEVARALTARGHAAEAVHGDLNQTQRERSVGRFRSGQVGVLVATDVA 306
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESG 478
ARGLDI +V L++ P E+Y HRSGRTGRAG +G ++ + R + + ++ER G
Sbjct: 307 ARGLDIPEVDLVVHLRLPERAESYQHRSGRTGRAGRSGTVIIFHSSRERRELGQLERAVG 366
Query: 479 VKFEHISAPQPADI--AKAAGV 498
KFEH AP P ++ AK AG+
Sbjct: 367 RKFEHGRAPAPEEVQQAKIAGL 388
>gi|452819914|gb|EME26964.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 671
Score = 285 bits (728), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 166/423 (39%), Positives = 249/423 (58%), Gaps = 23/423 (5%)
Query: 117 SVPLRE----KLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT 172
++P+RE +LK+ GI LFP+Q ++ + G D+V R++TG GKTLA+VLP++E +
Sbjct: 85 NLPIREETKERLKASGITRLFPVQQKCWNPIWQGKDVVVRSQTGTGKTLAYVLPLIEKAS 144
Query: 173 NGPTKA-SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
G KA +K+TG +P ++VL PTRELA+QV E+F L C+YGGAPY QE
Sbjct: 145 LGHFKAHTKRTG---SPFIVVLAPTRELARQVFEEFGKL--ETTLLGACIYGGAPYRPQE 199
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
+L+ + ++GTPGR+ D + + L ++ VLDEAD ML +GF ++E IL V
Sbjct: 200 EQLRNCLSFLVGTPGRVADMCRKNLLHLELVQCIVLDEADRMLEIGFASELEQILSAV-S 258
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK-MKASTNVRHIVLPCSSSARS 350
NK QTLLFSATLP+WVK S K ++ + +DLVG +K K +V+H + A+
Sbjct: 259 GNK-QTLLFSATLPTWVKQQSAKNMR-NPAFLDLVGEDKDAKIPKDVKHYAIEVPPFAKE 316
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVTLAGFRS 407
VI DI+ + G + IIFT TK A L + + +HGDI Q RE+ + GFR
Sbjct: 317 AVIGDILSVF-GGEKCIIFTPTKREADMLGSSEYIRDESTVIHGDIPQDGRELAINGFRK 375
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQ----CEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
GKF L+AT+VAARG+DI +V ++ P ++ Y+HRSGRTGRAGN G ++++Y
Sbjct: 376 GKFRNLIATDVAARGIDIPNVDFVLMTYTPTPTPESIDMYVHRSGRTGRAGNKGKSMLIY 435
Query: 464 -DPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEEL 522
K + ++ER G++FE + P + + + + + DS++ E+
Sbjct: 436 SQAEKDKLLRLERALGIRFERLHPPSSEQLLMVSLERSWKKVLGTPDSLVSQVLPILEDK 495
Query: 523 LNN 525
+ N
Sbjct: 496 IKN 498
>gi|221504525|gb|EEE30198.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii VEG]
Length = 1279
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 211/654 (32%), Positives = 328/654 (50%), Gaps = 134/654 (20%)
Query: 8 DGKEVKDEKKMNKKMALKDFEE---TEAALTEKSSDKKKSKK----KESSKKRKESE--I 58
+G DE+ ++ +D E + A T + D ++SK + S KRKE E
Sbjct: 386 EGDYWSDERSAPEERGREDVSEEAKKKRAETGEERDAQRSKNLSETQTRSMKRKEQEDRT 445
Query: 59 EEEEERSETSSELGEPVNLK-SEKEKKKKKKAKVEPEAGVEEQERGE---SEHPNAVSRF 114
+EE +ET E GE + L E+E+ ++K A A G+ S HP
Sbjct: 446 AKEERFAETPDEDGETLTLLFPEEEEARQKTAVAAAAARAVAATTGKLFSSLHP------ 499
Query: 115 RISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE----- 169
+IS E L+++GI ++ PIQ+ +++++ +G D+V R+ TG GKT+ F LP++E
Sbjct: 500 KISTATVEALRARGITTMTPIQSESYEVLFEGRDVVARSETGSGKTIGFALPLMERERRE 559
Query: 170 ---------SLTNGPTKA---SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLT 217
+G + A S+ +G+ P +L+L PTRELA+QV ++ + G ++ L+
Sbjct: 560 MEKDFSRDSPAEDGNSSANDTSRDSGFYEQPRLLILEPTRELARQVAQEVERLGESLDLS 619
Query: 218 SCCLYGGAPYHAQEFKLKK--------------------------------GIDVVIGTP 245
S C+YGG P +Q +L++ +DV+I TP
Sbjct: 620 SFCVYGGVPMESQLRQLRREKQRTAGRLLSPGTPDGASSSEKRLRKQAASGRLDVLIATP 679
Query: 246 GRIKD--------HIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV-EDANKVQ 296
GR+ D + +IDLSS++ VLDEADEML++GF DVE IL KV E+ VQ
Sbjct: 680 GRLLDLMGLNEGRETPQRDIDLSSVRRVVLDEADEMLKLGFAADVERILQKVKENPFNVQ 739
Query: 297 TLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV--LPCSSSARSQV-- 352
+LFSAT P WV+ ++ L+ + ID++ K++ ST V H+ LP + + S +
Sbjct: 740 LILFSATTPGWVQDVAGTHLR-NPTNIDILAERKLRTSTTVSHLAVRLPSLTPSASALPR 798
Query: 353 ------------------IPDIIRCYSSGGR-TIIFTETKESASQLADLLP----GARAL 389
+ D+I S G+ I+F TK A LA+ GA L
Sbjct: 799 SSSSGRGSSSAVAAAAPLLQDLILAESENGKQAIVFVPTKADADALANAADFERVGASVL 858
Query: 390 HGDIQQSQREVTLAGFRSGK-------------------------FMTLVATNVAARGLD 424
HGDI Q R+ + GFR GK + L+AT+VAARG+D
Sbjct: 859 HGDIGQETRQAVMEGFRRGKSPFGELLLSQACFALNASSLPLESRYKVLIATDVAARGID 918
Query: 425 INDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS-VSKIERESGVKFEH 483
++ V L++ C P D + YIHRSGRTGRAG G +++L P++++ + ++ER G KF
Sbjct: 919 VDSVDLVLHCGVPTDADTYIHRSGRTGRAGRAGKSLVLVSPQETADLERLERACGFKFSF 978
Query: 484 ISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELL---NNSGLSAAELL 534
I P P I K+ A+ + +S SV+P F+ AAE++L N G+SA +++
Sbjct: 979 IHLPSPNAILKSGAATASRLLDSISPSVLPFFRPAAEDVLRRGNLHGVSAVDIV 1032
>gi|221482484|gb|EEE20832.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii GT1]
Length = 1295
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 205/643 (31%), Positives = 326/643 (50%), Gaps = 128/643 (19%)
Query: 10 KEVKDEKKMNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSS 69
+E +D + KK + EE +A ++S + +++ + +K +E +EE +ET
Sbjct: 416 REREDVSEEAKKKRAETGEERDA---QRSKNLSETQTRSMKRKEQEDRTAKEERFAETPD 472
Query: 70 ELGEPVNLK-SEKEKKKKKKAKVEPEAGVEEQERGE---SEHPNAVSRFRISVPLREKLK 125
E GE + L E+E+ ++K A A G+ S HP +IS E L+
Sbjct: 473 EDGETLTLLFPEEEEARQKTAVAAAAARAVAATTGKLFSSLHP------KISTATVEALR 526
Query: 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE--------------SL 171
++GI ++ PIQ+ +++++ +G D+V R+ TG GKT+ F LP++E
Sbjct: 527 ARGITTMTPIQSESYEVLFEGRDVVARSETGSGKTIGFALPLMERERREMEKDFSRDSPA 586
Query: 172 TNGPTKA---SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYH 228
+G + A S+ +G+ P +L+L PTRELA+QV ++ + G ++ L+S C+YGG P
Sbjct: 587 EDGNSSANDTSRDSGFYEQPRLLILEPTRELARQVAQEVERLGESLDLSSFCVYGGVPME 646
Query: 229 AQEFKLKK--------------------------------GIDVVIGTPGRIKD------ 250
+Q +L++ +DV+I TPGR+ D
Sbjct: 647 SQLRQLRREKQRTAGRLLSPGTPDGASSSEKRLRKQAASGRLDVLIATPGRLLDLMGLNE 706
Query: 251 --HIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV-EDANKVQTLLFSATLPSW 307
+ +IDLSS++ VLDEADEML++GF DVE IL KV E+ VQ +LFSAT P W
Sbjct: 707 GRETPQRDIDLSSVRRVVLDEADEMLKLGFAADVERILQKVKENPFNVQLILFSATTPGW 766
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV--LPCSSSARSQV------------- 352
V+ ++ L+ + ID++ K++ ST V H+ LP + + S +
Sbjct: 767 VQDVAGTHLR-NPTNIDILAERKLRTSTTVSHLAVRLPSLTPSASALPRSSSSGRGSSSA 825
Query: 353 -------IPDIIRCYSSGGR-TIIFTETKESASQLADLLP----GARALHGDIQQSQREV 400
+ D+I S G+ I+F TK A LA+ GA LHGDI Q R+
Sbjct: 826 VAAAAPLLQDLILAESENGKQAIVFVPTKADADALANAADFERVGASVLHGDIGQETRQA 885
Query: 401 TLAGFRSGK-------------------------FMTLVATNVAARGLDINDVQLIIQCE 435
+ GFR GK + L+AT+VAARG+D++ V L++ C
Sbjct: 886 VMEGFRRGKSPFGELLLSQACFALNASGLPLESRYKVLIATDVAARGIDVDSVDLVLHCG 945
Query: 436 PPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS-VSKIERESGVKFEHISAPQPADIAK 494
P D + YIHRSGRTGRAG G +++L P++++ + ++ER G KF I P P I K
Sbjct: 946 VPTDADTYIHRSGRTGRAGRAGKSLVLVSPQETADLERLERACGFKFSFIHLPSPNAILK 1005
Query: 495 AAGVEAAETITQVSDSVIPAFKSAAEELL---NNSGLSAAELL 534
+ A+ + +S SV+P F+ AAE++L N G+SA +++
Sbjct: 1006 SGAATASRLLDSISPSVLPFFRPAAEDVLRRGNLHGVSAVDIV 1048
>gi|237841471|ref|XP_002370033.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
gi|211967697|gb|EEB02893.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
Length = 1258
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 210/654 (32%), Positives = 327/654 (50%), Gaps = 134/654 (20%)
Query: 8 DGKEVKDEKKMNKKMALKDFEE---TEAALTEKSSDKKKSKK----KESSKKRKESE--I 58
+G DE+ ++ +D E + A T + D ++SK + S KRKE E
Sbjct: 383 EGDYWSDERSAPEERGREDASEEAKKKRAETGEERDAQRSKNLSETQTRSMKRKEQEDRT 442
Query: 59 EEEEERSETSSELGEPVNLK-SEKEKKKKKKAKVEPEAGVEEQERGE---SEHPNAVSRF 114
+E+ ET E GE + L E+E+ ++K A A G+ S HP
Sbjct: 443 AKEQRFGETPDEDGETLTLLFPEEEEARQKTAVAAAAARAVAATTGKLFSSLHP------ 496
Query: 115 RISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE----- 169
+IS E L+++GI ++ PIQ+ +++++ +G D+V R+ TG GKT+ F LP++E
Sbjct: 497 KISTATVEALRARGITTMTPIQSESYEVLFEGRDVVARSETGSGKTIGFALPLMERERRE 556
Query: 170 ---------SLTNGPTKA---SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLT 217
+G + A S+ +G+ P +L+L PTRELA+QV ++ + G ++ L+
Sbjct: 557 MEKDFSRDSPAEDGNSSANDTSRDSGFYEQPRLLILEPTRELARQVAQEVERLGESLDLS 616
Query: 218 SCCLYGGAPYHAQEFKLKK--------------------------------GIDVVIGTP 245
S C+YGG P +Q +L++ +DV+I TP
Sbjct: 617 SFCVYGGVPMESQLRQLRREKQRTAGRLLSPGTPDGASSSEKRLRKQAASGRLDVLIATP 676
Query: 246 GRIKD--------HIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV-EDANKVQ 296
GR+ D + +IDLSS++ VLDEADEML++GF DVE IL KV E+ VQ
Sbjct: 677 GRLLDLMGLNEGRETPQRDIDLSSVRRVVLDEADEMLKLGFAADVERILQKVKENPFNVQ 736
Query: 297 TLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV--LPCSSSARSQV-- 352
+LFSAT P WV+ ++ L+ + ID++ K++ ST V H+ LP + + S +
Sbjct: 737 LILFSATTPGWVQDVAGTHLR-NPTNIDILAERKLRTSTTVSHLAVRLPSLTPSASALPR 795
Query: 353 ------------------IPDIIRCYSSGGR-TIIFTETKESASQLADLLP----GARAL 389
+ D+I S G+ I+F TK A LA+ GA L
Sbjct: 796 SSSSGRGSSSAVAAAAPLLQDLILAESENGKQAIVFVPTKADADALANAADFERVGASVL 855
Query: 390 HGDIQQSQREVTLAGFRSGK-------------------------FMTLVATNVAARGLD 424
HGDI Q R+ + GFR GK + L+AT+VAARG+D
Sbjct: 856 HGDIGQETRQAVMEGFRRGKSPFGELLLSQACFALNASGLPLESRYKVLIATDVAARGID 915
Query: 425 INDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS-VSKIERESGVKFEH 483
++ V L++ C P D + YIHRSGRTGRAG G +++L P++++ + ++ER G KF
Sbjct: 916 VDSVDLVLHCGVPTDADTYIHRSGRTGRAGRAGKSLVLVSPQETADLERLERACGFKFSF 975
Query: 484 ISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELL---NNSGLSAAELL 534
I P P I K+ A+ + +S SV+P F+ AAE++L N G+SA +++
Sbjct: 976 IHLPSPNAILKSGAATASRLLDSISPSVLPFFRPAAEDVLRRGNLHGVSAVDIV 1029
>gi|149177361|ref|ZP_01855966.1| ATP-dependent RNA helicase DeaD [Planctomyces maris DSM 8797]
gi|148843886|gb|EDL58244.1| ATP-dependent RNA helicase DeaD [Planctomyces maris DSM 8797]
Length = 606
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 168/404 (41%), Positives = 234/404 (57%), Gaps = 24/404 (5%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
P+ + L G ++ PIQA T +L+G DLVG+A+TG GKT AF LP+L
Sbjct: 19 PILDVLVELGYDTPTPIQAQTIPHLLEGRDLVGQAQTGTGKTAAFALPLL---------- 68
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKG 237
SK RAP VLVL PTRELA QV E F YG + GL +YGGA + Q LK+G
Sbjct: 69 SKIDLELRAPQVLVLAPTRELAIQVGESFKEYGSQLKGLQVLPIYGGADFKGQLQPLKRG 128
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
+ VV+GTPGR+ DH+ RG + L +L+ VLDEADEMLRMGF++DVE IL + D + QT
Sbjct: 129 VHVVVGTPGRVMDHMRRGTLKLDNLRCLVLDEADEMLRMGFIDDVEWILEQTPDNH--QT 186
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P ++ I+ +LKS + ++ +K + + +R + + I+
Sbjct: 187 ALFSATMPEAIRRIAGNYLKSPQ---EITVKDKTRTADTIRQRYWLAKGHHKLDALTRIL 243
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
+ G IIF TK ++L++ L A L+GDI Q QRE T+ ++G +
Sbjct: 244 EAEETDG-VIIFVRTKSITTELSEKLEARGFLAAPLNGDIPQKQRERTVGRLKAGHVNIV 302
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSK 472
+AT+VAARGLD++ + +I + P D EAY+HR GRTGRAG TG A+M PR + S+S
Sbjct: 303 IATDVAARGLDVDRISHVINYDLPGDSEAYVHRIGRTGRAGRTGEAIMFVSPREQRSLSG 362
Query: 473 IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFK 516
IER +K E + P I K E++T+ DS P F+
Sbjct: 363 IERAIKLKIERMELPSINQINKRRTERFKESVTKAMDS--PDFE 404
>gi|237829833|ref|XP_002364214.1| nucleolar RNA helicase, putative [Toxoplasma gondii ME49]
gi|211961878|gb|EEA97073.1| nucleolar RNA helicase, putative [Toxoplasma gondii ME49]
gi|221507078|gb|EEE32682.1| nucleolar RNA helicase, putative [Toxoplasma gondii VEG]
Length = 840
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 194/521 (37%), Positives = 282/521 (54%), Gaps = 55/521 (10%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKES-EIEEEEERSETSSELGEP-- 74
M + A F E A S +K+S++ E+ E + ++R + ++E G+P
Sbjct: 1 MAPETAKSRFSREEGAAARPSKRRKRSEEASEETDTPETVEAQSAKKRRQATTEAGKPSA 60
Query: 75 -VNLKSEKEKKKKKKA---------KVEPEAGVEEQER------GESEHPNA----VSRF 114
V+ S + KK K EP + EE + ES P + +S +
Sbjct: 61 TVSGSSSRSAASKKTRCRDDSDDLLKAEPSSSKEENDEQDGDSDAESGRPASDSGLLSDY 120
Query: 115 RISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNG 174
+S + L+ +GI L P+Q + V G D VGRARTG GKT+AF LP++E +
Sbjct: 121 NLSKTSLKSLQKRGITRLLPVQQAAYRHVFAGRDFVGRARTGTGKTIAFALPLVERVCAS 180
Query: 175 -PTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
P + K P ++ LLPTRELA+QV E+F+ G L S CLYGGAP + Q K
Sbjct: 181 LPQPGNSK----EKPRIVTLLPTRELAQQVQEEFETLLGGR-LASVCLYGGAPEYPQLQK 235
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL------- 286
L+ G+ V++ PGR KD ++RG I L+ VLDEAD ML MGF EDVE IL
Sbjct: 236 LRSGVSVIVACPGRFKDFMDRGEIAGKQLEAVVLDEADRMLEMGFREDVEEILQWTRKER 295
Query: 287 --GKVEDANKVQTLLFSATLPSWVKHISTKFLKSD---------KKTIDLVGNEKMKAST 335
G+ E + +Q LLF+ATLP W ++ +F++ D ++T + + K T
Sbjct: 296 EEGEAEKTSSLQMLLFTATLPKWALTLADRFMRKDRVVVDVVKLQQTTETALCAEKKQGT 355
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGG---RTIIFTETKESASQLA---DLLPGARAL 389
+ H+V+ C+ +R+QV+ D++ Y+ G IIF ETK+ + +A ++ L
Sbjct: 356 -IEHLVVFCAWQSRAQVLGDLLALYTPPGLASSVIIFAETKQEVNSIAVASNIRHLCAPL 414
Query: 390 HGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 449
HGDI Q+QRE TL F+ GKF+ LVAT+VAARGL ++D+ L+IQ PPRDV+ YIHR+GR
Sbjct: 415 HGDIPQNQREATLNAFKKGKFVCLVATDVAARGLHVDDLSLVIQISPPRDVDTYIHRAGR 474
Query: 450 TGRAGNTGVAVMLYDPRKSS-VSKIERESGVKFEHISAPQP 489
TGRAG G+ + L + +IE + G F + PQP
Sbjct: 475 TGRAGRRGICITLAKLADVPFLRRIELDGGFLFRRVGTPQP 515
>gi|134096391|ref|YP_001101466.1| cold-shock DeaD box ATP-dependent RNA helicase (partial match)
[Herminiimonas arsenicoxydans]
gi|133740294|emb|CAL63345.1| putative ATP-dependent RNA helicase DeaD-like [Herminiimonas
arsenicoxydans]
Length = 826
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 178/423 (42%), Positives = 238/423 (56%), Gaps = 37/423 (8%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S +S PL LK G E+ PIQA T ++L+ SD++G+A+TG GKT AF LPIL +
Sbjct: 10 SDLNLSEPLLRVLKELGYEAPSPIQAATIPLLLNNSDVLGQAQTGTGKTAAFALPILSRI 69
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQ 230
K+T P LVL PTRELA QV E F Y + G +YGG Y AQ
Sbjct: 70 D------IKQT----TPQALVLAPTRELAIQVAEAFQRYASHIPGFHVLPIYGGQSYGAQ 119
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
L++G+ VV+GTPGR+ DH+E+G++DLS LK VLDEADEMLRMGF++DVE IL K
Sbjct: 120 LSALRRGVHVVVGTPGRVIDHLEKGSLDLSKLKTMVLDEADEMLRMGFIDDVETILQKTP 179
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
+A QT LFSAT+PS +K I+T +L+ D + I + K + N+R S +
Sbjct: 180 EAR--QTALFSATMPSAIKRIATTYLR-DPELITVAA--KTGTADNIRQRYWLVSGMQKL 234
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFR 406
+ + I+ + G IIF TK +LA L A A++GDIQQ QRE T+ +
Sbjct: 235 EALTRILEAETFDG-MIIFARTKLGTEELAGKLQARGFSAAAINGDIQQQQRERTIQQLK 293
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
GK LVAT+VAARGLD+ + +I + P D E+Y HR GRTGRAG +G A++ PR
Sbjct: 294 DGKIDILVATDVAARGLDVERISHVINYDVPHDPESYTHRIGRTGRAGRSGEAILFIAPR 353
Query: 467 KSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNN 525
+ ++ K IER + QP + VE V+D I FK E +
Sbjct: 354 ERNLLKAIERATR---------QPIAVLDLPSVEV------VNDVRISKFKDQIAETIAA 398
Query: 526 SGL 528
GL
Sbjct: 399 GGL 401
>gi|116073020|ref|ZP_01470282.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916]
gi|116068325|gb|EAU74077.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916]
Length = 599
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 159/396 (40%), Positives = 234/396 (59%), Gaps = 22/396 (5%)
Query: 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVL 165
E P+ + F S L + L KG + PIQA F ++ G DLVG+A+TG GKT AF L
Sbjct: 40 EEPSGFAGFGFSEALVKTLTEKGYKEPSPIQAAAFPELMLGRDLVGQAQTGTGKTAAFAL 99
Query: 166 PILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY-GGAVGLTSCCLYGG 224
P+LE L TK P LVL PTRELA QV E F Y G L +YGG
Sbjct: 100 PLLERLQKDATK----------PQALVLAPTRELAMQVAESFKAYSAGHPHLNVLAIYGG 149
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
+ + +Q LK+G+DVV+GTPGR+ DH+ +G +D + L+ VLDEADEMLRMGF++DVE
Sbjct: 150 SDFRSQIHALKRGVDVVVGTPGRVMDHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVEW 209
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344
IL ++ + +V +LFSAT+PS ++ +S ++L ++ ++ K K + +R +
Sbjct: 210 ILDQLPEERQV--VLFSATMPSEIRRLSKRYL---REPAEITIKTKEKEARRIRQRCITL 264
Query: 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQREV 400
+S + + + ++ + G IIF TK +++ L A L+GD+ Q+QRE
Sbjct: 265 QNSHKLEALNRVLEAVTGEG-VIIFARTKAITLNVSESLEAAGHDVAVLNGDVPQNQRER 323
Query: 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV 460
T+ R G LVAT+VAARGLD++ + L+I + P D EAY+HR GRTGRAG +G A+
Sbjct: 324 TVERLRKGTVNILVATDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRSGEAI 383
Query: 461 MLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKA 495
+ PR + V+ +ER G + E ++ P A+I ++
Sbjct: 384 LFVTPRERRFVNNLERAVGQEIEPMAIPSNAEINQS 419
>gi|311112058|ref|YP_003983280.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
gi|310943552|gb|ADP39846.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
Length = 695
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 181/484 (37%), Positives = 262/484 (54%), Gaps = 20/484 (4%)
Query: 66 ETSSELGE-PVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFR---ISVPLR 121
E+S E GE P N K++ + + + + A + E E +RF + +
Sbjct: 57 ESSLETGEKPTNEKADAAESMTAEPREDNAATKKNTEDNTHESHEEGTRFTDLGLDPRVL 116
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
L+ G E PIQ T ++LDG D+VG A+TG GKT AF LP L + + +
Sbjct: 117 SALEEVGYEKPSPIQEQTIPLLLDGKDVVGLAQTGTGKTAAFALPALSRMA----ELADI 172
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDV 240
G R VLVL PTRELA QV E F Y + T +YGG+PY Q L++G V
Sbjct: 173 NGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRRGAQV 232
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGR+ DH+E+G++DLS+L++ VLDEADEMLRMGF EDVE IL DA +V LF
Sbjct: 233 VVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVETILEGTPDAKQV--ALF 290
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P+ ++ I+ ++L +D + + K N+R + S + + ++
Sbjct: 291 SATMPNSIRKIAQQYL-NDPTEVRV--KTKTTTGANIRQRYMQVMHSHKLDAMTRVLEVE 347
Query: 361 SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
+ G I+F TK+ ++AD L A A++GDI Q RE T+ R G+ LVAT
Sbjct: 348 NYDG-IIVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVDALRDGRIDILVAT 406
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIER 475
+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG G A++ PR K + +IE+
Sbjct: 407 DVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRDGEAILFVTPREKYMLRQIEK 466
Query: 476 ESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLA 535
+ K E + P D+ + AE IT+ ++ F E N + AE +A
Sbjct: 467 ATRQKVEPMHMPTAQDVNSSRKQRFAEQITETIETEDLNFFRKIIEDYENEHDTTAEDIA 526
Query: 536 KALA 539
ALA
Sbjct: 527 AALA 530
>gi|291297189|ref|YP_003508587.1| DEAD/DEAH box helicase [Meiothermus ruber DSM 1279]
gi|290472148|gb|ADD29567.1| DEAD/DEAH box helicase domain protein [Meiothermus ruber DSM 1279]
Length = 556
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 173/452 (38%), Positives = 251/452 (55%), Gaps = 23/452 (5%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F + + + +++KG + PIQA + L+G D++G+ARTG GKTLAF +PI L
Sbjct: 4 SAFTLRPEVAQAIQAKGFTTATPIQAAAIPLALEGKDVLGQARTGTGKTLAFGIPIANRL 63
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
+ GRAP L+L PTRELA QV ++ + A LT +YGG Y Q
Sbjct: 64 DAARER-------GRAPRALILTPTRELALQVAKELEWL--APHLTITPIYGGTGYGKQA 114
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
LK+G DVV+ TPGR D++E+ +DLS ++ VLDEADEML MGF E VE +L
Sbjct: 115 EALKRGTDVVVATPGRAIDYLEQRVLDLSRIEIAVLDEADEMLSMGFEEAVEQLLEATPP 174
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
QTLLFSATLP+W + +S ++ K+ I+++ +E + + + + R
Sbjct: 175 TR--QTLLFSATLPTWARRLSERYQKAAIH-INVIKDEAI----SYEEVAIQAPIHNRLS 227
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRS 407
V+ D++ Y+ RTI+FT TK + LA L A +HGD+ Q RE + FRS
Sbjct: 228 VLSDLLFAYAPE-RTIVFTSTKAECNDLALGLESRAHSAAPIHGDMGQIDRERVMERFRS 286
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR- 466
G LVAT+VAARGLDI +V L++ P E+Y+HRSGRTGRAG +G V+LY PR
Sbjct: 287 GAVSVLVATDVAARGLDIPEVDLVVHYRLPDQNESYLHRSGRTGRAGRSGKVVILYGPRE 346
Query: 467 KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNS 526
K + +ERE F+ ++ P P ++ A A I + ++ ++ AE L+
Sbjct: 347 KRELETLERELKRNFKRVNPPTPEEVMAAKWAMLARRIAKQPEADKKLWREQAERLIAEG 406
Query: 527 GLSA-AELLAKALAKAVVSAFLFSSSSNSLSL 557
G+ A A +LA L A L + N +++
Sbjct: 407 GVDAVAGMLALILGGAPTPKSLMTGEENWVTV 438
>gi|300742137|ref|ZP_07072158.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
gi|300381322|gb|EFJ77884.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
Length = 719
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 168/422 (39%), Positives = 238/422 (56%), Gaps = 16/422 (3%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L+ G E PIQ T +LDG+D+VG A+TG GKT AF LP L + + + G
Sbjct: 143 LEEVGYEKPSPIQEQTIPPLLDGNDVVGLAQTGTGKTAAFALPALSRMA----ELADING 198
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
R VLVL PTRELA QV E F Y + T +YGG+PY Q L++G VV+
Sbjct: 199 VSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRRGAQVVV 258
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+E+G++DLS+L++ VLDEADEMLRMGF EDVE IL DA +V LFSA
Sbjct: 259 GTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVETILEGTPDAKQV--ALFSA 316
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ I+ ++L +D + + K N+R + S + + ++ +
Sbjct: 317 TMPNSIRKIAQQYL-NDPTEVRV--KTKTTTGANIRQRYMQVMHSHKLDAMTRVLEVENY 373
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G I+F TK+ ++AD L A A++GDI Q RE T+ R G+ LVAT+V
Sbjct: 374 DG-IIVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVDALRDGRIDILVATDV 432
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERES 477
AARGLD+ + L++ + P D E+Y+HR GRTGRAG G A++ PR K + +IE+ +
Sbjct: 433 AARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRDGEAILFVTPREKYMLRQIEKAT 492
Query: 478 GVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKA 537
K E + P D+ + AE IT+ ++ F E N + AE +A A
Sbjct: 493 RQKVEPMHMPTAQDVNSSRKQRFAEQITETIETEDLNFFRKIIEDYENEHDTTAEDIAAA 552
Query: 538 LA 539
LA
Sbjct: 553 LA 554
>gi|378549072|ref|ZP_09824288.1| hypothetical protein CCH26_03255 [Citricoccus sp. CH26A]
Length = 631
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 175/474 (36%), Positives = 258/474 (54%), Gaps = 28/474 (5%)
Query: 79 SEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAM 138
SE + +A+ E + E E+ A S I + ++ G E+ PIQA
Sbjct: 2 SEHAQNDHAQAQAETDTPTETDALTETPAGPAFSTLGIDSRVLAAIEDLGYETPSPIQAE 61
Query: 139 TFDMVLDGSDLVGRARTGQGKTLAFVLPILESL-----TNGPTKASKKTGYGRAPSVLVL 193
T ++L+G D+VG A+TG GKT AF +P L L NGP P +LVL
Sbjct: 62 TIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRLAELADVNGPANT---------PQILVL 112
Query: 194 LPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI 252
PTRELA QV E F Y + G+T +YGGAPY Q L++G VV+GTPGR+ DH+
Sbjct: 113 APTRELALQVAEAFTTYAKHIKGVTVLPVYGGAPYGPQLSGLRRGAQVVVGTPGRVIDHL 172
Query: 253 ERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 312
++G++DLS L++ VLDEADEMLRMGF E+V+ IL D + QT LFSAT+P ++ IS
Sbjct: 173 QKGSLDLSDLQYMVLDEADEMLRMGFAEEVDQILSATPD--QKQTALFSATMPRAIQRIS 230
Query: 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTET 372
K+L +++ K + N+R L + + + + I+ G I F T
Sbjct: 231 GKYLND---PVEVTVAAKNTTAGNIRQRFLQVTHQWKLEAMTRILETEEHDG-VIAFVRT 286
Query: 373 KESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV 428
+ + +L L A A+ GD+ Q+QRE T+ R+G+ LVAT+VAARGLD+ +
Sbjct: 287 RNATEELTTKLNARGFRAAAISGDVAQNQREKTVENLRAGRIDILVATDVAARGLDVERI 346
Query: 429 QLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487
+I + P D E+Y+HR GRTGRAG +G AV+ PR K + IE+ + E + P
Sbjct: 347 SHVINYDIPHDTESYVHRIGRTGRAGRSGDAVLFMTPREKYLLRSIEKATRQTVEQMPMP 406
Query: 488 QPADIAKAAGVEAAETITQ-VSDSVIPAFKSAAEELLNNSGLSAAELLAKALAK 540
AD+ + + + ITQ +++ + F+ + + + + A E +A ALAK
Sbjct: 407 SVADVNSSRLDKFSSQITQTLAEGELEVFRDLVDSYVEENDV-APEDVAAALAK 459
>gi|152981099|ref|YP_001355159.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
gi|151281176|gb|ABR89586.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
Length = 778
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 173/421 (41%), Positives = 235/421 (55%), Gaps = 37/421 (8%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
++S PL L+ G ES PIQA T ++L+ D++G+A+TG GKT +F LPIL +
Sbjct: 12 LKLSEPLLRVLQELGYESPSPIQAATIPLLLNNRDVLGQAQTGTGKTASFALPILARIDI 71
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEF 232
T P LVL PTRELA QV E F Y + G +YGG Y AQ
Sbjct: 72 KQT----------TPQALVLAPTRELAIQVAEAFQRYATYIPGFHVLPIYGGQSYGAQLS 121
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G+ VV+GTPGR+ DH+E+G++DLS +K VLDEADEMLRMGF++DVE IL K ++
Sbjct: 122 ALRRGVHVVVGTPGRVIDHLEKGSLDLSRIKTMVLDEADEMLRMGFIDDVETILQKTPES 181
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
QT LFSAT+PS +K I+T +L+ D I + K + N+R S +
Sbjct: 182 R--QTALFSATMPSAIKRIATTYLR-DPDLITVAA--KTGTADNIRQRYWLVSGMQKLDA 236
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSG 408
+ I+ + G IIF TK +LA L A A++GDIQQ QRE T+ + G
Sbjct: 237 LTRILEAENFDG-MIIFARTKLGTEELASKLQARGFSAAAINGDIQQQQRERTIQQLKDG 295
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS 468
K LVAT+VAARGLD+ + +I + P D E+Y HR GRTGRAG +G A++ PR+
Sbjct: 296 KIDILVATDVAARGLDVERISHVINYDVPHDPESYTHRIGRTGRAGRSGEAILFIAPRER 355
Query: 469 SVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
++ K IER + QP + + VEA V+D I FK E + G
Sbjct: 356 NLLKAIER---------ATRQPISVLELPSVEA------VNDVRISRFKEQIAETIAAGG 400
Query: 528 L 528
L
Sbjct: 401 L 401
>gi|445494630|ref|ZP_21461674.1| ATP-dependent RNA helicase [Janthinobacterium sp. HH01]
gi|444790791|gb|ELX12338.1| ATP-dependent RNA helicase [Janthinobacterium sp. HH01]
Length = 743
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 175/437 (40%), Positives = 248/437 (56%), Gaps = 30/437 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
+S PL + LK G ES PIQA T +LD D++G+A+TG GKT AF LPIL L
Sbjct: 15 LNLSAPLIKVLKEVGYESPSPIQAATIPSLLDNQDVLGQAQTGTGKTAAFALPILSRLD- 73
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEF 232
K+T P LVL PTRELA QV E F Y + G +YGG Y Q
Sbjct: 74 -----IKQT----TPQALVLAPTRELAIQVAEAFQTYATHIPGFHVLPIYGGQSYGPQLS 124
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G+ VV+GTPGR+ DH+++G++DLS LK VLDEADEMLRMGF++DVE IL + ++
Sbjct: 125 ALRRGVHVVVGTPGRVIDHLDKGSLDLSKLKTLVLDEADEMLRMGFIDDVERILQETPES 184
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
QT LFSAT+PS ++ I+ +L++ K ++ K + N+R S +
Sbjct: 185 R--QTALFSATMPSAIRRIANTYLRNPK---EITVAAKTGTNENIRQRYWLVSGMHKLDA 239
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSG 408
+ I+ + G IIF+ TK +LA L A A++GDIQQ+QRE T+ + G
Sbjct: 240 LTRILEAENFDG-MIIFSRTKLGTEELAQKLQARGFSAAAINGDIQQAQRERTIQQLKDG 298
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS 468
K LVAT+VAARGLD+ + ++ + P D E+Y HR GRTGRAG +G A++ PR+
Sbjct: 299 KIDILVATDVAARGLDVERISHVVNYDVPHDPESYTHRIGRTGRAGRSGEAILFITPREK 358
Query: 469 SVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSV----IPAFKSAAEELL 523
++ K IER + + P I V A+ +Q+S+++ + F+S E+
Sbjct: 359 NLLKSIERATRQPIGMLELPT---IQAVNDVRIAKFKSQISETLAQGELEQFQSLIEDFE 415
Query: 524 NNSGLSAAELLAKALAK 540
+ A E +A ALAK
Sbjct: 416 REQNIPAIE-IAAALAK 431
>gi|383808644|ref|ZP_09964182.1| DEAD/DEAH box helicase / helicase C-terminal domain / DbpA RNA
binding domain multi-domain protein [Rothia aeria F0474]
gi|383448538|gb|EID51497.1| DEAD/DEAH box helicase / helicase C-terminal domain / DbpA RNA
binding domain multi-domain protein [Rothia aeria F0474]
Length = 699
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 166/423 (39%), Positives = 239/423 (56%), Gaps = 18/423 (4%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L+ G E PIQ T ++LDG D+VG A+TG GKT AF LP L + + + G
Sbjct: 113 LEEVGYEKPSPIQEQTIPLLLDGKDVVGLAQTGTGKTAAFALPALSRMA----ELADING 168
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
R VLVL PTRELA QV E F Y + T +YGG+PY Q L++G VV+
Sbjct: 169 VSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRRGAQVVV 228
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+ +G++DLS+L++ VLDEADEMLRMGF EDVE IL DA +V LFSA
Sbjct: 229 GTPGRVIDHLNKGSLDLSNLQYLVLDEADEMLRMGFAEDVETILEGTPDAKQV--ALFSA 286
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+PS ++ I+ ++L +D + + K N+R + + S + + ++ +
Sbjct: 287 TMPSSIRKIAQQYL-NDPTEVRV--KTKTTTGANIRQRYMQVTHSHKLDAMTRVLEVENY 343
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G I+F TK+ ++AD L A A++GDI Q RE T+ R G+ LVAT+V
Sbjct: 344 DG-IIVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVDALRDGRIDILVATDV 402
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERES 477
AARGLD+ + L++ + P D E+Y+HR GRTGRAG G A++ PR + + +IE+ +
Sbjct: 403 AARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRDGEAILFVTPRERYMLRQIEKAT 462
Query: 478 GVKFEHISAPQPADIAKAAGVEAAETI-TQVSDSVIPAFKSAAEELLNNSGLSAAELLAK 536
K E + P D+ AE I T + + F+ ++ N ++ AE +A
Sbjct: 463 RQKVEPMRMPTAQDVNANRKQRFAEQITTTIETEDLDFFRQIIQDYENEHDIT-AEDIAA 521
Query: 537 ALA 539
ALA
Sbjct: 522 ALA 524
>gi|352093689|ref|ZP_08954860.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. WH 8016]
gi|351680029|gb|EHA63161.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. WH 8016]
Length = 602
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 160/398 (40%), Positives = 232/398 (58%), Gaps = 22/398 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
E E P+ S F S L + L KG + PIQ ++ G DLVG+A+TG GKT AF
Sbjct: 43 EPEAPSGFSEFGFSEALLKTLADKGYKEPSPIQKEAIPELMLGRDLVGQAQTGTGKTAAF 102
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY-GGAVGLTSCCLY 222
LP+LE L G PSVLVL PTRELA QV E F Y G L +Y
Sbjct: 103 ALPLLERLQ----------GDSPLPSVLVLAPTRELAMQVAEAFKAYSAGHPHLNVLAIY 152
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG+ + +Q L++G+DVV+GTPGR+ DH+ +G ++ S L+ VLDEADEMLRMGF++DV
Sbjct: 153 GGSDFRSQINALRRGVDVVVGTPGRVMDHMRQGTLNTSGLRSLVLDEADEMLRMGFIDDV 212
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E IL ++ + +V +LFSAT+P+ ++ +S ++L ++ ++ K K + +RH +
Sbjct: 213 EWILEQLPEERQV--VLFSATMPNEIRRLSKRYL---REPAEITIKTKEKEARRIRHRCI 267
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQR 398
+S + + + ++ + G IIF TK +A+ L A L+GD+ Q+QR
Sbjct: 268 TMQNSHKLEALNRVLEAVTGEG-VIIFARTKAITLTVAESLEAAGHDVAVLNGDVPQNQR 326
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E T+ R G LVAT+VAARGLD++ + L+I + P D EAY+HR GRTGRAG +G
Sbjct: 327 ERTVERLRKGTVNILVATDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRSGE 386
Query: 459 AVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKA 495
A++ PR + V +ER G E + P A+I ++
Sbjct: 387 AILFITPRERRFVGNLERAVGQAIEPMDIPSNAEINQS 424
>gi|254284072|ref|ZP_04959040.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
gi|219680275|gb|EED36624.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
Length = 598
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 180/440 (40%), Positives = 246/440 (55%), Gaps = 42/440 (9%)
Query: 108 PNAVSRF---RISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
P + RF R+ L + L G ES IQ+MT +LDG DLVG+A+TG GKT AF
Sbjct: 4 PEELGRFDELRLPDFLLKALADVGYESPSAIQSMTIPPLLDGHDLVGQAQTGTGKTAAFA 63
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYG 223
LP+L L TKA P LVL PTRELA QV E F Y + G +YG
Sbjct: 64 LPVLARLD---TKAG-------GPQALVLTPTRELAIQVAEAFQKYARYSKGFKVVPIYG 113
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283
G+ Y Q +L++G+ +++GTPGR+ DH+ RG++DLSSLK VLDEADEMLRMGF++DVE
Sbjct: 114 GSDYRTQLRQLQRGVHIIVGTPGRVMDHMRRGSLDLSSLKTLVLDEADEMLRMGFIDDVE 173
Query: 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343
IL + Q LFSAT+P ++ I+ L+S + ++ K + ++R V
Sbjct: 174 WILEQTPATR--QIALFSATMPDAIRRIAKTHLQSPQ---EITIKRKTVTNASIRQRVWI 228
Query: 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGDIQQSQR 398
+ + + I+ G IIF T+ + +LAD L AR AL+GDI Q+QR
Sbjct: 229 MAGVQKLDALTRILETEDYDG-VIIFVRTRIATQELADKL-AARGFATAALNGDIAQNQR 286
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E T+ F+ G+ LVAT+VAARGLD++ V +I + P D EAYIHR GRTGRAG TG
Sbjct: 287 EKTVDSFKRGQLDLLVATDVAARGLDVDRVSHVINYDIPNDPEAYIHRIGRTGRAGRTGE 346
Query: 459 AVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKS 517
A++ R + + IER +G K + ++ P +AE QV D FK+
Sbjct: 347 AILFAAKRERRLLHAIERTTGQKIDQMTLP------------SAE---QVVDKRAARFKA 391
Query: 518 AAEELLNNSGLSAAELLAKA 537
E L S LS+A L ++
Sbjct: 392 RITETLAASELSSARELVES 411
>gi|254425384|ref|ZP_05039102.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335]
gi|196192873|gb|EDX87837.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335]
Length = 570
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 155/376 (41%), Positives = 218/376 (57%), Gaps = 24/376 (6%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
P+ + L+ G E+ PIQA+T +LDG D++G+A+TG GKT AF LPIL + +
Sbjct: 16 PVLKALEDAGYETPTPIQALTIPPILDGRDIIGQAQTGTGKTAAFALPILSQIDISNSD- 74
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKG 237
P LVL PTRELA QV E F Y + G +YGG YH Q +L++
Sbjct: 75 ---------PQALVLAPTRELALQVAEAFQSYASHLKGFHVLPIYGGQSYHVQLKQLRRA 125
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
V++GTPGR+ DHI+RG + L +LKF VLDEADEMLRMGF+EDVE ++ + + +V
Sbjct: 126 AHVIVGTPGRVIDHIKRGTLKLDNLKFLVLDEADEMLRMGFIEDVEWVISQTPQSRQVA- 184
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P+ ++ I+ K+L S + +L + K + +R P S + + I+
Sbjct: 185 -LFSATMPAAIRKIAQKYLNSPQ---ELAVKNQSKTADTIRQRFWPVSGYHKLDALTRIL 240
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPGARA-----LHGDIQQSQREVTLAGFRSGKFMT 412
G I+F TK + +L++ L AR L GD+ Q+QRE T+ R GK
Sbjct: 241 EVEDFDG-MIVFVRTKVATVELSEKLE-ARGYNTAPLSGDVPQNQRERTVERLRQGKLDI 298
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVS 471
LVAT+VAARGLD+ + +I + P D EAY+HR GRTGRAG G A++ PR K +S
Sbjct: 299 LVATDVAARGLDVERISHVINYDMPYDPEAYVHRIGRTGRAGREGEAILFVTPREKRLLS 358
Query: 472 KIERESGVKFEHISAP 487
IER + + E + P
Sbjct: 359 SIERSTRQRIERMEMP 374
>gi|12652909|gb|AAH00210.1| DDX50 protein, partial [Homo sapiens]
Length = 467
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 133/287 (46%), Positives = 189/287 (65%), Gaps = 8/287 (2%)
Query: 249 KDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLP 305
KDH++ G +DLS L+ VLDE D+ML +GF E VE I+ K + + QTLLFSAT P
Sbjct: 1 KDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCP 60
Query: 306 SWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGG 364
WV ++ K++KS + +DLVG KA+T V H+ + C S R VI D+++ YS S G
Sbjct: 61 QWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEG 120
Query: 365 RTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421
R IIF ETK++ +++A + A+ LHGDI QSQRE+TL GFR G F LVATNVAAR
Sbjct: 121 RAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAAR 180
Query: 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVK 480
GLDI +V L+IQ PP+DVE+YIHRSGRTGRAG TG+ + Y PR + + +E+++G+
Sbjct: 181 GLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGIT 240
Query: 481 FEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSG 527
F+ + P D+ K+ ++A ++ VS + + F+ +A+ L+ G
Sbjct: 241 FKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKG 287
>gi|113954045|ref|YP_730263.1| superfamily II DNA/RNA helicase [Synechococcus sp. CC9311]
gi|113881396|gb|ABI46354.1| Superfamily II DNA/RNA helicase [Synechococcus sp. CC9311]
Length = 601
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 159/398 (39%), Positives = 231/398 (58%), Gaps = 22/398 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
E + P+ S F S L + L KG + PIQ ++ G DLVG+A+TG GKT AF
Sbjct: 43 EPKVPSGFSEFGFSEALLKTLADKGYKEPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAF 102
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY-GGAVGLTSCCLY 222
LP+LE L G PSVLVL PTRELA QV E F Y G L +Y
Sbjct: 103 ALPLLERLQ----------GDSPLPSVLVLAPTRELAMQVAEAFKAYSAGHPHLNVLAIY 152
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG+ + +Q L++G+DVV+GTPGR+ DH+ +G ++ S L+ VLDEADEMLRMGF++DV
Sbjct: 153 GGSDFRSQINALRRGVDVVVGTPGRVMDHMRQGTLNTSGLRSLVLDEADEMLRMGFIDDV 212
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E IL ++ + Q +LFSAT+P+ ++ +S ++L ++ ++ K K + +RH +
Sbjct: 213 EWILEQL--PQERQVVLFSATMPNEIRRLSKRYL---REPAEITIKTKDKEARRIRHRCI 267
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQR 398
+S + + + ++ + G IIF TK +A+ L A L+GD+ Q+QR
Sbjct: 268 TMQNSHKLEALNRVLEAVTGEG-VIIFARTKAITLTVAESLEAAGHDVAVLNGDVPQNQR 326
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E T+ R G LVAT+VAARGLD++ + L+I + P D EAY+HR GRTGRAG +G
Sbjct: 327 ERTVERLRKGTVNILVATDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRSGD 386
Query: 459 AVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKA 495
A++ PR + V +ER G E + P A+I ++
Sbjct: 387 AILFITPRERRFVGNLERAVGQAIEPMDIPSNAEINQS 424
>gi|33240544|ref|NP_875486.1| superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33238072|gb|AAQ00139.1| Superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 603
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 157/391 (40%), Positives = 230/391 (58%), Gaps = 24/391 (6%)
Query: 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
N F S L + LK+KG E PIQ + ++ G DL+G+A+TG GKT AF LP+L
Sbjct: 51 NGFEGFGFSEALLKTLKNKGYEEPTPIQKASIPELMLGRDLLGQAQTGTGKTAAFALPLL 110
Query: 169 ESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPY 227
E + SK+ R P VLVL PTRELA QV E F Y G + +YGG+ +
Sbjct: 111 ERIN------SKE----RNPQVLVLTPTRELAMQVAESFKAYSEGHANINILAVYGGSDF 160
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
+Q + LK+G+++++GTPGR+ DHI +G ++ SL+ VLDEADEMLRMGF++D+E IL
Sbjct: 161 RSQIYSLKRGVEIIVGTPGRVMDHIRQGTLNQDSLQCLVLDEADEMLRMGFIDDIEWILE 220
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
++ N+ Q +LFSAT+P ++ +S ++L+ D I + K K + +R + +S
Sbjct: 221 QL--PNERQMVLFSATMPPEIRKLSKRYLR-DPAEITIKA--KKKEAQLIRQHYITVQNS 275
Query: 348 ARSQVIPDIIRC-YSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTL 402
+ +V+ ++ Y G IIF TK +LA+ L + L+GD+ Q+ RE T+
Sbjct: 276 YKLEVLRRVLELNYGEG--VIIFARTKAITLKLAESLEASNHNVAVLNGDVPQNLRERTV 333
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
R G LVAT+VAARGLD+ + L+I + P D EAY+HR GRTGRAG +G A++
Sbjct: 334 ERLRQGGINILVATDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRSGEAILF 393
Query: 463 YDPR-KSSVSKIERESGVKFEHISAPQPADI 492
PR +S ++ +ER G E + P I
Sbjct: 394 ISPRERSYLNNLERAVGQSIERMEIPNNESI 424
>gi|395760255|ref|ZP_10440924.1| cold-shock DeaD box ATP-dependent RNA helicase (partial match)
[Janthinobacterium lividum PAMC 25724]
Length = 716
Score = 268 bits (686), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 174/439 (39%), Positives = 246/439 (56%), Gaps = 30/439 (6%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S +S PL LK G E+ PIQA T ++L D++G+A+TG GKT AF LPIL +
Sbjct: 10 SDLNLSEPLIRALKDVGYETPSPIQAATIPLLLANRDVLGQAQTGTGKTAAFALPILSRI 69
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQ 230
K S +P LVL PTRELA QV E F VY + G +YGG Y Q
Sbjct: 70 D---LKQS-------SPQALVLAPTRELAIQVAEAFQVYAAHIPGFHVLPIYGGQSYGPQ 119
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
L++G+ V++GTPGR+ DH+++G++DLS LK VLDEADEMLRMGF++DVE IL +
Sbjct: 120 LSALRRGVHVIVGTPGRVIDHLDKGSLDLSKLKTLVLDEADEMLRMGFIDDVERILQETP 179
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
+ + QT LFSAT+PS +K I+T +L + ++ K + N+R S +
Sbjct: 180 EGH--QTALFSATMPSVIKRIATTYLINPA---EVTVAAKTGTADNIRQRYWLVSGMHKL 234
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFR 406
+ I+ + G IIF TK +LA L A A++GDIQQ+QRE T+ +
Sbjct: 235 DALTRILEAEAFDG-MIIFARTKLGTEELAGKLQARGFSAAAINGDIQQAQRERTIQQLK 293
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
GK LVAT+VAARGLD+ + ++ + P D E+Y HR GRTGRAG +G A++ PR
Sbjct: 294 DGKIDILVATDVAARGLDVERISHVVNYDVPHDPESYTHRIGRTGRAGRSGEAILFITPR 353
Query: 467 KSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSV----IPAFKSAAEE 521
+ ++ K IER + + P I V A+ Q+S+++ + F+S E+
Sbjct: 354 EKNLLKAIERSTRQPISMLELPT---IQAVNDVRIAKFKEQISETLALGELEQFQSLIED 410
Query: 522 LLNNSGLSAAELLAKALAK 540
+ A E +A ALAK
Sbjct: 411 FEREQNIPAIE-IAAALAK 428
>gi|392953714|ref|ZP_10319268.1| putative cold-shock DeaD box ATP-dependent RNA helicase
[Hydrocarboniphaga effusa AP103]
gi|391859229|gb|EIT69758.1| putative cold-shock DeaD box ATP-dependent RNA helicase
[Hydrocarboniphaga effusa AP103]
Length = 611
Score = 268 bits (686), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 156/381 (40%), Positives = 225/381 (59%), Gaps = 24/381 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
+++ P+ E L G ES PIQA T +L+G D++G+A+TG GKT AF LPIL L
Sbjct: 21 LQLAAPVLEALSRVGYESPSPIQARTIPPLLEGRDVLGQAQTGTGKTAAFALPILSKLD- 79
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEF 232
K S +P L+L PTRELA QV E Y + G +YGG Y Q
Sbjct: 80 --LKQS-------SPQALILAPTRELAIQVAEALQTYAACMPGFHVLPIYGGQSYEPQLR 130
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
LK+G VV+GTPGR+ DHI+RG++ L L+ VLDEADEMLRMGF+EDVE +L +
Sbjct: 131 GLKRGAHVVVGTPGRVVDHIKRGSLKLEGLRHFVLDEADEMLRMGFIEDVEWVLQQA--P 188
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ Q LFSAT+PS ++ ++T +L+ + +++ K +TN+R S + +
Sbjct: 189 AERQIALFSATMPSQIRRVATTYLR---EPVEISIKAKTTTATNIRQRYWMVSGMNKIEA 245
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGDIQQSQREVTLAGFRS 407
+ + + I+F TK + ++LAD L GAR AL+GD+QQ+ RE T+A +
Sbjct: 246 LTRFLEAETFDA-MIVFARTKAATTELADKL-GARGFSAAALNGDMQQNDRERTIAKLKD 303
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK 467
G+ +VAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+
Sbjct: 304 GQLDIVVATDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAILFVSPRE 363
Query: 468 SSVSK-IERESGVKFEHISAP 487
+ K IER + E I+AP
Sbjct: 364 RHLLKAIERATRQPIEAIAAP 384
>gi|440731079|ref|ZP_20911124.1| ATP-dependent RNA helicase (cold-shock dead box protein), partial
[Xanthomonas translucens DAR61454]
gi|440375088|gb|ELQ11802.1| ATP-dependent RNA helicase (cold-shock dead box protein), partial
[Xanthomonas translucens DAR61454]
Length = 653
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 158/366 (43%), Positives = 208/366 (56%), Gaps = 22/366 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES PIQA T +L G DL+G+A+TG GKT AF LPIL L R
Sbjct: 28 GYESPSPIQAATIPALLTGRDLLGQAQTGTGKTAAFALPILSRLDFN----------QRK 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV E F Y A+ G +YGG PY Q LK+G+ VV+GTPG
Sbjct: 78 PQALVLAPTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQPYVQQLSALKRGVHVVVGTPG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+ERG +DLS L+ VLDEADEMLRMGF++DVE +L K+ + +V LFSAT+P+
Sbjct: 138 RVIDHLERGTLDLSELRTLVLDEADEMLRMGFIDDVEAVLKKLPASRQVA--LFSATMPT 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+K I+ +L + I K S N+R S + + I+
Sbjct: 196 AIKRIAQTYLNDPAEVII---ASKTTTSANIRQRYWAVSGLHKLDALTRILEVEPFDA-M 251
Query: 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK + +LA L A A++GDIQQSQRE + + GK LVAT+VAARG
Sbjct: 252 IVFARTKAATDELAQKLQARGLAAAAINGDIQQSQRERVIQQLKDGKLDILVATDVAARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKF 481
LD+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR K + IER +
Sbjct: 312 LDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPREKGMLRAIERATRQPI 371
Query: 482 EHISAP 487
E + P
Sbjct: 372 EEMQLP 377
>gi|422324246|ref|ZP_16405283.1| hypothetical protein HMPREF0737_00393 [Rothia mucilaginosa M508]
gi|353344302|gb|EHB88614.1| hypothetical protein HMPREF0737_00393 [Rothia mucilaginosa M508]
Length = 752
Score = 267 bits (683), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 165/422 (39%), Positives = 237/422 (56%), Gaps = 16/422 (3%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L+ G E PIQ T ++LDG D+VG A+TG GKT AF LP L + + + G
Sbjct: 95 LEEVGYEKPSPIQEQTIPLLLDGHDVVGLAQTGTGKTAAFALPALSRMA----ELADING 150
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
R VLVL PTRELA QV E F Y + T +YGG+PY Q L++G VV+
Sbjct: 151 VSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRRGAQVVV 210
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+E+G++DLS+L++ VLDEADEMLRMGF EDVE IL D+ +V LFSA
Sbjct: 211 GTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTPDSKQVA--LFSA 268
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ I+ ++L +++ K S N+ + S + + ++ +
Sbjct: 269 TMPNSIRKIAQQYLND---PVEVRVKAKTTTSANISQRYMQVMHSHKLDAMTRVLEVENY 325
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G I+F TK+ ++AD L A A++GDI Q RE T+ R G+ LVAT+V
Sbjct: 326 DG-IIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDILVATDV 384
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERES 477
AARGLD+ + L++ + P D E+Y+HR GRTGRAG G A++ PR K + +IE+ +
Sbjct: 385 AARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFVTPREKYMLRQIEKAT 444
Query: 478 GVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKA 537
K E + P + + A+ IT+ +S +F E N + AE +A A
Sbjct: 445 RQKVEPMHMPTAEAVNETRKQRFAQQITETIESEDLSFFRQIIEDYENEHDTTAEDIAAA 504
Query: 538 LA 539
LA
Sbjct: 505 LA 506
>gi|380512805|ref|ZP_09856212.1| ATP-dependent RNA helicase (cold-shock dead box protein), partial
[Xanthomonas sacchari NCPPB 4393]
Length = 480
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 157/366 (42%), Positives = 208/366 (56%), Gaps = 22/366 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES PIQA T +L G DL+G+A+TG GKT AF LPIL L R
Sbjct: 8 GYESPSPIQAATIPALLTGRDLLGQAQTGTGKTAAFALPILSRLDFA----------QRK 57
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV E F Y A+ G +YGG PY Q LK+G+ VV+GTPG
Sbjct: 58 PQALVLAPTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQPYVQQLSALKRGVHVVVGTPG 117
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH++RG +DLS LK VLDEADEMLRMGF++DVE +L K+ ++ +V LFSAT+P
Sbjct: 118 RVIDHLDRGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPESRQVA--LFSATMPP 175
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+K I+ +L + I K S N+R S + + I+
Sbjct: 176 AIKRIAQTYLNDPAEVII---ASKTTTSANIRQRYWAVSGLHKLDALTRILEVEPFDA-M 231
Query: 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK +LA L A A++GDIQQ+QRE + + GK LVAT+VAARG
Sbjct: 232 IIFARTKAGTDELAQKLQARGLAAAAINGDIQQAQRERVIQQLKDGKLDVLVATDVAARG 291
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKF 481
LD+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + + IER +
Sbjct: 292 LDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLRAIERATRQPI 351
Query: 482 EHISAP 487
E + P
Sbjct: 352 EEMQLP 357
>gi|408824960|ref|ZP_11209850.1| DEAD/DEAH box helicase [Pseudomonas geniculata N1]
Length = 648
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 164/431 (38%), Positives = 238/431 (55%), Gaps = 37/431 (8%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
+S+ P ++ +S P+ + + + G E+ PIQA T +L+G D++G+A+TG GKT AF
Sbjct: 4 DSQAPLQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L ++ K P L+L PTRELA QV E F Y + G +Y
Sbjct: 64 ALPVLSNIDLQQIK----------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q L++G+ +V+GTPGR+ DH++R +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYGQQLSALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + +V LFSAT+P ++ I+ +L+ +++ K S N+R
Sbjct: 174 EAVLKKLPEQRQVA--LFSATMPPQIRRIAQTYLQD---PVEVTIAAKTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ IIF TK +LA L A A++GD+QQ+QR
Sbjct: 229 WVSGMHKLDALTRILEVEPFDA-MIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG +G
Sbjct: 288 ERTIAMLKEGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGE 347
Query: 459 AVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKS 517
A++ PR K + +IER + E + P VEA V+D+ I F S
Sbjct: 348 AILFATPREKGMLRQIERATRQPIEEMQLP---------SVEA------VNDTRINKFTS 392
Query: 518 AAEELLNNSGL 528
E L GL
Sbjct: 393 RISETLGAGGL 403
>gi|297565173|ref|YP_003684145.1| DEAD/DEAH box helicase [Meiothermus silvanus DSM 9946]
gi|296849622|gb|ADH62637.1| DEAD/DEAH box helicase domain protein [Meiothermus silvanus DSM
9946]
Length = 538
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 166/445 (37%), Positives = 245/445 (55%), Gaps = 30/445 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI---LESLTNGPTKASK 180
L++KG + IQA + L+G D++G+ARTG GKTLAF LPI LE+ G ++ +
Sbjct: 16 LEAKGFTTPTAIQAQAIPLALEGRDVLGQARTGTGKTLAFALPIAHKLEAPFRGDSRVAS 75
Query: 181 KTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDV 240
+ GR P +L PTRELA QV + A L +YGG Y +Q L++G DV
Sbjct: 76 RQ-RGRPPRAFILTPTRELALQVAGELAWV--APHLHVLPIYGGTGYGSQAEGLRRGADV 132
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+ TPGR D++ +G +DLS ++ VLDEADEML MGF EDVE +LG + QT LF
Sbjct: 133 VVATPGRAIDYLNQGILDLSHVEIAVLDEADEMLSMGFEEDVEKLLGATPASR--QTFLF 190
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+PSW K ++ ++++ D +++V +E++ + + L R + D+I Y
Sbjct: 191 SATVPSWAKRLAERYMR-DPVHVNVVKDEQV----SYEELALQAPLQTRLNTLTDVIFAY 245
Query: 361 SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
+ RTI+FT TK +LA L GA +HGD+ Q +RE L FR G LVAT
Sbjct: 246 APE-RTIVFTRTKAEVDELATGLQARGIGAAPIHGDMSQRERERVLGRFREGTDTVLVAT 304
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIER 475
+VAARGLDI +V L++ P E Y HRSGRTGRAG +G ++ Y PR + + +E
Sbjct: 305 DVAARGLDIPEVDLVVHFRLPEKAEPYQHRSGRTGRAGRSGRVILFYGPRERRELENLEY 364
Query: 476 ESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLA 535
+F+ ++ P P ++ +A + + ++ A+ L+N+ E +A
Sbjct: 365 AVKRRFKRVNPPTPEEVQEAKWQRLLARLAKQPPHERAPWRELADRLVNDR-----EAIA 419
Query: 536 KALAKAVVSAFLFSSSSNSLSLTSG 560
L AF+ + S SL +G
Sbjct: 420 GLL------AFMLGTVSAPKSLITG 438
>gi|87124726|ref|ZP_01080574.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9917]
gi|86167605|gb|EAQ68864.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9917]
Length = 603
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 156/389 (40%), Positives = 228/389 (58%), Gaps = 24/389 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT- 172
F S L L SKG ++ PIQ F ++ G DLVG+A+TG GKT AF LP+LE L
Sbjct: 48 FGFSEALLRTLASKGYQAPSPIQRAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLQP 107
Query: 173 NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPYHAQE 231
GP P VLVL PTRELA QV E F Y G L +YGG+ + +Q
Sbjct: 108 EGP-----------GPQVLVLAPTRELAMQVAESFKAYAAGHPHLNVLAIYGGSDFRSQI 156
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
LK+G+DVV+GTPGR+ DH+ +G ++ S L+ VLDEADEMLRMGF++DVE IL ++ +
Sbjct: 157 HSLKRGVDVVVGTPGRVMDHMRQGTLNTSHLRSLVLDEADEMLRMGFIDDVEWILDQLPE 216
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
+V +LFSAT+P+ ++ +S ++L ++ ++ + K + +R + +S + +
Sbjct: 217 ERQV--VLFSATMPAEIRRLSKRYL---REPAEITIKTQEKEARRIRQRCITLQNSHKLE 271
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRS 407
+ ++ + G IIF TK +++ L L+GD+ Q+QRE T+ R
Sbjct: 272 ALNRVLEAVTGEG-VIIFARTKAITLTVSENLEATGHDVAVLNGDVPQNQRERTVERLRK 330
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR- 466
G LVAT+VAARGLD+ + L+I + P D EAY+HR GRTGRAG +G A++ PR
Sbjct: 331 GTVNILVATDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRSGEAILFVTPRE 390
Query: 467 KSSVSKIERESGVKFEHISAPQPADIAKA 495
+ V+ +ER +G E + P A+I +A
Sbjct: 391 RRFVNNLERATGQPIEPMQIPSNAEINQA 419
>gi|283457475|ref|YP_003362053.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
gi|283133468|dbj|BAI64233.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
Length = 732
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 165/422 (39%), Positives = 240/422 (56%), Gaps = 16/422 (3%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L+ G E PIQ T ++L+G D+VG A+TG GKT AF LP L + + + G
Sbjct: 76 LEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTAAFALPALSRMA----ELADING 131
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
R VLVL PTRELA QV E F Y + T +YGG+PY Q L++G VV+
Sbjct: 132 VSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRRGAQVVV 191
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+E+G++DLS+L++ VLDEADEMLRMGF EDVE IL D+ +V LFSA
Sbjct: 192 GTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTPDSKQV--ALFSA 249
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ I+ ++L +D + + + K S+N+ + S + + ++ +
Sbjct: 250 TMPNSIRKIAQQYL-NDPREVRV--KAKTTTSSNISQRYMQVMHSHKLDAMTRVLEVENY 306
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G I+F TK+ ++AD L A A++GDI Q RE T+ R G+ LVAT+V
Sbjct: 307 DG-IIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDILVATDV 365
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERES 477
AARGLD+ + L++ + P D E+Y+HR GRTGRAG G A++ PR K + +IE+ +
Sbjct: 366 AARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFVTPREKYMLRQIEKAT 425
Query: 478 GVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKA 537
K E + P + + A+ IT+ +S +F E N + AE +A A
Sbjct: 426 RQKVEPMHMPTAEAVNETRKQRFAQQITETIESEDLSFFRQIIEDYENEHDTTAEDIAAA 485
Query: 538 LA 539
LA
Sbjct: 486 LA 487
>gi|386717711|ref|YP_006184037.1| cold-shock DEAD-box protein A [Stenotrophomonas maltophilia D457]
gi|384077273|emb|CCH11859.1| Cold-shock DEAD-box protein A [Stenotrophomonas maltophilia D457]
Length = 651
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 164/431 (38%), Positives = 238/431 (55%), Gaps = 37/431 (8%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
+S+ P ++ +S P+ + + + G E+ PIQA T +L+G D++G+A+TG GKT AF
Sbjct: 10 DSQAPLQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAF 69
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L ++ K P L+L PTRELA QV E F Y + G +Y
Sbjct: 70 ALPVLSNIDLQQIK----------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVY 119
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q L++G+ +V+GTPGR+ DH++R +DLS LK VLDEADEMLRMGF++DV
Sbjct: 120 GGQPYGQQLSALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDV 179
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + +V LFSAT+P ++ I+ +L+ +++ K S N+R
Sbjct: 180 EAVLKKLPEQRQVA--LFSATMPPQIRRIAQTYLQD---PVEVTIAAKTTTSANIRQRYW 234
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ IIF TK +LA L A A++GD+QQ+QR
Sbjct: 235 WVSGMHKLDALTRILEVEPFDA-MIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQR 293
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG +G
Sbjct: 294 ERTIAMLKEGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGE 353
Query: 459 AVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKS 517
A++ PR K + +IER + E + P VEA V+D+ I F S
Sbjct: 354 AILFATPREKGMLRQIERATRQPIEEMQLP---------SVEA------VNDTRINKFTS 398
Query: 518 AAEELLNNSGL 528
E L GL
Sbjct: 399 RISETLGAGGL 409
>gi|325920710|ref|ZP_08182616.1| ATP-dependent RNA helicase CsdA [Xanthomonas gardneri ATCC 19865]
gi|325548762|gb|EGD19710.1| ATP-dependent RNA helicase CsdA [Xanthomonas gardneri ATCC 19865]
Length = 643
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 163/390 (41%), Positives = 220/390 (56%), Gaps = 22/390 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G ES PIQA T +L G D++G+A+TG GKT AF
Sbjct: 4 ESSAPLLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 64 ALPVLSNADLNQLK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + K Q LFSAT+P ++ I+ +LK D + + K S N+R
Sbjct: 174 EAVLKKLPE--KRQVALFSATMPPAIRRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK +LA L A A++GD+QQ+ R
Sbjct: 229 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E T+A + GK LVAT+VAARGLD+ V ++ + P D E+Y+HR GRTGRAG TG
Sbjct: 288 EKTIAQLKDGKLDILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRTGD 347
Query: 459 AVMLYDPR-KSSVSKIERESGVKFEHISAP 487
A++ PR K + IER + E + P
Sbjct: 348 AILFVTPREKGMLRSIERATRQPIEEMQLP 377
>gi|344206631|ref|YP_004791772.1| DEAD/DEAH box helicase [Stenotrophomonas maltophilia JV3]
gi|343777993|gb|AEM50546.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
JV3]
Length = 648
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 164/431 (38%), Positives = 238/431 (55%), Gaps = 37/431 (8%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
+S+ P ++ +S P+ + + + G E+ PIQA T +L+G D++G+A+TG GKT AF
Sbjct: 4 DSQAPLQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L ++ K P L+L PTRELA QV E F Y + G +Y
Sbjct: 64 ALPVLSNIDLQQIK----------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q L++G+ +V+GTPGR+ DH++R +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYGQQLSALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + +V LFSAT+P ++ I+ +L+ +++ K S N+R
Sbjct: 174 EAVLKKLPEQRQVA--LFSATMPPQIRRIAQTYLQD---PVEVTIAAKTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ IIF TK +LA L A A++GD+QQ+QR
Sbjct: 229 WVSGMHKLDALTRILEVEPFDA-MIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG +G
Sbjct: 288 ERTIAMLKEGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGE 347
Query: 459 AVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKS 517
A++ PR K + +IER + E + P VEA V+D+ I F S
Sbjct: 348 AILFATPREKGMLRQIERATRQPIEEMQLP---------SVEA------VNDTRINKFTS 392
Query: 518 AAEELLNNSGL 528
E L GL
Sbjct: 393 RISETLGAGGL 403
>gi|148239847|ref|YP_001225234.1| superfamily II DNA/RNA helicase [Synechococcus sp. WH 7803]
gi|147848386|emb|CAK23937.1| Superfamily II DNA/RNA helicase [Synechococcus sp. WH 7803]
Length = 606
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 173/472 (36%), Positives = 258/472 (54%), Gaps = 27/472 (5%)
Query: 94 EAGVEEQERGES-EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
+A E GES E + + F S L + L +KG + PIQ F ++ G DLVG+
Sbjct: 41 DADSEATSEGESAESASGFAGFGFSEALLKTLDAKGYKEPSPIQKAAFPELMLGRDLVGQ 100
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG- 211
A+TG GKT AF LP+LE L G P VLVL PTRELA QV + F Y
Sbjct: 101 AQTGTGKTAAFALPLLERLD----------GRSNTPRVLVLAPTRELAMQVADSFKAYAA 150
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
G L +YGG+ + +Q LK+G+DVV+GTPGR+ DH+ +G +D + L+ VLDEAD
Sbjct: 151 GHPHLNVLAIYGGSDFRSQIHALKRGVDVVVGTPGRVMDHMRQGTLDTTGLRSLVLDEAD 210
Query: 272 EMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKM 331
EMLRMGF++DVE IL ++ + +V +LFSAT+P+ ++ +S ++L ++ ++ K
Sbjct: 211 EMLRMGFIDDVEWILDQLPEERQV--VLFSATMPNEIRRLSKRYL---REPAEITIKTKD 265
Query: 332 KASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA----R 387
+ + +R + ++ + + + ++ + G IIF TK +A+ L A
Sbjct: 266 REAKRIRQRSITLQNAHKIEALNRVLEAVTGEG-VIIFARTKAITLTVAESLEAAGHDVA 324
Query: 388 ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRS 447
L+GD+ Q+QRE T+ R G LVAT+VAARGLD++ + L+I + P D EAY+HR
Sbjct: 325 VLNGDVPQNQRERTVDRLRKGTVNILVATDVAARGLDVDRIGLVINYDMPFDSEAYVHRI 384
Query: 448 GRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQ 506
GRTGRAG TG A++ PR + V +ER E + P A+I ++ + ++Q
Sbjct: 385 GRTGRAGRTGEAILFVTPRERRFVGNLERAVNQSIEPMDIPSNAEINQSRLDRLRDRLSQ 444
Query: 507 VSDSVIPAFKSAAEELLNNSG----LSAAELLAKALAKAVVSAFLFSSSSNS 554
+ S +EL+ G L+A +L A+ AV L S S
Sbjct: 445 AAACEANDETSLLQELIQRVGQEHELTADQLALAAMKLAVGDQPLLVSGDES 496
>gi|239918236|ref|YP_002957794.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
gi|239839443|gb|ACS31240.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
Length = 731
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 162/386 (41%), Positives = 223/386 (57%), Gaps = 16/386 (4%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G + PIQ T ++L G D+VG A+TG GKT AF LP L L +AS G A
Sbjct: 91 GYTAPSPIQEATIPLLLAGRDVVGLAQTGTGKTGAFALPALSRLA----EASDVNGRANA 146
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC-CLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P +L L PTRELA Q+ E FD Y +G S +YGG+PY Q L++G VV+GTPG
Sbjct: 147 PQILALAPTRELALQLAEAFDAYAKHLGDVSVLAVYGGSPYGPQLSALRRGAQVVVGTPG 206
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHIERG++DLS L+ VLDEADEMLRMGF E+V+ IL A+K QT LFSAT+P
Sbjct: 207 RVIDHIERGSLDLSQLQTLVLDEADEMLRMGFAEEVDRILASTP-ASK-QTALFSATMPP 264
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ IS ++L S + ++ + + S +R L + + + I+ G
Sbjct: 265 AIRRISAQYLNSPE---EVAVSRQSTTSATIRQRYLQVGHQYKLEAMTRILETEDHEG-V 320
Query: 367 IIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I F T+ +LA L A A+ GDI Q QRE T+ ++G+ LVAT+VAARG
Sbjct: 321 IAFVRTRAGTEELAQKLTRAGFKAVAISGDIAQKQREKTVEDLKTGRVDILVATDVAARG 380
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKF 481
LD+ + +I + P+D E+Y+HR GRTGRAG G AV+ PR+ + K IER + +
Sbjct: 381 LDVERISHVINYDIPQDAESYVHRIGRTGRAGRQGDAVLFMTPRERFLLKQIERTTRQQV 440
Query: 482 EHISAPQPADIAKAAGVEAAETITQV 507
E ++ P AD+ A A+ IT+
Sbjct: 441 EEMAVPSVADVNAARKRRFADGITRT 466
>gi|254521627|ref|ZP_05133682.1| ATP-dependent RNA helicase DeaD [Stenotrophomonas sp. SKA14]
gi|219719218|gb|EED37743.1| ATP-dependent RNA helicase DeaD [Stenotrophomonas sp. SKA14]
Length = 648
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 163/431 (37%), Positives = 238/431 (55%), Gaps = 37/431 (8%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
+S+ P ++ +S P+ + + + G E+ PIQA T +L+G D++G+A+TG GKT AF
Sbjct: 4 DSQAPLQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L ++ K P L+L PTRELA QV E F Y + G +Y
Sbjct: 64 ALPVLSNIDLQQIK----------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q L++G+ +V+GTPGR+ DH++R +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYGQQLSALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + +V LFSAT+P ++ I+ +L+ +++ K S N+R
Sbjct: 174 EAVLKKLPEQRQVA--LFSATMPPQIRRIAQTYLQD---PVEVTIAAKTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ IIF TK +LA L A A++GD+QQ+QR
Sbjct: 229 WVSGMHKLDALTRILEVEPFDA-MIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG +G
Sbjct: 288 ERTIAMLKEGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGE 347
Query: 459 AVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKS 517
A++ PR K + +IER + E + P VEA V+D+ I F +
Sbjct: 348 AILFATPREKGMLRQIERATRQPIEEMQLP---------SVEA------VNDTRINKFTT 392
Query: 518 AAEELLNNSGL 528
E L GL
Sbjct: 393 RITETLGAGGL 403
>gi|285018817|ref|YP_003376528.1| ATP-dependent RNA helicase (cold-shock dead box protein)
[Xanthomonas albilineans GPE PC73]
gi|283474035|emb|CBA16536.1| probable atp-dependent rna helicase (cold-shock dead box protein)
[Xanthomonas albilineans GPE PC73]
Length = 657
Score = 265 bits (678), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 157/366 (42%), Positives = 208/366 (56%), Gaps = 22/366 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES PIQA T +L G DL+G+A+TG GKT AF LPIL L R
Sbjct: 28 GYESPSPIQAATIPALLTGRDLLGQAQTGTGKTAAFALPILSRLDFA----------QRK 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV E F Y A+ G +YGG PY Q LK+G+ VV+GTPG
Sbjct: 78 PQALVLAPTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQPYVQQLSALKRGVHVVVGTPG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH++RG +DLS LK VLDEADEMLRMGF++DVE +L K+ + +V LFSAT+P+
Sbjct: 138 RVIDHLDRGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPQSRQVA--LFSATMPA 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+K I+ +L + I K S N+R S + + I+
Sbjct: 196 AIKRIAQTYLNDPAEVII---ASKTTTSANIRQRYWAVSGLHKLDALTRILEVEPFDA-M 251
Query: 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK +LA L A A++GDIQQ+QRE + + GK LVAT+VAARG
Sbjct: 252 IIFARTKAGTDELAQKLQARGLAAAAINGDIQQAQRERVIQQLKDGKLDILVATDVAARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKF 481
LD+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + + IER +
Sbjct: 312 LDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLRAIERATRQPI 371
Query: 482 EHISAP 487
E + P
Sbjct: 372 EEMQLP 377
>gi|456733812|gb|EMF58634.1| Cold-shock DEAD-box protein A [Stenotrophomonas maltophilia EPM1]
Length = 648
Score = 265 bits (678), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 163/431 (37%), Positives = 238/431 (55%), Gaps = 37/431 (8%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
+S+ P ++ +S P+ + + + G E+ PIQA T +L+G D++G+A+TG GKT AF
Sbjct: 4 DSQAPLQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L ++ K P L+L PTRELA QV E F Y + G +Y
Sbjct: 64 ALPVLSNIDLQQIK----------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q L++G+ +V+GTPGR+ DH++R +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYGQQLSALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + +V LFSAT+P ++ I+ +L+ +++ K S N+R
Sbjct: 174 EAVLKKLPEQRQVA--LFSATMPPQIRRIAQTYLQD---PVEVTIAAKTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ IIF TK +LA L A A++GD+QQ+QR
Sbjct: 229 WVSGMHKLDALTRILEVEPFDA-MIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG +G
Sbjct: 288 ERTIAMLKEGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGE 347
Query: 459 AVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKS 517
A++ PR K + +IER + E + P VEA V+D+ I F +
Sbjct: 348 AILFATPREKGMLRQIERATRQPIEEMQLP---------SVEA------VNDNRINKFTT 392
Query: 518 AAEELLNNSGL 528
E L GL
Sbjct: 393 RITETLGAGGL 403
>gi|424667727|ref|ZP_18104752.1| hypothetical protein A1OC_01305 [Stenotrophomonas maltophilia
Ab55555]
gi|401067989|gb|EJP76513.1| hypothetical protein A1OC_01305 [Stenotrophomonas maltophilia
Ab55555]
Length = 648
Score = 265 bits (678), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 163/431 (37%), Positives = 238/431 (55%), Gaps = 37/431 (8%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
+S+ P ++ +S P+ + + + G E+ PIQA T +L+G D++G+A+TG GKT AF
Sbjct: 4 DSQAPLQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L ++ K P L+L PTRELA QV E F Y + G +Y
Sbjct: 64 ALPVLSNIDLQQIK----------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q L++G+ +V+GTPGR+ DH++R +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYGQQLSALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + +V LFSAT+P ++ I+ +L+ +++ K S N+R
Sbjct: 174 EAVLKKLPEQRQVA--LFSATMPPQIRRIAQTYLQD---PVEVTIAAKTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ IIF TK +LA L A A++GD+QQ+QR
Sbjct: 229 WVSGMHKLDALTRILEVEPFDA-MIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG +G
Sbjct: 288 ERTIAMLKEGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGE 347
Query: 459 AVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKS 517
A++ PR K + +IER + E + P VEA V+D+ I F +
Sbjct: 348 AILFATPREKGMLRQIERATRQPIEEMQLP---------SVEA------VNDNRINKFTT 392
Query: 518 AAEELLNNSGL 528
E L GL
Sbjct: 393 RISETLGAGGL 403
>gi|190573462|ref|YP_001971307.1| DEAD/DEAH box helicase [Stenotrophomonas maltophilia K279a]
gi|190011384|emb|CAQ44999.1| putative DEAD-box helicase [Stenotrophomonas maltophilia K279a]
Length = 654
Score = 265 bits (678), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 163/431 (37%), Positives = 238/431 (55%), Gaps = 37/431 (8%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
+S+ P ++ +S P+ + + + G E+ PIQA T +L+G D++G+A+TG GKT AF
Sbjct: 4 DSQAPLQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L ++ K P L+L PTRELA QV E F Y + G +Y
Sbjct: 64 ALPVLSNIDLQQIK----------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q L++G+ +V+GTPGR+ DH++R +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYGQQLSALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + +V LFSAT+P ++ I+ +L+ +++ K S N+R
Sbjct: 174 EAVLKKLPEQRQVA--LFSATMPPQIRRIAQTYLQD---PVEVTIAAKTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ IIF TK +LA L A A++GD+QQ+QR
Sbjct: 229 WVSGMHKLDALTRILEVEPFDA-MIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG +G
Sbjct: 288 ERTIAMLKEGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGE 347
Query: 459 AVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKS 517
A++ PR K + +IER + E + P VEA V+D+ I F +
Sbjct: 348 AILFATPREKGMLRQIERATRQPIEEMQLP---------SVEA------VNDNRINKFTT 392
Query: 518 AAEELLNNSGL 528
E L GL
Sbjct: 393 RITETLGAGGL 403
>gi|323358213|ref|YP_004224609.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
StLB037]
gi|323274584|dbj|BAJ74729.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
StLB037]
Length = 585
Score = 265 bits (677), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 162/402 (40%), Positives = 230/402 (57%), Gaps = 29/402 (7%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
LK G E+ IQA T ++L G D+VG A+TG GKT AF LP+L + +TG
Sbjct: 34 LKDVGYETPSAIQAATIPVLLQGRDVVGLAQTGTGKTAAFALPVLSQM---------ETG 84
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
+ + P LVL PTRELA QV E F+ Y + G++ +YGG Y Q L++G+DV++
Sbjct: 85 H-KNPQALVLAPTRELALQVCEAFEKYAAHIKGVSVLPVYGGQGYGQQLSALRRGVDVIV 143
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGRI DH+++G +DLS LKF VLDEADEML+MGF EDVE IL +V LFSA
Sbjct: 144 GTPGRIMDHLDKGTLDLSELKFLVLDEADEMLKMGFAEDVETILADTPSTKQVA--LFSA 201
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ IS ++L +D + I + K S N+ L S + + I+ +
Sbjct: 202 TMPAQIRRISAQYL-NDPEEITV--KTKTTTSANITQRYLIVSYQQKIDALTRILEVENF 258
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G I+FT TK +A+ L A A++GDI Q QRE T+ +SGK LVAT+V
Sbjct: 259 EG-MIVFTRTKNETETVAEKLRARGYTAAAINGDIAQVQRERTVNQLKSGKLDILVATDV 317
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERES 477
AARGLD+ + ++ + P D E+Y+HR GRTGRAG TG A+ PR + ++ IE+ +
Sbjct: 318 AARGLDVERISHVVNYDLPIDTESYVHRIGRTGRAGRTGDAISFVTPRERRMLTAIEKAT 377
Query: 478 GVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAA 519
+S P D+ A +T+ D++ A + A
Sbjct: 378 RQPLTEMSLPSVDDV-------NATRLTRFDDAITTALEDTA 412
>gi|255326780|ref|ZP_05367856.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
gi|255295997|gb|EET75338.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
Length = 744
Score = 265 bits (677), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 166/422 (39%), Positives = 238/422 (56%), Gaps = 16/422 (3%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L+ G E PIQ T ++L+G D+VG A+TG GKT AF LP L + + + G
Sbjct: 81 LEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTAAFALPALSRMA----ELADVNG 136
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
R VLVL PTRELA QV E F Y + T +YGG+PY Q L++G VV+
Sbjct: 137 ISRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRRGAQVVV 196
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+E+G++DLS+L++ VLDEADEMLRMGF EDVE IL D+ +V LFSA
Sbjct: 197 GTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTPDSKQVA--LFSA 254
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ I+ ++L +D I + K S N+ + S + + ++ +
Sbjct: 255 TMPNSIRKIAQQYL-NDPTEIRV--KAKTTTSANISQRYMQVMHSHKLDAMTRVLEVENY 311
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G I+F TK+ ++AD L A A++GDI Q RE T+ R G+ LVAT+V
Sbjct: 312 DG-IIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDILVATDV 370
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERES 477
AARGLD+ + L++ + P D E+Y+HR GRTGRAG G A++ PR K + +IE+ +
Sbjct: 371 AARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFVTPREKYMLRQIEKAT 430
Query: 478 GVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKA 537
K E + P + + A+ IT+ +S +F E N + AE +A A
Sbjct: 431 RQKVEPMHMPTAEAVNETRKQRFAQQITETIESEDLSFFRQIIEDYENEHDTTAEDIAAA 490
Query: 538 LA 539
LA
Sbjct: 491 LA 492
>gi|124022674|ref|YP_001016981.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9303]
gi|123962960|gb|ABM77716.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
MIT 9303]
Length = 636
Score = 265 bits (677), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 155/388 (39%), Positives = 226/388 (58%), Gaps = 22/388 (5%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F S PL + L KG + PIQ ++ G DLVG+A+TG GKT AF LP++E L +
Sbjct: 88 FGFSEPLLKTLAEKGYKQPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLIERLQD 147
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPYHAQEF 232
+G P VLVL PTRELA QV + F Y G L +YGGA + +Q
Sbjct: 148 ----------HGSRPQVLVLAPTRELAMQVADSFRAYAVGHPHLKVLAVYGGADFRSQIN 197
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
LK+G+DVV+GTPGR+ DH+ +G +D S L+ VLDEADEMLRMGF++DVE IL ++
Sbjct: 198 TLKRGVDVVVGTPGRLMDHMRQGTLDTSGLRCLVLDEADEMLRMGFIDDVEWILEQL--P 255
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ Q +LFSAT+PS ++ +S ++L + ++ + + + +R + +S + +
Sbjct: 256 KERQMVLFSATMPSEIRRLSKRYL---HEPAEITIKSRDQEARLIRQRCITLQNSHKLEA 312
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQREVTLAGFRSG 408
+ ++ ++ G IIF TK +A+ L A L+GD+ Q+QRE T+ R G
Sbjct: 313 LRRVLEAFTGEG-VIIFARTKVITLTVAEALESAGHDVAVLNGDVPQNQRERTVERLRKG 371
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-K 467
LVAT+VAARGLD++ + L+I + P D EAY+HR GRTGRAG +G A++ +PR +
Sbjct: 372 SVNILVATDVAARGLDVDRISLVINYDIPFDSEAYVHRIGRTGRAGRSGEAILFVNPRER 431
Query: 468 SSVSKIERESGVKFEHISAPQPADIAKA 495
V ER G E + P A I ++
Sbjct: 432 RFVGGFERAVGQPIEPMDIPNNAAINQS 459
>gi|33863354|ref|NP_894914.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9313]
gi|33640803|emb|CAE21258.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
MIT 9313]
Length = 635
Score = 265 bits (676), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 155/388 (39%), Positives = 226/388 (58%), Gaps = 22/388 (5%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F S PL + L KG + PIQ ++ G DLVG+A+TG GKT AF LP++E L +
Sbjct: 88 FGFSEPLLKTLAEKGYKQPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLIERLHD 147
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPYHAQEF 232
+G P VLVL PTRELA QV + F Y G L +YGGA + +Q
Sbjct: 148 ----------HGSRPQVLVLAPTRELAMQVADSFRAYAVGHPHLKVLAVYGGADFRSQIN 197
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
LK+G+DVV+GTPGR+ DH+ +G +D S L+ VLDEADEMLRMGF++DVE IL ++ +
Sbjct: 198 TLKRGVDVVVGTPGRLMDHMRQGTLDTSGLRCLVLDEADEMLRMGFIDDVEWILEQLPEE 257
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
Q +LFSAT+PS ++ +S ++L + ++ + + + +R + +S + +
Sbjct: 258 R--QMVLFSATMPSEIRRLSKRYL---HEPAEITIKSRDQEARLIRQRCITLQNSHKLEA 312
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQREVTLAGFRSG 408
+ ++ ++ G IIF TK +A+ L A L+GD+ Q+QRE T+ R G
Sbjct: 313 LRRVLEAFTGEG-VIIFARTKVITLTVAEALEAAGHDVAVLNGDVPQNQRERTVERLRKG 371
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-K 467
LVAT+VAARGLD++ + L+I + P D EAY+HR GRTGRAG +G A++ +PR +
Sbjct: 372 SVNILVATDVAARGLDVDRISLVINYDIPFDSEAYVHRIGRTGRAGRSGEAILFVNPRER 431
Query: 468 SSVSKIERESGVKFEHISAPQPADIAKA 495
V ER G E + P A I ++
Sbjct: 432 RFVGGFERAVGQPIEPMDIPNNAAINQS 459
>gi|357418161|ref|YP_004931181.1| ATP-dependent RNA helicase [Pseudoxanthomonas spadix BD-a59]
gi|355335739|gb|AER57140.1| ATP-dependent RNA helicase [Pseudoxanthomonas spadix BD-a59]
Length = 646
Score = 265 bits (676), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 158/383 (41%), Positives = 217/383 (56%), Gaps = 22/383 (5%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ L + G ES PIQA T +L G D++G A+TG GKT AF LP+L +L
Sbjct: 17 LSAPVMAALATVGYESPSPIQAATIPALLAGRDVLGTAQTGTGKTAAFALPVLSNLDLAA 76
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
K P LVL PTRELA QV E F Y ++ G +YGG Y Q L
Sbjct: 77 GK----------PQALVLAPTRELAIQVAEAFQKYAASIPGFHVLPIYGGQAYAPQLQAL 126
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
K+G+ VV+GTPGR+ DH+ERG++DLS L VLDEADEMLRMGF++DVE +L K + +
Sbjct: 127 KRGVHVVVGTPGRVIDHLERGSLDLSGLATLVLDEADEMLRMGFIDDVETVLKKTPETRQ 186
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
V LFSAT+P ++ I+ +LK D +++ A+ R+ + S + +
Sbjct: 187 VA--LFSATMPPAIRRIAQTYLK-DPVEVNIAARTTTSANITQRYWFV--SGLHKLDALT 241
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410
I+ G IIF TK + +LA L A A++GD+QQ+ RE T+A + GK
Sbjct: 242 RILEAEPFDG-MIIFVRTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKL 300
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSS 469
LVAT+VAARGLD+ V ++ + P D E+Y+HR GRTGRAG G A++ PR KS
Sbjct: 301 DILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRAGDAILFVTPREKSM 360
Query: 470 VSKIERESGVKFEHISAPQPADI 492
+ IER + + P D+
Sbjct: 361 LRAIERATRQPITEMQLPSVEDV 383
>gi|21232073|ref|NP_637990.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|21113816|gb|AAM41914.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
Length = 642
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 161/390 (41%), Positives = 220/390 (56%), Gaps = 22/390 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G E+ PIQA T +L G D++G+A+TG GKT AF
Sbjct: 4 ESSAPLLFADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 64 ALPVLSNADLNQVK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + K Q LFSAT+P ++ I+ +LK D + + K S N+R
Sbjct: 174 EAVLKKLPE--KRQVALFSATMPPAIRRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK + +LA L A A++GD+QQ+ R
Sbjct: 229 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAATEELAQKLQARGLAAAAINGDMQQAAR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E T+A + GK LVAT+VAARGLD+ V ++ + P D E+Y+HR GRTGRAG G
Sbjct: 288 EKTIAQLKDGKLDILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGD 347
Query: 459 AVMLYDPR-KSSVSKIERESGVKFEHISAP 487
A++ PR K + IER + E + P
Sbjct: 348 AILFVTPREKGMLRAIERATRQPIEEMQLP 377
>gi|54026656|ref|YP_120898.1| ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
gi|54018164|dbj|BAD59534.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
Length = 602
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 164/419 (39%), Positives = 238/419 (56%), Gaps = 24/419 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES PIQA T +LDG+D+VG A+TG GKT AF +PIL L GR
Sbjct: 48 GYESPSPIQAATIPPLLDGADVVGLAQTGTGKTAAFAIPILMGLEV----------TGRQ 97
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV E F Y + GL +YGG Y Q L++G VV+GTPG
Sbjct: 98 PRALVLAPTRELAIQVAEAFGRYAAHMPGLHVLPIYGGQSYGVQLSGLRRGAHVVVGTPG 157
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+E+G +DLS L++ VLDEADEML+MGF EDVE IL + + Q LFSAT+P+
Sbjct: 158 RVIDHLEKGTLDLSQLQYLVLDEADEMLKMGFQEDVERILA--DTPREKQVALFSATMPA 215
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ IS ++L+ + +++ K + +TN+ + S + + ++
Sbjct: 216 AIRKISKQYLR---EPVEITVKAKTQTNTNITQRWVQVSHQRKLDALTRVLEVEPFEA-M 271
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK+ +LA+ L A A++GDI Q+QRE T+ +SG LVAT+VAARG
Sbjct: 272 IIFVRTKQGTEELAEKLRARGFSAAAINGDIAQNQRERTIGQLKSGALDILVATDVAARG 331
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKF 481
LD++ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + K IER +
Sbjct: 332 LDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGQALLFVAPRERHLLKAIERATRHPL 391
Query: 482 EHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKSAAEELLNNSGLSAAELLAKALA 539
E + P D+ + + IT+ +S + +P F+ E+ + + +A ALA
Sbjct: 392 EEMQLPSVEDVNAQRVSKFGDAITENLSSANLPLFRKLIEDYEREHNIPLVD-IAAALA 449
>gi|66767801|ref|YP_242563.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. 8004]
gi|188990915|ref|YP_001902925.1| cold-shock DEAD-box protein A [Xanthomonas campestris pv.
campestris str. B100]
gi|66573133|gb|AAY48543.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. 8004]
gi|167732675|emb|CAP50869.1| Cold-shock DEAD-box protein A [Xanthomonas campestris pv.
campestris]
Length = 642
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 161/390 (41%), Positives = 220/390 (56%), Gaps = 22/390 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G E+ PIQA T +L G D++G+A+TG GKT AF
Sbjct: 4 ESSAPLLFADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 64 ALPVLSNADLNQVK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + K Q LFSAT+P ++ I+ +LK D + + K S N+R
Sbjct: 174 EAVLKKLPE--KRQVALFSATMPPAIRRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK + +LA L A A++GD+QQ+ R
Sbjct: 229 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAATEELAQKLQARGLAAAAINGDMQQAAR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E T+A + GK LVAT+VAARGLD+ V ++ + P D E+Y+HR GRTGRAG G
Sbjct: 288 EKTIAQLKDGKLDILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGD 347
Query: 459 AVMLYDPR-KSSVSKIERESGVKFEHISAP 487
A++ PR K + IER + E + P
Sbjct: 348 AILFVTPREKGMLRAIERATRQPIEEMQLP 377
>gi|289663283|ref|ZP_06484864.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vasculorum
NCPPB 702]
Length = 640
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 162/390 (41%), Positives = 219/390 (56%), Gaps = 22/390 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G ES PIQA T +L G D++G+A+TG GKT AF
Sbjct: 4 ESSAPLLFADLGLSGAVMKAVTNVGYESPSPIQAATIPALLSGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 64 ALPVLSNADLNQLK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + K Q LFSAT+P ++ I+ +LK D + + K S N+R
Sbjct: 174 EAVLKKLPE--KRQVALFSATMPPAIRRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK +LA L A A++GD+QQ+ R
Sbjct: 229 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E T+A + GK LVAT+VAARGLD+ V ++ + P D E+Y+HR GRTGRAG G
Sbjct: 288 EKTIAQLKDGKLDILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGD 347
Query: 459 AVMLYDPR-KSSVSKIERESGVKFEHISAP 487
A++ PR K + IER + E + P
Sbjct: 348 AILFVTPREKGMLRSIERATRQPIEEMQLP 377
>gi|384428616|ref|YP_005637976.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. raphani
756C]
gi|341937719|gb|AEL07858.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. raphani
756C]
Length = 642
Score = 264 bits (675), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 161/390 (41%), Positives = 220/390 (56%), Gaps = 22/390 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G E+ PIQA T +L G D++G+A+TG GKT AF
Sbjct: 4 ESSAPLLFADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 64 ALPVLSNADLNQVK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + K Q LFSAT+P ++ I+ +LK D + + K S N+R
Sbjct: 174 EAVLKKLPE--KRQVALFSATMPPAIRRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK + +LA L A A++GD+QQ+ R
Sbjct: 229 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAATEELAQKLQARGLAAAAINGDMQQAAR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E T+A + GK LVAT+VAARGLD+ V ++ + P D E+Y+HR GRTGRAG G
Sbjct: 288 EKTIAQLKDGKLDILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGD 347
Query: 459 AVMLYDPR-KSSVSKIERESGVKFEHISAP 487
A++ PR K + IER + E + P
Sbjct: 348 AILFVTPREKGMLRAIERATRQPIEEMQLP 377
>gi|84498694|ref|ZP_00997447.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
gi|84381031|gb|EAP96918.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
Length = 601
Score = 264 bits (675), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 171/423 (40%), Positives = 233/423 (55%), Gaps = 24/423 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
LK G E+ PIQA T +L G +VG A+TG GKT AF LPIL L +KT
Sbjct: 36 LKDVGYETPSPIQAATIPALLAGRHVVGLAQTGTGKTAAFALPILSRL-----DLKQKT- 89
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P LVL PTRELA QV E F+ Y + G+ +YGG Y Q L++G+ +V+
Sbjct: 90 ----PQALVLAPTRELALQVCEAFEKYASRMPGVHVLPVYGGQAYGVQLSALRRGVHIVV 145
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGRI DH+E+G +DLS L+F VLDEADEML+MGF EDVE IL V LFSA
Sbjct: 146 GTPGRIMDHLEKGTLDLSELRFLVLDEADEMLKMGFAEDVETILADTPAEKHVA--LFSA 203
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+PS ++ IS K+L +++ + + N+ L CS + + I+ +
Sbjct: 204 TMPSQIRRISKKYLTD---ALEITVERTTETAPNITQRYLFCSYPQKIDALTRILEVENF 260
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G I+F TK LA+ L A A++GDI Q+QRE T+A +SGK LVAT+V
Sbjct: 261 EG-MIVFVRTKNETEMLAEKLRARGFSATAINGDIAQNQRERTVAQLKSGKLDILVATDV 319
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERES 477
AARGLD+ + ++ + P D E+Y+HR GRTGRAG +G A+ PR+ + K IE+ +
Sbjct: 320 AARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAISFVTPREKYLLKAIEKAT 379
Query: 478 GVKFEHISAPQPADI-AKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAK 536
+ P DI A G T ++ S I AF+ + N + A+ +A
Sbjct: 380 KTTLTEMQLPSVEDINATRLGRFDDRITTALASSDIDAFRDVIAHYVRNHDVPEAD-VAA 438
Query: 537 ALA 539
ALA
Sbjct: 439 ALA 441
>gi|325928505|ref|ZP_08189695.1| ATP-dependent RNA helicase CsdA [Xanthomonas perforans 91-118]
gi|325541118|gb|EGD12670.1| ATP-dependent RNA helicase CsdA [Xanthomonas perforans 91-118]
Length = 537
Score = 264 bits (675), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 161/390 (41%), Positives = 221/390 (56%), Gaps = 22/390 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G ES PIQA T +L G D++G+A+TG GKT AF
Sbjct: 4 ESSAPLLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L +N K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 64 ALPVL---SNADLHQVK-------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + +V LFSAT+P ++ I+ +LK D + + K S N+R
Sbjct: 174 EAVLKKLPEQRQVA--LFSATMPPAIRRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK + +LA L A A++GD+QQ+ R
Sbjct: 229 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG G
Sbjct: 288 EKTIAQLKDGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGD 347
Query: 459 AVMLYDPR-KSSVSKIERESGVKFEHISAP 487
A++ PR K + IER + E + P
Sbjct: 348 AILFVTPREKGMLRSIERATRQPIEEMQLP 377
>gi|325918892|ref|ZP_08180966.1| ATP-dependent RNA helicase CsdA [Xanthomonas vesicatoria ATCC
35937]
gi|325534878|gb|EGD06800.1| ATP-dependent RNA helicase CsdA [Xanthomonas vesicatoria ATCC
35937]
Length = 636
Score = 264 bits (675), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 162/390 (41%), Positives = 219/390 (56%), Gaps = 22/390 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G ES PIQA T +L G D++G+A+TG GKT AF
Sbjct: 4 ESSAPLLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 64 ALPVLSNADLNQLK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + K Q LFSAT+P ++ I+ +LK D + + K S N+R
Sbjct: 174 EAVLKKLPE--KRQVALFSATMPPAIRRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK +LA L A A++GD+QQ+ R
Sbjct: 229 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E T+A + GK LVAT+VAARGLD+ V ++ + P D E+Y+HR GRTGRAG G
Sbjct: 288 EKTIAQLKDGKLDILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGD 347
Query: 459 AVMLYDPR-KSSVSKIERESGVKFEHISAP 487
A++ PR K + IER + E + P
Sbjct: 348 AILFVTPREKGMLRSIERATRQPIEEMQLP 377
>gi|297624335|ref|YP_003705769.1| DEAD/DEAH box helicase [Truepera radiovictrix DSM 17093]
gi|297165515|gb|ADI15226.1| DEAD/DEAH box helicase domain protein [Truepera radiovictrix DSM
17093]
Length = 526
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 161/393 (40%), Positives = 220/393 (55%), Gaps = 28/393 (7%)
Query: 118 VPLR----EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
+PLR L++KG + IQA T L G D++G ARTG GKTLAF LPI L
Sbjct: 5 LPLRASLSRALEAKGFSTPTTIQAATLPHALAGGDVLGLARTGTGKTLAFGLPIANRL-- 62
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
++ GRAP L+L PTRELA QV + + A +YGG Y Q
Sbjct: 63 -----EPESARGRAPRALILTPTRELALQVAGELEWL--APEHNVVTVYGGTGYGKQASD 115
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
LK+G D+V+ TPGR D+ ++G + LS ++ VLDEADEML GF EDVEL+L
Sbjct: 116 LKRGADIVVATPGRAVDYYKQGVLQLSRVEVAVLDEADEMLNAGFEEDVELLLAAT--PQ 173
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
+ QTLLFSATLP W + ++ + L+ L N S + + + ++R V+
Sbjct: 174 ERQTLLFSATLPRWAESLAARHLRDP-----LRANVTSDESVSYDEVAIEAPLASRLGVL 228
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGK 409
D++ + +G +I+FT TK +LA L A A+HGD+ Q QRE L FR+ +
Sbjct: 229 SDVLHVHGTGA-SIVFTRTKAEVDELAKALTSLGHLAEAVHGDLNQVQRERVLERFRASQ 287
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KS 468
LVAT+VAARGLDI +V L++ P E Y HRSGRTGRAG G V+LY PR +
Sbjct: 288 VTVLVATDVAARGLDIPEVDLVVHYRFPEQPERYQHRSGRTGRAGRAGTVVLLYSPRERR 347
Query: 469 SVSKIERESGVKFEHISAPQPADI--AKAAGVE 499
++ +ER + E AP+P D+ AK AG++
Sbjct: 348 ELALLERAIARRIERAGAPRPQDVQRAKLAGLQ 380
>gi|425733846|ref|ZP_18852166.1| DNA/RNA helicase [Brevibacterium casei S18]
gi|425482286|gb|EKU49443.1| DNA/RNA helicase [Brevibacterium casei S18]
Length = 503
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 157/374 (41%), Positives = 221/374 (59%), Gaps = 28/374 (7%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ L + GI FPIQAMT + L G+D++G+A+TG GKTL F +P+L+ +T G
Sbjct: 13 VSGPIVASLAAAGITHPFPIQAMTLPVALSGADIIGQAKTGTGKTLGFGIPLLQRVT-GK 71
Query: 176 TKASKKTGYG--RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
+ +T G R P LV++PTRELAKQV +D + +YGG + Q
Sbjct: 72 DEPGGETAEGDTRLPQALVVVPTRELAKQVAQDLVTASSQRSIDVVTIYGGKEFEPQINA 131
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
LK G+DVV+GTPGR+ D R + L+ ++ VLDEADEML +GF+ DVE I+ V AN
Sbjct: 132 LKAGVDVVVGTPGRLLDLYGRKVLRLNKVRTVVLDEADEMLDLGFLPDVERIIAAVP-AN 190
Query: 294 KVQTLLFSATLPSWVKHISTKFLK-------SDKKTIDLVGNEKMKASTNVRHIVLPCSS 346
+ QT+LFSAT+P V ++ +++ D + + L G N V +
Sbjct: 191 R-QTMLFSATMPGAVITLARRYMNRPTHIRAHDNEDLSLTGK-------NTTQYVYRAHA 242
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTL 402
+S+++ +++ G RTIIFT TK +A +LA L RALHGD+ Q+QRE L
Sbjct: 243 MDKSELVARLLQAEGRG-RTIIFTRTKRTADKLAAELSDRGFAVRALHGDLGQAQREKAL 301
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
FR G LVAT+VAARG+DI+DV ++ + P D + Y+HR GRTGRAGN+GVAV L
Sbjct: 302 KSFRDGTVDVLVATDVAARGIDIDDVTHVVNFQSPEDEKTYVHRIGRTGRAGNSGVAVTL 361
Query: 463 YD----PRKSSVSK 472
D PR ++K
Sbjct: 362 VDWDDMPRWRLINK 375
>gi|418516368|ref|ZP_13082542.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
gi|418519674|ref|ZP_13085726.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
gi|410705118|gb|EKQ63597.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
gi|410706907|gb|EKQ65363.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
Length = 632
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 160/390 (41%), Positives = 220/390 (56%), Gaps = 22/390 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G ES PIQA T +L G D++G+A+TG GKT AF
Sbjct: 4 ESSAPLLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 64 ALPVLSNADLNQVK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + +V LFSAT+P ++ I+ +LK D + + K S N+R
Sbjct: 174 EAVLKKLPEQRQVA--LFSATMPPAIRRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK + +LA L A A++GD+QQ+ R
Sbjct: 229 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG G
Sbjct: 288 EKTIAQLKDGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGD 347
Query: 459 AVMLYDPR-KSSVSKIERESGVKFEHISAP 487
A++ PR K + IER + E + P
Sbjct: 348 AILFVTPREKGMLRSIERATRQPIEEMQLP 377
>gi|78213173|ref|YP_381952.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
gi|78197632|gb|ABB35397.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
Length = 607
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 161/381 (42%), Positives = 218/381 (57%), Gaps = 24/381 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F S L L KG PIQ F ++ G DLVG+A+TG GKT AF LP+LE L +
Sbjct: 62 FGFSEALLRTLADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLES 121
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY-GGAVGLTSCCLYGGAPYHAQEF 232
G +KT P LVL PTRELA QV E F Y G L +YGG + +Q
Sbjct: 122 G-----QKT-----PQALVLAPTRELAMQVAESFKAYSAGHPHLKVLAVYGGTDFRSQIS 171
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G+DVV+GTPGR+ DH+ +G +D S L+ VLDEADEMLRMGF++DVE IL ++ +
Sbjct: 172 ALRRGVDVVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILDQLPEQ 231
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS-Q 351
+V +LFSAT+P ++ +S ++LK D + + ++ R I +P + Q
Sbjct: 232 RQV--VLFSATMPPEIRRLSKRYLK-DPAEVTIRTKDQEGKRIRQRSITVPMPHKLEALQ 288
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQREVTLAGFRS 407
+ D C S G IIF TK +A+ L L+GD+ Q+QRE T+ RS
Sbjct: 289 RVLDA--CGSEG--VIIFARTKAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRS 344
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR- 466
G LVAT+VAARGLD+ + L+I + P D EAY+HR GRTGRAG TG AV+ PR
Sbjct: 345 GSVDILVATDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFVTPRE 404
Query: 467 KSSVSKIERESGVKFEHISAP 487
+ + +ER +G E + P
Sbjct: 405 RRFIRNLERATGQPIEAMEVP 425
>gi|88808892|ref|ZP_01124401.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
gi|88786834|gb|EAR17992.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
Length = 607
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 166/451 (36%), Positives = 245/451 (54%), Gaps = 26/451 (5%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F S L L+ KG + PIQ F ++ G DLVG+A+TG GKT AF LP+LE L
Sbjct: 62 FGFSEALLRTLEEKGYKEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLE- 120
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPYHAQEF 232
G P VLVL PTRELA QV + F Y G L +YGG+ + +Q
Sbjct: 121 ---------GRSSKPRVLVLAPTRELAMQVADSFKAYAAGHPHLNVLAIYGGSDFRSQIH 171
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
LK+G+DVV+GTPGR+ DH+ +G +D + L+ VLDEADEMLRMGF++DVE IL ++ +
Sbjct: 172 TLKRGVDVVVGTPGRVMDHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVEWILDQLPEE 231
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+V +LFSAT+P+ ++ +S ++L ++ ++ K + + +R + +S + +
Sbjct: 232 RQV--VLFSATMPNEIRRLSKRYL---QEPAEITIKTKDREAKRIRQRSITMQNSHKIEA 286
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQREVTLAGFRSG 408
+ ++ + G IIF TK +A+ L A L+GD+ Q+QRE T+ R G
Sbjct: 287 LNRVLEAVTGEG-VIIFARTKAITLTVAESLEAAGHDVAVLNGDVPQNQRERTVDRLRKG 345
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-K 467
LVAT+VAARGLD++ + L+I + P D EAY+HR GRTGRAG TG A++ PR +
Sbjct: 346 TVNILVATDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAILFVTPRER 405
Query: 468 SSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQV----SDSVIPAFKSAAEELL 523
V +ER E + P A+I ++ +++ +D P + + +
Sbjct: 406 RFVGNLERAVNQSIEPMDIPSNAEINQSRLDRLRNRLSEAAVCEADDETPLLQELIQRVA 465
Query: 524 NNSGLSAAELLAKALAKAVVSAFLFSSSSNS 554
LSA +L AL V L S S
Sbjct: 466 QEHELSADQLALAALRLVVGDQPLLVSGDES 496
>gi|21243540|ref|NP_643122.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
306]
gi|21109105|gb|AAM37658.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
306]
Length = 632
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 160/390 (41%), Positives = 220/390 (56%), Gaps = 22/390 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G ES PIQA T +L G D++G+A+TG GKT AF
Sbjct: 4 ESSAPLLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 64 ALPVLSNADLNQVK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + +V LFSAT+P ++ I+ +LK D + + K S N+R
Sbjct: 174 EAVLKKLPEQRQVA--LFSATMPPAIRRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK + +LA L A A++GD+QQ+ R
Sbjct: 229 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG G
Sbjct: 288 EKTIAQLKDGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGD 347
Query: 459 AVMLYDPR-KSSVSKIERESGVKFEHISAP 487
A++ PR K + IER + E + P
Sbjct: 348 AILFVTPREKGMLRSIERATRQPIEEMQLP 377
>gi|390991391|ref|ZP_10261657.1| DEAD/DEAH box helicase family protein [Xanthomonas axonopodis pv.
punicae str. LMG 859]
gi|372553884|emb|CCF68632.1| DEAD/DEAH box helicase family protein [Xanthomonas axonopodis pv.
punicae str. LMG 859]
Length = 632
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 160/390 (41%), Positives = 220/390 (56%), Gaps = 22/390 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G ES PIQA T +L G D++G+A+TG GKT AF
Sbjct: 4 ESSAPLLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 64 ALPVLSNADLNQVK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + +V LFSAT+P ++ I+ +LK D + + K S N+R
Sbjct: 174 EAVLKKLPEQRQVA--LFSATMPPAIRRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK + +LA L A A++GD+QQ+ R
Sbjct: 229 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG G
Sbjct: 288 EKTIAQLKDGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGD 347
Query: 459 AVMLYDPR-KSSVSKIERESGVKFEHISAP 487
A++ PR K + IER + E + P
Sbjct: 348 AILFVTPREKGMLRSIERATRQPIEEMQLP 377
>gi|381172244|ref|ZP_09881376.1| DEAD/DEAH box helicase family protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|380687289|emb|CCG37863.1| DEAD/DEAH box helicase family protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
Length = 612
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 156/366 (42%), Positives = 210/366 (57%), Gaps = 22/366 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES PIQA T +L G D++G+A+TG GKT AF LP+L + K
Sbjct: 8 GYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSNADLNQVK---------- 57
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV E F Y A+ G +YGG PY Q LK+G+ VV+GTPG
Sbjct: 58 PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGTPG 117
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH++RG +DLS LK VLDEADEMLRMGF++DVE +L K+ + +V LFSAT+P
Sbjct: 118 RVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVA--LFSATMPP 175
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ I+ +LK D + + K S N+R S + + I+ G
Sbjct: 176 AIRRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDG-M 231
Query: 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK + +LA L A A++GD+QQ+ RE T+A + GK LVAT+VAARG
Sbjct: 232 IIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARG 291
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKF 481
LD+ + ++ + P D E+Y+HR GRTGRAG G A++ PR K + IER +
Sbjct: 292 LDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIERATRQPI 351
Query: 482 EHISAP 487
E + P
Sbjct: 352 EEMQLP 357
>gi|294665477|ref|ZP_06730761.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292604731|gb|EFF48098.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 648
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 160/390 (41%), Positives = 220/390 (56%), Gaps = 22/390 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G ES PIQA T +L G D++G+A+TG GKT AF
Sbjct: 20 ESSAPLLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 79
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 80 ALPVLSNADLNQVK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 129
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 130 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 189
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + +V LFSAT+P ++ I+ +LK D + + K S N+R
Sbjct: 190 EAVLKKLPEQRQVA--LFSATMPPAIRRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYW 244
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK + +LA L A A++GD+QQ+ R
Sbjct: 245 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAR 303
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG G
Sbjct: 304 EKTIAQLKDGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGD 363
Query: 459 AVMLYDPR-KSSVSKIERESGVKFEHISAP 487
A++ PR K + IER + E + P
Sbjct: 364 AILFVTPREKGMLRSIERATRQPIEEMQLP 393
>gi|294625117|ref|ZP_06703762.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292600581|gb|EFF44673.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
Length = 648
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 160/390 (41%), Positives = 220/390 (56%), Gaps = 22/390 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G ES PIQA T +L G D++G+A+TG GKT AF
Sbjct: 20 ESSAPLLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 79
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 80 ALPVLSNADLNQVK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 129
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 130 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 189
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + +V LFSAT+P ++ I+ +LK D + + K S N+R
Sbjct: 190 EAVLKKLPEQRQVA--LFSATMPPAIRRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYW 244
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK + +LA L A A++GD+QQ+ R
Sbjct: 245 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAR 303
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG G
Sbjct: 304 EKTIAQLKDGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGD 363
Query: 459 AVMLYDPR-KSSVSKIERESGVKFEHISAP 487
A++ PR K + IER + E + P
Sbjct: 364 AILFVTPREKGMLRSIERATRQPIEEMQLP 393
>gi|254517068|ref|ZP_05129126.1| cold-shock deAd-box protein a [gamma proteobacterium NOR5-3]
gi|219674573|gb|EED30941.1| cold-shock deAd-box protein a [gamma proteobacterium NOR5-3]
Length = 609
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 176/440 (40%), Positives = 241/440 (54%), Gaps = 45/440 (10%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P + ++ L + L G E+ IQ MT +L+G DLVG+A+TG GKT AF LPI
Sbjct: 7 PGSFDELQLPAFLMKALSDVGYETPSAIQTMTIPPLLEGKDLVGQAQTGTGKTAAFALPI 66
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAP 226
L L K SK P LVL PTRELA QV E F Y + G +YGG+
Sbjct: 67 LARLD---PKLSK-------PQALVLAPTRELAIQVAEAFQKYARHSKGFKVLPIYGGSD 116
Query: 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286
Y Q +L++G+ V++GTPGR+ DH+ RG+++LS+L VLDEADEMLRMGF++DVE IL
Sbjct: 117 YRTQLRQLERGVHVIVGTPGRVMDHMRRGSLNLSALTTLVLDEADEMLRMGFIDDVEWIL 176
Query: 287 GKVEDANKVQTLLFSATLPSWVKHISTKFL-KSDKKTIDLVGNEKMKASTN--VRHIVLP 343
+ K Q LFSAT+P ++ I+ + L K ++ TI K+K TN +R V
Sbjct: 177 EQT--PPKRQIALFSATMPDAIRRIAKQHLNKPEEITI------KLKTVTNASIRQRVWM 228
Query: 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGDIQQSQR 398
+ + I+ + G IIF T+ + +LAD L AR AL+GDI Q+QR
Sbjct: 229 MGGMHKLDALTRILETEDTDG-VIIFVRTRIATQELADKL-SARGYATAALNGDIAQNQR 286
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E T+ + G L+AT+VAARGLD+ + +I + P D EAY+HR GRTGRAG TG
Sbjct: 287 EKTVENLKKGGLDILIATDVAARGLDVERISHVINYDIPNDPEAYVHRIGRTGRAGRTGE 346
Query: 459 AVMLYDPRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKS 517
A++ R+ + + IER +G K E + P T QVSD FK+
Sbjct: 347 AILFAANRERRLLRTIERVTGQKIESMELP---------------TSEQVSDKRASRFKA 391
Query: 518 AAEELLNNSGLSAAELLAKA 537
E L+ L AA L ++
Sbjct: 392 RITETLDTRDLGAARELVES 411
>gi|194365003|ref|YP_002027613.1| DEAD/DEAH box helicase [Stenotrophomonas maltophilia R551-3]
gi|194347807|gb|ACF50930.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
R551-3]
Length = 646
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 162/407 (39%), Positives = 224/407 (55%), Gaps = 37/407 (9%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +L+G D++G+A+TG GKT AF LP+L ++ K
Sbjct: 28 GYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVLSNIDLQQIK---------- 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV E F Y + G +YGG PY Q L++G+ +V+GTPG
Sbjct: 78 PQALVLAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSALRRGVHIVVGTPG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH++R +DLS LK VLDEADEMLRMGF++DVE +L K+ K Q LFSAT+P
Sbjct: 138 RVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKL--PAKRQVALFSATMPP 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ I+ +L+ +++ K S N+R S + + I+
Sbjct: 196 QIRRIAQTYLQD---PVEVTIAAKTTTSANIRQRYWWVSGMHKLDALTRILEVEPFDA-M 251
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK +LA L A A++GD+QQ+QRE T+A + GK LVAT+VAARG
Sbjct: 252 IIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDILVATDVAARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKF 481
LD+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR K + +IER +
Sbjct: 312 LDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGMLRQIERATRQPI 371
Query: 482 EHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGL 528
E + P VEA V+D+ I F S E L GL
Sbjct: 372 EEMQLP---------SVEA------VNDNRINKFTSRITETLGQGGL 403
>gi|395237134|ref|ZP_10415233.1| ATP-dependent RNA helicase DeaD [Turicella otitidis ATCC 51513]
gi|423351003|ref|ZP_17328655.1| hypothetical protein HMPREF9719_00950 [Turicella otitidis ATCC
51513]
gi|394487633|emb|CCI83321.1| ATP-dependent RNA helicase DeaD [Turicella otitidis ATCC 51513]
gi|404387055|gb|EJZ82184.1| hypothetical protein HMPREF9719_00950 [Turicella otitidis ATCC
51513]
Length = 704
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 167/432 (38%), Positives = 240/432 (55%), Gaps = 24/432 (5%)
Query: 92 EPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVG 151
E G E +E GE E P S IS + +K G PIQA T +++ G D+VG
Sbjct: 83 EAAQGDEARESGEDEGPGFES-LGISEEMLAAVKKAGFTKPSPIQAETIPLLMAGRDVVG 141
Query: 152 RARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211
A+TG GKT AF LP+L SK R P LVL PTRELA QV + F +
Sbjct: 142 LAQTGTGKTAAFALPVL----------SKVDLKARTPQALVLAPTRELAAQVADSFQEFA 191
Query: 212 GAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270
G + GL +YGG Y Q L++G +++GTPGRI DH++RG++D+S LK+ VLDEA
Sbjct: 192 GDLKGLEVLPVYGGQSYGFQLSGLRRGAQIIVGTPGRIIDHLKRGSLDISELKYLVLDEA 251
Query: 271 DEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK 330
DEML MGF EDVE IL +A +V LFSAT+P+ ++ IS ++L ++ + + EK
Sbjct: 252 DEMLNMGFQEDVERILEDTPEAKQV--ALFSATMPAGIRKISQQYL-TNPAEVTVKTREK 308
Query: 331 MKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---- 386
+ R I +P + Q + I+ G I+F TK ++AD L A
Sbjct: 309 TNTNITQRWIFVPHRD--KLQALVRILEVTDVDG-MIVFVRTKSETEEVADALRAAGFSA 365
Query: 387 RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHR 446
A++GDI Q+QRE T+ +SG+ LVAT+VAARGLD+ + ++ + PR+ E+Y+HR
Sbjct: 366 AAINGDIAQAQRERTVEQLKSGRLDILVATDVAARGLDVERISHVVNFDIPREAESYVHR 425
Query: 447 SGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETIT 505
GRTGRAG +G A++ P+ K + IER + P ++ +A E+IT
Sbjct: 426 IGRTGRAGRSGEAILFVTPKEKRMLRTIERATKATLTEDELPTVDEVNEARKKRFRESIT 485
Query: 506 Q-VSDSVIPAFK 516
+ + D + F+
Sbjct: 486 KHLDDKQVALFR 497
>gi|346725640|ref|YP_004852309.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citrumelo
F1]
gi|346650387|gb|AEO43011.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citrumelo
F1]
Length = 632
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 160/390 (41%), Positives = 220/390 (56%), Gaps = 22/390 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G ES PIQA T +L G D++G+A+TG GKT AF
Sbjct: 4 ESSAPLLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 64 ALPVLSNADLHQVK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + +V LFSAT+P ++ I+ +LK D + + K S N+R
Sbjct: 174 EAVLKKLPEQRQVA--LFSATMPPAIRRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK + +LA L A A++GD+QQ+ R
Sbjct: 229 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG G
Sbjct: 288 EKTIAQLKDGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGD 347
Query: 459 AVMLYDPR-KSSVSKIERESGVKFEHISAP 487
A++ PR K + IER + E + P
Sbjct: 348 AILFVTPREKGMLRSIERATRQPIEEMQLP 377
>gi|344942485|ref|ZP_08781772.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
gi|344259772|gb|EGW20044.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
Length = 596
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 166/432 (38%), Positives = 242/432 (56%), Gaps = 26/432 (6%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
P+ LK G E+ PIQA T ++L G D++G+A+TG GKT AF LPIL
Sbjct: 19 PVLRALKDVGYETPSPIQAQTIPLLLQGKDVLGQAQTGTGKTAAFALPIL---------- 68
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKG 237
S+ + P VLVL PTRELA QV E F Y + G +YGG Y Q +LK+G
Sbjct: 69 SRIDLKQKDPQVLVLAPTRELAIQVAEAFQRYAAHLKGFHVLPIYGGQDYTTQLRQLKRG 128
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
VV+GTPGR+ DH+ +G ++L L F VLDEADEMLRMGF++DVE IL ++ + K Q
Sbjct: 129 AHVVVGTPGRVMDHMRKGTLNLKGLGFLVLDEADEMLRMGFIDDVEWILDQIPE--KRQI 186
Query: 298 LLFSATLPSWVKHISTKFLKSDKK-TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDI 356
LFSAT+PS ++ I+ ++L + TI + ++ N+R S + + I
Sbjct: 187 ALFSATMPSVIRKIAQQYLNEPEHITIKVT----TASAENIRQRYWLVSGVHKLDALTRI 242
Query: 357 IRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMT 412
+ + G IIF TK S +LA+ L A A++GD+ Q+ RE +A ++GK
Sbjct: 243 LEAETFDG-MIIFVRTKTSTVELAEKLEARGYSAAAINGDMSQALRERAIANLKNGKLDI 301
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVS 471
L+AT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG TG A++ PR ++ ++
Sbjct: 302 LIATDVAARGLDVDRITHVVNYDIPYDTESYVHRIGRTGRAGRTGDAILFIAPRERNLLA 361
Query: 472 KIERESGVKFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKSAAEELLNNSGLSA 530
IE+ + K E + P I + IT ++ + F E+ ++A
Sbjct: 362 NIEKATKQKVEEMGLPSTEVINNKRISRFKQNITDTLAAEELSFFSQLLEQYQQEHNVTA 421
Query: 531 AELLAKALAKAV 542
E +A ALAK V
Sbjct: 422 LE-IASALAKLV 432
>gi|326329383|ref|ZP_08195707.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
gi|325952709|gb|EGD44725.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
Length = 615
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 156/357 (43%), Positives = 210/357 (58%), Gaps = 21/357 (5%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S + E +K+ G E+ IQA T +L G D+VG A+TG GKT AF LP+L +L
Sbjct: 34 LSAGVLEAVKALGYETPSAIQAATIPTLLQGRDVVGLAQTGTGKTAAFALPVLSNLDV-- 91
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
Y AP LVL PTRELA QV E F+ Y + G+ +YGG Y Q L
Sbjct: 92 --------YQNAPQALVLAPTRELALQVCEAFERYASNLDGVRILPVYGGQGYGPQLTAL 143
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G+ VV+GTPGRI DH+E+G +DLS L+F VLDEADEML MGF EDVE IL E
Sbjct: 144 RRGVHVVVGTPGRIMDHLEKGTLDLSQLRFLVLDEADEMLNMGFAEDVETILA--ETPED 201
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
Q LFSAT+P+ ++ +S K+L+ D + I + K + +TN+ L S + +
Sbjct: 202 KQVALFSATMPAQIRRLSKKYLR-DAEEISV--KAKTQTNTNITQRYLMVSYPQKVDALT 258
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410
I+ + G I+FT TK LA+ L A A++GDI Q+QRE T+ + G
Sbjct: 259 RILEVENFEG-MIVFTRTKSETESLAEKLRARGFAATAINGDIAQAQREKTVNQLKDGSL 317
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK 467
LVAT+VAARGLD+ + ++ + P DVEAY+HR GRTGRAG TG A+ PR+
Sbjct: 318 DILVATDVAARGLDVERISHVVNYDLPTDVEAYVHRIGRTGRAGRTGDAISFVTPRE 374
>gi|384418608|ref|YP_005627968.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
BLS256]
gi|353461521|gb|AEQ95800.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 650
Score = 263 bits (671), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 159/390 (40%), Positives = 221/390 (56%), Gaps = 22/390 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G ES PIQA T +L G D++G+A+TG GKT AF
Sbjct: 20 ESSAPLLFADLGLSGAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 79
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 80 ALPVLSNADLNQVK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 129
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 130 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 189
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + K Q LFSAT+P ++ I+ +LK +++ K S ++R
Sbjct: 190 EAVLKKLPE--KRQVALFSATMPPAIRRIAQTYLKD---PVEVTIAAKTTTSASIRQRYW 244
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
+ + + I+ G IIF TK + +LA L A A++GD+QQ+ R
Sbjct: 245 WVNGLHKLDALTRILEVEPFDG-MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAR 303
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG TG
Sbjct: 304 EKTIAQLKDGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRTGD 363
Query: 459 AVMLYDPR-KSSVSKIERESGVKFEHISAP 487
A++ PR K + IER + E + P
Sbjct: 364 AILFVTPREKGMLRSIERATRQPIEEMQLP 393
>gi|78184980|ref|YP_377415.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
gi|78169274|gb|ABB26371.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
Length = 624
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 163/394 (41%), Positives = 224/394 (56%), Gaps = 24/394 (6%)
Query: 101 ERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKT 160
+ +SE + F S L + L KG PIQ F ++ G DLVG+A+TG GKT
Sbjct: 63 DEAKSEPQSGFDGFGFSEALLKTLADKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKT 122
Query: 161 LAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSC 219
AF LP+LE L +G +KT P VLVL PTRELA QV + F Y G L
Sbjct: 123 AAFALPLLERLESG-----QKT-----PQVLVLAPTRELAMQVADSFKAYAAGHPHLKVL 172
Query: 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV 279
+YGG + +Q L++G+DVV+GTPGR+ DH+ +G +D S L VLDEADEMLRMGF+
Sbjct: 173 AVYGGTDFRSQISTLRRGVDVVVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFI 232
Query: 280 EDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRH 339
+DVE IL ++ + Q +LFSAT+P ++ +S ++L +D + + ++ R
Sbjct: 233 DDVEWILEQL--PKERQVVLFSATMPPEIRRLSKRYL-NDPAEVTIKTKDQDGKLIRQRA 289
Query: 340 IVLPCSSSARS-QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQ 394
I +P S + Q + D C G IIF TK +A+ L A L+GD+
Sbjct: 290 ITVPMSHKLEALQRVLDA--CGGEG--VIIFARTKVITLTVAETLEAAGHQVAVLNGDVP 345
Query: 395 QSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
Q+QRE T+ RSG LVAT+VAARGLD+ + L+I + P D EAY+HR GRTGRAG
Sbjct: 346 QNQRERTVERLRSGSVDVLVATDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAG 405
Query: 455 NTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487
TG AV+ PR + + +ER +G E + P
Sbjct: 406 RTGEAVLFMTPRERRFIRNLERATGQPIEMMEVP 439
>gi|295394596|ref|ZP_06804815.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
49030]
gi|294972489|gb|EFG48345.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
49030]
Length = 459
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 151/372 (40%), Positives = 214/372 (57%), Gaps = 13/372 (3%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L + GI FPIQA+T + L G+D++G+A+TG GKTL F +P+L+ + +
Sbjct: 11 VEAPIVESLTNAGITHPFPIQALTLPVALTGADIIGQAKTGTGKTLGFGIPLLQRILDEQ 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
++ GRAP LV++PTRELA QV +D V + +YGG + Q LK
Sbjct: 71 SREQ-----GRAPRALVVVPTRELAHQVADDLRVASRTFSPSIVTIYGGKDFEPQIRALK 125
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
G DVV+GTPGR+ D R ++ S + V DEADEML +GF+ DVE I+ + K
Sbjct: 126 DGADVVVGTPGRLLDLYGRRVLNFSHITTAVFDEADEMLDLGFLPDVEKIVAAL--PAKR 183
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QT+LFSAT+P V ++ +++ ++ S N + V S +++++
Sbjct: 184 QTMLFSATMPGQVIALARRYMTQPTHIRATQASDTSTTSVNTKQYVYRAHSMDKTELVGR 243
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFM 411
I+R G RTIIF TK +A +L L A+ALHGD+ Q RE L FR G
Sbjct: 244 ILRAEGRG-RTIIFARTKRTADRLTGELKARGFQAQALHGDLNQHMREKALKRFRDGTTD 302
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS 471
LVAT+VAARG+DI+DV +I + P D + Y+HR GRTGRAGNTG+AV L D +
Sbjct: 303 VLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGNTGIAVTLIDWEDVAKW 362
Query: 472 K-IERESGVKFE 482
K I R G+ F+
Sbjct: 363 KLINRTLGLDFD 374
>gi|399020147|ref|ZP_10722287.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
gi|398096157|gb|EJL86486.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
Length = 899
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 170/436 (38%), Positives = 240/436 (55%), Gaps = 24/436 (5%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S +S PL LK G E+ PIQA T +L+ D++G+A+TG GKT AF LPIL +
Sbjct: 10 SDLNLSEPLLRVLKELGYETPSPIQAATIPTLLNNRDVLGQAQTGTGKTAAFALPILSRI 69
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQ 230
T AP LVL PTRELA QV E F Y + G +YGG Y Q
Sbjct: 70 DIRQT----------APQALVLAPTRELAIQVAEAFQRYATHIPGFHVLPIYGGQSYGPQ 119
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
L++G+ VV+GTPGR+ DH+++G++DLS LK VLDEADEMLRMGF++DVE IL K
Sbjct: 120 LSALRRGVHVVVGTPGRVIDHLDKGSLDLSQLKTMVLDEADEMLRMGFIDDVESILQKTP 179
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
QT LFSAT+P+ +K I+ +L+ D I + K + N+R S +
Sbjct: 180 ATR--QTTLFSATMPAVIKRIAKTYLR-DPAEITVAA--KTGTAENIRQRYWLVSGMHKL 234
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFR 406
+ I+ G IIF+ TK +LA L A A++GD+QQ QRE T+ +
Sbjct: 235 DALTRILEVEPFDG-LIIFSRTKLGTEELAGKLQARGFAAAAINGDVQQQQRERTIQQLK 293
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
G+ L+AT+VAARGLD+ + +I + P D E+Y HR GRTGRAG +G A++ PR
Sbjct: 294 DGQIDILIATDVAARGLDVERISHVINYDVPYDPESYTHRIGRTGRAGRSGEAILFITPR 353
Query: 467 KSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKSAAEELLN 524
+ ++ K IER + ++ P + E I + ++D + F+S E+
Sbjct: 354 EKNLLKSIERSTRQPITQMTLPSVQAVNDVRVARFKEQIGETLADGGLDIFRSLIEDYER 413
Query: 525 NSGLSAAELLAKALAK 540
++A + +A ALAK
Sbjct: 414 EQNVTAVD-IAAALAK 428
>gi|289668227|ref|ZP_06489302.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. musacearum
NCPPB 4381]
Length = 640
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 162/390 (41%), Positives = 218/390 (55%), Gaps = 22/390 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G ES PIQA T +L G D++G+A+TG GKT AF
Sbjct: 4 ESSAPLLFADLGLSGAVMKAVANVGYESPSPIQAATIPALLSGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 64 ALPVLSNADLNQLK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + K Q LFSAT+P + I+ +LK D + + K S N+R
Sbjct: 174 EAVLKKLPE--KRQVALFSATMPPAICRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK +LA L A A++GD+QQ+ R
Sbjct: 229 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E T+A + GK LVAT+VAARGLD+ V ++ + P D E+Y+HR GRTGRAG G
Sbjct: 288 EKTIAQLKDGKLDILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGD 347
Query: 459 AVMLYDPR-KSSVSKIERESGVKFEHISAP 487
A++ PR K + IER + E + P
Sbjct: 348 AILFVTPREKGMLRSIERATRQPIEEMQLP 377
>gi|340794810|ref|YP_004760273.1| hypothetical protein CVAR_1849 [Corynebacterium variabile DSM
44702]
gi|340534720|gb|AEK37200.1| hypothetical protein CVAR_1849 [Corynebacterium variabile DSM
44702]
Length = 732
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 155/360 (43%), Positives = 210/360 (58%), Gaps = 22/360 (6%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQA T ++DG D+VG A+TG GKT AF LP L L R P VLVL
Sbjct: 94 PIQAATIPALMDGHDVVGLAQTGTGKTAAFALPALSRLDTTE----------RHPQVLVL 143
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCC-LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI 252
PTRELA Q + F+ + +G S +YGGAPY AQ L++G V++GTPGRI DH+
Sbjct: 144 APTRELALQSADAFESFASHIGGVSILPIYGGAPYGAQLSGLRRGAQVIVGTPGRIIDHL 203
Query: 253 ERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 312
E+G++DLS L+F VLDEADEML MGF EDVE IL D+ +V LFSAT+PS ++ +S
Sbjct: 204 EKGSLDLSHLRFLVLDEADEMLNMGFQEDVERILADTPDSRQV--ALFSATMPSAIRRLS 261
Query: 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTET 372
++L ++ V +E+ + N+ L S + + I+ IIF T
Sbjct: 262 KQYLNDPQEYT--VKSEQ-RTGDNITQDYLMVSHRNKLDALTRILEVTEFDA-MIIFVRT 317
Query: 373 KESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV 428
K +LAD L A A++GDI Q+QRE T+ + G+ LVAT+VAARGLD++ +
Sbjct: 318 KSDTEELADKLRARGFEAAAINGDIAQNQRERTVDQLKDGRLDILVATDVAARGLDVDRI 377
Query: 429 QLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAP 487
+ + PRD E+Y+HR GRTGRAG TG A++ PR+ + K IER + I P
Sbjct: 378 THVFNYDIPRDTESYVHRIGRTGRAGRTGRAILFVTPRERRLLKNIERATKSHPNEIQLP 437
>gi|260434308|ref|ZP_05788278.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109]
gi|260412182|gb|EEX05478.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109]
Length = 607
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 160/381 (41%), Positives = 217/381 (56%), Gaps = 24/381 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F S L L KG PIQ F ++ G DLVG+A+TG GKT AF LP+LE L +
Sbjct: 62 FGFSEALLRTLADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLES 121
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY-GGAVGLTSCCLYGGAPYHAQEF 232
G +KT P LVL PTRELA QV E F Y G L +YGG + +Q
Sbjct: 122 G-----QKT-----PQALVLAPTRELAMQVAESFKAYSAGHPHLKVLAVYGGTDFRSQIS 171
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G+DVV+GTPGR+ DH+ +G +D S L+ VLDEADEMLRMGF++DVE IL ++ +
Sbjct: 172 ALRRGVDVVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILDQLPEQ 231
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS-Q 351
+V +LFSAT+P ++ +S ++LK D + + ++ R I +P + Q
Sbjct: 232 RQV--VLFSATMPPEIRRLSKRYLK-DPAEVTIRTKDQEGKRIRQRSITVPMPHKLEALQ 288
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQREVTLAGFRS 407
+ D C G IIF TK +A+ L L+GD+ Q+QRE T+ RS
Sbjct: 289 RVLDA--CGGEG--VIIFARTKAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRS 344
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR- 466
G LVAT+VAARGLD+ + L+I + P D EAY+HR GRTGRAG TG AV+ PR
Sbjct: 345 GSVDILVATDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFVTPRE 404
Query: 467 KSSVSKIERESGVKFEHISAP 487
+ + +ER +G E + P
Sbjct: 405 RRFIRNLERATGQPIEAMEVP 425
>gi|188575689|ref|YP_001912618.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188520141|gb|ACD58086.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 614
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 157/366 (42%), Positives = 208/366 (56%), Gaps = 22/366 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES PIQA T +L G D++G+A+TG GKT AF LP+L + K
Sbjct: 8 GYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSNADLNQVK---------- 57
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV E F Y A+ G +YGG PY Q LK+G+ VV+GTPG
Sbjct: 58 PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGTPG 117
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH++RG +DLS LK VLDEADEMLRMGF++DVE +L K+ + K Q LFSAT+P
Sbjct: 118 RVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPE--KRQVALFSATMPP 175
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ I+ +LK + I K S N+R S + + I+ G
Sbjct: 176 AIRRIAQTYLKDPAEVIIAA---KTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDG-M 231
Query: 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK +LA L A A++GD+QQ+ RE T+A + GK LVAT+VAARG
Sbjct: 232 IIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARG 291
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKF 481
LD+ + ++ + P D E+Y+HR GRTGRAG TG A++ R K + IER +
Sbjct: 292 LDVERISHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTLREKGMLRSIERATRQPI 351
Query: 482 EHISAP 487
E + P
Sbjct: 352 EEMQLP 357
>gi|58581173|ref|YP_200189.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|84623095|ref|YP_450467.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|58425767|gb|AAW74804.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|84367035|dbj|BAE68193.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 634
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 161/390 (41%), Positives = 217/390 (55%), Gaps = 22/390 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + G ES PIQA T +L G D++G+A+TG GKT AF
Sbjct: 4 ESSAPLLFADLGLSGAVMRAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 64 ALPVLSNADLNQVK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + K Q LFSAT+P ++ I+ +LK + I K S N+R
Sbjct: 174 EAVLKKLPE--KRQVALFSATMPPAIRRIAQTYLKDPAEVIIAA---KTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK +LA L A A++GD+QQ+ R
Sbjct: 229 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG TG
Sbjct: 288 EKTIAQLKDGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRTGD 347
Query: 459 AVMLYDPR-KSSVSKIERESGVKFEHISAP 487
A++ R K + IER + E + P
Sbjct: 348 AILFVTLREKGMLRSIERATRQPIEEMQLP 377
>gi|373253040|ref|ZP_09541158.1| DEAD/DEAH box helicase [Nesterenkonia sp. F]
Length = 644
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 174/486 (35%), Positives = 257/486 (52%), Gaps = 24/486 (4%)
Query: 62 EERSETSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLR 121
+ER ET+ EP + + + + ++ ++E E + ES P A + +
Sbjct: 11 DERQETA----EPASTEEQNPQTEQTTEQMEESVSSETPAKTESAEP-AFHTLGLDHRVM 65
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ G + IQA T ++ G D+VG A+TG GKT AF LP L SL A
Sbjct: 66 AVVDRMGYATPTAIQARTIPLLNQGRDVVGLAQTGTGKTAAFALPTLSSLA-----AEHD 120
Query: 182 TG-YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGID 239
G R P LVL PTRELA QV + F Y V G+T +YGGAPY Q L++G
Sbjct: 121 AGQLTRTPKALVLAPTRELALQVADAFSTYAADVDGVTVLPIYGGAPYGPQLDGLRRGAQ 180
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+GTPGR+ DH++RG++DLS ++ VLDEADEMLRMGF E+V+ IL K A+K Q L
Sbjct: 181 VVVGTPGRVIDHMQRGSLDLSGIEHLVLDEADEMLRMGFAEEVDQILAKTP-ASK-QVAL 238
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSAT+P ++ IS +L +++ E S+ + + A+ + I+
Sbjct: 239 FSATMPKAIRRISADYLND---PVEVSVKEATSTSSTISQRYVQVKHHAKGDALVRIMET 295
Query: 360 YSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
+ G I+F T+ + ++A+ L A A++GD+ Q RE T+ R+G+ LVA
Sbjct: 296 ETQDG-AIVFVRTRAATEEVAEKLTARGFRAAAINGDVPQKLREKTVENLRAGRVDVLVA 354
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIE 474
T+VAARGLD+ + + + P D E+Y+HR GRTGRAG +G AV+ PR + + IE
Sbjct: 355 TDVAARGLDVERISHVYNYDIPMDTESYVHRIGRTGRAGRSGEAVLFVTPRERRMLRSIE 414
Query: 475 RESGVKFEHISAPQPADIAKAAGVEAAETITQV-SDSVIPAFKSAAEELLNNSGLSAAEL 533
+ + K E ++ P AD+ A AE IT D I ++ L ++ E+
Sbjct: 415 KATRQKVEQMAMPTIADVNAARSRRFAERITAARQDGQIDQYREVVSSYLAEHDVTGEEV 474
Query: 534 LAKALA 539
A +A
Sbjct: 475 AAALVA 480
>gi|345876610|ref|ZP_08828376.1| thioesterase superfamily protein [endosymbiont of Riftia pachyptila
(vent Ph05)]
gi|344226322|gb|EGV52659.1| thioesterase superfamily protein [endosymbiont of Riftia pachyptila
(vent Ph05)]
Length = 628
Score = 261 bits (668), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 155/383 (40%), Positives = 219/383 (57%), Gaps = 22/383 (5%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ + L G ES PIQ + +L+G DL+G+A+TG GKT AF LP+L +
Sbjct: 18 LSEPIMQALADVGYESPSPIQQASIPPLLEGKDLLGQAQTGTGKTAAFALPLLSRI---- 73
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
S+KT P LVL PTRELA QV E Y + G +YGG PY Q +L
Sbjct: 74 -DLSRKT-----PQFLVLAPTRELAIQVAEAMQSYARHIKGFHVLPIYGGQPYDHQLRQL 127
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G+ VV+GTPGR+ DHI RG + L +L VLDEADEMLRMGF++DVE IL +
Sbjct: 128 RRGVQVVVGTPGRVMDHIRRGTLKLDNLDALVLDEADEMLRMGFIDDVEWILEQTPQTR- 186
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
Q LFSAT+PS ++ ++ + L +D I + K +T +R S + +
Sbjct: 187 -QIALFSATMPSIIRKVAQRHL-NDPTEIKIAA--KTSTATTIRQRYWQVSGLHKLDALT 242
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKF 410
I+ C S ++F TK + +LA+ L + AL+GDI Q QRE T+ F++G+
Sbjct: 243 RILECESFDA-MLVFVRTKIATVELAEKLEARGYASEALNGDIPQKQRERTVERFKAGRL 301
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 470
LVAT+VAARGLD+ + +I + P D E+Y+HR GRTGRAG TG A++ P++ +
Sbjct: 302 DILVATDVAARGLDVERISHVINYDIPYDTESYVHRIGRTGRAGRTGDAILFVSPKERRL 361
Query: 471 SK-IERESGVKFEHISAPQPADI 492
+ IER + E + P DI
Sbjct: 362 LRTIERATRQPIERMQMPSAGDI 384
>gi|78048530|ref|YP_364705.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|78036960|emb|CAJ24661.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
Length = 648
Score = 261 bits (668), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 160/390 (41%), Positives = 219/390 (56%), Gaps = 22/390 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G ES PIQA T +L G D++G+A+TG GKT AF
Sbjct: 20 ESSAPLLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 79
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 80 ALPVLSNADLHQVK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 129
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 130 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 189
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + Q LFSAT+P ++ I+ +LK D + + K S N+R
Sbjct: 190 EAVLKKL--PAQRQVALFSATMPPAIRRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYW 244
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK + +LA L A A++GD+QQ+ R
Sbjct: 245 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAR 303
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG G
Sbjct: 304 EKTIAQLKDGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGD 363
Query: 459 AVMLYDPR-KSSVSKIERESGVKFEHISAP 487
A++ PR K + IER + E + P
Sbjct: 364 AILFVTPREKGMLRSIERATRQPIEEMQLP 393
>gi|345862983|ref|ZP_08815196.1| DEAD/DEAH box helicase-like protein [endosymbiont of Tevnia
jerichonana (vent Tica)]
gi|345125866|gb|EGW55733.1| DEAD/DEAH box helicase-like protein [endosymbiont of Tevnia
jerichonana (vent Tica)]
Length = 606
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 155/383 (40%), Positives = 219/383 (57%), Gaps = 22/383 (5%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ + L G ES PIQ + +L+G DL+G+A+TG GKT AF LP+L +
Sbjct: 14 LSEPIMQALADVGYESPSPIQQASIPPLLEGKDLLGQAQTGTGKTAAFALPLLSRID--- 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
S+KT P LVL PTRELA QV E Y + G +YGG PY Q +L
Sbjct: 71 --LSRKT-----PQFLVLAPTRELAIQVAEAMQSYARHIKGFHVLPIYGGQPYDHQLRQL 123
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G+ VV+GTPGR+ DHI RG + L +L VLDEADEMLRMGF++DVE IL +
Sbjct: 124 RRGVQVVVGTPGRVMDHIRRGTLKLDNLDALVLDEADEMLRMGFIDDVEWILEQTPQTR- 182
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
Q LFSAT+PS ++ ++ + L +D I + K +T +R S + +
Sbjct: 183 -QIALFSATMPSIIRKVAQRHL-NDPTEIKIAA--KTSTATTIRQRYWQVSGLHKLDALT 238
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKF 410
I+ C S ++F TK + +LA+ L + AL+GDI Q QRE T+ F++G+
Sbjct: 239 RILECESFDA-MLVFVRTKIATVELAEKLEARGYASEALNGDIPQKQRERTVERFKAGRL 297
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 470
LVAT+VAARGLD+ + +I + P D E+Y+HR GRTGRAG TG A++ P++ +
Sbjct: 298 DILVATDVAARGLDVERISHVINYDIPYDTESYVHRIGRTGRAGRTGDAILFVSPKERRL 357
Query: 471 SK-IERESGVKFEHISAPQPADI 492
+ IER + E + P DI
Sbjct: 358 LRTIERATRQPIERMQMPSAGDI 380
>gi|451943907|ref|YP_007464543.1| hypothetical protein A605_05875 [Corynebacterium halotolerans YIM
70093 = DSM 44683]
gi|451903294|gb|AGF72181.1| hypothetical protein A605_05875 [Corynebacterium halotolerans YIM
70093 = DSM 44683]
Length = 697
Score = 261 bits (667), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 149/385 (38%), Positives = 226/385 (58%), Gaps = 22/385 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +++DG D+VG A+TG GKT AF LP+L + R+
Sbjct: 102 GYETPSPIQAETIPVLMDGRDVVGLAQTGTGKTAAFALPVLARIDVAE----------RS 151
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV + F + +G + +YGG Y Q L++G +++GTPG
Sbjct: 152 PQALVLAPTRELALQVADAFQSFADHLGDIHVLPIYGGQAYGIQLSGLRRGAQIIVGTPG 211
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+E+G++D+S+L+F VLDEADEML MGF EDVE IL D +V LFSAT+P+
Sbjct: 212 RVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILADTPDEKQVA--LFSATMPN 269
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ IS ++L +D + I + + + +TN+ L + + I I+
Sbjct: 270 GIRRISKQYL-NDPREITV--KSETRTNTNITQRYLHVAHRNKLDAITRILEVTEFDA-M 325
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK ++A+ L A A++GDI Q+QRE T+ ++G+ LVAT+VAARG
Sbjct: 326 IVFVRTKHETEEIAEKLRARGFSAAAINGDIAQNQRERTVDQLKNGRLDILVATDVAARG 385
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKF 481
LD+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR + ++ IER +
Sbjct: 386 LDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLNSIERATNAPL 445
Query: 482 EHISAPQPADIAKAAGVEAAETITQ 506
+ + P D+ +A + A++ITQ
Sbjct: 446 DEMELPSVEDVNEARKAKFADSITQ 470
>gi|33865454|ref|NP_897013.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. WH 8102]
gi|33632623|emb|CAE07435.1| probable ATP-dependent RNA helicase DeaD [Synechococcus sp. WH
8102]
Length = 598
Score = 261 bits (667), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 159/381 (41%), Positives = 219/381 (57%), Gaps = 24/381 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F S L + L KG PIQ F ++ G DLVG+A+TG GKT AF LP+LE L +
Sbjct: 50 FGFSEALLKTLADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLAS 109
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY-GGAVGLTSCCLYGGAPYHAQEF 232
G +KT P LVL PTRELA QV + F Y G L +YGG + +Q
Sbjct: 110 G-----QKT-----PQALVLAPTRELAMQVADSFKAYSAGHPHLKVLAVYGGTDFRSQIN 159
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G+DVV+GTPGR+ DH+ +G +D S L+ VLDEADEMLRMGF++DVE IL ++
Sbjct: 160 TLRRGVDVVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILEQL--P 217
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS-Q 351
+ Q +LFSAT+P ++ +S ++LK D + + ++ R I +P + Q
Sbjct: 218 QERQVVLFSATMPPEIRRLSKRYLK-DPAEVTIRTKDQEGKRIRQRSITVPMPHKLEALQ 276
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQREVTLAGFRS 407
+ D C G IIF TK +A+ L L+GD+ Q+QRE T+ RS
Sbjct: 277 RVLDA--CGGEG--VIIFARTKAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRS 332
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR- 466
G LVAT+VAARGLD++ + L+I + P D EAY+HR GRTGRAG TG AV+ PR
Sbjct: 333 GSVDILVATDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFVTPRE 392
Query: 467 KSSVSKIERESGVKFEHISAP 487
+ ++ +ER +G E + P
Sbjct: 393 RRFINNLERATGQPIEAMEVP 413
>gi|427400888|ref|ZP_18892126.1| hypothetical protein HMPREF9710_01722 [Massilia timonae CCUG 45783]
gi|425720067|gb|EKU82993.1| hypothetical protein HMPREF9710_01722 [Massilia timonae CCUG 45783]
Length = 609
Score = 261 bits (667), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 169/436 (38%), Positives = 244/436 (55%), Gaps = 24/436 (5%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S +S P+ + LK G E+ PIQA T ++L+G D++G+A+TG GKT AF LPIL ++
Sbjct: 10 SDLNLSAPVLKALKDVGYETPSPIQAATIPLLLEGRDVLGQAQTGTGKTAAFALPILSNI 69
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQ 230
KKT AP LVL PTRELA QV E F Y + G +YGG Y Q
Sbjct: 70 D------VKKT----APQALVLAPTRELAIQVAEAFQSYAAHIKGFHVLPIYGGQSYGPQ 119
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
L++G+ VV+GTPGR+ DHIE+G++DLS L VLDEADEMLRMGF++DVE IL +
Sbjct: 120 LSSLRRGVHVVVGTPGRVIDHIEKGSLDLSQLTTLVLDEADEMLRMGFIDDVEQILQQTP 179
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
+ QT LFSAT+P +K I+ +L+ D + + K + N++ + +
Sbjct: 180 EGR--QTTLFSATMPPAIKRIAKTYLR-DPAEVTVAA--KTGTADNIKQRYWLVAGMHKL 234
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFR 406
+ I+ G IIF TK +LA L A A++GD+ Q QRE T+ +
Sbjct: 235 DALTRILEAEPFDG-MIIFARTKLGTEELATKLQARGFAATAINGDMAQQQRERTIEQLK 293
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
+GK LVAT+VAARGLD+ + +I + P D E+Y HR GRTGRAG +G A++ PR
Sbjct: 294 NGKIDILVATDVAARGLDVERISHVINYDVPSDPESYTHRIGRTGRAGRSGDAILFITPR 353
Query: 467 KSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETI-TQVSDSVIPAFKSAAEELLN 524
+ + K IER + + P + + + I T +++ + F+S E++
Sbjct: 354 ERGLLKAIERATRQPVSPLELPTIKAVNEVRITRFKDQIRTTLAEGGLDVFRSLIEDIER 413
Query: 525 NSGLSAAELLAKALAK 540
+ + A + +A ALAK
Sbjct: 414 DDNVPAID-IAAALAK 428
>gi|289705043|ref|ZP_06501454.1| putative ATP-dependent RNA helicase DeaD [Micrococcus luteus SK58]
gi|289558206|gb|EFD51486.1| putative ATP-dependent RNA helicase DeaD [Micrococcus luteus SK58]
Length = 715
Score = 261 bits (667), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 157/379 (41%), Positives = 219/379 (57%), Gaps = 16/379 (4%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQ T ++LDG D+VG A+TG GKT AF LP L L + + G P VLVL
Sbjct: 73 PIQEATIPLLLDGRDVVGLAQTGTGKTGAFALPALSRLA----ETTDVNGRADTPQVLVL 128
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSC-CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI 252
PTRELA QV + FD Y + S +YGG+PY Q L++G VV+GTPGR+ DH+
Sbjct: 129 APTRELALQVADAFDSYAKHLDDVSVLAVYGGSPYGPQLAGLRRGAQVVVGTPGRVIDHL 188
Query: 253 ERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 312
ERG++DLS L+ VLDEADEMLRMGF E+V+ IL D QT LFSAT+P ++ IS
Sbjct: 189 ERGSLDLSDLQTLVLDEADEMLRMGFAEEVDRILASTPDTK--QTALFSATMPPAIRRIS 246
Query: 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTET 372
++L + ++ V + ++T +R L + + + I+ G I F T
Sbjct: 247 AQYLNAPEEVA--VARQSTTSAT-IRQRYLQVGHQWKFEALSRILETEEHDG-VIAFVRT 302
Query: 373 KESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV 428
+ +LA L A A+ GDI Q QRE T+ ++G+ LVAT+VAARGLD+ +
Sbjct: 303 RAGTEELAQKLTRAGFKAVAISGDIAQKQREKTVEDLKAGRVDILVATDVAARGLDVERI 362
Query: 429 QLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAP 487
++ + P+D E+Y+HR GRTGRAG G AV+ PR+ + K IER + + E ++ P
Sbjct: 363 SHVVNYDIPQDAESYVHRIGRTGRAGRQGDAVLFMTPRERFLLKQIERTTRQQVEEMAVP 422
Query: 488 QPADIAKAAGVEAAETITQ 506
AD+ A A+ IT+
Sbjct: 423 SVADVNAARKRRFADGITR 441
>gi|88704236|ref|ZP_01101950.1| ATP-dependent RNA helicase DEAD/DEAH box [Congregibacter litoralis
KT71]
gi|88701287|gb|EAQ98392.1| ATP-dependent RNA helicase DEAD/DEAH box [Congregibacter litoralis
KT71]
Length = 604
Score = 261 bits (667), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 173/433 (39%), Positives = 237/433 (54%), Gaps = 43/433 (9%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
++ V L + L G E+ IQ MT +L+G DLVG+A+TG GKT AF LPIL L
Sbjct: 13 LQLPVFLMKALSDVGYETPSAIQTMTIPPLLEGKDLVGQAQTGTGKTAAFALPILARLD- 71
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPYHAQEF 232
K +K P LVL PTRELA QV E F Y + G +YGG+ Y Q
Sbjct: 72 --AKLAK-------PQALVLAPTRELAIQVAEAFQKYARHSKGFKVLPIYGGSDYRTQLR 122
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
+L++G+ V++GTPGR+ DH+ RG++DLS+LK VLDEADEMLRMGF++DVE IL +
Sbjct: 123 QLQRGVHVIVGTPGRVMDHMRRGSLDLSALKTLVLDEADEMLRMGFIDDVEWILEQTPPE 182
Query: 293 NKVQTLLFSATLPSWVKHISTKFL-KSDKKTIDLVGNEKMKASTN--VRHIVLPCSSSAR 349
Q LFSAT+P ++ I+ + L K ++ TI K+K TN +R V +
Sbjct: 183 R--QIALFSATMPDAIRRIAQQHLSKPEEITI------KLKTVTNASIRQRVWMMGGMHK 234
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGF 405
+ I+ + G IIF T+ + +LAD L G AL+GDI Q+ RE T+
Sbjct: 235 LDALTRILETEDTDG-IIIFVRTRIATQELADKLAARGYGTAALNGDIPQNLREKTVENL 293
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
+ G LVAT+VAARGLD+ + +I + P D EAY+HR GRTGRAG TG A++
Sbjct: 294 KKGALDILVATDVAARGLDVERISHVINYDIPNDPEAYVHRIGRTGRAGRTGEAILFAAN 353
Query: 466 RKSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLN 524
R+ + + IER +G K E + P T QVSD FK+ E L+
Sbjct: 354 RERRLLRTIERVTGQKIESMELP---------------TSEQVSDKRAARFKARITETLD 398
Query: 525 NSGLSAAELLAKA 537
+A L ++
Sbjct: 399 TQDRESARALVES 411
>gi|383316474|ref|YP_005377316.1| DNA/RNA helicase [Frateuria aurantia DSM 6220]
gi|379043578|gb|AFC85634.1| DNA/RNA helicase, superfamily II [Frateuria aurantia DSM 6220]
Length = 603
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 161/422 (38%), Positives = 229/422 (54%), Gaps = 41/422 (9%)
Query: 117 SVPLR----EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT 172
++PLR + L+ G ES PIQ+ T +L+G D++G+A+TG GKT AF LP+L +
Sbjct: 17 ALPLRPEILQALREVGYESPSPIQSATIPPLLEGRDVLGQAQTGTGKTAAFALPVLSRIE 76
Query: 173 NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQE 231
K P LVL PTRELA QV E F Y + G +YGG Y Q
Sbjct: 77 RDSNK----------PQALVLAPTRELAIQVAEAFQRYAAHMPGFHILPIYGGQSYGPQL 126
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
L++G+ V++GTPGR+ DH+ RG++DLS LKF VLDEADEMLRMGF++DVE +L
Sbjct: 127 QALRRGVQVIVGTPGRVIDHLTRGSLDLSELKFLVLDEADEMLRMGFIDDVEKVLEATPP 186
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
+V LFSAT+PS ++ I+ + LK+ +++ +TN+R S +
Sbjct: 187 TRQVA--LFSATMPSQIRKIAQQHLKT---PVEVTIKAATSTNTNIRQRYWWVSGLHKLD 241
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407
+ I+ S I+F TK++ +L++ L A A++GDI Q QRE + +
Sbjct: 242 AMTRILEAESFDA-MIVFARTKQATEELSERLQARGFAAAAINGDIAQPQRERVIQQLKD 300
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR- 466
GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR
Sbjct: 301 GKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVTPRE 360
Query: 467 KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNS 526
K + IER + E + P TI V+D + FK E L
Sbjct: 361 KGMLRAIERATRQPIEEMKLP---------------TIEAVNDRRVNRFKDRITETLGLD 405
Query: 527 GL 528
GL
Sbjct: 406 GL 407
>gi|297625843|ref|YP_003687606.1| hypothetical protein PFREUD_06320 [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296921608|emb|CBL56162.1| Hypothetical protein PFREUD_06320 [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 1043
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 172/488 (35%), Positives = 274/488 (56%), Gaps = 38/488 (7%)
Query: 11 EVKDEKKMNKKMALKDFEE--TEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETS 68
E + +N + A + EE + ++ E+++D+ ++++ S + + +E SE +
Sbjct: 507 EQANSDNVNPEHANPENEEIVNQTSVAEQATDESAAEQQASVTQNTDQPAIDESTTSEPA 566
Query: 69 SELGEPVNLKSEKEKKKKKKAKVE-PEAGVEEQERGESE-----HPNAVSRFR---ISVP 119
+ G P + + ++++ A+ E P V +ER + +RF + P
Sbjct: 567 T--GRPDDAPATANRRRESNARTEHPHGAVRREERDDDRVEPVRRQKGRTRFSELGVPQP 624
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+ E+L S+GI + FPIQ L G D++GR +TG GKTLAF +P++ L A+
Sbjct: 625 IVEELDSQGILAPFPIQQAAIPDALSGRDVLGRGQTGSGKTLAFGIPVITRL------AA 678
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
TG+GR P L++ PTRELA+QV++ A+GL++ + GG Y Q L++G+D
Sbjct: 679 SGTGHGRQPRALLMAPTRELAQQVNDVLFPLAKAMGLSTILVAGGMSYTPQLRALERGVD 738
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
+V+ TPGR+ D IERG+ L ++ VLDEADEM MGF+ DV IL ++ + + Q LL
Sbjct: 739 IVVATPGRLIDLIERGSAKLGEVQEVVLDEADEMADMGFMPDVTRILDEI--SREAQHLL 796
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLV--GNEKMKAS-TNVRHIVLPCSSSARSQVIPDI 356
FSATL V I +++ D V G + KAS T +RH + ++ ++ + I
Sbjct: 797 FSATLDRQVDTIVRRYMH------DPVEHGVDSAKASVTTMRHELWTVNARDKAAI---I 847
Query: 357 IRCYSSGGRTIIFTETK----ESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMT 412
+ + GRT++F T+ +A QL DL A ALHG + Q R L FR G+
Sbjct: 848 AQAANRPGRTLVFVRTQRDADRTAEQLRDLGLMAGALHGGLPQGMRARVLYAFRQGRVPV 907
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVS 471
LVAT+VAARG+D++DV L++Q +PP D + Y+HR+GRT RAG G+ L PR + ++
Sbjct: 908 LVATDVAARGIDVDDVSLVLQADPPHDSKDYLHRAGRTARAGEDGLVATLVLPRARGRMA 967
Query: 472 KIERESGV 479
+I R++GV
Sbjct: 968 RIMRDAGV 975
>gi|429729511|ref|ZP_19264170.1| cold-shock DEAD-box protein A [Corynebacterium durum F0235]
gi|429149535|gb|EKX92513.1| cold-shock DEAD-box protein A [Corynebacterium durum F0235]
Length = 677
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 153/397 (38%), Positives = 229/397 (57%), Gaps = 23/397 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +++DG D+VG A+TG GKT AF LPIL S+ RA
Sbjct: 88 GFETPSPIQAHTIPVLMDGHDVVGLAQTGTGKTAAFALPIL----------SRIDPSVRA 137
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV + F + +G L +YGG Y Q L++G +V+GTPG
Sbjct: 138 PQALVLAPTRELALQVADSFQAFADHLGSLNVLPIYGGQAYGIQLSGLRRGAHIVVGTPG 197
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+E+G++D+S L+F VLDEADEML MGF EDVE IL D +V LFSAT+PS
Sbjct: 198 RVIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDTPDDKQVA--LFSATMPS 255
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ +S ++LK ++ + + + +TN+ L + + + I+
Sbjct: 256 AIRRMSKQYLKDPRE---ITVKSETRTNTNITQKFLNVAHRNKLDALTRILEVTEFAA-M 311
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK +LA+ L A A++GDI Q+QRE T+ + G+ LVAT+VAARG
Sbjct: 312 IMFVRTKHETEELAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 371
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKF 481
LD+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR + + IER +
Sbjct: 372 LDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNATL 431
Query: 482 EHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKS 517
+ P ++ ++ + A++IT+ + D+ I F++
Sbjct: 432 VEMELPTVDEVNESRKEKFADSITESLEDNQISVFRN 468
>gi|71731612|gb|EAO33673.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
N-terminal [Xylella fastidiosa Ann-1]
Length = 609
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 153/366 (41%), Positives = 213/366 (58%), Gaps = 22/366 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +L G D++G+A+TG GKT AF LP+L K
Sbjct: 28 GYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTRTVLNQVK---------- 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F Y ++ G +YGG Y Q LK+G+ V++GTPG
Sbjct: 78 PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKRGVHVIVGTPG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+ERG +DLS LK VLDEADEMLRMGF+EDVE +L K+ + +V LFSAT+P
Sbjct: 138 RVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVA--LFSATMPP 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ I+ +L+ I++ K + N+R S + + I+ +
Sbjct: 196 QIRRIAQTYLQD---PIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVETFDA-M 251
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK + +LA+ L A A++GD+QQ+QRE T+ + GK LVAT+VAARG
Sbjct: 252 IIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKF 481
LD+ + ++ + P DVE+Y+HR GRTGRAG +G A++ PR K + +IER +
Sbjct: 312 LDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQIERATHQPI 371
Query: 482 EHISAP 487
E + P
Sbjct: 372 EAMQLP 377
>gi|427391479|ref|ZP_18885885.1| hypothetical protein HMPREF9233_01388 [Actinobaculum massiliae
ACS-171-V-Col2]
gi|425732122|gb|EKU94934.1| hypothetical protein HMPREF9233_01388 [Actinobaculum massiliae
ACS-171-V-Col2]
Length = 567
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 150/361 (41%), Positives = 211/361 (58%), Gaps = 17/361 (4%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F +S + L +GI FPIQA+T + LD D++G+A+TG GKTL F +P+LE+ T
Sbjct: 35 FGVSEEVTRALADEGIIHPFPIQALTLPVALDRHDIIGQAKTGTGKTLGFGIPMLEN-TI 93
Query: 174 GPTKAS------KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
GP + K G P L +LPTRELAKQV + + + +YGG Y
Sbjct: 94 GPGEEGWEKIPEKNQGL---PQGLAILPTRELAKQVANELRMAAAHRSVRIVDIYGGRAY 150
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q+ L++G ++V+GTPGRI D + G++ L +K VLDEADEML +GF+EDVE IL
Sbjct: 151 EPQQEALRRGAEIVVGTPGRIIDLMRHGSLRLDHVKTLVLDEADEMLDLGFLEDVETILS 210
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
+V + + T+LFSAT+P V ++ +++ + N+R IV +
Sbjct: 211 RVPE--RRHTMLFSATMPGPVISMARRYMSKPTHIRASAPGDDTHTVKNIRQIVYRAHAL 268
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLA 403
+ +VI I++ GRT+IFT TK SA++LA+ L ALHGD+ Q RE L
Sbjct: 269 NKDEVIARILQARGR-GRTLIFTRTKRSAARLAEDLERRGFATGALHGDLGQGAREQALH 327
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
FR+GK LVAT+VAARG+D++DV +I + P D + Y+HR GRTGRAGN G AV
Sbjct: 328 AFRNGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNKGTAVTFV 387
Query: 464 D 464
D
Sbjct: 388 D 388
>gi|417559517|ref|ZP_12210424.1| Superfamily II DNA and RNA helicase [Xylella fastidiosa EB92.1]
gi|338177845|gb|EGO80883.1| Superfamily II DNA and RNA helicase [Xylella fastidiosa EB92.1]
Length = 609
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 153/366 (41%), Positives = 213/366 (58%), Gaps = 22/366 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +L G D++G+A+TG GKT AF LP+L K
Sbjct: 28 GYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTRTVLNQVK---------- 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F Y ++ G +YGG Y Q LK+G+ V++GTPG
Sbjct: 78 PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKRGVHVIVGTPG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+ERG +DLS LK VLDEADEMLRMGF+EDVE +L K+ + +V LFSAT+P
Sbjct: 138 RVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVA--LFSATMPP 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ I+ +L+ I++ K + N+R S + + I+ +
Sbjct: 196 QIRRIAQTYLQD---PIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVETFDA-M 251
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK + +LA+ L A A++GD+QQ+QRE T+ + GK LVAT+VAARG
Sbjct: 252 IIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKF 481
LD+ + ++ + P DVE+Y+HR GRTGRAG +G A++ PR K + +IER +
Sbjct: 312 LDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQIERATHQPI 371
Query: 482 EHISAP 487
E + P
Sbjct: 372 EAMQLP 377
>gi|28198133|ref|NP_778447.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
gi|28056193|gb|AAO28096.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
Length = 615
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 153/366 (41%), Positives = 213/366 (58%), Gaps = 22/366 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +L G D++G+A+TG GKT AF LP+L K
Sbjct: 34 GYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTRTVLNQVK---------- 83
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F Y ++ G +YGG Y Q LK+G+ V++GTPG
Sbjct: 84 PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKRGVHVIVGTPG 143
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+ERG +DLS LK VLDEADEMLRMGF+EDVE +L K+ + +V LFSAT+P
Sbjct: 144 RVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVA--LFSATMPP 201
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ I+ +L+ I++ K + N+R S + + I+ +
Sbjct: 202 QIRRIAQTYLQD---PIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVETFDA-M 257
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK + +LA+ L A A++GD+QQ+QRE T+ + GK LVAT+VAARG
Sbjct: 258 IIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAARG 317
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKF 481
LD+ + ++ + P DVE+Y+HR GRTGRAG +G A++ PR K + +IER +
Sbjct: 318 LDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQIERATHQPI 377
Query: 482 EHISAP 487
E + P
Sbjct: 378 EAMQLP 383
>gi|182680762|ref|YP_001828922.1| DEAD/DEAH box helicase [Xylella fastidiosa M23]
gi|386084282|ref|YP_006000564.1| DEAD/DEAH box helicase domain-containing protein [Xylella
fastidiosa subsp. fastidiosa GB514]
gi|182630872|gb|ACB91648.1| DEAD/DEAH box helicase domain protein [Xylella fastidiosa M23]
gi|307579229|gb|ADN63198.1| DEAD/DEAH box helicase domain-containing protein [Xylella
fastidiosa subsp. fastidiosa GB514]
Length = 609
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 153/366 (41%), Positives = 213/366 (58%), Gaps = 22/366 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +L G D++G+A+TG GKT AF LP+L K
Sbjct: 28 GYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTRTVLNQVK---------- 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F Y ++ G +YGG Y Q LK+G+ V++GTPG
Sbjct: 78 PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKRGVHVIVGTPG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+ERG +DLS LK VLDEADEMLRMGF+EDVE +L K+ + +V LFSAT+P
Sbjct: 138 RVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVA--LFSATMPP 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ I+ +L+ I++ K + N+R S + + I+ +
Sbjct: 196 QIRRIAQTYLQD---PIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVETFDA-M 251
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK + +LA+ L A A++GD+QQ+QRE T+ + GK LVAT+VAARG
Sbjct: 252 IIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKF 481
LD+ + ++ + P DVE+Y+HR GRTGRAG +G A++ PR K + +IER +
Sbjct: 312 LDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQIERATHQPI 371
Query: 482 EHISAP 487
E + P
Sbjct: 372 EAMQLP 377
>gi|227542566|ref|ZP_03972615.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51866]
gi|227181764|gb|EEI62736.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51866]
Length = 718
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 155/403 (38%), Positives = 229/403 (56%), Gaps = 23/403 (5%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E +K G E+ PIQA T +LDG D+VG A+TG GKT AF LPI+ +
Sbjct: 123 EAVKKVGFETPSPIQARTIPALLDGRDVVGLAQTGTGKTAAFALPIIARIDKS------- 175
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDV 240
R+P LVL PTRELA QV + F + VG + +YGG Y Q L++G +
Sbjct: 176 ---NRSPQALVLAPTRELALQVADAFQEFADHVGGINVLPIYGGQAYGIQLSGLRRGAHI 232
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
++GTPGR+ DH+++G++D+S L + VLDEADEML MGF EDVE IL D K Q LF
Sbjct: 233 IVGTPGRVIDHLKKGSLDISHLDYLVLDEADEMLNMGFQEDVERILEDTPD--KKQVALF 290
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P+ ++ +S ++L ++ + + +TN+ L + + + I+
Sbjct: 291 SATMPNAIRRLSQQYLDD---PYEVTVKAETRTNTNISQRYLNVAHRNKLDALTRILEVT 347
Query: 361 SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
IIF TK +LA+ L A+A++GDI Q QRE T+ R G+ LVAT
Sbjct: 348 EFEA-MIIFVRTKYETEELAEKLRARGFSAQAINGDIAQQQRERTVDQLRDGRLDILVAT 406
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIER 475
+VAARGLD++ + ++ + P D E+YIHR GRTGRAG TG A++ PR + + IER
Sbjct: 407 DVAARGLDVDRISHVLNYDIPHDTESYIHRIGRTGRAGRTGEAILFVTPRERRMLRSIER 466
Query: 476 ESGVKFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKS 517
+ E + P ++ ++ + A++IT+ + DS + F+S
Sbjct: 467 VTNATLEEMQLPTVDEVNESRKEKFADSITEALEDSQLGLFRS 509
>gi|71276350|ref|ZP_00652627.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
N-terminal [Xylella fastidiosa Dixon]
gi|170729445|ref|YP_001774878.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
gi|71162812|gb|EAO12537.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
N-terminal [Xylella fastidiosa Dixon]
gi|71728863|gb|EAO31000.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
N-terminal [Xylella fastidiosa Ann-1]
gi|167964238|gb|ACA11248.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
Length = 609
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 153/366 (41%), Positives = 213/366 (58%), Gaps = 22/366 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +L G D++G+A+TG GKT AF LP+L K
Sbjct: 28 GYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTRTVLNQVK---------- 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F Y ++ G +YGG Y Q LK+G+ V++GTPG
Sbjct: 78 PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKRGVHVIVGTPG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+ERG +DLS LK VLDEADEMLRMGF+EDVE +L K+ + +V LFSAT+P
Sbjct: 138 RVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVA--LFSATMPP 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ I+ +L+ I++ K + N+R S + + I+ +
Sbjct: 196 QIRRIAQTYLQD---PIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVETFDA-M 251
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK + +LA+ L A A++GD+QQ+QRE T+ + GK LVAT+VAARG
Sbjct: 252 IIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKF 481
LD+ + ++ + P DVE+Y+HR GRTGRAG +G A++ PR K + +IER +
Sbjct: 312 LDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQIERATHQPI 371
Query: 482 EHISAP 487
E + P
Sbjct: 372 EAMQLP 377
>gi|227487924|ref|ZP_03918240.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51867]
gi|227092130|gb|EEI27442.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51867]
Length = 718
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 155/403 (38%), Positives = 229/403 (56%), Gaps = 23/403 (5%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E +K G E+ PIQA T +LDG D+VG A+TG GKT AF LPI+ +
Sbjct: 123 EAVKKVGFETPSPIQARTIPALLDGRDVVGLAQTGTGKTAAFALPIIARIDKS------- 175
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDV 240
R+P LVL PTRELA QV + F + VG + +YGG Y Q L++G +
Sbjct: 176 ---NRSPQALVLAPTRELALQVADAFQEFADHVGGINVLPIYGGQAYGIQLSGLRRGAHI 232
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
++GTPGR+ DH+++G++D+S L + VLDEADEML MGF EDVE IL D K Q LF
Sbjct: 233 IVGTPGRVIDHLKKGSLDISHLDYLVLDEADEMLNMGFQEDVERILEDTPD--KKQVALF 290
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P+ ++ +S ++L ++ + + +TN+ L + + + I+
Sbjct: 291 SATMPNAIRRLSQQYLDD---PYEVTVKAETRTNTNISQRYLNVAHRNKLDALTRILEVT 347
Query: 361 SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
IIF TK +LA+ L A+A++GDI Q QRE T+ R G+ LVAT
Sbjct: 348 EFEA-MIIFVRTKYETEELAEKLRARGFSAQAINGDIAQQQRERTVDQLRDGRLDILVAT 406
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIER 475
+VAARGLD++ + ++ + P D E+YIHR GRTGRAG TG A++ PR + + IER
Sbjct: 407 DVAARGLDVDRISHVLNYDIPHDTESYIHRIGRTGRAGRTGEAILFVTPRERRMLRSIER 466
Query: 476 ESGVKFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKS 517
+ E + P ++ ++ + A++IT+ + DS + F+S
Sbjct: 467 VTNATLEEMQLPTVDEVNESRKEKFADSITEALEDSQLGLFRS 509
>gi|116072449|ref|ZP_01469716.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
gi|116064971|gb|EAU70730.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
Length = 607
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 161/381 (42%), Positives = 219/381 (57%), Gaps = 24/381 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F S L + L KG PIQ F ++ G DLVG+A+TG GKT AF LP+LE L +
Sbjct: 62 FGFSEALLKTLAEKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLES 121
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPYHAQEF 232
G +KT P VLVL PTRELA QV + F Y G L +YGG + +Q
Sbjct: 122 G-----RKT-----PQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQIS 171
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G+DVV+GTPGR+ DH+ +G +D S L VLDEADEMLRMGF++DVE IL ++
Sbjct: 172 TLRRGVDVVVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQL--P 229
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS-Q 351
+ Q +LFSAT+P ++ +S ++L +D + + ++ R I +P S + Q
Sbjct: 230 KERQVVLFSATMPPEIRRLSKRYL-NDPAEVTIKTKDQDGKLIRQRAITVPMSHKLEALQ 288
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQREVTLAGFRS 407
+ D C G IIF TK +A+ L A L+GD+ Q+QRE T+ RS
Sbjct: 289 RVLDA--CGGEG--VIIFARTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRS 344
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR- 466
G LVAT+VAARGLD+ + L+I + P D EAY+HR GRTGRAG TG AV+ PR
Sbjct: 345 GSVDILVATDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFMTPRE 404
Query: 467 KSSVSKIERESGVKFEHISAP 487
+ + +ER +G E + P
Sbjct: 405 RRFIRNLERATGQPIELMEVP 425
>gi|427419103|ref|ZP_18909286.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 7375]
gi|425761816|gb|EKV02669.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 7375]
Length = 565
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 168/439 (38%), Positives = 239/439 (54%), Gaps = 26/439 (5%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S +S P+ + L+ G ES PIQA T VL G DL+G+A+TG GKT AF LP+L
Sbjct: 10 SELSLSEPVIKALEGLGYESPTPIQAQTIPHVLAGVDLIGQAQTGTGKTAAFALPLL--- 66
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQ 230
S+ R P LVL PTRELA QV E F Y + G LYGG Y Q
Sbjct: 67 -------SRVNIEQRLPHTLVLTPTRELAIQVAEAFQSYASHMKGFHVLPLYGGQSYSIQ 119
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
KL++ + +V+GTPGR+ DH++RG +DLS+L+ VLDEADEMLRMGF++DVE +L K
Sbjct: 120 LRKLERSVHIVVGTPGRVMDHMKRGTLDLSALQCLVLDEADEMLRMGFIDDVEWVLEKTP 179
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
+ +V LFSATLP ++HI+ + L + +++ K + +R S +
Sbjct: 180 ASRQVA--LFSATLPKEIRHIAQRHLNN---PTEVLIKSKTSTADTIRQRYWMVSGYHKL 234
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARA-----LHGDIQQSQREVTLAGF 405
+ I+ + G I+F T+ + +LA+ L AR L GDI Q QRE T+
Sbjct: 235 DALTRILETETFDG-MIVFVRTRLATVELAEKLE-ARGYETAPLSGDISQMQRERTVEQL 292
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
+SGK +VAT+VAARGLD++ + +I + P D E Y+HR GRTGRAG G A++ P
Sbjct: 293 KSGKLDIVVATDVAARGLDVDRISHVINYDMPYDTETYVHRVGRTGRAGRNGEAILFVAP 352
Query: 466 R-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKSAAEELL 523
R + + IER + K + P + + IT +++ + F + E+
Sbjct: 353 RERRLLHAIERATKQKISKMEMPTTEMVNNKRIARFKQQITDTIAEENLEFFNNLMEQYE 412
Query: 524 NNSGLSAAELLAKALAKAV 542
+ A E +A ALAK V
Sbjct: 413 QEHNVPAIE-IAAALAKLV 430
>gi|15836857|ref|NP_297545.1| ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
gi|9105065|gb|AAF83065.1|AE003878_13 ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
Length = 614
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 153/366 (41%), Positives = 213/366 (58%), Gaps = 22/366 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +L G D++G+A+TG GKT AF LP+L K
Sbjct: 34 GYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTRTVLNQVK---------- 83
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F Y ++ G +YGG Y Q LK+G+ V++GTPG
Sbjct: 84 PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKRGVHVIVGTPG 143
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+ERG +DLS LK VLDEADEMLRMGF+EDVE +L K+ + +V LFSAT+P
Sbjct: 144 RVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVA--LFSATMPP 201
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ I+ +L+ I++ K + N+R S + + I+ +
Sbjct: 202 QIRRIAQTYLQD---PIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVETFDA-M 257
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK + +LA+ L A A++GD+QQ+QRE T+ + GK LVAT+VAARG
Sbjct: 258 IIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAARG 317
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKF 481
LD+ + ++ + P DVE+Y+HR GRTGRAG +G A++ PR K + +IER +
Sbjct: 318 LDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQIERATHQPI 377
Query: 482 EHISAP 487
E + P
Sbjct: 378 EAMQLP 383
>gi|317970363|ref|ZP_07971753.1| superfamily II DNA/RNA helicase [Synechococcus sp. CB0205]
Length = 598
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 156/389 (40%), Positives = 227/389 (58%), Gaps = 24/389 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F S + E L+ G PIQA ++ G DLVG+A+TG GKT AF LP+L +L
Sbjct: 36 FGFSPEILEALEEIGYSEPSPIQAAAIPELMLGRDLVGQAQTGTGKTAAFALPMLAALDE 95
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEF 232
R P VLVL PTRELA QV + F Y + L +YGG+ + Q
Sbjct: 96 ----------TQRTPQVLVLTPTRELAIQVADSFKSYATKLPHLRVLPVYGGSDFRDQIH 145
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
KLK+G+ VV+GTPGR+ DH+ +G +D+S L+ VLDEADEMLRMGF++DVE +L ++ +
Sbjct: 146 KLKRGVQVVVGTPGRVMDHMRQGTLDVSGLRSLVLDEADEMLRMGFIDDVEWVLSQLPE- 204
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKK-TIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
K Q +LFSAT+PS ++ IS ++L S + TI G++ S+ ++ + + + +
Sbjct: 205 -KRQVVLFSATMPSEIRRISHQYLNSPAEITIKTKGSD----SSRIQQRFITVNGPMKLE 259
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407
+ ++ + G IIF TK +A+ L G L+GD+ QSQRE T+ ++
Sbjct: 260 ALSRVLEAETKEG-VIIFARTKAITVTVAEALEAKGYGVAVLNGDVAQSQRERTIERLKN 318
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR- 466
G LVAT+VAARGLD++ + L+I + P D EAY+HR GRTGRAG TG A++ PR
Sbjct: 319 GTVDVLVATDVAARGLDVDRISLVINYDIPFDSEAYVHRIGRTGRAGRTGNAILFVTPRE 378
Query: 467 KSSVSKIERESGVKFEHISAPQPADIAKA 495
+ ++ +ER G E + P A I ++
Sbjct: 379 RRFITGLERAVGRPIEPMEIPTNASINQS 407
>gi|72382486|ref|YP_291841.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Prochlorococcus marinus str. NATL2A]
gi|72002336|gb|AAZ58138.1| ATP-dependent RNA helicase CsdA [Prochlorococcus marinus str.
NATL2A]
Length = 589
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 158/385 (41%), Positives = 217/385 (56%), Gaps = 22/385 (5%)
Query: 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
N S F S L + + KG S PIQ +L G DLVG+A+TG GKT AF LPIL
Sbjct: 36 NGFSEFNFSEELIQTISDKGYSSPTPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPIL 95
Query: 169 ESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY-GGAVGLTSCCLYGGAPY 227
E L K G+ P VLVL PTRELA QV E F Y G +YGG+ +
Sbjct: 96 ERL-------KKNVGH---PQVLVLAPTRELAMQVAESFRTYSAGHPHFKVLAIYGGSDF 145
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q L++G+DVV+GTPGR+ DH+ + ++ S L VLDEADEMLRMGF++DVE IL
Sbjct: 146 RNQINTLRRGVDVVVGTPGRVMDHMRQKTLNTSHLSCLVLDEADEMLRMGFIDDVEWILE 205
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
++ + Q +LFSAT+PS ++ +S K+L S + + ++K +R + +
Sbjct: 206 QLPEER--QLVLFSATMPSEIRRLSKKYLNSPAEIT--IKATELKERL-IRQRYISVQNV 260
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLA 403
+ + ++ S G IIF TK +A+ L L+GDI Q+QRE T+
Sbjct: 261 YKVNALQRVLEAVSEEG-VIIFARTKAITIVVAEKLESYGYNVAVLNGDIPQNQRERTVE 319
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
R G LVAT+VAARGLD++ + L+I + P D EAY+HR GRTGRAG G A++
Sbjct: 320 RLRQGSINILVATDVAARGLDVDRIGLVINYDMPFDREAYVHRIGRTGRAGRNGEAILFV 379
Query: 464 DPR-KSSVSKIERESGVKFEHISAP 487
+PR +S +S +ER G E + P
Sbjct: 380 NPRERSFLSNLERAVGQPIEKMDIP 404
>gi|124026185|ref|YP_001015301.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. NATL1A]
gi|123961253|gb|ABM76036.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
NATL1A]
Length = 589
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 158/385 (41%), Positives = 217/385 (56%), Gaps = 22/385 (5%)
Query: 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
N S F S L + + KG S PIQ +L G DLVG+A+TG GKT AF LPIL
Sbjct: 36 NGFSEFNFSEELIQTISDKGYSSPTPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPIL 95
Query: 169 ESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY-GGAVGLTSCCLYGGAPY 227
E L K G+ P VLVL PTRELA QV E F Y G +YGG+ +
Sbjct: 96 ERL-------KKNVGH---PQVLVLAPTRELAMQVAESFRTYSAGHPHFKVLAIYGGSDF 145
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q L++G+DVV+GTPGR+ DH+ + ++ S L VLDEADEMLRMGF++DVE IL
Sbjct: 146 RNQINTLRRGVDVVVGTPGRVMDHMRQKTLNTSHLSCLVLDEADEMLRMGFIDDVEWILE 205
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
++ + Q +LFSAT+PS ++ +S K+L S + + ++K +R + +
Sbjct: 206 QLPEER--QLVLFSATMPSEIRRLSKKYLNSPAEIT--IKATELKERL-IRQRYISVQNV 260
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLA 403
+ + ++ S G IIF TK +A+ L L+GDI Q+QRE T+
Sbjct: 261 YKVNALQRVLEAVSEEG-VIIFARTKAITIVVAEKLESYGYNVAVLNGDIPQNQRERTVE 319
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
R G LVAT+VAARGLD++ + L+I + P D EAY+HR GRTGRAG G A++
Sbjct: 320 RLRQGSINILVATDVAARGLDVDRIGLVINYDMPFDREAYVHRIGRTGRAGRNGEAILFV 379
Query: 464 DPR-KSSVSKIERESGVKFEHISAP 487
+PR +S +S +ER G E + P
Sbjct: 380 NPRERSFLSNLERAVGQPIEKMDIP 404
>gi|308178183|ref|YP_003917589.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
gi|307745646|emb|CBT76618.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
Re117]
Length = 642
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 150/354 (42%), Positives = 207/354 (58%), Gaps = 25/354 (7%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL-----TNGPTKA 178
L G E PIQA T ++L+G D+VG A+TG GKT AF LP L + TNGP K
Sbjct: 35 LADLGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFALPALSRMAELADTNGPAKT 94
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKG 237
P +LVL PTRELA QV E F Y + T +YGG+PY Q L++G
Sbjct: 95 ---------PQILVLAPTRELALQVAEAFTSYAKYLPNFTVLPVYGGSPYGPQLNGLRRG 145
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
VV+GTPGR+ DHI +G++DLS+L++ VLDEADEMLRMGF E+V+ IL + +V
Sbjct: 146 AQVVVGTPGRVIDHINKGSLDLSNLQYVVLDEADEMLRMGFAEEVDKILEATPEDKQVA- 204
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P ++ I++++L++ + ++ K TN+ L + + + I+
Sbjct: 205 -LFSATMPRTIRRIASEYLRNPQ---EVAVKSKQSTGTNITQRYLQVMGAHKLDAMTRIL 260
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
+ G I F TK + LAD L A A++GDI Q QRE T+ RSGK L
Sbjct: 261 ESETFEG-VIAFVRTKMATEDLADKLKARGFTAAAINGDIPQQQRERTIENLRSGKIDIL 319
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK 467
VAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG G A++ PR+
Sbjct: 320 VATDVAARGLDVERISHVVNFDIPHDTESYVHRIGRTGRAGRKGDAILFMTPRE 373
>gi|420151175|ref|ZP_14658314.1| DEAD/DEAH box helicase, partial [Actinomyces georgiae F0490]
gi|394772388|gb|EJF51653.1| DEAD/DEAH box helicase, partial [Actinomyces georgiae F0490]
Length = 535
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 156/395 (39%), Positives = 230/395 (58%), Gaps = 24/395 (6%)
Query: 93 PEAGVEEQERGESEHPN-AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVG 151
PEA + ERG+ + + + F ++ P+ + L+ +GI FPIQA+T LD D++G
Sbjct: 43 PEATPDISERGDEDFSRKSFADFGVTDPIVDALEDQGITHPFPIQALTLGPALDRHDIIG 102
Query: 152 RARTGQGKTLAFVLPILESLTNGPTKASKKTGYG-----RAPSVLVLLPTRELAKQVHED 206
+A+TG GKTL F +P+LE + A + G+ P L++LPTREL+KQV D
Sbjct: 103 QAKTGTGKTLGFGIPVLEDVI-----APDEPGFDDLLNPNNPQALIVLPTRELSKQVASD 157
Query: 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266
+ +YGG + Q LKKG DVV+GTPGR+ D + +G++ LS ++ V
Sbjct: 158 LRAAAKYLSTRIVEIYGGVAFEPQISALKKGADVVVGTPGRLIDLLRQGHLHLSGVETVV 217
Query: 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLV 326
LDEADEML +GF+ DVE +L +V + T+LFSAT+P V ++ KF++
Sbjct: 218 LDEADEMLDLGFLPDVETLLSRV--PSHRHTMLFSATMPGPVVALARKFMEHPTHIRAQD 275
Query: 327 GNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA 386
+++ + V+ +V S + +V+ I++ GR +IF TK +A++L + L A
Sbjct: 276 PDDQHQTVNTVKQVVYRVHSLNKVEVLARILQA-DGRGRAVIFCRTKRTAARLGEDL-AA 333
Query: 387 R-----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVE 441
R +LHGD+ Q RE L FR+GK LVAT+VAARG+D++DV +I + P D +
Sbjct: 334 RGFAVGSLHGDLGQGAREQALRAFRNGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEK 393
Query: 442 AYIHRSGRTGRAGNTGVAVMLYD----PRKSSVSK 472
YIHR GRTGRAGN+G AV D PR S +SK
Sbjct: 394 IYIHRIGRTGRAGNSGTAVTFVDWDDTPRWSLISK 428
>gi|336176951|ref|YP_004582326.1| DEAD/DEAH box helicase [Frankia symbiont of Datisca glomerata]
gi|334857931|gb|AEH08405.1| DEAD/DEAH box helicase domain protein [Frankia symbiont of Datisca
glomerata]
Length = 694
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 150/361 (41%), Positives = 213/361 (59%), Gaps = 22/361 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L++KGI S FPIQ +T + L GSD++G+ARTG GKTLAF +P+ + T S+
Sbjct: 52 EALRAKGIVSPFPIQELTLPLALAGSDIIGQARTGTGKTLAFGIPLAQQAT------SRD 105
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
G P LV++PTREL QV D D G GL +YGG Y Q L+ G+D+V
Sbjct: 106 EGASGQPQALVVVPTRELCLQVTADIDRAGSGRGLRVLPVYGGRAYEPQLASLRAGVDIV 165
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
+GTPGR+ D + + L++++ VLDEADEML +GF+ DVE IL ++ D QTLLFS
Sbjct: 166 VGTPGRLLDLARQNALVLTAVRMLVLDEADEMLDLGFLPDVERILAQLPDIR--QTLLFS 223
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSSSARSQVIPDIIRC 359
AT+P V ++ +F+ ++ + + + T ++ V + + +V+ +++
Sbjct: 224 ATMPPPVISLARRFM---RRPVHVTAEHPDEGRTVPDISQHVFRAHALDKIEVLARVLQA 280
Query: 360 YSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
G I+F T+ +A ++AD L G A A+HGDI Q QRE L FRSGK LVA
Sbjct: 281 EGR-GLAIVFVRTRRTADRVADDLTGRGFAAAAVHGDIGQGQREQALRAFRSGKIDVLVA 339
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PRKSSVS 471
T+VAARG+DI V ++ + P D Y+HR GRTGRAG +GVAV D PR S V+
Sbjct: 340 TDVAARGIDIGGVTHVVNYQCPEDENVYLHRVGRTGRAGGSGVAVTFVDWDDLPRWSLVN 399
Query: 472 K 472
+
Sbjct: 400 Q 400
>gi|407648258|ref|YP_006812017.1| ATP-dependent RNA helicase [Nocardia brasiliensis ATCC 700358]
gi|407311142|gb|AFU05043.1| ATP-dependent RNA helicase [Nocardia brasiliensis ATCC 700358]
Length = 593
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 162/397 (40%), Positives = 225/397 (56%), Gaps = 29/397 (7%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES PIQA T +L G+D+VG A+TG GKT AF +PIL L G+
Sbjct: 39 GYESPSPIQAATIPPLLSGADVVGLAQTGTGKTAAFAIPILMGLDTS----------GKL 88
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV E F Y + GL +YGG Y Q L++G VV+GTPG
Sbjct: 89 PQSLVLAPTRELAIQVAEAFGRYATHIPGLHVLPIYGGQAYGVQLSGLRRGAHVVVGTPG 148
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+E+G +DLS LK+ VLDEADEML+MGF EDVE IL K A K Q LFSAT+P+
Sbjct: 149 RVIDHLEKGTLDLSQLKYLVLDEADEMLKMGFQEDVERIL-KDTPAGK-QVALFSATMPA 206
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ IS ++L +++ K +TN+ + S + + I+ S
Sbjct: 207 AIRKISKQYLND---PVEITVKSKTSTATNITQRWVQVSHQRKLDALTRILEVESFEA-M 262
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK++ +LA+ L A A++GDI Q+QRE T+ +SG LVAT+VAARG
Sbjct: 263 IIFVRTKQATEELAEKLRARGFSAAAINGDIAQNQRERTIGHLKSGTLDILVATDVAARG 322
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKF 481
LD++ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + K IER +
Sbjct: 323 LDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGEALLFVAPRERHLLKSIERATRHPL 382
Query: 482 EHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSA 518
E + P D+ A+ + + D + + SA
Sbjct: 383 EEMQLPSVDDV-------NAQRVAKFGDDITESLTSA 412
>gi|320095784|ref|ZP_08027429.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 178
str. F0338]
gi|319977291|gb|EFW08989.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 178
str. F0338]
Length = 575
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 155/395 (39%), Positives = 231/395 (58%), Gaps = 24/395 (6%)
Query: 93 PEAGVEEQERGESEHPN-AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVG 151
PEA + ERG+ + + + F ++ P+ + L+ +GI FPIQA+T LD D++G
Sbjct: 61 PEATPDISERGDEDFSRKSFADFGVTDPIVDALEDQGITHPFPIQALTLGPALDRHDIIG 120
Query: 152 RARTGQGKTLAFVLPILESLTNGPTKASKKTGYG-----RAPSVLVLLPTRELAKQVHED 206
+A+TG GKTL F +P+LE + A + G+ +P L++LPTREL+KQV D
Sbjct: 121 QAKTGTGKTLGFGIPVLEDVI-----APDEPGFDDLLNPNSPQALIVLPTRELSKQVASD 175
Query: 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266
+ +YGG + Q LKKG DVV+GTPGR+ D + +G++ LS ++ V
Sbjct: 176 LRAAAKYLSTRIVEIYGGVAFEPQISALKKGADVVVGTPGRLIDLLRQGHLHLSGVETVV 235
Query: 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLV 326
LDEADEML +GF+ DVE +L +V + T+LFSAT+P V ++ KF++
Sbjct: 236 LDEADEMLDLGFLPDVETLLSRV--PSHRHTMLFSATMPGPVVALARKFMEHPTHIRAQD 293
Query: 327 GNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA 386
+++ + V+ +V S + +V+ I++ G R +IF TK +A++L + L A
Sbjct: 294 PDDQHQTVNTVKQVVYRVHSLNKVEVLARILQSKGRG-RAVIFCRTKRTAARLGEDL-AA 351
Query: 387 R-----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVE 441
R +LHGD+ Q RE L FR+GK LVAT+VAARG+D++DV ++ + P D +
Sbjct: 352 RGFAVGSLHGDLGQGAREQALRAFRNGKVDVLVATDVAARGIDVDDVTHVVNYQCPEDEK 411
Query: 442 AYIHRSGRTGRAGNTGVAVMLYD----PRKSSVSK 472
YIHR GRTGRAGN+G AV D PR S +SK
Sbjct: 412 IYIHRIGRTGRAGNSGTAVTFVDWDDTPRWSLISK 446
>gi|379710610|ref|YP_005265815.1| ATP-dependent RNA helicase [Nocardia cyriacigeorgica GUH-2]
gi|374848109|emb|CCF65181.1| ATP-dependent RNA helicase [Nocardia cyriacigeorgica GUH-2]
Length = 591
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 161/397 (40%), Positives = 228/397 (57%), Gaps = 29/397 (7%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES PIQA T +L G+D+VG A+TG GKT AF +PIL L PT G+A
Sbjct: 38 GYESPSPIQAATIPPLLAGADVVGLAQTGTGKTAAFAIPILMGLE--PT--------GKA 87
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV E F Y + GL +YGG Y Q L++G VV+GTPG
Sbjct: 88 PRALVLAPTRELAIQVAEAFGRYATHIPGLHVLPIYGGQSYGVQLSGLRRGAHVVVGTPG 147
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+E+G +DLS L++ VLDEADEML+MGF EDVE IL A+K Q LFSAT+P+
Sbjct: 148 RVIDHLEKGTLDLSQLQYLVLDEADEMLKMGFQEDVERILADTP-ADK-QVALFSATMPA 205
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ IS ++L +++ K +TN+ + S + + I+ S
Sbjct: 206 AIRKISKQYLHD---PVEITVKAKTSTNTNITQRWVQVSHQRKLDALTRILEVESFEA-M 261
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK++ +LA+ L A A++GDI Q+QRE T+ ++G LVAT+VAARG
Sbjct: 262 IIFVRTKQATEELAEKLRARGFSAAAINGDIAQAQRERTIGQLKAGTLDILVATDVAARG 321
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKF 481
LD++ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + K IER +
Sbjct: 322 LDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGEALLFVAPRERHLLKAIERATRHPL 381
Query: 482 EHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSA 518
+ P D+ A+ +++ D++ SA
Sbjct: 382 TEMQLPSVDDV-------NAQRVSKFGDAITENLNSA 411
>gi|407686365|ref|YP_006801538.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Balearic
Sea AD45']
gi|407289745|gb|AFT94057.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Balearic
Sea AD45']
Length = 596
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 168/434 (38%), Positives = 245/434 (56%), Gaps = 34/434 (7%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
P+ + L+ G E PIQA + ++L+G DL+G+A+TG GKT AF LP+L ++ P +
Sbjct: 17 PILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANID--PEQ- 73
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKG 237
R P +LVL PTRELA QV E F VY + + +YGG Y Q +LK+G
Sbjct: 74 -------RKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQLKRG 126
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
+ VV+GTPGRI DHI+R +DLS LKF VLDEADEMLRMGF++DVELIL + QT
Sbjct: 127 VQVVVGTPGRIIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPEER--QT 184
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P +K I+ ++LK D K + + K+ ++ +R + + + + I+
Sbjct: 185 ALFSATMPGPIKKITQRYLK-DPKHVKIAS--KVSTASTIRQRYCQIAPHHKLEALTRIM 241
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPGARA-----LHGDIQQSQREVTLAGFRSGKFMT 412
G IIF TK + +LAD L AR L+GDI Q+ RE T+ + GK
Sbjct: 242 EVEVFDG-MIIFVRTKTATVELADKL-SARGYDVEPLNGDIPQAARERTVEKLKQGKIDI 299
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVS 471
LVAT+V ARGLD+ V +I + P D E+Y+HR GRTGRAG G A++ R K +
Sbjct: 300 LVATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLLF 359
Query: 472 KIERESGVKFEHISAPQPADIAKAAGVEAAETITQVS-----DSVIPAFKSAAEELLNNS 526
IE+ + E + P ++I + +++ + + +S++P E++
Sbjct: 360 SIEKTTKQPIEAMPIPSISEINETRLSRFKQSVAEATQDDSIESLMPIV-----EMIKEE 414
Query: 527 GLSAAELLAKALAK 540
++ E+L AL K
Sbjct: 415 NEASPEVLMAALLK 428
>gi|213965889|ref|ZP_03394080.1| dead/deah box helicase [Corynebacterium amycolatum SK46]
gi|213951467|gb|EEB62858.1| dead/deah box helicase [Corynebacterium amycolatum SK46]
Length = 454
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 148/364 (40%), Positives = 215/364 (59%), Gaps = 14/364 (3%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES+ P V ++ + + L +GI F IQ +T + LDG+D++G+ARTG GKTL F
Sbjct: 3 ESQSPTFVE-LGVAAEICDALADEGITRTFAIQELTLPLALDGTDIIGQARTGMGKTLGF 61
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223
+P+++ + + + + G RA ++++PTREL QV ED + L C +YG
Sbjct: 62 GVPLIDRVFDD-ARIPEPDGTARA---IIIVPTRELCVQVGEDLARAAHSTNLRVCTIYG 117
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283
G PY Q +L +G+D+++GTPGR+ D +R N++LS +K VLDEADEML +GF+ D+E
Sbjct: 118 GRPYEEQIEQLDRGVDIIVGTPGRLIDLYQRNNLELSGVKILVLDEADEMLDLGFLPDIE 177
Query: 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343
IL V D QT+LFSAT+P + ++ F+ G E+ + IV
Sbjct: 178 KILAAVPDER--QTMLFSATMPGPILTLARTFMNRPVHIRAESGEEEATVHETTKQIVFQ 235
Query: 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGDIQQSQR 398
+ VI I++ + GRTIIF TK A+ +A+ L G R A+HGD+ Q R
Sbjct: 236 SHQMDKVSVIARILQA-NGRGRTIIFARTKRGAASVAEQL-GERGFLVTAVHGDMGQPAR 293
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E +L FR+G LVAT+VAARG+DI+DV +I + P D Y+HR GRTGRAG++GV
Sbjct: 294 ERSLTAFRNGDVDVLVATDVAARGIDIDDVTHVINHQVPDDEMTYVHRIGRTGRAGHSGV 353
Query: 459 AVML 462
AV L
Sbjct: 354 AVTL 357
>gi|405982153|ref|ZP_11040477.1| hypothetical protein HMPREF9240_01483 [Actinomyces neuii BVS029A5]
gi|404390944|gb|EJZ86010.1| hypothetical protein HMPREF9240_01483 [Actinomyces neuii BVS029A5]
Length = 515
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 150/375 (40%), Positives = 215/375 (57%), Gaps = 13/375 (3%)
Query: 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLP 166
H + F +S + + L +GI FPIQA+T + L G+D++G+A+TG GKTL F +P
Sbjct: 34 HKKTFADFGVSASICQALAEEGITHPFPIQALTLPVALKGNDIIGQAKTGTGKTLGFGIP 93
Query: 167 ILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226
LE + +K P L++LPTRELAKQV D V + +YGG
Sbjct: 94 ALEQIVGPQEDGYEKLLNAGCPQALIILPTRELAKQVARDLKVAAKNRSVRITQIYGGVA 153
Query: 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286
+ Q L+KG D+V+GTPGR+ D ++ G + LS +K VLDEADEML +GF+ DVE +L
Sbjct: 154 FEPQLKALEKGTDLVVGTPGRLIDLLKHGKLKLSGVKVVVLDEADEMLDLGFLPDVETLL 213
Query: 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN-VRHIVLPCS 345
+ T+LFSAT+P V ++ +++ S I A+ N V+ +V C
Sbjct: 214 SRTPAGR--HTMLFSATMPGEVIALARRYM-SHPTHIRAQDPADQNATVNSVKQVVYRCH 270
Query: 346 SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVT 401
+ + +V+ I++ G +IIFT TK +A++LAD L A ALHGD+ Q RE
Sbjct: 271 AMNKLEVVSRILQAKGR-GLSIIFTRTKRTAARLADDLSDRGFAAAALHGDLGQGAREQA 329
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
+ FR GK LVAT+VAARG+D++DV +I + P D + Y+HR GRTGRAG +G A+
Sbjct: 330 MRAFRKGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYLHRIGRTGRAGASGTAIT 389
Query: 462 LYD----PRKSSVSK 472
D PR +SK
Sbjct: 390 FVDWDDVPRWKLISK 404
>gi|317507153|ref|ZP_07964911.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
gi|316254555|gb|EFV13867.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
Length = 530
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 155/379 (40%), Positives = 212/379 (55%), Gaps = 26/379 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E ++ G E+ PIQA T +LDG D+VG A TG GKT AF LP+L ++ K
Sbjct: 22 EAVREVGYETPSPIQAQTIPALLDGRDVVGLAATGTGKTAAFALPVL-------SRIDPK 74
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC-CLYGGAPYHAQEFKLKKGIDV 240
R P LVL PTRELA QV E F Y + S C+YGG Y Q L +G V
Sbjct: 75 L---RRPQALVLAPTRELALQVSEAFSRYASKMPQVSVVCIYGGGAYPVQLQALGRGAQV 131
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGR+ DH+ERG + L L+F VLDEADEML+MGF EDVE +LG A + Q LF
Sbjct: 132 VVGTPGRVVDHLERGTLKLGELRFLVLDEADEMLKMGFQEDVERVLGAA--AEEKQVALF 189
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC- 359
SAT+P ++ IS +L + +++ S N+ + + ++ I+
Sbjct: 190 SATMPGAIRKISKTYLHN---PVEVTVKAATTTSENIEQRYTLVAHHRKLDLLTRILEVE 246
Query: 360 -YSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+S+ I+F TK++ +LA+ L AR L+GDI Q+ RE T++ R GK LV
Sbjct: 247 PFSA---MIVFVRTKQATEELAERLRARGFAARPLNGDIPQAARERTVSALREGKIDILV 303
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKI 473
AT+VAARGLD+ + + + P D E+Y+HR GRTGRAG TGV+ + PR +S + I
Sbjct: 304 ATDVAARGLDVERITHVFNYDAPHDTESYVHRIGRTGRAGRTGVSYLFVTPRERSMIGAI 363
Query: 474 ERESGVKFEHISAPQPADI 492
ER + P AD+
Sbjct: 364 ERATRQPLAETPFPTVADV 382
>gi|163839675|ref|YP_001624080.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
gi|162953151|gb|ABY22666.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
Length = 652
Score = 259 bits (661), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 161/391 (41%), Positives = 220/391 (56%), Gaps = 24/391 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
LK G E PIQA T ++L+G D+VG A+TG GKT AF LP L + N P A+K T
Sbjct: 59 LKDVGYEKPSPIQAATIPVLLEGRDVVGLAQTGTGKTAAFALPALSRMANLP--ATKDT- 115
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
+LVL PTRELA QV E F Y + + +YGG+ Y Q L++G VV+
Sbjct: 116 -----QILVLAPTRELALQVAEAFSSYAAHMDNFSVLPVYGGSAYGPQLAGLRRGAQVVV 170
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+ +G++DLS+L++ VLDEADEMLRMGF +DVE IL E Q LFSA
Sbjct: 171 GTPGRVIDHLSKGSLDLSNLQYLVLDEADEMLRMGFADDVEQIL--AETPEDKQVALFSA 228
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSSSARSQVIPDIIRCY 360
T+P ++ I+ K+L + + + K K +T N R L + + I+
Sbjct: 229 TMPGQIRRIAKKYLNNPAEI-----SVKAKTTTGENTRQRYLQVMGPHKLDAMTRILEVE 283
Query: 361 SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
G I F TK + +LAD L A A++GDI Q QRE T+ RSG LVAT
Sbjct: 284 DYDG-VIAFVRTKMATEELADKLKSRGYRAAAINGDIPQQQRERTVEALRSGSIDVLVAT 342
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIER 475
+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG +G A++ PR K + IE+
Sbjct: 343 DVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRAIEK 402
Query: 476 ESGVKFEHISAPQPADIAKAAGVEAAETITQ 506
+ E + P I + A+ IT+
Sbjct: 403 ATRQPVEQMHLPSADTINNLRLSKFADQITE 433
>gi|319787505|ref|YP_004146980.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1]
gi|317466017|gb|ADV27749.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis
11-1]
Length = 616
Score = 259 bits (661), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 162/416 (38%), Positives = 225/416 (54%), Gaps = 37/416 (8%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
PL L + G E+ PIQA T +L G D++G A+TG GKT AF LPIL L K
Sbjct: 22 PLLAALTAVGYETPSPIQAATIPALLSGRDVLGTAQTGTGKTAAFALPILSHLD---LKL 78
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKG 237
++ P LVL PTRELA QV E F Y + G +YGG Y Q L++G
Sbjct: 79 AR-------PQALVLAPTRELAIQVAEAFQRYAVQMPGFQVLPIYGGQGYGPQLHALRRG 131
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
+ VV+GTPGR+ DH+ERG +DLS L+ VLDEADEMLRMGF++DVE +L KV D +V
Sbjct: 132 VHVVVGTPGRVIDHLERGTLDLSGLRNLVLDEADEMLRMGFIDDVEAVLKKVPDERQVA- 190
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P ++ I+ +L ++ +++ K S N+R S + + I+
Sbjct: 191 -LFSATMPPPIRRIAQTYL---REPVEVTIASKTTTSANIRQRYWFVSGMHKLDALTRIL 246
Query: 358 RCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTL 413
I+F TK + +LA+ L A A++GD+QQ QRE T+ + G+ L
Sbjct: 247 EAEPFDA-MIVFARTKAATEELANKLQARGVAAAAINGDMQQQQRERTIQQLKDGRLDVL 305
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSK 472
VAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR K +
Sbjct: 306 VATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVTPREKGMLRA 365
Query: 473 IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGL 528
IER + E + P T+ V+D + F E L GL
Sbjct: 366 IERATRQPIEEMRLP---------------TVQAVNDRRVARFFERIEGTLEAGGL 406
>gi|383810152|ref|ZP_09965659.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Rothia aeria F0474]
gi|383447091|gb|EID50081.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Rothia aeria F0474]
Length = 536
Score = 259 bits (661), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 142/349 (40%), Positives = 204/349 (58%), Gaps = 7/349 (2%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+ + L + GI + FPIQ M + L G D++ +A+TG GKTL F LP ++S+T +
Sbjct: 22 ISDALAAVGITTPFPIQTMALPVALAGHDIIAQAKTGTGKTLGFGLPTIQSVTGRDDEGW 81
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
+ AP L+L+PTRELA QV ED + LYGG PY Q LKKG++
Sbjct: 82 DDLEFPGAPQALILVPTRELAIQVGEDLAIASKLRNARVATLYGGVPYEPQVKLLKKGLE 141
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+GTPGR+ D +G ++L +K VLDEADEML +GF+ VE IL + + Q++L
Sbjct: 142 VVVGTPGRLIDLYNQGALNLKQVKIVVLDEADEMLDLGFLPSVEKILSYL--PAQRQSML 199
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSAT+P V ++ +++ + ++ K ++R +V + +++ I+R
Sbjct: 200 FSATMPGPVISMARRYMNKPMRMSAADPEDQAKTKASIRQVVYRVHHMDKDEMLGRILRA 259
Query: 360 YSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
GRT+IFT+TK A+++AD L A LHGD+ Q RE L FR+GK LVA
Sbjct: 260 QGR-GRTVIFTKTKRDAARVADELIARGFAAAPLHGDLNQGAREQALRAFRNGKVDILVA 318
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
T+VAARG+D+ DV +I P D + Y+HR+GRTGRAGN G AV D
Sbjct: 319 TDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGNEGTAVTFVD 367
>gi|145295298|ref|YP_001138119.1| hypothetical protein cgR_1238 [Corynebacterium glutamicum R]
gi|417970048|ref|ZP_12610983.1| hypothetical protein CgS9114_03408 [Corynebacterium glutamicum
S9114]
gi|140845218|dbj|BAF54217.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344045730|gb|EGV41400.1| hypothetical protein CgS9114_03408 [Corynebacterium glutamicum
S9114]
Length = 729
Score = 259 bits (661), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 164/459 (35%), Positives = 249/459 (54%), Gaps = 26/459 (5%)
Query: 100 QERGESEHPNAVSRFR-ISVPLR--EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTG 156
Q ES A S F + +P R + ++ G E+ PIQA T ++++G D+VG A+TG
Sbjct: 90 QPSNESSSTEAKSGFDALGLPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTG 149
Query: 157 QGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG- 215
GKT AF LPIL S+ R+P LVL PTRELA QV + F + VG
Sbjct: 150 TGKTAAFALPIL----------SRIDKSVRSPQALVLAPTRELALQVADSFQSFADHVGG 199
Query: 216 LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275
L +YGG Y Q L++G +V+GTPGRI DH+E+G++D+S L+F VLDEADEML
Sbjct: 200 LNVLPIYGGQAYGIQLSGLRRGAHIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLN 259
Query: 276 MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335
MGF EDVE IL D +V LFSAT+P+ ++ +S ++L + ++ + + +T
Sbjct: 260 MGFQEDVERILEDTPDEKQVA--LFSATMPNGIRRLSKQYLNN---PAEITVKSETRTNT 314
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHG 391
N+ L + + + I+ I+F TK ++A+ L A A++G
Sbjct: 315 NITQRFLNVAHRNKMDALTRILEVTEFEA-MIMFVRTKHETEEVAEKLRARGFSAAAING 373
Query: 392 DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451
DI Q+QRE T+ + G+ LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTG
Sbjct: 374 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTG 433
Query: 452 RAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQ-VSD 509
RAG TG A++ PR + + IER + + P + V+ A++IT+ + D
Sbjct: 434 RAGRTGEAILFVTPRERRMLRSIERATNAPLHEMELPTVDQVNDFRKVKFADSITKSLED 493
Query: 510 SVIPAFKSAAEELLNNSGLSAAELLAKALAKAVVSAFLF 548
+ F++ +E + + ++ A +A FL
Sbjct: 494 KQMDLFRTLVKEYSQANDVPLEDIAAALATQAQSGDFLL 532
>gi|410860280|ref|YP_006975514.1| ATP-dependent RNA helicase [Alteromonas macleodii AltDE1]
gi|410817542|gb|AFV84159.1| ATP-dependent RNA helicase [Alteromonas macleodii AltDE1]
Length = 586
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 167/434 (38%), Positives = 246/434 (56%), Gaps = 34/434 (7%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
P+ + L+ G E PIQA + ++L+G DL+G+A+TG GKT AF LP+L ++ P +
Sbjct: 17 PILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANID--PEQ- 73
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKG 237
R P +LVL PTRELA QV E F VY + + +YGG Y Q +LK+G
Sbjct: 74 -------RKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQLKRG 126
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
+ VV+GTPGRI DHI+R +DLS LK+ VLDEADEMLRMGF++DVELIL + QT
Sbjct: 127 VQVVVGTPGRIIDHIKRKTLDLSELKYLVLDEADEMLRMGFIDDVELILSHAPEER--QT 184
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P +K I+ ++LK D K + + K+ ++ +R + + + + I+
Sbjct: 185 ALFSATMPGPIKKITQRYLK-DPKHVKIAS--KVSTASTIRQRYCQIAPHHKLEALTRIM 241
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPGARA-----LHGDIQQSQREVTLAGFRSGKFMT 412
+ G IIF TK + +LAD L AR L+GDI QS RE T+ + G+
Sbjct: 242 EVEAFDG-MIIFVRTKTATVELADKL-SARGYDVEPLNGDIPQSARERTVEKLKQGQIDI 299
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVS 471
LVAT+V ARGLD+ V +I + P D E+Y+HR GRTGRAG G A++ R K +
Sbjct: 300 LVATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLLF 359
Query: 472 KIERESGVKFEHISAPQPADIAKAAGVEAAETITQVS-----DSVIPAFKSAAEELLNNS 526
IE+ + E + P ++I + +++ + + +S++P E++
Sbjct: 360 SIEKTTKQPIEAMPIPSISEINETRLSRFKQSVAEATQHDSIESLMPIV-----EMIKEE 414
Query: 527 GLSAAELLAKALAK 540
++ E+L AL K
Sbjct: 415 NEASPEVLMAALLK 428
>gi|114775697|ref|ZP_01451265.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
PV-1]
gi|114553808|gb|EAU56189.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
PV-1]
Length = 628
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 163/434 (37%), Positives = 241/434 (55%), Gaps = 30/434 (6%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ + +K +G E+ PIQA T ++L+G D++G+A+TG GKT AF LP+L +
Sbjct: 12 LSEPVLKSIKDQGYENATPIQAATIPLLLEGRDVLGQAQTGTGKTAAFALPLLSMIDIDQ 71
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
R P VLVL PTRELA QV E F Y + G +YGG Y Q +L
Sbjct: 72 ----------RDPQVLVLAPTRELAIQVAEAFQQYAHHIKGFHVLPIYGGQSYDIQLRQL 121
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
K+G VV+GTPGR+ DHI R ++LS LK VLDEADEMLRMGF++DV+ +L ++ +
Sbjct: 122 KRGAHVVVGTPGRVMDHIRRKTLNLSGLKTLVLDEADEMLRMGFIDDVKWVLEQLPEQR- 180
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
Q LFSAT+P+ ++ I+ LK+ + + +K + +R S + +
Sbjct: 181 -QIALFSATMPAVIRKIAQSHLKNPQH---VTIKDKTTTAPTIRQRFWMVSGRNKIDALT 236
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKF 410
I+ G IIF TK + ++A+ L A AL+GD++QSQRE + +SGK
Sbjct: 237 RILEFEPFDG-MIIFVRTKTATDEVAERLEARGYAASALNGDVKQSQREQIVNRLKSGKI 295
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSS 469
+VAT+VAARGLD+ + +I + P D E+Y+HR GRTGRAG G A++ PR K
Sbjct: 296 DIVVATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRKGDAILFVAPREKRM 355
Query: 470 VSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSV----IPAFKSAAEELLNN 525
+ IE+ + + E + P DI + A+ ++SD++ + F E+
Sbjct: 356 LYSIEKATNQRVEQLEMPTTEDINN---LRIADFKQRISDTLAADGLELFAGIVEQYEQE 412
Query: 526 SGLSAAELLAKALA 539
+ A E +A ALA
Sbjct: 413 HNVPAQE-IAAALA 425
>gi|311111789|ref|YP_003983011.1| DEAD-box RNA helicase [Rothia dentocariosa ATCC 17931]
gi|310943283|gb|ADP39577.1| DEAD-box RNA helicase [Rothia dentocariosa ATCC 17931]
Length = 580
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 145/361 (40%), Positives = 205/361 (56%), Gaps = 7/361 (1%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P + + F + + + L + GI S FPIQ MT + L G D++G+A+TG GKTL F LP
Sbjct: 22 PKSFADFGVRQDISDALAAVGIVSPFPIQEMTLPVALAGHDIIGQAKTGTGKTLGFGLPT 81
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
++ + AP L+L+PTRELA QV D V LYGG PY
Sbjct: 82 IQRVVGRDDDQWGSLQKPGAPQALILVPTRELAIQVGNDLAVASKLRNARVATLYGGVPY 141
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q +L KG++VV+GTPGR+ D + G + L+ +K VLDEADEML +GF+ VE I+G
Sbjct: 142 EPQVEQLTKGLEVVVGTPGRLIDLYQHGALTLTQVKTVVLDEADEMLDLGFLPSVEKIMG 201
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
+ QT+LFSAT+P V ++ K++ + K ++R +V
Sbjct: 202 YL--PTDRQTMLFSATMPGPVITMARKYMTKPMHISAADPEDHAKTKASIRQVVYRVHHM 259
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLA 403
+ +++ I+R + GRT+IFT+TK A+++AD L A LHGD+ Q RE L
Sbjct: 260 DKDEMLGRILRAHGR-GRTVIFTKTKRDAARVADELIARGFAAAPLHGDLNQGAREQALR 318
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
FR+GK LVAT+VAARG+D+ DV +I P D + Y+HR+GRTGRAG+ G AV
Sbjct: 319 AFRNGKVDILVATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGHEGTAVTFV 378
Query: 464 D 464
D
Sbjct: 379 D 379
>gi|300781459|ref|ZP_07091313.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
33030]
gi|300533166|gb|EFK54227.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
33030]
Length = 675
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 155/421 (36%), Positives = 235/421 (55%), Gaps = 23/421 (5%)
Query: 92 EPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVG 151
EP E E E++ P + + P+ + +K G ES IQA T ++++G D+VG
Sbjct: 54 EPNQDGENAETSETK-PEGFNGLGLPAPVLDAIKRVGFESPSQIQAETIPLLMEGRDVVG 112
Query: 152 RARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211
A+TG GKT AF LPIL + R P L+L PTRELA QV + F +
Sbjct: 113 LAQTGTGKTAAFALPILARIDTS----------ARYPQALILAPTRELALQVSDSFQSFA 162
Query: 212 GAVGLTSCC-LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270
+G S +YGG Y Q L++G +++GTPGR+ DH+E+G++D+S+L+F VLDEA
Sbjct: 163 DHLGGISVLPIYGGQAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEA 222
Query: 271 DEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK 330
DEML MGF EDVE IL + +V LFSAT+P+ ++ IS +L ++ + K
Sbjct: 223 DEMLNMGFQEDVERILEDTPEDKQVA--LFSATMPNAIRRISHDYLNDPEE---VTVKAK 277
Query: 331 MKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----A 386
+ +TN+ L + + I ++ I+F TK+ ++A+ L A
Sbjct: 278 TRTNTNITQRYLFTAHRNKLDAITRVLEVTEFDA-MIVFVRTKQETEEIAEKLRARGFSA 336
Query: 387 RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHR 446
A++GDI Q QRE T+ R G+ LVAT+VAARGLD+ + ++ + P D E+Y+HR
Sbjct: 337 AAINGDIAQQQRERTVDMLRDGRLDILVATDVAARGLDVERISHVLNYDIPNDTESYVHR 396
Query: 447 SGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETIT 505
GRTGRAG TG A++ PR + + IE+ +G K E + P ++ + + A++IT
Sbjct: 397 IGRTGRAGRTGEALLFVTPRERRMLRSIEKVTGAKIEEMDLPTVDEVNVSRMNKFADSIT 456
Query: 506 Q 506
+
Sbjct: 457 E 457
>gi|418245162|ref|ZP_12871569.1| putative helicase [Corynebacterium glutamicum ATCC 14067]
gi|354510570|gb|EHE83492.1| putative helicase [Corynebacterium glutamicum ATCC 14067]
Length = 732
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 164/459 (35%), Positives = 249/459 (54%), Gaps = 26/459 (5%)
Query: 100 QERGESEHPNAVSRFR-ISVPLR--EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTG 156
Q ES A S F + +P R + ++ G E+ PIQA T ++++G D+VG A+TG
Sbjct: 90 QPSNESSSTEAKSGFDALGLPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTG 149
Query: 157 QGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG- 215
GKT AF LPIL S+ R+P LVL PTRELA QV + F + VG
Sbjct: 150 TGKTAAFALPIL----------SRIDKSVRSPQALVLAPTRELALQVADSFQSFADHVGG 199
Query: 216 LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275
L +YGG Y Q L++G +V+GTPGRI DH+E+G++D+S L+F VLDEADEML
Sbjct: 200 LNVLPIYGGQAYGIQLSGLRRGAHIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLN 259
Query: 276 MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335
MGF EDVE IL D +V LFSAT+P+ ++ +S ++L + ++ + + +T
Sbjct: 260 MGFQEDVERILEDTPDEKQVA--LFSATMPNGIRRLSKQYLNN---PAEITVKSETRTNT 314
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHG 391
N+ L + + + I+ I+F TK ++A+ L A A++G
Sbjct: 315 NITQRFLNVAHRNKMDALTRILEVTEFEA-MIMFVRTKHETEEVAEKLRARGFSAAAING 373
Query: 392 DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451
DI Q+QRE T+ + G+ LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTG
Sbjct: 374 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTG 433
Query: 452 RAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQ-VSD 509
RAG TG A++ PR + + IER + + P + V+ A++IT+ + D
Sbjct: 434 RAGRTGEAILFVTPRERRMLRSIERATNAPLHEMELPTVDQVNDFRKVKFADSITKSLED 493
Query: 510 SVIPAFKSAAEELLNNSGLSAAELLAKALAKAVVSAFLF 548
+ F++ +E + + ++ A +A FL
Sbjct: 494 KQMDLFRTLVKEYSQANDVPLEDIAAALATQAQSGDFLL 532
>gi|406595506|ref|YP_006746636.1| ATP-dependent RNA helicase [Alteromonas macleodii ATCC 27126]
gi|407682465|ref|YP_006797639.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'English
Channel 673']
gi|406372827|gb|AFS36082.1| ATP-dependent RNA helicase [Alteromonas macleodii ATCC 27126]
gi|407244076|gb|AFT73262.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'English
Channel 673']
Length = 596
Score = 258 bits (660), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 168/434 (38%), Positives = 245/434 (56%), Gaps = 34/434 (7%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
P+ + L+ G E PIQA + ++L+G DL+G+A+TG GKT AF LP+L ++ P +
Sbjct: 17 PILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANID--PEE- 73
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKG 237
R P +LVL PTRELA QV E F VY + + +YGG Y Q +LK+G
Sbjct: 74 -------RKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQLKRG 126
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
+ VV+GTPGRI DHI+R +DLS LKF VLDEADEMLRMGF++DVELIL + QT
Sbjct: 127 VQVVVGTPGRIIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPEER--QT 184
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P +K I+ ++LK D K + + K+ ++ +R + + + + I+
Sbjct: 185 ALFSATMPGPIKKITQRYLK-DPKHVKIAS--KVSTASTIRQRYCQIAPHHKLEALTRIM 241
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPGARA-----LHGDIQQSQREVTLAGFRSGKFMT 412
G IIF TK + +LAD L AR L+GDI Q+ RE T+ + GK
Sbjct: 242 EVEVFDG-MIIFVRTKTATVELADKL-SARGYDVEPLNGDIPQAARERTVEKLKQGKIDI 299
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVS 471
LVAT+V ARGLD+ V +I + P D E+Y+HR GRTGRAG G A++ R K +
Sbjct: 300 LVATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLLF 359
Query: 472 KIERESGVKFEHISAPQPADIAKAAGVEAAETITQVS-----DSVIPAFKSAAEELLNNS 526
IE+ + E + P ++I + +++ + + +S++P E++
Sbjct: 360 SIEKTTKQPIEAMPIPSISEINETRLSRFKQSVAEATQDDSIESLMPIV-----EMIKEE 414
Query: 527 GLSAAELLAKALAK 540
++ E+L AL K
Sbjct: 415 NEASPEVLMAALLK 428
>gi|333989860|ref|YP_004522474.1| cold-shock DEAD-box protein DeaD [Mycobacterium sp. JDM601]
gi|333485828|gb|AEF35220.1| cold-shock DEAD-box protein DeaD [Mycobacterium sp. JDM601]
Length = 547
Score = 258 bits (660), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 166/430 (38%), Positives = 238/430 (55%), Gaps = 24/430 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ IQA T +L GSD+VG A+TG GKT AF +PIL + ASK T
Sbjct: 9 GYETPSAIQAATIPALLAGSDVVGLAQTGTGKTAAFAIPILSRIDT----ASKAT----- 59
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC-LYGGAPYHAQEFKLKKGIDVVIGTPG 246
LVL PTRELA QV E F YG + + +YGGA Y Q LK+G VV+GTPG
Sbjct: 60 -QALVLAPTRELALQVAEAFGRYGSHLPRVNVLPIYGGASYTVQLSGLKRGAQVVVGTPG 118
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+ERG++DLS L + VLDEADEML+MGF EDVE IL + +V LFSAT+P
Sbjct: 119 RVIDHLERGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYKQVA--LFSATMPP 176
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ I+T++L +++ K + N+ + + + + ++ +
Sbjct: 177 AIRRITTRYLHD---PVEVTVEAKTTTAENISQRYIEVAGPRKMDALTRVLEVETFEA-M 232
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK++ ++A+ L A A++GDI Q+QRE T+A +SG LVAT+VAARG
Sbjct: 233 IVFVRTKQATEEVAEKLRARGFAAAAINGDIAQAQRERTIASLKSGNIDILVATDVAARG 292
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKF 481
LD+ + ++ + P D EAY+HR GRTGRAG +G A++ PR+ + K IER + K
Sbjct: 293 LDVERISHVVNYDIPHDTEAYVHRIGRTGRAGRSGTALLFVSPRERHLLKAIERATRQKL 352
Query: 482 EHISAPQPADIAKAAGVEAAETI-TQVSDSVIPAFKSAAEELLNNSGLSAAELLAK-ALA 539
+ P D+ + A++I T + F+S EE + A++ A AL
Sbjct: 353 TESTLPTVEDVNAQRVAKFADSITTTLGADGTDLFRSLVEEYSREHNVPMADIAAALALQ 412
Query: 540 KAVVSAFLFS 549
AFL +
Sbjct: 413 SRDGEAFLMA 422
>gi|307611190|emb|CBX00835.1| hypothetical protein LPW_25391 [Legionella pneumophila 130b]
Length = 589
Score = 258 bits (659), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 165/433 (38%), Positives = 244/433 (56%), Gaps = 31/433 (7%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F S L + L+ + PIQA T ++L G D + A+TG GKT AF LPIL++L
Sbjct: 9 STFNFSSALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQNL 68
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV---YGGAVGLTSCCLYGGAPYH 228
+ P ++ + L+L PTRELA QV E F++ Y V + C GG Y
Sbjct: 69 S--PEISTTQA--------LILAPTRELAIQVAEQFELLSKYQRNVTIAVLC--GGQEYG 116
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q +L+ G VV+GTPGRI DHI++G + L++LK +LDEADEMLRMGF+EDVE IL K
Sbjct: 117 RQLKQLRSGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEK 176
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSS 346
+ + K Q LFSAT+P ++ I+ +L +D +I++ +M+ +T ++ L S
Sbjct: 177 LPE--KKQMALFSATMPYRIRQIANTYL-NDPASIEI----RMETATVKSIEQRFLFASV 229
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTL 402
+ + ++ G I+F TK S ++A+LL A A+HGDI QS RE +
Sbjct: 230 HQKPDALIRVLEVEDYQG-VIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERII 288
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
A F+ G LVAT+VAARGLD+ V +I + P D E Y+HR GRTGRAG +GV ++
Sbjct: 289 AQFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILF 348
Query: 463 YDPRKSS-VSKIERESGVKFEHISAPQPADIAKAAGVEAAETI-TQVSDSVIPAFKSAAE 520
P++S +S IER + + E + P I A I T+++ + ++K E
Sbjct: 349 VTPKESRLISSIERHTRQRIEKVQVPNDHMIQMARQQRFMSNITTRLNHEHVYSYKRIVE 408
Query: 521 ELLNNSGLSAAEL 533
E + + +SA ++
Sbjct: 409 EYIKDHDVSAVDV 421
>gi|388455441|ref|ZP_10137736.1| ATP-dependent RNA helicase [Fluoribacter dumoffii Tex-KL]
Length = 565
Score = 258 bits (659), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 163/438 (37%), Positives = 240/438 (54%), Gaps = 24/438 (5%)
Query: 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
S+ + + F S L + L+ + PIQA T ++L+G D + A+TG GKT AF
Sbjct: 2 SQEITSFASFNFSDALNQALEDMKFTTPSPIQAQTIPLLLEGRDAIALAQTGTGKTAAFA 61
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY-GGAVGLTSCCLYG 223
LPIL++L+N + L+L PTRELA QV E F + G T L G
Sbjct: 62 LPILQNLSNV-----------QGTQALILAPTRELAIQVAEQFQLLSANQRGTTVAVLCG 110
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283
G Y Q +LK G VV+GTPGRI DHIER ++L +L+ +LDEADEMLRMGF+ED+E
Sbjct: 111 GQDYGRQLKQLKGGAQVVVGTPGRILDHIERRTLNLDNLRTFILDEADEMLRMGFIEDIE 170
Query: 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343
I+ K+ + ++ LFSAT+P ++ I+ +L + +I++ S R L
Sbjct: 171 TIMAKLPEEKQIG--LFSATMPYRIRQIANTYLH-NPVSIEIRAETATVKSIEQR--FLF 225
Query: 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQRE 399
S + + ++ G I+F TK S ++A++L A A+HGDI Q+ RE
Sbjct: 226 ASGHQKPDALLRVLAVEEYQG-VIVFVRTKSSTEEVAEVLQQQGMRAMAIHGDITQALRE 284
Query: 400 VTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 459
+A FR G LVAT+VAARGLD++ V +I + P D E Y+HR GRTGRAG +GVA
Sbjct: 285 RIIAQFRQGAIDILVATDVAARGLDVDRVTHVINYDLPHDNETYVHRIGRTGRAGRSGVA 344
Query: 460 VMLYDPRKSS-VSKIERESGVKFEHISAPQPADIAKAAGVEAAETIT-QVSDSVIPAFKS 517
V+ P++S +S IER + + ++ P I A IT ++ +P++K
Sbjct: 345 VLFVTPKESRLISSIERHTRQRIAKVTVPNDHMIQVARQQRFMANITARLEHEHLPSYKR 404
Query: 518 AAEELLNNSGLSAAELLA 535
EE + + +SA ++ A
Sbjct: 405 IIEEYIKENDVSAVDVAA 422
>gi|452952010|gb|EME57445.1| ATP-dependent RNA helicase [Amycolatopsis decaplanina DSM 44594]
Length = 530
Score = 258 bits (659), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 158/367 (43%), Positives = 212/367 (57%), Gaps = 22/367 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
E E P S F + + + L GIE F IQA+T + + G DL+G+ARTG GKTL F
Sbjct: 2 EPESPTFAS-FGVKPEIVKALGEAGIERTFAIQALTLPLAMAGDDLIGQARTGMGKTLGF 60
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223
+P+L + + G G P VLV++PTREL QV D G +G+ + +YG
Sbjct: 61 GVPLLHRV--------EVPGDG-TPQVLVVVPTRELCVQVANDLKGAGKHLGIRTLAIYG 111
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283
G PY Q L+KG+DVVIGTPGR+ D E+ ++ L ++ VLDEADEML +GF+ D+E
Sbjct: 112 GRPYEPQIEALRKGVDVVIGTPGRLLDLAEQKHLVLGKVRGLVLDEADEMLDLGFLPDIE 171
Query: 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343
IL V D K QT+LFSAT+P + ++ FL + I N+ V
Sbjct: 172 RILRMVPD--KRQTMLFSATMPGPIITLARTFL-TQPTHIRAEENDAGAIHERTTQFVYR 228
Query: 344 CSSSARSQVIPDIIRCYSSGGR--TIIFTETKESASQLADLLP----GARALHGDIQQSQ 397
S + ++ I R + GR T+IFT TK +A ++AD L A A+HGD+ Q
Sbjct: 229 AHSMDKPEL---IARALQAEGRGLTMIFTRTKRTAQKVADELVERGFAAAAVHGDLGQGA 285
Query: 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG 457
RE L FRSGK LVAT+VAARG+DI+DV +I + P D + Y+HR GRTGRAG TG
Sbjct: 286 REQALRAFRSGKVDVLVATDVAARGIDIDDVTHVINYQTPEDEKTYVHRIGRTGRAGRTG 345
Query: 458 VAVMLYD 464
VA+ L D
Sbjct: 346 VAITLVD 352
>gi|54298236|ref|YP_124605.1| hypothetical protein lpp2294 [Legionella pneumophila str. Paris]
gi|53752021|emb|CAH13447.1| hypothetical protein lpp2294 [Legionella pneumophila str. Paris]
Length = 589
Score = 258 bits (659), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 165/433 (38%), Positives = 244/433 (56%), Gaps = 31/433 (7%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F S L + L+ + PIQA T ++L+G D + A+TG GKT AF LPIL++L
Sbjct: 9 STFNFSSALNKALEDMKFITPSPIQAQTIPLILEGRDAIALAQTGTGKTAAFALPILQNL 68
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV---YGGAVGLTSCCLYGGAPYH 228
+ P ++ + L+L PTRELA QV E F++ Y V + C GG Y
Sbjct: 69 S--PEISTTQA--------LILAPTRELAIQVAEQFELLSKYQRNVTIAVLC--GGQEYG 116
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q +L+ G VV+GTPGRI DHI++G + L++LK +LDEADEMLRMGF+EDVE IL K
Sbjct: 117 RQLKQLRSGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEK 176
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSS 346
+ + K Q LFSAT+P ++ I+ +L +D +I++ +M+ +T ++ L S
Sbjct: 177 LPE--KKQMALFSATMPYRIRQIANTYL-NDPASIEI----RMETATVKSIEQRFLFASV 229
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTL 402
+ + ++ G I+F TK S ++A+LL A A+HGDI QS RE +
Sbjct: 230 HQKPDALIRVLEVEDYQG-VIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERII 288
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
A F+ G LVAT+VAARGLD+ V +I + P D E Y+HR GRTGRAG +GV ++
Sbjct: 289 AQFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILF 348
Query: 463 YDPRKSS-VSKIERESGVKFEHISAPQPADIAKAAGVEAAETI-TQVSDSVIPAFKSAAE 520
P++S +S IER + + E + P I A I T+++ + ++K E
Sbjct: 349 VTPKESRLISSIERHTRQRIEKVQVPNDHMIQMARQQRFMSNITTRLNHEHVYSYKRIVE 408
Query: 521 ELLNNSGLSAAEL 533
E + +SA ++
Sbjct: 409 EYIKEHDVSAVDV 421
>gi|352081054|ref|ZP_08951932.1| DEAD/DEAH box helicase domain protein [Rhodanobacter sp. 2APBS1]
gi|351683095|gb|EHA66179.1| DEAD/DEAH box helicase domain protein [Rhodanobacter sp. 2APBS1]
Length = 619
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 150/370 (40%), Positives = 209/370 (56%), Gaps = 22/370 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G ES PIQA T +L+G D++G+A+TG GKT AF LPIL + P K
Sbjct: 28 LADVGYESPSPIQAATIPPLLEGRDVLGQAQTGTGKTAAFALPILSRIERRPGK------ 81
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P LVL PTRELA QV E F Y V G +YGG Y Q LK+G+ VV+
Sbjct: 82 ----PQALVLAPTRELAIQVAEAFQTYAAHVPGFQVLPIYGGQSYGPQLHSLKRGVHVVV 137
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+++G +DLS LKF VLDEADEMLRMGF++DVE +L +V LFSA
Sbjct: 138 GTPGRVIDHLDKGTLDLSELKFLVLDEADEMLRMGFIDDVEKVLQATPPGRQV--ALFSA 195
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ I+ + L K+ +++ + N+ S + + I+
Sbjct: 196 TMPAPIRKIAQRHL---KEPVEVTIKSSTTTAANIHQRYWFVSGMHKLDALTRILEAEPF 252
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
IIF TK++ +LA+ L A A++GDI Q+QRE + + GK LVAT+V
Sbjct: 253 DA-MIIFARTKQATEELAEKLQARGLAAAAINGDIAQAQRERVIQQLKDGKLDILVATDV 311
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERES 477
AARGLD+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR + + IER +
Sbjct: 312 AARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLHAIERAT 371
Query: 478 GVKFEHISAP 487
E + P
Sbjct: 372 RQPIEQMQLP 381
>gi|19552380|ref|NP_600382.1| helicase [Corynebacterium glutamicum ATCC 13032]
gi|21323923|dbj|BAB98549.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum
ATCC 13032]
gi|385143290|emb|CCH24329.1| putative helicase [Corynebacterium glutamicum K051]
Length = 732
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 163/459 (35%), Positives = 248/459 (54%), Gaps = 26/459 (5%)
Query: 100 QERGESEHPNAVSRFR-ISVPLR--EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTG 156
Q ES A S F + +P R + ++ G E+ PIQA T ++++G D+VG A+TG
Sbjct: 90 QPSNESSSTEAKSGFDALGLPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTG 149
Query: 157 QGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG- 215
GKT AF LPIL + R+P LVL PTRELA QV + F + VG
Sbjct: 150 TGKTAAFALPILARIDKSV----------RSPQALVLAPTRELALQVADSFQSFADHVGG 199
Query: 216 LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275
L +YGG Y Q L++G +V+GTPGRI DH+E+G++D+S L+F VLDEADEML
Sbjct: 200 LNVLPIYGGQAYGIQLSGLRRGAHIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLN 259
Query: 276 MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335
MGF EDVE IL D +V LFSAT+P+ ++ +S ++L + ++ + + +T
Sbjct: 260 MGFQEDVERILEDTPDEKQVA--LFSATMPNGIRRLSKQYLNN---PAEITVKSETRTNT 314
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHG 391
N+ L + + + I+ I+F TK ++A+ L A A++G
Sbjct: 315 NITQRFLNVAHRNKMDALTRILEVTEFEA-MIMFVRTKHETEEVAEKLRARGFSAAAING 373
Query: 392 DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451
DI Q+QRE T+ + G+ LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTG
Sbjct: 374 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTG 433
Query: 452 RAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQ-VSD 509
RAG TG A++ PR + + IER + + P + V+ A++IT+ + D
Sbjct: 434 RAGRTGEAILFVTPRERRMLRSIERATNAPLHEMELPTVDQVNDFRKVKFADSITKSLED 493
Query: 510 SVIPAFKSAAEELLNNSGLSAAELLAKALAKAVVSAFLF 548
+ F++ +E + + ++ A +A FL
Sbjct: 494 KQMDLFRTLVKEYSQANDVPLEDIAAALATQAQSGDFLL 532
>gi|397668007|ref|YP_006509544.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila]
gi|395131418|emb|CCD09686.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila]
Length = 589
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 165/433 (38%), Positives = 244/433 (56%), Gaps = 31/433 (7%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F S L + L+ + PIQA T ++L+G D + A+TG GKT AF LPIL++L
Sbjct: 9 STFNFSSALNKALEDMKFITPSPIQAQTIPLILEGRDAIALAQTGTGKTAAFALPILQNL 68
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV---YGGAVGLTSCCLYGGAPYH 228
+ P ++ + L+L PTRELA QV E F++ Y V + C GG Y
Sbjct: 69 S--PEISTTQA--------LILAPTRELAIQVAEQFELLSKYQRNVTIAVLC--GGQEYG 116
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q +L+ G VV+GTPGRI DHI++G + L++LK +LDEADEMLRMGF+EDVE IL K
Sbjct: 117 RQLKQLRSGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEK 176
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSS 346
+ + K Q LFSAT+P ++ I+ +L +D +I++ +M+ +T ++ L S
Sbjct: 177 LPE--KKQMALFSATMPYRIRQIANTYL-NDPASIEI----RMETATVKSIEQRFLFASV 229
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTL 402
+ + ++ G I+F TK S ++A+LL A A+HGDI QS RE +
Sbjct: 230 HQKPDALIRVLEVEDYQG-VIVFVRTKSSTEEVAELLQQYGLRAMAIHGDITQSLRERII 288
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
A F+ G LVAT+VAARGLD+ V +I + P D E Y+HR GRTGRAG +GV ++
Sbjct: 289 AQFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILF 348
Query: 463 YDPRKSS-VSKIERESGVKFEHISAPQPADIAKAAGVEAAETI-TQVSDSVIPAFKSAAE 520
P++S +S IER + + E + P I A I T+++ + ++K E
Sbjct: 349 VTPKESRLISSIERHTRQRIEKVQVPNDHMIQMARQQRFMSNITTRLNHEHVYSYKRIVE 408
Query: 521 ELLNNSGLSAAEL 533
E + +SA ++
Sbjct: 409 EYIKEHDVSAVDV 421
>gi|54295187|ref|YP_127602.1| hypothetical protein lpl2267 [Legionella pneumophila str. Lens]
gi|53755019|emb|CAH16507.1| hypothetical protein lpl2267 [Legionella pneumophila str. Lens]
Length = 589
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 165/433 (38%), Positives = 244/433 (56%), Gaps = 31/433 (7%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F S L + L+ + PIQA T ++L G D + A+TG GKT AF LPIL++L
Sbjct: 9 STFNFSSALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQNL 68
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV---YGGAVGLTSCCLYGGAPYH 228
+ P ++ + L+L PTRELA QV E F++ Y V + C GG Y
Sbjct: 69 S--PEISTTQA--------LILAPTRELAIQVAEQFELLSKYQRNVTIAVLC--GGQEYG 116
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q +L+ G VV+GTPGRI DHI++G + L++LK +LDEADEMLRMGF+EDVE IL K
Sbjct: 117 RQLKQLRSGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEK 176
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSS 346
+ + K Q LFSAT+P ++ I+ +L +D +I++ +M+ +T ++ L S
Sbjct: 177 LPE--KKQMALFSATMPYRIRQIANTYL-NDPASIEI----RMETATVKSIEQRFLFASV 229
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTL 402
+ + ++ G I+F TK S ++A+LL A A+HGDI QS RE +
Sbjct: 230 HQKPDALIRVLEVEDYQG-VIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERII 288
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
A F+ G LVAT+VAARGLD+ V +I + P D E Y+HR GRTGRAG +GV ++
Sbjct: 289 AQFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILF 348
Query: 463 YDPRKSS-VSKIERESGVKFEHISAPQPADIAKAAGVEAAETI-TQVSDSVIPAFKSAAE 520
P++S +S IER + + E + P I A I T+++ + ++K E
Sbjct: 349 VTPKESRLISSIERHTRQRIEKVQVPNDHMIQMARQQRFMSNITTRLNHEHVYSYKRIVE 408
Query: 521 ELLNNSGLSAAEL 533
E + + +SA ++
Sbjct: 409 EYIKDHDVSAVDV 421
>gi|300741894|ref|ZP_07071915.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
gi|300381079|gb|EFJ77641.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
Length = 582
Score = 258 bits (658), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 145/361 (40%), Positives = 205/361 (56%), Gaps = 7/361 (1%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P + + F + + + L + GI S FPIQ MT + L G D++G+A+TG GKTL F LP
Sbjct: 22 PKSFADFGVRQDISDALAAVGIVSPFPIQEMTLPVALAGHDIIGQAKTGTGKTLGFGLPT 81
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
++ + AP L+L+PTRELA QV D V LYGG PY
Sbjct: 82 IQRVVGRDDDQWGSLQKPGAPQALILVPTRELAIQVGNDLAVASKLRNARVATLYGGVPY 141
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q +L KG++VV+GTPGR+ D + G + L+ +K VLDEADEML +GF+ VE I+G
Sbjct: 142 EPQVEQLTKGLEVVVGTPGRLIDLYQHGALTLTQVKTVVLDEADEMLDLGFLPSVEKIMG 201
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
+ QT+LFSAT+P V ++ K++ + K ++R +V
Sbjct: 202 YL--PTDRQTMLFSATMPGPVITMARKYMTKPMHISAADPEDHAKTKASIRQVVYRVHHM 259
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLA 403
+ +++ I+R + GRT+IFT+TK A+++AD L A LHGD+ Q RE L
Sbjct: 260 DKDEMLGRILRAHGR-GRTVIFTKTKRDAARVADELIARGFAAAPLHGDLNQGAREQALR 318
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
FR+GK LVAT+VAARG+D+ DV +I P D + Y+HR+GRTGRAG+ G AV
Sbjct: 319 AFRNGKVDILVATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGHEGTAVTFV 378
Query: 464 D 464
D
Sbjct: 379 D 379
>gi|184200491|ref|YP_001854698.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201]
gi|183580721|dbj|BAG29192.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201]
Length = 555
Score = 258 bits (658), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 145/375 (38%), Positives = 216/375 (57%), Gaps = 8/375 (2%)
Query: 94 EAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRA 153
E+G + E E ++ + F + + + L + GI S FPIQAMT + L G D++G+A
Sbjct: 17 ESGAQAVEATEPVEESSFADFGVRQDIVDALAAHGITSPFPIQAMTLPIALSGQDIIGQA 76
Query: 154 RTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGA 213
+TG GKTL F +P L+ ++ AP L+++PTRELA QV D +
Sbjct: 77 KTGTGKTLGFGIPALQRAVGRDDAGWEQLAKPGAPQALIVVPTRELAVQVGSDLSIAAKT 136
Query: 214 VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273
+YGG PY +Q +L+KG++VV+GTPGR+ D + +DLS ++ VLDEADEM
Sbjct: 137 RNARVATIYGGRPYESQIAELEKGVEVVVGTPGRLIDLNRQHFLDLSHVRMVVLDEADEM 196
Query: 274 LRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKA 333
L +GF+ DVE +L V QT+LFSAT+P V ++ +++ + I ++
Sbjct: 197 LDLGFLPDVEKLLATVPAVR--QTMLFSATMPGPVVAMARRYM-TRPMHIRAAAPDEGTT 253
Query: 334 STNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARAL 389
++R ++ + +V+ I++ GR+IIFT TK +A++LAD L A L
Sbjct: 254 KKDIRQVIYRAHHLDKDEVVARILQAEGR-GRSIIFTRTKRAAAKLADELIHRGFAAAPL 312
Query: 390 HGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 449
HGD+ Q RE L FR+ K LVAT+VAARG+D+ DV +I + P D + Y+HR+GR
Sbjct: 313 HGDLGQGAREQALRAFRNSKVDVLVATDVAARGIDVEDVTHVINFQCPEDEKTYLHRTGR 372
Query: 450 TGRAGNTGVAVMLYD 464
TGRAGN G A+ D
Sbjct: 373 TGRAGNKGTAITFVD 387
>gi|300783035|ref|YP_003763326.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
gi|384146259|ref|YP_005529075.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei S699]
gi|399534921|ref|YP_006547583.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei S699]
gi|299792549|gb|ADJ42924.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
gi|340524413|gb|AEK39618.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei S699]
gi|398315691|gb|AFO74638.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei S699]
Length = 598
Score = 258 bits (658), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 163/386 (42%), Positives = 220/386 (56%), Gaps = 26/386 (6%)
Query: 94 EAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRA 153
+AGVE E E+P S F + + + L GIE F IQ +T + + G DL+G+A
Sbjct: 64 QAGVEV----EPENPTFAS-FGVKPEIVKALGEAGIERTFAIQELTLPLAMAGDDLIGQA 118
Query: 154 RTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGA 213
RTG GKTL F +P+L + + G G P VLV++PTREL QV D G
Sbjct: 119 RTGMGKTLGFGVPLLHRV--------QVPGDG-TPQVLVVVPTRELCIQVANDLKGAGKH 169
Query: 214 VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273
+G+ + +YGG PY Q L+KGIDVVIGTPGR+ D E+ ++ L ++ VLDEADEM
Sbjct: 170 LGIRTLAIYGGRPYEPQIEALRKGIDVVIGTPGRLLDLAEQQHLVLGKVRGLVLDEADEM 229
Query: 274 LRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKA 333
L +GF+ D+E IL V D QT+LFSAT+P + ++ FL+ I N+
Sbjct: 230 LDLGFLPDIERILRMVPDER--QTMLFSATMPGPIITLARTFLRQPTH-IRAEENDASAI 286
Query: 334 STNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARAL 389
V S + +VI +++ G T+IF+ TK +A ++AD L A A+
Sbjct: 287 HERTTQFVYRAHSMDKPEVIARVLQAEDR-GLTMIFSRTKRTAQKVADDLVERGFAAAAV 345
Query: 390 HGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 449
HGD+ Q RE L FRSGK LVAT+VAARG+DI+DV +I + P D + Y+HR GR
Sbjct: 346 HGDLGQGAREQALRAFRSGKVDVLVATDVAARGIDIDDVTHVINYQCPDDEKTYVHRIGR 405
Query: 450 TGRAGNTGVAVMLYD----PRKSSVS 471
TGRAG TGVAV L D PR +S
Sbjct: 406 TGRAGRTGVAVTLVDWDEMPRWKLIS 431
>gi|295394794|ref|ZP_06805009.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
49030]
gi|294972390|gb|EFG48250.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
49030]
Length = 586
Score = 257 bits (657), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 172/457 (37%), Positives = 243/457 (53%), Gaps = 32/457 (7%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES PIQA T +L G D++G A+TG GKT AF LP+L S+ S
Sbjct: 33 GYESPSPIQAKTIPFLLQGRDVIGLAQTGTGKTAAFALPLLSSIAGRERPTS-------- 84
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC-LYGGAPYHAQEFKLKKGIDVVIGTPG 246
P L+L PTRELA QV E Y +G S +YGG Y Q LK+G VV+GTPG
Sbjct: 85 PLALILAPTRELAIQVAEALTSYATHLGDFSVLPIYGGQSYTPQISGLKRGAHVVVGTPG 144
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHI+RG +DLS ++ VLDEADEML+MGF ED+E I K +V LFSAT+P+
Sbjct: 145 RVIDHIKRGTLDLSHVEHLVLDEADEMLKMGFQEDIEEIFAKTNPDRQVA--LFSATMPA 202
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ I+ ++L +D + + K S N+R L S + + I+ G
Sbjct: 203 SIHRITGQYL-NDPAEVRI--QAKTTTSANIRQRYLTVMHSHKLDALTRILEVEKYDG-I 258
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK+ +LAD L A A++GDI Q RE T+ RSG LVAT+VAARG
Sbjct: 259 IMFVRTKQETEELADKLKARGFSAAAINGDIPQVVRERTVEALRSGSIDILVATDVAARG 318
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKF 481
LD+ + L++ + P D E+Y+HR GRTGRAG TG A++ PR++ + K IE+ + K
Sbjct: 319 LDVERISLVVNFDIPHDTESYVHRIGRTGRAGRTGEAILFVTPRENRLLKAIEKATRQKV 378
Query: 482 EHISAPQPADIAKAAGVEAAETITQVSDSV-IPAFKSAAEELLNNSGLSAAELLAKALAK 540
E + P ++ + + I+ +S + + EE +N + AE +A ALA
Sbjct: 379 EPLVMPTVEELTVTRTQKFQDRISHTLNSQDLSELRPVIEEYVNTHNVP-AEDVAAALAS 437
Query: 541 AVVSAFLFS----------SSSNSLSLTSGTMCFFRL 567
V+ + +S N + T+ M +RL
Sbjct: 438 LVLDGATLTAEPLPEPQARASRNERARTADGMTTYRL 474
>gi|148359886|ref|YP_001251093.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby]
gi|296107936|ref|YP_003619637.1| ATP-dependent RNA helicase DeaD [Legionella pneumophila 2300/99
Alcoy]
gi|148281659|gb|ABQ55747.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby]
gi|295649838|gb|ADG25685.1| ATP-dependent RNA helicase DeaD [Legionella pneumophila 2300/99
Alcoy]
Length = 589
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 165/433 (38%), Positives = 243/433 (56%), Gaps = 31/433 (7%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F S L + L+ + PIQA T ++L G D + A+TG GKT AF LPIL++L
Sbjct: 9 STFNFSSALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQNL 68
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV---YGGAVGLTSCCLYGGAPYH 228
+ P ++ + L+L PTRELA QV E F++ Y V + C GG Y
Sbjct: 69 S--PEISTTQA--------LILAPTRELAIQVAEQFELLSKYQRNVTIAVLC--GGQEYG 116
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q +L+ G VV+GTPGRI DHI++G + L++LK +LDEADEMLRMGF+EDVE IL K
Sbjct: 117 RQLKQLRSGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEK 176
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSS 346
+ + K Q LFSAT+P ++ I+ +L +D +I++ +M+ +T ++ L S
Sbjct: 177 LPE--KKQMALFSATMPYRIRQIANTYL-NDPASIEI----RMETATVKSIEQRFLFASV 229
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTL 402
+ + ++ G I+F TK S ++A+LL A A+HGDI QS RE +
Sbjct: 230 HQKPDALIRVLEVEDYQG-VIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERII 288
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
A F+ G LVAT+VAARGLD+ V +I + P D E Y+HR GRTGRAG +GV ++
Sbjct: 289 AQFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILF 348
Query: 463 YDPRKSS-VSKIERESGVKFEHISAPQPADIAKAAGVEAAETI-TQVSDSVIPAFKSAAE 520
P++S +S IER + + E + P I A I T+++ + ++K E
Sbjct: 349 VTPKESRLISSIERHTRQRIEKVQVPNDHMIQMARQQRFMSNITTRLNHEHVYSYKRIVE 408
Query: 521 ELLNNSGLSAAEL 533
E + +SA ++
Sbjct: 409 EYIKEHDVSAVDV 421
>gi|52842555|ref|YP_096354.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|378778243|ref|YP_005186682.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|52629666|gb|AAU28407.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|364509059|gb|AEW52583.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila ATCC 43290]
Length = 589
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 165/433 (38%), Positives = 243/433 (56%), Gaps = 31/433 (7%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F S L + L+ + PIQA T ++L G D + A+TG GKT AF LPIL++L
Sbjct: 9 STFNFSNALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQNL 68
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV---YGGAVGLTSCCLYGGAPYH 228
+ P ++ + L+L PTRELA QV E F++ Y V + C GG Y
Sbjct: 69 S--PEISTTQA--------LILAPTRELAIQVAEQFELLSKYQRNVTIAVLC--GGQEYG 116
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q +L+ G VV+GTPGRI DHI++G + L++LK +LDEADEMLRMGF+EDVE IL K
Sbjct: 117 RQLKQLRSGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEK 176
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSS 346
+ + K Q LFSAT+P ++ I+ +L +D +I++ +M+ +T ++ L S
Sbjct: 177 LPE--KKQMALFSATMPYRIRQIANTYL-NDPASIEI----RMETATVKSIEQRFLFASV 229
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTL 402
+ + ++ G I+F TK S ++A+LL A A+HGDI QS RE +
Sbjct: 230 HQKPDALIRVLEVEDYQG-VIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERII 288
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
A F+ G LVAT+VAARGLD+ V +I + P D E Y+HR GRTGRAG +GV ++
Sbjct: 289 AQFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILF 348
Query: 463 YDPRKSS-VSKIERESGVKFEHISAPQPADIAKAAGVEAAETI-TQVSDSVIPAFKSAAE 520
P++S +S IER + + E + P I A I T+++ + ++K E
Sbjct: 349 VTPKESRLISSIERHTRQRIEKVQVPNDHMIQMARQQRFMSNITTRLNHEHVYSYKRIVE 408
Query: 521 ELLNNSGLSAAEL 533
E + +SA ++
Sbjct: 409 EYIKEHDVSAVDV 421
>gi|315604928|ref|ZP_07879985.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 180
str. F0310]
gi|315313364|gb|EFU61424.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 180
str. F0310]
Length = 598
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 155/405 (38%), Positives = 234/405 (57%), Gaps = 30/405 (7%)
Query: 89 AKVEPEAGVEEQ------ERGESE-HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFD 141
+ PEA +E+ ++G+ + + + F ++ P+ + L+ KGI FPIQA+T
Sbjct: 43 GNIHPEAPAQEEATPDITDKGDEDLDKKSFADFGVTDPIVDALEDKGITHPFPIQALTLG 102
Query: 142 MVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY-----GRAPSVLVLLPT 196
LD D++G+A+TG GKTL F +P+LE + A + GY P L++LPT
Sbjct: 103 PALDRHDIIGQAKTGTGKTLGFGIPVLEDVI-----APDEEGYEDLLNPNKPQALIILPT 157
Query: 197 RELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN 256
REL KQV +D + +YGG + Q L +G D+V+GTPGR+ D + +G+
Sbjct: 158 RELTKQVAQDLRDAAKYLSTRIVEIYGGVAFEPQIEALTRGADIVVGTPGRLIDLLRKGH 217
Query: 257 IDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316
+ LS ++ VLDEADEML +GF+ DVE +LG+V + N+ T+LFSAT+P V ++ +F+
Sbjct: 218 LHLSGVETVVLDEADEMLDLGFLPDVETLLGRVPE-NR-HTMLFSATMPGPVVALARRFM 275
Query: 317 KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESA 376
+++ + V+ ++ + + +V+ I++ G RT+IF TK +A
Sbjct: 276 VHPTHIRAQDPDDQNQTVNTVKQVIYRVHAMNKVEVVARILQAEGRG-RTVIFCRTKRTA 334
Query: 377 SQLADLLPGAR-----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLI 431
++L + L AR ALHGD+ Q RE L FR GK LVAT+VAARG+D++DV +
Sbjct: 335 ARLGEDLT-ARGFAVGALHGDLGQGAREQALRAFRKGKVDVLVATDVAARGIDVDDVTHV 393
Query: 432 IQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PRKSSVSK 472
I + P D + YIHR GRTGRAGN+G AV D PR S +SK
Sbjct: 394 INYQCPEDEKIYIHRIGRTGRAGNSGTAVTFVDWDDTPRWSLISK 438
>gi|407698821|ref|YP_006823608.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Black Sea
11']
gi|407247968|gb|AFT77153.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Black Sea
11']
Length = 608
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 168/434 (38%), Positives = 244/434 (56%), Gaps = 34/434 (7%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
P+ + L+ G E PIQA + ++L G DL+G+A+TG GKT AF LP+L ++ P +
Sbjct: 17 PILQALEKVGYEKPSPIQAESIPLLLKGHDLLGQAQTGTGKTAAFALPMLANID--PEQ- 73
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKG 237
R P +LVL PTRELA QV E F VY + + +YGG Y Q +LK+G
Sbjct: 74 -------RKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQLKRG 126
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
+ VV+GTPGRI DHI+R +DLS LKF VLDEADEMLRMGF++DVELIL + QT
Sbjct: 127 VQVVVGTPGRIIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPEER--QT 184
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P +K I+ ++LK D K + + K+ ++ +R + + + + I+
Sbjct: 185 ALFSATMPGPIKKITQRYLK-DPKHVKIAS--KVSTASTIRQRYCQIAPHHKLEALTRIM 241
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPGARA-----LHGDIQQSQREVTLAGFRSGKFMT 412
G IIF TK + +LAD L AR L+GDI Q+ RE T+ + GK
Sbjct: 242 EVEVFDG-MIIFVRTKTATVELADKL-SARGYDVEPLNGDIPQAARERTVEKLKQGKIDI 299
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVS 471
LVAT+V ARGLD+ V +I + P D E+Y+HR GRTGRAG G A++ R K +
Sbjct: 300 LVATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLLF 359
Query: 472 KIERESGVKFEHISAPQPADIAKAAGVEAAETITQVS-----DSVIPAFKSAAEELLNNS 526
IE+ + E + P ++I + +++ + + +S++P E++
Sbjct: 360 SIEKTTKQPIEAMPIPSISEINETRLSRFKQSVAEATQDDSIESLMPIV-----EMIKEE 414
Query: 527 GLSAAELLAKALAK 540
++ E+L AL K
Sbjct: 415 NEASPEVLMAALLK 428
>gi|333894503|ref|YP_004468378.1| ATP-dependent RNA helicase [Alteromonas sp. SN2]
gi|332994521|gb|AEF04576.1| ATP-dependent RNA helicase [Alteromonas sp. SN2]
Length = 588
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 167/439 (38%), Positives = 246/439 (56%), Gaps = 34/439 (7%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
++ P+ + L+ G E PIQA + ++L+G DL+G+A+TG GKT AF LP+L ++
Sbjct: 12 LKLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANI-- 69
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEF 232
P + R P +LVL PTRELA QV E F VY + + +YGG Y Q
Sbjct: 70 DPEQ--------RKPQLLVLAPTRELAIQVAEAFQVYASFSHKIKVLPVYGGQSYDNQIR 121
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
+LK+G+ VV+GTPGR+ DHI+R +DLS LKF VLDEADEMLRMGF++DVELIL
Sbjct: 122 QLKRGVQVVVGTPGRVIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHA--P 179
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QT LFSAT+P +K I+ ++LK D K + + K+ ++ +R + + +
Sbjct: 180 AERQTALFSATMPGPIKKITQRYLK-DPKHVKIAS--KVSTASTIRQRYCQVAPHHKLEA 236
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPGARA-----LHGDIQQSQREVTLAGFRS 407
+ I+ G IIF TK + +LAD L AR L+GDI Q+ RE T+ +
Sbjct: 237 LTRIMEVERFDG-MIIFVRTKTATVELADKL-SARGYDVEPLNGDIPQNARERTVDKLKQ 294
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR- 466
G LVAT+V ARGLD+ V +I + P D E+Y+HR GRTGRAG TG A++ R
Sbjct: 295 GNIDILVATDVVARGLDVERVSHVINYDVPYDSESYVHRIGRTGRAGRTGDAILFISHRE 354
Query: 467 KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVS-----DSVIPAFKSAAEE 521
K + IE+ + E + P ++I + +++ + +++IP E
Sbjct: 355 KRMLFSIEKTTKQPIEVMPIPSISEINETRLSRFKQSVIDATQDDSIETLIPLV-----E 409
Query: 522 LLNNSGLSAAELLAKALAK 540
++ ++ E+L AL K
Sbjct: 410 MIKEEAEASPEVLMAALLK 428
>gi|389797680|ref|ZP_10200720.1| DNA/RNA helicase [Rhodanobacter sp. 116-2]
gi|388446754|gb|EIM02774.1| DNA/RNA helicase [Rhodanobacter sp. 116-2]
Length = 609
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 150/370 (40%), Positives = 209/370 (56%), Gaps = 22/370 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G ES PIQA T +L+G D++G+A+TG GKT AF LPIL + P K
Sbjct: 18 LADVGYESPSPIQAATIPPLLEGRDVLGQAQTGTGKTAAFALPILSRIERRPGK------ 71
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P LVL PTRELA QV E F Y V G +YGG Y Q LK+G+ VV+
Sbjct: 72 ----PQALVLAPTRELAIQVAEAFQTYAAHVPGFQVLPIYGGQSYGPQLHSLKRGVHVVV 127
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+++G +DLS LKF VLDEADEMLRMGF++DVE +L +V LFSA
Sbjct: 128 GTPGRVIDHLDKGTLDLSELKFLVLDEADEMLRMGFIDDVEKVLQATPPGRQV--ALFSA 185
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ I+ + LK+ +++ + N+ S + + I+
Sbjct: 186 TMPAPIRKIAQRHLKN---PVEVTIKAATTTAANIHQRYWFVSGMHKLDALTRILEAEPF 242
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
IIF TK++ +LA+ L A A++GDI Q+QRE + + GK LVAT+V
Sbjct: 243 DA-MIIFARTKQATEELAEKLQARGLAAAAINGDIAQAQRERVIQQLKDGKLDILVATDV 301
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERES 477
AARGLD+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR + + IER +
Sbjct: 302 AARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLHAIERAT 361
Query: 478 GVKFEHISAP 487
E + P
Sbjct: 362 RQPIEQMQLP 371
>gi|396583527|ref|ZP_10484060.1| DEAD/DEAH box helicase [Actinomyces sp. ICM47]
gi|395549007|gb|EJG16160.1| DEAD/DEAH box helicase [Actinomyces sp. ICM47]
Length = 615
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 150/373 (40%), Positives = 222/373 (59%), Gaps = 23/373 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F ++ P+ + L+ KGI FPIQA+T LD D++G+A+TG GKTL F +P+LE +
Sbjct: 76 FGVTDPIVDALEDKGITHPFPIQALTLGPALDRHDIIGQAKTGTGKTLGFGIPVLEDVI- 134
Query: 174 GPTKASKKTGY-----GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYH 228
A + GY P L++LPTREL KQV +D + +YGG +
Sbjct: 135 ----APDEEGYEDLLNPNQPQALIILPTRELTKQVAQDLREAAKYLSTRIVEIYGGVAFE 190
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q L++G D+V+GTPGR+ D + +G++ LS ++ VLDEADEML +GF+ DVE +LG+
Sbjct: 191 PQIEALQRGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLGFLPDVETLLGR 250
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348
V + N+ T+LFSAT+P V ++ +F+ +++ + V+ ++ +
Sbjct: 251 VPE-NR-HTMLFSATMPGPVVALARRFMVHPTHIRAQDPDDQNQTVNTVKQVIYRVHAMN 308
Query: 349 RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGDIQQSQREVTLA 403
+ +VI I++ G RT+IF TK +A++L + L AR ALHGD+ Q RE L
Sbjct: 309 KVEVISRILQAEGRG-RTVIFCRTKRTAARLGEDL-TARGFAVGALHGDLGQGAREQALR 366
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
FR+GK LVAT+VAARG+D++DV +I + P D + YIHR GRTGRAG++G AV
Sbjct: 367 AFRNGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAGHSGTAVTFV 426
Query: 464 D----PRKSSVSK 472
D PR S +SK
Sbjct: 427 DWDDTPRWSLISK 439
>gi|357406358|ref|YP_004918282.1| Cold-shock DEAD box protein A-like protein [Methylomicrobium
alcaliphilum 20Z]
gi|351719023|emb|CCE24697.1| Cold-shock DEAD box protein A homolog [Methylomicrobium
alcaliphilum 20Z]
Length = 578
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 173/433 (39%), Positives = 238/433 (54%), Gaps = 28/433 (6%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
P+ + L G ES PIQA T ++ G D++G+A+TG GKT AF LPIL L
Sbjct: 19 PVLKALDDVGYESPSPIQAQTIPYLMQGKDVLGQAQTGTGKTAAFALPILSRLD------ 72
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKG 237
KKT P VLVL PTRELA QV E F Y + G +YGG Y Q +LK+G
Sbjct: 73 LKKT----EPQVLVLAPTRELAIQVAEAFQRYAAHLKGFHVLPIYGGQDYTTQLRQLKRG 128
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
V++GTPGR+ DH+ +G + L L VLDEADEMLRMGF++DVE IL + + Q
Sbjct: 129 PHVIVGTPGRVMDHMRKGTLRLGELSCLVLDEADEMLRMGFIDDVEWILEQT--PKQRQI 186
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSSSARSQVIPD 355
LFSAT+P+ ++ I+ +L D + I + K++ ST +R S + +
Sbjct: 187 ALFSATMPAPIRKIAQTYL-HDPEEITV----KVRTSTAETIRQRYWLVSGVHKLDALTR 241
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFM 411
I+ + G IIF TK + +LA+ L A A++GD+ Q RE T+A ++GK
Sbjct: 242 ILESETFDG-IIIFVRTKTATVELAEKLEARGYSAAAINGDMSQVLRERTIAHLKNGKLD 300
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSV 470
L+AT+VAARGLD+ V +I + P D EAYIHR GRTGRAG TG A++ PR + +
Sbjct: 301 ILIATDVAARGLDVERVSHVINYDIPYDTEAYIHRIGRTGRAGRTGDAILFVAPRERRLL 360
Query: 471 SKIERESGVKFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKSAAEELLNNSGLS 529
S IE+ + K E + P I + IT ++ + F E+ N +S
Sbjct: 361 SNIEKATRQKVEEMGLPSTEIINNKRIARFKQRITDTLAAEELSFFIQLMEQYQNEHNVS 420
Query: 530 AAELLAKALAKAV 542
A E +A ALAK V
Sbjct: 421 AIE-IAAALAKQV 432
>gi|78186470|ref|YP_374513.1| DEAD/DEAH box helicase-like protein [Chlorobium luteolum DSM 273]
gi|78166372|gb|ABB23470.1| ATP-dependent RNA helicase CsdA [Chlorobium luteolum DSM 273]
Length = 590
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 156/392 (39%), Positives = 226/392 (57%), Gaps = 25/392 (6%)
Query: 105 SEHPNAVSRF---RISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTL 161
+E P + F +S P+ LK G E+ PIQA T ++L+G D++G+A+TG GKT
Sbjct: 3 AETPEPIRNFTDLNLSEPIMRALKEVGYETPTPIQARTIPLMLEGRDVLGQAQTGTGKTA 62
Query: 162 AFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCC 220
AF LPIL + T P VLVL PTRELA QV E F Y + G
Sbjct: 63 AFALPILSGIDLSLTD----------PQVLVLAPTRELAIQVAEAFHKYAEYLKGFHVLP 112
Query: 221 LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVE 280
+YGG Y Q LK+G+ VV+GTPGR+ DH+ RG+++L SL+ VLDEADEMLRMGF++
Sbjct: 113 IYGGQDYGGQLRMLKRGVHVVVGTPGRVMDHMRRGSLNLDSLQCLVLDEADEMLRMGFID 172
Query: 281 DVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340
DVE ILG E + Q LFSAT+P+ ++ I+ K+L S + + + G + R+
Sbjct: 173 DVEWILG--ETPKERQVALFSATMPAPIRRIAQKYLNSPAE-VTIEGKTTTVETIRQRYW 229
Query: 341 VLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQS 396
++ S + ++ I+ G +IF TK +LA+ L A AL+GD+ Q+
Sbjct: 230 IV--GGSHKLDILTRILEVEPFEG-MLIFVRTKTMTLELAEKLQARGYAAAALNGDMVQN 286
Query: 397 QREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNT 456
QRE T+ + G ++AT+VAARGLD+ + +I + P D E+Y+HR GRTGRAG +
Sbjct: 287 QRERTVDQLKDGSLNIVIATDVAARGLDVERISHVINYDVPYDTESYVHRIGRTGRAGRS 346
Query: 457 GVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487
G A++ PR K+ + IE+ + + E + P
Sbjct: 347 GEAILFVAPREKNMLYAIEKATRKRIELMELP 378
>gi|383767838|ref|YP_005446821.1| ATP-dependent RNA helicase DeaD [Phycisphaera mikurensis NBRC
102666]
gi|381388108|dbj|BAM04924.1| ATP-dependent RNA helicase DeaD [Phycisphaera mikurensis NBRC
102666]
Length = 693
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 155/378 (41%), Positives = 213/378 (56%), Gaps = 17/378 (4%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA-SKKT 182
L+ G E PIQA VL G D++G+A+TG GKT AF LPIL L P S +
Sbjct: 74 LERIGYEQPSPIQAAIIPAVLSGVDVIGQAQTGTGKTAAFALPILSKLQGVPAGGGSVRF 133
Query: 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVV 241
AP+ LVL PTRELA QV E F Y + G +YGGA Y Q +G+ VV
Sbjct: 134 EAPAAPTALVLAPTRELAIQVAEAFQTYAQKMPGFHVVPVYGGADYTTQLRAFSRGVHVV 193
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
+GTPGR+ DH++RG +++ L+ VLDEADEMLRMGF+EDVE +L ++ DA Q LFS
Sbjct: 194 VGTPGRVLDHMKRGTLNVQHLQHLVLDEADEMLRMGFIEDVEYVLDEIPDA--AQVALFS 251
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
AT+P+ +K I+ LK D + I G K + R+ +P I + R
Sbjct: 252 ATMPAQIKRIAQSKLK-DPQHIRTAGKTKTAETVRQRYAYVPGRRK-----INALTRVLD 305
Query: 362 SGGR--TIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
+ ++F T+ + +++AD L A AL G++ Q QRE + + G+ +VA
Sbjct: 306 AEPHEAVLVFVRTRNACTEVADQLQARGHAAEALSGEVPQRQRERIVESLKDGRIDVVVA 365
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIE 474
T+VAARGLD+ V +I + P D EAYIHR GRTGRAG +G A++ PR K + ++E
Sbjct: 366 TDVAARGLDVERVGHVINYDMPTDPEAYIHRIGRTGRAGRSGEAILFVTPREKRMLGELE 425
Query: 475 RESGVKFEHISAPQPADI 492
R +G E + P DI
Sbjct: 426 RITGQAIEEMQPPSDKDI 443
>gi|318040201|ref|ZP_07972157.1| superfamily II DNA/RNA helicase [Synechococcus sp. CB0101]
Length = 537
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 154/395 (38%), Positives = 226/395 (57%), Gaps = 24/395 (6%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P+ + F + L + L + G E PIQ +L G DLVG+A+TG GKT AF LP+
Sbjct: 77 PSGFASFGFAPELLDALTAIGYEEPSPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPM 136
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAP 226
L +L G R P VLVL PTRELA QV + F Y + L LYGG+
Sbjct: 137 LAALD----------GQQRTPQVLVLTPTRELAIQVADAFKSYAANMPHLRVLPLYGGSD 186
Query: 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286
+ Q +LK+G+ +V+GTPGR+ DH+ +G +DLS L+ VLDEADEMLRMGF++DVE +L
Sbjct: 187 FRDQIVRLKRGVQIVVGTPGRVMDHMRQGTLDLSGLRSLVLDEADEMLRMGFIDDVEWVL 246
Query: 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK-TIDLVGNEKMKASTNVRHIVLPCS 345
++ ++ Q +LFSAT+P ++ IS K+L + TI G + S+ +R + +
Sbjct: 247 EQL--PSQRQVVLFSATMPPEIRRISHKYLNDPAEVTIKTKGAD----SSRIRQRFITVN 300
Query: 346 SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVT 401
+ + + ++ + G IIF TK +A+ L L+GD+ QSQRE T
Sbjct: 301 GPQKLEALTRVLESETKEG-VIIFARTKAITVTVAEALEAKGYDVAVLNGDVAQSQRERT 359
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
+ ++G LVAT+VAARGLD++ + L++ + P D EAY+HR GRTGRAG +G A++
Sbjct: 360 IERLKNGTVDVLVATDVAARGLDVDRITLVVNYDIPFDSEAYVHRVGRTGRAGRSGDAIL 419
Query: 462 LYDPR-KSSVSKIERESGVKFEHISAPQPADIAKA 495
PR + + +ER G E + P A I ++
Sbjct: 420 FVTPRERRFLGGLERAVGRPIEPMQIPSNATINQS 454
>gi|326774180|ref|ZP_08233462.1| ATP-dependent RNA helicase DeaD [Actinomyces viscosus C505]
gi|326636319|gb|EGE37223.1| ATP-dependent RNA helicase DeaD [Actinomyces viscosus C505]
Length = 558
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 156/370 (42%), Positives = 223/370 (60%), Gaps = 17/370 (4%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLT 172
F + + E L +KGI FPIQA+T + L+G D++G+A+TG GKTL F +P+L ++L
Sbjct: 75 FGVEPEICEALDAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLMDTLG 134
Query: 173 NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF 232
G + G +P LV+LPTRELAKQV E+ + +YGG Y Q
Sbjct: 135 PGEEGWDEDPASG-SPQALVILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAYEPQIE 193
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G +VV+GTPGR+ D +ERG +DL+ + VLDEADEML +GF+ DVE IL + A
Sbjct: 194 DLERGAEVVVGTPGRLIDLMERGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILARTR-A 252
Query: 293 NKVQTLLFSATLPSWVKHISTKFL-KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
++ T+LFSAT+P V ++ +++ + G+E M T V+ +V S + +
Sbjct: 253 DR-HTMLFSATMPGAVVALARRYMTRPTHIRAQDPGDEGMTVQT-VQQVVYRTHSMNKVE 310
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGDIQQSQREVTLAGFR 406
V+ I++ GRTIIF TK +A+++AD L AR ALHGD+ Q RE L FR
Sbjct: 311 VVSRILQAEGR-GRTIIFARTKRTAARVADDLR-ARGFATGALHGDLGQGAREQALRAFR 368
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD-- 464
+ K LVAT+VAARG+D++DV +I + P D + Y+HR GRTGRAGN+G AV D
Sbjct: 369 NNKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFVDWD 428
Query: 465 --PRKSSVSK 472
PR ++K
Sbjct: 429 DVPRWRIIAK 438
>gi|343522606|ref|ZP_08759572.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 175 str. F0384]
gi|343402015|gb|EGV14521.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 175 str. F0384]
Length = 558
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 156/370 (42%), Positives = 223/370 (60%), Gaps = 17/370 (4%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLT 172
F + + E L +KGI FPIQA+T + L+G D++G+A+TG GKTL F +P+L ++L
Sbjct: 75 FGVEPEICEALDAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLMDTLG 134
Query: 173 NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF 232
G + G +P LV+LPTRELAKQV E+ + +YGG Y Q
Sbjct: 135 PGEEGWDEDPASG-SPQALVILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAYEPQIE 193
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G +VV+GTPGR+ D +ERG +DL+ + VLDEADEML +GF+ DVE IL + A
Sbjct: 194 DLERGAEVVVGTPGRLIDLMERGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILARTR-A 252
Query: 293 NKVQTLLFSATLPSWVKHISTKFL-KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
++ T+LFSAT+P V ++ +++ + G+E M T V+ +V S + +
Sbjct: 253 DR-HTMLFSATMPGAVVALARRYMTRPTHIRAQDPGDEGMTVQT-VQQVVYRTHSMNKVE 310
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGDIQQSQREVTLAGFR 406
V+ I++ GRTIIF TK +A+++AD L AR ALHGD+ Q RE L FR
Sbjct: 311 VVSRILQAEGR-GRTIIFARTKRTAARVADDLR-ARGFATGALHGDLGQGAREQALRAFR 368
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD-- 464
+ K LVAT+VAARG+D++DV +I + P D + Y+HR GRTGRAGN+G AV D
Sbjct: 369 NNKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFVDWD 428
Query: 465 --PRKSSVSK 472
PR ++K
Sbjct: 429 DVPRWRIIAK 438
>gi|269218758|ref|ZP_06162612.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
str. F0332]
gi|269211869|gb|EEZ78209.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
str. F0332]
Length = 531
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 224/376 (59%), Gaps = 27/376 (7%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F +S P+ + LK KGI FPIQA+T + L G+D++G+A+TG GKTL F +P+LE+ T
Sbjct: 41 FGVSTPIVDALKDKGITHPFPIQALTLPVALRGNDIIGQAKTGTGKTLGFGIPMLEN-TA 99
Query: 174 G---------PTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
G P +A K P LV+LPTRELAKQV E+ L +YGG
Sbjct: 100 GIDEEGWESVPVQARGK------PQGLVILPTRELAKQVAEELRAAAARRRLRIVEVYGG 153
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
Y Q+ LK+G ++V+GTPGR+ D ++ +DL+ ++ VLDEADEML +GF+EDVE
Sbjct: 154 RAYEPQQEALKEGAEIVVGTPGRLVDLMKHRFLDLTYVRTVVLDEADEMLDLGFLEDVEK 213
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344
IL +N+ T+LFSAT+P V ++ +++ ++ +VR +V C
Sbjct: 214 ILASTP-SNR-HTMLFSATMPGPVVAMARRYMSRPTHIRAADPSDTGVTVKSVRQVVYRC 271
Query: 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREV 400
+ +S+V+ I++ G TI+FT TK +A++LA+ L A ALHGD+ Q RE
Sbjct: 272 HALNKSEVLARILQAKGR-GLTIVFTRTKRTAARLAEELTERGFAAGALHGDLGQGAREQ 330
Query: 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV 460
L FR+GK LVAT+VAARG+D++DV +I + P D + YIHR GRTGRAG +G AV
Sbjct: 331 ALRAFRNGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKTYIHRIGRTGRAGQSGTAV 390
Query: 461 MLYD----PRKSSVSK 472
D PR + + K
Sbjct: 391 TFVDWDDLPRWTLIDK 406
>gi|25027815|ref|NP_737869.1| cold shock DEAD-box protein A [Corynebacterium efficiens YS-314]
gi|259506205|ref|ZP_05749107.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
gi|23493098|dbj|BAC18069.1| putative cold shock DEAD-box protein A [Corynebacterium efficiens
YS-314]
gi|259166182|gb|EEW50736.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
Length = 736
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 148/391 (37%), Positives = 225/391 (57%), Gaps = 22/391 (5%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ ++ G E+ PIQA T +++DG D+VG A+TG GKT AF LP+L S+
Sbjct: 118 DAVRKVGFETPSPIQAQTIPVLMDGHDVVGLAQTGTGKTAAFALPVL----------SRI 167
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDV 240
R+P LVL PTRELA QV + F + +G L +YGG Y Q L++G +
Sbjct: 168 DKSVRSPQALVLAPTRELALQVADSFQSFADHLGGLNVLPIYGGQAYGIQLSGLRRGAHI 227
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGRI DH+E+G++D+S L+F VLDEADEML MGF EDVE IL D +V LF
Sbjct: 228 VVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILADTPDDKQVA--LF 285
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P+ ++ +S ++L + ++ + + + +TN+ L + + + I+
Sbjct: 286 SATMPNGIRRLSKQYLNNPQE---ISVKSETRTATNITQRFLSVAHRNKMDALTRILEVT 342
Query: 361 SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
I+F TK ++A+ L A A++GDI Q+QRE T+ + G+ LVAT
Sbjct: 343 EFEA-MIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVAT 401
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIER 475
+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG TG A++ PR + + IER
Sbjct: 402 DVAARGLDVERISHVLNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIER 461
Query: 476 ESGVKFEHISAPQPADIAKAAGVEAAETITQ 506
+ + P ++ + V+ A++IT+
Sbjct: 462 ATNAPLVEMELPTVDEVNEYRKVKFADSITE 492
>gi|375099094|ref|ZP_09745357.1| DNA/RNA helicase, superfamily II [Saccharomonospora cyanea NA-134]
gi|374659826|gb|EHR59704.1| DNA/RNA helicase, superfamily II [Saccharomonospora cyanea NA-134]
Length = 552
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 152/356 (42%), Positives = 206/356 (57%), Gaps = 21/356 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQA+T + L G D++G+ARTG GKTL F +P+L+ LT G
Sbjct: 38 LGDSGIERTFDIQALTLPLALRGEDVIGQARTGTGKTLGFGVPLLQRLT--------LPG 89
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
G P LV++PTREL QVHED G +G+ +YGG PY +Q L+ G+DVVIG
Sbjct: 90 DG-TPQALVVVPTRELCVQVHEDLTKAGKHLGVRVASIYGGRPYESQIKSLRDGVDVVIG 148
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D E+ ++ L + VLDEADEML +GF+ D+E +L V D + QT+LFSAT
Sbjct: 149 TPGRLLDLAEQRHLVLGKVSTLVLDEADEMLDLGFLPDIERVLRMVPD--ERQTMLFSAT 206
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P + ++ FL I NE S + +++ +++
Sbjct: 207 MPGPILTLARTFLHQPTH-IRAEDNEAGAVHERTTQYAYRSHSLDKPELVAKVLQAEDR- 264
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
G T+IFT TK +A ++AD L A A+HGD+ Q RE L FRSGK LVAT+VA
Sbjct: 265 GLTMIFTRTKRTAQKVADDLAERGFAAAAVHGDLGQGAREQALRAFRSGKVDVLVATDVA 324
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PRKSSVS 471
ARG+D++DV +I + P D + Y+HR GRTGRAG TGVA+ L D PR +S
Sbjct: 325 ARGIDVDDVTHVINYQTPEDEKTYVHRIGRTGRAGKTGVAITLVDWDEIPRWKLIS 380
>gi|429757621|ref|ZP_19290153.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 181 str. F0379]
gi|429174759|gb|EKY16228.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 181 str. F0379]
Length = 564
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 146/372 (39%), Positives = 219/372 (58%), Gaps = 21/372 (5%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F +S P+ + L+ +GI FPIQA+T + LD D++G+A+TG GKTL F +P+LE +
Sbjct: 67 FGVSDPIVDALEERGITHPFPIQALTLPVALDRHDIIGQAKTGTGKTLGFGIPVLEDVI- 125
Query: 174 GPTKASKKTGY-----GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYH 228
A + GY P L++LPTREL KQV +D + +YGG +
Sbjct: 126 ----APDEEGYEDLLNPNMPQALIILPTRELTKQVADDLRAAASKLSTRIVDIYGGVAFE 181
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q LK+G D+V+GTPGR+ D + +G + L+ ++ VLDEADEML +GF+ DVE +L +
Sbjct: 182 PQIEALKRGADIVVGTPGRLIDLLRQGVLHLNGVENVVLDEADEMLDLGFLPDVETLLSR 241
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348
+ A++ +LFSAT+P V ++ KF+ +++ + V+ ++ +
Sbjct: 242 IP-ADR-HMMLFSATMPGPVITLARKFMTQPTHIRAQDPDDQGQTVNTVQQVIYRTHAMN 299
Query: 349 RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAG 404
+++V+ I++ GR +IF TK +A+++AD L ALHGD+ Q RE L
Sbjct: 300 KTEVVARILQARGR-GRAVIFCRTKRAAARVADELTERGFAVAALHGDLGQGAREQALRA 358
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
FR+GK LVAT+VAARG+D++DV +I + P D + YIHR GRTGRAGN+G AV D
Sbjct: 359 FRNGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKVYIHRIGRTGRAGNSGTAVTFVD 418
Query: 465 ----PRKSSVSK 472
PR S +SK
Sbjct: 419 WDDVPRWSLISK 430
>gi|405979651|ref|ZP_11037994.1| hypothetical protein HMPREF9241_00717 [Actinomyces turicensis
ACS-279-V-Col4]
gi|404392067|gb|EJZ87128.1| hypothetical protein HMPREF9241_00717 [Actinomyces turicensis
ACS-279-V-Col4]
Length = 596
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 156/397 (39%), Positives = 230/397 (57%), Gaps = 24/397 (6%)
Query: 91 VEPEAGVEEQERGES--EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
VEPEA + + G+ EH + + F ++ P+ + L+ KGI FPIQA+T LD D
Sbjct: 54 VEPEATPDVVDTGDEDLEH-KSFADFGVTDPIVDALEDKGITHPFPIQALTLPPALDRHD 112
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG-----RAPSVLVLLPTRELAKQV 203
++G+A+TG GKTL F +P+LE + A + GY P L++LPTREL KQV
Sbjct: 113 IIGQAKTGTGKTLGFGIPVLEDVI-----APDEEGYDELLNPNMPQALIILPTRELTKQV 167
Query: 204 HEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLK 263
D + +YGG + Q LKKG D+V+GTPGR+ D + +G + L+ +
Sbjct: 168 ATDLREAAAYLSTRIVEIYGGVAFEPQIEALKKGADIVVGTPGRLIDLLRKGVLHLNGAE 227
Query: 264 FRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTI 323
VLDEADEML +GF+ DVE +L + AN+ T+LFSAT+P V ++ KF++
Sbjct: 228 TVVLDEADEMLDLGFLPDVETLLARTP-ANR-HTMLFSATMPGPVVALARKFMEQPTHIR 285
Query: 324 DLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLL 383
++ + +V+ ++ + + +V+ I++ G R+IIF TK +A++L + L
Sbjct: 286 AQDPEDQNQTVNSVKQVIYRVHAMDKVEVVARILQSEGRG-RSIIFCRTKRTAARLGEDL 344
Query: 384 P----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRD 439
+LHGD+ Q RE L FR+GK LVAT+VAARG+D++DV +I + P D
Sbjct: 345 TERGFAVGSLHGDLGQGAREQALRAFRNGKVDVLVATDVAARGIDVDDVTHVINYQCPED 404
Query: 440 VEAYIHRSGRTGRAGNTGVAVMLYD----PRKSSVSK 472
+ YIHR GRTGRAG++GVAV D PR S +SK
Sbjct: 405 EKIYIHRIGRTGRAGHSGVAVTFVDWDDTPRWSLISK 441
>gi|451340755|ref|ZP_21911241.1| putative ATP-dependent RNA helicase [Amycolatopsis azurea DSM
43854]
gi|449416398|gb|EMD22140.1| putative ATP-dependent RNA helicase [Amycolatopsis azurea DSM
43854]
Length = 529
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 157/367 (42%), Positives = 211/367 (57%), Gaps = 22/367 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
E E P S F + + + L GIE F IQA+T + + G DL+G+ARTG GKTL F
Sbjct: 2 EPESPTFAS-FGVKPEIVKALGEAGIERTFAIQALTLPLAMAGDDLIGQARTGMGKTLGF 60
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223
+P+L + + G G P VLV++PTREL QV D G +G+ + +YG
Sbjct: 61 GVPLLHRV--------EVPGDG-TPQVLVVVPTRELCIQVANDLKGAGKHLGIRTLAIYG 111
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283
G PY Q L+ G+DVVIGTPGR+ D E+ ++ L ++ VLDEADEML +GF+ D+E
Sbjct: 112 GRPYEPQIAALRNGVDVVIGTPGRLLDLAEQKHLVLGKVRGLVLDEADEMLDLGFLPDIE 171
Query: 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343
IL V D K QT+LFSAT+P + ++ FL + I N+ V
Sbjct: 172 RILRMVPD--KRQTMLFSATMPGPIITLARTFL-TQPTHIRAEENDAGAIHERTTQFVYR 228
Query: 344 CSSSARSQVIPDIIRCYSSGGR--TIIFTETKESASQLADLLP----GARALHGDIQQSQ 397
S + ++ I R + GR T+IFT TK +A ++AD L A A+HGD+ Q
Sbjct: 229 AHSMDKPEL---IARALQAEGRGLTMIFTRTKRTAQKVADELVERGFAAAAVHGDLGQGA 285
Query: 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG 457
RE L FRSGK LVAT+VAARG+DI+DV +I + P D + Y+HR GRTGRAG TG
Sbjct: 286 REQALRAFRSGKVDVLVATDVAARGIDIDDVTHVINYQTPEDEKTYVHRIGRTGRAGRTG 345
Query: 458 VAVMLYD 464
VA+ L D
Sbjct: 346 VAITLVD 352
>gi|227548399|ref|ZP_03978448.1| superfamily II helicase, partial [Corynebacterium lipophiloflavum
DSM 44291]
gi|227079443|gb|EEI17406.1| superfamily II helicase [Corynebacterium lipophiloflavum DSM 44291]
Length = 683
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 159/429 (37%), Positives = 237/429 (55%), Gaps = 32/429 (7%)
Query: 92 EPEAGVEEQ-------ERGESEHP-NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMV 143
EPEAG + Q + ++E P N + + + +K G E PIQA T ++
Sbjct: 79 EPEAGDKPQADDTPKADEPKAEEPKNGFEKLDLPDSVIAAVKMVGFEQPSPIQAETIPLL 138
Query: 144 LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203
++G D+VG A+TG GKT AF LP+L S+ R P LVL PTRELA QV
Sbjct: 139 MEGRDVVGLAQTGTGKTAAFALPVL----------SQIDPQLRHPQALVLAPTRELALQV 188
Query: 204 HEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSL 262
+ F + +G + +YGG Y Q L++G +++GTPGR+ DH+E+G++D+S+L
Sbjct: 189 ADSFQSFADHLGKIQVLPIYGGQAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISNL 248
Query: 263 KFRVLDEADEMLRMGFVEDVELILGKVEDA-NKVQTLLFSATLPSWVKHISTKFLKSDKK 321
+F VLDEADEML MGF EDVE IL ED N Q LFSAT+P+ ++ IS ++L
Sbjct: 249 RFLVLDEADEMLNMGFQEDVERIL---EDTPNTKQVALFSATMPNGIRKISKQYLND--- 302
Query: 322 TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLAD 381
++ + + +TN+ L + + I I+ I+F TK +LA+
Sbjct: 303 PAEVTVKSETRTNTNITQRYLFTAHRNKLDAITRILEVTEFEA-MIVFVRTKHETEELAE 361
Query: 382 LLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
L A A++GDI Q QRE T+ R G+ LVAT+VAARGLD+ + + + P
Sbjct: 362 KLRARGFSAAAINGDIAQQQRERTVDQLRDGRLDILVATDVAARGLDVERISHVFNYDIP 421
Query: 438 RDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAA 496
D+E+Y+HR GRTGRAG TG A++ PR + + IER + E + P ++ ++
Sbjct: 422 NDIESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERVTNATIEEMELPTVDEVNESR 481
Query: 497 GVEAAETIT 505
++ ++IT
Sbjct: 482 KLKFMDSIT 490
>gi|365827882|ref|ZP_09369720.1| hypothetical protein HMPREF0975_01503, partial [Actinomyces sp.
oral taxon 849 str. F0330]
gi|365264596|gb|EHM94396.1| hypothetical protein HMPREF0975_01503, partial [Actinomyces sp.
oral taxon 849 str. F0330]
Length = 540
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 152/369 (41%), Positives = 219/369 (59%), Gaps = 15/369 (4%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLT 172
F + + + L +KGI FPIQA+T + L+G D++G+A+TG GKTL F +P+L ++L
Sbjct: 73 FGVEPEICDALSAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLMDTLG 132
Query: 173 NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF 232
G + G +P LV+LPTRELAKQV E+ + +YGG Y Q
Sbjct: 133 PGEEGWDEDPASG-SPQALVILPTRELAKQVAEELSTAAARRTVRIVQVYGGRAYEPQIE 191
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G +VV+GTPGR+ D ++RG +DL+ + VLDEADEML +GF+ DVE IL +
Sbjct: 192 DLERGAEVVVGTPGRLIDLMDRGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILARTR-- 249
Query: 293 NKVQTLLFSATLPSWVKHISTKFL-KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
T+LFSAT+P V ++ +++ + G+E M T V+ +V S + +
Sbjct: 250 TDRHTMLFSATMPGAVVALARRYMTRPTHIRAQDPGDEGMTVQT-VQQVVYRTHSMNKVE 308
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407
V+ I++ GRTIIF TK +A+++AD L ALHGD+ Q RE L FR+
Sbjct: 309 VVSRILQAEGR-GRTIIFARTKRTAARVADDLRTRGFAPAALHGDLGQGAREQALRAFRN 367
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD--- 464
GK LVAT+VAARG+D++DV +I + P D + Y+HR GRTGRAGN+G AV D
Sbjct: 368 GKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFVDWDD 427
Query: 465 -PRKSSVSK 472
PR ++K
Sbjct: 428 VPRWRIIAK 436
>gi|332140113|ref|YP_004425851.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
ecotype']
gi|327550135|gb|AEA96853.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
ecotype']
Length = 589
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 159/381 (41%), Positives = 223/381 (58%), Gaps = 24/381 (6%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
P+ + L+ G E PIQA + ++L+G DL+G+A+TG GKT AF LP+L ++ P +
Sbjct: 17 PILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANID--PEQ- 73
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKG 237
R P +LVL PTRELA QV E F VY + + +YGG Y Q +LK+G
Sbjct: 74 -------RKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQLKRG 126
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
+ VV+GTPGRI DHI+R +DLS LK+ VLDEADEMLRMGF++DVELIL + QT
Sbjct: 127 VQVVVGTPGRIIDHIKRKTLDLSELKYLVLDEADEMLRMGFIDDVELILSHAPEER--QT 184
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P +K I+ ++LK D K + + K+ ++ +R + + + + I+
Sbjct: 185 ALFSATMPGPIKKITQRYLK-DPKHVKIAS--KVSTASTIRQRYCQIAPHHKLEALTRIM 241
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPGARA-----LHGDIQQSQREVTLAGFRSGKFMT 412
G IIF TK + +LAD L AR L+GDI Q+ RE T+ + GK
Sbjct: 242 EVEVFDG-MIIFVRTKTATVELADKL-SARGYDVEPLNGDIPQAARERTVEKLKQGKIDI 299
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVS 471
LVAT+V ARGLD+ V +I + P D E+Y+HR GRTGRAG G A++ R K +
Sbjct: 300 LVATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLLF 359
Query: 472 KIERESGVKFEHISAPQPADI 492
IE+ + E + P ++I
Sbjct: 360 SIEKTTKQPIEAMPIPSISEI 380
>gi|400293793|ref|ZP_10795634.1| DEAD/DEAH box helicase [Actinomyces naeslundii str. Howell 279]
gi|399901102|gb|EJN84016.1| DEAD/DEAH box helicase [Actinomyces naeslundii str. Howell 279]
Length = 560
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 153/369 (41%), Positives = 218/369 (59%), Gaps = 15/369 (4%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLT 172
F + + E L +KGI FPIQA+T + L+G D++G+A+TG GKTL F +P+L ++L
Sbjct: 72 FGVEPEICEALGAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLMDTLG 131
Query: 173 NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF 232
G + G +P LV+LPTRELAKQV E+ + +YGG Y Q
Sbjct: 132 PGEEGWDEDPASG-SPQGLVILPTRELAKQVAEELTTAAAKRTVRIVQVYGGRAYEPQIE 190
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L +G +VV+GTPGR+ D ++RG +DL+ + VLDEADEML +GF+ DVE IL +
Sbjct: 191 DLGRGAEVVVGTPGRLIDLMDRGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILARTR-- 248
Query: 293 NKVQTLLFSATLPSWVKHISTKFL-KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
T+LFSAT+P V ++ +++ + G+E M T V+ +V S + +
Sbjct: 249 TDRHTMLFSATMPGAVVALARRYMTRPTHIRAQDPGDEGMTVQT-VQQVVYRTHSMNKVE 307
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407
V+ I++ GRTIIF TK +A+++AD L ALHGD+ Q RE L FR+
Sbjct: 308 VVSRILQAEGR-GRTIIFARTKRTAARVADDLRSRGFATAALHGDLGQGAREQALRAFRN 366
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD--- 464
GK LVAT+VAARG+D++DV +I + P D + Y+HR GRTGRAGN+G AV D
Sbjct: 367 GKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFVDWDD 426
Query: 465 -PRKSSVSK 472
PR ++K
Sbjct: 427 VPRWRIIAK 435
>gi|333983621|ref|YP_004512831.1| DEAD/DEAH box helicase [Methylomonas methanica MC09]
gi|333807662|gb|AEG00332.1| DEAD/DEAH box helicase domain protein [Methylomonas methanica MC09]
Length = 580
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 153/392 (39%), Positives = 223/392 (56%), Gaps = 25/392 (6%)
Query: 105 SEHPNAVSRFR---ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTL 161
S+ P A F+ +S P+ + L++ G E+ PIQA V+ G D++G+A+TG GKT
Sbjct: 2 SDTPTATPSFKDLALSEPVLKALQTIGYETPSPIQAQIIPFVMAGRDVLGQAQTGTGKTA 61
Query: 162 AFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCC 220
AF +PIL T+ K + P LVL PTRELA QV E F Y + G
Sbjct: 62 AFAMPIL-------TRIDIKQ---KDPQALVLAPTRELAIQVAEAFQSYAAHIKGFHVLP 111
Query: 221 LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVE 280
+YGG Y Q +L +G VV+GTPGR+ DH+ RG + L LK VLDEADEMLRMGF++
Sbjct: 112 IYGGQDYSVQLRQLNRGAHVVVGTPGRVMDHMRRGTLKLDQLKTLVLDEADEMLRMGFID 171
Query: 281 DVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340
DVE IL + QT LFSAT+P+ ++ I+ K+L + ++ V K + N+R
Sbjct: 172 DVEWILEQTPSTR--QTALFSATMPTEIRKIAQKYLSNPEQVTIKV---KTTTAANIRQR 226
Query: 341 VLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQS 396
S + + I+ + G IIF TK + ++A+ L A A++GD+ Q+
Sbjct: 227 YWFVSGLHKMDALTRILEAENFDG-MIIFVRTKTATIEVAEKLEARGFSASAINGDMSQA 285
Query: 397 QREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNT 456
RE + ++GK L+AT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG T
Sbjct: 286 LRERAIENLKNGKLDILIATDVAARGLDVDRITHVVNYDIPYDTESYVHRIGRTGRAGRT 345
Query: 457 GVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487
G A++ PR K ++ IE+ + K E + P
Sbjct: 346 GDAILFVSPREKRLLANIEQATKQKVEEMQLP 377
>gi|325068259|ref|ZP_08126932.1| DEAD/DEAH box helicase domain protein [Actinomyces oris K20]
Length = 507
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 156/370 (42%), Positives = 223/370 (60%), Gaps = 17/370 (4%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLT 172
F + + E L +KGI FPIQA+T + L+G D++G+A+TG GKTL F +P+L ++L
Sbjct: 75 FGVEPEICEALDAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLMDTLG 134
Query: 173 NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF 232
G + G +P LV+LPTRELAKQV E+ + +YGG Y Q
Sbjct: 135 PGEEGWDEDPASG-SPQALVILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAYEPQIE 193
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G +VV+GTPGR+ D +ERG +DL+ + VLDEADEML +GF+ DVE IL + A
Sbjct: 194 DLERGAEVVVGTPGRLIDLMERGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILARTR-A 252
Query: 293 NKVQTLLFSATLPSWVKHISTKFL-KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
++ T+LFSAT+P V ++ +++ + G+E M T V+ +V S + +
Sbjct: 253 DR-HTMLFSATMPGAVVALARRYMTRPTHIRAQDPGDEGMTVQT-VQQVVYRTHSMNKVE 310
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGDIQQSQREVTLAGFR 406
V+ I++ GRTIIF TK +A+++AD L AR ALHGD+ Q RE L FR
Sbjct: 311 VVSRILQAEGR-GRTIIFARTKRTAARVADDLR-ARGFATGALHGDLGQGAREQALRAFR 368
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD-- 464
+ K LVAT+VAARG+D++DV +I + P D + Y+HR GRTGRAGN+G AV D
Sbjct: 369 NNKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFVDWD 428
Query: 465 --PRKSSVSK 472
PR ++K
Sbjct: 429 DVPRWRIIAK 438
>gi|296119482|ref|ZP_06838040.1| putative cold shock DEAD-box protein A [Corynebacterium
ammoniagenes DSM 20306]
gi|295967365|gb|EFG80632.1| putative cold shock DEAD-box protein A [Corynebacterium
ammoniagenes DSM 20306]
Length = 658
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 159/448 (35%), Positives = 247/448 (55%), Gaps = 24/448 (5%)
Query: 99 EQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQG 158
E + +++P + +++ + G + PIQA T ++++G D+VG A+TG G
Sbjct: 50 EDKNSANDNPQGFGNLGLPDKVQDAVAKVGYTTPSPIQAQTIPILMEGRDVVGLAQTGTG 109
Query: 159 KTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LT 217
KT AF LP+L S+ R P LVL PTRELA QV + F + +G +
Sbjct: 110 KTAAFALPVL----------SQIDVNARHPQALVLAPTRELALQVADSFQSFADHLGRIE 159
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
+YGG Y Q L++G +++GTPGR+ DH+E+G++D+S L+F VLDEADEML MG
Sbjct: 160 VLPIYGGQAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMG 219
Query: 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337
F EDVE IL + +V LFSAT+P+ ++ +S K+L S + V +E+ + + N+
Sbjct: 220 FQEDVERILADTPEEKQVA--LFSATMPNSIRRLSKKYLNSPAEVT--VKSEQ-RTNDNI 274
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFT----ETKESASQLADLLPGARALHGDI 393
+ L + A+ I+ I+F ET+E A +L D A A++GDI
Sbjct: 275 KQRFLLTAHRAKLDAFTRILEVTDYDA-MIVFCRTKHETEEVAEKLRDAGYNAAAINGDI 333
Query: 394 QQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA 453
Q+QRE T+ + G+ LVAT+VAARGLD++ + ++ + P D E+Y+HR GRTGRA
Sbjct: 334 AQNQRERTVDQLKDGRLDILVATDVAARGLDVDRITHVVNFDIPNDTESYVHRIGRTGRA 393
Query: 454 GNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQV-SDSV 511
G TG A++ PR + + IER + + E + P ++ A IT+V D
Sbjct: 394 GRTGEAILFVTPRERRMLRSIERVTNARLEEMELPTVDEVNAKRKENFASQITEVLGDGQ 453
Query: 512 IPAFKSAAEELLNNSGLSAAELLAKALA 539
+ F+ + N+ + A + +A ALA
Sbjct: 454 MELFRGLVRKYSENNNV-AMDDIAAALA 480
>gi|213964614|ref|ZP_03392814.1| cold-shock deAd box protein a [Corynebacterium amycolatum SK46]
gi|213952807|gb|EEB64189.1| cold-shock deAd box protein a [Corynebacterium amycolatum SK46]
Length = 702
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 149/405 (36%), Positives = 231/405 (57%), Gaps = 23/405 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
++ G E+ PIQA T ++ G D+VG A+TG GKT AF LPIL +
Sbjct: 76 VRKVGFETPSPIQAATIPTLMSGRDVVGLAQTGTGKTAAFALPILARIDRSV-------- 127
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVI 242
RAP LVL PTRELA QV + F + +G + +YGG Y Q L++G +++
Sbjct: 128 --RAPQALVLAPTRELALQVADSFQSFADHLGKIQVLPIYGGQSYGVQLSGLRRGAQIIV 185
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+E+G++D+S L+F VLDEADEML+MGF EDVE IL D +V LFSA
Sbjct: 186 GTPGRVIDHLEKGSLDISDLRFLVLDEADEMLQMGFQEDVERILADTPDDKQVA--LFSA 243
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ +S ++L ++ + + + + N+R L S + + I+
Sbjct: 244 TMPASIRRLSKQYLTEPEE---ITVKSQTRTADNIRQRFLMVSHRNKLDALTRILEVEEF 300
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
I+F TK +LA+ L A A++GDI Q+ RE T+ + G+ LVAT+V
Sbjct: 301 EA-MIMFVRTKHETEELAEKLRARGFSAAAINGDIPQTLRERTIDQLKDGRLDILVATDV 359
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERES 477
AARGLD++ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + + IER +
Sbjct: 360 AARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGEALLFVTPREGRLLRSIERAT 419
Query: 478 GVKFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKSAAEE 521
+ + P ++ + + A+ +T+ ++DS +P F+ EE
Sbjct: 420 KSQLHEMKLPTVDEVNDSRKQKFADDLTEALADSQVPVFRELIEE 464
>gi|269125451|ref|YP_003298821.1| DEAD/DEAH box helicase domain-containing protein [Thermomonospora
curvata DSM 43183]
gi|268310409|gb|ACY96783.1| DEAD/DEAH box helicase domain protein [Thermomonospora curvata DSM
43183]
Length = 565
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 157/379 (41%), Positives = 219/379 (57%), Gaps = 27/379 (7%)
Query: 99 EQERGE-SEHP-----NAVSRFR---ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDL 149
E +RG SE P A++ FR + + + L+S+GI FPIQ M + L G D+
Sbjct: 7 EPKRGPGSEDPAQRRLKALTTFRELGVCSEIADALESEGIVDAFPIQEMALPIGLRGYDI 66
Query: 150 VGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209
+G+ARTG GKTLAF +P+L+ + +G G+AP LVL PTRELA QV +D V
Sbjct: 67 IGQARTGTGKTLAFGIPLLQRIEHG----------GKAPRGLVLAPTRELASQVTDDLLV 116
Query: 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269
GG +G +YGG Y Q L+ G+DVV+GTPGR+ D +G++DLS ++ VLDE
Sbjct: 117 AGGKLGTRVVAVYGGRAYEPQIQALRDGVDVVVGTPGRLLDLARQGHLDLSQIQMLVLDE 176
Query: 270 ADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNE 329
AD ML +GF+ D+E I+ V + QT+LFSAT+P + +S ++L V E
Sbjct: 177 ADRMLDLGFLPDIERIIELV--PAERQTMLFSATMPGEIVALSRRYLNRPTNVRAEVHTE 234
Query: 330 KMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----G 385
+A+ V V + +V+ +++ G T++F +TK + ++A L
Sbjct: 235 S-EATPQVTQHVFQTHPMDKPEVLARLLQANGR-GLTMVFCQTKRACDRIAADLTRRGFA 292
Query: 386 ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIH 445
A A+HGD+ Q QRE L FRSGK LVAT+VAARGLD+ DV +I E P E ++H
Sbjct: 293 AAAVHGDLGQGQRERALRAFRSGKVDVLVATDVAARGLDVEDVTHVINYECPDSAETHVH 352
Query: 446 RSGRTGRAGNTGVAVMLYD 464
R GRTGRAG G AV L D
Sbjct: 353 RIGRTGRAGREGTAVTLVD 371
>gi|297626176|ref|YP_003687939.1| DEAD/DEAH box helicase [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
gi|296921941|emb|CBL56501.1| DEAD/DEAH box helicase domain protein [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
Length = 501
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 146/355 (41%), Positives = 209/355 (58%), Gaps = 10/355 (2%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L ++GI FPIQ M + L G+D++G+ARTG GKTLAF +PIL+ + + +
Sbjct: 31 LDAEGITHPFPIQEMAIPIALTGTDMIGQARTGTGKTLAFGIPILQKVVLKTDEGFDQLD 90
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
P LV+ PTRELA+QV D + G +YGG Y Q LKKG+DVV+G
Sbjct: 91 PKDKPQALVMSPTRELAQQVGSDLAIAGRDRHARVLTIYGGVGYDDQLDALKKGVDVVVG 150
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D + RGN+DLS ++ VLDEADEML +GF+ DV+ +L + + QT++FSAT
Sbjct: 151 TPGRLLDLVHRGNLDLSHVRIAVLDEADEMLDLGFLPDVQALLDRTPASR--QTMMFSAT 208
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P+ + ++ L I G + + + ++I +++ S G
Sbjct: 209 MPAVIMSLARSRLNQ-PVNIRAEGRDAQATVPQTTQFIYQAHELDKPEMIGKMLQ--SEG 265
Query: 364 GR-TIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
R ++FT TK +A +LAD L A +LHGD+ QSQRE T+ FR+ K LVAT+V
Sbjct: 266 MRKMMVFTRTKRAAQRLADDLRDRGFEAASLHGDLNQSQREKTMKRFRNDKIQVLVATDV 325
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSKI 473
AARG+D++DV ++ E P D E Y+HR GRTGRAG+ GVAV L D + + K+
Sbjct: 326 AARGIDVDDVTHVVNYEVPDDPEQYVHRIGRTGRAGHEGVAVTLVDWQDVTRWKV 380
>gi|399524825|ref|ZP_10765330.1| DEAD/DEAH box helicase [Atopobium sp. ICM58]
gi|398373862|gb|EJN51687.1| DEAD/DEAH box helicase [Atopobium sp. ICM58]
Length = 609
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 149/383 (38%), Positives = 222/383 (57%), Gaps = 21/383 (5%)
Query: 103 GESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLA 162
GE+ + + F ++ P+ + L KGI FPIQA+T LD D++G+A+TG GKTL
Sbjct: 65 GENLDKKSFADFGVTDPIVDALDDKGITHPFPIQALTLGPALDRHDIIGQAKTGTGKTLG 124
Query: 163 FVLPILESLTNGPTKASKKTGY-----GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLT 217
F +P+LE + A + GY P L++LPTREL KQV +D +
Sbjct: 125 FGIPVLEDVI-----APDEEGYEDLLNPNQPQALIILPTRELTKQVAQDLRDAAKYLSTR 179
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
+YGG + Q L +G D+V+GTPGR+ D + +G++ LS ++ VLDEADEML +G
Sbjct: 180 IVEIYGGVAFEPQIEALTRGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLG 239
Query: 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337
F+ DVE +L +V + N+ T+LFSAT+P V ++ +F+ +++ + V
Sbjct: 240 FLPDVETLLARVPE-NR-HTMLFSATMPGPVVALARRFMVHPTHIRAQDPDDQNQTVNTV 297
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDI 393
+ ++ + + +V+ I++ G RT+IF TK +A++L + L ALHGD+
Sbjct: 298 KQVIYRVHAMNKVEVVARILQAEGRG-RTVIFCRTKRTAARLGEDLTDRGFAVGALHGDL 356
Query: 394 QQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA 453
Q RE L FR+GK LVAT+VAARG+D++DV +I + P D + YIHR GRTGRA
Sbjct: 357 GQGAREQALRAFRNGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRA 416
Query: 454 GNTGVAVMLYD----PRKSSVSK 472
GN+G AV D PR S +SK
Sbjct: 417 GNSGTAVTFVDWDDTPRWSLISK 439
>gi|320533118|ref|ZP_08033850.1| DEAD/DEAH box helicase, partial [Actinomyces sp. oral taxon 171
str. F0337]
gi|320134690|gb|EFW26906.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
Length = 471
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 152/369 (41%), Positives = 218/369 (59%), Gaps = 15/369 (4%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLT 172
F + + E L +KGI FPIQA+T + L+G D++G+A+TG GKTL F +P+L ++L
Sbjct: 75 FDVEPEICEALSAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLMDTLG 134
Query: 173 NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF 232
G + G +P L++LPTRELAKQV E+ + +YGG Y Q
Sbjct: 135 PGEEGWDEDPASG-SPQALIILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAYEPQIE 193
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G +VV+GTPGR+ D +ERG +DL+ + VLDEADEML +GF+ DVE IL +
Sbjct: 194 DLERGAEVVVGTPGRLIDLMERGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILARTR-- 251
Query: 293 NKVQTLLFSATLPSWVKHISTKFL-KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
T+LFSAT+P V ++ +++ + G+E M T V+ +V S + +
Sbjct: 252 TDRHTMLFSATMPGAVVALARRYMTRPTHIRAQDPGDEGMTVQT-VQQVVYRTHSMNKVE 310
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407
V+ I++ GRTIIF TK +A+++AD L ALHGD+ Q RE L FR+
Sbjct: 311 VVSRILQAEGR-GRTIIFARTKRTAARVADDLRARGFATAALHGDLGQGAREQALRAFRN 369
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD--- 464
K LVAT+VAARG+D++DV +I + P D + Y+HR GRTGRAGN+G AV D
Sbjct: 370 SKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFVDWDD 429
Query: 465 -PRKSSVSK 472
PR ++K
Sbjct: 430 VPRWRIIAK 438
>gi|433457741|ref|ZP_20415720.1| DNA/RNA helicase [Arthrobacter crystallopoietes BAB-32]
gi|432194443|gb|ELK51067.1| DNA/RNA helicase [Arthrobacter crystallopoietes BAB-32]
Length = 635
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 171/428 (39%), Positives = 238/428 (55%), Gaps = 32/428 (7%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN-GPTKASKKT 182
L G E PIQA T +L+G D+VG A+TG GKT AF +P L + PTK ++
Sbjct: 39 LTDVGYEKPSPIQAATIPALLEGRDVVGLAQTGTGKTAAFAIPALSRMAELPPTKNTQ-- 96
Query: 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVV 241
+LVL PTRELA QV E F Y + T +YGG+ Y Q L++G VV
Sbjct: 97 -------ILVLAPTRELALQVAEAFSSYAAHMEDFTVLPVYGGSAYGPQLAGLRRGAQVV 149
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
+GTPGR+ DHIE+G++DLS L++ VLDEADEMLRMGF E+V+ IL + +V LFS
Sbjct: 150 VGTPGRVIDHIEKGSLDLSELQYVVLDEADEMLRMGFAEEVDRILDATPEEKQVA--LFS 207
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
AT+P+ ++ I+ K+LK D I + K TN+R + + + + I+
Sbjct: 208 ATMPTAIRRIAKKYLK-DPAEISV--KSKTSTGTNIRQRYVQVMGAHKLDAMTRILETEE 264
Query: 362 SGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
G I F TK + LAD L A A++GDI Q QRE T+ R GK LVAT+
Sbjct: 265 FDG-VIAFVRTKMATEDLADKLKARGFTAAAINGDIPQQQRERTVEALREGKIDILVATD 323
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS----SVSKI 473
VAARGLD+ + ++ + P D E+Y+HR GRTGRAG TG A++ PR+ ++ K
Sbjct: 324 VAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRTGDAILFMTPREKYLLRAIEKA 383
Query: 474 ERESGVKFEHISAPQPADIAKAAGVEA-AETITQVSDSV-IPAFKSAAEELLNNSGLSAA 531
R+S V+ H+ D A +E A IT+ +S + F+ E+ N ++A
Sbjct: 384 TRQS-VELMHLPT---VDTVNANRLEKFAGRITETLESEDLAVFRELVEKYEANHDVTAV 439
Query: 532 ELLAKALA 539
E +A ALA
Sbjct: 440 E-IAAALA 446
>gi|148272405|ref|YP_001221966.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147830335|emb|CAN01269.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 586
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 220/375 (58%), Gaps = 22/375 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
LK G E+ IQA T +L G D++G A+TG GKT AF LPIL +L S+KT
Sbjct: 33 LKDVGYETPSAIQAATIPSLLSGRDVLGVAQTGTGKTAAFALPILSNL-----DVSQKT- 86
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P LVL PTRELA QV E F+ Y G G+ +YGG Y Q L++G+ VV+
Sbjct: 87 ----PQALVLAPTRELALQVCEAFERYASGMRGVHVLPVYGGQGYGVQLSALRRGVHVVV 142
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGRI DH+++G +DLS LKF VLDEADEML+MGF EDVE IL + ++ LFSA
Sbjct: 143 GTPGRIMDHLDKGTLDLSQLKFLVLDEADEMLKMGFAEDVETILADTPKSKQIA--LFSA 200
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ IS K+L+ D + I + A+T R++++ S + + I+ +
Sbjct: 201 TMPAQIRRISGKYLQ-DPEEITVKNKTTTSANTTQRYLMV--SYPQKVDALTRILETENF 257
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G I+F TK LA+ L A A+ GD+ Q+QRE T+ ++GK LVAT+V
Sbjct: 258 EG-MIVFVRTKNETETLAEKLRARGYAAAAISGDVAQAQRERTVEQLKNGKLDILVATDV 316
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERES 477
AARGLD++ + ++ + P D E+Y+HR GRTGRAG +G A+ PR + ++ IE+ +
Sbjct: 317 AARGLDVDRISHVVNYDIPIDTESYVHRIGRTGRAGRSGAAISFVTPRERRLLTAIEKAT 376
Query: 478 GVKFEHISAPQPADI 492
+ P D+
Sbjct: 377 RQPLTEMRMPSAEDV 391
>gi|325676644|ref|ZP_08156320.1| ATP-dependent RNA helicase DeaD, partial [Rhodococcus equi ATCC
33707]
gi|325552534|gb|EGD22220.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
Length = 453
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 157/425 (36%), Positives = 235/425 (55%), Gaps = 29/425 (6%)
Query: 99 EQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQG 158
E++ ++P + +I + + L G ES PIQA T +L+G D+VG A+TG G
Sbjct: 5 ERDPQTDDNPITFADLQIDERVLKALSDVGYESPSPIQAATIPTLLEGKDVVGLAQTGTG 64
Query: 159 KTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLT 217
KT AF +PIL L +K P L+L PTRELA QV E F Y + GL
Sbjct: 65 KTAAFAIPILSRL-----DVDRKV-----PQALILAPTRELALQVAEAFGKYSAHIPGLQ 114
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
+YGG Y Q L++G +++GTPGR+ DH+E+G +DLS+L++ VLDEADEML+MG
Sbjct: 115 VLPIYGGQAYGVQLSGLRRGAQIIVGTPGRVIDHLEKGTLDLSNLEYLVLDEADEMLKMG 174
Query: 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337
F +DVE IL + +V LFSAT+P ++ IS ++L +++ K ++N+
Sbjct: 175 FQDDVERILADTPEYKQVA--LFSATMPPAIRKISKQYLHD---PVEITVKAKTATASNI 229
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDI 393
+ + + + I+ S IIF TK++ LA+ L A A++GDI
Sbjct: 230 TQRWVQVAHQRKLDALTRILEVESFEA-MIIFVRTKQATEDLAERLRARGFSAAAINGDI 288
Query: 394 QQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA 453
Q+QRE T+ +SG LVAT+VAARGLD++ + ++ + P D E+Y+HR GRTGRA
Sbjct: 289 VQAQRERTIGQLKSGALDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRA 348
Query: 454 GNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVI 512
G TG A++ PR+ + K IER + I P D+ A+ +++ DS+
Sbjct: 349 GRTGDALLFVAPRERHLLKSIERTTRQPLTEIQLPTVEDV-------NAQRVSKFGDSIT 401
Query: 513 PAFKS 517
+ S
Sbjct: 402 ESLNS 406
>gi|283457687|ref|YP_003362273.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
gi|283133688|dbj|BAI64453.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
Length = 574
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 143/355 (40%), Positives = 206/355 (58%), Gaps = 7/355 (1%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F + + + L + GI S FPIQ +T + L G D++G+A+TG GKTL F LP ++ +
Sbjct: 19 FGVRQDISDALAAVGITSPFPIQELTLPVALSGQDIIGQAKTGTGKTLGFGLPTIQRVVG 78
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
+ Y AP L+L+PTRELA QV ED + LYGG P Q
Sbjct: 79 RDDEGWADLEYPGAPQALILVPTRELAIQVGEDLAIAAKLRNARVATLYGGVPIEPQAEL 138
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L++G++VV+GTPGRI D ++G ++L +K VLDEADEML +GF VE IL + +
Sbjct: 139 LRRGLEVVVGTPGRIIDLYQQGFLNLKQVKIVVLDEADEMLDLGFQPSVEKILSYLPEDR 198
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
Q++LFSAT+P V ++ +++ + + K ++R +V + ++I
Sbjct: 199 --QSMLFSATMPGPVIAMARQYMTKPMRISAADPEDASKTKASIRQVVYRAHHLDKDEMI 256
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409
I+R + GRT+IFT+TK A+++A+ L A LHGD+ Q RE L FR+GK
Sbjct: 257 GRILRA-TGRGRTVIFTKTKRDAARVAEELVNRGFAAAPLHGDLNQVAREQALKAFRTGK 315
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
LVAT+VAARG+D+ DV +I P D + Y+HR+GRTGRAGN G AV L D
Sbjct: 316 VDILVATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGNEGTAVTLVD 370
>gi|399527936|ref|ZP_10767613.1| DEAD/DEAH box helicase [Actinomyces sp. ICM39]
gi|398361526|gb|EJN45278.1| DEAD/DEAH box helicase [Actinomyces sp. ICM39]
Length = 588
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 150/385 (38%), Positives = 226/385 (58%), Gaps = 23/385 (5%)
Query: 102 RGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTL 161
+GE + + F ++ P+ + L+ KGI FPIQA+T LD D++G+A+TG GKTL
Sbjct: 56 KGEDLDKKSFADFGVTDPIVDALEDKGITHPFPIQALTLGPALDRHDIIGQAKTGTGKTL 115
Query: 162 AFVLPILESLTNGPTKASKKTGY-----GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGL 216
F +P+LE + A + GY P L++LPTREL KQV +D +
Sbjct: 116 GFGIPVLEDVI-----APDEEGYEDLLNPNKPQALIILPTRELTKQVAQDLREAAKYLST 170
Query: 217 TSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM 276
+YGG + Q L++G D+V+GTPGR+ D + +G++ LS ++ VLDEADEML +
Sbjct: 171 RIVEIYGGVAFEPQIEALERGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDL 230
Query: 277 GFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN 336
GF+ DVE +L +V + N+ T+LFSAT+P V ++ +F+ +++ +
Sbjct: 231 GFLPDVETLLSRVPE-NR-HTMLFSATMPGPVVALARRFMVQPTHIRAQDPDDQNQTVNT 288
Query: 337 VRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHG 391
V+ ++ + + +V+ I++ G RT+IF TK +A++L + L AR +LHG
Sbjct: 289 VKQVIYRVHAMNKVEVVARILQAEGRG-RTVIFCRTKRTAARLGEDLT-ARGFAVGSLHG 346
Query: 392 DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451
D+ Q RE L FR+GK LVAT+VAARG+D++DV +I + P D + YIHR GRTG
Sbjct: 347 DLGQGAREQALRAFRNGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTG 406
Query: 452 RAGNTGVAVMLYD----PRKSSVSK 472
RAGN+G AV D PR S +SK
Sbjct: 407 RAGNSGTAVTFVDWDDTPRWSLISK 431
>gi|429730318|ref|ZP_19264966.1| DEAD-box ATP-dependent RNA helicase CshA family protein
[Corynebacterium durum F0235]
gi|429147909|gb|EKX90927.1| DEAD-box ATP-dependent RNA helicase CshA family protein
[Corynebacterium durum F0235]
Length = 446
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 150/361 (41%), Positives = 213/361 (59%), Gaps = 18/361 (4%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
++ +++ + + L S GI+ F IQ +T + LDG DL+G+ARTGQGKTL F +P+L+ +
Sbjct: 11 AQLGVAIEITDALDSFGIQHTFAIQELTLPLALDGIDLIGQARTGQGKTLGFGVPLLDRI 70
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
+ A P LV+ PTRELA QV +D + + +YGG PY Q
Sbjct: 71 FDSADIAELDG----TPRALVVTPTRELAIQVADDLHRAAKNLPVRILTIYGGRPYEEQI 126
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
L KGIDVV+GTPGR+ D +RG++ L + VLDEADEML +GF+ +E +L +
Sbjct: 127 NALDKGIDVVVGTPGRLLDLYQRGSLTLDQVAILVLDEADEMLNLGFLPAIEKLLKAL-- 184
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVLPCSSSAR 349
+K QT+LFSAT+P + ++ F+ K + + E A TN +R +V +
Sbjct: 185 THKHQTMLFSATMPGPIVTLARTFM---HKPVHIRAEEPDAAQTNQDIRQVVFQAHRMDK 241
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQREVTLAGF 405
V+ I++ G+TIIF TK SA++LA+ L + A+HGD+ Q RE +L F
Sbjct: 242 VAVVSRILQAQGR-GKTIIFARTKRSAAELANDLAASGFLVGAVHGDMGQPAREKSLTAF 300
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML--Y 463
RSG LVAT+VAARG+DI+DV +I + P D Y+HR GRTGRAG+TG AV L Y
Sbjct: 301 RSGDIEILVATDVAARGIDIDDVTHVINYQTPDDEMTYVHRIGRTGRAGHTGTAVTLVGY 360
Query: 464 D 464
D
Sbjct: 361 D 361
>gi|170782231|ref|YP_001710564.1| cold-shock DEAD-box RNA helicase [Clavibacter michiganensis subsp.
sepedonicus]
gi|169156800|emb|CAQ01964.1| cold-shock DEAD-box RNA helicase [Clavibacter michiganensis subsp.
sepedonicus]
Length = 585
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 154/375 (41%), Positives = 220/375 (58%), Gaps = 22/375 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
LK G E+ IQA T +L G D++G A+TG GKT AF LPIL +L ++KT
Sbjct: 32 LKDVGYETPSAIQAATIPSLLSGRDVLGVAQTGTGKTAAFALPILSNL-----DVAQKT- 85
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P LVL PTRELA QV E F+ Y G G+ +YGG Y Q L++G+ VV+
Sbjct: 86 ----PQALVLAPTRELALQVCEAFERYASGMRGVHVLPVYGGQGYGVQLSALRRGVHVVV 141
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGRI DH+++G +DLS LKF VLDEADEML+MGF EDVE IL + ++ LFSA
Sbjct: 142 GTPGRIMDHLDKGTLDLSQLKFLVLDEADEMLKMGFAEDVETILADTPKSKQIA--LFSA 199
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ IS K+L+ D + I + A+T R++++ S + + I+ +
Sbjct: 200 TMPAQIRRISGKYLQ-DPEEITVKNKTTTSANTTQRYLMV--SYPQKVDALTRILETENF 256
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G I+F TK LA+ L A A+ GD+ Q+QRE T+ ++GK LVAT+V
Sbjct: 257 EG-MIVFVRTKNETETLAEKLRARGYAAAAISGDVAQAQRERTVEQLKNGKLDILVATDV 315
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERES 477
AARGLD++ + ++ + P D E+Y+HR GRTGRAG +G A+ PR + ++ IE+ +
Sbjct: 316 AARGLDVDRISHVVNYDIPIDTESYVHRIGRTGRAGRSGAAISFVTPRERRLLTAIEKAT 375
Query: 478 GVKFEHISAPQPADI 492
+ P D+
Sbjct: 376 RQPLTEMRMPSAEDV 390
>gi|88856286|ref|ZP_01130945.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
gi|88814370|gb|EAR24233.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
Length = 638
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 153/371 (41%), Positives = 216/371 (58%), Gaps = 22/371 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ IQA T +L+G D+VG A+TG GKT AF LPIL L +K
Sbjct: 36 GYETPSAIQAATIPTLLEGRDVVGLAQTGTGKTAAFALPILSRLDVSQSK---------- 85
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV E F+ Y + G+ +YGG Y Q L++G+ VV+GTPG
Sbjct: 86 PQALVLSPTRELALQVCEAFEKYATHMRGVHVLPVYGGQAYGVQLSALRRGVHVVVGTPG 145
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
RI DH+ +G +DLS LK+ VLDEADEML+MGF EDVE IL + +V LFSAT+P+
Sbjct: 146 RIMDHLAKGTLDLSELKYLVLDEADEMLKMGFAEDVETILADTPEDKQVA--LFSATMPA 203
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ IS K+L+ D + I + A+T+ R++V+ S + + I+ + G
Sbjct: 204 QIRRISKKYLR-DAEEITVKSQTTTSANTSQRYLVV--SYPQKVDALTRILEVENFEG-M 259
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK LA+ L A A+ GD+ Q+QRE T+ +SGK LVAT+VAARG
Sbjct: 260 IVFVRTKSETENLAEKLRARGYSAAAISGDVAQAQRERTVNQLKSGKLDILVATDVAARG 319
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKF 481
LD++ + ++ + P D E+Y+HR GRTGRAG +G A+ PR + ++ IE+ +
Sbjct: 320 LDVDRISHVVNFDIPVDTESYVHRIGRTGRAGRSGSAISFVTPRERRLLTAIEKATRQPL 379
Query: 482 EHISAPQPADI 492
+ P D+
Sbjct: 380 TQMQLPSVEDV 390
>gi|172040364|ref|YP_001800078.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
gi|448823346|ref|YP_007416511.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7111]
gi|171851668|emb|CAQ04644.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
gi|448276843|gb|AGE36267.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7111]
Length = 778
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 148/372 (39%), Positives = 213/372 (57%), Gaps = 22/372 (5%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ +++ G PIQ T +++ G D+VG A+TG GKT AF LPIL S+
Sbjct: 144 DAVRAVGFTKPSPIQEQTIPLLMAGEDVVGLAQTGTGKTAAFALPIL----------SRL 193
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC-LYGGAPYHAQEFKLKKGIDV 240
R P LVL PTRELA QV E F+ + +G + +YGG PY AQ L++G V
Sbjct: 194 NLKSRKPQALVLAPTRELALQVAESFEDFAEKMGGVNILPIYGGQPYGAQLSGLRRGAHV 253
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGR+ DH+++G++D+S L+F VLDEADEML MGF EDVE IL + +V LF
Sbjct: 254 VVGTPGRVIDHLQKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPEDKQV--ALF 311
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+PS ++H+S ++L S ++ + + + N+ L + + I+
Sbjct: 312 SATMPSAIRHLSKRYLNSPQE---VTVKSTQRTAENIEQDYLIVHHREKLDALTRILEVT 368
Query: 361 SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
I+F TK +LA+ L A A++GDI Q+QRE T+ + G+ LVAT
Sbjct: 369 DFDA-MIMFVRTKNDTEELAERLRARGYEAAAINGDIAQAQRERTVDQLKDGRLDILVAT 427
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IER 475
+VAARGLD+ + + + PRD E+Y+HR GRTGRAG +G AV+ PR+ + K IER
Sbjct: 428 DVAARGLDVERITHVFNYDIPRDTESYVHRIGRTGRAGRSGRAVLFVTPRERRMLKSIER 487
Query: 476 ESGVKFEHISAP 487
+ + I P
Sbjct: 488 ATKSRLNEIELP 499
>gi|385653332|ref|ZP_10047885.1| superfamily II DNA and RNA helicase, partial [Leucobacter
chromiiresistens JG 31]
Length = 608
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 150/367 (40%), Positives = 217/367 (59%), Gaps = 22/367 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ IQA T +L+G+D+VG A+TG GKT AF LPIL +T G
Sbjct: 37 GYETPSAIQAATIPTLLEGADVVGLAQTGTGKTAAFALPILSRITPGQG----------V 86
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC-LYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV E F+ Y + +YGG Y Q L++G+D+V+GTPG
Sbjct: 87 PQALVLAPTRELALQVCEAFESYAAHLPEVHLLPVYGGQAYGQQLSALRRGVDIVVGTPG 146
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
RI DH++RG++DL+ +K+ VLDEADEML+MGF EDVE IL + + Q LFSAT+P+
Sbjct: 147 RIMDHLKRGSLDLTQIKYLVLDEADEMLKMGFAEDVETILA--DTPQEKQVALFSATMPA 204
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ IS ++L +D + I + G + ++ R+ V+ S + + + I+
Sbjct: 205 QIRRISQQYL-NDPREIKIAGKTQTSSTITQRYNVV--SYTQKLDALTRILEVEDFDA-M 260
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+FT T+ + Q+A+ L A A++GDI Q+QRE T+ + GK LVAT+VAARG
Sbjct: 261 IVFTRTRGDSEQVAEKLRARGYSAAAINGDIPQAQRERTVQSLKDGKLDILVATDVAARG 320
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKF 481
LD+ + ++ + P D E+Y+HR GRTGRAG TG A+ PR+ + K IE+ +
Sbjct: 321 LDVERISHVLNYDLPIDTESYVHRIGRTGRAGRTGDAISFVTPREQRLLKAIEKATKQPL 380
Query: 482 EHISAPQ 488
+ PQ
Sbjct: 381 TQMPLPQ 387
>gi|311743209|ref|ZP_07717016.1| DeaD protein, partial [Aeromicrobium marinum DSM 15272]
gi|311313277|gb|EFQ83187.1| DeaD protein [Aeromicrobium marinum DSM 15272]
Length = 567
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 153/370 (41%), Positives = 213/370 (57%), Gaps = 22/370 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G E+ PIQA +LDG D+VG A+TG GKT AF LPILE L P +A +
Sbjct: 21 LAGLGYETPTPIQAQAIGPLLDGRDVVGLAQTGTGKTAAFALPILERLD--PDRAETQA- 77
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
L+L PTRELA QV + F Y GL +YGG Y AQ L++G VV+
Sbjct: 78 -------LILAPTRELALQVSDAFATYAARTPGLRILPVYGGQGYAAQLRGLQRGAHVVV 130
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH++RG+++LS L VLDEADEML MGF EDVE IL + +V LFSA
Sbjct: 131 GTPGRVIDHLDRGSLELSGLDHLVLDEADEMLTMGFAEDVERILADTPEDKQVA--LFSA 188
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P ++ ++ K+L +D+ +++T VR + + + ++ +
Sbjct: 189 TMPPAIRRLAKKYLND---PVDVATPAATRSTTTVRQRWISVPHHGKFDALTRLLEVENG 245
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G IIF TK++ +LA+ L A AL+GD+ Q+QRE + + G LVAT+V
Sbjct: 246 DG-MIIFVRTKQATEELAEKLRSRGFDAAALNGDLVQAQRERIVGQLKGGSLDILVATDV 304
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERES 477
AARGLD++ + +I + P D E+Y+HR GRTGRAG +G AV+ PR + +S IE+ S
Sbjct: 305 AARGLDVDRITHVINHDIPHDAESYVHRIGRTGRAGRSGEAVLFVTPRERRMLSAIEKVS 364
Query: 478 GVKFEHISAP 487
G E +S P
Sbjct: 365 GRPVEEMSVP 374
>gi|417303385|ref|ZP_12090443.1| cold-shock deAd box protein a [Rhodopirellula baltica WH47]
gi|327540357|gb|EGF26943.1| cold-shock deAd box protein a [Rhodopirellula baltica WH47]
Length = 862
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 178/487 (36%), Positives = 263/487 (54%), Gaps = 31/487 (6%)
Query: 64 RSETSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFR---ISVPL 120
+SE ++L PV + + + EP V+ ++ ES P A FR + +
Sbjct: 191 QSEPGAKLAPPVREELAPPAQNQSAQTAEP---VKAEKAPESNEP-AEPLFRDLDLRAEV 246
Query: 121 REKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASK 180
++ + + G + PIQA +LDG D++ +++TG GKT AF LPIL S+
Sbjct: 247 QKAVAASGYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFALPIL----------SR 296
Query: 181 KTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGID 239
R P VLVL PTRELA QV F YG + G +YGG Y Q +L++G+
Sbjct: 297 VDVRSRRPQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRRGVQ 356
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+GTPGR+ DH++RG +DL SL VLDEADEML MGF+EDV+ +L K + +V L
Sbjct: 357 VVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQV--AL 414
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSATLP ++ I+ ++L +D I + K + +VR L S + + I+
Sbjct: 415 FSATLPKPIRKIADEYL-NDPARITI--KSKTITAASVRQRALFVSPRDKIDALTRILEV 471
Query: 360 YSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
+ G I+FT+TK+S +A+ L A AL+GD+ Q RE T+ + G+ LVA
Sbjct: 472 EETDG-VIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLVA 530
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM-LYDPRKSSVSKIE 474
T+VAARGLD+ + + + P D E+Y+HR GRTGRAG +G A++ L + ++ + IE
Sbjct: 531 TDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQAIIFLTNAQRRQLRFIE 590
Query: 475 RESGVKFEHISAPQPADIAKAAGVEAAETITQVS-DSVIPAFKSAAEELLNNSGLSAAEL 533
+ E I P ADI +A + IT VS D + +K + SG E+
Sbjct: 591 NTTKQPIEIIDIPTVADINEARVRRFKQRITDVSADQDLTVYKDMIAQYAEESG-KPMEM 649
Query: 534 LAKALAK 540
+A ALA+
Sbjct: 650 IAAALAE 656
>gi|381398643|ref|ZP_09924046.1| DEAD/DEAH box helicase domain protein [Microbacterium
laevaniformans OR221]
gi|380774134|gb|EIC07435.1| DEAD/DEAH box helicase domain protein [Microbacterium
laevaniformans OR221]
Length = 625
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 159/398 (39%), Positives = 225/398 (56%), Gaps = 29/398 (7%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
LK G E+ IQA T +L G D++G A+TG GKT AF LPIL L S+KT
Sbjct: 67 LKDVGYETPSAIQAATIPPLLAGRDVLGTAQTGTGKTAAFALPILSQL-----DLSQKT- 120
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P LVL PTRELA QV E F+ Y G + G+ +YGG Y Q L++G+ +V+
Sbjct: 121 ----PQALVLAPTRELALQVCEAFESYAGHLRGVHVLPVYGGQGYGQQLSALRRGVHIVV 176
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGRI DH+++G +DLS L+F VLDEADEML+MGF EDVE IL +V LFSA
Sbjct: 177 GTPGRIMDHLDKGTLDLSELRFLVLDEADEMLKMGFAEDVETILADTPAGKQVA--LFSA 234
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ ++ +LK D + I++ K +TN+ L S + + I+ +
Sbjct: 235 TMPAQIRRLAGTYLK-DAEEINV--KAKTSTATNITQRYLIVSYPQKVDALTRILEVENF 291
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G I+FT TK LA+ L A A++GD+ Q QRE T+ + GK LVAT+V
Sbjct: 292 EG-MIVFTRTKNETETLAEKLRARGYAAAAINGDVAQVQRERTVNQLKDGKLDILVATDV 350
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERES 477
AARGLD+ + ++ + P D E+Y+HR GRTGRAG +G A+ PR + ++ IE+ +
Sbjct: 351 AARGLDVERISHVVNFDLPIDTESYVHRIGRTGRAGRSGDAISFVTPRERRMLASIEKAT 410
Query: 478 GVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAF 515
+S P D+ A +T+ D++ A
Sbjct: 411 RQPLTEMSLPTAEDV-------NATRLTRFDDAITAAL 441
>gi|397664785|ref|YP_006506323.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila]
gi|395128196|emb|CCD06401.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila]
Length = 566
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 160/411 (38%), Positives = 235/411 (57%), Gaps = 31/411 (7%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQA T ++L G D + A+TG GKT AF LPIL++L+ P ++ + L+L
Sbjct: 8 PIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQNLS--PEISTTQA--------LIL 57
Query: 194 LPTRELAKQVHEDFDV---YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKD 250
PTRELA QV E F++ Y V + C GG Y Q +L+ G VV+GTPGRI D
Sbjct: 58 APTRELAIQVAEQFELLSKYQRNVTIAVLC--GGQEYGRQLKQLRSGAQVVVGTPGRILD 115
Query: 251 HIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKH 310
HI++G + L++LK +LDEADEMLRMGF+EDVE IL K+ + K Q LFSAT+P ++
Sbjct: 116 HIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPE--KKQMALFSATMPYRIRQ 173
Query: 311 ISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTII 368
I+ +L +D +I++ +M+ +T ++ L S + + ++ G I+
Sbjct: 174 IANTYL-NDPASIEI----RMETATVKSIEQRFLFASVHQKPDALIRVLEVEDYQG-VIV 227
Query: 369 FTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLD 424
F TK S ++A+LL A A+HGDI QS RE +A F+ G LVAT+VAARGLD
Sbjct: 228 FVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILVATDVAARGLD 287
Query: 425 INDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS-VSKIERESGVKFEH 483
+ V +I + P D E Y+HR GRTGRAG +GV ++ P++S +S IER + + E
Sbjct: 288 VERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPKESRLISSIERHTRQRIEK 347
Query: 484 ISAPQPADIAKAAGVEAAETI-TQVSDSVIPAFKSAAEELLNNSGLSAAEL 533
+ P I A I T+++ + ++K EE + +SA ++
Sbjct: 348 VQVPNDHMIQMARQQRFMSNITTRLNHEHVYSYKRIVEEYIKEHDVSAVDV 398
>gi|110598397|ref|ZP_01386670.1| Helicase-like:DbpA, RNA-binding:DEAD/DEAH box helicase-like
[Chlorobium ferrooxidans DSM 13031]
gi|110340006|gb|EAT58508.1| Helicase-like:DbpA, RNA-binding:DEAD/DEAH box helicase-like
[Chlorobium ferrooxidans DSM 13031]
Length = 598
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 150/386 (38%), Positives = 221/386 (57%), Gaps = 22/386 (5%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P +++ PL + L+ G E+ PIQA T ++L+G D++G+A+TG GKT AF LP+
Sbjct: 8 PKDFRSLQLAEPLMQALEEVGYENPTPIQAETIPLLLEGRDVLGQAQTGTGKTAAFALPV 67
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAP 226
L ++ + P LVL PTRELA QV E F Y + G +YGG
Sbjct: 68 LSNIRLALAE----------PQALVLAPTRELAIQVAEAFQRYAVHLKGFHVVPIYGGQD 117
Query: 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286
Y Q LK+G+ VV+GTPGR+ DH+ RG+++L SL+ VLDEADEMLRMGF++DVE IL
Sbjct: 118 YGIQLRMLKRGVHVVVGTPGRVMDHMRRGSLNLDSLQCLVLDEADEMLRMGFIDDVEWIL 177
Query: 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346
+ +V LFSAT+PS ++ I+ K+L + + + K +R
Sbjct: 178 DQTPKDRQVA--LFSATMPSAIRRIAQKYLNNPAQ---VTIQTKTTTVETIRQRYWIVGG 232
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTL 402
S + ++ I+ G +IF TK +LA+ L GA AL+GD+ Q+QRE T+
Sbjct: 233 SHKLDILTRILEVEPFDG-ILIFVRTKTMTIELAEKLQARGYGAAALNGDMAQNQRERTV 291
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
++G ++AT+VAARGLD+ + +I + P D E+Y+HR GRTGRAG TG A++
Sbjct: 292 DQLKNGALSIVIATDVAARGLDVERISHVINYDIPSDTESYVHRIGRTGRAGRTGDAILF 351
Query: 463 YDPR-KSSVSKIERESGVKFEHISAP 487
PR K+ + IE+ + + E + P
Sbjct: 352 VSPREKNMLYAIEKATHSRIELMELP 377
>gi|62390044|ref|YP_225446.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
13032]
gi|41325380|emb|CAF19860.1| Superfamily II DNA and RNA helicase [Corynebacterium glutamicum
ATCC 13032]
Length = 732
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 162/459 (35%), Positives = 247/459 (53%), Gaps = 26/459 (5%)
Query: 100 QERGESEHPNAVSRFR-ISVPLR--EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTG 156
Q ES A S F + +P R + ++ G E+ PIQA T ++++G D+VG A+TG
Sbjct: 90 QPSNESSSTEAKSGFDALGLPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTG 149
Query: 157 QGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG- 215
GKT AF LPIL + R+P LVL PTRE A QV + F + VG
Sbjct: 150 TGKTAAFALPILARIDKSV----------RSPQALVLAPTREQALQVADSFQSFADHVGG 199
Query: 216 LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275
L +YGG Y Q L++G +V+GTPGRI DH+E+G++D+S L+F VLDEADEML
Sbjct: 200 LNVLPIYGGQAYGIQLSGLRRGAHIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLN 259
Query: 276 MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335
MGF EDVE IL D +V LFSAT+P+ ++ +S ++L + ++ + + +T
Sbjct: 260 MGFQEDVERILEDTPDEKQVA--LFSATMPNGIRRLSKQYLNN---PAEITVKSETRTNT 314
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHG 391
N+ L + + + I+ I+F TK ++A+ L A A++G
Sbjct: 315 NITQRFLNVAHRNKMDALTRILEVTEFEA-MIMFVRTKHETEEVAEKLRARGFSAAAING 373
Query: 392 DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451
DI Q+QRE T+ + G+ LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTG
Sbjct: 374 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTG 433
Query: 452 RAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQ-VSD 509
RAG TG A++ PR + + IER + + P + V+ A++IT+ + D
Sbjct: 434 RAGRTGEAILFVTPRERRMLRSIERATNAPLHEMELPTVDQVNDFRKVKFADSITKSLED 493
Query: 510 SVIPAFKSAAEELLNNSGLSAAELLAKALAKAVVSAFLF 548
+ F++ +E + + ++ A +A FL
Sbjct: 494 KQMDLFRTLVKEYSQANDVPLEDIAAALATQAQSGDFLL 532
>gi|400977173|ref|ZP_10804404.1| ATP-dependent RNA helicase [Salinibacterium sp. PAMC 21357]
Length = 652
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 153/375 (40%), Positives = 218/375 (58%), Gaps = 22/375 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
++ G E+ IQA T +L+G D+VG A+TG GKT AF LPIL L +K
Sbjct: 32 VRDIGYETPSAIQAATIPTLLEGRDVVGLAQTGTGKTAAFALPILSRLDVSQSK------ 85
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P LVL PTRELA QV E F+ Y + G+ +YGG Y Q L++G+ VV+
Sbjct: 86 ----PQALVLSPTRELALQVCEAFEKYATHMRGVHVLPVYGGQAYGVQLSALRRGVHVVV 141
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGRI DH+ +G +DLS LK+ VLDEADEML+MGF EDVE IL D +V LFSA
Sbjct: 142 GTPGRIMDHLAKGTLDLSELKYLVLDEADEMLKMGFAEDVETILADTPDDKQVA--LFSA 199
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ IS K+L ++ + I + A+T+ R++V+ S + + I+ +
Sbjct: 200 TMPAQIRRISKKYL-NNAEEITVKSQTTTSANTSQRYLVV--SYPQKVDALTRILEVENF 256
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G I+F TK LA+ L A A+ GD+ Q+QRE T+ +SGK LVAT+V
Sbjct: 257 EG-MIVFVRTKSETENLAEKLRARGYSAAAISGDVAQAQRERTVNQLKSGKLDILVATDV 315
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERES 477
AARGLD++ + ++ + P D E+Y+HR GRTGRAG +G A+ PR + ++ IE+ +
Sbjct: 316 AARGLDVDRISHVVNFDIPVDTESYVHRIGRTGRAGRSGSAISFVTPRERRLLTAIEKAT 375
Query: 478 GVKFEHISAPQPADI 492
+ P D+
Sbjct: 376 RQPLTQMQLPSVEDV 390
>gi|254482185|ref|ZP_05095426.1| DbpA RNA binding domain family protein [marine gamma
proteobacterium HTCC2148]
gi|214037510|gb|EEB78176.1| DbpA RNA binding domain family protein [marine gamma
proteobacterium HTCC2148]
Length = 618
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 168/450 (37%), Positives = 248/450 (55%), Gaps = 27/450 (6%)
Query: 110 AVSRFR---ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLP 166
AVS F +S PL++ L G E+ IQA T +++G D++G+A+TG GKT AF LP
Sbjct: 6 AVSSFAELALSEPLQKALADVGYETPSAIQAATIPALIEGRDVLGQAQTGTGKTAAFALP 65
Query: 167 ILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGA 225
IL L +AS K P VLVL PTRELA QV E F Y + +YGGA
Sbjct: 66 ILAQL-----QASSKK-----PQVLVLAPTRELAIQVAEAFQKYARYLKDFHVVPIYGGA 115
Query: 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285
Y Q +L++G+ VV+GTPGR+ DH+ RG++DLS+L+ VLDEADEMLRMGF++DVE I
Sbjct: 116 DYRGQLRQLQRGVQVVVGTPGRVMDHMRRGSLDLSALRTLVLDEADEMLRMGFIDDVEWI 175
Query: 286 LGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
L + D Q LFSAT+P+ + I+ + L + + + + + ++R V +
Sbjct: 176 LEQTPDDR--QIALFSATMPTAIARIAKQHLNN---PVHVAIEVQTMTNKSIRQRVWMMA 230
Query: 346 SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVT 401
+ + I+ G I+F T+ + +++A+ L A AL+GDI Q QRE T
Sbjct: 231 GVHKLDALTRILEVEDFDG-VIVFVRTRIATAEIAEKLAARGYSAAALNGDIPQKQREAT 289
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
+ + G LVAT+VAARGLD+ + +I + P DVEAY+HR GRTGRAG G A++
Sbjct: 290 IDNLKRGTIDILVATDVAARGLDVERISHVINYDIPYDVEAYVHRIGRTGRAGREGDAIL 349
Query: 462 LYDPRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSV-IPAFKSAA 519
R+ + + IE+ +G E + P + + + IT+ D+V + F+
Sbjct: 350 FAANRERRLLRAIEKATGT-IEKMELPSVEQVTDKRIGKFKQRITETLDTVELDLFRKLV 408
Query: 520 EELLNNSGLSAAELLAKALAKAVVSAFLFS 549
E+ G+ ++ A A A S L +
Sbjct: 409 EDYQGEYGVPVMDIAAALGAMAQGSKLLVA 438
>gi|15807648|ref|NP_295347.1| RNA helicase [Deinococcus radiodurans R1]
Length = 560
Score = 255 bits (651), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 140/308 (45%), Positives = 207/308 (67%), Gaps = 13/308 (4%)
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
+DVV+GTPGR+ DH+ERGN+DLS+++F VLDEADEML +GF + +E IL K + QT
Sbjct: 1 MDVVVGTPGRLIDHLERGNLDLSAVQFAVLDEADEMLSVGFADAIETILQKTPEER--QT 58
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
+LFSATL + +K +S +LK D +D+VG K +A+ V H+ + S R++V+ D++
Sbjct: 59 MLFSATLNNDIKRLSRNYLK-DPLIVDMVGEGKSQAAQTVEHLKVKVGRS-RTRVLADLL 116
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
Y+ + I+FT TK A +LA+ L + ALHGD+ Q+QRE L FRSG+ L
Sbjct: 117 TVYNPE-KAIVFTRTKREADELANELIHRGLESEALHGDLAQTQRERALGAFRSGRVGVL 175
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSK 472
VAT+VAARGLDI +V L++Q P+D E+Y+HRSGRTGRAG TG A+++Y R++ V
Sbjct: 176 VATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIIMYGDRENREVMG 235
Query: 473 IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAE 532
+ER +GV+F+ P P+++A+A+ ++E + +V F++ AE+L + GL A
Sbjct: 236 LERITGVRFKERPLPTPSEVAQASARASSEMVRRVDPEAAQGFQAEAEQLFSELGLEA-- 293
Query: 533 LLAKALAK 540
LA+ALAK
Sbjct: 294 -LARALAK 300
>gi|260904108|ref|ZP_05912430.1| DNA/RNA helicase, superfamily II [Brevibacterium linens BL2]
Length = 489
Score = 255 bits (651), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 158/386 (40%), Positives = 222/386 (57%), Gaps = 41/386 (10%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT--- 172
++ P+ L +KGI FPIQAMT + L G+D++G+A+TG GKTL F +P+L+ +
Sbjct: 13 VAGPIVAALAAKGITHPFPIQAMTLPVALSGADIIGQAKTGTGKTLGFGIPLLQRVVGKN 72
Query: 173 ----------NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLY 222
N P S T R P LV++PTRELAKQV D + +Y
Sbjct: 73 EDGAAPADPENTPEFVSDST-ETRLPQALVVVPTRELAKQVAADLVTASTQRDIDIMTIY 131
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG + Q KLK G+DVV+GTPGR+ D R + L ++ VLDEADEML +GF+ DV
Sbjct: 132 GGMDFDPQIKKLKSGVDVVVGTPGRLLDLYGRKVLRLHKVRTVVLDEADEMLDLGFLPDV 191
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLK-------SDKKTIDLVGNEKMKAST 335
E I+ V A++ QT+LFSAT+P V ++ +++ D + + L+G
Sbjct: 192 EKIINAVP-AHR-QTMLFSATMPGAVITLARRYMSRPTHIRAHDNEDLSLLGK------- 242
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARA-----LH 390
N +V S +S+++ +++ G RTIIFT TK +A +LA L G R LH
Sbjct: 243 NTEQLVYRAHSMDKSELVARMLQAEGRG-RTIIFTRTKRTADKLAAEL-GDRGFQVKPLH 300
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
GD+ Q+QRE L FR G+ LVAT+VAARG+DI+DV ++ + P D + Y+HR GRT
Sbjct: 301 GDLGQAQREKALKSFREGQVDVLVATDVAARGIDIDDVTHVVNYQCPDDEKTYVHRIGRT 360
Query: 451 GRAGNTGVAVMLYD----PRKSSVSK 472
GRAGNTG+AV L D PR ++K
Sbjct: 361 GRAGNTGIAVTLVDWDDMPRWRLINK 386
>gi|453364213|dbj|GAC80062.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia malaquae NBRC
108250]
Length = 574
Score = 255 bits (651), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 157/415 (37%), Positives = 230/415 (55%), Gaps = 23/415 (5%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F I +R + G E+ PIQA T +L+G D+VG A+TG GKT AF +P+L
Sbjct: 18 FDIDGRVRAAVDEVGYETPSPIQAATIPPLLEGRDVVGLAQTGTGKTAAFAIPVL----- 72
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEF 232
S+ R P LVL PTRELA QV E F Y + + +YGG Y Q
Sbjct: 73 -----SRIDTSARKPQALVLAPTRELALQVSEAFGRYASKMPEVKVLPIYGGQSYGVQLS 127
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G V++GTPGR+ DH+++G +DLS L+F VLDEADEML MGF EDVE IL D
Sbjct: 128 GLRRGAQVIVGTPGRVIDHLDKGTLDLSELEFLVLDEADEMLTMGFAEDVERILADTPD- 186
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
K Q LFSAT+P+ + ++ K+L + + ++ K ++N+ L S +
Sbjct: 187 -KKQVALFSATMPASIGRLARKYLNNPQ---EVTVKAKTATASNITQKYLQVSHQRKLDA 242
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408
+ ++ + G IIF TK + +LA+ L A A++GD+ Q+QRE T+ + G
Sbjct: 243 LTRVLEVETFDG-MIIFARTKSATEELAEKLRSRGLSAMAINGDMVQAQRERTINQLKDG 301
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS 468
LVAT+VAARGLD++ + ++ + P DVE+Y+HR GRTGRAG +G A++ PR+
Sbjct: 302 SLDILVATDVAARGLDVDRISHVVNYDIPHDVESYVHRIGRTGRAGRSGTALLFVSPRER 361
Query: 469 SVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETIT-QVSDSVIPAFKSAAEE 521
+ + IER + E I P D+ + A++IT + S + F+ E
Sbjct: 362 HLLRSIERHTRQSIEEIDLPSVDDVNAQRVAKFADSITSNLGSSNLDMFRGLVEN 416
>gi|348169282|ref|ZP_08876176.1| ATP-dependent RNA helicase [Saccharopolyspora spinosa NRRL 18395]
Length = 576
Score = 255 bits (651), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 156/413 (37%), Positives = 225/413 (54%), Gaps = 37/413 (8%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ L G E+ PIQ T ++L+G D++G A+TG GKT AF LPIL L
Sbjct: 15 QTLTEIGYETPSPIQEKTIPLLLEGRDVLGLAQTGTGKTAAFALPILSRLDLD------- 67
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDV 240
P LVL PTRELA QV E F Y + G +YGG Y Q L++G V
Sbjct: 68 ---AAGPQALVLAPTRELAIQVSEAFQRYAAHIPGFHVLPIYGGTSYGPQLAGLRRGAHV 124
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGR+ DH+E+G++DL+ LK VLDEADEMLRMGF+EDVE IL V + +V LF
Sbjct: 125 VVGTPGRLIDHLEKGSLDLTGLKNLVLDEADEMLRMGFIEDVEKILQSVPASRQVA--LF 182
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P ++ IS +L + +++ K +TN+ +P ++ + + I+
Sbjct: 183 SATMPGAIRKISQNYLN---EPVEISVKTKTSTATNINQRHVPVRAANKLDALTRILEVE 239
Query: 361 SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
+ I+F TK+ +LA+ L A A++GDI Q+QRE T+ R GK LVAT
Sbjct: 240 TFDA-MIVFVRTKQLTEELAEKLQARGFSAAAINGDIAQAQRERTIGHLRDGKIDILVAT 298
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IER 475
+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + + IER
Sbjct: 299 DVAARGLDVERISHVLNYDIPHDTESYVHRVGRTGRAGRSGEAILFVSPRERHLLRSIER 358
Query: 476 ESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGL 528
+ + + P +I V+D + F + + L GL
Sbjct: 359 ATRQHIQQMELP---------------SIDAVNDRRLAKFAQSITDTLAKGGL 396
>gi|418419638|ref|ZP_12992821.1| cold-shock DEAD box protein A-like protein (ATP-dependent RNA
helicase DEAD-like protein) [Mycobacterium abscessus
subsp. bolletii BD]
gi|364001268|gb|EHM22464.1| cold-shock DEAD box protein A-like protein (ATP-dependent RNA
helicase DEAD-like protein) [Mycobacterium abscessus
subsp. bolletii BD]
Length = 598
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 158/404 (39%), Positives = 225/404 (55%), Gaps = 33/404 (8%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE--SLTNGPTKASKKTGYG 185
G E+ IQA T +L GSD+VG A+TG GKT AF +PIL LT+ T+A
Sbjct: 42 GYETPSAIQAATIPPLLAGSDVVGLAQTGTGKTAAFAIPILSKIDLTSKDTQA------- 94
Query: 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGT 244
LVL PTRELA QV E F YG + L +YGG Y Q LK+G VV+GT
Sbjct: 95 -----LVLAPTRELALQVSEAFGRYGAHMPKLNVLPIYGGQSYVVQLAGLKRGAQVVVGT 149
Query: 245 PGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304
PGR+ DH+ERG +DLS L + VLDEADEML MGF EDVE IL + +V LFSAT+
Sbjct: 150 PGRVIDHLERGTLDLSHLDYLVLDEADEMLTMGFAEDVERILADTPEYKQVA--LFSATM 207
Query: 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
P+ ++ ++ K+L +++ + K + N+ + + + + I+ +
Sbjct: 208 PTTIRRLTKKYLHD---PVEIKIDAKTSTAENITQRFIQVAGPRKMDALTRILEVETFEA 264
Query: 365 RTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
I+F TK++ ++AD L A A++GDI QSQRE T+ ++G LVAT+VAA
Sbjct: 265 -MIVFVRTKQATEEVADKLKARGFAAAAINGDINQSQRERTINALKAGTIDILVATDVAA 323
Query: 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGV 479
RGLD+ + ++ + P D E+Y+HR GRTGRAG +G AV+ PR+ + K IE+ +G
Sbjct: 324 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTAVLFVSPRERHLLKAIEKTTGA 383
Query: 480 KFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELL 523
K P D+ A+ +T+ D++ A + EL
Sbjct: 384 KLAEEPLPSVEDV-------NAQRVTKFRDAITAALAAPEVELF 420
>gi|194477246|ref|YP_002049425.1| putative ATP-dependent RNA helicase [Paulinella chromatophora]
gi|171192253|gb|ACB43215.1| putative ATP-dependent RNA helicase [Paulinella chromatophora]
Length = 631
Score = 254 bits (650), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 152/387 (39%), Positives = 223/387 (57%), Gaps = 22/387 (5%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F ++ + + + KG + PIQA ++ G DLVG+A+TG GKT AF LP+L +
Sbjct: 66 FGLNAEILQAVTEKGYKQPSPIQAAAIPELMLGRDLVGQAQTGTGKTAAFALPLLARMD- 124
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEF 232
P + R+P VLVL PTRELA QV + F Y + + +YGGA + Q
Sbjct: 125 -PDQ--------RSPQVLVLAPTRELAVQVADSFSTYAAHLPHIRVLPVYGGADFRDQIN 175
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
+LK+GI VV+GTPGR+ DH+ +G +DLS L+ VLDEADEMLRMGF++DVE I+ ++
Sbjct: 176 RLKRGIQVVVGTPGRVMDHMRQGTLDLSGLRVLVLDEADEMLRMGFIDDVEWIIEQL--P 233
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ Q +LFSAT+P+ ++ IS +L + ++ +K ++ +R L + + +
Sbjct: 234 KQRQVVLFSATMPTEIRRISLNYLNNPA---EITIRQKGSDASRIRQRYLMVHAPHKLEA 290
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408
+ ++ + G IIF TK +A+ L L+GD+ QSQRE T+ R G
Sbjct: 291 LNRVLEAETGEG-VIIFGRTKAITVTIAESLELTGHDVAVLNGDVAQSQRERTIERLRKG 349
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-K 467
LVAT+VAARGLD++ V L+I + P D EAY+HR GRTGRAG TG A++ PR +
Sbjct: 350 SINILVATDVAARGLDVDRVSLVINYDIPFDSEAYVHRIGRTGRAGRTGDAILFLTPRER 409
Query: 468 SSVSKIERESGVKFEHISAPQPADIAK 494
+ +ER G E + P A I +
Sbjct: 410 RFLGGLERAVGRPIEPMDVPSNATINQ 436
>gi|375140808|ref|YP_005001457.1| DNA/RNA helicase [Mycobacterium rhodesiae NBB3]
gi|359821429|gb|AEV74242.1| DNA/RNA helicase, superfamily II [Mycobacterium rhodesiae NBB3]
Length = 562
Score = 254 bits (650), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 155/407 (38%), Positives = 223/407 (54%), Gaps = 28/407 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ +K G ES IQA T +L GSD+VG A+TG GKT AF +PIL SK
Sbjct: 26 QAVKEVGYESPSAIQAATIPAMLKGSDVVGLAQTGTGKTAAFAIPIL----------SKI 75
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
R LVL PTRELA QV E F YG + + +YGG+ Y Q LK+G +V
Sbjct: 76 DTNSRTTQALVLAPTRELALQVAEAFSRYGAHLHVNVLPVYGGSSYGPQLAGLKRGAQIV 135
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
+GTPGR+ DH+E+G +D+S L + VLDEADEML+MGF EDVE IL + +V LFS
Sbjct: 136 VGTPGRVIDHLEKGTLDVSHLDYMVLDEADEMLQMGFAEDVERILADTPEYKQVA--LFS 193
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
AT+P +K I++K+L +++ K + + N+ + S + + ++
Sbjct: 194 ATMPPAIKKITSKYLHG---PVEVTVKSKTQTAENITQRYIQVSYPRKMDALTRLLEV-E 249
Query: 362 SGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
G I+F TK++ ++A+ L A A++GDI Q+ RE T+ + G LVAT+
Sbjct: 250 QGDAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQAVRERTINSLKDGSLDILVATD 309
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERE 476
VAARGLD+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + K IER
Sbjct: 310 VAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLKSIERV 369
Query: 477 SGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELL 523
+ K I P D+ A + + DS+ A + EL
Sbjct: 370 TRQKLVEIELPSVDDV-------NANRVAKFRDSITEALAAPGIELF 409
>gi|449135622|ref|ZP_21771069.1| cold-shock deAd-box protein a [Rhodopirellula europaea 6C]
gi|448885676|gb|EMB16100.1| cold-shock deAd-box protein a [Rhodopirellula europaea 6C]
Length = 851
Score = 254 bits (650), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 167/432 (38%), Positives = 241/432 (55%), Gaps = 28/432 (6%)
Query: 120 LREKLK----SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
LRE+++ + G + PIQA +LDG D++ +++TG GKT AF LPIL
Sbjct: 232 LREEVQKAVAASGYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFALPIL------- 284
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
S+ R P VLVL PTRELA QV F YG + G +YGG Y Q +L
Sbjct: 285 ---SRVDVRNRRPQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQL 341
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G+ VV+GTPGR+ DH++RG +DL SL VLDEADEML MGF+EDV+ +L K + +
Sbjct: 342 RRGVQVVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKTPEGRQ 401
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
V LFSATLP ++ I+ ++L +D I + K + +VR L S + +
Sbjct: 402 V--ALFSATLPKPIRKIADEYL-NDPARITI--KSKTITAASVRQRALFVSPRDKIDALT 456
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410
I+ + G I+FT+TK+S +A+ L A AL+GD+ Q RE T+ + G+
Sbjct: 457 RILEVEETDG-VIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQL 515
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM-LYDPRKSS 469
LVAT+VAARGLD+ + + + P D E+Y+HR GRTGRAG +G A++ L + ++
Sbjct: 516 DVLVATDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQAIIFLTNAQRRQ 575
Query: 470 VSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVS-DSVIPAFKSAAEELLNNSGL 528
+ IE + E I P ADI +A + IT VS D + +K + SG
Sbjct: 576 LRFIENTTKQPIEIIDIPTVADINEARVRRFKQRITDVSADQDLTIYKDMIAQYAEESG- 634
Query: 529 SAAELLAKALAK 540
E++A ALA+
Sbjct: 635 KPMEMIAAALAE 646
>gi|365869382|ref|ZP_09408929.1| cold-shock DEAD box protein A-like protein (ATP-dependent RNA
helicase DEAD-like protein) [Mycobacterium massiliense
CCUG 48898 = JCM 15300]
gi|414582556|ref|ZP_11439696.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-1215]
gi|420876743|ref|ZP_15340115.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0304]
gi|420881759|ref|ZP_15345123.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0421]
gi|420888066|ref|ZP_15351420.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0422]
gi|420893793|ref|ZP_15357135.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0708]
gi|420898622|ref|ZP_15361958.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0817]
gi|420903935|ref|ZP_15367256.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-1212]
gi|420970934|ref|ZP_15434131.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0921]
gi|421048242|ref|ZP_15511238.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
CCUG 48898 = JCM 15300]
gi|363998839|gb|EHM20045.1| cold-shock DEAD box protein A-like protein (ATP-dependent RNA
helicase DEAD-like protein) [Mycobacterium massiliense
CCUG 48898 = JCM 15300]
gi|392090420|gb|EIU16233.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0304]
gi|392090814|gb|EIU16625.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0421]
gi|392092626|gb|EIU18431.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0422]
gi|392102383|gb|EIU28170.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0708]
gi|392107863|gb|EIU33645.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0817]
gi|392109193|gb|EIU34971.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-1212]
gi|392117708|gb|EIU43476.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-1215]
gi|392171906|gb|EIU97579.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0921]
gi|392242407|gb|EIV67894.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
CCUG 48898]
Length = 598
Score = 254 bits (650), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 158/404 (39%), Positives = 225/404 (55%), Gaps = 33/404 (8%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE--SLTNGPTKASKKTGYG 185
G E+ IQA T +L GSD+VG A+TG GKT AF +PIL LT+ T+A
Sbjct: 42 GYETPSAIQAATIPPLLAGSDVVGLAQTGTGKTAAFAIPILSKIDLTSKDTQA------- 94
Query: 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGT 244
LVL PTRELA QV E F YG + L +YGG Y Q LK+G VV+GT
Sbjct: 95 -----LVLAPTRELALQVAEAFGRYGAHMPKLNVLPIYGGQSYVVQLAGLKRGAQVVVGT 149
Query: 245 PGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304
PGR+ DH+ERG +DLS L + VLDEADEML MGF EDVE IL + +V LFSAT+
Sbjct: 150 PGRVIDHLERGTLDLSHLDYLVLDEADEMLTMGFAEDVERILADTPEYKQVA--LFSATM 207
Query: 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
P+ ++ ++ K+L +++ + K + N+ + + + + I+ +
Sbjct: 208 PTTIRRLTKKYLHD---PVEIKIDAKTSTAENITQRFIQVAGPRKMDALTRILEVETFEA 264
Query: 365 RTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
I+F TK++ ++AD L A A++GDI QSQRE T+ ++G LVAT+VAA
Sbjct: 265 -MIVFVRTKQATEEVADKLKARGFAAAAINGDINQSQRERTINALKAGTIDILVATDVAA 323
Query: 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGV 479
RGLD+ + ++ + P D E+Y+HR GRTGRAG +G AV+ PR+ + K IE+ +G
Sbjct: 324 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTAVLFVSPRERHLLKAIEKTTGA 383
Query: 480 KFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELL 523
K P D+ A+ +T+ D++ A + EL
Sbjct: 384 KLAEEPLPSVEDV-------NAQRVTKFRDAITAALAAPEVELF 420
>gi|312138933|ref|YP_004006269.1| dead/deah box helicase [Rhodococcus equi 103S]
gi|311888272|emb|CBH47584.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
Length = 610
Score = 254 bits (650), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 157/425 (36%), Positives = 235/425 (55%), Gaps = 29/425 (6%)
Query: 99 EQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQG 158
E++ ++P + +I + + L G ES PIQA T +L+G D+VG A+TG G
Sbjct: 5 ERDPQTDDNPITFADLQIDERVLKALSDVGYESPSPIQAATIPTLLEGKDVVGLAQTGTG 64
Query: 159 KTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLT 217
KT AF +PIL L +K P L+L PTRELA QV E F Y + GL
Sbjct: 65 KTAAFAIPILSRL-----DVDRKV-----PQALILAPTRELALQVAEAFGKYSAHIPGLQ 114
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
+YGG Y Q L++G +++GTPGR+ DH+E+G +DLS+L++ VLDEADEML+MG
Sbjct: 115 VLPIYGGQAYGVQLSGLRRGAQIIVGTPGRVIDHLEKGTLDLSNLEYLVLDEADEMLKMG 174
Query: 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337
F +DVE IL + +V LFSAT+P ++ IS ++L +++ K ++N+
Sbjct: 175 FQDDVERILADTPEYKQVA--LFSATMPPAIRKISKQYLHD---PVEITVKAKTATASNI 229
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDI 393
+ + + + I+ S IIF TK++ LA+ L A A++GDI
Sbjct: 230 TQRWVQVAHQRKLDALTRILEVESFEA-MIIFVRTKQATEDLAERLRARGFSAAAINGDI 288
Query: 394 QQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA 453
Q+QRE T+ +SG LVAT+VAARGLD++ + ++ + P D E+Y+HR GRTGRA
Sbjct: 289 VQAQRERTIGQLKSGALDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRA 348
Query: 454 GNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVI 512
G TG A++ PR+ + K IER + I P D+ A+ +++ DS+
Sbjct: 349 GRTGDALLFVAPRERHLLKSIERTTRQPLTEIQLPTVEDV-------NAQRVSKFGDSIT 401
Query: 513 PAFKS 517
+ S
Sbjct: 402 ESLNS 406
>gi|452910044|ref|ZP_21958727.1| Cold-shock DEAD-box protein A [Kocuria palustris PEL]
gi|452835004|gb|EME37802.1| Cold-shock DEAD-box protein A [Kocuria palustris PEL]
Length = 606
Score = 254 bits (649), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 162/435 (37%), Positives = 245/435 (56%), Gaps = 34/435 (7%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT-----NGPTKA 178
L++ G E PIQ T ++L+G D+VG A+TG GKT AF +P L L NGP+ +
Sbjct: 30 LEAIGYEKPSPIQEATIPVLLEGRDVVGMAQTGTGKTAAFAVPALSRLAELADLNGPSTS 89
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGL---TSCCLYGGAPYHAQEFKLK 235
++ VLVL PTRELA QV E F Y AV L T +YGG+ Y Q L+
Sbjct: 90 TQ---------VLVLAPTRELALQVGEAFASY--AVQLEDFTVLPVYGGSSYGPQLAGLR 138
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
+G VV+GTPGR+ DH++RG++ L L++ VLDEADEMLRMGF EDVE IL + + +V
Sbjct: 139 RGAQVVVGTPGRVIDHLKRGSLKLDDLQYLVLDEADEMLRMGFAEDVETILSQTPEDKQV 198
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
LFSAT+P ++ I+ ++L++ + ++ K +TN+R L + + + +
Sbjct: 199 A--LFSATMPPAIRKIAQRYLRNPE---EISVKAKTSTATNIRQRYLQVMGAHKLEAMTR 253
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLL----PGARALHGDIQQSQREVTLAGFRSGKFM 411
++ G I+F TK + ++A+ L A A++GDI Q RE ++ RSGK
Sbjct: 254 LLEVEEHDG-IIVFVRTKAATEEVAEKLRARGHAATAINGDIPQQAREKSVEQLRSGKID 312
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSV 470
LVAT+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG +G A++ PR K +
Sbjct: 313 ILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLL 372
Query: 471 SKIERESGVKFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKSAAEELLNNSGLS 529
IE+ + E + P D+ + + ++IT + + AF+ + + +
Sbjct: 373 RAIEKTTRQPVEQMPMPSVEDVNRTRVDQFGQSITDTIETQDLSAFREMVTAYVEDHDVD 432
Query: 530 AAELLAKALAKAVVS 544
E+ A A AV+S
Sbjct: 433 PLEV---AAALAVIS 444
>gi|404214520|ref|YP_006668715.1| DNA and RNA helicase, Superfamily II [Gordonia sp. KTR9]
gi|403645319|gb|AFR48559.1| DNA and RNA helicase, Superfamily II [Gordonia sp. KTR9]
Length = 590
Score = 254 bits (649), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 157/427 (36%), Positives = 236/427 (55%), Gaps = 24/427 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+R + G E+ PIQA T +L G D+VG A+TG GKT AF +PIL L
Sbjct: 29 VRAAVTDVGYETPSPIQAATIPTLLSGRDVVGLAQTGTGKTAAFAIPILSRLDTS----- 83
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGI 238
R P L+L PTRELA QV E F Y + + +YGG Y Q L++G
Sbjct: 84 -----ARTPQALILAPTRELALQVSEAFGRYSAHMPEVKVLPIYGGQSYGVQLAGLRRGA 138
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
V++GTPGR+ DH++R +D+S L+F VLDEADEML MGF EDVE IL + D +V
Sbjct: 139 QVIVGTPGRVIDHLDRKTLDISGLEFLVLDEADEMLTMGFAEDVERILAETPDTKQVA-- 196
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+PS ++ ++ K+L S + ++ K + N+ L S + + +
Sbjct: 197 LFSATMPSAIRRLAQKYLNSPQ---EITVKSKTATAQNITQRYLQVSHQRKLDALTRFLE 253
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ I+F TK++ +LA+ L A A++GD+ Q+QRE T+ ++G LV
Sbjct: 254 VETFDA-MIVFVRTKQATEELAEKLRSRGFSAVAINGDLAQAQRERTINQLKNGSIDILV 312
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-I 473
AT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + + I
Sbjct: 313 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALLFVSPRERHLLRAI 372
Query: 474 ERESGVKFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKSAAEELLNNSGLSAAE 532
ER + I P D+ + A++ITQ +S + F+ E ++ ++ A+
Sbjct: 373 ERATRQTLTEIGLPSVDDVNAQRVAKFADSITQNLSSENLDLFRGLIENYARDNDVTMAD 432
Query: 533 LLAKALA 539
+A ALA
Sbjct: 433 -IAAALA 438
>gi|255326979|ref|ZP_05368055.1| dead/deah box helicase [Rothia mucilaginosa ATCC 25296]
gi|255296196|gb|EET75537.1| dead/deah box helicase [Rothia mucilaginosa ATCC 25296]
Length = 565
Score = 254 bits (649), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 142/355 (40%), Positives = 205/355 (57%), Gaps = 7/355 (1%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F + + + L + GI S FPIQ +T + L G D++G+A+TG GKTL F LP ++ +
Sbjct: 19 FGVRQDISDALAAVGITSPFPIQELTLPVALSGQDIIGQAKTGTGKTLGFGLPTIQRVVG 78
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
+ Y AP L+L+PTRELA QV ED + LYGG P Q
Sbjct: 79 RDDEGWADLEYPGAPQALILVPTRELAIQVGEDLAIAAKLRNARVATLYGGVPIEPQAEL 138
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L++G++V +GTPGRI D ++G ++L +K VLDEADEML +GF VE IL + +
Sbjct: 139 LRRGLEVAVGTPGRIIDLYQQGFLNLKQVKIVVLDEADEMLDLGFQPSVEKILSYLPEDR 198
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
Q++LFSAT+P V ++ +++ + + K ++R +V + ++I
Sbjct: 199 --QSMLFSATMPGPVIAMARQYMTKPMRISAADPEDASKTKASIRQVVYRAHHLDKDEMI 256
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409
I+R + GRT+IFT+TK A+++A+ L A LHGD+ Q RE L FR+GK
Sbjct: 257 GRILRA-TGRGRTVIFTKTKRDAARVAEELVNRGFAAAPLHGDLNQVAREQALKAFRTGK 315
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
LVAT+VAARG+D+ DV +I P D + Y+HR+GRTGRAGN G AV L D
Sbjct: 316 VDILVATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGNEGTAVTLVD 370
>gi|169628494|ref|YP_001702143.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
ATCC 19977]
gi|419716620|ref|ZP_14244016.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
M94]
gi|420863361|ref|ZP_15326754.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0303]
gi|420867758|ref|ZP_15331143.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0726-RA]
gi|420872190|ref|ZP_15335570.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0726-RB]
gi|420908973|ref|ZP_15372286.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0125-R]
gi|420915356|ref|ZP_15378661.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0125-S]
gi|420919746|ref|ZP_15383044.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0728-S]
gi|420926243|ref|ZP_15389528.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-1108]
gi|420965711|ref|ZP_15428925.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0810-R]
gi|420976589|ref|ZP_15439771.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0212]
gi|420981969|ref|ZP_15445139.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0728-R]
gi|420986517|ref|ZP_15449678.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0206]
gi|421006515|ref|ZP_15469630.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0119-R]
gi|421011836|ref|ZP_15474929.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0122-R]
gi|421016756|ref|ZP_15479823.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0122-S]
gi|421022668|ref|ZP_15485716.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0731]
gi|421028023|ref|ZP_15491060.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0930-R]
gi|421033882|ref|ZP_15496904.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0930-S]
gi|421039073|ref|ZP_15502084.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0116-R]
gi|421042545|ref|ZP_15505550.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0116-S]
gi|169240461|emb|CAM61489.1| Probable cold-shock DEAD box protein A homolog (ATP-dependent RNA
helicase DEAD homolog) [Mycobacterium abscessus]
gi|382940906|gb|EIC65228.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
M94]
gi|392073161|gb|EIT99001.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0726-RA]
gi|392073881|gb|EIT99719.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0303]
gi|392076379|gb|EIU02212.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0726-RB]
gi|392121347|gb|EIU47112.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0125-R]
gi|392123040|gb|EIU48802.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0125-S]
gi|392133751|gb|EIU59493.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0728-S]
gi|392138651|gb|EIU64384.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-1108]
gi|392170848|gb|EIU96525.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0212]
gi|392173987|gb|EIU99653.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0728-R]
gi|392187934|gb|EIV13573.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0206]
gi|392202267|gb|EIV27864.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0119-R]
gi|392210240|gb|EIV35810.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0122-R]
gi|392215365|gb|EIV40913.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0731]
gi|392215856|gb|EIV41403.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0122-S]
gi|392227287|gb|EIV52801.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0116-R]
gi|392230423|gb|EIV55933.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0930-S]
gi|392231929|gb|EIV57433.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0930-R]
gi|392241611|gb|EIV67099.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0116-S]
gi|392257699|gb|EIV83148.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0810-R]
Length = 598
Score = 254 bits (649), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 158/404 (39%), Positives = 225/404 (55%), Gaps = 33/404 (8%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE--SLTNGPTKASKKTGYG 185
G E+ IQA T +L GSD+VG A+TG GKT AF +PIL LT+ T+A
Sbjct: 42 GYETPSAIQAATIPPLLAGSDVVGLAQTGTGKTAAFAIPILSKIDLTSKDTQA------- 94
Query: 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGT 244
LVL PTRELA QV E F YG + L +YGG Y Q LK+G VV+GT
Sbjct: 95 -----LVLAPTRELALQVAEAFGRYGAHMPKLNVLPIYGGQSYVVQLAGLKRGAQVVVGT 149
Query: 245 PGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304
PGR+ DH+ERG +DLS L + VLDEADEML MGF EDVE IL + +V LFSAT+
Sbjct: 150 PGRVIDHLERGTLDLSHLDYLVLDEADEMLTMGFAEDVERILADTPEYKQVA--LFSATM 207
Query: 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
P+ ++ ++ K+L +++ + K + N+ + + + + I+ +
Sbjct: 208 PTTIRRLTKKYLHD---PVEIKIDAKTSTAENITQRFIQVAGPRKMDALTRILEVETFEA 264
Query: 365 RTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
I+F TK++ ++AD L A A++GDI QSQRE T+ ++G LVAT+VAA
Sbjct: 265 -MIVFVRTKQATEEVADKLKARGFAAAAINGDINQSQRERTINALKAGTIDILVATDVAA 323
Query: 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGV 479
RGLD+ + ++ + P D E+Y+HR GRTGRAG +G AV+ PR+ + K IE+ +G
Sbjct: 324 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTAVLFVSPRERHLLKAIEKTTGA 383
Query: 480 KFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELL 523
K P D+ A+ +T+ D++ A + EL
Sbjct: 384 KLAEEPLPSVEDV-------NAQRVTKFRDAITAALAAPEVELF 420
>gi|308177940|ref|YP_003917346.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
gi|307745403|emb|CBT76375.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
Re117]
Length = 538
Score = 254 bits (649), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 144/358 (40%), Positives = 209/358 (58%), Gaps = 12/358 (3%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE FPIQA+T + L G+D++G+A+TG GKTL F +P L+ + K +
Sbjct: 41 LSEAGIEYPFPIQALTLPVALGGNDIIGQAKTGTGKTLGFGIPALQRVVREGDKGYEDLE 100
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
+ AP L++ PTRELA QV D ++ +YGG PY Q LK G DV++G
Sbjct: 101 FPGAPQALIVAPTRELAIQVGADLAQASKHSNISITTIYGGRPYEEQINALKAGTDVIVG 160
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D + ++L +K VLDEADEML +GF+ DVE IL + Q +LFSAT
Sbjct: 161 TPGRLIDLNRQRVLNLKQVKTVVLDEADEMLDLGFLPDVERILAALPPVR--QAMLFSAT 218
Query: 304 LPSWVKHISTKFL-KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
+P V ++ +++ + G++ N+R ++ + + +++ +++
Sbjct: 219 MPGAVITMARRYMTRPTHIRAQDPGDDDSLTKRNIRQLIYRAHNMDKDEMVARLLQAEGR 278
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G+TIIFT+TK SA++L+D L A +LHGD+ Q RE L FRSGK LVAT+V
Sbjct: 279 -GKTIIFTQTKRSAARLSDELIDRGFNAGSLHGDLGQGAREQALKAFRSGKVEILVATDV 337
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PRKSSVSK 472
AARG+D++DV ++ + P D Y+HR GRTGRAGNTG AV D PR S ++K
Sbjct: 338 AARGIDVDDVTHVVNLQCPDDENTYLHRVGRTGRAGNTGTAVTFVDWDSVPRWSLINK 395
>gi|119357571|ref|YP_912215.1| DEAD/DEAH box helicase [Chlorobium phaeobacteroides DSM 266]
gi|119354920|gb|ABL65791.1| ATP-dependent RNA helicase CsdA [Chlorobium phaeobacteroides DSM
266]
Length = 589
Score = 254 bits (649), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 151/375 (40%), Positives = 215/375 (57%), Gaps = 22/375 (5%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
PL + L+ G E+ PIQA T ++L+G DL+G+A+TG GKT AF LPIL ++T
Sbjct: 19 PLMKALEEVGYENPTPIQAQTIPLLLEGRDLLGQAQTGTGKTAAFALPILSNITIA---- 74
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKG 237
R P LVL PTRELA QV E F Y + G +YGG Y Q LK+G
Sbjct: 75 ------RREPQALVLAPTRELAIQVAEAFHRYAEYLKGFHVLPIYGGQDYGIQLRMLKQG 128
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
+ VV+GTPGR+ DH+ RG+++L L+ VLDEADEMLRMGF++DVE IL + +V
Sbjct: 129 VHVVVGTPGRVMDHMRRGSLNLDGLQCLVLDEADEMLRMGFIDDVEWILDQTPKGRQVA- 187
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSATLP ++ I+ K+L + ++ K +R S + V+ I+
Sbjct: 188 -LFSATLPVPIRRIAQKYLNNPA---EITIQNKTTTVEAIRQRYWIVGGSHKLDVLTRIL 243
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
G +IF TK +LA+ L A AL+GD+ Q+ RE T+ +SG +
Sbjct: 244 EVEPFDG-ILIFVRTKTMTLELAEKLQARGYDASALNGDMAQNMRERTVEQLKSGALNIV 302
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSK 472
+AT+VAARGLD++ + +I + P D E+Y+HR GRTGRAG +G A++ PR K+ +
Sbjct: 303 IATDVAARGLDVDRISHVINYDIPSDTESYVHRIGRTGRAGRSGEAILFVSPREKNMLYA 362
Query: 473 IERESGVKFEHISAP 487
IE+ + + E + P
Sbjct: 363 IEKATRKRIELMELP 377
>gi|227497408|ref|ZP_03927640.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
gi|226833084|gb|EEH65467.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
Length = 557
Score = 254 bits (649), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 155/370 (41%), Positives = 220/370 (59%), Gaps = 17/370 (4%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLT 172
F + + + L KGI FPIQA+T + LDG D++G+A+TG GKTL F +P+L ++L
Sbjct: 65 FGVEPEISQALADKGIIHPFPIQALTLPVALDGRDVIGQAKTGTGKTLGFGIPLLMDTLG 124
Query: 173 NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF 232
G + G +P LV+LPTRELAKQV + + +YGG Y Q
Sbjct: 125 PGEEGWDEDPASG-SPQALVVLPTRELAKQVATELAQAAAKRTVRIVQVYGGRAYEPQIE 183
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L+KG +VV+GTPGR+ D +ERG + L + VLDEADEML +GF+ DVE IL +
Sbjct: 184 ALEKGAEVVVGTPGRLIDLMERGVLSLEHVTTVVLDEADEMLDLGFLPDVEKILARTRPD 243
Query: 293 NKVQTLLFSATLPSWVKHISTKFL-KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
QT+LFSAT+P V ++ +++ K G+E M T+V+ +V + + +
Sbjct: 244 R--QTMLFSATMPGAVVALARRYMSKPTHIRAQDPGDESMTV-TSVKQVVYRTHALNKVE 300
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGDIQQSQREVTLAGFR 406
V+ I++ G RTIIFT TK +A+++A+ L G+R ALHGD+ Q RE L FR
Sbjct: 301 VVSRILQARGRG-RTIIFTRTKRTAARVAEDL-GSRGFATAALHGDLGQGAREQALRAFR 358
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD-- 464
GK LVAT+VAARG+D++DV +I + P D + Y+HR GRTGRAG++G AV D
Sbjct: 359 HGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGHSGTAVTFVDWD 418
Query: 465 --PRKSSVSK 472
PR ++K
Sbjct: 419 DVPRWRLIAK 428
>gi|389755594|ref|ZP_10191274.1| DNA/RNA helicase [Rhodanobacter sp. 115]
gi|388432201|gb|EIL89216.1| DNA/RNA helicase [Rhodanobacter sp. 115]
Length = 596
Score = 254 bits (649), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 151/370 (40%), Positives = 210/370 (56%), Gaps = 22/370 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G ES PIQA T +L+G D++G+A+TG GKT AF LPIL + P K
Sbjct: 4 LTDVGYESPSPIQAATIPPLLEGRDVLGQAQTGTGKTAAFALPILSRIDLKPGK------ 57
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P LVL PTRELA QV E F Y + GL +YGG Y Q L++G+ VV+
Sbjct: 58 ----PQALVLAPTRELAIQVAEAFQRYAAHMPGLQVLPIYGGQSYGPQLHALRRGVQVVV 113
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+++G +DLS LK+ VLDEADEMLRMGF++DVE +L +V LFSA
Sbjct: 114 GTPGRVIDHLDKGTLDLSELKYLVLDEADEMLRMGFIDDVEKVLQATPPERQVA--LFSA 171
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ I+ K LK +++ + N+R S + + I+
Sbjct: 172 TMPTVIRKIAQKHLKD---PVEITIKAATTTAANIRQRYWFVSGLHKLDAMTRILEAEPF 228
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
IIF TK++ +LA+ L A A++GDI Q QRE + + GK LVAT+V
Sbjct: 229 DA-MIIFARTKQATEELAEKLSARGLAAAAINGDIAQPQRERVIQQLKDGKLDILVATDV 287
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERES 477
AARGLD+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR K + IER +
Sbjct: 288 AARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVTPREKGMLHAIERAT 347
Query: 478 GVKFEHISAP 487
+ E + P
Sbjct: 348 RQRIEEMKLP 357
>gi|145222813|ref|YP_001133491.1| DEAD/DEAH box helicase [Mycobacterium gilvum PYR-GCK]
gi|145215299|gb|ABP44703.1| ATP-dependent RNA helicase CsdA [Mycobacterium gilvum PYR-GCK]
Length = 559
Score = 254 bits (649), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 161/418 (38%), Positives = 231/418 (55%), Gaps = 23/418 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES PIQA T +L+GSD+VG A+TG GKT AF +PIL SK R
Sbjct: 32 GYESPSPIQAATIPAILEGSDVVGLAQTGTGKTAAFAIPIL----------SKIDTDSRN 81
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGR 247
LVL PTRELA QV E F YG + + +YGG+ Y Q LK+G VV+GTPGR
Sbjct: 82 TQALVLAPTRELALQVAEAFGRYGAQLRVNVLPIYGGSSYVPQLAGLKRGAQVVVGTPGR 141
Query: 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSW 307
+ DH+E+G++DLS L + VLDEADEML+MGF EDVE IL + +V LFSAT+P
Sbjct: 142 VIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYKQVA--LFSATMPPA 199
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTI 367
+K I+ K+L +++ K + + N+ S + + ++ G I
Sbjct: 200 IKKITAKYLHD---PVEVTVKSKTQTAENITQRYFLVSYPRKMDALTRLLET-EQGDAMI 255
Query: 368 IFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423
+F TK++ ++A+ L A A++GDI Q+ RE T+A + G LVAT+VAARGL
Sbjct: 256 VFVRTKQATEEVAEKLRARGFAASAINGDIPQAVRERTIAQLKDGTIDILVATDVAARGL 315
Query: 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFE 482
D+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR + + IER + K
Sbjct: 316 DVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLGAIERVTRQKLV 375
Query: 483 HISAPQPADIAKAAGVEAAETITQVSDSV-IPAFKSAAEELLNNSGLSAAELLAKALA 539
P D+ + + ++IT D I F++ E + + A+ +A ALA
Sbjct: 376 ESELPSVDDVNEKRVAKFRDSITDALDKPGIDLFRTLVEGYERDHDVPMAD-IAAALA 432
>gi|375093701|ref|ZP_09739966.1| DNA/RNA helicase, superfamily II [Saccharomonospora marina XMU15]
gi|374654434|gb|EHR49267.1| DNA/RNA helicase, superfamily II [Saccharomonospora marina XMU15]
Length = 635
Score = 254 bits (649), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 149/348 (42%), Positives = 207/348 (59%), Gaps = 23/348 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L + GIE F IQA+T + L G DL+G+ARTG GKTL F +P+L+ LT G
Sbjct: 129 LSAAGIERTFAIQALTLPLALAGEDLIGQARTGMGKTLGFGVPVLQRLT--------LPG 180
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
G P LV++PTREL QV D +G+ + +YGG PY +Q L+KG+D+VIG
Sbjct: 181 DG-TPQALVVVPTRELCLQVTHDLTDAAKHLGVRTTAIYGGRPYESQIEALRKGVDLVIG 239
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D E+ ++ L +K VLDEADEML +GF+ D+E IL V + + QT+LFSAT
Sbjct: 240 TPGRLLDLAEQRHLVLGKVKALVLDEADEMLDLGFLPDIERILRMVPE--QRQTMLFSAT 297
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKAST---NVRHIVLPCSSSARSQVIPDIIRCY 360
+P + ++ FL+ + E+ A R V S + +++ +++
Sbjct: 298 MPGPIITLARTFLRQPTH----IRAEETDAGAIHERTRQFVYRSHSLDKPELVAKVLQA- 352
Query: 361 SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
G T+IFT TK +A ++AD L A A+HGD+ Q RE L FRSGK LVAT
Sbjct: 353 DGRGLTMIFTRTKRTAQKVADDLAERGFAAAAVHGDLGQGAREQALRAFRSGKIDVLVAT 412
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
+VAARG+D++DV +I + P D + Y+HR GRTGRAG TGVA+ L D
Sbjct: 413 DVAARGIDVDDVTHVINYQTPDDEKTYVHRIGRTGRAGKTGVAITLVD 460
>gi|383828834|ref|ZP_09983923.1| DNA/RNA helicase, superfamily II [Saccharomonospora xinjiangensis
XJ-54]
gi|383461487|gb|EID53577.1| DNA/RNA helicase, superfamily II [Saccharomonospora xinjiangensis
XJ-54]
Length = 545
Score = 254 bits (649), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 148/345 (42%), Positives = 205/345 (59%), Gaps = 17/345 (4%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L + GIE F IQA+T + L G D++G+ARTG GKTL F +P+L+ L G
Sbjct: 28 LDASGIERAFDIQALTLPIALSGEDVIGQARTGTGKTLGFGVPLLQRLA--------LPG 79
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
G P LV++PTREL QV +D G +G+ +YGG PY +Q L+ G+DVVIG
Sbjct: 80 DG-TPQALVVVPTRELCVQVSQDLQKAGKHLGVRIASIYGGRPYESQIKSLRDGVDVVIG 138
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D E+ ++ LS + VLDEADEML +GF+ D+E IL V + K QT+LFSAT
Sbjct: 139 TPGRLLDLAEQRHLVLSKVATLVLDEADEMLDLGFLPDIERILRMVPE--KRQTMLFSAT 196
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P + ++ FL+ I +E V S + +++ +++ S
Sbjct: 197 MPGPILTLARTFLRQPTH-IRAEDHEASAVHERTTQFVYRSHSLDKPELVAKVLQAESR- 254
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
G T+IFT TK +A ++AD L A A+HGD+ Q RE L FRSGK LVAT+VA
Sbjct: 255 GLTMIFTRTKRTAQKVADDLTERGFAAAAVHGDLGQGAREQALRAFRSGKVDVLVATDVA 314
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
ARG+D++DV ++ + P D + Y+HR GRTGRAG TGVA+ L D
Sbjct: 315 ARGIDVDDVTHVVNYQTPEDEKTYVHRIGRTGRAGKTGVAITLVD 359
>gi|87302313|ref|ZP_01085138.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701]
gi|87283238|gb|EAQ75194.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701]
Length = 645
Score = 254 bits (649), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 152/369 (41%), Positives = 220/369 (59%), Gaps = 24/369 (6%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQ ++ G DLVG+A+TG GKT AF LP+L L P + R P VLVL
Sbjct: 110 PIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLLARLD--PQQ--------RTPQVLVL 159
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCC-LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI 252
PTRELA QV E F+ Y + +YGGA + Q +LK+G+ +V+GTPGR+ DH+
Sbjct: 160 TPTRELALQVAEAFNGYAAKLPQVRVLPIYGGADFRDQIVRLKRGVQIVVGTPGRVMDHM 219
Query: 253 ERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 312
+G +DLS L+ VLDEADEMLRMGF++DVE +L ++ + Q +LFSAT+PS ++ +S
Sbjct: 220 RQGTLDLSGLRCLVLDEADEMLRMGFIDDVEWVLEQL--PQQRQVVLFSATMPSEIRRLS 277
Query: 313 TKFLKSDKK-TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTE 371
K+L++ + TI G E ++ RH+V+ + + + + ++ SS G IIF
Sbjct: 278 RKYLQNPAEVTIQQKGAE--NSTIRQRHLVV--HGAQKLEALTRVLEAESSEG-VIIFAR 332
Query: 372 TKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIND 427
TK +++ L L+GD+ Q+QRE T+ RSG+ LVAT+VAARGLD++
Sbjct: 333 TKAITLTVSEALEQQGYDVAVLNGDVPQNQRERTVERLRSGQVNVLVATDVAARGLDVDR 392
Query: 428 VQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISA 486
+ L+I + P D EAY+HR GRTGRAG G A++ PR + + +ER G +
Sbjct: 393 ITLVINYDIPFDSEAYVHRIGRTGRAGRQGDAILFLTPRERRFLGGLERAVGKAITPMEV 452
Query: 487 PQPADIAKA 495
P ADI ++
Sbjct: 453 PTNADINQS 461
>gi|403738909|ref|ZP_10951510.1| putative DEAD-box RNA helicase [Austwickia chelonae NBRC 105200]
gi|403191559|dbj|GAB78280.1| putative DEAD-box RNA helicase [Austwickia chelonae NBRC 105200]
Length = 513
Score = 254 bits (649), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 141/367 (38%), Positives = 212/367 (57%), Gaps = 11/367 (2%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F I + + L GI + FPIQAMT + L G D++G+A+TG GKTL F +P+L +
Sbjct: 37 FGIHPEIADALAEHGIVAPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGVPLLNKVVA 96
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
Y P LV++PTRELA QV D G G+ C+YGG + Q
Sbjct: 97 PQDPGYADLDYPNRPQALVVVPTRELAVQVAADLTRAGKRRGIRVECIYGGRAFEPQITA 156
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L +G++VV+GTPGR+ D ++ +++L S++ VLDEADEML +GF+ DVE ILG E
Sbjct: 157 LTRGVEVVVGTPGRLIDLNQQRHLNLHSIRTVVLDEADEMLDLGFLPDVERILG--ETPT 214
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
QT+LFSAT+P V ++ +++ + + + + + +++++
Sbjct: 215 SRQTMLFSATMPGAVVALARRYMTQPTHIRAMTTGDDSHTVQAIEQFIYRAHAMDKTEML 274
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409
I++ G TI+FT TK +A+++AD L A +LHGD+ Q RE + FR GK
Sbjct: 275 SRILQAKGR-GLTIVFTRTKRTAAKVADELTDRGFAAASLHGDLGQGAREQAMRAFRKGK 333
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----P 465
LVAT+VAARG+D+ +V ++ + P D + Y+HR+GRTGRAG TG+A+ L D P
Sbjct: 334 VDVLVATDVAARGIDVENVTHVVNYQCPEDEKTYLHRTGRTGRAGQTGIAITLVDWDDFP 393
Query: 466 RKSSVSK 472
R S ++K
Sbjct: 394 RWSLINK 400
>gi|381164531|ref|ZP_09873761.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea NA-128]
gi|379256436|gb|EHY90362.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea NA-128]
Length = 538
Score = 254 bits (649), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 147/345 (42%), Positives = 205/345 (59%), Gaps = 17/345 (4%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L + GIE F IQA+T + L G D++G+ARTG GKTL F +P+L+ L G
Sbjct: 21 LDASGIERTFDIQALTLPLALSGDDVIGQARTGTGKTLGFGVPLLQRLA--------LPG 72
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
G P LV++PTREL QV +D + G +G+ +YGG PY +Q L+ G+DVVIG
Sbjct: 73 DG-TPQALVVVPTRELCVQVSQDLENAGKHLGVRIASIYGGRPYESQIKSLRDGVDVVIG 131
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D E+ ++ L + VLDEADEML +GF+ D+E IL V + + QT+LFSAT
Sbjct: 132 TPGRLLDLAEQRHLVLGKVATLVLDEADEMLDLGFLPDIERILRMVPE--QRQTMLFSAT 189
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P + ++ FL+ I NE V S + +++ +++ +
Sbjct: 190 MPGPILTLARTFLRQPTH-IRAEDNEAGAVHERTTQFVYRSHSLDKPELVAKVLQAENR- 247
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
G T+IFT TK +A ++AD L A A+HGD+ Q RE L FRSGK LVAT+VA
Sbjct: 248 GLTMIFTRTKRTAQKVADDLTERGFAAAAVHGDLGQGAREQALRAFRSGKVDVLVATDVA 307
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
ARG+D++DV +I + P D + Y+HR GRTGRAG TGVA+ L D
Sbjct: 308 ARGIDVDDVTHVINYQTPEDEKTYVHRIGRTGRAGKTGVAITLVD 352
>gi|317124106|ref|YP_004098218.1| ATP-dependent RNA helicase CsdA [Intrasporangium calvum DSM 43043]
gi|315588194|gb|ADU47491.1| ATP-dependent RNA helicase CsdA [Intrasporangium calvum DSM 43043]
Length = 605
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 158/371 (42%), Positives = 212/371 (57%), Gaps = 22/371 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E PIQA T +L+G D+VG A+TG GKT AF LPIL L +KT
Sbjct: 45 GYEHPSPIQAATIPAMLEGRDVVGLAQTGTGKTAAFALPILARL-----DLKQKT----- 94
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV E F+ Y + G+ +YGG Y Q L++G+ VV+GTPG
Sbjct: 95 PQALVLAPTRELALQVCEAFERYAANLRGVHVLPVYGGQGYGVQLSALRRGVHVVVGTPG 154
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
RI DH+E+G +DLS L+F VLDEADEML+MGF EDVE IL A+K Q LFSAT+P+
Sbjct: 155 RIMDHLEKGTLDLSELRFLVLDEADEMLKMGFAEDVETILADTP-ADK-QVALFSATMPA 212
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ IS + L +++ K + N+ L S + + I+ + G
Sbjct: 213 QIRRISKQHLTD---PVEITVKAKTTTAPNITQRYLIVSYPQKVDALTRILEVENFEG-M 268
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK LA+ L A A++GDI Q+QRE T+ RSGK LVAT+VAARG
Sbjct: 269 IVFVRTKNETETLAEKLRARGFSAAAINGDIVQAQRERTVDQLRSGKLDILVATDVAARG 328
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKF 481
LD+ + ++ + P D E+Y+HR GRTGRAG +G A+ PR+ + K IE+ +
Sbjct: 329 LDVERISHVVNFDIPTDTESYVHRIGRTGRAGRSGDAISFVTPRERHLLKAIEKATRQGL 388
Query: 482 EHISAPQPADI 492
+ P DI
Sbjct: 389 TEMRPPTVEDI 399
>gi|309810396|ref|ZP_07704230.1| DEAD-box ATP-dependent RNA helicase CshA [Dermacoccus sp. Ellin185]
gi|308435636|gb|EFP59434.1| DEAD-box ATP-dependent RNA helicase CshA [Dermacoccus sp. Ellin185]
Length = 537
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 151/359 (42%), Positives = 216/359 (60%), Gaps = 13/359 (3%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F I + L+ KGI FPIQAMT + L G D++G+ARTG GKTL F +P+L +T
Sbjct: 37 FGIHPDIVAALEEKGIVHPFPIQAMTLPVALSGHDIIGQARTGTGKTLGFGVPLLSRVTA 96
Query: 174 -GPT-KASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
G T KA+ G+ P +V++PTRELA QV D + G+ +YGG + Q
Sbjct: 97 PGETSKAAVPAPEGK-PQAMVVVPTRELAVQVASDLEAAAKKRGIRIAQIYGGRAFEPQV 155
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
+L+KG++V++GTPGRI D RG++DL+ + VLDEADEML +GF+ DVE IL
Sbjct: 156 ERLEKGVEVIVGTPGRIIDLATRGHLDLAYVGCLVLDEADEMLDLGFLPDVEKILAMTPG 215
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSSSAR 349
QT+LFSAT+P V ++ +++ + I + ++ +A T N+ V + +
Sbjct: 216 GR--QTMLFSATMPGAVVTLARRYM-TQPTHIRAMQDDASEAETASNIEQFVYRAHAMDK 272
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGF 405
+++ I++ G TIIF+ TK +A++++D L A LHGD+ Q RE L F
Sbjct: 273 VEMLARILQAKDR-GLTIIFSRTKRTAAKVSDELISRGFAAAPLHGDLGQGAREQALRAF 331
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
RSGK LVAT+VAARG+D+ DV +I + P D + Y+HR GRTGRAG TG+AV L D
Sbjct: 332 RSGKVDVLVATDVAARGIDVEDVTHVINYQCPEDEKTYVHRIGRTGRAGKTGIAVTLVD 390
>gi|375292598|ref|YP_005127137.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
INCA 402]
gi|371582269|gb|AEX45935.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
INCA 402]
Length = 436
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 147/352 (41%), Positives = 209/352 (59%), Gaps = 16/352 (4%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+ + L + G++ F IQ +T + LDG DL+G+ARTG GKT F +P+++ + + A+
Sbjct: 19 ITDALATVGVKRTFAIQELTLPIALDGRDLIGQARTGMGKTYGFGVPLIDRVFD----AA 74
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
P LV++PTRELA QV +D + + +T +YGG PY Q +L+ G+D
Sbjct: 75 DVAELDGTPRALVVVPTRELAHQVGDDLKLLSRNIPITVATIYGGRPYEEQIAQLESGVD 134
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+GTPGR+ D +RGN+ L + VLDEADEML +GF D+E +L + + QT+L
Sbjct: 135 VVVGTPGRLIDLYQRGNLALDHVAVLVLDEADEMLDLGFFPDIEKLLAALTHPH--QTML 192
Query: 300 FSATLPSWVKHISTKFLKSDKKT-IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
FSAT+P V ++ F+ + G + AST I+ +S V +++
Sbjct: 193 FSATMPGAVVTLARTFMHQPVHIRAEDTGAAQTHASTT--QIIFQAHRMDKSAVTARVLQ 250
Query: 359 CYSSGGRTIIFTETKESASQLADLLP--GAR--ALHGDIQQSQREVTLAGFRSGKFMTLV 414
G+TIIF TK +A++LAD L G R +HGD+ QS RE +L FR+GK LV
Sbjct: 251 AEGR-GKTIIFARTKRTAAELADDLAQRGFRVAGVHGDLGQSAREASLDAFRTGKAHILV 309
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML--YD 464
AT+VAARGLDI+DV +I + P D Y+HR GRTGRAG+TG AV L YD
Sbjct: 310 ATDVAARGLDIDDVTHVINYQTPDDPMTYVHRIGRTGRAGHTGTAVTLVGYD 361
>gi|375290383|ref|YP_005124923.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
241]
gi|376245216|ref|YP_005135455.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
HC01]
gi|376250808|ref|YP_005137689.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
HC03]
gi|376292769|ref|YP_005164443.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
HC02]
gi|371580054|gb|AEX43721.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
241]
gi|372107846|gb|AEX73907.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
HC01]
gi|372110092|gb|AEX76152.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
HC02]
gi|372112312|gb|AEX78371.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
HC03]
Length = 436
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 147/352 (41%), Positives = 209/352 (59%), Gaps = 16/352 (4%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+ + L + G++ F IQ +T + LDG DL+G+ARTG GKT F +P+++ + + A+
Sbjct: 19 ITDALATVGVKRTFAIQELTLPIALDGRDLIGQARTGMGKTYGFGVPLIDRVFD----AA 74
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
P LV++PTRELA QV +D + + +T +YGG PY Q +L+ G+D
Sbjct: 75 DVAELDGTPRALVVVPTRELAHQVGDDLKLLSRNIPITVATIYGGRPYEEQIAQLESGVD 134
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+GTPGR+ D +RGN+ L + VLDEADEML +GF D+E +L + + QT+L
Sbjct: 135 VVVGTPGRLIDLYQRGNLALDHVAVLVLDEADEMLDLGFFPDIEKLLAALTHPH--QTML 192
Query: 300 FSATLPSWVKHISTKFLKSDKKT-IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
FSAT+P V ++ F+ + G + AST I+ +S V +++
Sbjct: 193 FSATMPGAVVTLARTFMHQPVHIRAEDTGAAQTHASTT--QIIFQAHRMDKSAVTARVLQ 250
Query: 359 CYSSGGRTIIFTETKESASQLADLLP--GAR--ALHGDIQQSQREVTLAGFRSGKFMTLV 414
G+TIIF TK +A++LAD L G R +HGD+ QS RE +L FR+GK LV
Sbjct: 251 AEGR-GKTIIFARTKRTAAELADDLAQRGFRVAGVHGDLGQSAREASLDAFRTGKAHILV 309
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML--YD 464
AT+VAARGLDI+DV +I + P D Y+HR GRTGRAG+TG AV L YD
Sbjct: 310 ATDVAARGLDIDDVTHVINYQTPDDPMTYVHRIGRTGRAGHTGTAVTLVGYD 361
>gi|376247986|ref|YP_005139930.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
HC04]
gi|376256619|ref|YP_005144510.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
VA01]
gi|376287203|ref|YP_005159769.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
BH8]
gi|371584537|gb|AEX48202.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
BH8]
gi|372114554|gb|AEX80612.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
HC04]
gi|372119136|gb|AEX82870.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
VA01]
Length = 436
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 147/352 (41%), Positives = 209/352 (59%), Gaps = 16/352 (4%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+ + L + G++ F IQ +T + LDG DL+G+ARTG GKT F +P+++ + + A+
Sbjct: 19 ITDALATVGVKRTFAIQELTLPIALDGRDLIGQARTGMGKTYGFGVPLIDRVFD----AA 74
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
P LV++PTRELA QV +D + + +T +YGG PY Q +L+ G+D
Sbjct: 75 DVAELDGTPRALVVVPTRELAHQVGDDLKLLSRNIPITVATIYGGRPYEEQIAQLESGVD 134
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+GTPGR+ D +RGN+ L + VLDEADEML +GF D+E +L + + QT+L
Sbjct: 135 VVVGTPGRLIDLYQRGNLALDHVAVLVLDEADEMLDLGFFPDIEKLLAALTHPH--QTML 192
Query: 300 FSATLPSWVKHISTKFLKSDKKT-IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
FSAT+P V ++ F+ + G + AST I+ +S V +++
Sbjct: 193 FSATMPGAVVTLARTFMHQPVHIRAEDTGAAQTHASTT--QIIFQAHRMDKSAVTARVLQ 250
Query: 359 CYSSGGRTIIFTETKESASQLADLLP--GAR--ALHGDIQQSQREVTLAGFRSGKFMTLV 414
G+TIIF TK +A++LAD L G R +HGD+ QS RE +L FR+GK LV
Sbjct: 251 AEGR-GKTIIFARTKRTAAELADDLAQRGFRVAGVHGDLGQSAREASLDAFRTGKAHILV 309
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML--YD 464
AT+VAARGLDI+DV +I + P D Y+HR GRTGRAG+TG AV L YD
Sbjct: 310 ATDVAARGLDIDDVTHVINYQTPDDPMTYVHRIGRTGRAGHTGTAVTLVGYD 361
>gi|397678974|ref|YP_006520509.1| cold-shock DEAD box protein A-like protein [Mycobacterium
massiliense str. GO 06]
gi|418249081|ref|ZP_12875403.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
47J26]
gi|419711589|ref|ZP_14239052.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
M93]
gi|420930546|ref|ZP_15393822.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-151-0930]
gi|420936028|ref|ZP_15399297.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-152-0914]
gi|420940798|ref|ZP_15404060.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-153-0915]
gi|420946105|ref|ZP_15409358.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-154-0310]
gi|420951063|ref|ZP_15414309.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0626]
gi|420955234|ref|ZP_15418473.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0107]
gi|420960958|ref|ZP_15424186.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-1231]
gi|420991202|ref|ZP_15454354.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0307]
gi|420997038|ref|ZP_15460178.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0912-R]
gi|421001472|ref|ZP_15464602.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0912-S]
gi|353450736|gb|EHB99130.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
47J26]
gi|382938911|gb|EIC63240.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
M93]
gi|392139564|gb|EIU65296.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-151-0930]
gi|392141543|gb|EIU67268.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-152-0914]
gi|392151585|gb|EIU77293.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-153-0915]
gi|392159313|gb|EIU85009.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-154-0310]
gi|392160840|gb|EIU86531.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0626]
gi|392189282|gb|EIV14916.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0912-R]
gi|392190213|gb|EIV15845.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0307]
gi|392200290|gb|EIV25896.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0912-S]
gi|392254023|gb|EIV79490.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-1231]
gi|392255762|gb|EIV81223.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0107]
gi|395457239|gb|AFN62902.1| Cold-shock DEAD box protein A-like protein [Mycobacterium
massiliense str. GO 06]
Length = 598
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 158/404 (39%), Positives = 225/404 (55%), Gaps = 33/404 (8%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE--SLTNGPTKASKKTGYG 185
G E+ IQA T +L GSD+VG A+TG GKT AF +PIL LT+ T+A
Sbjct: 42 GYETPSAIQAATIPPLLAGSDVVGLAQTGTGKTAAFAIPILSKIDLTSKDTQA------- 94
Query: 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGT 244
LVL PTRELA QV E F YG + L +YGG Y Q LK+G VV+GT
Sbjct: 95 -----LVLAPTRELALQVAEAFGRYGAHMPKLNVLPIYGGQSYVVQLAGLKRGAQVVVGT 149
Query: 245 PGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304
PGR+ DH+ERG +DLS L + VLDEADEML MGF EDVE IL + +V LFSAT+
Sbjct: 150 PGRVIDHLERGTLDLSHLDYLVLDEADEMLTMGFAEDVERILADTPEYKQVA--LFSATM 207
Query: 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
P+ ++ ++ K+L +++ + K + N+ + + + + I+ +
Sbjct: 208 PTTIRRLTKKYLHD---PVEIKIDAKTSTAENITQRFIQVAGPRKMDALTRILEVETFEA 264
Query: 365 RTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
I+F TK++ ++AD L A A++GDI QSQRE T+ ++G LVAT+VAA
Sbjct: 265 -MIVFVRTKQATEEVADKLKARGFAAAAINGDINQSQRERTINALKAGTIDILVATDVAA 323
Query: 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGV 479
RGLD+ + ++ + P D E+Y+HR GRTGRAG +G AV+ PR+ + K IE+ +G
Sbjct: 324 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTAVLFVSPRERHLLKAIEKTTGA 383
Query: 480 KFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELL 523
K P D+ A+ +T+ D++ A + EL
Sbjct: 384 KLAEEPLPSVEDV-------NAQRVTKFRDAITAALAAPEVELF 420
>gi|329945971|ref|ZP_08293658.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
gi|328528419|gb|EGF55397.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
Length = 557
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 153/369 (41%), Positives = 221/369 (59%), Gaps = 15/369 (4%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLT 172
F + + E L +KGI FPIQA+T + L+G D++G+A+TG GKTL F +P+L ++L
Sbjct: 71 FGVEPEICEALAAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLMDTLG 130
Query: 173 NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF 232
G + G +P LV+LPTRELAKQV E+ + +YGG Y Q
Sbjct: 131 PGEEGWDEDPASG-SPQGLVILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAYEPQIE 189
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G +VV+GTPGR+ D ++RG +DL+ + VLDEADEML +GF+ DVE IL + A
Sbjct: 190 DLERGAEVVVGTPGRLIDLMDRGVLDLTHVTTVVLDEADEMLDLGFLPDVEKILARTR-A 248
Query: 293 NKVQTLLFSATLPSWVKHISTKFL-KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
++ T+LFSAT+P V ++ +++ + G+E M T V+ +V S + +
Sbjct: 249 DR-HTMLFSATMPGAVVTLARRYMTRPTHIRAQDPGDEGMTVQT-VQQVVYRTHSMNKVE 306
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407
V+ I++ GRTIIF TK +A+++AD L ALHGD+ Q RE L FR+
Sbjct: 307 VVARILQAEGR-GRTIIFARTKRTAARVADDLRARGFATAALHGDLGQGAREQALRAFRN 365
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD--- 464
K LVAT+VAARG+D++DV +I + P D + Y+HR GRTGRAGN+G AV D
Sbjct: 366 DKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFVDWDD 425
Query: 465 -PRKSSVSK 472
PR ++K
Sbjct: 426 VPRWRIIAK 434
>gi|38233323|ref|NP_939090.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae NCTC 13129]
gi|376242357|ref|YP_005133209.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
CDCE 8392]
gi|38199582|emb|CAE49235.1| Putative ATP-dependent RNA helicase [Corynebacterium diphtheriae]
gi|372105599|gb|AEX71661.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
CDCE 8392]
Length = 436
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 147/352 (41%), Positives = 209/352 (59%), Gaps = 16/352 (4%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+ + L + G++ F IQ +T + LDG DL+G+ARTG GKT F +P+++ + + A+
Sbjct: 19 ITDALATVGVKRTFAIQELTLPIALDGRDLIGQARTGMGKTYGFGVPLIDRVFD----AA 74
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
P LV++PTRELA QV +D + + +T +YGG PY Q +L+ G+D
Sbjct: 75 DVAELDGTPRALVVVPTRELAHQVGDDLKLLSRNIPITVATIYGGRPYEEQIAQLESGVD 134
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+GTPGR+ D +RGN+ L + VLDEADEML +GF D+E +L + + QT+L
Sbjct: 135 VVVGTPGRLIDLYQRGNLALDHVAVLVLDEADEMLDLGFFPDIEKLLAALTHPH--QTML 192
Query: 300 FSATLPSWVKHISTKFLKSDKKT-IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
FSAT+P V ++ F+ + G + AST ++ +S V I++
Sbjct: 193 FSATMPGAVVTLARTFMHHPVHIRAEDTGAAQTHASTT--QVIFQAHRMDKSAVTARILQ 250
Query: 359 CYSSGGRTIIFTETKESASQLADLLP--GAR--ALHGDIQQSQREVTLAGFRSGKFMTLV 414
G+TIIF TK +A++LAD L G R +HGD+ QS RE +L FR+GK LV
Sbjct: 251 AEGR-GKTIIFARTKRTAAELADDLAQRGFRVAGVHGDLGQSAREASLDAFRTGKAHILV 309
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML--YD 464
AT+VAARGLDI+DV +I + P D Y+HR GRTGRAG+TG AV L YD
Sbjct: 310 ATDVAARGLDIDDVTHVINYQTPDDPMTYVHRIGRTGRAGHTGTAVTLVGYD 361
>gi|237785892|ref|YP_002906597.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM
44385]
gi|237758804|gb|ACR18054.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM
44385]
Length = 823
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 156/409 (38%), Positives = 235/409 (57%), Gaps = 27/409 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
+K G E+ PIQA T ++ G D+VG A+TG GKT AF LPIL L ++ KK
Sbjct: 169 VKKVGFETPSPIQAATIPILAQGRDVVGLAQTGTGKTAAFALPILSRLD----RSQKK-- 222
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC-LYGGAPYHAQEFKLKKGIDVVI 242
P LVL PTRELA QV + F + +G +YGG Y Q L++G +V+
Sbjct: 223 ----PQALVLSPTRELALQVADAFQEFADHLGGVHVLPIYGGQSYGIQLSGLRRGAHIVV 278
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+ERG++DLS LK+ VLDEADEML MGF EDVE IL + QT LFSA
Sbjct: 279 GTPGRVIDHLERGSLDLSELKYLVLDEADEMLNMGFQEDVERILADTPEHK--QTALFSA 336
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ +S ++L+ D + + + + + + N+ L + + + I+
Sbjct: 337 TMPASIRRLSKQYLE-DPREVTI--KSQQRTADNIHQQYLLVNHHYKLDALTRILEVTEF 393
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
I+F TK++ +LA+ L A A++GD+ Q+QRE T+ R G+ LVAT+V
Sbjct: 394 DA-MIMFARTKQNTEELAEKLRARGFSAAAINGDMAQNQRERTVDQLRDGRLDILVATDV 452
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERES 477
AARGLD+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + + IER +
Sbjct: 453 AARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRSGEAILFVTPRERRLLRSIERAT 512
Query: 478 GVKFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFK----SAAEE 521
E + P ++ + + A++IT+ ++D + F+ S AEE
Sbjct: 513 KSSIEEMQLPTVDEVNETRKAKFAQSITESLADPQVDLFRGLINSYAEE 561
>gi|120405422|ref|YP_955251.1| DEAD/DEAH box helicase [Mycobacterium vanbaalenii PYR-1]
gi|119958240|gb|ABM15245.1| ATP-dependent RNA helicase CsdA [Mycobacterium vanbaalenii PYR-1]
Length = 564
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 150/370 (40%), Positives = 210/370 (56%), Gaps = 21/370 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +LDGSD+VG A+TG GKT AF +PIL SK R
Sbjct: 32 GYETPSPIQAATIPAILDGSDVVGLAQTGTGKTAAFAIPIL----------SKIDTDSRN 81
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGR 247
LVL PTRELA QV E F YG + + +YGGA Y Q LK+G VV+GTPGR
Sbjct: 82 TQALVLAPTRELALQVAEAFGRYGAHLRVNVLPIYGGASYVPQLSGLKRGAQVVVGTPGR 141
Query: 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSW 307
+ DH+E+G++DLS L + VLDEADEML+MGF EDVE IL + +V LFSAT+P
Sbjct: 142 VIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYKQVA--LFSATMPPA 199
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTI 367
+K I+ K+L +++ K + + N+ S + + ++ G I
Sbjct: 200 IKKITAKYLHD---PVEVTVKSKTQTAENITQRYFLVSYPRKMDALTRLLEV-EQGDAMI 255
Query: 368 IFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423
+F TK++ ++A+ L A A++GDI Q+ RE T++ + G LVAT+VAARGL
Sbjct: 256 VFVRTKQATEEVAEKLRSRGFAAAAINGDIPQAVRERTISQLKDGTIDILVATDVAARGL 315
Query: 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFE 482
D+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR + + IER + K
Sbjct: 316 DVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLGAIERVTRQKLV 375
Query: 483 HISAPQPADI 492
P D+
Sbjct: 376 ESELPSVEDV 385
>gi|46200197|ref|YP_005864.1| heat resistant RNA dependent ATPase [Thermus thermophilus HB27]
gi|46197825|gb|AAS82237.1| heat resistant RNA dependent ATPase [Thermus thermophilus HB27]
Length = 517
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 163/379 (43%), Positives = 223/379 (58%), Gaps = 22/379 (5%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L +G+ + PIQA + L+G DL+G+ARTG GKTLAF LPI E L P++
Sbjct: 21 EALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLA--PSQER-- 76
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
GR P LVL PTRELA QV + A L +YGG Y Q+ L +G D V
Sbjct: 77 ---GRKPRALVLTPTRELALQVASELTAV--APHLKVVAVYGGTGYGKQKEALLRGADAV 131
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
+ TPGR D++ +G +DLS ++ VLDEADEML MGF E+VE +L + QTLLFS
Sbjct: 132 VATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSR--QTLLFS 189
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
ATLPSW K ++ +++K + I+++ +E + +P R +V+ D++ +
Sbjct: 190 ATLPSWAKRLAERYMK-NPVLINVIKDEPVTYEEE----AVPAPVRGRLEVLSDLLYV-A 243
Query: 362 SGGRTIIFT----ETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
S R ++FT ET+E A L L A+ALHGD+ Q +RE L FR G+ LVAT+
Sbjct: 244 SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD 303
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERE 476
VAARGLDI V L++ P EAY HRSGRTGRAG G V+LY PR + V +ER
Sbjct: 304 VAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERA 363
Query: 477 SGVKFEHISAPQPADIAKA 495
G +F+ ++ P P ++ +A
Sbjct: 364 VGRRFKRVNPPTPEEVLEA 382
>gi|389806352|ref|ZP_10203483.1| DNA/RNA helicase [Rhodanobacter thiooxydans LCS2]
gi|388445572|gb|EIM01636.1| DNA/RNA helicase [Rhodanobacter thiooxydans LCS2]
Length = 643
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 148/370 (40%), Positives = 209/370 (56%), Gaps = 22/370 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G ES PIQA T +L+G D++G+A+TG GKT AF LPIL ++ +K G
Sbjct: 28 LADVGYESPSPIQAATIPPLLEGRDVLGQAQTGTGKTAAFALPIL-------SRIERKAG 80
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P LVL PTRELA QV E F Y + G +YGG Y Q LK+G+ VV+
Sbjct: 81 ---KPQALVLAPTRELAIQVAEAFQTYAAHLPGFQVLPIYGGQSYGPQLHSLKRGVHVVV 137
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+++G +DLS LK+ VLDEADEMLRMGF++DVE +L +V LFSA
Sbjct: 138 GTPGRVIDHLDKGTLDLSELKYLVLDEADEMLRMGFIDDVEKVLQATPPQRQV--ALFSA 195
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ I+ + LK +++ + N+ S + + I+
Sbjct: 196 TMPTQIRKIAQRHLKD---PVEVTIKSSTTTAANIHQRYWFVSGMHKLDALTRILEAEPF 252
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
IIF TK++ +LA+ L A A++GDI Q QRE + + GK LVAT+V
Sbjct: 253 DA-MIIFARTKQATEELAEKLQARGLAAAAINGDIAQPQRERVIQQLKDGKLDILVATDV 311
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERES 477
AARGLD+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR + + IER +
Sbjct: 312 AARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLGAIERAT 371
Query: 478 GVKFEHISAP 487
E + P
Sbjct: 372 RQPIEQMQLP 381
>gi|159903626|ref|YP_001550970.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9211]
gi|159888802|gb|ABX09016.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
MIT 9211]
Length = 604
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 152/380 (40%), Positives = 218/380 (57%), Gaps = 22/380 (5%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F S L L+SKG + PIQ F ++ G DL+G+A+TG GKT AF LPILE +
Sbjct: 57 FGFSDDLINTLESKGYKDPTPIQKAAFPELMLGRDLLGQAQTGTGKTAAFALPILERIKQ 116
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPYHAQEF 232
RAP VLVL PTRELA QV + F Y G + +YGG+ + AQ
Sbjct: 117 DT----------RAPQVLVLAPTRELAMQVADSFRAYAQGRPEVQVLAVYGGSDFRAQIN 166
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G+ +V+GTPGR+ DHI +G + L+ VLDEADEMLRMGF++D+E IL ++
Sbjct: 167 ALRRGVQIVVGTPGRVMDHIRQGTFIKTDLETLVLDEADEMLRMGFIDDIEWILEQL--P 224
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
K Q + FSAT+PS ++ +S ++L + I + +K R+IV+ +S + +
Sbjct: 225 AKRQMIFFSATMPSEIRRLSKQYL-HEPAEITIKAQKKEAQLIRQRYIVI--QNSFKLEA 281
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSG 408
+ ++ + G IIF TK +L++ L L+GD+ Q+ RE T+ R G
Sbjct: 282 LKRVLETTADEG-VIIFARTKAITLRLSESLEALNHNVAVLNGDVPQTLRERTIERLRQG 340
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-K 467
LVAT+VAARGLD+ + L+I + P D EAY+HR GRTGRAG TG A++ PR +
Sbjct: 341 GIDILVATDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAILFVSPRER 400
Query: 468 SSVSKIERESGVKFEHISAP 487
S ++ +ER G E + P
Sbjct: 401 SFINNLERAVGQSIEKMEIP 420
>gi|419860329|ref|ZP_14382974.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
bv. intermedius str. NCTC 5011]
gi|387983537|gb|EIK57014.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
bv. intermedius str. NCTC 5011]
Length = 436
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 146/352 (41%), Positives = 209/352 (59%), Gaps = 16/352 (4%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+ + L + G++ F IQ +T + LDG DL+G+ARTG GKT F +P+++ + + A+
Sbjct: 19 ITDALATVGVKRTFAIQELTLPIALDGRDLIGQARTGMGKTYGFGVPLIDRVFD----AA 74
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
P LV++PTRELA QV +D + + +T +YGG PY Q +L+ G+D
Sbjct: 75 DVAELDGTPRALVVVPTRELAHQVGDDLKLLSRNIPITVATIYGGRPYEEQIAQLESGVD 134
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+GTPGR+ D +RGN+ L + VLDEADEML +GF D+E +L + + QT+L
Sbjct: 135 VVVGTPGRLIDLYQRGNLALDHVAVLVLDEADEMLDLGFFPDIEKLLAALTHPH--QTML 192
Query: 300 FSATLPSWVKHISTKFLKSDKKT-IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
FSAT+P V ++ F+ + G + AST ++ +S V +++
Sbjct: 193 FSATMPGAVVTLARTFMHQPVHIRAEDTGAAQTHASTT--QVIFQAHRMDKSAVTARVLQ 250
Query: 359 CYSSGGRTIIFTETKESASQLADLLP--GAR--ALHGDIQQSQREVTLAGFRSGKFMTLV 414
G+TIIF TK +A++LAD L G R +HGD+ QS RE +L FR+GK LV
Sbjct: 251 AEGR-GKTIIFARTKRTAAELADDLAQRGFRVAGVHGDLGQSAREASLDAFRTGKAHILV 309
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML--YD 464
AT+VAARGLDI+DV +I + P D Y+HR GRTGRAG+TG AV L YD
Sbjct: 310 ATDVAARGLDIDDVTHVINYQTPDDPMTYVHRIGRTGRAGHTGTAVTLVGYD 361
>gi|119718818|ref|YP_925783.1| DEAD/DEAH box helicase [Nocardioides sp. JS614]
gi|119539479|gb|ABL84096.1| ATP-dependent RNA helicase CsdA [Nocardioides sp. JS614]
Length = 589
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 158/375 (42%), Positives = 209/375 (55%), Gaps = 22/375 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G E IQA T +L G D+VG A+TG GKT AF LPIL L T
Sbjct: 29 LADVGYEKPSAIQAATIPPLLAGRDVVGLAQTGTGKTAAFALPILSRLDLTQT------- 81
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P LVL PTRELA QV E F+ Y V G+ +YGG Y Q L++G+ VV+
Sbjct: 82 ---TPQALVLAPTRELALQVCEAFERYAAHVKGVHVLPVYGGQGYGVQLSALRRGVHVVV 138
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGRI DH+E+G +DLS L+F VLDEADEML MGF EDVE IL D V LFSA
Sbjct: 139 GTPGRIMDHLEKGTLDLSELRFLVLDEADEMLNMGFAEDVETILADTPDDKNVA--LFSA 196
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ IS K+L D I + G K ++N+ L S + + I+ +
Sbjct: 197 TMPAQIRRISKKYL-DDPAEITVKG--KTATASNITQRYLTVSYPQKVDALTRILEVENF 253
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G I+F TK LA+ L A A++GD+ Q+QRE T+ +SGK LVAT+V
Sbjct: 254 EG-MIVFVRTKNETETLAEKLRARGLSAMAINGDVAQAQRERTVNQLKSGKLDILVATDV 312
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERES 477
AARGLD+ + ++ + P D E+Y+HR GRTGRAG +G A+ PR+ + K IE+ +
Sbjct: 313 AARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAISFVTPRERYLLKHIEKAT 372
Query: 478 GVKFEHISAPQPADI 492
+ P D+
Sbjct: 373 RQPLTQMQLPTVEDV 387
>gi|117922031|ref|YP_871223.1| DEAD/DEAH box helicase [Shewanella sp. ANA-3]
gi|117614363|gb|ABK49817.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
Length = 619
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 156/421 (37%), Positives = 233/421 (55%), Gaps = 27/421 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G E+ PIQ+ + D ++ G D++G+A+TG GKT AF LP+L +T+
Sbjct: 21 LDELGYENPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTSQAV------- 73
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P +LVL PTRELA QV E F Y + G +YGG H Q LK+G V++
Sbjct: 74 ----PQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLNALKRGPQVIV 129
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+ RG + L +L+ VLDEADEML+MGF++D+E IL + Q LFSA
Sbjct: 130 GTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQR--QLALFSA 187
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P +K ++ K LK D I + + S R + + S + + + ++ ++
Sbjct: 188 TMPEQIKRVANKHLK-DATNISIAASHTTVDSIEQRFVQV--SQHNKLEALVRVLEVENT 244
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G IIF T+ S +LA+ L + LHGD+ Q RE + +SGK L+AT+V
Sbjct: 245 EG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKSGKLDILIATDV 303
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERES 477
AARGLD+ + ++ + P D EAY+HR GRTGRAG TG+A++ R+ + + IER +
Sbjct: 304 AARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERAT 363
Query: 478 GVKFEHISAPQPADIAK----AAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAEL 533
+ + P P +A+ G + A+T+TQ D + A ++L ++ L AA L
Sbjct: 364 NSRISPMKVPSPETVAERRLSRLGEQLAQTMTQDLDFMREAVAQLCQQLEVDTDLLAAAL 423
Query: 534 L 534
L
Sbjct: 424 L 424
>gi|421610904|ref|ZP_16052069.1| cold-shock deAd box protein a [Rhodopirellula baltica SH28]
gi|408498358|gb|EKK02852.1| cold-shock deAd box protein a [Rhodopirellula baltica SH28]
Length = 931
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 164/428 (38%), Positives = 239/428 (55%), Gaps = 24/428 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+++ + + G + PIQA +LDG D++ +++TG GKT AF LPIL S
Sbjct: 315 VQKAVAASGYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFALPIL----------S 364
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGI 238
+ R P VLVL PTRELA QV F YG + G +YGG Y Q +L++G+
Sbjct: 365 RVDVRSRRPQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRRGV 424
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
VV+GTPGR+ DH++RG +DL SL VLDEADEML MGF+EDV+ +L K + +V
Sbjct: 425 QVVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQV--A 482
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSATLP ++ I+ ++L +D I + K + +VR L S + + I+
Sbjct: 483 LFSATLPKPIRKIADEYL-NDPARITI--KSKTITAASVRQRALFVSPRDKIDALTRILE 539
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ G I+FT+TK+S +A+ L A AL+GD+ Q RE T+ + G+ LV
Sbjct: 540 VEETDG-VIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLV 598
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM-LYDPRKSSVSKI 473
AT+VAARGLD+ + + + P D E+Y+HR GRTGRAG +G A++ L + ++ + I
Sbjct: 599 ATDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQAIIFLTNAQRRQLRFI 658
Query: 474 ERESGVKFEHISAPQPADIAKAAGVEAAETITQVS-DSVIPAFKSAAEELLNNSGLSAAE 532
E + E I P ADI +A + IT VS D + +K + SG E
Sbjct: 659 ENTTKQPIEIIDIPTVADINEARVRRFKQRITDVSADQDLTVYKDMIAQYAEESG-KPME 717
Query: 533 LLAKALAK 540
++A ALA+
Sbjct: 718 MIAAALAE 725
>gi|293189188|ref|ZP_06607912.1| ATP-dependent RNA helicase DeaD, partial [Actinomyces odontolyticus
F0309]
gi|292821860|gb|EFF80795.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
Length = 502
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 147/384 (38%), Positives = 224/384 (58%), Gaps = 21/384 (5%)
Query: 102 RGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTL 161
+GE + + F ++ P+ + L+ KGI FPIQA+T L+ D++G+A+TG GKTL
Sbjct: 56 KGEDLDEKSFADFGVTDPIVDALEDKGITHPFPIQALTLGPALERHDIIGQAKTGTGKTL 115
Query: 162 AFVLPILESLTNGPTKASKKTGY-----GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGL 216
F +P+LE + A + GY P L++LPTREL KQV +D +
Sbjct: 116 GFGIPVLEDVI-----APDEEGYEDLLNPNKPQALIILPTRELTKQVAQDLREAAKYLST 170
Query: 217 TSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM 276
+YGG + Q L++G D+V+GTPGR+ D + +G++ LS ++ VLDEADEML +
Sbjct: 171 RIVEIYGGVAFEPQIEALERGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDL 230
Query: 277 GFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN 336
GF+ DVE +L +V + N+ T+LFSAT+P V ++ +F+ +++ +
Sbjct: 231 GFLPDVETLLSRVPE-NR-HTMLFSATMPGPVVALARRFMVQPTHIRAQDPDDQNQTVNT 288
Query: 337 VRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGD 392
V+ ++ + + +V+ I++ G RT+IF TK +A++L + L +LHGD
Sbjct: 289 VKQVIYRVHAMNKVEVVARILQAEGRG-RTVIFCRTKRTAARLGEDLTARGFAVGSLHGD 347
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q RE L FR+GK LVAT+VAARG+D++DV +I + P D + YIHR GRTGR
Sbjct: 348 LGQGAREQALRAFRNGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGR 407
Query: 453 AGNTGVAVMLYD----PRKSSVSK 472
AGN+G AV D PR S +SK
Sbjct: 408 AGNSGTAVTFVDWDDTPRWSLISK 431
>gi|32475237|ref|NP_868231.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
gi|32445778|emb|CAD78509.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
Length = 931
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 164/428 (38%), Positives = 239/428 (55%), Gaps = 24/428 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+++ + + G + PIQA +LDG D++ +++TG GKT AF LPIL S
Sbjct: 315 VQKAVAASGYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFALPIL----------S 364
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGI 238
+ R P VLVL PTRELA QV F YG + G +YGG Y Q +L++G+
Sbjct: 365 RVDVRSRRPQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRRGV 424
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
VV+GTPGR+ DH++RG +DL SL VLDEADEML MGF+EDV+ +L K + +V
Sbjct: 425 QVVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQV--A 482
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSATLP ++ I+ ++L +D I + K + +VR L S + + I+
Sbjct: 483 LFSATLPKPIRKIADEYL-NDPARITI--KSKTITAASVRQRALFVSPRDKIDALTRILE 539
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ G I+FT+TK+S +A+ L A AL+GD+ Q RE T+ + G+ LV
Sbjct: 540 VEETDG-VIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLV 598
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM-LYDPRKSSVSKI 473
AT+VAARGLD+ + + + P D E+Y+HR GRTGRAG +G A++ L + ++ + I
Sbjct: 599 ATDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQAIIFLTNAQRRQLRFI 658
Query: 474 ERESGVKFEHISAPQPADIAKAAGVEAAETITQVS-DSVIPAFKSAAEELLNNSGLSAAE 532
E + E I P ADI +A + IT VS D + +K + SG E
Sbjct: 659 ENTTKQPIEIIDIPTVADINEARVRRFKQRITDVSADQDLTVYKDMIAQYAEESG-KPME 717
Query: 533 LLAKALAK 540
++A ALA+
Sbjct: 718 MIAAALAE 725
>gi|418051651|ref|ZP_12689735.1| DEAD/DEAH box helicase domain protein [Mycobacterium rhodesiae
JS60]
gi|353184343|gb|EHB49870.1| DEAD/DEAH box helicase domain protein [Mycobacterium rhodesiae
JS60]
Length = 565
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 155/421 (36%), Positives = 227/421 (53%), Gaps = 28/421 (6%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P + +I + + + G E+ IQA T +L GSD+VG A+TG GKT AF +PI
Sbjct: 8 PQTFADLQIHPAVLQAVADVGYETPSAIQAATIPALLAGSDVVGLAQTGTGKTAAFAIPI 67
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
L SK R LVL PTRELA QV E F YG + + +YGG+ Y
Sbjct: 68 L----------SKIDAESRNTQALVLAPTRELALQVAEAFSRYGAHLKINVLPIYGGSSY 117
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q LK+G +V+GTPGR+ DH+E+G++DLS L + VLDEADEML+MGF EDVE IL
Sbjct: 118 VPQLAGLKRGAQIVVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILA 177
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
+ +V LFSAT+P +K I+TK+L +++ K + + N+ S
Sbjct: 178 DTPEYKQVA--LFSATMPPGIKKITTKYLHD---PVEVTVKSKTQTAENITQRYFQVSYP 232
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLA 403
+ + ++ G I+F TK++ ++A+ L A A++GDI Q+ RE T+A
Sbjct: 233 RKIDALTRLLEV-EEGDAMIVFVRTKQATEEVAEKLRARGFAAAAINGDIPQAVRERTIA 291
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
+ G LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG +G A +
Sbjct: 292 SLKDGTIDILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTAFLFV 351
Query: 464 DPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEEL 522
PR + ++ IER + K P D+ A+ + + DS+ A + E+
Sbjct: 352 TPRERHLLNSIERVTRQKLVESQLPSVEDV-------NAQRVEKFRDSITDALNAPGFEM 404
Query: 523 L 523
Sbjct: 405 F 405
>gi|71906757|ref|YP_284344.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
N-terminal, partial [Dechloromonas aromatica RCB]
gi|71846378|gb|AAZ45874.1| ATP-dependent RNA helicase CsdA [Dechloromonas aromatica RCB]
Length = 606
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 159/423 (37%), Positives = 228/423 (53%), Gaps = 44/423 (10%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S L + L G E+ PIQA ++L+G DL+G A+TG GKT AF LP++E +
Sbjct: 13 LSETLLQTLTQIGYETPSPIQAQCIPVLLEGHDLIGMAQTGTGKTAAFALPLMEQIDVKL 72
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
TK P L+L PTRELA QV E Y + G +YGG Y Q +L
Sbjct: 73 TK----------PQALILTPTRELAIQVAEALQTYAKNLPGFHVLPIYGGQSYTIQLKQL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
+G V++GTPGR+ DH+ER ++L LK VLDEADEMLRMGF++DVE IL + +
Sbjct: 123 SRGAHVIVGTPGRVMDHLERKTLNLDHLKTMVLDEADEMLRMGFIDDVEWILERTPAQH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN----VRHIVLPCSSSARS 350
QT LFSAT+P ++ ++ K+L ++ K+K++T +R + S +
Sbjct: 182 -QTALFSATMPEQIRRVAQKYLVEPREI-------KIKSATATVAAIRQVYWQVSGMHKL 233
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFR 406
+ I+ IIF TK + +LAD L A AL+GD+ Q RE + +
Sbjct: 234 DALTRILEVEEDFDAAIIFVRTKTATVELADKLSARGYAAAALNGDLNQQMRERVIEQLK 293
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
SG ++AT+VAARG+D+ V ++ + P D EAY+HR GRTGRAG TG A++ PR
Sbjct: 294 SGALDIVIATDVAARGIDVPRVSHVVNYDIPYDTEAYVHRIGRTGRAGRTGNAILFVAPR 353
Query: 467 KSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNN 525
+ + + IER + ++ P AD+ T +V+D FKS E+LN
Sbjct: 354 EIRMLRTIERATRSPIAPLTLPSRADV----------TNKRVAD-----FKSKVVEVLNA 398
Query: 526 SGL 528
GL
Sbjct: 399 EGL 401
>gi|440713990|ref|ZP_20894578.1| cold-shock DEAD box protein A [Rhodopirellula baltica SWK14]
gi|436441186|gb|ELP34452.1| cold-shock DEAD box protein A [Rhodopirellula baltica SWK14]
Length = 895
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 164/428 (38%), Positives = 239/428 (55%), Gaps = 24/428 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+++ + + G + PIQA +LDG D++ +++TG GKT AF LPIL S
Sbjct: 279 VQKAVAASGYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFALPIL----------S 328
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGI 238
+ R P VLVL PTRELA QV F YG + G +YGG Y Q +L++G+
Sbjct: 329 RVDVRSRRPQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRRGV 388
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
VV+GTPGR+ DH++RG +DL SL VLDEADEML MGF+EDV+ +L K + +V
Sbjct: 389 QVVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQV--A 446
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSATLP ++ I+ ++L +D I + K + +VR L S + + I+
Sbjct: 447 LFSATLPKPIRKIADEYL-NDPARITI--KSKTITAASVRQRALFVSPRDKIDALTRILE 503
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ G I+FT+TK+S +A+ L A AL+GD+ Q RE T+ + G+ LV
Sbjct: 504 VEETDG-VIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLV 562
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM-LYDPRKSSVSKI 473
AT+VAARGLD+ + + + P D E+Y+HR GRTGRAG +G A++ L + ++ + I
Sbjct: 563 ATDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQAIIFLTNAQRRQLRFI 622
Query: 474 ERESGVKFEHISAPQPADIAKAAGVEAAETITQVS-DSVIPAFKSAAEELLNNSGLSAAE 532
E + E I P ADI +A + IT VS D + +K + SG E
Sbjct: 623 ENTTKQPIEIIDIPTVADINEARVRRFKQRITDVSADQDLTVYKDMIAQYAEESG-KPME 681
Query: 533 LLAKALAK 540
++A ALA+
Sbjct: 682 MIAAALAE 689
>gi|269838391|ref|YP_003320619.1| DEAD/DEAH box helicase [Sphaerobacter thermophilus DSM 20745]
gi|269787654|gb|ACZ39797.1| DEAD/DEAH box helicase domain protein [Sphaerobacter thermophilus
DSM 20745]
Length = 526
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 153/395 (38%), Positives = 214/395 (54%), Gaps = 45/395 (11%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ + + + G E PIQ ++L G DL+ +A+TG GKT AF LPI+E L
Sbjct: 9 LSEPVLKAIDAVGFEEPTPIQREAIPLLLSGRDLIAQAQTGTGKTAAFALPIIERLQPN- 67
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
GR P LVL PTRELA QV + F G +YGG P Q L+
Sbjct: 68 ---------GRRPQALVLAPTRELAVQVAQTFHQLGRVRDTRVLAVYGGQPIERQLRALR 118
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
++VV+GTPGR+ DHI R +DLS++ V+DEADEML MGF+EDVE IL V +
Sbjct: 119 HPVEVVVGTPGRVMDHIRRETLDLSNVSTVVIDEADEMLDMGFIEDVEWILDHV--PAER 176
Query: 296 QTLLFSATLPSWVKHISTKFLKS----------------DKKTIDLVGNEKMKASTNVRH 339
QT LFSAT+P V ++ ++L+ ++ +++V K++A T +
Sbjct: 177 QTALFSATIPDRVAALARRYLRDPARVAVEPERVTVPQIEQTYVEVVQRAKVEALTRILD 236
Query: 340 IVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQRE 399
+ P S+ II C + G E QL L A ALHGD+ Q QR+
Sbjct: 237 METPPSA---------IIFCRTKRG-------VDELTQQLQSLGYAAEALHGDLSQVQRD 280
Query: 400 VTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 459
+A FRSG+ L+AT+VAARGLD+ + +I + P D E+Y+HR GRTGRAG G A
Sbjct: 281 RVMARFRSGQAELLIATDVAARGLDVEGITHVINYDIPGDPESYVHRIGRTGRAGRAGAA 340
Query: 460 VMLYDPR-KSSVSKIERESGVKFEHISAPQPADIA 493
+ L PR + + +IER +GV+ P P ++A
Sbjct: 341 ITLVTPRERRLLREIERATGVRMTRRGVPTPEEVA 375
>gi|399155306|ref|ZP_10755373.1| Cold-shock DEAD box protein A-like protein [SAR324 cluster
bacterium SCGC AAA001-C10]
Length = 627
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 150/382 (39%), Positives = 213/382 (55%), Gaps = 22/382 (5%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F + L++ L G E+ PIQ T ++L+ D++G+A+TG GKT AF LP+L +L
Sbjct: 6 SEFELKPALQKSLDEVGYETPTPIQKQTIPLMLEKKDVLGQAQTGTGKTAAFALPLLSNL 65
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQ 230
+ P VLVL PTRELA QV E F Y + +YGG Y Q
Sbjct: 66 NL----------RQKDPQVLVLAPTRELAIQVAEAFKKYASHMKSFHVLPIYGGQEYSGQ 115
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
LK+G VV+GTPGR+ DH+ RG + L L VLDEADEMLRMGF++DVE IL +
Sbjct: 116 IRGLKRGSHVVVGTPGRVMDHMRRGTLKLDKLSTLVLDEADEMLRMGFIDDVEWILEQT- 174
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
+ Q LFSAT+P ++ I+T++LK ++++ +K + +R P S +
Sbjct: 175 -PKERQIALFSATMPHQIRRIATRYLKD---PVEIIIKDKTTTAPTIRQRFWPVSGMHKL 230
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFR 406
+ I+ +IF TK + +L+ L + L+GDI+Q+QRE ++ +
Sbjct: 231 DALTRILEAEPFEA-ILIFVRTKTATVELSAKLEARGYASTPLNGDIKQNQRERSIESLK 289
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
SGK LVAT+VAARGLD+ + +I + P D E Y+HR GRTGRAG G A++ PR
Sbjct: 290 SGKLDILVATDVAARGLDVERITHVINYDIPHDTEGYVHRIGRTGRAGRQGDAILFVAPR 349
Query: 467 -KSSVSKIERESGVKFEHISAP 487
KS + IER + K E + P
Sbjct: 350 EKSMLHAIERATNQKIEIMELP 371
>gi|422324449|ref|ZP_16405486.1| hypothetical protein HMPREF0737_00596 [Rothia mucilaginosa M508]
gi|353343971|gb|EHB88284.1| hypothetical protein HMPREF0737_00596 [Rothia mucilaginosa M508]
Length = 638
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 143/355 (40%), Positives = 205/355 (57%), Gaps = 7/355 (1%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F + + + L + GI S FPIQ +T + L G D++G+A+TG GKTL F LP ++ +
Sbjct: 77 FGVRQDISDALAAVGITSPFPIQELTLPVALSGQDIIGQAKTGTGKTLGFGLPTIQRVVG 136
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
+ Y AP L+L+PTRELA QV ED + LYGG P Q
Sbjct: 137 RDDEGWADLEYPGAPQALILVPTRELAIQVGEDLAIAAKLRNARVATLYGGVPIEPQAEL 196
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L++G++V +GTPGRI D ++G ++L +K VLDEADEML +GF VE IL + +
Sbjct: 197 LRRGLEVAVGTPGRIIDLCQQGFLNLKQVKIVVLDEADEMLDLGFQPSVEKILSYLPEDR 256
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
Q++LFSAT+P V ++ +++ + + K ++R +V + ++I
Sbjct: 257 --QSMLFSATMPGPVIAMARQYMTKPMRISAADPEDASKTKASIRQVVYRAHHLDKDEMI 314
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409
I+R + GRT+IFT+TK A+++A+ L A LHGD+ Q RE L FRSGK
Sbjct: 315 GRILRA-TGRGRTVIFTKTKRDAARVAEELVNRGFAAAPLHGDLNQVAREQALKAFRSGK 373
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
LVAT+VAARG+D+ DV +I P D + Y+HR+GRTGRAGN G AV L D
Sbjct: 374 VDILVATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGNEGTAVTLVD 428
>gi|376289872|ref|YP_005162119.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae C7
(beta)]
gi|372103268|gb|AEX66865.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae C7
(beta)]
Length = 436
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 146/352 (41%), Positives = 209/352 (59%), Gaps = 16/352 (4%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+ + L + G++ F IQ +T + LDG DL+G+ARTG GKT F +P+++ + + A+
Sbjct: 19 ITDALATVGVKRTFAIQELTLPIALDGRDLIGQARTGMGKTYGFGVPLIDRVFD----AA 74
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
P LV++PTRELA QV +D + + +T +YGG PY Q +L+ G+D
Sbjct: 75 DVAELDGTPRALVVVPTRELAHQVGDDLKLLSRNIPITVATIYGGRPYDEQIAQLESGVD 134
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+GTPGR+ D +RGN+ L + VLDEADEML +GF D+E +L + + QT+L
Sbjct: 135 VVVGTPGRLIDLYQRGNLALDHVAVLVLDEADEMLDLGFFPDIEKLLAALTHPH--QTML 192
Query: 300 FSATLPSWVKHISTKFLKSDKKT-IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
FSAT+P V ++ F+ + G + AST ++ +S V +++
Sbjct: 193 FSATMPGAVVTLARTFMHQPVHIRAEDTGAAQTHASTT--QVIFQAHRMDKSAVTARVLQ 250
Query: 359 CYSSGGRTIIFTETKESASQLADLLP--GAR--ALHGDIQQSQREVTLAGFRSGKFMTLV 414
G+TIIF TK +A++LAD L G R +HGD+ QS RE +L FR+GK LV
Sbjct: 251 AEGR-GKTIIFARTKRTAAELADDLAQRGFRVAGVHGDLGQSAREASLDAFRTGKAHILV 309
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML--YD 464
AT+VAARGLDI+DV +I + P D Y+HR GRTGRAG+TG AV L YD
Sbjct: 310 ATDVAARGLDIDDVTHVINYQTPDDPMTYVHRIGRTGRAGHTGTAVTLVGYD 361
>gi|418460459|ref|ZP_13031553.1| DNA/RNA helicase, superfamily II, partial [Saccharomonospora azurea
SZMC 14600]
gi|359739435|gb|EHK88301.1| DNA/RNA helicase, superfamily II, partial [Saccharomonospora azurea
SZMC 14600]
Length = 488
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 150/356 (42%), Positives = 209/356 (58%), Gaps = 21/356 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L + GIE F IQA+T + L G D++G+ARTG GKTL F +P+L+ L G
Sbjct: 21 LDASGIERTFDIQALTLPLALSGDDVIGQARTGTGKTLGFGVPLLQRLA--------LPG 72
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
G P LV++PTREL QV +D + G +G+ +YGG PY +Q L+ G+DVVIG
Sbjct: 73 DG-TPQALVVVPTRELCVQVSQDLENAGKHLGVRIASIYGGRPYESQIKSLRDGVDVVIG 131
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D E+ ++ L + VLDEADEML +GF+ D+E IL V + + QT+LFSAT
Sbjct: 132 TPGRLLDLAEQRHLVLGKVATLVLDEADEMLDLGFLPDIERILRMVPE--QRQTMLFSAT 189
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P + ++ FL+ I NE V S + +++ +++ +
Sbjct: 190 MPGPILTLARTFLRQPTH-IRAEDNEAGAVHERTTQFVYRSHSLDKPELVAKVLQAENR- 247
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
G T+IFT TK +A ++AD L A A+HGD+ Q RE L FRSGK LVAT+VA
Sbjct: 248 GLTMIFTRTKRTAQKVADDLTERGFAAAAVHGDLGQGAREQALRAFRSGKVDVLVATDVA 307
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PRKSSVS 471
ARG+D++DV +I + P D + Y+HR GRTGRAG TGVA+ L D PR +S
Sbjct: 308 ARGIDVDDVTHVINYQTPEDEKTYVHRIGRTGRAGKTGVAITLVDWDEIPRWKLIS 363
>gi|145219994|ref|YP_001130703.1| DEAD/DEAH box helicase [Chlorobium phaeovibrioides DSM 265]
gi|145206158|gb|ABP37201.1| ATP-dependent RNA helicase CsdA [Chlorobium phaeovibrioides DSM
265]
Length = 598
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 151/375 (40%), Positives = 218/375 (58%), Gaps = 22/375 (5%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
P+ L G E+ PIQA T ++++G D++G+A+TG GKT AF LPIL ++ T+
Sbjct: 20 PVLRALADVGYETPTPIQARTIPLLIEGRDVLGQAQTGTGKTAAFALPILSNIDFSATE- 78
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKG 237
P VLVL PTRELA QV E F Y + G +YGG Y +Q LK+G
Sbjct: 79 ---------PQVLVLAPTRELAIQVAEAFHKYAEHLKGFHVLPIYGGQEYGSQLRMLKRG 129
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
+ VV+GTPGR+ DH+ +G+++L SLK VLDEADEMLRMGF++DVE IL + + Q
Sbjct: 130 VHVVVGTPGRVMDHMRKGSLNLHSLKCLVLDEADEMLRMGFIDDVEWILEQT--PSDRQV 187
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P+ ++ I+ K+L +D + + K +R S + ++ I+
Sbjct: 188 ALFSATMPAPIRRIAQKYL-NDPAEVTI--QAKTTTVDTIRQRYWIVGGSHKIDILTRIL 244
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
G IIF TK ++A+ L A AL+GD+ Q QRE T+ +SG +
Sbjct: 245 EVEPFDG-MIIFVRTKTMTLEIAEKLQARGYSAAALNGDMVQQQRERTIDQLKSGALNIV 303
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSK 472
+AT+VAARGLD+ + +I + P D E+Y+HR GRTGRAG +G A++ PR ++ +S
Sbjct: 304 IATDVAARGLDVERISHVINYDIPSDTESYVHRIGRTGRAGRSGEAILFVSPRERNMLSS 363
Query: 473 IERESGVKFEHISAP 487
IER + K E + P
Sbjct: 364 IERATRKKIELMELP 378
>gi|194336034|ref|YP_002017828.1| DEAD/DEAH box helicase [Pelodictyon phaeoclathratiforme BU-1]
gi|194308511|gb|ACF43211.1| DEAD/DEAH box helicase domain protein [Pelodictyon
phaeoclathratiforme BU-1]
Length = 599
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 148/380 (38%), Positives = 217/380 (57%), Gaps = 22/380 (5%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
+++ PL L G E+ PIQA T ++L+G D++G+A+TG GKT AF LPIL ++
Sbjct: 6 LQLAEPLMRALADVGYENPTPIQAQTIPLILEGRDVLGQAQTGTGKTAAFALPILSNIDL 65
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEF 232
+ P LVL PTRELA QV E F Y + G +YGG Y Q
Sbjct: 66 EHAE----------PQALVLAPTRELAIQVAEAFQRYAEHLKGFHVVPIYGGQDYGIQLR 115
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G+ +V+GTPGR+ DH+ RG+++L+SLK VLDEADEMLRMGF++DVE IL +
Sbjct: 116 MLRRGVHIVVGTPGRVMDHMRRGSLNLASLKCLVLDEADEMLRMGFIDDVEWILDQTPKG 175
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+V LFSAT+P ++ I+ K+L + ++ K +R S + +
Sbjct: 176 RQVA--LFSATMPPVIRRIAQKYLHNPA---EVTIQTKTTTVDTIRQRYWIVGGSHKIDI 230
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408
+ I+ G +IF TK +LA+ L GA AL+GD+ Q+QRE T+ ++G
Sbjct: 231 LTRILEVEPFDG-MLIFVRTKTMTLELAEKLQARGYGAAALNGDMPQNQRERTVDQLKNG 289
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-K 467
++AT+VAARGLD+ + +I + P D E+Y+HR GRTGRAG G A++ PR K
Sbjct: 290 ALSIVIATDVAARGLDVERISHVINYDIPSDTESYVHRIGRTGRAGRAGDAILFVSPREK 349
Query: 468 SSVSKIERESGVKFEHISAP 487
+ + IER + + E + P
Sbjct: 350 NMLYSIERATHSRIELMELP 369
>gi|108800931|ref|YP_641128.1| DEAD/DEAH box helicase [Mycobacterium sp. MCS]
gi|119870071|ref|YP_940023.1| DEAD/DEAH box helicase [Mycobacterium sp. KMS]
gi|126436556|ref|YP_001072247.1| DEAD/DEAH box helicase [Mycobacterium sp. JLS]
gi|108771350|gb|ABG10072.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. MCS]
gi|119696160|gb|ABL93233.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. KMS]
gi|126236356|gb|ABN99756.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. JLS]
Length = 557
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 149/370 (40%), Positives = 212/370 (57%), Gaps = 21/370 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ IQA T +L GSD+VG A+TG GKT AF +PIL SK RA
Sbjct: 32 GYETPSAIQAATIPAMLAGSDVVGLAQTGTGKTAAFAIPIL----------SKIDPNSRA 81
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGR 247
LVL PTRELA QV E F YG + + +YGG+ Y Q LK+G VV+GTPGR
Sbjct: 82 TQALVLAPTRELALQVAEAFGRYGAHLPVNVLPVYGGSSYGPQMAGLKRGAQVVVGTPGR 141
Query: 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSW 307
+ DH+E+G++DLS L + VLDEADEML+MGF EDVE IL + +V LFSAT+P
Sbjct: 142 VIDHLEKGSLDLSHLDYMVLDEADEMLQMGFAEDVERILSDTPEYKQVA--LFSATMPPG 199
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTI 367
+K I+ K+L +++ K + + N+ + S + + ++ G I
Sbjct: 200 IKKITKKYLHD---PVEVTVKSKTQTAENITQRYIQVSYPRKMDALTRLLETEQGDG-MI 255
Query: 368 IFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423
+F TK++ ++A+ L A A++GDI Q+ RE T++ + G LVAT+VAARGL
Sbjct: 256 VFVRTKQATEEVAEKLRARGFAAAAINGDIPQAVRERTISQLKDGSIDILVATDVAARGL 315
Query: 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFE 482
D+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR + ++ IER + K
Sbjct: 316 DVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLNSIERVTRQKLV 375
Query: 483 HISAPQPADI 492
I P D+
Sbjct: 376 EIQLPSVEDV 385
>gi|113971754|ref|YP_735547.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-4]
gi|113886438|gb|ABI40490.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
Length = 622
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 156/421 (37%), Positives = 232/421 (55%), Gaps = 27/421 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G E PIQ+ + D ++ G D++G+A+TG GKT AF LP+L +T+
Sbjct: 21 LDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTSQAV------- 73
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P +LVL PTRELA QV E F Y + G +YGG H Q LK+G V++
Sbjct: 74 ----PQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLNALKRGPQVIV 129
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+ RG + L +L+ VLDEADEML+MGF++D+E IL + Q LFSA
Sbjct: 130 GTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQR--QLALFSA 187
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P +K ++ K LK D I + + S R + + S + + + ++ ++
Sbjct: 188 TMPEQIKRVANKHLK-DATNISIAASHTTVDSIEQRFVQV--SQHNKLEALVRVLEVENT 244
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G IIF T+ S +LA+ L + LHGD+ Q RE + +SGK L+AT+V
Sbjct: 245 EG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKSGKLDILIATDV 303
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERES 477
AARGLD+ + ++ + P D EAY+HR GRTGRAG TG+A++ R+ + + IER +
Sbjct: 304 AARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERAT 363
Query: 478 GVKFEHISAPQPADIAK----AAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAEL 533
+ + P P +A+ G + A+T+TQ D + A ++L ++ L AA L
Sbjct: 364 NSRISPMKVPSPETVAERRLSRLGEQLAQTMTQDLDFMREAVAQLCQQLEVDTDLLAAAL 423
Query: 534 L 534
L
Sbjct: 424 L 424
>gi|302524385|ref|ZP_07276727.1| cold-shock DEAD-box protein [Streptomyces sp. AA4]
gi|302433280|gb|EFL05096.1| cold-shock DEAD-box protein [Streptomyces sp. AA4]
Length = 522
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 151/347 (43%), Positives = 203/347 (58%), Gaps = 21/347 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQA+T + + G DL+G+ARTG GKTL F +P+L + + G
Sbjct: 9 LAEAGIEHTFAIQALTLPLAMAGDDLIGQARTGMGKTLGFGVPLLHRV--------QVPG 60
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
G P VLV++PTREL QV D G +G+ + +YGG PY Q L+KG+DVVIG
Sbjct: 61 DG-TPQVLVVVPTRELCIQVANDLKGAGKHLGIRTLAIYGGRPYEPQIEALRKGVDVVIG 119
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D E+ ++ L ++ VLDEADEML +GF+ D+E IL V D QT+LFSAT
Sbjct: 120 TPGRLLDLAEQQHLVLGKIRGLVLDEADEMLDLGFLPDIERILRMVPDER--QTMLFSAT 177
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P + ++ FL I N+ V S ++++ I R +
Sbjct: 178 MPGPIITLARTFLNQPTH-IRAEENDAGAIHERTAQFVYRAHSMDKTEL---IARALQAE 233
Query: 364 GR--TIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
GR T+IF+ TK +A ++AD L A A+HGD+ Q RE L FRSGK LVAT+
Sbjct: 234 GRGLTMIFSRTKRTAQKIADDLVERGFAAAAVHGDLGQGAREQALRAFRSGKVDVLVATD 293
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
VAARG+DI+DV +I + P D + Y+HR GRTGRAG TGVA+ L D
Sbjct: 294 VAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGVAITLVD 340
>gi|354616053|ref|ZP_09033745.1| DEAD/DEAH box helicase domain protein, partial [Saccharomonospora
paurometabolica YIM 90007]
gi|353219600|gb|EHB84147.1| DEAD/DEAH box helicase domain protein, partial [Saccharomonospora
paurometabolica YIM 90007]
Length = 471
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 150/356 (42%), Positives = 210/356 (58%), Gaps = 21/356 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L+ GIE F IQ++T + L G D++G+ARTG GKTL F +P+L+ L+ G
Sbjct: 27 LQDTGIERTFAIQSLTLPLALAGDDVIGQARTGMGKTLGFGVPLLQRLS--------LPG 78
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
G P LV++PTREL QV +D G +G+ + +YGG PY AQ L++G+DVVIG
Sbjct: 79 DG-TPQALVVVPTRELCVQVAKDLTEAGAHLGVRTASIYGGRPYEAQIETLQQGVDVVIG 137
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D E+ + L + VLDEADEML +GF+ D+E IL V + K QT+LFSAT
Sbjct: 138 TPGRLLDLAEQQRLVLGKVGTLVLDEADEMLDLGFLPDIERILRMVPE--KRQTMLFSAT 195
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P + +++ FL I N++ R V S + +++ +++
Sbjct: 196 MPGPIINLARTFLHQPTH-IRAEENDEGAIHERTRQFVYRSHSLDKPELVAKVLQAEGR- 253
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
G T+IFT TK +A ++AD L A A+HGD+ Q RE L FRSGK LVAT+VA
Sbjct: 254 GLTMIFTRTKRTAQKVADDLAERGFAAAAVHGDLGQGAREQALRAFRSGKIDVLVATDVA 313
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PRKSSVS 471
ARG+D+ DV ++ + P D + Y+HR GRTGRAG TGVA+ L D PR +S
Sbjct: 314 ARGIDVEDVTHVVNYQTPDDQKTYVHRIGRTGRAGKTGVALTLVDWDEIPRWKLIS 369
>gi|2231116|emb|CAA65745.1| heat resistant RNA dependent ATPase [Thermus thermophilus HB8]
Length = 510
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 163/379 (43%), Positives = 223/379 (58%), Gaps = 22/379 (5%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L +G+ + PIQA + L+G DL+G+ARTG GKTLAF LPI E L P++
Sbjct: 14 EALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERL--APSQER-- 69
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
GR P LVL PTRELA QV + A L +YGG Y Q+ L +G D V
Sbjct: 70 ---GRKPRALVLTPTRELALQVASELTAV--APHLKVVAVYGGTGYGKQKEALLRGADAV 124
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
+ TPGR D++ +G +DLS ++ VLDEADEML MGF E+VE +L + QTLLFS
Sbjct: 125 VATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSR--QTLLFS 182
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
ATLPSW K ++ +++K + I+++ +E + +P R +V+ D++ +
Sbjct: 183 ATLPSWAKRLAERYMK-NPVLINVIKDEPVTYEEE----AVPAPVRGRLEVLSDLLYV-A 236
Query: 362 SGGRTIIFT----ETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
S R ++FT ET+E A L L A+ALHGD+ Q +RE L FR G+ LVAT+
Sbjct: 237 SPDRAMVFTRTKAETEEIAQGLLRLGHLAQALHGDLSQGERERVLGAFRQGEVRVLVATD 296
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERE 476
VAARGLDI V L++ P EAY HRSGRTGRAG G V+LY PR + V +ER
Sbjct: 297 VAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERA 356
Query: 477 SGVKFEHISAPQPADIAKA 495
G +F+ ++ P P ++ +A
Sbjct: 357 VGRRFKRVNPPTPEEVLEA 375
>gi|154509558|ref|ZP_02045200.1| hypothetical protein ACTODO_02090 [Actinomyces odontolyticus ATCC
17982]
gi|153799192|gb|EDN81612.1| DEAD/DEAH box helicase [Actinomyces odontolyticus ATCC 17982]
Length = 581
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 148/385 (38%), Positives = 226/385 (58%), Gaps = 23/385 (5%)
Query: 102 RGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTL 161
+GE + + F ++ P+ + L+ +GI FPIQA+T L+ D++G+A+TG GKTL
Sbjct: 56 KGEDLDKKSFADFGVTDPIVDALEDQGITHPFPIQALTLGPALERHDIIGQAKTGTGKTL 115
Query: 162 AFVLPILESLTNGPTKASKKTGY-----GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGL 216
F +P+LE + A + GY P L++LPTREL KQV +D +
Sbjct: 116 GFGIPVLEDVI-----APDEEGYEDLLNPNKPQALIILPTRELTKQVAQDLREAAKYLST 170
Query: 217 TSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM 276
+YGG + Q L++G D+V+GTPGR+ D + +G++ LS ++ VLDEADEML +
Sbjct: 171 RIVEIYGGVAFEPQIEALERGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDL 230
Query: 277 GFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN 336
GF+ DVE +L +V + N+ T+LFSAT+P V ++ +F+ +++ +
Sbjct: 231 GFLPDVETLLSRVPE-NR-HTMLFSATMPGPVVALARRFMVQPTHIRAQDPDDQNQTVNT 288
Query: 337 VRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHG 391
V+ ++ + + +V+ I++ G RT+IF TK +A++L + L AR +LHG
Sbjct: 289 VKQVIYRVHAMNKVEVVARILQAEGRG-RTVIFCRTKRTAARLGEDLT-ARGFAVGSLHG 346
Query: 392 DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451
D+ Q RE L FR+GK LVAT+VAARG+D++DV +I + P D + YIHR GRTG
Sbjct: 347 DLGQGAREQALRAFRNGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTG 406
Query: 452 RAGNTGVAVMLYD----PRKSSVSK 472
RAGN+G AV D PR S +SK
Sbjct: 407 RAGNSGTAVTFVDWDDTPRWSLISK 431
>gi|159901480|ref|YP_001547727.1| DEAD/DEAH box helicase [Herpetosiphon aurantiacus DSM 785]
gi|159894519|gb|ABX07599.1| DEAD/DEAH box helicase domain protein [Herpetosiphon aurantiacus
DSM 785]
Length = 584
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 148/371 (39%), Positives = 214/371 (57%), Gaps = 23/371 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E PIQA + ++L G+D++ +A+TG GKT AF LP +E + K G
Sbjct: 21 GYEEPTPIQAQSIGLMLSGNDIIAQAQTGTGKTAAFSLPTIERID------PKAMGV--- 71
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGR 247
L+L PTRELA QV + YG + + + +YGG P Q LK+G+++VIGTPGR
Sbjct: 72 -QALILTPTRELAVQVSDAISAYGKYLNIRALPVYGGQPIDRQLRALKRGVNIVIGTPGR 130
Query: 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSW 307
+ DH+ERG +DLS+++ VLDEADEML MGFV+D+E IL + QT L+SAT+P
Sbjct: 131 LMDHMERGTLDLSTVRTVVLDEADEMLNMGFVDDIEYILERA--PKDRQTALYSATMPDE 188
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKAST-NVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ ++ K+L+S + +V E+ + + +R + + + +V+ I+
Sbjct: 189 IARLARKYLRSPQ----MVTIEREQLTVPQIRQVYYEIGARDKFEVLTRILDLEMPTS-A 243
Query: 367 IIFTETKESASQLADLL----PGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK +L + L GA LHGD+ Q+ R+ + FR + LVAT+VAARG
Sbjct: 244 IIFCRTKAMVDELGEKLLARGYGAELLHGDLSQAMRDRVMKRFREEQVEILVATDVAARG 303
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKF 481
LDI V +I + P D EAY+HR GRTGRAG +GVAV L PR + + IER +G
Sbjct: 304 LDIEHVSHVINYDIPLDPEAYVHRIGRTGRAGRSGVAVTLVTPRERRQLRTIERMTGAPI 363
Query: 482 EHISAPQPADI 492
+ + P AD+
Sbjct: 364 QRLRLPTIADV 374
>gi|389795816|ref|ZP_10198925.1| DNA/RNA helicase [Rhodanobacter fulvus Jip2]
gi|388430147|gb|EIL87341.1| DNA/RNA helicase [Rhodanobacter fulvus Jip2]
Length = 622
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 148/370 (40%), Positives = 210/370 (56%), Gaps = 22/370 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G ES PIQA T +L+G D++G+A+TG GKT AF LPIL + +A K
Sbjct: 28 LADVGYESPSPIQAATIPPLLEGRDVLGQAQTGTGKTAAFALPILSRIN---PRAGK--- 81
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P LVL PTRELA QV E F Y + G +YGG Y Q LK+G+ VV+
Sbjct: 82 ----PQALVLAPTRELAIQVAEAFQRYAAHIPGFQVLPIYGGQSYGPQLHALKRGVHVVV 137
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+++G +DLS L+F VLDEADEMLRMGF++DVE +L +V LFSA
Sbjct: 138 GTPGRVIDHLDKGTLDLSELRFLVLDEADEMLRMGFIDDVEKVLHATPPERQVA--LFSA 195
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ I+ + LK ++++ + N+ S + + I+
Sbjct: 196 TMPAVIRKIAQRHLKD---PVEVIIKSSTTTAANIHQRYWFVSGMHKLDALTRILEAEPF 252
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
IIF TK++ +LA L A A++GDI Q+QRE + + GK LVAT+V
Sbjct: 253 DA-MIIFARTKQATEELAGKLQARGLAAAAINGDIAQAQRERVIQQLKDGKLDILVATDV 311
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERES 477
AARGLD++ + ++ + P D E+Y+HR GRTGRAG +G A++ PR + + IER +
Sbjct: 312 AARGLDVDRISHVLNFDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLGAIERAT 371
Query: 478 GVKFEHISAP 487
E + P
Sbjct: 372 RQPIEQMQLP 381
>gi|218295270|ref|ZP_03496106.1| DEAD/DEAH box helicase domain protein [Thermus aquaticus Y51MC23]
gi|218244473|gb|EED10998.1| DEAD/DEAH box helicase domain protein [Thermus aquaticus Y51MC23]
Length = 513
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 166/381 (43%), Positives = 231/381 (60%), Gaps = 23/381 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
++E L +GI + PIQA + L+G DL+G+ARTG GKTLAF LPI + L +AS
Sbjct: 12 IKEALYGRGITAPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAQRL-----EAS 66
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
++ GR P LVL PTRELA QV +V A L +YGG Y Q+ +L+KG D
Sbjct: 67 RQR--GRKPRALVLTPTRELALQVAS--EVAALAPHLKVVPVYGGTGYGKQKEELQKGAD 122
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+ TPGR D++ +G +DLS ++ VLDEADEML MGF E+VE IL + QTLL
Sbjct: 123 VVVATPGRALDYLRQGVLDLSEVEIAVLDEADEMLSMGFEEEVEAILAATPPSR--QTLL 180
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSATLP+W + ++ +++KS I++V E + I+ P R ++ D++
Sbjct: 181 FSATLPTWARRLAERYMKS-PVVINVVKEEGVTYQEEA--ILAPTD---RLALLSDLLYV 234
Query: 360 YSSGGRTIIFT----ETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
+ R I+FT ET+E A+ L L ARA+HGD+ Q+ RE + FR G+ LVA
Sbjct: 235 -KAPKRAIVFTKTKAETEEVATGLLRLGHAARAIHGDLSQADRERVMRAFREGEVRVLVA 293
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIE 474
T+VAARGLDI +V L++ P E Y HRSGRTGRAG G V+LY PR K ++++E
Sbjct: 294 TDVAARGLDIPEVDLVVHYRLPDKPETYQHRSGRTGRAGRGGEVVILYGPREKRELAELE 353
Query: 475 RESGVKFEHISAPQPADIAKA 495
R G F+ ++ P P ++ +A
Sbjct: 354 RAVGRPFKRVNPPTPEEVLEA 374
>gi|55980078|ref|YP_143375.1| ATP-dependent RNA helicase [Thermus thermophilus HB8]
gi|55771491|dbj|BAD69932.1| ATP-dependent RNA helicase [Thermus thermophilus HB8]
Length = 517
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 163/379 (43%), Positives = 223/379 (58%), Gaps = 22/379 (5%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L +G+ + PIQA + L+G DL+G+ARTG GKTLAF LPI E L P++
Sbjct: 21 EALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERL--APSQER-- 76
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
GR P LVL PTRELA QV + A L +YGG Y Q+ L +G D V
Sbjct: 77 ---GRKPRALVLTPTRELALQVASELTAV--APHLKVVAVYGGTGYGKQKEALLRGADAV 131
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
+ TPGR D++ +G +DLS ++ VLDEADEML MGF E+VE +L + QTLLFS
Sbjct: 132 VATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSR--QTLLFS 189
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
ATLPSW K ++ +++K + I+++ +E + +P R +V+ D++ +
Sbjct: 190 ATLPSWAKRLAERYMK-NPVLINVIKDEPVTYEEE----AVPAPVRGRLEVLSDLLYV-A 243
Query: 362 SGGRTIIFT----ETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
S R ++FT ET+E A L L A+ALHGD+ Q +RE L FR G+ LVAT+
Sbjct: 244 SPDRAMVFTRTKAETEEIAQGLLRLGHLAQALHGDLSQGERERVLGAFRQGEVRVLVATD 303
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERE 476
VAARGLDI V L++ P EAY HRSGRTGRAG G V+LY PR + V +ER
Sbjct: 304 VAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERA 363
Query: 477 SGVKFEHISAPQPADIAKA 495
G +F+ ++ P P ++ +A
Sbjct: 364 VGRRFKRVNPPTPEEVLEA 382
>gi|227501650|ref|ZP_03931699.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
gi|306835824|ref|ZP_07468821.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
gi|227077675|gb|EEI15638.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
gi|304568298|gb|EFM43866.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
Length = 623
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 150/389 (38%), Positives = 222/389 (57%), Gaps = 22/389 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G + PIQA T ++++G D+VG A+TG GKT AF LP+L L R
Sbjct: 74 GFTTPSPIQAETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQLDP----------QARH 123
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV + F + + G+ +YGG Y Q L++G V++GTPG
Sbjct: 124 PQALVLAPTRELALQVADAFQSFAETLKGIEVLPIYGGQAYGIQLSGLRRGAQVIVGTPG 183
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+E+G++DLS L+F VLDEADEML MGF EDVE IL D + Q LFSAT+P+
Sbjct: 184 RVIDHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILESTPD--RKQVALFSATMPN 241
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ +S ++L + + V +E+ + + N++ L A+ I+ +
Sbjct: 242 AIRRLSKQYLHNPAEVT--VKSER-RTNDNIKQRFLLIPHRAKMDAFTRILEVITYDA-I 297
Query: 367 IIFT----ETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F ET+E A L D A A++GDI Q+QRE T+ + G+ LVAT+VAARG
Sbjct: 298 IVFCRTKHETEEVAEALRDRGYSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 357
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKF 481
LD+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR + + IER + +
Sbjct: 358 LDVERITHVVNFDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERVTNARL 417
Query: 482 EHISAPQPADIAKAAGVEAAETITQVSDS 510
E + P ++ + + A+ ITQ D+
Sbjct: 418 EEMDLPSVDEVNEKRKEKFAQAITQSMDN 446
>gi|407695316|ref|YP_006820104.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax dieselolei
B5]
gi|407252654|gb|AFT69761.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax dieselolei
B5]
Length = 559
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 151/378 (39%), Positives = 220/378 (58%), Gaps = 22/378 (5%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ PL + + G E+ PIQ + ++LDG DL+G+A+TG GKT AF LP+L + P
Sbjct: 13 LPAPLLDAIGKLGFETPSPIQERSIPVLLDGDDLLGQAQTGTGKTAAFGLPLLARID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
+ R P +LV+ PTRELA QV + + + + G+ +YGG+ Y Q L
Sbjct: 71 EQ--------RCPQLLVIAPTRELALQVADAMETFARQLRGVKVVAVYGGSEYRTQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
+ G VV+GTPGRI DH++RG+++L L+ VLDEADEMLRMGF++DVE IL D
Sbjct: 123 RDGAQVVVGTPGRIMDHMQRGSLNLDRLQALVLDEADEMLRMGFIDDVEWILEHTPDER- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
Q LFSAT+P+ ++ ++ + LKS K I + + K + +R S + +
Sbjct: 182 -QLALFSATMPNVIRRVAERHLKS-PKWIRIENDTTTK--SGIRQRFWSVSGLNKLDAMC 237
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKF 410
I+ + G I+F TK+S +LA+ L A AL+GDI Q+QRE T+A R G+F
Sbjct: 238 RILEGETHDG-VIVFARTKQSTLELAEQLQRRGLRAEALNGDIPQAQREKTVARLREGRF 296
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 470
L+AT+V ARGLD+ + +I + P D EAY+HR GRTGRAG G A++ R+ +
Sbjct: 297 DLLIATDVVARGLDVPRISHVINYDMPADTEAYVHRIGRTGRAGRNGEAILFVSHRERGM 356
Query: 471 SK-IERESGVKFEHISAP 487
+ IER +G E + P
Sbjct: 357 LRAIERATGQSLESMDLP 374
>gi|383826631|ref|ZP_09981754.1| cold-shock DEAD-box protein, DeaD [Mycobacterium xenopi RIVM700367]
gi|383332437|gb|EID10918.1| cold-shock DEAD-box protein, DeaD [Mycobacterium xenopi RIVM700367]
Length = 566
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 158/426 (37%), Positives = 233/426 (54%), Gaps = 33/426 (7%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P A +I + + G ES IQA T ++ GSD+VG A+TG GKT AF +PI
Sbjct: 12 PAAFDDLQIHPSVLRAIAEVGYESPSAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPI 71
Query: 168 LESL--TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGG 224
L + T+ T+A LVL PTRELA QV E F YG + LT+ +YGG
Sbjct: 72 LSRIDTTSNATQA------------LVLAPTRELALQVSEAFSRYGAHLPRLTALPIYGG 119
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
A Y Q L++G VV+GTPGR+ DH+ERG +DLS + + VLDEADEML MGF EDVE
Sbjct: 120 ASYSVQLAGLRRGAQVVVGTPGRVIDHLERGTLDLSRVDYLVLDEADEMLAMGFAEDVER 179
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344
IL + +V LFSAT+P ++ I+ K+L + +++ K + N+ +
Sbjct: 180 ILSDTPEYKQVA--LFSATMPPAIRAITAKYL---HEPLEITVEAKTTTAENISQRYIQV 234
Query: 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREV 400
+ + + ++ I+F TK++ ++A+ L A A++GDI Q+QRE
Sbjct: 235 AGPRKMDALTRVLEVEPFEA-MIVFVRTKQATEEVAEKLCARGFSAAAINGDIPQTQRER 293
Query: 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV 460
T+A + G LVAT+VAARGLD++ V ++ + P D E+Y+HR GRTGRAG +G A+
Sbjct: 294 TIAALKDGGLDILVATDVAARGLDVDRVSHVLNYDIPHDTESYVHRIGRTGRAGRSGTAL 353
Query: 461 MLYDPRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAA 519
+ PR+ + K IE+ + + P D+ A+ + + +DS+ A S
Sbjct: 354 LFVSPRERHLLKAIEKATRQRLIEAELPTVDDV-------NAQRVAKFADSITDALGSPG 406
Query: 520 EELLNN 525
EL +
Sbjct: 407 MELFRS 412
>gi|381151975|ref|ZP_09863844.1| DNA/RNA helicase, superfamily II [Methylomicrobium album BG8]
gi|380883947|gb|EIC29824.1| DNA/RNA helicase, superfamily II [Methylomicrobium album BG8]
Length = 588
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 162/432 (37%), Positives = 235/432 (54%), Gaps = 30/432 (6%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
P+ + L+ G E+ PIQA +L G D++G+A+TG GKT AF LPIL
Sbjct: 19 PVLKALEDVGYETPSPIQAQVIPFMLQGKDVLGQAQTGTGKTAAFALPIL---------- 68
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKG 237
S+ R P VLVL PTRELA QV E F Y + G +YGG Y +Q L +G
Sbjct: 69 SRIDLKQRDPQVLVLAPTRELAIQVAEAFQRYAAHLKGFHVLPIYGGQDYSSQLRHLGRG 128
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
VV+GTPGR+ DH+ RG + L +L VLDEADEMLRMGF++DVE IL + + QT
Sbjct: 129 AHVVVGTPGRVMDHMRRGTLKLENLSTLVLDEADEMLRMGFIDDVEWILEQTPENR--QT 186
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P ++ I+ ++L ++ V ++ N+R S + + I+
Sbjct: 187 ALFSATMPPPIRKIAQEYLTDPEQVTIKVTT---ASAENIRQRYWVVSGLHKLDALTRIL 243
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
+ G IIF TK + +LA+ L A A++GD+ Q+ RE +A +SGK L
Sbjct: 244 EAETFDG-MIIFVRTKTATVELAERLEARGFSAAAINGDMSQALRERAIANLKSGKLDIL 302
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSK 472
+AT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG TG A++ PR + +
Sbjct: 303 IATDVAARGLDVDRITHVVNYDIPYDTESYVHRIGRTGRAGRTGDAILFVAPRERKLLGN 362
Query: 473 IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSV----IPAFKSAAEELLNNSGL 528
IE+ + K E + P I A Q++D++ + + E+ +
Sbjct: 363 IEKATKQKVEQMELPSTEVINNK---RIARFKQQITDTLAAEELSFYSQLIEQYQQEHNV 419
Query: 529 SAAELLAKALAK 540
SA E +A ALAK
Sbjct: 420 SALE-IASALAK 430
>gi|315445551|ref|YP_004078430.1| DEAD/DEAH box helicase [Mycobacterium gilvum Spyr1]
gi|315263854|gb|ADU00596.1| DNA/RNA helicase, superfamily II [Mycobacterium gilvum Spyr1]
Length = 505
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 155/384 (40%), Positives = 219/384 (57%), Gaps = 26/384 (6%)
Query: 105 SEHPNAV-SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
+ HPN ++ + + L GIE F IQ +T + L G DL+G+ARTG GKT AF
Sbjct: 5 TTHPNPTFAQLGVRDEIVRALAENGIEHAFAIQELTLPLALAGDDLIGQARTGMGKTFAF 64
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED------FDVYGGAVGLT 217
+P+L +T + TG RA LV++PTREL QV+ED + + LT
Sbjct: 65 GVPLLHRITTDTER--PLTGIPRA---LVVVPTRELCIQVYEDLVHASKYLMADDTRKLT 119
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
+YGG PY Q L+KG+DVV+GTPGR+ D ++G++ L L VLDEADEML +G
Sbjct: 120 VTAIYGGRPYEPQIEALQKGVDVVVGTPGRLLDLAQQGHLQLGGLNVLVLDEADEMLDLG 179
Query: 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337
F+ D+E IL ++ K Q +LFSAT+P + ++ F+ + I G +
Sbjct: 180 FLPDIERILKQI--PAKRQAMLFSATMPDPIITLARTFM-TQPTHIRAEGVQGSATHDTT 236
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGD 392
+ + +++ I++ G T+IFT TK +A ++AD L G R A+HGD
Sbjct: 237 EQFAYRAHALDKVEMVARILQAEGRGA-TMIFTRTKRTAQKVADEL-GERGFRVGAVHGD 294
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ QS RE L GFR+G LVAT+VAARG+DI+D+ +I + P D +AY+HR GRTGR
Sbjct: 295 LGQSAREKALKGFRNGDVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGR 354
Query: 453 AGNTGVAVMLYD----PRKSSVSK 472
AG TG+AV L D PR S + K
Sbjct: 355 AGKTGIAVTLVDWDELPRWSMIDK 378
>gi|145225254|ref|YP_001135932.1| DEAD/DEAH box helicase [Mycobacterium gilvum PYR-GCK]
gi|145217740|gb|ABP47144.1| DEAD/DEAH box helicase domain protein [Mycobacterium gilvum
PYR-GCK]
Length = 505
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 155/384 (40%), Positives = 219/384 (57%), Gaps = 26/384 (6%)
Query: 105 SEHPNAV-SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
+ HPN ++ + + L GIE F IQ +T + L G DL+G+ARTG GKT AF
Sbjct: 5 TTHPNPTFAQLGVRDEIVRALAENGIEHAFAIQELTLPLALAGDDLIGQARTGMGKTFAF 64
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED------FDVYGGAVGLT 217
+P+L +T + TG RA LV++PTREL QV+ED + + LT
Sbjct: 65 GVPLLHRITTDTER--PLTGIPRA---LVVVPTRELCIQVYEDLVHASKYLMADDTRKLT 119
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
+YGG PY Q L+KG+DVV+GTPGR+ D ++G++ L L VLDEADEML +G
Sbjct: 120 VTAIYGGRPYEPQIEALQKGVDVVVGTPGRLLDLAQQGHLQLGGLNVLVLDEADEMLDLG 179
Query: 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337
F+ D+E IL ++ K Q +LFSAT+P + ++ F+ + I G +
Sbjct: 180 FLPDIERILKQI--PAKRQAMLFSATMPDPIITLARTFM-TQPTHIRAEGVQGSATHDTT 236
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGD 392
+ + +++ I++ G T+IFT TK +A ++AD L G R A+HGD
Sbjct: 237 EQFAYRAHALDKVEMVARILQAEGRGA-TMIFTRTKRTAQKVADEL-GERGFRVGAVHGD 294
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ QS RE L GFR+G LVAT+VAARG+DI+D+ +I + P D +AY+HR GRTGR
Sbjct: 295 LGQSAREKALKGFRNGDVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGR 354
Query: 453 AGNTGVAVMLYD----PRKSSVSK 472
AG TG+AV L D PR S + K
Sbjct: 355 AGKTGIAVTLVDWDELPRWSMIDK 378
>gi|78486348|ref|YP_392273.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
gi|78364634|gb|ABB42599.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
Length = 574
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 161/439 (36%), Positives = 238/439 (54%), Gaps = 38/439 (8%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ + L+ G E+ PIQ ++L G D++G A+TG GKT AF LPIL
Sbjct: 12 LSAPILKTLEEIGYETPSPIQEQAIPVLLKGGDILGMAQTGTGKTAAFALPIL------- 64
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPYHAQEFKL 234
SK + P VLVL PTRELA QV E F + G GL +YGG+ Y Q L
Sbjct: 65 ---SKIDLKQKDPQVLVLAPTRELAIQVAEAFQTFSRGVKGLHVLPIYGGSEYGTQIRAL 121
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
K+G+ VV+GTPGR+ DHI++G + L +LK +LDEADEMLRMGF++DVE IL D
Sbjct: 122 KRGVHVVVGTPGRVMDHIKKGTLKLDTLKVMILDEADEMLRMGFIDDVEWILKHTPDTR- 180
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
Q LFSAT+P V I+ +L+ +++ +K ++ + S + +
Sbjct: 181 -QIALFSATMPKEVHRIANTYLQD---PTEVIIKQKAATASLIEQKYWLVSGLHKLDALT 236
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410
I+ + G IIF TK + +LA+ L A AL+GD+ Q+QRE T+ + GK
Sbjct: 237 RILEAETFDG-IIIFVRTKTATVELAEKLEARGYAAAALNGDVAQNQRERTVDQLKKGKL 295
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 470
L+AT+V ARGLD+ + +I + P D E+Y+HR GRTGRAG +G A++ PR+ +
Sbjct: 296 DILIATDVVARGLDVERISHVINYDIPYDNESYVHRIGRTGRAGRSGTAILFVAPRERRL 355
Query: 471 SK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPA--------FKSAAEE 521
+ IE + K + P +I + IT+ D ++ A ++ E
Sbjct: 356 LRSIEASTKKKITQMELPTAQEINDS-------RITRFKDKIVDAAQGTDLDFYQKMVES 408
Query: 522 LLNNSGLSAAELLAKALAK 540
+ +++ + A E +A LAK
Sbjct: 409 IESDNNIPAIE-IAAGLAK 426
>gi|385679095|ref|ZP_10053023.1| ATP-dependent RNA helicase [Amycolatopsis sp. ATCC 39116]
Length = 538
Score = 252 bits (644), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 146/345 (42%), Positives = 199/345 (57%), Gaps = 17/345 (4%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQA+T + L G DL+G+ARTG GKTL F +P+L+ + + G
Sbjct: 44 LAEAGIEHTFAIQALTLPLALAGDDLIGQARTGMGKTLGFGVPLLQRVVS--------PG 95
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
G P LV++PTREL QV D G + + + +YGG PY Q L+KG+DVV+G
Sbjct: 96 DG-TPQALVVVPTRELCLQVTRDLTDAGKHLNVRTLAIYGGRPYEQQISALRKGVDVVVG 154
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D E+ + L ++ VLDEADEML +GF+ D+E ILG V D + QT+LFSAT
Sbjct: 155 TPGRLLDLAEQKALVLGKVRALVLDEADEMLDLGFLPDIERILGMVPD--QRQTMLFSAT 212
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P + ++ FL + N+ S + ++I +++
Sbjct: 213 MPDPIIKLARTFLNRPTH-VRAEENDSSAVHERTTQFAYRAHSLDKPELIARVLQAKDR- 270
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
G T+IFT TK +A ++AD L A A+HGD+ Q RE L FRSGK LVAT+VA
Sbjct: 271 GLTMIFTRTKRTAQKVADDLAERGFAAAAVHGDLGQGAREQALRAFRSGKVDVLVATDVA 330
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
ARG+D+ DV +I + P D Y+HR GRTGRAG TGVA+ L D
Sbjct: 331 ARGIDVTDVTHVINYQTPEDESTYVHRIGRTGRAGKTGVAITLVD 375
>gi|335419959|ref|ZP_08551002.1| Cold-shock DEAD-box protein A [Salinisphaera shabanensis E1L3A]
gi|334895605|gb|EGM33773.1| Cold-shock DEAD-box protein A [Salinisphaera shabanensis E1L3A]
Length = 609
Score = 252 bits (644), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 157/398 (39%), Positives = 225/398 (56%), Gaps = 23/398 (5%)
Query: 104 ESEHPN-AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLA 162
E+E P A S +S + L G E+ PIQA T +LDG D++G+A+TG GKT A
Sbjct: 6 ENESPQVAFSDLALSDAVMAALADVGYETPSPIQAATIPPLLDGKDVLGQAQTGTGKTAA 65
Query: 163 FVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCL 221
F LPIL L + + G+ P LVL PTREL QV E F Y + G +
Sbjct: 66 FALPILSGLPD-------RGKGGKGPQALVLTPTRELTIQVAEAFQRYASHIPGFHVLPI 118
Query: 222 YGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVED 281
YGG Y Q LK+G++VV+GTPGR+ DH++RG + L +L + VLDEADEMLRMGF+ED
Sbjct: 119 YGGQGYGPQLAALKRGVNVVVGTPGRVMDHLKRGTLKLDALDWMVLDEADEMLRMGFIED 178
Query: 282 VELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRH-I 340
VE I +V LFSAT+PS ++ I+ L+ + ++ K + N+R
Sbjct: 179 VEWIFEHTPPQRQVA--LFSATMPSAIRRIAKTHLREPQ---EITIQTKTTTAINIRQRY 233
Query: 341 VLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGDIQQ 395
+ +++ + ++ I+F TK+S +LA+ L AR AL+GDI Q
Sbjct: 234 WIVGGGTSKLDALTRLLEAEPFDA-MIVFARTKKSTDELAERL-SARGYACAALNGDIVQ 291
Query: 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN 455
+QRE T+A ++G+ +VAT+VAARGLD+ + +I + P D EAY+HR GRTGRAG
Sbjct: 292 AQRERTVAKLKNGQLDIIVATDVAARGLDVERISHVINFDIPHDTEAYVHRIGRTGRAGR 351
Query: 456 TGVAVMLYDPRKSSVSK-IERESGVKFEHISAPQPADI 492
G A++ R+ + K IER + E + P A++
Sbjct: 352 EGDAILFVTMREKRLFKAIERATRQAIEPMDLPSIAEV 389
>gi|386361220|ref|YP_006059465.1| DNA/RNA helicase [Thermus thermophilus JL-18]
gi|383510247|gb|AFH39679.1| DNA/RNA helicase, superfamily II [Thermus thermophilus JL-18]
Length = 510
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 162/379 (42%), Positives = 223/379 (58%), Gaps = 22/379 (5%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L +G+ + PIQA + L+G DL+G+ARTG GKTLAF LPI E L P++
Sbjct: 14 EALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLA--PSQER-- 69
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
GR P LVL PTRELA QV + A L +YGG Y Q+ L +G D V
Sbjct: 70 ---GRKPRALVLAPTRELALQVASELASV--ATHLKVVAVYGGTGYGKQKEALLRGADAV 124
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
+ TPGR D++ +G +DLS ++ VLDEADEML MGF E+VE +L + QTLLFS
Sbjct: 125 VATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSR--QTLLFS 182
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
ATLPSW K ++ +++K + I+++ +E + +P R +V+ D++ +
Sbjct: 183 ATLPSWAKRLAERYMK-NPVLINVIKDEPVTYEEE----AVPAPVRGRLEVLSDLLYV-A 236
Query: 362 SGGRTIIFT----ETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
S R ++FT ET+E A L L A+A+HGD+ Q +RE L FR G+ LVAT+
Sbjct: 237 SPDRAMVFTRTKAETEEIAQGLLRLGHPAQAIHGDLSQGERERVLGAFRQGEVRVLVATD 296
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERE 476
VAARGLDI V L++ P EAY HRSGRTGRAG G V+LY PR + V +ER
Sbjct: 297 VAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERA 356
Query: 477 SGVKFEHISAPQPADIAKA 495
G +F+ ++ P P ++ +A
Sbjct: 357 VGRRFKRVNPPTPEEVLEA 375
>gi|378551112|ref|ZP_09826328.1| hypothetical protein CCH26_13526 [Citricoccus sp. CH26A]
Length = 578
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 142/367 (38%), Positives = 211/367 (57%), Gaps = 11/367 (2%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F + + E L KGI FPIQAMT + L G D++G+A+TG GKTL F LP+L+ +
Sbjct: 49 FNVRADMVEALAEKGITHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGLPLLQRVIG 108
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
+ + AP LV+ PTRELA QV D + +YGG Y Q +
Sbjct: 109 PDEEGFDRLAAPGAPQALVVAPTRELANQVAADITAAASKRSVRIATIYGGRAYEPQIEE 168
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L++G++VV+GTPGR+ D + + +++L +K VLDEADEML +GF+ DVE +L V +
Sbjct: 169 LQRGVEVVVGTPGRLIDLMRQRHLNLKLVKIVVLDEADEMLDLGFLPDVETLLSAVPEVR 228
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
QT+LFSAT+P V ++ +++ ++ ++R +V + +++
Sbjct: 229 --QTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEGITKKDIRQLVYRAHHMDKDELV 286
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409
++ G+TIIFT TK +A++L+D L A ++HGD+ Q RE L FR K
Sbjct: 287 ARSLQAEGR-GKTIIFTRTKRTAARLSDELEKRGFAAGSIHGDLGQGAREQALRAFRGDK 345
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----P 465
LVAT+VAARG+D++DV +I + P D + Y+HR GRTGRAGN G AV L D P
Sbjct: 346 IDVLVATDVAARGIDVDDVTHVINFQCPEDEKTYLHRVGRTGRAGNKGTAVTLVDWEDMP 405
Query: 466 RKSSVSK 472
R + ++K
Sbjct: 406 RWTLINK 412
>gi|315443280|ref|YP_004076159.1| DNA/RNA helicase [Mycobacterium gilvum Spyr1]
gi|315261583|gb|ADT98324.1| DNA/RNA helicase, superfamily II [Mycobacterium gilvum Spyr1]
Length = 561
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 160/418 (38%), Positives = 230/418 (55%), Gaps = 23/418 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES PIQA T +L+GSD+VG A+TG GKT AF +PIL SK R
Sbjct: 32 GYESPSPIQAATIPAMLEGSDVVGLAQTGTGKTAAFAIPIL----------SKIDTESRN 81
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGR 247
LVL PTRELA QV E F YG + + +YGG+ Y Q LK+G VV+GTPGR
Sbjct: 82 TQALVLAPTRELALQVAEAFGRYGAQLRVNVLPIYGGSSYVPQLAGLKRGAQVVVGTPGR 141
Query: 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSW 307
+ DH+E+G++DLS L + VLDEADEML+MGF EDVE IL + +V LFSAT+P
Sbjct: 142 VIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYKQVA--LFSATMPPA 199
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTI 367
+K I+ K+L +++ K + + N+ S + + ++ G I
Sbjct: 200 IKKITAKYLHD---PVEVTVKSKTQTAENITQRYFLVSYPRKMDALTRLLET-EQGDAMI 255
Query: 368 IFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423
+F TK++ ++A+ L A A++GDI Q+ RE T+ + G LVAT+VAARGL
Sbjct: 256 VFVRTKQATEEVAEKLRARGFAASAINGDIPQAVRERTITQLKDGTIDILVATDVAARGL 315
Query: 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFE 482
D+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR + + IER + K
Sbjct: 316 DVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLGAIERVTRQKLV 375
Query: 483 HISAPQPADIAKAAGVEAAETITQVSDSV-IPAFKSAAEELLNNSGLSAAELLAKALA 539
P D+ + + ++IT D I F++ E + + A+ +A ALA
Sbjct: 376 ESELPSVDDVNEKRVAKFRDSITDALDKPGIDLFRALVEGYERDHDVPMAD-IAAALA 432
>gi|311743785|ref|ZP_07717591.1| ATP-dependent RNA helicase DeaD [Aeromicrobium marinum DSM 15272]
gi|311312915|gb|EFQ82826.1| ATP-dependent RNA helicase DeaD [Aeromicrobium marinum DSM 15272]
Length = 470
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 147/354 (41%), Positives = 201/354 (56%), Gaps = 18/354 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+ + L GIE+ FPIQ MT + L G+DL+G+ARTG GKTLAF +P+++ T A
Sbjct: 4 IADALTGHGIETPFPIQEMTLSVALMGTDLIGQARTGTGKTLAFAIPVIQR-----TVAP 58
Query: 180 KKTGYGRA-----PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
YG P L++ PTRELA QV D + G + +YGG PY Q L
Sbjct: 59 HDPEYGELAAPGKPQALIIAPTRELAIQVAGDVAMASKLRGTRNLTIYGGVPYEGQLDAL 118
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
+ G+D+VIGTPGRI D R +DLS +K VLDEADEML +GF+ DVE IL K +
Sbjct: 119 ESGVDIVIGTPGRILDLANRRALDLSHVKSMVLDEADEMLDLGFLPDVEAILAKTPELR- 177
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT+LFSAT+P + ++ K ++ I +E + V + +++
Sbjct: 178 -QTMLFSATMPGAIVGLARKHMRH-PMNIRAESSEDTQMVPATAQFVWQAHDMDKPEIVS 235
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKF 410
I++ R IIFT TK +A ++AD L A LHGD+ Q+ RE L FR GK
Sbjct: 236 RILQA-DDVARVIIFTRTKRTAQRVADELVDRGFPASPLHGDMAQTAREKALQRFRDGKI 294
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
TLVAT+VAARG+D+ ++ +I P D + Y+HR GRTGRAG +G+AV D
Sbjct: 295 NTLVATDVAARGIDVANISHVINYNCPEDDKTYVHRIGRTGRAGASGIAVTFVD 348
>gi|404444837|ref|ZP_11009988.1| DNA/RNA helicase [Mycobacterium vaccae ATCC 25954]
gi|403653206|gb|EJZ08205.1| DNA/RNA helicase [Mycobacterium vaccae ATCC 25954]
Length = 562
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 160/418 (38%), Positives = 230/418 (55%), Gaps = 23/418 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES PIQA T +L GSD+VG A+TG GKT AF +PIL SK R
Sbjct: 32 GYESPSPIQAATIPAILAGSDVVGLAQTGTGKTAAFAIPIL----------SKIDTDSRT 81
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGR 247
LVL PTRELA QV E F YG + + +YGG+ Y Q LK+G VV+GTPGR
Sbjct: 82 TQALVLAPTRELALQVAEAFGRYGAKLRVNVLPIYGGSSYVPQLAGLKRGAQVVVGTPGR 141
Query: 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSW 307
+ DH+E+G++DLS L + VLDEADEML+MGF EDVE IL + +V LFSAT+P
Sbjct: 142 VIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYKQVA--LFSATMPPA 199
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTI 367
+K I+ K+L +++ K + + N+ S + + ++ G I
Sbjct: 200 IKKITAKYLHD---PVEVTVKSKTQTAENITQRYYQVSYPRKMDALTRLLET-EQGDAMI 255
Query: 368 IFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423
+F TK++ ++A+ L A A++GDI Q+ RE T++ + G LVAT+VAARGL
Sbjct: 256 VFVRTKQATEEVAEKLRARGFAAAAINGDIPQAVRERTISQLKDGTIDILVATDVAARGL 315
Query: 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFE 482
D+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR + + IER + K
Sbjct: 316 DVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLGAIERVTRQKLV 375
Query: 483 HISAPQPADIAKAAGVEAAETITQVSDSV-IPAFKSAAEELLNNSGLSAAELLAKALA 539
P D+ + + ++IT D I F++ E + + A+ +A ALA
Sbjct: 376 ESELPSVDDVNEKRVAKFRDSITDALDKPGIDLFRTLVEGYERDHDVPMAD-IAAALA 432
>gi|312140644|ref|YP_004007980.1| dead/deah box helicase [Rhodococcus equi 103S]
gi|325675727|ref|ZP_08155411.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
gi|311889983|emb|CBH49301.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
gi|325553698|gb|EGD23376.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
Length = 545
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 152/382 (39%), Positives = 213/382 (55%), Gaps = 20/382 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
E+ P + + + L GIE F IQ +T + L G DL+G+ARTG GKT F
Sbjct: 36 ETHTPPTFGELGVRDEIVKALAEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGF 95
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD-----VYGGAVGLTS 218
+P+L ++ T S T P LV++PTREL QV +D + + G L
Sbjct: 96 GIPLLHRVS---TADSGTTPLDGTPRALVIVPTRELCVQVTQDLENASKYLKSGEKKLEV 152
Query: 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF 278
+YGG PY Q L+KG+DVV+GTPGR+ D +G++ L + VLDEADEML +GF
Sbjct: 153 LSIYGGRPYEQQIDALRKGVDVVVGTPGRLLDLANQGHLILGKVGVLVLDEADEMLDLGF 212
Query: 279 VEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR 338
+ D+E ILG V D K QT+LFSAT+P + ++ FL + +
Sbjct: 213 LPDIERILGMVPD--KRQTMLFSATMPGPIITLARTFLTQPTHIRAEEADSSAVHERTTQ 270
Query: 339 HIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQ 394
HI + +++++ +++ G T+IFT TK +A ++AD L A+HGD+
Sbjct: 271 HIYR-AHALDKAEMVARVLQADGRGA-TMIFTRTKRTAQKVADDLNERGFNVGAVHGDLG 328
Query: 395 QSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
Q RE LAGFRSGK LVAT+VAARG+DI+DV +I + P D + Y+HR GRTGRAG
Sbjct: 329 QIAREKALAGFRSGKVDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAG 388
Query: 455 NTGVAVMLYD----PRKSSVSK 472
TG+A+ L D PR + K
Sbjct: 389 RTGIAITLVDWDDVPRWQLIDK 410
>gi|392417671|ref|YP_006454276.1| DNA/RNA helicase, superfamily II [Mycobacterium chubuense NBB4]
gi|390617447|gb|AFM18597.1| DNA/RNA helicase, superfamily II [Mycobacterium chubuense NBB4]
Length = 563
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 145/369 (39%), Positives = 212/369 (57%), Gaps = 24/369 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ ++ G ES PIQA T +L GSD+VG A+TG GKT AF +PIL SK
Sbjct: 26 QAVRDVGYESPSPIQAATIPAMLAGSDVVGLAQTGTGKTAAFAIPIL----------SKI 75
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
R LVL PTRELA QV E F YG + + +YGG+ Y Q LK+G VV
Sbjct: 76 DTSSRTTQALVLAPTRELALQVAEAFSRYGAHLQVNVLPVYGGSSYGPQLAGLKRGAQVV 135
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
+GTPGR+ DH+E+G +D+S L + VLDEADEML+MGF EDVE IL + +V LFS
Sbjct: 136 VGTPGRVIDHLEKGTLDVSHLDYMVLDEADEMLQMGFAEDVERILADTPEYKQVA--LFS 193
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
AT+P ++ I+ K+L +++ K + + N+ + S + + ++
Sbjct: 194 ATMPPGIRKITAKYLHD---PVEVTVKSKSQTAENITQRYIQVSHQRKMDALTRLLEV-E 249
Query: 362 SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
G I+F TK++ ++A+ L A A++GDI Q+ RE T+ + G LVAT+
Sbjct: 250 QGDAMIVFVRTKQATEEVAEKLKARGFAAAAINGDIPQAVRERTINQLKDGSIDILVATD 309
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK----SSVSKI 473
VAARGLD+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ +S+ ++
Sbjct: 310 VAARGLDVERISHVVNYDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLNSIERV 369
Query: 474 ERESGVKFE 482
R+ V+ E
Sbjct: 370 TRQKLVESE 378
>gi|441523228|ref|ZP_21004858.1| ATP-dependent RNA helicase DeaD [Gordonia sihwensis NBRC 108236]
gi|441457193|dbj|GAC62819.1| ATP-dependent RNA helicase DeaD [Gordonia sihwensis NBRC 108236]
Length = 596
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 153/389 (39%), Positives = 219/389 (56%), Gaps = 22/389 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G E+ PIQA T +++G D+VG A+TG GKT AF LPIL L
Sbjct: 33 LDDVGYETPSPIQAATIPPLMEGRDVVGLAQTGTGKTAAFALPILTRLDTS--------- 83
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVI 242
R P LVL PTRELA QV E F Y + + +YGG Y Q L++G V++
Sbjct: 84 -ARKPQALVLAPTRELALQVAEAFGSYSTYLPEVKVLPIYGGQSYGIQLSGLRRGAQVIV 142
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+++G +DLS L+F VLDEADEML MGF EDVE IL D +V LFSA
Sbjct: 143 GTPGRVIDHLDKGTLDLSQLEFLVLDEADEMLTMGFAEDVERILADTPDQKQVA--LFSA 200
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ + ++ K+L + ++ V N K + N+ L S + + ++
Sbjct: 201 TMPAAIGRLARKYLNNPQEVT--VKN-KTATAQNITQKYLQVSHQRKLDALTRVLEVEPF 257
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G I+F TK + +LA+ L A A++GD+ Q+QRE T+ + G LVAT+V
Sbjct: 258 DG-MIVFVRTKSATEELAEKLRARGLSAMAINGDMVQAQRERTINQLKDGSLDILVATDV 316
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERES 477
AARGLD++ + ++ + P DVE+Y+HR GRTGRAG +G A++ PR+ + + IER +
Sbjct: 317 AARGLDVDRISHVVNYDIPHDVESYVHRIGRTGRAGRSGTALLFVSPRERHLLRSIERHT 376
Query: 478 GVKFEHISAPQPADIAKAAGVEAAETITQ 506
E I P D+ + A++IT+
Sbjct: 377 RQDLEEIDLPSVDDVNAQRVAKFADSITE 405
>gi|255324480|ref|ZP_05365597.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
SK141]
gi|255298386|gb|EET77686.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
SK141]
Length = 619
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 164/470 (34%), Positives = 253/470 (53%), Gaps = 27/470 (5%)
Query: 78 KSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVP--LREKLKSKGIESLFPI 135
S+ K + A + G E Q+ S + N+ + +P + E + G PI
Sbjct: 25 NSQGVTKDTRAANTSEDTGAESQD---SANDNSQGFAHLGLPEKILEAVAKVGFTKPSPI 81
Query: 136 QAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195
Q T ++++G D+VG A+TG GKT AF LP+L + TKA R P LVL P
Sbjct: 82 QEETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQID---TKA-------RHPQALVLAP 131
Query: 196 TRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
TRELA QV + F + ++ G+ +YGG Y Q L++G V++GTPGR+ DH+E+
Sbjct: 132 TRELALQVADSFQSFAESLKGVEVLPIYGGQAYGIQLSGLRRGAQVIVGTPGRVIDHLEK 191
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTK 314
G++DLS L+F VLDEADEML MGF EDVE IL D + Q LFSAT+P+ ++ +S +
Sbjct: 192 GSLDLSQLQFLVLDEADEMLNMGFQEDVERILEDTPD--RKQVALFSATMPNAIRRLSKQ 249
Query: 315 FLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKE 374
+L + + V +E+ + + N+ L A+ I+ + I+F TK
Sbjct: 250 YLDNPAEVT--VKSER-RTNDNITQRFLLIPHRAKMDAFTRILEVINYDA-IIVFCRTKH 305
Query: 375 SASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQL 430
++A+ L A A++GDI Q+QRE T+ + G+ LVAT+VAARGLD+ +
Sbjct: 306 ETEEVAETLRDRGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITH 365
Query: 431 IIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQP 489
++ + P D E+Y+HR GRTGRAG +G A++ PR + + IER + + E + P
Sbjct: 366 VVNFDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERVTNARLEEMDLPSV 425
Query: 490 ADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALA 539
++ + + A++IT D+ F + +A + +A ALA
Sbjct: 426 DEVNEKRKEKFAQSITNSMDNKQADFFRTLVRKYSEDNNAAMDDIAAALA 475
>gi|403527959|ref|YP_006662846.1| DEAD/DEAH box helicase [Arthrobacter sp. Rue61a]
gi|403230386|gb|AFR29808.1| DEAD-box ATP-dependent RNA helicase CshA [Arthrobacter sp. Rue61a]
Length = 570
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 145/390 (37%), Positives = 216/390 (55%), Gaps = 11/390 (2%)
Query: 91 VEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLV 150
+EPE + E + + F + + E L GI FPIQAMT + L G D++
Sbjct: 19 IEPEETIISDETPHEIEEKSFADFNVRADIVESLADAGITHPFPIQAMTLPVALSGHDII 78
Query: 151 GRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210
G+A+TG GKTL F +P L+ + K AP LV++PTRELA QV D
Sbjct: 79 GQAKTGTGKTLGFGIPALQRVAGRDDAGYAKLAVPGAPQALVIVPTRELAVQVANDLQAA 138
Query: 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270
+YGG Y Q L+KG+++V+GTPGR+ D ++ ++ L ++K +LDEA
Sbjct: 139 SRKRNARIATIYGGRAYEPQIDALQKGVEIVVGTPGRLIDLYKQKHLSLKNVKMVILDEA 198
Query: 271 DEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK 330
DEML +GF+ DVE ++ QTLLFSAT+P V ++ +++ N++
Sbjct: 199 DEMLDLGFLPDVETLIAGTPAVR--QTLLFSATMPGPVIAMARRYMTQPTHIRAADPNDE 256
Query: 331 MKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GA 386
++R ++ S +++V+ I++ GRTIIFT+TK +A+++A+ L A
Sbjct: 257 GLTKRDIRQLIYRAHSMDKTEVVARILQARGR-GRTIIFTKTKRTAAKVAEELVDRGFAA 315
Query: 387 RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHR 446
A+HGD+ Q RE L FR+ K LVAT+VAARG+D++DV +I + D + Y+HR
Sbjct: 316 AAIHGDLGQGAREQALRAFRNNKVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHR 375
Query: 447 SGRTGRAGNTGVAVMLYD----PRKSSVSK 472
GRTGRAGN G AV D PR ++K
Sbjct: 376 VGRTGRAGNKGTAVTFVDWDDMPRWGLINK 405
>gi|119962035|ref|YP_948481.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
gi|119948894|gb|ABM07805.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
Length = 566
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 145/390 (37%), Positives = 216/390 (55%), Gaps = 11/390 (2%)
Query: 91 VEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLV 150
+EPE + E + + F + + E L GI FPIQAMT + L G D++
Sbjct: 19 IEPEETIISDETPHEIEEKSFADFNVRADIVESLADAGITHPFPIQAMTLPVALSGHDII 78
Query: 151 GRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210
G+A+TG GKTL F +P L+ + K AP LV++PTRELA QV D
Sbjct: 79 GQAKTGTGKTLGFGIPALQRVAGRDDAGYAKLAVPGAPQALVIVPTRELAVQVANDLQAA 138
Query: 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270
+YGG Y Q L+KG+++V+GTPGR+ D ++ ++ L ++K +LDEA
Sbjct: 139 SRKRNARIATIYGGRAYEPQIDALQKGVEIVVGTPGRLIDLYKQKHLSLKNVKMVILDEA 198
Query: 271 DEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK 330
DEML +GF+ DVE ++ QTLLFSAT+P V ++ +++ N++
Sbjct: 199 DEMLDLGFLPDVETLIAGTPAVR--QTLLFSATMPGPVIAMARRYMTQPTHIRAADPNDE 256
Query: 331 MKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GA 386
++R ++ S +++V+ I++ GRTIIFT+TK +A+++A+ L A
Sbjct: 257 GLTKRDIRQLIYRAHSMDKTEVVARILQARGR-GRTIIFTKTKRTAAKVAEELVDRGFAA 315
Query: 387 RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHR 446
A+HGD+ Q RE L FR+ K LVAT+VAARG+D++DV +I + D + Y+HR
Sbjct: 316 AAIHGDLGQGAREQALRAFRNNKVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHR 375
Query: 447 SGRTGRAGNTGVAVMLYD----PRKSSVSK 472
GRTGRAGN G AV D PR ++K
Sbjct: 376 VGRTGRAGNKGTAVTFVDWDDMPRWGLINK 405
>gi|441515068|ref|ZP_20996877.1| ATP-dependent RNA helicase DeaD [Gordonia amicalis NBRC 100051]
gi|441450162|dbj|GAC54838.1| ATP-dependent RNA helicase DeaD [Gordonia amicalis NBRC 100051]
Length = 589
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 148/393 (37%), Positives = 220/393 (55%), Gaps = 22/393 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+R + G E+ PIQA T ++DG D+VG A+TG GKT AF +PIL L
Sbjct: 34 VRAAITDVGYETPSPIQAATIPPLMDGRDVVGLAQTGTGKTAAFAIPILSRLDTS----- 88
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGI 238
R P L+L PTRELA QV E F Y + + +YGG Y Q L++G
Sbjct: 89 -----ARTPQALILAPTRELALQVSEAFGRYSAHMPEVKVLPIYGGQSYGVQLAGLRRGA 143
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
V++GTPGR+ DH+++ +D+S L+F VLDEADEML MGF EDVE IL + D +V
Sbjct: 144 QVIVGTPGRVIDHLDKKTLDISGLEFLVLDEADEMLTMGFAEDVERILAETPDTKQVA-- 201
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+PS ++ ++ ++LKS + ++ K + N+ L S + + +
Sbjct: 202 LFSATMPSSIRRLAQRYLKSPQ---EITVKSKTATAQNITQRYLQVSHQRKLDALTRFLE 258
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
I+F TK++ +LA+ L A A++GD+ Q+QRE T+ ++G LV
Sbjct: 259 VEEFDA-MIVFVRTKQATEELAEKLRSRGLSAVAINGDLAQAQRERTINQLKNGSIDILV 317
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-I 473
AT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + + I
Sbjct: 318 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALLFVSPRERHLLRAI 377
Query: 474 ERESGVKFEHISAPQPADIAKAAGVEAAETITQ 506
ER + + I P D+ + E+ITQ
Sbjct: 378 ERATRQELTEIGLPSVDDVNAQRVAKFGESITQ 410
>gi|114046038|ref|YP_736588.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-7]
gi|113887480|gb|ABI41531.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
Length = 622
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 155/421 (36%), Positives = 232/421 (55%), Gaps = 27/421 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G E PIQ+ + D ++ G D++G+A+TG GKT AF LP+L +T+
Sbjct: 21 LDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTSQAV------- 73
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P +LVL PTRELA QV E F Y + G +YGG H Q LK+G V++
Sbjct: 74 ----PQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLNALKRGPQVIV 129
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+ RG + L +L+ VLDEADEML+MGF++D+E IL + Q LFSA
Sbjct: 130 GTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQR--QLALFSA 187
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P +K ++ K LK D I + + S R + + S + + + ++ ++
Sbjct: 188 TMPEQIKRVANKHLK-DATNISIAASHTTVDSIEQRFVQV--SQHNKLEALVRVLEVENT 244
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G IIF T+ S +LA+ L + LHGD+ Q RE + ++GK L+AT+V
Sbjct: 245 EG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIATDV 303
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERES 477
AARGLD+ + ++ + P D EAY+HR GRTGRAG TG+A++ R+ + + IER +
Sbjct: 304 AARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERAT 363
Query: 478 GVKFEHISAPQPADIAK----AAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAEL 533
+ + P P +A+ G + A+T+TQ D + A ++L ++ L AA L
Sbjct: 364 NSRISPMKVPSPETVAERRLSRLGEQLAQTMTQDLDFMREAVAQLCQQLEVDTDLLAAAL 423
Query: 534 L 534
L
Sbjct: 424 L 424
>gi|311740664|ref|ZP_07714491.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311304184|gb|EFQ80260.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 619
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 164/470 (34%), Positives = 253/470 (53%), Gaps = 27/470 (5%)
Query: 78 KSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVP--LREKLKSKGIESLFPI 135
S+ K + A + G E Q+ S + N+ + +P + E + G PI
Sbjct: 25 NSQGVTKDTRAANTSEDTGAESQD---SANDNSQGFAHLGLPEKILEAVAKVGFTKPSPI 81
Query: 136 QAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195
Q T ++++G D+VG A+TG GKT AF LP+L + TKA R P LVL P
Sbjct: 82 QEETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQID---TKA-------RHPQALVLAP 131
Query: 196 TRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
TRELA QV + F + ++ G+ +YGG Y Q L++G V++GTPGR+ DH+E+
Sbjct: 132 TRELALQVADSFQSFAESLKGVEVLPIYGGQAYGIQLSGLRRGAQVIVGTPGRVIDHLEK 191
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTK 314
G++DLS L+F VLDEADEML MGF EDVE IL D + Q LFSAT+P+ ++ +S +
Sbjct: 192 GSLDLSQLQFLVLDEADEMLNMGFQEDVERILEDTPD--RKQVALFSATMPNAIRRLSKQ 249
Query: 315 FLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKE 374
+L + + V +E+ + + N+ L A+ I+ + I+F TK
Sbjct: 250 YLDNPAEVT--VKSER-RTNDNITQRFLLIPHRAKMDAFTRILEVINYDA-IIVFCRTKH 305
Query: 375 SASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQL 430
++A+ L A A++GDI Q+QRE T+ + G+ LVAT+VAARGLD+ +
Sbjct: 306 ETEEVAETLRDRGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITH 365
Query: 431 IIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQP 489
++ + P D E+Y+HR GRTGRAG +G A++ PR + + IER + + E + P
Sbjct: 366 VVNFDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERVTNARLEEMDLPSV 425
Query: 490 ADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALA 539
++ + + A++IT D+ F + +A + +A ALA
Sbjct: 426 DEVNEKRKEKFAQSITNSMDNKQADFFRTLVRKYSEDNNAAMDDIAAALA 475
>gi|381395882|ref|ZP_09921576.1| ATP-dependent RNA helicase DeaD [Glaciecola punicea DSM 14233 =
ACAM 611]
gi|379328447|dbj|GAB56709.1| ATP-dependent RNA helicase DeaD [Glaciecola punicea DSM 14233 =
ACAM 611]
Length = 584
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 163/428 (38%), Positives = 239/428 (55%), Gaps = 24/428 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L + ++ G E PIQA + ++L+G DL+G+A+TG GKT AF LP+L ++ P +A
Sbjct: 18 LLQAVEKVGYEKPSPIQAKSIPLLLEGHDLLGQAQTGTGKTAAFALPMLANID--PDEAY 75
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGI 238
+ +LVL PTRELA QV E F VY + + +YGG+ Y Q +LK+G+
Sbjct: 76 TQ--------LLVLAPTRELAIQVAEAFQVYASFSKKIRVLPVYGGSSYDNQIRQLKRGV 127
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
VV+GTPGRI DHI+R + L L+F VLDEADEMLRMGF++DVELIL QT
Sbjct: 128 QVVVGTPGRIIDHIKRKTLKLDKLRFLVLDEADEMLRMGFIDDVELILSHAPSTR--QTA 185
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P +K IS K+L + K + K+ ++ +R + + + + + I+
Sbjct: 186 LFSATMPDQIKKISQKYLNNPKH---VKIESKVSTASTIRQRYVQVAGHHKLETLTRILE 242
Query: 359 CYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G I+F TK + +LA+ L AL+GDI Q+ RE T+ + GK LV
Sbjct: 243 IEEFEG-VIVFVRTKTATLELAEKLSARGYDVEALNGDIAQAARERTVERLKQGKIDILV 301
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKI 473
AT+VAARGLD+ V +I + P D E+Y+HR GRTGRAG G A++ R K + I
Sbjct: 302 ATDVAARGLDVERVSHVINYDVPHDTESYVHRVGRTGRAGRKGDAILFISHREKRMLFAI 361
Query: 474 ERESGVKFEHISAPQPADIAKA-AGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAE 532
ER + + + P ++ ++ G I ++ I ++ E ++ S S E
Sbjct: 362 ERATKQEITMMEIPSIGELNESRLGRFKKSVIDALAHESIESYMPVIEAIIRESEAS-PE 420
Query: 533 LLAKALAK 540
++ ALAK
Sbjct: 421 MVMAALAK 428
>gi|227357070|ref|ZP_03841440.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Proteus
mirabilis ATCC 29906]
gi|425070180|ref|ZP_18473294.1| cold-shock DEAD box protein A [Proteus mirabilis WGLW6]
gi|425074004|ref|ZP_18477109.1| cold-shock DEAD box protein A [Proteus mirabilis WGLW4]
gi|227162762|gb|EEI47725.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Proteus
mirabilis ATCC 29906]
gi|404594415|gb|EKA94997.1| cold-shock DEAD box protein A [Proteus mirabilis WGLW4]
gi|404595696|gb|EKA96232.1| cold-shock DEAD box protein A [Proteus mirabilis WGLW6]
Length = 611
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 166/452 (36%), Positives = 238/452 (52%), Gaps = 70/452 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ L G E PIQ +LDG+D++G A+TG GKT AF LP+L +L
Sbjct: 14 LSAPILTALNDLGYEKPSPIQQQCIPFLLDGNDVLGMAQTGSGKTAAFSLPLLHNLDESL 73
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHE---DFDVYGGAVGLTSCCLYGGAPYHAQEF 232
+AP +LVL PTRELA QV E DF + V + LYGG Y Q
Sbjct: 74 ----------KAPQILVLAPTRELAVQVAEAIEDFSKHLPKVNV--VALYGGQRYDVQLR 121
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G VV+GTPGR+ DH+ RG +DLS LK VLDEADEMLRMGF+EDVE IL K+
Sbjct: 122 ALRQGPQVVVGTPGRLLDHLNRGTLDLSKLKGLVLDEADEMLRMGFIEDVENILSKIPAE 181
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QT LFSAT+P ++ I+ +F+ K+ ++++S R
Sbjct: 182 H--QTALFSATMPEAIRRITRRFMNDPKEV-------RIQSSVTTR-------------- 218
Query: 353 IPDIIRCY--SSGGR----------------TIIFTETKESASQLADLLP----GARALH 390
PDI + Y + G R IIF TK + ++A+ L + AL+
Sbjct: 219 -PDISQSYWMTYGARKNEALIRFLEAEDFDAAIIFVRTKNATLEVAETLERNGYNSAALN 277
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
GD+ QS RE TL ++G+ L+AT+VAARGLD++ + L++ + P D E+Y+HR GRT
Sbjct: 278 GDMNQSLREQTLERLKNGRLDILIATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRT 337
Query: 451 GRAGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSD 509
GRAG G A++ D R+ + + IER + + P I++ + A+ I Q +
Sbjct: 338 GRAGRAGRAILFVDNRERRLLRNIERTMKMSIPEVELPNAELISQRRQEKFAQQIAQQLE 397
Query: 510 S--------VIPAFKSAAEELLNNSGLSAAEL 533
+ ++P EE L+ L+A L
Sbjct: 398 TSNLDQYRALLPKLAPQGEEALDMETLAAVLL 429
>gi|197287236|ref|YP_002153108.1| ATP-dependent RNA helicase DeaD [Proteus mirabilis HI4320]
gi|194684723|emb|CAR46715.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Proteus
mirabilis HI4320]
Length = 616
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 166/452 (36%), Positives = 238/452 (52%), Gaps = 70/452 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ L G E PIQ +LDG+D++G A+TG GKT AF LP+L +L
Sbjct: 19 LSAPILTALNDLGYEKPSPIQQQCIPFLLDGNDVLGMAQTGSGKTAAFSLPLLHNLDESL 78
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHE---DFDVYGGAVGLTSCCLYGGAPYHAQEF 232
+AP +LVL PTRELA QV E DF + V + LYGG Y Q
Sbjct: 79 ----------KAPQILVLAPTRELAVQVAEAIEDFSKHLPKVNV--VALYGGQRYDVQLR 126
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G VV+GTPGR+ DH+ RG +DLS LK VLDEADEMLRMGF+EDVE IL K+
Sbjct: 127 ALRQGPQVVVGTPGRLLDHLNRGTLDLSKLKGLVLDEADEMLRMGFIEDVENILSKIPAE 186
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QT LFSAT+P ++ I+ +F+ K+ ++++S R
Sbjct: 187 H--QTALFSATMPEAIRRITRRFMNDPKEV-------RIQSSVTTR-------------- 223
Query: 353 IPDIIRCY--SSGGR----------------TIIFTETKESASQLADLLP----GARALH 390
PDI + Y + G R IIF TK + ++A+ L + AL+
Sbjct: 224 -PDISQSYWMTYGARKNEALIRFLEAEDFDAAIIFVRTKNATLEVAETLERNGYNSAALN 282
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
GD+ QS RE TL ++G+ L+AT+VAARGLD++ + L++ + P D E+Y+HR GRT
Sbjct: 283 GDMNQSLREQTLERLKNGRLDILIATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRT 342
Query: 451 GRAGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSD 509
GRAG G A++ D R+ + + IER + + P I++ + A+ I Q +
Sbjct: 343 GRAGRAGRAILFVDNRERRLLRNIERTMKMSIPEVELPNAELISQRRQEKFAQQIAQQLE 402
Query: 510 S--------VIPAFKSAAEELLNNSGLSAAEL 533
+ ++P EE L+ L+A L
Sbjct: 403 TSNLDQYRALLPKLAPQGEEALDMETLAAVLL 434
>gi|376253820|ref|YP_005142279.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
PW8]
gi|372116904|gb|AEX69374.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
PW8]
Length = 436
Score = 251 bits (642), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 146/352 (41%), Positives = 208/352 (59%), Gaps = 16/352 (4%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+ + L + G++ F IQ +T + LDG DL+G+ARTG GKT F +P+++ + + A+
Sbjct: 19 ITDALAAVGVKRTFAIQELTLPIALDGRDLIGQARTGMGKTYGFGVPLIDRVFD----AA 74
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
P LV++PTRELA QV +D + + +T +YGG PY Q +L+ G+D
Sbjct: 75 DVAELDGTPRALVVVPTRELAHQVGDDLKLLSRNIPITVATIYGGRPYEEQIAQLESGVD 134
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+GTPGR+ D +RGN+ L + VLDEADEML +GF D+E +L + + QT+L
Sbjct: 135 VVVGTPGRLIDLYQRGNLALDHVAVLVLDEADEMLDLGFFPDIEKLLAALTHPH--QTML 192
Query: 300 FSATLPSWVKHISTKFLKSDKKT-IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
FSAT+P V ++ F+ + G + AST ++ +S V I++
Sbjct: 193 FSATMPGAVVTLARTFMHHPVHIRAEDTGAAQTHASTT--QVIFQAHRMDKSAVTARILQ 250
Query: 359 CYSSGGRTIIFTETKESASQLADLLP--GAR--ALHGDIQQSQREVTLAGFRSGKFMTLV 414
G+TIIF TK +A++LAD L G R +HGD+ QS RE +L FR+GK LV
Sbjct: 251 AEGR-GKTIIFARTKRTAAELADDLAQRGFRVAGVHGDLGQSAREASLDAFRTGKAHILV 309
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML--YD 464
AT+VAARGLDI+DV +I + P D Y+H GRTGRAG+TG AV L YD
Sbjct: 310 ATDVAARGLDIDDVTHVINYQTPDDPMTYVHHIGRTGRAGHTGTAVTLVGYD 361
>gi|400975652|ref|ZP_10802883.1| ATP-dependent helicase [Salinibacterium sp. PAMC 21357]
Length = 783
Score = 251 bits (641), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 149/346 (43%), Positives = 206/346 (59%), Gaps = 18/346 (5%)
Query: 123 KLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKT 182
+L S G ES FPIQA T VL G D++GR +TG GKT+AF P++E L K
Sbjct: 412 QLASMGAESPFPIQAATIPDVLAGKDVLGRGKTGSGKTIAFGAPLVERLME--NNGGKDR 469
Query: 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
GR P L+L PTRELA+Q+ +VGL + + GG P + Q L +G+DV+I
Sbjct: 470 QMGRKPRALILAPTRELAQQIDRTIQPIARSVGLFTTTIVGGVPQYKQVAALTRGVDVII 529
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
TPGRI+D IE+G +DLS +K VLDEAD M +GF+E V+ IL + + Q LLFSA
Sbjct: 530 ATPGRIEDLIEQGRLDLSQVKVTVLDEADHMCDLGFLEPVQRILRETSEGG--QKLLFSA 587
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
TL V + +FL D ++ G + +AS+ + H VL + II+ S+
Sbjct: 588 TLDKGVATLVKEFL-VDPAVHEVAGED--QASSTIDHKVLLIEQRDKRA----IIKQLSA 640
Query: 363 G-GRTIIFTETKESASQLADLL-----PGARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
G G+T++FT T+ A ++A+ L P A +LHGD+ QS+R L SGK LVAT
Sbjct: 641 GTGKTLVFTRTRAFAEEMAEFLSMGGTP-ATSLHGDLNQSRRTRNLQMLTSGKVNVLVAT 699
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
+VAARG+ ++D+ L+IQ + P + + Y+HRSGRTGRAG G V L
Sbjct: 700 DVAARGIHVDDISLVIQADAPEEYKTYLHRSGRTGRAGKAGTVVTL 745
>gi|238897556|ref|YP_002923235.1| cold-shock DeaD box ATP-dependent RNA helicase [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
gi|229465313|gb|ACQ67087.1| cold-shock DeaD box ATP-dependent RNA helicase [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
Length = 598
Score = 251 bits (641), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 166/446 (37%), Positives = 248/446 (55%), Gaps = 24/446 (5%)
Query: 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVL 165
E P + S+ +S + L G E PIQ +L+GSD++G A+TG GKT AF L
Sbjct: 4 ELPISFSKLGLSPSILSALTDLGYEKPSPIQLECIPHLLNGSDVLGMAQTGSGKTAAFGL 63
Query: 166 PILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGG 224
P+L+++ K K AP +LVL PTRELA QV + + + G+ LYGG
Sbjct: 64 PLLQNI-----KPDIK-----APQILVLAPTRELAVQVAQALTNFSKYMKGINVLALYGG 113
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
PYH Q L++G +V+GTPGR+ DH++RG ++LSSL VLDEADEMLRMGF+EDVE
Sbjct: 114 QPYHVQLKALRQGPQIVVGTPGRLLDHLKRGTLNLSSLTGLVLDEADEMLRMGFIEDVEN 173
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344
IL K+ + QT LFSAT+P ++ I+ +F+K + K + + N K N + P
Sbjct: 174 ILAKIPAEH--QTALFSATMPDAIRRITRRFMK-EPKEVRIHSNVTTKPDINQSY--WPV 228
Query: 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREV 400
++Q + + IIF TK + ++A+ L + AL+GD+ QS RE
Sbjct: 229 FGMRKNQALVRFLEVEDFDA-AIIFVRTKNATLEVAEALEDSGYNSAALNGDMNQSLREQ 287
Query: 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV 460
TL + G+ L+AT+VAARGLD++ + L++ + P D E+Y+HR GRTGRAG G A+
Sbjct: 288 TLERLKDGRLDILIATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRAL 347
Query: 461 MLYDPRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKSA 518
+ + R+ + K IER I P+ +++ + A T+ Q + S + +K+
Sbjct: 348 LFVENRERRLLKNIERVIKQPIPEIQLPKAELLSQRRLEKFAATVRQHIESSDLEMYKTL 407
Query: 519 AEELLNNSGLSAAELLAKALAKAVVS 544
++L E++A AL K S
Sbjct: 408 LKKLRPEEPFD-LEMIAAALLKMAQS 432
>gi|386774462|ref|ZP_10096840.1| DNA/RNA helicase, superfamily II [Brachybacterium paraconglomeratum
LC44]
Length = 596
Score = 251 bits (641), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 214/372 (57%), Gaps = 12/372 (3%)
Query: 99 EQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQG 158
EQ G ++ + F + + + L +KGI + FPIQA+T + L G D++G+A+TG G
Sbjct: 8 EQSSGTTDPQQTFADFDVRADIVKALAAKGITTPFPIQALTLPVALRGRDIIGQAKTGTG 67
Query: 159 KTLAFVLPILES--LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGL 216
KTL F +P+L+S P + G P LV+LPTRELA QV D + +
Sbjct: 68 KTLGFGIPLLQSSVAPGEPNPDDRPIGK---PQALVVLPTRELAVQVAHDLETASAKRPI 124
Query: 217 TSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM 276
+YGG Y Q L+KG++VV+GTPGR+ D + + ++DLS ++ VLDEADEML +
Sbjct: 125 RILTVYGGRAYEPQIEALEKGVEVVVGTPGRLIDLMRQKHLDLSQVRTAVLDEADEMLDL 184
Query: 277 GFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN 336
GF+ED+E +L V AN+ QT+LFSAT+P + ++ +F+K ++ + +
Sbjct: 185 GFLEDIEKLLQAVP-ANR-QTMLFSATMPGPIMALARRFMKQPTHIRAHDPGDESRTKAD 242
Query: 337 VRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQ----LADLLPGARALHGD 392
++ +V + +V+ +++ G +IIF TK A + LAD A LHGD
Sbjct: 243 IKQVVYRAHQLDKIEVMARVLQARGR-GLSIIFMRTKRQADRVAGDLADRGFAAAPLHGD 301
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q RE L FR+GK LVAT+VAARG+D+ DV ++ P D + Y+HR+GRTGR
Sbjct: 302 LGQGAREQALRAFRNGKIDVLVATDVAARGIDVTDVTHVVNWNCPDDDKTYLHRTGRTGR 361
Query: 453 AGNTGVAVMLYD 464
AG G A+ D
Sbjct: 362 AGKKGTAITFVD 373
>gi|220913497|ref|YP_002488806.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6]
gi|219860375|gb|ACL40717.1| DEAD/DEAH box helicase domain protein [Arthrobacter
chlorophenolicus A6]
Length = 694
Score = 251 bits (641), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 153/375 (40%), Positives = 210/375 (56%), Gaps = 26/375 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT-----NGPTKA 178
L+ G E PIQA T ++L+G D+VG A+TG GKT AF +P L L NGP++
Sbjct: 65 LQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRLAELHDLNGPSRK 124
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKG 237
++ LVL PTRELA QV E F Y + T +YGG+ Y Q L++G
Sbjct: 125 TQ---------ALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQLAGLRRG 175
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
VV+GTPGR+ DHI +G++DLS L++ VLDEADEMLRMGF EDVE I + + +V
Sbjct: 176 AQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQQTPEDRQV-- 233
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P ++ +S ++L +D I + K TN+R L + + I+
Sbjct: 234 ALFSATMPGQIRRMSKQYL-NDPAEISV--KTKTSTGTNIRQRYLQIMGPQKLDAMTRIL 290
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
G I F TK + LAD L A A++GDI Q QRE T+ + G+ L
Sbjct: 291 EVEEFDG-VIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRIDIL 349
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSK 472
VAT+VAARGLD+ + +I + P D E+Y+HR GRTGRAG G A++ PR K +
Sbjct: 350 VATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRNGDAILFMTPREKYLLRA 409
Query: 473 IERESGVKFEHISAP 487
IE+ + E + P
Sbjct: 410 IEKATRQSVEQMHLP 424
>gi|384564633|ref|ZP_10011737.1| DNA/RNA helicase, superfamily II [Saccharomonospora glauca K62]
gi|384520487|gb|EIE97682.1| DNA/RNA helicase, superfamily II [Saccharomonospora glauca K62]
Length = 521
Score = 251 bits (641), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 150/356 (42%), Positives = 205/356 (57%), Gaps = 21/356 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQA+T + L G D++G+ARTG GKT F +P+L+ LT G
Sbjct: 9 LAESGIERTFDIQALTLPLALRGEDVIGQARTGTGKTFGFGVPLLQRLT--------LPG 60
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
G P LV++PTREL QV +D + G +G+ +YGG PY +Q L+KG+DVVIG
Sbjct: 61 DG-TPQALVVVPTRELCLQVSQDLENAGKHLGVRIASIYGGRPYESQIKTLRKGVDVVIG 119
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D E+ ++ L + VLDEADEML +GF+ D+E IL V D QT+LFSAT
Sbjct: 120 TPGRLLDLAEQRHLVLGKIATLVLDEADEMLDLGFLPDIERILRMVPDER--QTMLFSAT 177
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P + ++ FL I +E V S + +++ +++
Sbjct: 178 MPGPILTLARTFLHQPTH-IRAEDHEAGAVHERTTQFVYRSHSLDKPELVAKVLQAEGR- 235
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
G T+IFT TK +A ++AD L A A+HGD+ Q RE L FRSGK LVAT+VA
Sbjct: 236 GLTMIFTRTKRTAQKVADDLTERGFAAAAVHGDLGQGAREQALRAFRSGKVDVLVATDVA 295
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PRKSSVS 471
ARG+D++DV +I + P D + Y+HR GRTGRAG GVA+ L D PR +S
Sbjct: 296 ARGIDVDDVTHVINYQTPEDEKTYVHRIGRTGRAGKAGVAITLVDWDEVPRWKLIS 351
>gi|397653450|ref|YP_006494133.1| hypothetical protein CULC0102_0697 [Corynebacterium ulcerans 0102]
gi|393402406|dbj|BAM26898.1| hypothetical protein CULC0102_0697 [Corynebacterium ulcerans 0102]
Length = 441
Score = 251 bits (641), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 144/368 (39%), Positives = 217/368 (58%), Gaps = 18/368 (4%)
Query: 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
S H + ++ + + L +GI F IQ +T + LDG D++G+ARTG GKTL F
Sbjct: 4 STHKPTFAELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGQARTGMGKTLGFG 63
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
+P+L+ + + A+ P LV++PTRELA+QV ED ++ + +YGG
Sbjct: 64 VPLLDRVFD----AADVAELDGTPRALVVVPTRELAQQVGEDLELAARHTPVRVTTVYGG 119
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
PY Q L KG+DVV+GTPGR+ D ++G++ L + VLDEADEML +GF D+E
Sbjct: 120 RPYEEQIHVLDKGVDVVVGTPGRLIDLHQQGHLILDHVAILVLDEADEMLDLGFFPDIEK 179
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVL 342
+LG + ++ QTLLFSAT+P V ++ F+ + I + E + T+ + +V
Sbjct: 180 LLGAL--THQHQTLLFSATMPGPVLTLARTFM---LRPIHIRAEEVNASHTHASIEQVVF 234
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQR 398
++ + ++ + G+TIIFT TK +A++LA+ L G +HGD+ Q+ R
Sbjct: 235 QAHRMDKTAITARALQAHER-GKTIIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAAR 293
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E++L+ FR + LVAT+VAARGLDI+DV +I + P D Y+HR GRTGRAG+TG
Sbjct: 294 ELSLSMFRDSRVDILVATDVAARGLDIDDVTHVINYQTPDDPMTYVHRIGRTGRAGHTGT 353
Query: 459 AVML--YD 464
A+ L YD
Sbjct: 354 AITLVGYD 361
>gi|300856701|ref|YP_003781685.1| RNA helicase [Clostridium ljungdahlii DSM 13528]
gi|300436816|gb|ADK16583.1| predicted RNA helicase [Clostridium ljungdahlii DSM 13528]
Length = 525
Score = 251 bits (641), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 165/445 (37%), Positives = 243/445 (54%), Gaps = 25/445 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E IQA + ++LDG+D++G+A+TG GKTLAF P+L SK T +
Sbjct: 23 GFEEPSQIQAESIPVILDGNDVIGQAQTGTGKTLAFGAPML----------SKITTKSKH 72
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGR 247
S L++ PTRELA QV+++ + +YGG P Q LK+G+DVV+GTPGR
Sbjct: 73 ISALIVTPTRELAIQVNDELSRIAKFKKVALLPIYGGQPIDRQIRSLKRGMDVVVGTPGR 132
Query: 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSW 307
I DHI+R +DLS+++F +LDEADEML MGF+ED+E I+ K ++++ QTLLFSAT+P
Sbjct: 133 ILDHIKRKTLDLSNIEFLILDEADEMLDMGFIEDIENII-KATNSDR-QTLLFSATMPDQ 190
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTI 367
+K +S++++KS+ K+I + N T + R + + I+ I
Sbjct: 191 IKKLSSRYMKSNIKSIKIAKNTLTVDKT--KQYYYEIKQKDRFESLCRILDV-DEPSSAI 247
Query: 368 IFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423
IF +TK +L + L +HGD+ Q+QR TL F+ G LVAT+VAARG+
Sbjct: 248 IFCKTKRGVDELVEGLQARGYNVEGMHGDMGQNQRLNTLRKFKEGSLEFLVATDVAARGI 307
Query: 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKFE 482
D+ +V +I + P+D E+Y+HR GRTGRA G+A L PR+ + K IE+ + K
Sbjct: 308 DVENVSHVINYDLPQDTESYVHRIGRTGRANKEGIAYSLVTPREYILLKQIEKFTKSKIR 367
Query: 483 HISAPQPADIAKAAGVEAAETI-TQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKA 541
P DI +A E + + +S+ F A EL L +A AL K
Sbjct: 368 RKEIPTVDDIYEAKYKNIEEQVKSIISEDNYKNFIPIATELDEEYNLVD---VAAALMKI 424
Query: 542 VVSAFL-FSSSSNSLSLTSGTMCFF 565
+ L F NSL++ + F
Sbjct: 425 IFDKELSFDYKENSLTVDEKDVRLF 449
>gi|239918016|ref|YP_002957574.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
gi|239839223|gb|ACS31020.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
Length = 611
Score = 251 bits (641), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 147/371 (39%), Positives = 212/371 (57%), Gaps = 16/371 (4%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F + + E L++KGI FPIQAMT + L G D++G+A+TG GKTL F +P L+
Sbjct: 42 FGVHPAIVEALEAKGIVHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPALQRAI- 100
Query: 174 GPTKAS----KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
GP + + G AP L++ PTRELA QV D L +YGG Y
Sbjct: 101 GPGEPGWDGLEAKGTAGAPQALIVAPTRELAVQVAGDLTAAAARRPLRIATIYGGRAYEP 160
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q +L++G+++V+GTPGR+ D + + ++ L + VLDEADEML +GF+ DVE +L V
Sbjct: 161 QIEELQRGVEIVVGTPGRLIDLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVETLLAAV 220
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
QT+LFSAT+P V ++ +++ ++ ++R +V +
Sbjct: 221 PAVR--QTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAHHMDK 278
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGF 405
+++ ++ G RTIIFT TK +A+++AD L A ALHGD+ Q RE L F
Sbjct: 279 DELVARALQAEGRG-RTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALRAF 337
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD- 464
R+GK LVAT+VAARG+D++DV + + P D + Y+HR GRTGRAGN GVAV L D
Sbjct: 338 RNGKVDILVATDVAARGIDVDDVTHVFNFQAPEDEKTYVHRVGRTGRAGNKGVAVTLVDW 397
Query: 465 ---PRKSSVSK 472
PR S + K
Sbjct: 398 EDMPRWSLIDK 408
>gi|444432231|ref|ZP_21227390.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia soli NBRC
108243]
gi|443887060|dbj|GAC69111.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia soli NBRC
108243]
Length = 588
Score = 251 bits (641), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 151/394 (38%), Positives = 223/394 (56%), Gaps = 24/394 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+R+ + G E+ PIQA T +LDG D+VG A+TG GKT AF +PIL L G K
Sbjct: 22 VRQAITDVGYETPSPIQAATIPPLLDGRDVVGLAQTGTGKTAAFAVPILSRLDAGAKK-- 79
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGI 238
P L+L PTRELA QV E F Y + + +YGG Y Q L++G
Sbjct: 80 --------PQALILAPTRELALQVSEAFGRYSSHMSDVRVLPIYGGQSYSVQLSGLRRGA 131
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
V++GTPGR+ DH++RG +D+S L F VLDEADEML MGF EDVE IL + D+ +V
Sbjct: 132 QVIVGTPGRVIDHLDRGTLDISELGFLVLDEADEMLTMGFAEDVERILAETPDSKQVA-- 189
Query: 299 LFSATLPSWVKHISTKFLKS-DKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P + ++ K+LK+ D+ T+ K + N+ + S + + +
Sbjct: 190 LFSATMPPAIGRLAKKYLKNPDEITV----KSKTATAQNITQRYIQVSHQRKLDALTRFL 245
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
+ I+F TK++ +LA+ L A A++GD+ Q+QRE T+ ++G L
Sbjct: 246 EVETFDA-MIVFVRTKQATEELAEKLRARGFSAVAINGDLAQAQRERTINQLKNGAIDIL 304
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK- 472
VAT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + +
Sbjct: 305 VATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALLFVSPRERHLLRA 364
Query: 473 IERESGVKFEHISAPQPADIAKAAGVEAAETITQ 506
IER + I P D+ + A++IT+
Sbjct: 365 IERATRQSLTEIGLPSAEDVNAQRVSKFADSITE 398
>gi|337290208|ref|YP_004629229.1| hypothetical protein CULC22_00594 [Corynebacterium ulcerans
BR-AD22]
gi|334698514|gb|AEG83310.1| hypothetical protein CULC22_00594 [Corynebacterium ulcerans
BR-AD22]
Length = 441
Score = 251 bits (641), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 144/368 (39%), Positives = 217/368 (58%), Gaps = 18/368 (4%)
Query: 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
S H + ++ + + L +GI F IQ +T + LDG D++G+ARTG GKTL F
Sbjct: 4 STHKPTFAELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGQARTGMGKTLGFG 63
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
+P+L+ + + A+ P LV++PTRELA+QV ED ++ + +YGG
Sbjct: 64 VPLLDRVFD----AADVAELDGTPRALVVVPTRELAQQVGEDLELAARHTPVRVTTVYGG 119
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
PY Q L KG+DVV+GTPGR+ D ++G++ L + VLDEADEML +GF D+E
Sbjct: 120 RPYEEQIHVLDKGVDVVVGTPGRLIDLHQQGHLILDHVAILVLDEADEMLDLGFFPDIEK 179
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVL 342
+LG + ++ QTLLFSAT+P V ++ F+ + I + E + T+ + +V
Sbjct: 180 LLGAL--THQHQTLLFSATMPGPVLTLARTFM---LRPIHIRAEEVNASHTHASIEQVVF 234
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQR 398
++ + ++ + G+TIIFT TK +A++LA+ L G +HGD+ Q+ R
Sbjct: 235 QAHRMDKTAITARALQAHER-GKTIIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAAR 293
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E++L+ FR + LVAT+VAARGLDI+DV +I + P D Y+HR GRTGRAG+TG
Sbjct: 294 ELSLSMFRDSRVDILVATDVAARGLDIDDVTHVINYQTPDDPMTYVHRIGRTGRAGHTGT 353
Query: 459 AVML--YD 464
A+ L YD
Sbjct: 354 AITLVGYD 361
>gi|257068313|ref|YP_003154568.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
gi|256559131|gb|ACU84978.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
Length = 582
Score = 251 bits (641), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 143/357 (40%), Positives = 208/357 (58%), Gaps = 12/357 (3%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE-SLT 172
F + + E L +KGI + FPIQ++T + L G D++G+A+TG GKTL F +P+L+ S+
Sbjct: 36 FDVRTDIVEALAAKGITTPFPIQSLTLPVALRGRDIIGQAKTGTGKTLGFGIPLLQNSVA 95
Query: 173 NG-PTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
G P A + G P LV+LPTRELA QV D + + +YGG Y Q
Sbjct: 96 PGEPNPADRPIG---TPQALVVLPTRELAVQVAHDLETASAKRPIRILTVYGGRAYEPQI 152
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
L+KG++VV+GTPGR+ D + + +DLS ++ VLDEADEML +GF+ED+E +L V
Sbjct: 153 EALEKGVEVVVGTPGRLIDLMRQKYLDLSQVRTAVLDEADEMLDLGFLEDIEKLLQAV-- 210
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
K QT+LFSAT+P + ++ +F+K ++ + +++ +V + +
Sbjct: 211 PVKRQTMLFSATMPGPIMALARRFMKQPTHIRAHDPGDESRTKADIKQVVYRAHQLDKIE 270
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQ----LADLLPGARALHGDIQQSQREVTLAGFRS 407
V+ I++ G +IIF TK A + LAD A LHGD+ Q RE L FRS
Sbjct: 271 VMARILQARGR-GLSIIFMRTKRQADRVAGDLADRGFAAAPLHGDLGQGAREQALRAFRS 329
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
GK LVAT+VAARG+D+ DV ++ P D + Y+HR+GRTGRAG G A+ D
Sbjct: 330 GKIDVLVATDVAARGIDVTDVTHVVNWNCPDDDKTYLHRTGRTGRAGKKGTAITFVD 386
>gi|443672055|ref|ZP_21137151.1| putative DEAD/DEAH box helicase [Rhodococcus sp. AW25M09]
gi|443415418|emb|CCQ15489.1| putative DEAD/DEAH box helicase [Rhodococcus sp. AW25M09]
Length = 600
Score = 251 bits (641), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 153/394 (38%), Positives = 223/394 (56%), Gaps = 29/394 (7%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L+ G ES PIQA T ++ G+D+VG A+TG GKT AF +PIL L S+
Sbjct: 51 LRDVGYESPSPIQAATIPPLMAGNDVVGLAQTGTGKTAAFAVPILSRL-----DVSR--- 102
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
R P LVL PTRELA QV E F Y + GL +YGG Y Q L+KG +++
Sbjct: 103 --RVPQALVLAPTRELALQVAEAFGKYATHIPGLHILPIYGGQAYGIQLSGLRKGAQIIV 160
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+E+G +DLS L++ VLDEADEML+MGF EDVE IL + +V LFSA
Sbjct: 161 GTPGRVIDHLEKGTLDLSGLEYLVLDEADEMLKMGFQEDVERILSDTPEYKQVA--LFSA 218
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ IS ++L +++ K + N+ + + + + + I
Sbjct: 219 TMPAAIRKISKQYLHD---PVEITVKTKTSTAPNITQRYVQVAHQRKLEALTRIFEVEEF 275
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
I+F TK++ +LA+ L A A++GDI Q+QRE T+ ++G+ LVAT+V
Sbjct: 276 EA-MIMFVRTKQATEELAEKLRARGFSAAAINGDIVQAQRERTIGQLKNGQIDILVATDV 334
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERES 477
AARGLD++ + +I + P D E+Y+HR GRTGRAG G A++ PR+ + K IER +
Sbjct: 335 AARGLDVDRISHVINYDIPHDTESYVHRIGRTGRAGRAGQALLFVAPRERHLLKAIERAT 394
Query: 478 GVKFEHISAPQPADIAKAAGVEAAETITQVSDSV 511
+ P D+ A+ +T+ DS+
Sbjct: 395 RQPITEMQLPSVDDV-------NAQRVTKFKDSI 421
>gi|359778006|ref|ZP_09281280.1| ATP-dependent RNA helicase DeaD [Arthrobacter globiformis NBRC
12137]
gi|359304860|dbj|GAB15109.1| ATP-dependent RNA helicase DeaD [Arthrobacter globiformis NBRC
12137]
Length = 697
Score = 251 bits (641), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 155/398 (38%), Positives = 220/398 (55%), Gaps = 26/398 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT-----NGPTKA 178
L+ G E PIQA T ++L+G D+VG A+TG GKT AF +P L L NGP++
Sbjct: 68 LQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRLAELHDLNGPSRK 127
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKG 237
++ LVL PTRELA QV E F Y + T +YGG+ Y Q L++G
Sbjct: 128 TQ---------ALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQLAGLRRG 178
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
VV+GTPGR+ DHI +G++DLS L++ VLDEADEMLRMGF EDVE I + ++ +V
Sbjct: 179 AQVVVGTPGRVIDHIAKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQQTPESRQVA- 237
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+PS ++ +S ++L + ++ K TN++ L + + I+
Sbjct: 238 -LFSATMPSQIRRMSKQYLNN---PAEISVKSKTSTGTNIKQRYLQVMGPHKLDAMTRIL 293
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
G I F TK + LAD L A A++GDI Q QRE T+ + G+ L
Sbjct: 294 EVEEFDG-VIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRIDIL 352
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSK 472
VAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG G A++ PR K +
Sbjct: 353 VATDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRAGDAILFMTPREKYLLRA 412
Query: 473 IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDS 510
IE+ + E + P + + AE IT+ +S
Sbjct: 413 IEKATRQTVEQMHLPTAETVNSLRLGKFAERITETLES 450
>gi|376284214|ref|YP_005157424.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
31A]
gi|371577729|gb|AEX41397.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
31A]
Length = 436
Score = 251 bits (640), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 146/352 (41%), Positives = 208/352 (59%), Gaps = 16/352 (4%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+ + L + G++ F IQ +T + LDG DL+G+ARTG GKT F +P+++ + + A+
Sbjct: 19 ITDALATVGVKRTFAIQELTLPIALDGRDLIGQARTGMGKTYGFGVPLIDRVFD----AA 74
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
P LV++PTRELA QV +D + + +T +YGG PY Q +L+ G+D
Sbjct: 75 DVAELDGTPRALVVVPTRELAHQVGDDLKLLSRNIPITVATIYGGRPYEEQIAQLESGVD 134
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+GTPGR+ D + GN+ L + VLDEADEML +GF D+E +L + + QT+L
Sbjct: 135 VVVGTPGRLIDLYQLGNLALDHVAVLVLDEADEMLDLGFFPDIEKLLAALTHPH--QTML 192
Query: 300 FSATLPSWVKHISTKFLKSDKKT-IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
FSAT+P V ++ F+ + G + AST I+ +S V +++
Sbjct: 193 FSATMPGAVVTLARTFMHQPVHIRAEDTGAAQTHASTT--QIIFQAHRMDKSAVTARVLQ 250
Query: 359 CYSSGGRTIIFTETKESASQLADLLP--GAR--ALHGDIQQSQREVTLAGFRSGKFMTLV 414
G+TIIF TK +A++LAD L G R +HGD+ QS RE +L FR+GK LV
Sbjct: 251 AEGR-GKTIIFARTKRTAAELADDLAQRGFRVAGVHGDLGQSAREASLDAFRTGKAHILV 309
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML--YD 464
AT+VAARGLDI+DV +I + P D Y+HR GRTGRAG+TG AV L YD
Sbjct: 310 ATDVAARGLDIDDVTHVINYQTPDDPMTYVHRIGRTGRAGHTGTAVTLVGYD 361
>gi|319790474|ref|YP_004152107.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
HB-1]
gi|317114976|gb|ADU97466.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
HB-1]
Length = 417
Score = 251 bits (640), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 159/427 (37%), Positives = 243/427 (56%), Gaps = 31/427 (7%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+++ L+ G PIQ + L+G DLVG+A+TG GKT AF +P++ ++ P +
Sbjct: 12 IQKSLEEMGFVEPTPIQKEAIPLALEGHDLVGQAQTGTGKTAAFGIPLVSGIS--PRE-- 67
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKG-I 238
R +VL PTRELA QV + + G G+++ +YGG Q LK+G
Sbjct: 68 ------RGVKAIVLTPTRELAIQVAHELSLIGKNKGVSAFPIYGGVSIERQINALKRGRH 121
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
+++GTPGR+KD I RG + L +++ VLDEAD+ML MGF+ED+E IL K QTL
Sbjct: 122 QIIVGTPGRVKDLINRGVLRLDRVRYAVLDEADQMLDMGFIEDIEEILSKTPKEK--QTL 179
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P ++ + ++LK D K + VG + + + V+ ++ S + + + +++
Sbjct: 180 LFSATMPYEIRRLIGRYLKPDYKNVK-VGKQLI--TPKVKQRIILVRSEDKIKALEKLLK 236
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ G TI+F +TK A+ + L ARA+HGD+ Q QRE + FR GK LV
Sbjct: 237 EHE-GVSTIVFVKTKRDAADIEKELQRRGINARAIHGDLSQRQREFVMRAFREGKVKVLV 295
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV-MLYDPRKSSVSKI 473
AT+VAARG+DI DV L+I E P + E+Y+HR GRTGRAG G+A+ ++ +P K + +I
Sbjct: 296 ATDVAARGIDIKDVGLVINYELPENPESYVHRIGRTGRAGREGLAISLVAEPEKRRLYRI 355
Query: 474 ERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAEL 533
+ GV+ E ++ K E + ++S+ P K A ELL+ S EL
Sbjct: 356 KGLKGVRPERFRVNTVKELKK-------ELLEADANSLPPYVKRLASELLSER--SPEEL 406
Query: 534 LAKALAK 540
+A L+K
Sbjct: 407 VAVLLSK 413
>gi|357589095|ref|ZP_09127761.1| hypothetical protein CnurS_02800 [Corynebacterium nuruki S6-4]
Length = 686
Score = 251 bits (640), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 150/360 (41%), Positives = 210/360 (58%), Gaps = 22/360 (6%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQA T +++G D+VG A+TG GKT AF LP L S+ + R P VLVL
Sbjct: 67 PIQAATIPALMEGHDVVGLAQTGTGKTAAFALPAL----------SRLDLHDRHPQVLVL 116
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCC-LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI 252
PTRELA Q + F+ + G +G + +YGGAPY AQ L++G VV+GTPGRI DH+
Sbjct: 117 APTRELALQSADSFESFAGHLGNVNILPIYGGAPYGAQLSGLRRGAHVVVGTPGRIIDHL 176
Query: 253 ERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 312
E+G++DLS L+F VLDEADEML MGF EDVE IL E + Q LFSAT+PS ++ +S
Sbjct: 177 EKGSLDLSHLRFLVLDEADEMLNMGFQEDVERILS--ETPEERQVALFSATMPSAIRRLS 234
Query: 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTET 372
++L ++ V +E+ + + N+ L + + + I+ + I+F T
Sbjct: 235 KQYLNDAQEYT--VKSEQ-RTADNITQDYLFVTFRNKMNALTRILEV-TDFDAMILFVRT 290
Query: 373 KESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV 428
K +A+ L A A++GDI Q+QRE T+ + G LVAT+VAARGLD++ +
Sbjct: 291 KSDTEDVAEKLRAQGFKAAAINGDIAQNQRERTVDQLKDGTLDILVATDVAARGLDVDRI 350
Query: 429 QLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487
+ + PRD E+Y+HR GRTGRAG G A++ PR K + IER + I P
Sbjct: 351 THVFNYDIPRDTESYVHRIGRTGRAGRHGRAILFVTPREKRMLKNIERATKSHINEIDLP 410
>gi|50954992|ref|YP_062280.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50951474|gb|AAT89175.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 589
Score = 251 bits (640), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 154/375 (41%), Positives = 217/375 (57%), Gaps = 22/375 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
LK G E+ IQA T ++L+G D+VG A+TG GKT AF LPIL L S+K+
Sbjct: 32 LKDVGYETPSAIQAATIPLLLEGRDVVGLAQTGTGKTAAFALPILSRL-----DLSQKS- 85
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P LVL PTRELA QV E F+ Y + G+ +YGG Y Q L++G+ +V+
Sbjct: 86 ----PQALVLAPTRELALQVAEAFESYATHLKGVHLLPVYGGQGYGVQLSALRRGVHIVV 141
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGRI DH+++G +DLS LK VLDEADEML+MGF EDVE IL D +V LFSA
Sbjct: 142 GTPGRIMDHLDKGTLDLSGLKHLVLDEADEMLKMGFAEDVEKILADTPDDKQVA--LFSA 199
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ IS K+L D + + + A+T R++V S S + + I+ +
Sbjct: 200 TMPAQIRRISKKYLH-DPEEVTVKARTTTSANTTQRYLV--VSYSQKVDALTRILEVENF 256
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
I+F TK LA+ L A A+ GD+ Q+QRE T+ +SGK LVAT+V
Sbjct: 257 EA-MIVFVRTKNETETLAERLRARGYSAAAISGDVAQAQRERTVGQLKSGKLDILVATDV 315
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERES 477
AARGLD++ + ++ + P D E+Y+HR GRTGRAG +G A+ R + ++ IE+ +
Sbjct: 316 AARGLDVDRISHVVNFDIPVDTESYVHRIGRTGRAGRSGAAISFVTTRERRLLTAIEKAT 375
Query: 478 GVKFEHISAPQPADI 492
+ P D+
Sbjct: 376 RQPLTPMPLPSVDDV 390
>gi|410697698|gb|AFV76766.1| DNA/RNA helicase, superfamily II [Thermus oshimai JL-2]
Length = 508
Score = 251 bits (640), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 169/389 (43%), Positives = 227/389 (58%), Gaps = 23/389 (5%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
+ F + + E LK+KGI + PIQA + LDG DL+G+ARTG GKTLAF LPI E L
Sbjct: 4 ANFPLKPEILEALKAKGIFAPTPIQAAALPIALDGRDLIGQARTGTGKTLAFALPIAERL 63
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
+ GR P LVL PTRELA QV E +V A L +YGG Y Q+
Sbjct: 64 APSSER-------GRPPRALVLTPTRELALQVAE--EVASVAPHLKVVAVYGGTGYGKQK 114
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
L +G DVV+ TPGR D++E+G +DLS ++ VLDEADEML MGF E+VE +L
Sbjct: 115 EALARGADVVVATPGRALDYLEQGVLDLSRVEIAVLDEADEMLSMGFEEEVERLLSAT-- 172
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
+ QTLLFSATLPSW + +S +++++ I++V E + I+ P R
Sbjct: 173 PKERQTLLFSATLPSWARKLSERYMRA-PVLINVVREEGVTYQEEA--ILAPTD---RLG 226
Query: 352 VIPDIIRCYSSGGRTIIFT----ETKESASQLADLLPGARALHGDIQQSQREVTLAGFRS 407
++ D++ + R I+FT ET+E A+ L ARA+HGD+ QS RE L FR
Sbjct: 227 LLSDLL-FVKAPKRAIVFTSTKRETEEVAAGLLQAGHPARAIHGDLSQSDRERVLKAFRE 285
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR- 466
G+ LVAT+VAARGLDI +V L++ P+ EAY HRSGRTGRAG G V Y PR
Sbjct: 286 GEVRVLVATDVAARGLDIPEVDLVVHYRLPQSPEAYQHRSGRTGRAGRGGEVVAFYGPRE 345
Query: 467 KSSVSKIERESGVKFEHISAPQPADIAKA 495
K + +E+ G F ++ P P ++ +A
Sbjct: 346 KRELMALEKAVGRTFRRVNPPTPEEVLEA 374
>gi|289705155|ref|ZP_06501559.1| ATP-dependent RNA helicase DeaD family protein [Micrococcus luteus
SK58]
gi|289558183|gb|EFD51470.1| ATP-dependent RNA helicase DeaD family protein [Micrococcus luteus
SK58]
Length = 470
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 149/371 (40%), Positives = 213/371 (57%), Gaps = 16/371 (4%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F + + E L++KGI FPIQAMT + L G D++G+A+TG GKTL F +P L+
Sbjct: 42 FGVHPKIVEALEAKGIVHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPALQRAI- 100
Query: 174 GPTK----ASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
GP + A + G AP L++ PTRELA QV D L +YGG Y
Sbjct: 101 GPGEPGWDALEAKGTAGAPQALIVAPTRELAVQVAGDLTAAAARRPLRIATIYGGRAYEP 160
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q +L++GI++V+GTPGR+ D + + ++ L + VLDEADEML +GF+ DVE +L V
Sbjct: 161 QIEELQRGIEIVVGTPGRLIDLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVETLLAAV 220
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
QT+LFSAT+P V ++ +++ ++ ++R +V +
Sbjct: 221 PAVR--QTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAHHMDK 278
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGF 405
+++ ++ G RTIIFT TK +A+++AD L A ALHGD+ Q RE L F
Sbjct: 279 DELVARALQAEGRG-RTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALRAF 337
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD- 464
R+GK LVAT+VAARG+D++DV + + P D + Y+HR GRTGRAGN GVAV L D
Sbjct: 338 RNGKVDILVATDVAARGIDVDDVTHVFNFQAPEDEKTYVHRVGRTGRAGNKGVAVTLVDW 397
Query: 465 ---PRKSSVSK 472
PR S + K
Sbjct: 398 EDMPRWSLIDK 408
>gi|254432488|ref|ZP_05046191.1| cold-shock deAd box protein a [Cyanobium sp. PCC 7001]
gi|197626941|gb|EDY39500.1| cold-shock deAd box protein a [Cyanobium sp. PCC 7001]
Length = 610
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 148/377 (39%), Positives = 216/377 (57%), Gaps = 22/377 (5%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L + G PIQ ++ G DLVG+A+TG GKT AF LP+L L
Sbjct: 62 EALAAIGYSEPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLLAGLD--------- 112
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDV 240
R P VLVL PTRELA QV E F+ Y + + + +YGGA + Q L++G V
Sbjct: 113 -AEQRKPQVLVLAPTRELALQVAESFNSYAAQLPQVRTVAVYGGADFRDQIHHLRRGAQV 171
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGR+ DH+ +G +DLS L+ VLDEADEMLRMGF++DVE +LG++ + +V +LF
Sbjct: 172 VVGTPGRVMDHMRQGTLDLSELRSLVLDEADEMLRMGFIDDVEWVLGQLPEQRQV--VLF 229
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P+ ++ IS ++L ++ K ++ +R L + + + ++
Sbjct: 230 SATMPAEIRRISQQYLNGPA---EITIRTKAADASRIRQRFLTVPAPLKLAALERVLESE 286
Query: 361 SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
+S G IIF TK +A+ L L+GD+ Q+QRE T+ ++G+ LVAT
Sbjct: 287 TSEG-VIIFARTKAITLTVAESLEAHGYDVAVLNGDVPQAQRERTIERLKNGQVDVLVAT 345
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIER 475
+VAARGLD+ + L+I + P D EAY+HR GRTGRAG +G A++ PR + + +ER
Sbjct: 346 DVAARGLDVERIGLVINYDIPFDGEAYVHRIGRTGRAGRSGEAILFLTPRERRFLGGLER 405
Query: 476 ESGVKFEHISAPQPADI 492
+G E + P A I
Sbjct: 406 AAGKPIEPMEVPSNATI 422
>gi|392400091|ref|YP_006436691.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
Cp162]
gi|390531169|gb|AFM06898.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
Cp162]
Length = 441
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 145/368 (39%), Positives = 216/368 (58%), Gaps = 18/368 (4%)
Query: 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
S H + ++ + + L +GI F IQ +T + LDG D++G+ARTG GKTL F
Sbjct: 4 STHKPTFAELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGQARTGMGKTLGFG 63
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
+P+L+ + + A+ P LV++PTRELA+QV ED + + +YGG
Sbjct: 64 VPLLDRVFD----AADVAELDGTPRALVVVPTRELAQQVGEDLERAARRTPVRVTTVYGG 119
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
PY Q L G+DVV+GTPGR+ D ++GN+ L + VLDEADEML +GF D+E
Sbjct: 120 RPYEEQIQVLTAGVDVVVGTPGRLIDLHQQGNLTLDHVAILVLDEADEMLDLGFFPDIEK 179
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVL 342
+LG ++ ++ QTLLFSAT+P V ++ F+ + I + E + T+ + +V
Sbjct: 180 LLGALK--HQHQTLLFSATMPGPVLTLARTFM---SRPIHIRAEEVNASHTHASIEQVVF 234
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQR 398
++ + ++ G+TIIFT TK +A++LA+ L G +HGD+ Q+ R
Sbjct: 235 QAHRMDKTAITARALQAKER-GKTIIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAAR 293
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E++L FR+G+ LVAT+VAARGLDI+DV +I + P D Y+HR GRTGRAG+TG
Sbjct: 294 ELSLGMFRNGRVDILVATDVAARGLDIDDVTHVINYQTPDDPMTYVHRIGRTGRAGHTGT 353
Query: 459 AVML--YD 464
A+ L YD
Sbjct: 354 AITLVGYD 361
>gi|340374345|ref|XP_003385698.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Amphimedon queenslandica]
Length = 588
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 167/433 (38%), Positives = 233/433 (53%), Gaps = 38/433 (8%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G + F IQA T L+G +L+GRA TG GKTLA+ LPI+ L++ T+
Sbjct: 72 LSRNGYTTPFEIQAKTLPHTLEGKNLIGRAITGSGKTLAYALPIINKLSSSKTRG----- 126
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
P LVL PTREL +QV E + + L LYGGA Y +QE +L+ G DVV
Sbjct: 127 ---VPRALVLTPTRELCRQVTEC--ISSLSSNLRCVSLYGGASYSSQERELRYGADVVCA 181
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D I RGN+ L + + +LDEADE+L F ++ +L + + Q LLFSAT
Sbjct: 182 TPGRLNDQINRGNLPLDNFQIVILDEADELLTPNFKIQIDDVLA--DTPSDKQMLLFSAT 239
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA-RSQVIPDIIRCYSS 362
+P VK + +++K IDL + + ++H VL + I D+I YS
Sbjct: 240 MPPNVKEVIRQYMKQ-SVVIDLTASSN-RLPPAIKHKVLRLDRGMDKFGTILDLINVYSP 297
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
R I+FT TK AS L L A +LHGD+ Q RE L FRSGK + AT+V
Sbjct: 298 -QRAIVFTTTKIQASDLGSFLSRNGVSATSLHGDLSQQMRETCLERFRSGKIKIIAATDV 356
Query: 419 AARGLDINDVQLIIQCE-PPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSKI-ERE 476
AARG+DI ++ ++Q E PP +++Y+HRSGRTGR G G +++L + S + E +
Sbjct: 357 AARGIDIPEIDFVLQIEPPPSGIDSYVHRSGRTGRKGLPGTSILLLSSSQDSQYFLRELK 416
Query: 477 SGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELL-- 534
V+ E I P E IT+ DS + + K+ +E L N+ L AE L
Sbjct: 417 RVVQVEEIKRPS-----------RDEVITRSLDSAVKSIKAKKDEKLINAALPLAEELIS 465
Query: 535 ---AKALAKAVVS 544
AKALA A++S
Sbjct: 466 EDGAKALASAIIS 478
>gi|339627938|ref|YP_004719581.1| ATP-dependent RNA helicase [Sulfobacillus acidophilus TPY]
gi|379007571|ref|YP_005257022.1| ATP-dependent RNA helicase DbpA [Sulfobacillus acidophilus DSM
10332]
gi|339285727|gb|AEJ39838.1| ATP-dependent RNA helicase [Sulfobacillus acidophilus TPY]
gi|361053833|gb|AEW05350.1| ATP-dependent RNA helicase DbpA [Sulfobacillus acidophilus DSM
10332]
Length = 525
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 158/405 (39%), Positives = 229/405 (56%), Gaps = 22/405 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L+ G E PIQA T ++L+G DL+G+A+TG GKT AF +PI+E L + SK+
Sbjct: 21 LEEMGFEEPSPIQAKTIPIILEGHDLIGQAQTGTGKTAAFGIPIVERLDH----RSKRV- 75
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
LVL PTRELA QV E+ G G+ +YGG Y Q L+ G VVIG
Sbjct: 76 -----EALVLAPTRELAIQVAEEITKIGKFSGIKVVPIYGGQSYDRQIRALEHGAQVVIG 130
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ DHI RG + L ++ VLDEADEML MGF+ED+E IL V + QTLLFSAT
Sbjct: 131 TPGRVMDHIRRGTLKLDHVQMMVLDEADEMLDMGFIEDIEFILKNVPENR--QTLLFSAT 188
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P + ++ ++LK D ++ + E++ + + + + + I+
Sbjct: 189 VPDPIAKLARRYLK-DPVHVN-ISPERLTVPS-IEQVFYEVREFEKLDALTRILDM-EEA 244
Query: 364 GRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
RTIIF TK+ +L + L A ALHGD+ Q QR + F+ G LVAT+VA
Sbjct: 245 ERTIIFCRTKKRVDELTEGLQARGYTAEALHGDLNQVQRNRVMKRFKEGGSEILVATDVA 304
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK-SSVSKIERESG 478
ARGLDI++V +I + P+D E+Y+HR GRTGRAG TG A+ L +P++ + ++ER
Sbjct: 305 ARGLDIDNVTHVINYDLPQDTESYVHRIGRTGRAGRTGTAISLINPKEFRQLRQMERVLR 364
Query: 479 VKFEHISAPQPADIA-KAAGVEAAETITQVSDSVIPAFKSAAEEL 522
V+ + P PAD+A K + ++ V+P+++ +L
Sbjct: 365 VRLQRRPLPTPADVAEKQREMLKNRLAEEIQRGVLPSYQELVMQL 409
>gi|281415806|ref|ZP_06247548.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
Length = 597
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 147/371 (39%), Positives = 212/371 (57%), Gaps = 16/371 (4%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F + + E L++KGI FPIQAMT + L G D++G+A+TG GKTL F +P L+
Sbjct: 42 FGVHPAIVEALEAKGIVHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPALQRAI- 100
Query: 174 GPTKAS----KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
GP + + G AP L++ PTRELA QV D L +YGG Y
Sbjct: 101 GPGEPGWDGLEAKGTAGAPQALIVAPTRELAVQVAGDLTAAAARRPLRIATIYGGRAYEP 160
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q +L++G+++V+GTPGR+ D + + ++ L + VLDEADEML +GF+ DVE +L V
Sbjct: 161 QIEELQRGVEIVVGTPGRLIDLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVETLLAAV 220
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
QT+LFSAT+P V ++ +++ ++ ++R +V +
Sbjct: 221 PAVR--QTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAHHMDK 278
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGF 405
+++ ++ G RTIIFT TK +A+++AD L A ALHGD+ Q RE L F
Sbjct: 279 DELVARALQAEGRG-RTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALRAF 337
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD- 464
R+GK LVAT+VAARG+D++DV + + P D + Y+HR GRTGRAGN GVAV L D
Sbjct: 338 RNGKVDILVATDVAARGIDVDDVTHVFNFQAPEDEKTYVHRVGRTGRAGNKGVAVTLVDW 397
Query: 465 ---PRKSSVSK 472
PR S + K
Sbjct: 398 EDMPRWSLIDK 408
>gi|379714822|ref|YP_005303159.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
316]
gi|386739884|ref|YP_006213064.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
31]
gi|387138142|ref|YP_005694121.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
CIP 52.97]
gi|387140160|ref|YP_005696138.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
1/06-A]
gi|389849889|ref|YP_006352124.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
258]
gi|349734620|gb|AEQ06098.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
CIP 52.97]
gi|355391951|gb|AER68616.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
1/06-A]
gi|377653528|gb|AFB71877.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
316]
gi|384476578|gb|AFH90374.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
31]
gi|388247195|gb|AFK16186.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
258]
Length = 441
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 145/368 (39%), Positives = 216/368 (58%), Gaps = 18/368 (4%)
Query: 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
S H + ++ + + L +GI F IQ +T + LDG D++G+ARTG GKTL F
Sbjct: 4 STHKPTFAELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGQARTGMGKTLGFG 63
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
+P+L+ + + A+ P LV++PTRELA+QV ED + + +YGG
Sbjct: 64 VPLLDRVFD----AADVAELDGTPRALVVVPTRELAQQVGEDLERAARRTPVRVTTVYGG 119
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
PY Q L G+DVV+GTPGR+ D ++GN+ L + VLDEADEML +GF D+E
Sbjct: 120 RPYEEQIQVLAAGVDVVVGTPGRLIDLHQQGNLTLDHVAILVLDEADEMLDLGFFPDIEK 179
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVL 342
+LG ++ ++ QTLLFSAT+P V ++ F+ + I + E + T+ + +V
Sbjct: 180 LLGALK--HQHQTLLFSATMPGPVLTLARTFM---SRPIHIRAEEVNASHTHASIEQVVF 234
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQR 398
++ + ++ G+TIIFT TK +A++LA+ L G +HGD+ Q+ R
Sbjct: 235 QAHRMDKTAITARALQAKER-GKTIIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAAR 293
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E++L FR+G+ LVAT+VAARGLDI+DV +I + P D Y+HR GRTGRAG+TG
Sbjct: 294 ELSLGMFRNGRVDILVATDVAARGLDIDDVTHVINYQTPDDPMTYVHRIGRTGRAGHTGT 353
Query: 459 AVML--YD 464
A+ L YD
Sbjct: 354 AITLVGYD 361
>gi|404422771|ref|ZP_11004447.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium fortuitum subsp. fortuitum DSM 46621]
gi|403655804|gb|EJZ10637.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium fortuitum subsp. fortuitum DSM 46621]
Length = 576
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 153/402 (38%), Positives = 224/402 (55%), Gaps = 29/402 (7%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES IQA T +L GSD+VG A+TG GKT AF +PIL + +S+KT
Sbjct: 32 GYESPSAIQAATIPAMLAGSDVVGLAQTGTGKTAAFAIPILSKIDT----SSRKT----- 82
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
LVL PTRELA QV E F YG + + +YGGA Y Q L++G VV+GTPG
Sbjct: 83 -QALVLAPTRELALQVAEAFGRYGAHLPEINVLPIYGGASYTVQLSGLRRGAQVVVGTPG 141
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+ERG +DLS+L + VLDEADEML MGF E+VE IL + +V LFSAT+P
Sbjct: 142 RVIDHLERGTLDLSNLDYLVLDEADEMLTMGFAEEVERILADTPEYKQVA--LFSATMPP 199
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ I+TK+L +++ K + N+ + + + + + ++ G
Sbjct: 200 AIRKITTKYLHD---PVEVTVKAKTATAENITQRFIQVAGARKLDALTRVLEV-EEGDAM 255
Query: 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK++ ++A+ L A A++GDI Q+QRE T+ + G L+AT+VAARG
Sbjct: 256 IVFVRTKQATEEVAERLRSRGFAAAAINGDINQAQRERTITALKDGTIDILIATDVAARG 315
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKF 481
LD+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + K IE+ + K
Sbjct: 316 LDVERISHVVNYDIPHDTESYVHRIGRTGRAGRSGHALLFVTPRERHLLKSIEKHTRSKV 375
Query: 482 EHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELL 523
P D+ A+ + + DS+ + S EL
Sbjct: 376 IEAELPSVDDV-------NAQRVAKFRDSITDSLNSDGLELF 410
>gi|389774439|ref|ZP_10192558.1| DNA/RNA helicase [Rhodanobacter spathiphylli B39]
gi|388438038|gb|EIL94793.1| DNA/RNA helicase [Rhodanobacter spathiphylli B39]
Length = 638
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 148/370 (40%), Positives = 206/370 (55%), Gaps = 22/370 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G ES PIQA T +++G D++G+A+TG GKT AF LPIL + P K
Sbjct: 28 LADVGYESPSPIQAATIPPLMEGRDVLGQAQTGTGKTAAFALPILSRIDLKPGK------ 81
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P LVL PTRELA QV E F Y + GL +YGG Y Q LK+G+ VV+
Sbjct: 82 ----PQALVLAPTRELAIQVAEAFQKYATHMRGLQVLPIYGGQSYGPQLHSLKRGVHVVV 137
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+++G +DLS LK+ VLDEADEMLRMGF++DVE +L + Q LFSA
Sbjct: 138 GTPGRVIDHLDKGTLDLSELKYLVLDEADEMLRMGFIDDVEKVLQAT--PPQRQVALFSA 195
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ I+ + LK +++ + N+ S + + I+
Sbjct: 196 TMPTVIRKIAQRHLKD---PVEVTIKSSTTTAANIHQRYWFVSGMHKLDALTRILEAEPF 252
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
IIF TK++ +LA L A A++GDI Q QRE + + GK LVAT+V
Sbjct: 253 DA-MIIFARTKQATEELAGKLQARGLAAAAINGDIAQPQRERVIQQLKDGKLDILVATDV 311
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERES 477
AARGLD+ + + + P D E+Y+HR GRTGRAG +G A++ PR + + IER +
Sbjct: 312 AARGLDVERISHVFNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLGAIERAT 371
Query: 478 GVKFEHISAP 487
E + P
Sbjct: 372 RQPIEQMQLP 381
>gi|119946809|ref|YP_944489.1| ATP-dependent RNA helicase [Psychromonas ingrahamii 37]
gi|119865413|gb|ABM04890.1| ATP-dependent RNA helicase CsdA [Psychromonas ingrahamii 37]
Length = 581
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 158/421 (37%), Positives = 233/421 (55%), Gaps = 23/421 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA ++L+G D++G A+TG GKT AF LP+L ++ +
Sbjct: 33 GYETPSPIQAQCIPLLLEGKDVLGLAQTGTGKTAAFALPLLANIDINLNQ---------- 82
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VL L PTRELA QV E F Y + G +YGG Y Q +LK+G VV+GTPG
Sbjct: 83 PQVLALAPTRELAIQVAEAFQTYARHLRGFHVLPIYGGQSYDIQFKQLKRGPQVVVGTPG 142
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
RI DH++R +DLS++K +LDEADEMLRMGF++DVE I+ ++ D K QT LFSAT+P
Sbjct: 143 RIMDHLKRKTLDLSNIKTLILDEADEMLRMGFIDDVETIMKEMPD--KRQTALFSATMPD 200
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+K I+ +++ S ++ K N+ + + ++ G
Sbjct: 201 QIKRITKRYMNS---PTEVKIQSKTSTVENIEQKCWIVRGVNKLDALTRMLETEEYDG-V 256
Query: 367 IIFTETKESASQLADLLP--GAR--ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK + +LA+ L G R AL+GD+ Q RE T+A +SG LVAT+VAARG
Sbjct: 257 IIFARTKTATVELAERLEARGYRSAALNGDMNQQVRERTIARLKSGGLDILVATDVAARG 316
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKF 481
LD+ + L++ + P D E+Y+HR GRTGRAG G A++ PR+ + K IER + +
Sbjct: 317 LDVERLSLVVNYDIPTDTESYVHRIGRTGRAGRKGKAILFAAPRERRLLKAIERATRQEI 376
Query: 482 EHISAPQPADIAKAAGVEAAETITQVSDSV-IPAFKSAAEELLNNSGLSAAELLAKALAK 540
+ P ++ K + + V +S + +++ EE+ NN+ + +L A L
Sbjct: 377 TIMDLPSRDEVTKTRIANFQKQLLSVVESEDLTFYRTLFEEIENNTDIDHLDLSAALLYL 436
Query: 541 A 541
A
Sbjct: 437 A 437
>gi|406946236|gb|EKD77505.1| hypothetical protein ACD_42C00315G0003 [uncultured bacterium]
Length = 503
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 167/453 (36%), Positives = 243/453 (53%), Gaps = 33/453 (7%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
SR + + L G E PIQ ++L+G DL+ +A+TG GKT F LPIL L
Sbjct: 25 SRLGLEKEILSALSDLGYEGATPIQEQGIPILLNGQDLLAQAKTGTGKTATFALPILSRL 84
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQ 230
+ RAP L+L+PTRELA QV E F Y V G + +YGG + +Q
Sbjct: 85 NHEL----------RAPQALILVPTRELAIQVAEAFQSYAKHVRGFSVTPIYGGQDFGSQ 134
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
LK+G V++GTPGR+ DH+ R I L++LK VLDEADEML+MGF++DVE ILG++
Sbjct: 135 LRSLKRGSQVIVGTPGRLMDHMRRKTISLNALKMVVLDEADEMLKMGFIDDVEWILGQLT 194
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA-- 348
+ QT LFSATL + ++ I+ ++LK K +K+ TN C +
Sbjct: 195 LPH--QTALFSATLSASIQKIAQRYLKDAHKI-------HIKSHTNTVEATEQCYVTVMN 245
Query: 349 RSQVIPDIIRCYSS--GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTL 402
R Q + + R + IIFT TK + +LA+ L A AL+GD+ Q+ RE T+
Sbjct: 246 RHQKLEVLTRFLETEENQAVIIFTRTKTESMELAEKLQARGYNAAALNGDMSQAAREKTI 305
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
+ G+ L+AT+VAARG+D+ V +I + P DV++Y+HR GRTGRAG G A++
Sbjct: 306 NRLKKGELDILIATDVAARGIDVERVSHVINYDIPHDVDSYVHRIGRTGRAGRAGKAILF 365
Query: 463 YDPRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEE 521
PR+ + K IE + + P A+I + V + ++ V K E
Sbjct: 366 VVPREMRLLKDIEHHIRKSIKRVEPPSVAEIREKRTVLLTKKVSSVIREKGKQLKPYLEI 425
Query: 522 LLNNSGLSAAELLAKALAKAVVSAFLFSSSSNS 554
+LN + +A L AK +A A++ +L NS
Sbjct: 426 VLNLTETNA--LSAKDVAAALI--YLSEEQQNS 454
>gi|334563107|ref|ZP_08516098.1| ATP-dependent RNA helicase [Corynebacterium bovis DSM 20582]
Length = 785
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 155/400 (38%), Positives = 230/400 (57%), Gaps = 23/400 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
+ S G PIQA T ++++G D+VG A+TG GKT AF LP+L + PT+
Sbjct: 151 VTSVGYTEPSPIQAETIPLLMEGHDVVGLAQTGTGKTAAFALPVLAGID--PTQ------ 202
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC-LYGGAPYHAQEFKLKKGIDVVI 242
R+ LVL PTRELA QV E F + ++G + +YGG Y Q L++G VV+
Sbjct: 203 --RSTQALVLAPTRELALQVAESFQSFANSLGGVNILPVYGGQAYGVQLSGLRRGAHVVV 260
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+ +G++DLS L+F VLDEADEML MGF EDVE ILG D +V LFSA
Sbjct: 261 GTPGRVIDHLAKGSLDLSDLRFMVLDEADEMLNMGFQEDVERILGDTPDGKQVA--LFSA 318
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+PS ++ +S ++L + ++ I + N++ + N+ L S + + I+
Sbjct: 319 TMPSGIRRLSKQYLNNPRE-ITVKSNQR--TAENITQDFLMVSHRNKLDALTRILEVTDF 375
Query: 363 GGRTIIF----TETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
I+F ET+E A +L D A A++GDI Q+QRE T+ + G+ LVAT+V
Sbjct: 376 EA-MIMFVRTKNETEELAERLCDRGFNAAAINGDIAQAQRERTVDQLKDGRLDILVATDV 434
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERES 477
AARGLD++ + + + P D E+Y+HR GRTGRAG +G A++ PR+ + K IER +
Sbjct: 435 AARGLDVDRITHVFNYDIPHDTESYVHRIGRTGRAGRSGRAILFVTPRERRLLKAIERAT 494
Query: 478 GVKFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFK 516
I P + + A+++T+ +SD + F+
Sbjct: 495 KSTLNEIDLPDVDAVNDVRKRKFAQSLTESLSDPQVGIFR 534
>gi|189499774|ref|YP_001959244.1| DEAD/DEAH box helicase [Chlorobium phaeobacteroides BS1]
gi|189495215|gb|ACE03763.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeobacteroides
BS1]
Length = 591
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 153/393 (38%), Positives = 220/393 (55%), Gaps = 26/393 (6%)
Query: 103 GESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLA 162
GE+ +S + + L+ G E+ P+Q T ++L GSD++G+A+TG GKT A
Sbjct: 6 GETVESTGFKDLGLSGQVLDALEKVGYETPTPVQLQTIPIILKGSDVLGQAQTGTGKTAA 65
Query: 163 FVLPILES--LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSC 219
F LP+L + L+N +P VLVL PTRELA QV E F Y +
Sbjct: 66 FALPLLSTIDLSNA------------SPQVLVLTPTRELALQVAEAFQRYAACMEDFHVL 113
Query: 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV 279
+YGG Y Q +L++G+ VV+GTPGR+ DHI R ++L LK VLDEADEMLRMGFV
Sbjct: 114 PIYGGQDYSGQLRRLRRGVHVVVGTPGRVMDHIRRQTLNLDGLKTLVLDEADEMLRMGFV 173
Query: 280 EDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRH 339
+DVE IL K +V LFSAT+PS ++ I+ K+L+ D + + ST R
Sbjct: 174 DDVEWILEKTPATRQVA--LFSATMPSEIRRITRKYLR-DFTEVAIKSKSSTVESTTQR- 229
Query: 340 IVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQ 395
LP S + + I+ G IIF TK +L++ L + AL+GD+ Q
Sbjct: 230 -FLPVSGHHKLDALTRILEIEHYDG-VIIFVRTKTQTVELSEKLRARGYASAALNGDMMQ 287
Query: 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN 455
+ RE T+ F+ + L+AT+VAARGLD+ + +I + P D E+Y+HR GRTGRAG
Sbjct: 288 NHREKTVGQFKKSVYNILIATDVAARGLDVERISHVINYDIPTDTESYVHRIGRTGRAGR 347
Query: 456 TGVAVMLYDPRKSSVSK-IERESGVKFEHISAP 487
+G A++ PR+ S+ + IER + + + P
Sbjct: 348 SGEAILFVTPREMSMLRTIERAIRKRIDRMELP 380
>gi|84494615|ref|ZP_00993734.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
gi|84384108|gb|EAP99988.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
Length = 540
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 152/378 (40%), Positives = 216/378 (57%), Gaps = 12/378 (3%)
Query: 94 EAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRA 153
EA +E ++ +E + S F I + L + GI + FPIQAMT + L G D++G+A
Sbjct: 19 EAAIEATKQATAE-VQSFSDFAIHPDIVSALAAHGITTPFPIQAMTLPVALGGHDIIGQA 77
Query: 154 RTGQGKTLAFVLPILES-LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG 212
+TG GKTL F +P+L + G K G+ P L + PTRELA QV D + G
Sbjct: 78 KTGTGKTLGFGIPLLNKVIARGDDKWDGFVHKGK-PQALAVAPTRELAVQVSADLERAGK 136
Query: 213 AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADE 272
A G+ +YGG Y Q L KG++VV+GTPGR+ D ++G++DLS K VLDEADE
Sbjct: 137 ARGIRVLTVYGGRAYEPQIDALTKGVEVVVGTPGRLIDLAKQGHLDLSHAKTVVLDEADE 196
Query: 273 MLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMK 332
ML +GF+ DVE +L QT+LFSAT+P V ++ +++ + I + +
Sbjct: 197 MLDLGFLPDVEKLLAMTSPGR--QTMLFSATMPGAVVALARRYM-TQPTHIRAMQEGEGD 253
Query: 333 ASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGR--TIIFTETKESASQLADLLP----GA 386
S V+ I + + + R + GR TI+F+ TK +A+++AD L A
Sbjct: 254 TSQTVKAITQHVYRAHAMDKVEMLARMLQANGRGLTIVFSRTKRTAAKVADDLAERGFAA 313
Query: 387 RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHR 446
A+HGD+ Q RE L FRSGK LVAT+VAARG+D+ +V +I + P D + Y+HR
Sbjct: 314 AAIHGDLGQGAREQALRAFRSGKVDVLVATDVAARGIDVENVTHVINYQCPEDEKTYVHR 373
Query: 447 SGRTGRAGNTGVAVMLYD 464
GRTGRAG TG+AV D
Sbjct: 374 IGRTGRAGQTGIAVTFVD 391
>gi|387887011|ref|YP_006317310.1| DEAD/DEAH box helicase [Francisella noatunensis subsp. orientalis
str. Toba 04]
gi|386871827|gb|AFJ43834.1| DEAD-box subfamily ATP-dependent helicase [Francisella noatunensis
subsp. orientalis str. Toba 04]
Length = 583
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 148/374 (39%), Positives = 215/374 (57%), Gaps = 20/374 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQ +L G D++G+A+TG GKT AF LP++ ++ RA
Sbjct: 26 GYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNM--------DLESRDRA 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F+ + + L C+YGG Y +Q LK+GI VV+GT G
Sbjct: 78 PQVLVLAPTRELAIQVAEQFEAFAKNIPNLNVVCIYGGQEYGSQIRALKQGIKVVVGTTG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHIE+G + L +L+ VLDEADEMLRMGF++DV +L V D + Q LLFSAT+P+
Sbjct: 138 RVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRYVLSHVSD--ECQRLLFSATIPT 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ I ++L++ K + K K + V + + + ++ + G
Sbjct: 196 DIADIIQEYLRNPCK---IQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLEVEETDG-V 251
Query: 367 IIFTETKESASQLADLLP--GAR--ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF +TK S ++AD L G R A++GD+QQSQRE + FRS K LVAT+V ARG
Sbjct: 252 IIFVKTKTSTIEVADNLKALGYRVAAINGDMQQSQREYIVDQFRSAKSDVLVATDVVARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSKI-ERESGVKF 481
+D+ + +I + P D + Y+HR GRTGRAG G ++ L ++ +I ER +G
Sbjct: 312 IDLERISHVINYDMPNDSDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRILERFTGSPM 371
Query: 482 EHISAPQPADIAKA 495
+ + P D+A++
Sbjct: 372 QEVFMPSAKDLAQS 385
>gi|425734748|ref|ZP_18853065.1| DEAD/DEAH box helicase [Brevibacterium casei S18]
gi|425480684|gb|EKU47848.1| DEAD/DEAH box helicase [Brevibacterium casei S18]
Length = 592
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 212/369 (57%), Gaps = 25/369 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES PIQA T ++ G D++G A+TG GKT AF LPIL L GRA
Sbjct: 30 GYESPSPIQAATIPALVAGRDVIGLAQTGTGKTAAFALPILSHLAEA----------GRA 79
Query: 188 ---PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
P LVL PTRELA QV E F Y + + +YGG Y Q LK+G VV+G
Sbjct: 80 SDGPFALVLTPTRELALQVAEAFTSYATNLDDFSVLPIYGGQSYGPQLAGLKRGAQVVVG 139
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ DH++RG++ L +L+ VLDEADEML+MGF ED+E I D+ +V LFSAT
Sbjct: 140 TPGRVIDHLKRGSLKLENLQHLVLDEADEMLKMGFAEDIEEIFNATGDSRQVA--LFSAT 197
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P+ + ++ K+L +D + + + K + +N+R L S + + I+
Sbjct: 198 MPTSIHRLTGKYL-NDPEEVRVAA--KSQTGSNIRQRYLMVQHSHKLDALTRILEVEEYD 254
Query: 364 GRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
G I+F TK++ +LA+ L A A++GDI Q RE T+ R GK LVAT+VA
Sbjct: 255 G-IIMFVRTKQATEELAEKLRARGFKASAINGDIPQQARERTVEMLREGKIDILVATDVA 313
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS-VSKIERESG 478
ARGLD+ + L++ + P D E+Y+HR GRTGRAG +G A++ PR+ + IER +
Sbjct: 314 ARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRSGEAILFITPREQRLLGSIERATK 373
Query: 479 VKFEHISAP 487
K E ++ P
Sbjct: 374 QKVEPLTLP 382
>gi|118470234|ref|YP_889292.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium smegmatis str. MC2 155]
gi|399989304|ref|YP_006569654.1| Cold-shock DEAD-box RNA helicase [Mycobacterium smegmatis str. MC2
155]
gi|441213695|ref|ZP_20975941.1| hypothetical protein D806_5114 [Mycobacterium smegmatis MKD8]
gi|118171521|gb|ABK72417.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium smegmatis str. MC2 155]
gi|399233866|gb|AFP41359.1| Cold-shock DEAD-box RNA helicase [Mycobacterium smegmatis str. MC2
155]
gi|440625659|gb|ELQ87505.1| hypothetical protein D806_5114 [Mycobacterium smegmatis MKD8]
Length = 581
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 163/422 (38%), Positives = 231/422 (54%), Gaps = 30/422 (7%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES IQA T +L GSD+VG A+TG GKT AF +PIL SK R
Sbjct: 40 GYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFAIPIL----------SKIDTSRRD 89
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC-LYGGAPYHAQEFKLKKGIDVVIGTPG 246
LVL PTRELA QV E F YG + + +YGG+ Y Q L++G VV+GTPG
Sbjct: 90 TQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSGLRRGAQVVVGTPG 149
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+ERG +DLS L + VLDEADEML MGF E+VE IL + +V LFSAT+P+
Sbjct: 150 RVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYKQVA--LFSATMPA 207
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ I+TK+L +++ K + N+ + + + + I+ G
Sbjct: 208 AIRKITTKYLHD---PVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILEV-EEGDAM 263
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK++ ++AD L A A++GDI Q+QRE T++ + G L+AT+VAARG
Sbjct: 264 IVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIATDVAARG 323
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKF 481
LD+ + +I + P D E+Y+HR GRTGRAG +G AV+ PR+ + K IE+ + K
Sbjct: 324 LDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKSIEKATRSKL 383
Query: 482 EHISAPQPADIAKAAGVEAAETITQVSDSV----IPAFKSAAEELLNNSGLSAAELLAKA 537
P D+ A+ +SDS+ I F+ E+ S + A+ +A A
Sbjct: 384 IEAELPSVEDVNAQ---RVAKFRDSISDSLNAPGIDLFRRLIEDYERESNVPLAD-IAAA 439
Query: 538 LA 539
LA
Sbjct: 440 LA 441
>gi|363422948|ref|ZP_09311020.1| dead/deah box helicase [Rhodococcus pyridinivorans AK37]
gi|359732360|gb|EHK81377.1| dead/deah box helicase [Rhodococcus pyridinivorans AK37]
Length = 626
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 158/410 (38%), Positives = 225/410 (54%), Gaps = 29/410 (7%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ L G ES PIQA T +L+G D+VG A+TG GKT AF +PIL + +
Sbjct: 28 QALSDVGYESPSPIQAATIPPLLEGRDVVGLAQTGTGKTAAFAVPILSRIDTSVKR---- 83
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDV 240
P LVL PTRELA QV E F Y + GL+ +YGG Y Q L++G V
Sbjct: 84 ------PQALVLAPTRELALQVAEAFGKYSVHIPGLSVLPIYGGQAYGVQLSGLRRGAQV 137
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
++GTPGR+ DH+ +G +D+S L+F VLDEADEML MGF EDVE IL D +V LF
Sbjct: 138 IVGTPGRVIDHLAKGTLDISELEFLVLDEADEMLTMGFQEDVERILADTPDTKQVA--LF 195
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P ++ +S ++LK D + I + K S N+ + S + + I+
Sbjct: 196 SATMPGAIRRLSKQYLK-DPQEITV--KSKTTTSANISQRWVLVSHQRKLDALTRILEVE 252
Query: 361 SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
+ IIF TK++ LA+ L A A++GDI Q+QRE T+ ++G LVAT
Sbjct: 253 TFEA-MIIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTINQLKNGTLDILVAT 311
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IER 475
+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG TG A++ PR+ + K IER
Sbjct: 312 DVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRTGDALLFVAPRERHLLKAIER 371
Query: 476 ESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNN 525
+ + P D+ A+ +++ +DS+ A S +L
Sbjct: 372 ATRQPLAEMQLPTVEDV-------NAQRVSKFNDSITEALASDHLQLFRT 414
>gi|384430474|ref|YP_005639834.1| DEAD/DEAH box helicase [Thermus thermophilus SG0.5JP17-16]
gi|333965942|gb|AEG32707.1| DEAD/DEAH box helicase domain protein [Thermus thermophilus
SG0.5JP17-16]
Length = 510
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 162/379 (42%), Positives = 222/379 (58%), Gaps = 22/379 (5%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L +G+ + PIQA + L+G DL+G+ARTG GKTLAF LPI E L P++
Sbjct: 14 EALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLA--PSQER-- 69
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
GR P LVL PTRELA QV + A L +YGG Y Q+ L +G D V
Sbjct: 70 ---GRKPRALVLAPTRELALQVASELSSV--APHLKVVAVYGGTGYGKQKEALLRGADAV 124
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
+ TPGR D++ +G +DLS ++ VLDEADEML MGF E+VE +L QTLLFS
Sbjct: 125 VATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPFR--QTLLFS 182
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
ATLPSW K ++ +++K + I+++ +E + +P R +V+ D++ +
Sbjct: 183 ATLPSWAKRLAERYMK-NPVLINVIKDEPVTYEEE----AVPAPVRGRLEVLSDLLYV-A 236
Query: 362 SGGRTIIFT----ETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
S R ++FT ET+E A L L A+A+HGD+ Q +RE L FR G+ LVAT+
Sbjct: 237 SPDRAMVFTRTKAETEEIAQGLLRLGHPAQAIHGDLSQGERERVLGAFRQGEVRVLVATD 296
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERE 476
VAARGLDI V L++ P EAY HRSGRTGRAG G V+LY PR + V +ER
Sbjct: 297 VAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERA 356
Query: 477 SGVKFEHISAPQPADIAKA 495
G +F+ ++ P P ++ +A
Sbjct: 357 VGRRFKRVNPPTPEEVLEA 375
>gi|374261655|ref|ZP_09620233.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
gi|363537749|gb|EHL31165.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
Length = 584
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 156/429 (36%), Positives = 232/429 (54%), Gaps = 23/429 (5%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F S + + L+ + PIQ T + L+G D + A+TG GKT AF LPIL+ +T
Sbjct: 11 FNFSDAINQALEDMKFTTPSPIQTQTIPLFLEGRDAIALAQTGTGKTAAFALPILQKITP 70
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEF 232
G+ L+L PTRELA QV E F++ G L GG Y Q
Sbjct: 71 N----------GQGTQALILAPTRELAIQVAEQFELLSARQHGTKVATLCGGQEYGRQLK 120
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
+L+ G +V+GTPGRI DHIE+G + LS+L+ +LDEADEMLRMGF+ED+E I+ K+ +
Sbjct: 121 QLRAGAQIVVGTPGRILDHIEKGTLQLSNLRTFILDEADEMLRMGFIEDIETIMAKLPEQ 180
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
++ LFSAT+P ++ I+ +L ++ +I++ S R L S +
Sbjct: 181 KQIG--LFSATMPHRIRQIANTYL-NNPASIEIRSETATVKSIEQR--FLFASGHQKPDA 235
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSG 408
+ ++ G I+F TK S ++A+LL A A+HGDI Q+ RE +A FR G
Sbjct: 236 LVRVLAVEEYQG-VIVFVRTKSSTEEVAELLQQQGLRAMAIHGDITQALRERIIAQFRQG 294
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS 468
LVAT+VAARGLD+ V +I + P D E Y+HR GRTGRAG +GVA++ P++S
Sbjct: 295 AIDILVATDVAARGLDVERVTHVINYDLPHDNETYVHRIGRTGRAGRSGVAILFVTPKES 354
Query: 469 S-VSKIERESGVKFEHISAPQPADIAKAAGVEAAETIT-QVSDSVIPAFKSAAEELLNNS 526
+S +ER + + ++ P I A IT ++ I +++ EE +
Sbjct: 355 RLISSVERHTRQRITKVNVPNDHMIQVARQQRFMANITARLEHENIHSYRKIVEEYIKEH 414
Query: 527 GLSAAELLA 535
+SA ++ A
Sbjct: 415 EVSAVDVAA 423
>gi|372269187|ref|ZP_09505235.1| DEAD/DEAH box helicase [Alteromonas sp. S89]
Length = 614
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 160/412 (38%), Positives = 226/412 (54%), Gaps = 34/412 (8%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +L+G D++G+A+TG GKT AF LP+L SL SK+
Sbjct: 27 GYETPSPIQAQTIPSLLEGRDVLGQAQTGTGKTAAFALPLLASLD----LKSKR------ 76
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV E Y + G +YGGA Y Q +LK+G+ +V+GTPG
Sbjct: 77 PQALVLAPTRELAIQVAEACQSYAANLKGFHVAPIYGGADYRGQIQQLKRGVQLVVGTPG 136
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+ +G +DLS+LK VLDEADEMLRMGF++DVE +L ++ + Q LFSAT+P
Sbjct: 137 RVMDHMRKGTLDLSNLKTLVLDEADEMLRMGFIDDVEWVLEQIPEER--QIALFSATMPR 194
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ I+ L + +D+ K + + +R P + + I+ T
Sbjct: 195 EIAKIARDHLDN---PVDVKIKVKTETAETIRQRYWPVGGLHKLDALTRILEAEPVDA-T 250
Query: 367 IIFTETKESASQLADLLPGAR-----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421
IIF TK + +LAD L AR AL+GD+ Q+ RE + ++GK +VAT+VAAR
Sbjct: 251 IIFVRTKNTTVELADKL-AARGFASAALNGDMAQNLREQVIDKLKAGKLDIVVATDVAAR 309
Query: 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVK 480
GLD+ + +I + P D EAYIHR GRTGRAG G A++ PR+ + + IER +
Sbjct: 310 GLDVKRISHVINYDIPYDTEAYIHRIGRTGRAGREGDAILFVAPRERRMLRVIERATKKS 369
Query: 481 FEHISAPQPADIAKAAGVEAAETITQ------VSDSVIPAFKSAAEELLNNS 526
E + P AKA E Q DS + F+ ++ L ++
Sbjct: 370 IERLELP----TAKAVNASRMEKFRQRISDTLAGDSDMAPFRDLVDQYLADN 417
>gi|271969585|ref|YP_003343781.1| hypothetical protein [Streptosporangium roseum DSM 43021]
gi|270512760|gb|ACZ91038.1| hypothetical protein Sros_8393 [Streptosporangium roseum DSM 43021]
Length = 697
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 139/347 (40%), Positives = 208/347 (59%), Gaps = 14/347 (4%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ L+++GI + FPIQ M + L+G D++G+ARTG GKT AF + +L+ + P K KK
Sbjct: 52 DALETEGIITPFPIQEMALPLALNGQDIIGQARTGTGKTYAFGVAMLQRVGK-PRKNRKK 110
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
P LV++PTRELA QV ED G +G +YGG Y Q LK+G+DV+
Sbjct: 111 ------PRGLVVVPTRELAVQVTEDLVTAAGKLGSRILTVYGGRAYEPQVEALKQGVDVI 164
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
+GTPGR+ D +++ ++DL + VLDEAD ML +GF+ D+E I+ + + K QT+LFS
Sbjct: 165 VGTPGRLLDLVKQKHLDLGQIDVLVLDEADRMLDLGFLPDIERIIKLIPE--KRQTMLFS 222
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
ATLP + +S ++L + + +A+ V + +++ +++C
Sbjct: 223 ATLPGEIVALSRRYLTRPTHVRAENNDAEAEATPQTTQFVWRAHRMDKIEIVGRLLQC-D 281
Query: 362 SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
G T+IF ETK + + + L A A+HGD+ Q QRE L FR+GK LVAT+
Sbjct: 282 GRGLTMIFCETKRACDMVVEQLKERGFAAAAVHGDLGQGQREQALRAFRNGKIDVLVATD 341
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
VAARG+D++DV ++ + P+D +AY+HR GRTGRAG TGVAV +
Sbjct: 342 VAARGIDVDDVTHVVNYDCPQDEKAYVHRIGRTGRAGKTGVAVTFVE 388
>gi|359774481|ref|ZP_09277848.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia effusa NBRC
100432]
gi|359308367|dbj|GAB20626.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia effusa NBRC
100432]
Length = 574
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 148/392 (37%), Positives = 222/392 (56%), Gaps = 22/392 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+R+ L G E+ PIQA T ++ G+D+VG A+TG GKT AF +PIL L +
Sbjct: 18 VRQALDDVGYETPSPIQAATIPPLMAGNDVVGLAQTGTGKTAAFAIPILSRLDSS----- 72
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGI 238
R P LVL PTRELA QV E F Y + + +YGG Y Q L++G
Sbjct: 73 -----ARKPQALVLAPTRELALQVSEAFGKYSSHMPDVRVLPIYGGQSYTVQLSGLRRGA 127
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
V++GTPGR+ DH+++G +D+S L+F VLDEADEML MGF EDVE IL D+ +V
Sbjct: 128 QVIVGTPGRVIDHLDKGTLDISQLEFLVLDEADEMLTMGFAEDVERILSDTPDSKQVA-- 185
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P + ++ K+LK+ ++ K + N+ L S + + ++
Sbjct: 186 LFSATMPKAIGRLAKKYLKN---PTEVAVESKTATAQNITQKYLQVSHQRKLDALTRVLE 242
Query: 359 CYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ G I+F TK++ +LA+ L A A++GD+ Q+QRE T+ ++ LV
Sbjct: 243 VETFDG-MIVFVRTKQATEELAERLRARGFSAVAINGDLAQAQRERTINQLKNSTIDILV 301
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-I 473
AT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + + I
Sbjct: 302 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLRAI 361
Query: 474 ERESGVKFEHISAPQPADIAKAAGVEAAETIT 505
E+ + E I P D+ + A++IT
Sbjct: 362 EKMTRQPLEEIDLPSVDDVNTQRKEKFADSIT 393
>gi|359424178|ref|ZP_09215300.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia amarae NBRC
15530]
gi|358240452|dbj|GAB04882.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia amarae NBRC
15530]
Length = 612
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 155/435 (35%), Positives = 238/435 (54%), Gaps = 23/435 (5%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E + G ES PIQA T +++ G D+VG A+TG GKT AF +PIL L +
Sbjct: 43 EAISDVGYESPSPIQAATIPVLMSGRDVVGLAQTGTGKTAAFAIPILSRLDDS------- 95
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC-LYGGAPYHAQEFKLKKGIDV 240
R P L+L PTRELA QV E F Y + +YGG Y Q LK+G V
Sbjct: 96 ---ARKPQALILAPTRELALQVAEAFGKYSAHMPKVKVLPIYGGQSYVVQLNGLKRGAQV 152
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
++GTPGR+ DH++RG +D+S L+F VLDEADEML MGF EDVE IL D+ +V LF
Sbjct: 153 IVGTPGRVIDHLDRGTLDISELEFLVLDEADEMLTMGFAEDVERILADTPDSKQVA--LF 210
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P + ++ ++L +D + I + K + ++N+ L S + + +
Sbjct: 211 SATMPKAISRLAQQYL-NDPEEIKV--KAKTETASNITQRYLQVSHQRKLDALTRFLEVE 267
Query: 361 SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
I+F TK++ +LA+ L A A++GD+ Q+QRE T+ ++G LVAT
Sbjct: 268 QFDA-MIVFVRTKQATEELAEKLRSRGFSAVAINGDLAQAQRERTINQLKNGTIDILVAT 326
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IER 475
+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + + IE+
Sbjct: 327 DVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALLFVSPRERHLLRAIEK 386
Query: 476 ESGVKFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKSAAEELLNNSGLSAAELL 534
+ I P D+ + AE+IT+ + + F+ E+ ++ ++ A++
Sbjct: 387 ATRSTLAEIGLPSVEDVNAQRVAKFAESITENLGSEHLDMFRKLIEDYARDNDVTMADIA 446
Query: 535 AKALAKAVVSAFLFS 549
A + FL +
Sbjct: 447 AALALETRDGGFLMA 461
>gi|89256685|ref|YP_514047.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
holarctica LVS]
gi|115315095|ref|YP_763818.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
holarctica OSU18]
gi|156502845|ref|YP_001428910.1| DEAD/DEAH box helicase [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|254367994|ref|ZP_04984014.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
holarctica 257]
gi|290954278|ref|ZP_06558899.1| DEAD/DEAH box helicase domain-containing protein [Francisella
tularensis subsp. holarctica URFT1]
gi|422939018|ref|YP_007012165.1| DEAD/DEAH box helicase [Francisella tularensis subsp. holarctica
FSC200]
gi|423051056|ref|YP_007009490.1| DEAD/DEAH box helicase [Francisella tularensis subsp. holarctica
F92]
gi|89144516|emb|CAJ79831.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
holarctica LVS]
gi|115129994|gb|ABI83181.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
holarctica OSU18]
gi|134253804|gb|EBA52898.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
holarctica 257]
gi|156253448|gb|ABU61954.1| DEAD/DEAH box helicase domain protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|407294169|gb|AFT93075.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
subsp. holarctica FSC200]
gi|421951778|gb|AFX71027.1| DEAD/DEAH box helicase [Francisella tularensis subsp. holarctica
F92]
Length = 569
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 150/375 (40%), Positives = 215/375 (57%), Gaps = 22/375 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQ +L G D++G+A+TG GKT AF LP L N AS+ RA
Sbjct: 26 GYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALP----LINNMDLASRD----RA 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F+ + V L C+YGG Y +Q LK+G+ VV+GT G
Sbjct: 78 PQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVKVVVGTTG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHIE+G + L +L+ VLDEADEMLRMGF++DV+ +L V + + Q LLFSAT+P+
Sbjct: 138 RVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVQFVLSHV--SEQCQRLLFSATIPT 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ I ++L++ K + K K + V + + + ++ + G
Sbjct: 196 DIADIIEEYLRNPCK---IQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG-V 251
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF +TK S ++AD L A++GD+QQSQRE + FRS K LVAT+V ARG
Sbjct: 252 IIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS--VSKIERESGVK 480
+D+ + +I + P D + Y+HR GRTGRAG G ++ L P K + +ER +G
Sbjct: 312 IDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLV-PLKEMRFLRTLERFTGSP 370
Query: 481 FEHISAPQPADIAKA 495
+ + P D+A++
Sbjct: 371 MQEVFMPSAKDLAQS 385
>gi|325295336|ref|YP_004281850.1| DEAD/DEAH box helicase [Desulfurobacterium thermolithotrophum DSM
11699]
gi|325065784|gb|ADY73791.1| DEAD/DEAH box helicase domain protein [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 425
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 151/384 (39%), Positives = 220/384 (57%), Gaps = 22/384 (5%)
Query: 115 RISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNG 174
++ + +++ L+ G ES PIQ + L+G D+VG+A+TG GKT AF +PI+E++ +
Sbjct: 17 QLDLKVQKSLEEMGFESPTPIQKEAIPLALEGYDIVGQAQTGTGKTAAFGIPIIENINSR 76
Query: 175 PTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
R +VL PTRELA QV + + G G+++ +YGG Q L
Sbjct: 77 E----------RGVKAIVLTPTRELAIQVAHELSLIGKNKGVSAYPIYGGVSIERQANIL 126
Query: 235 KKGID-VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
K+G + +V+GTPGR+KD I RG + L ++F VLDEAD+ML MGF+ED+E IL K
Sbjct: 127 KRGRNQIVVGTPGRVKDLISRGLLKLDRVRFAVLDEADQMLDMGFIEDIEEILSKT--PR 184
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
+ QTLLFSAT+P ++ + +LKS KTI VG + + R I + ++
Sbjct: 185 EKQTLLFSATMPYEIRKLIDNYLKSGYKTIK-VGKNLITPKVHQRIIFVKSEDKLKALEK 243
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409
G TI+F +TK A+++ L ARA+HGD+ Q QRE + F+ GK
Sbjct: 244 LL---KEHQGTSTIVFVKTKRDAAEIEKELQKRSINARAIHGDLSQRQRENVMKAFKEGK 300
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV-MLYDPRKS 468
TLVAT+VAARG+DI DV L+I E P + E+Y+HR GRTGRAG G A+ ++ D K
Sbjct: 301 VKTLVATDVAARGIDIKDVGLVINYELPENPESYVHRIGRTGRAGREGTAISLVADNEKR 360
Query: 469 SVSKIERESGVKFEHISAPQPADI 492
+ +I+ +K E A D+
Sbjct: 361 RIYRIKGLKHIKPEKFKANDLRDL 384
>gi|148242659|ref|YP_001227816.1| superfamily II DNA/RNA helicase [Synechococcus sp. RCC307]
gi|147850969|emb|CAK28463.1| Superfamily II DNA/RNA helicase [Synechococcus sp. RCC307]
Length = 560
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 152/382 (39%), Positives = 220/382 (57%), Gaps = 24/382 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L E L G E PIQA ++ G DL+G+A+TG GKT AF LP+L +
Sbjct: 26 LLEALTKCGYEQPSPIQAAAIPELMLGRDLLGQAQTGTGKTAAFALPLL----------A 75
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGI 238
+ R P VLVL PTRELA QV E F Y GL LYGG+ + Q KL++G+
Sbjct: 76 RINLEARHPQVLVLAPTRELAIQVSEAFQRYASCTPGLHVLPLYGGSDFRDQIHKLRRGV 135
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
VV+GTPGR+ DH+ +G +++S L+ VLDEADEMLRMGF++DV+ +L ++ ++ Q +
Sbjct: 136 HVVVGTPGRVMDHMRQGTLNVSQLETLVLDEADEMLRMGFIDDVKWVLEQL--PSERQVV 193
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAS-TNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P +K IS + L++ + I + +K AS RHI+LP + + ++
Sbjct: 194 LFSATMPPEIKRISQQHLQNPAEVI--IRTQKADASRIRQRHILLPHQQKLSALL--RVL 249
Query: 358 RCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTL 413
+ GG IIF TK +A+ L L+GD+ QS RE T+ + G+ L
Sbjct: 250 EAHGPGG-VIIFARTKAVTVTVAEALEAEGIACSVLNGDVPQSLRERTIERLKQGRIDVL 308
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSK 472
VAT+VAARGLD++ + L++ + P D EAY+HR GRTGRAG G A++ R + +
Sbjct: 309 VATDVAARGLDVDRIGLVVNYDAPFDSEAYVHRIGRTGRAGRQGDAILFLSYRERRLLHS 368
Query: 473 IERESGVKFEHISAPQPADIAK 494
+ER G + + P A+I +
Sbjct: 369 LERAVGSSIDAMDVPSDAEINQ 390
>gi|452946083|gb|EME51584.1| dead/deah box helicase [Rhodococcus ruber BKS 20-38]
Length = 538
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 150/362 (41%), Positives = 205/362 (56%), Gaps = 20/362 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQ +T + L G DL+G+ARTG GKT F +P+L LT T S T
Sbjct: 53 LAEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLHRLT---TAESGTTA 109
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFD-----VYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
P LV++PTREL QV +D + + G L +YGG PY Q LKKG+
Sbjct: 110 LDGTPRALVIVPTRELCLQVTQDLENAAKYLPGSTGSLKILSVYGGRPYETQVDVLKKGV 169
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
DVV+GTPGR+ D +G++ L + V+DEADEML +GF+ D+E ILG V D + QT+
Sbjct: 170 DVVVGTPGRLLDLANQGHLILGKIGVLVMDEADEMLDLGFLPDIERILGMVPD--RRQTM 227
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P + ++ FL S I E +V + +++++ +++
Sbjct: 228 LFSATMPGPIITLARTFL-SRPTHIRAEEPESSAVHERTNQLVYRAHALDKAELVARVLQ 286
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G T+IFT TK +A ++AD L A+HGD+ Q RE L FR GK LV
Sbjct: 287 AEGRGA-TMIFTRTKRTAQKVADELAERGFAVGAVHGDLGQIAREKALDKFRKGKIDVLV 345
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PRKSSV 470
AT+VAARG+DI+DV ++ + P D + Y+HR GRTGRAG TG+AV L D PR +
Sbjct: 346 ATDVAARGIDIDDVTHVVNYQCPEDEKTYVHRIGRTGRAGRTGIAVTLVDWDDIPRWQLI 405
Query: 471 SK 472
K
Sbjct: 406 DK 407
>gi|227502907|ref|ZP_03932956.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49725]
gi|227076329|gb|EEI14292.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49725]
Length = 452
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 147/365 (40%), Positives = 211/365 (57%), Gaps = 17/365 (4%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P + ++ + + L +GI F IQ +T + L+G DL+G+ARTG GKT F +P+
Sbjct: 8 PPTFAELGVAAEICDGLADRGIARTFAIQELTLPIALNGQDLIGQARTGMGKTFGFGVPL 67
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
L+ + + A P L+++PTRELA+QV D + + +YGG PY
Sbjct: 68 LDRVFDDADIAPPDG----TPRALIVVPTRELAQQVTADLQDAAAHLPVRLAAIYGGRPY 123
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q L++G+DVVIGTPGR+ D ERG++ L + VLDEADEML +GF+ +E IL
Sbjct: 124 EEQIKLLQRGVDVVIGTPGRLLDLHERGDLVLRHVAIVVLDEADEMLDLGFLPSIEAIL- 182
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVLPCS 345
+ D N QT+LFSAT+P + ++S +F+ K + + + T+ R +
Sbjct: 183 EALDGNAHQTMLFSATMPGAILNLSRQFM---HKPVHIRAESEADEVTHETTRKVTFQAH 239
Query: 346 SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVT 401
+ VI I++ GR+IIFT TK SA+QLAD L A+HGD+ Q RE +
Sbjct: 240 RMDKVAVIAHILQAQGR-GRSIIFTRTKRSAAQLADDLAERGFHVGAVHGDLGQKSREKS 298
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L FRSG+ LVAT++AARG+D++DV +I + P D +IHR GRTGRAG+TG AV
Sbjct: 299 LQAFRSGEVDILVATDIAARGIDVDDVTHVINYQVPDDPMTFIHRIGRTGRAGHTGTAVT 358
Query: 462 L--YD 464
L YD
Sbjct: 359 LVGYD 363
>gi|453075407|ref|ZP_21978194.1| dead/deah box helicase [Rhodococcus triatomae BKS 15-14]
gi|452763129|gb|EME21412.1| dead/deah box helicase [Rhodococcus triatomae BKS 15-14]
Length = 587
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 154/400 (38%), Positives = 221/400 (55%), Gaps = 29/400 (7%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G ES PIQA T ++ G+D+VG A+TG GKT AF +PIL S+
Sbjct: 30 LNDVGYESPSPIQAATIPPLMAGNDVVGLAQTGTGKTAAFAVPIL----------SRIDT 79
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
+ P LVL PTRELA QV E F Y + GL +YGG Y Q L++G V++
Sbjct: 80 EQKRPQALVLAPTRELALQVAEAFGKYSAHIPGLQVLPIYGGQSYGVQLSGLRRGAQVIV 139
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+E+G +DL+ L + VLDEADEML+MGF EDVE IL + + +V LFSA
Sbjct: 140 GTPGRVIDHLEKGTLDLTHLDYLVLDEADEMLKMGFQEDVEKILAETPEYKQVA--LFSA 197
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P ++ IS ++L +++ K +TN+ + + + + I+
Sbjct: 198 TMPPAIRKISKQYLHD---PVEITVKGKTSTATNITQRWVQVAHQRKLDALTRILEVEQF 254
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
IIF TK++ LA+ L A A++GDI Q+QRE T+ +SG LVAT+V
Sbjct: 255 EA-MIIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQLKSGALDILVATDV 313
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERES 477
AARGLD++ + ++ + P D E+Y+HR GRTGRAG TG A++ PR+ + K IER +
Sbjct: 314 AARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRTGDALLFVAPRERHLLKAIERAT 373
Query: 478 GVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKS 517
I P D+ A+ + + DS+ + S
Sbjct: 374 RQPLTEIQLPTVEDV-------NAQRVAKFGDSITESLNS 406
>gi|305682037|ref|ZP_07404841.1| ATP-dependent RNA helicase DeaD [Corynebacterium matruchotii ATCC
14266]
gi|305658510|gb|EFM48013.1| ATP-dependent RNA helicase DeaD [Corynebacterium matruchotii ATCC
14266]
Length = 721
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 149/407 (36%), Positives = 236/407 (57%), Gaps = 24/407 (5%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
P+ + +++ G E+ PIQA T ++LDG D++G A+TG GKT AF LPIL SL +
Sbjct: 82 PVVKAVENVGFETPSPIQAQTIPVLLDGHDVLGLAQTGTGKTAAFALPIL-SLIDADI-- 138
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG--LTSCCLYGGAPYHAQEFKLKK 236
R P L+L PTRELA QV + F V+ + ++ +YGG Y Q L++
Sbjct: 139 -------RHPQALILAPTRELALQVADSFQVFVDHLDGDISVLPIYGGQAYGIQLSGLRR 191
Query: 237 GIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQ 296
G +V+GTPGR+ DH+E+G++D+S L+F VLDEADEML MGF EDVE IL + +V
Sbjct: 192 GAQIVVGTPGRVIDHLEKGSLDISELRFLVLDEADEMLNMGFQEDVERILADTPEDKQVA 251
Query: 297 TLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDI 356
LFSAT+PS ++ +S +++ +D I + + + +TN+ L + + + I
Sbjct: 252 --LFSATMPSGIRRLSKQYM-NDPHEIQV--KSETRTNTNITQRFLNVAHRNKLDALTRI 306
Query: 357 IRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMT 412
+ I+F TK +LA+ L A A++GDI Q QRE T+ + G+
Sbjct: 307 LEVTEFEA-MIMFVRTKFETEELAEKLRARGFNAAAINGDIAQQQRERTVEQLKDGRLDI 365
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVS 471
LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR + +
Sbjct: 366 LVATDVAARGLDVERISHVLNYDIPSDTESYVHRIGRTGRAGRSGEAILFVTPRERRFLR 425
Query: 472 KIERESGVKFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKS 517
IER + + + P ++ ++ + A++IT+ + ++ + F++
Sbjct: 426 NIERATNAPLQEMELPTVDEVNESRKAKFADSITESLENTQVAVFRN 472
>gi|296139030|ref|YP_003646273.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162]
gi|296027164|gb|ADG77934.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola
DSM 20162]
Length = 602
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 155/407 (38%), Positives = 226/407 (55%), Gaps = 23/407 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G E+ PIQA T +L G+D+VG A+TG GKT AF +P+L SK G
Sbjct: 43 LAEVGYENPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPVL----------SKIDG 92
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
R P LVL PTRELA QV E F Y + +T +YGG Y Q L++G +++
Sbjct: 93 ESRTPQALVLAPTRELALQVSEAFGKYAVHMPNITVLPIYGGQSYGVQLSGLRRGAQIIV 152
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+E+G +DLS+L+F VLDEADEML MGF EDVE IL + +V LFSA
Sbjct: 153 GTPGRVIDHLEKGTLDLSNLEFLVLDEADEMLTMGFQEDVERILADTPEFKQVA--LFSA 210
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P ++ I+ K+L +++ K +N+ L + + + ++
Sbjct: 211 TMPPAIRKIAKKYLHD---PVEISVKAKTATGSNITQRYLQVAHQRKLDALTRLLEVEEF 267
Query: 363 GGRTIIFTETKESASQLADLL----PGARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G IIF TK + +LA+ L A A++GDI Q+QRE T+ + GK LVAT+V
Sbjct: 268 DG-MIIFVRTKSATEELAEKLRARGHAAAAINGDIVQAQRERTIGQLKDGKVDILVATDV 326
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERES 477
AARGLD+ + ++ + P D E+Y+HR GRTGRAG G A++ PR+ + + IE+ +
Sbjct: 327 AARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRKGDALLFVTPRERHLLRAIEKAT 386
Query: 478 GVKFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKSAAEELL 523
I P D+ + E+IT+ +S+ + F+ E+ +
Sbjct: 387 RQPLTEIGLPSVEDVNAHRVEKFGESITENLSNDHLQMFRRLIEDYV 433
>gi|397736750|ref|ZP_10503428.1| cold-shock DEAD box protein A [Rhodococcus sp. JVH1]
gi|396927331|gb|EJI94562.1| cold-shock DEAD box protein A [Rhodococcus sp. JVH1]
Length = 602
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 148/362 (40%), Positives = 209/362 (57%), Gaps = 20/362 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQ +T + L G DL+G+ARTG GKT F +P+L +++G T + G
Sbjct: 103 LDEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLHRISSGTTGTAALDG 162
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFD-----VYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
RA LV++PTREL QV +D + + G L +YGG PY Q L+KG
Sbjct: 163 TPRA---LVIVPTRELCIQVTKDLEGAAKYLKGEKNKLEVLAIYGGRPYETQIATLQKGA 219
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
DVV+GTPGR+ D +G++ L ++ VLDEADEML +GF+ D+E ILG V D K QT+
Sbjct: 220 DVVVGTPGRLLDLANQGHLILGKVEVLVLDEADEMLDLGFLPDIERILGMVPD--KRQTM 277
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P + ++ FL ++ +HI + +++++ +++
Sbjct: 278 LFSATMPGPIITLARTFLTQPTHIRAEQADDSAVHDRTSQHIYR-AHALDKAEMVARVLQ 336
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G T+IFT TK +A ++AD L ++HGD+ Q RE L FR+GK LV
Sbjct: 337 AEGRGA-TMIFTRTKRTAQKVADDLAERGFSVGSVHGDLNQVAREKALKAFRTGKIDVLV 395
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PRKSSV 470
AT+VAARG+DI+DV +I + P D + Y+HR GRTGRAG TG+AV L D PR +
Sbjct: 396 ATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGIAVTLVDWDDIPRWQLI 455
Query: 471 SK 472
K
Sbjct: 456 DK 457
>gi|111023319|ref|YP_706291.1| cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
gi|110822849|gb|ABG98133.1| probable cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
Length = 555
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 148/362 (40%), Positives = 209/362 (57%), Gaps = 20/362 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQ +T + L G DL+G+ARTG GKT F +P+L +++G T + G
Sbjct: 53 LDEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLHRISSGTTGTAALDG 112
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFD-----VYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
RA LV++PTREL QV +D + + G L +YGG PY Q L+KG
Sbjct: 113 TPRA---LVIVPTRELCIQVTKDLEGAAKYLKGEKNKLEVLAIYGGRPYETQIATLQKGA 169
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
DVV+GTPGR+ D +G++ L ++ VLDEADEML +GF+ D+E ILG V D K QT+
Sbjct: 170 DVVVGTPGRLLDLANQGHLILGKVEVLVLDEADEMLDLGFLPDIERILGMVPD--KRQTM 227
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P + ++ FL ++ +HI + +++++ +++
Sbjct: 228 LFSATMPGPIITLARTFLTQPTHIRAEQADDSAVHDRTSQHIYR-AHALDKAEMVARVLQ 286
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G T+IFT TK +A ++AD L ++HGD+ Q RE L FR+GK LV
Sbjct: 287 AEGRGA-TMIFTRTKRTAQKVADDLAERGFSVGSVHGDLNQVAREKALKAFRTGKIDVLV 345
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PRKSSV 470
AT+VAARG+DI+DV +I + P D + Y+HR GRTGRAG TG+AV L D PR +
Sbjct: 346 ATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGIAVTLVDWDDIPRWQLI 405
Query: 471 SK 472
K
Sbjct: 406 DK 407
>gi|325964224|ref|YP_004242130.1| DNA/RNA helicase [Arthrobacter phenanthrenivorans Sphe3]
gi|323470311|gb|ADX73996.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
Sphe3]
Length = 710
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 165/429 (38%), Positives = 230/429 (53%), Gaps = 30/429 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT-----NGPTKA 178
L+ G E PIQA T ++L+G D+VG A+TG GKT AF +P L L NGP++
Sbjct: 82 LQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRLAELHDLNGPSRK 141
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKG 237
++ LVL PTRELA QV E F Y + T +YGG+ Y Q L++G
Sbjct: 142 TQ---------ALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQLAGLRRG 192
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
VV+GTPGR+ DHI +G++DLS L++ VLDEADEMLRMGF EDVE I + + Q
Sbjct: 193 AQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQQT--PSDRQV 250
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+PS ++ +S ++L + ++ K N R L + + I+
Sbjct: 251 ALFSATMPSQIRRMSKQYLNN---PAEISVKSKTTTGANTRQRYLQVMGPHKLDAMTRIL 307
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
G I F TK + LAD L A A++GDI Q QRE T+ + G+ L
Sbjct: 308 EVEEFDG-VIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRIDIL 366
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSK 472
VAT+VAARGLD+ + +I + P D E+Y+HR GRTGRAG +G A++ PR K +
Sbjct: 367 VATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRS 426
Query: 473 IERESGVKFEHISAPQPADIAKAAGVEAAETITQV--SDSVIPAFKSAAEELLNNSGLSA 530
IE+ + E + P + + AE IT+ S+ V P F+ + A
Sbjct: 427 IEKATRQPVEQMHLPTAETVNTLRLGKFAERITETLASEDVAP-FRDLIASYEEEHNVPA 485
Query: 531 AELLAKALA 539
+E +A ALA
Sbjct: 486 SE-IAAALA 493
>gi|68536452|ref|YP_251157.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
gi|68264051|emb|CAI37539.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
Length = 713
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 169/469 (36%), Positives = 260/469 (55%), Gaps = 30/469 (6%)
Query: 73 EPVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESL 132
EP ++ +E + + +AKV PE ++ ++ E + P + + + +K G E
Sbjct: 43 EPQDVTNEAVESENAEAKV-PE---KDNQQSEEQQP-SFDGLGLPENVLAAVKKVGFEVP 97
Query: 133 FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLV 192
PIQA T ++++G D+VG A+TG GKT AF LPIL + SK R P LV
Sbjct: 98 SPIQAETIPVLMEGHDVVGLAQTGTGKTAAFALPILSRI-----DVSK-----RHPQALV 147
Query: 193 LLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDH 251
L PTRELA QV E F + +G + +YGG Y Q L++G +V+GTPGR+ DH
Sbjct: 148 LAPTRELALQVAESFQSFSEHLGGIHVLPIYGGQAYGVQLSGLRRGAHIVVGTPGRVIDH 207
Query: 252 IERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA-NKVQTLLFSATLPSWVKH 310
+E+G++D+S L+F VLDEADEML MGF EDVE IL ED + Q LFSAT+PS ++
Sbjct: 208 LEKGSLDISELRFMVLDEADEMLNMGFQEDVERIL---EDTPSDKQVALFSATMPSGIRR 264
Query: 311 ISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFT 370
+S ++L SD + I + + + S N+ L S + + I+ I+F
Sbjct: 265 LSKQYL-SDPREITVKATQ--RTSENIEQDYLLVSHRDKLDALTRILEITEFEA-MIMFV 320
Query: 371 ETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426
TK +LA+ L A A++GDI Q+ RE T+ + G+ LVAT+VAARGLD++
Sbjct: 321 RTKNETEELAERLRARGFNAAAINGDIPQNLRERTVDQLKDGRLDILVATDVAARGLDVD 380
Query: 427 DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKFEHIS 485
+ + + P D E+Y+HR GRTGRAG G A++ PR+ + K IER + + I
Sbjct: 381 RITHVFNYDIPHDTESYVHRIGRTGRAGRKGRAILFVTPRERRLLKSIERATKSRLNEIE 440
Query: 486 APQPADIAKAAGVEAAETITQ-VSDSVIPAFKSAAEELLNNSGLSAAEL 533
P + +A + +++T+ ++D I F+ +E ++ + A++
Sbjct: 441 LPTVDAVNEARKEKFRDSLTESLADPQIGIFRDLVKEYAESNEVELADI 489
>gi|227494914|ref|ZP_03925230.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436]
gi|226831366|gb|EEH63749.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436]
Length = 528
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 143/369 (38%), Positives = 213/369 (57%), Gaps = 14/369 (3%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F I+ + + L +KGI FPIQA+T + L G D++G+A+TG GKTL F LP L + +
Sbjct: 47 FGINTEICDALSAKGITYPFPIQALTLPVALAGRDIIGQAKTGTGKTLGFGLPTLMKV-H 105
Query: 174 GPTKASKKT--GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
GP A T Y P +V++PTREL KQV D + +YGGA + Q
Sbjct: 106 GPASAKYATEVHYQGHPQAMVIVPTRELCKQVAADLRAAAKQTSVRITEIYGGAAFEPQI 165
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
L KG D+++GTPGR+ D ++R + L + VLDEADEML +GF+ DVE++L +V
Sbjct: 166 DALTKGTDLIVGTPGRLIDLLKRKVLQLHGVNTVVLDEADEMLDLGFLPDVEILLSRVPQ 225
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
QT+LFSAT+P + ++ +++K +++ V+ ++ C + + +
Sbjct: 226 TR--QTMLFSATMPGEIVALARRYMKQPTHIRAQEADDQGATVKTVKQVIYRCHALNKIE 283
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407
V+ I++ G +IFT+TK +A+ L++ L +LHGD+ Q RE + FRS
Sbjct: 284 VVARILQARER-GLAVIFTKTKRTAATLSEDLSARGFAVASLHGDLGQGAREQAMRAFRS 342
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD--- 464
GK LVAT+VAARG+D++DV +I + P D + Y+HR GRTGRAG +G AV D
Sbjct: 343 GKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYLHRIGRTGRAGASGTAVTFVDWDD 402
Query: 465 -PRKSSVSK 472
PR +SK
Sbjct: 403 VPRWGLISK 411
>gi|383313717|ref|YP_005374572.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
P54B96]
gi|380869218|gb|AFF21692.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
P54B96]
Length = 442
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 145/368 (39%), Positives = 215/368 (58%), Gaps = 18/368 (4%)
Query: 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
S H + ++ + + L +GI F IQ +T + LDG D++GRARTG GKTL F
Sbjct: 4 STHKPTFAELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGRARTGMGKTLGFG 63
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
+P+L+ + + A+ P LV++PTRELA+QV ED + + +YGG
Sbjct: 64 VPLLDRVFD----AADVAELDGTPRALVVVPTRELAQQVGEDLERAARRTPVRVTTVYGG 119
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
PY Q L G+DVV+GTPGR+ D ++GN+ L + VLDEADEML +GF D+E
Sbjct: 120 RPYEEQIQVLTAGVDVVVGTPGRLIDLHQQGNLTLDHVAILVLDEADEMLDLGFFPDIEK 179
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVL 342
+LG ++ ++ QTLLFSAT+P V ++ F+ + I + E + T+ + +V
Sbjct: 180 LLGALK--HQHQTLLFSATMPGPVLTLARTFM---SRPIHIRAEEVNASHTHASIEQVVF 234
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQR 398
++ + ++ G+TIIFT TK +A++LA+ L G +HGD+ Q+ R
Sbjct: 235 QAHRMDKTAITARALQAKER-GKTIIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAAR 293
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E++L FR+G+ LVAT+VAARGLDI+DV +I + P Y+HR GRTGRAG+TG
Sbjct: 294 ELSLGMFRNGRVDILVATDVAARGLDIDDVTHVINYQTPDAPMTYVHRIGRTGRAGHTGT 353
Query: 459 AVML--YD 464
A+ L YD
Sbjct: 354 AITLVGYD 361
>gi|420153565|ref|ZP_14660520.1| DEAD/DEAH box helicase, partial [Actinomyces massiliensis F0489]
gi|394758926|gb|EJF41752.1| DEAD/DEAH box helicase, partial [Actinomyces massiliensis F0489]
Length = 528
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 150/360 (41%), Positives = 214/360 (59%), Gaps = 17/360 (4%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKASKKT 182
L GI FPIQA+ + L G D++G+A+TG GKTL F LP+L ++L G +
Sbjct: 87 LAGHGITHPFPIQALALPVALGGQDIIGQAKTGTGKTLGFALPLLMDTLGPGEDGWDEDP 146
Query: 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
G +P L++LPTRELAKQV E+ + + +YGG Y Q L KG +VV+
Sbjct: 147 ASG-SPQALIVLPTRELAKQVAEELTMAAAKRTVRIVQVYGGRAYEPQIEALSKGAEVVV 205
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ D ++RG +DL+ + VLDEADEML +GF+ DVE IL + QT+LFSA
Sbjct: 206 GTPGRLIDLMDRGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILARTR--TDRQTMLFSA 263
Query: 303 TLPSWVKHISTKFL-KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
T+P V ++ +++ K G+E M +T V+ +V + + +V+ I++ +
Sbjct: 264 TMPGAVVALARRYMSKPTHIRAQDPGDEGMTVTT-VQQVVYRTHALNKVEVVSRILQA-A 321
Query: 362 SGGRTIIFTETKESASQLADLLPGAR-----ALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
GRTIIF TK + +++A+ L AR ALHGD+ Q RE L FR+GK LVAT
Sbjct: 322 GRGRTIIFARTKRTCARVAEDL-AARGFATAALHGDLGQGAREQALRAFRNGKVDVLVAT 380
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PRKSSVSK 472
+VAARG+D++DV +I + P D + Y+HR GRTGRAG +G AV D PR ++K
Sbjct: 381 DVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGQSGTAVTFVDWDDTPRWRMIAK 440
>gi|306835508|ref|ZP_07468523.1| ATP-dependent RNA helicase DeaD [Corynebacterium accolens ATCC
49726]
gi|304568617|gb|EFM44167.1| ATP-dependent RNA helicase DeaD [Corynebacterium accolens ATCC
49726]
Length = 446
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 147/365 (40%), Positives = 211/365 (57%), Gaps = 17/365 (4%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P + ++ + + L +GI F IQ +T + L+G DL+G+ARTG GKT F +P+
Sbjct: 8 PPTFAELGVAAEICDGLADRGIARTFAIQELTLPIALNGQDLIGQARTGMGKTFGFGVPL 67
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
L+ + + A P L+++PTRELA+QV D + + +YGG PY
Sbjct: 68 LDRVFDDADIAPLDG----TPRALIVVPTRELAQQVTADLQDAAAHLPVRLASIYGGRPY 123
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q L++G+DVVIGTPGR+ D ERG++ L + VLDEADEML +GF+ +E IL
Sbjct: 124 EEQIKLLQRGVDVVIGTPGRLLDLHERGDLVLRHVAIVVLDEADEMLDLGFLPSIEAIL- 182
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVLPCS 345
+ D N QT+LFSAT+P + ++S +F+ K + + + T+ R +
Sbjct: 183 EALDGNAHQTMLFSATMPGAILNLSRQFM---NKPVHIRAESEADEVTHETTRKVTFQAH 239
Query: 346 SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVT 401
+ VI I++ GR+IIFT TK SA+QLAD L A+HGD+ Q RE +
Sbjct: 240 RMDKVPVIAHILQAQGR-GRSIIFTRTKRSAAQLADDLAERGFHVGAVHGDLGQKSREKS 298
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L FRSG+ LVAT++AARG+D++DV +I + P D +IHR GRTGRAG+TG AV
Sbjct: 299 LQAFRSGEVDILVATDIAARGIDVDDVTHVINYQVPDDPMTFIHRIGRTGRAGHTGTAVT 358
Query: 462 L--YD 464
L YD
Sbjct: 359 LVGYD 363
>gi|118497286|ref|YP_898336.1| DEAD/DEAH box helicase [Francisella novicida U112]
gi|194323589|ref|ZP_03057366.1| conserved hypothetical protein, putative [Francisella novicida FTE]
gi|118423192|gb|ABK89582.1| DEAD-box subfamily ATP-dependent helicase [Francisella novicida
U112]
gi|194322444|gb|EDX19925.1| conserved hypothetical protein, putative [Francisella tularensis
subsp. novicida FTE]
Length = 569
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 150/375 (40%), Positives = 214/375 (57%), Gaps = 22/375 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQ +L G D++G+A+TG GKT AF LP L N AS+ RA
Sbjct: 26 GYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALP----LINNMDLASRD----RA 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F+ + V L C+YGG Y +Q LK+G+ VV+GT G
Sbjct: 78 PQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVKVVVGTTG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHIE+G + L +L+ VLDEADEMLRMGF++DV+ +L V D + Q LLFSAT+P+
Sbjct: 138 RVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSD--ECQRLLFSATIPT 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ I ++L++ K + K K + V + + + ++ + G
Sbjct: 196 DIADIIEEYLRNPCK---IQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG-V 251
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF +TK S ++ D L A++GD+QQSQRE + FRS K LVAT+V ARG
Sbjct: 252 IIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS--VSKIERESGVK 480
+D+ + +I + P D + Y+HR GRTGRAG G ++ L P K + +ER +G
Sbjct: 312 IDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLV-PLKEMRFLRTLERFTGSP 370
Query: 481 FEHISAPQPADIAKA 495
+ + P D+A++
Sbjct: 371 MQEVFMPSAKDLAQS 385
>gi|419964790|ref|ZP_14480743.1| cold-shock DEAD-box protein [Rhodococcus opacus M213]
gi|414569902|gb|EKT80642.1| cold-shock DEAD-box protein [Rhodococcus opacus M213]
Length = 544
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 148/362 (40%), Positives = 209/362 (57%), Gaps = 20/362 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQ +T + L G DL+G+ARTG GKT F +P+L +++G T + G
Sbjct: 53 LDEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLHRISSGTTGTAALDG 112
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFD-----VYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
RA LV++PTREL QV +D + + G L +YGG PY Q L+KG
Sbjct: 113 TPRA---LVIVPTRELCIQVTKDLEGAAKYLKGEKNKLEVLAIYGGRPYETQIATLQKGA 169
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
DVV+GTPGR+ D +G++ L ++ VLDEADEML +GF+ D+E ILG V D K QT+
Sbjct: 170 DVVVGTPGRLLDLANQGHLILGKVEVLVLDEADEMLDLGFLPDIERILGMVPD--KRQTM 227
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P + ++ FL ++ +HI + +++++ +++
Sbjct: 228 LFSATMPGPIITLARTFLTQPTHIRAEQADDSAVHDRTSQHIYR-AHALDKAEMVARVLQ 286
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G T+IFT TK +A ++AD L ++HGD+ Q RE L FR+GK LV
Sbjct: 287 ADGRGA-TMIFTRTKRTAQKVADDLAERGFSVGSVHGDLNQVAREKALKAFRTGKIDVLV 345
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PRKSSV 470
AT+VAARG+DI+DV +I + P D + Y+HR GRTGRAG TG+AV L D PR +
Sbjct: 346 ATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGIAVTLVDWDDIPRWQLI 405
Query: 471 SK 472
K
Sbjct: 406 DK 407
>gi|260577582|ref|ZP_05845521.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
43734]
gi|258604306|gb|EEW17544.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
43734]
Length = 707
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 169/469 (36%), Positives = 260/469 (55%), Gaps = 30/469 (6%)
Query: 73 EPVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESL 132
EP ++ +E + + +AKV PE ++ ++ E + P + + + +K G E
Sbjct: 43 EPQDVTNEAVESENAEAKV-PE---KDNQQSEEQQP-SFDGLGLPENVLAAVKKVGFEVP 97
Query: 133 FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLV 192
PIQA T ++++G D+VG A+TG GKT AF LPIL + SK R P LV
Sbjct: 98 SPIQAETIPVLMEGHDVVGLAQTGTGKTAAFALPILSRI-----DVSK-----RHPQALV 147
Query: 193 LLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDH 251
L PTRELA QV E F + +G + +YGG Y Q L++G +V+GTPGR+ DH
Sbjct: 148 LAPTRELALQVAESFQSFSEHLGGIHVLPIYGGQAYGVQLSGLRRGAHIVVGTPGRVIDH 207
Query: 252 IERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA-NKVQTLLFSATLPSWVKH 310
+E+G++D+S L+F VLDEADEML MGF EDVE IL ED + Q LFSAT+PS ++
Sbjct: 208 LEKGSLDISELRFMVLDEADEMLNMGFQEDVERIL---EDTPSDKQVALFSATMPSGIRR 264
Query: 311 ISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFT 370
+S ++L SD + I + + + S N+ L S + + I+ I+F
Sbjct: 265 LSKQYL-SDPREITVKATQ--RTSENIEQDYLLVSHRDKLDALTRILEITEFEA-MIMFV 320
Query: 371 ETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426
TK +LA+ L A A++GDI Q+ RE T+ + G+ LVAT+VAARGLD++
Sbjct: 321 RTKNETEELAERLRARGFNAAAINGDIPQNLRERTVDQLKDGRLDILVATDVAARGLDVD 380
Query: 427 DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKFEHIS 485
+ + + P D E+Y+HR GRTGRAG G A++ PR+ + K IER + + I
Sbjct: 381 RITHVFNYDIPHDTESYVHRIGRTGRAGRKGRAILFVTPRERRLLKSIERATKSRLNEIE 440
Query: 486 APQPADIAKAAGVEAAETITQ-VSDSVIPAFKSAAEELLNNSGLSAAEL 533
P + +A + +++T+ ++D I F+ +E ++ + A++
Sbjct: 441 LPTVDAVNEARKEKFRDSLTESLADPQIGIFRDLVKEYAESNEVELADI 489
>gi|407277792|ref|ZP_11106262.1| dead/deah box helicase [Rhodococcus sp. P14]
Length = 538
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 149/364 (40%), Positives = 209/364 (57%), Gaps = 24/364 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQ +T + L G DL+G+ARTG GKT F +P+L LT T S T
Sbjct: 53 LAEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLHRLT---TAESGTTA 109
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFD-----VYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
P LV++PTREL QV +D + + G L +YGG PY Q LKKG+
Sbjct: 110 LDGTPRALVIVPTRELCLQVTQDLENAAKYLPGSTGALKILSVYGGRPYETQVDVLKKGV 169
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
DVV+GTPGR+ D +G++ L + V+DEADEML +GF+ D+E ILG V D + QT+
Sbjct: 170 DVVVGTPGRLLDLANQGHLILGKIGVLVMDEADEMLDLGFLPDIERILGMVPD--RRQTM 227
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR--HIVLPCSSSARSQVIPDI 356
LFSAT+P + ++ FL + + E ++ + R +V + +++++ +
Sbjct: 228 LFSATMPGPIITLARTFLT---RPTHIRAEEPESSAVHERTNQLVYRAHALDKAELVARV 284
Query: 357 IRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMT 412
++ G T+IFT TK +A ++AD L A+HGD+ Q RE L FR GK
Sbjct: 285 LQAEGRGA-TMIFTRTKRTAQKVADELAERGFAVGAVHGDLGQIAREKALDKFRKGKIDV 343
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PRKS 468
LVAT+VAARG+DI+DV ++ + P D + Y+HR GRTGRAG TG+AV L D PR
Sbjct: 344 LVATDVAARGIDIDDVTHVVNYQCPEDEKTYVHRIGRTGRAGRTGIAVTLVDWDDIPRWQ 403
Query: 469 SVSK 472
+ K
Sbjct: 404 LIDK 407
>gi|254369546|ref|ZP_04985557.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
subsp. holarctica FSC022]
gi|157122500|gb|EDO66635.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
subsp. holarctica FSC022]
Length = 569
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 150/375 (40%), Positives = 215/375 (57%), Gaps = 22/375 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQ +L G D++G+A+TG GKT AF LP L N AS+ RA
Sbjct: 26 GYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALP----LINNMDLASRD----RA 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F+ + V L C+YGG Y +Q LK+G+ VV+GT G
Sbjct: 78 PQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVKVVVGTTG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHIE+G + L +L+ VLDEADEMLRMGF++DV+ +L V + + Q LLFSAT+P+
Sbjct: 138 RVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHV--SEQCQRLLFSATIPT 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ I ++L++ K + K K + V + + + ++ + G
Sbjct: 196 DIADIIEEYLRNPCK---IQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG-V 251
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF +TK S ++AD L A++GD+QQSQRE + FRS K LVAT+V ARG
Sbjct: 252 IIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS--VSKIERESGVK 480
+D+ + +I + P D + Y+HR GRTGRAG G ++ L P K + +ER +G
Sbjct: 312 IDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLV-PLKEMRFLRTLERFTGSP 370
Query: 481 FEHISAPQPADIAKA 495
+ + P D+A++
Sbjct: 371 MQEVFMPSAKDLAQS 385
>gi|88854845|ref|ZP_01129511.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
gi|88816006|gb|EAR25862.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
Length = 757
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 147/346 (42%), Positives = 206/346 (59%), Gaps = 18/346 (5%)
Query: 123 KLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKT 182
+L S G ES FPIQA T VL G D++GR +TG GKT+AF P++E L K
Sbjct: 386 QLASMGAESPFPIQAATIPDVLAGKDVLGRGKTGSGKTIAFGAPLVERLME--NNGGKDR 443
Query: 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
GR P L+L PTRELA+Q+ +VGL + + GG P + Q L +G+DV+I
Sbjct: 444 QMGRKPRALILAPTRELAQQIDRTIQPIARSVGLFTTTIVGGVPQYKQVAALTRGVDVII 503
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
TPGR++D IE+G +DLS +K VLDEAD M +GF+E V+ IL + + Q LLFSA
Sbjct: 504 ATPGRVEDLIEQGRLDLSQVKVTVLDEADHMCDLGFLEPVQRILRETSEGG--QKLLFSA 561
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
TL V + +FL D ++ G + +AS+ + H VL + II+ S+
Sbjct: 562 TLDKGVATLVKEFL-VDPAVHEVAGED--QASSTIDHKVLLIEQRDKRA----IIKQLSA 614
Query: 363 G-GRTIIFTETKESASQLADLL-----PGARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
G G+T++FT T+ A ++A+ L P A +LHGD+ QS+R L SGK LVAT
Sbjct: 615 GTGKTLVFTRTRAFAEEMAEFLSMGGTP-ATSLHGDLNQSRRTRNLQMLTSGKVNVLVAT 673
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
+VAARG+ ++D+ L+IQ + P + + Y+HR+GRTGRAG G V L
Sbjct: 674 DVAARGIHVDDISLVIQADAPEEYKTYLHRAGRTGRAGKAGTVVTL 719
>gi|226365506|ref|YP_002783289.1| ATP-dependent DEAD-box RNA helicase DeaD [Rhodococcus opacus B4]
gi|226243996|dbj|BAH54344.1| ATP-dependent DEAD-box RNA helicase DeaD [Rhodococcus opacus B4]
Length = 587
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 154/400 (38%), Positives = 222/400 (55%), Gaps = 29/400 (7%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G ES PIQA T +L G+D+VG A+TG GKT AF +PIL SK
Sbjct: 26 LSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPIL----------SKIDL 75
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
++P LVL PTRELA QV E F Y + GL +YGG Y Q L++G VV+
Sbjct: 76 TQKSPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSGLRRGAHVVV 135
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+E+G +DLS L + VLDEADEML+MGF EDVE IL + +V LFSA
Sbjct: 136 GTPGRVIDHLEKGTLDLSKLAYLVLDEADEMLKMGFQEDVERILSDTPEYKQVA--LFSA 193
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P ++ IS ++L +++ K ++N+ + + + + ++
Sbjct: 194 TMPGAIRKISKQYLHD---PVEITVKSKTSTASNISQRYVQVAHQRKLDALTRVLEVEDF 250
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G IIF TK++ LA+ L A A++GDI Q+QRE T+ +SG LVAT+V
Sbjct: 251 GA-MIIFVRTKQATEDLAERLRSRGFSAAAINGDIVQAQRERTIGQLKSGALDILVATDV 309
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERES 477
AARGLD++ + ++ + P D E+Y+HR GRTGRAG G A++ PR+ + K IE+ +
Sbjct: 310 AARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGEALLFVAPRERHLLKAIEKAT 369
Query: 478 GVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKS 517
+ P D+ A+ +++ DS+ + S
Sbjct: 370 RQPLAEMQLPSVDDV-------NAQRVSKFGDSITESLTS 402
>gi|336325995|ref|YP_004605961.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100]
gi|336101977|gb|AEI09797.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100]
Length = 786
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 156/424 (36%), Positives = 233/424 (54%), Gaps = 37/424 (8%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E +K G E+ PIQ T ++++G+D+VG A+TG GKT AF LPIL + P+K
Sbjct: 131 EAVKKVGFEAPSPIQEQTIPVLMEGNDVVGLAQTGTGKTAAFALPILARID--PSK---- 184
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDV 240
R P LVL PTRELA QV E F+ + +G + +YGG Y Q L++G +
Sbjct: 185 ----RHPQALVLAPTRELALQVAESFESFATHLGGIHVLPIYGGQAYGIQLSGLRRGAHI 240
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGR+ DH+ +G++D+S L+F VLDEADEML MGF EDVE IL + +V LF
Sbjct: 241 VVGTPGRVIDHLNKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPEDKQVA--LF 298
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P+ ++ +S ++L +D + I + ++ S N+ L + + + + I+
Sbjct: 299 SATMPAGIRRLSKQYL-NDPQEITVKSTQR--TSENIEQDYLFVNHRNKLEALTRILEVT 355
Query: 361 SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
I+F TK +LA+ L A A++GDI Q+QRE T+ + G+ LVAT
Sbjct: 356 EFEA-MIMFVRTKNETEELAERLRARGFNAAAINGDIAQAQRERTVDQLKDGRLDILVAT 414
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IER 475
+VAARGLD++ + + + P D E+Y+HR GRTGRAG +G A++ PR+ + K IER
Sbjct: 415 DVAARGLDVDRITHVFNYDIPHDTESYVHRIGRTGRAGRSGRAILFVTPRERRLLKAIER 474
Query: 476 ESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLA 535
+ I P ++ V+D+ F+ A +E L + L L
Sbjct: 475 ATKSTLNEIELP---------------SVDAVNDARKEKFREALQESLGDPQLGVFRELV 519
Query: 536 KALA 539
A
Sbjct: 520 TEFA 523
>gi|384515128|ref|YP_005710220.1| hypothetical protein CULC809_00587 [Corynebacterium ulcerans 809]
gi|334696329|gb|AEG81126.1| hypothetical protein CULC809_00587 [Corynebacterium ulcerans 809]
Length = 441
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 144/368 (39%), Positives = 216/368 (58%), Gaps = 18/368 (4%)
Query: 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
S H + ++ + + L +GI F IQ +T + LDG D++G+ARTG GKTL F
Sbjct: 4 STHKPTFAELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGQARTGMGKTLGFG 63
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
+P+L+ + + A+ P LV++PTRELA+QV ED ++ + +YGG
Sbjct: 64 VPLLDRVFD----AADVAELDGTPRALVVVPTRELAQQVGEDLELAARHTPVRVTTVYGG 119
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
PY Q L KG+DVV GTPGR+ D ++G++ L + VLDEADEML +GF D+E
Sbjct: 120 RPYEEQIHVLDKGVDVVAGTPGRLIDLHQQGHLILDHVAILVLDEADEMLDLGFFPDIEK 179
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVL 342
+LG + ++ QTLLFSAT+P V ++ F+ + I + E + T+ + +V
Sbjct: 180 LLGAL--THQHQTLLFSATMPGPVLTLARTFM---LRPIHIRAEEVNASHTHASIEQVVF 234
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQR 398
++ + ++ + G+TIIFT TK +A++LA+ L G +HGD+ Q+ R
Sbjct: 235 QAHRMDKTAITARALQAHER-GKTIIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAAR 293
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E++L+ FR + LVAT+VAARGLDI+DV +I + P D Y+HR GRTGRAG+TG
Sbjct: 294 ELSLSMFRDSRVDILVATDVAARGLDIDDVTHVINYQTPDDPMTYVHRIGRTGRAGHTGT 353
Query: 459 AVML--YD 464
A+ L YD
Sbjct: 354 AITLVGYD 361
>gi|208779079|ref|ZP_03246425.1| conserved hypothetical protein [Francisella novicida FTG]
gi|254374120|ref|ZP_04989602.1| ATP-dependent RNA helicase [Francisella novicida GA99-3548]
gi|151571840|gb|EDN37494.1| ATP-dependent RNA helicase [Francisella novicida GA99-3548]
gi|208744879|gb|EDZ91177.1| conserved hypothetical protein [Francisella novicida FTG]
Length = 569
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 150/375 (40%), Positives = 214/375 (57%), Gaps = 22/375 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQ +L G D++G+A+TG GKT AF LP L N AS+ RA
Sbjct: 26 GYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALP----LINNMDLASRD----RA 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F+ + V L C+YGG Y +Q LK+G+ VV+GT G
Sbjct: 78 PQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVKVVVGTTG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHIE+G + L +L+ VLDEADEMLRMGF++DV+ +L V D + Q LLFSAT+P+
Sbjct: 138 RVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSD--ECQRLLFSATIPT 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ I ++L++ K + K K + V + + + ++ + G
Sbjct: 196 DIADIIEEYLRNPCK---IQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG-V 251
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF +TK S ++ D L A++GD+QQSQRE + FRS K LVAT+V ARG
Sbjct: 252 IIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS--VSKIERESGVK 480
+D+ + +I + P D + Y+HR GRTGRAG G ++ L P K + +ER +G
Sbjct: 312 IDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLV-PLKEMRFLRTLERFTGSP 370
Query: 481 FEHISAPQPADIAKA 495
+ + P D+A++
Sbjct: 371 MQEVFMPSAKDLAQS 385
>gi|116671594|ref|YP_832527.1| DEAD/DEAH box helicase [Arthrobacter sp. FB24]
gi|116611703|gb|ABK04427.1| ATP-dependent RNA helicase CsdA [Arthrobacter sp. FB24]
Length = 747
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 164/429 (38%), Positives = 230/429 (53%), Gaps = 30/429 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT-----NGPTKA 178
L+ G E PIQA T ++L+G D+VG A+TG GKT AF +P L L NGP++
Sbjct: 105 LQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRLAELHDLNGPSRK 164
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKG 237
++ LVL PTRELA QV E F Y + T +YGG+ Y Q L++G
Sbjct: 165 TQ---------ALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQLAGLRRG 215
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
VV+GTPGR+ DHI +G++DLS L++ VLDEADEMLRMGF EDVE I + + Q
Sbjct: 216 AQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQQT--PSDRQV 273
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+PS ++ +S ++L + ++ K N R L + + I+
Sbjct: 274 ALFSATMPSQIRRMSKQYLNN---PAEISVKSKTTTGANTRQRYLQVMGPHKLDALTRIL 330
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
G I F TK + LAD L A A++GDI Q QRE T+ + G+ L
Sbjct: 331 EVEEFDG-VIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRIDIL 389
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSK 472
VAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR K +
Sbjct: 390 VATDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRS 449
Query: 473 IERESGVKFEHISAPQPADIAKAAGVEAAETITQV--SDSVIPAFKSAAEELLNNSGLSA 530
IE+ + E + P + + AE IT+ S+ V P F+ + A
Sbjct: 450 IEKATRQPVEQMHLPTAETVNTLRLGKFAERITETLASEDVAP-FRDLISSYEEEHNVPA 508
Query: 531 AELLAKALA 539
+E +A ALA
Sbjct: 509 SE-IAAALA 516
>gi|424851819|ref|ZP_18276216.1| LOW QUALITY PROTEIN: DEAD/DEAH box helicase domain-containing
protein, partial [Rhodococcus opacus PD630]
gi|356666484|gb|EHI46555.1| LOW QUALITY PROTEIN: DEAD/DEAH box helicase domain-containing
protein, partial [Rhodococcus opacus PD630]
Length = 526
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 147/362 (40%), Positives = 208/362 (57%), Gaps = 20/362 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQ +T + L G DL+G+ARTG GKT F +P+L +++G T + G
Sbjct: 103 LDEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLHRISSGTTGTAALDG 162
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFD-----VYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
P LV++PTREL QV +D + + G L +YGG PY Q L+KG
Sbjct: 163 ---TPRALVIVPTRELCIQVTKDLEGAAKYLKGEKNKLEVLAIYGGRPYETQIATLQKGA 219
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
DVV+GTPGR+ D +G++ L ++ VLDEADEML +GF+ D+E ILG V D K QT+
Sbjct: 220 DVVVGTPGRLLDLANQGHLILGKVEVLVLDEADEMLDLGFLPDIERILGMVPD--KRQTM 277
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P + ++ FL ++ +HI + +++++ +++
Sbjct: 278 LFSATMPGPIITLARTFLTQPTHIRAEQADDSAVHDRTSQHIYR-AHALDKAEMVARVLQ 336
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G T+IFT TK +A ++AD L ++HGD+ Q RE L FR+GK LV
Sbjct: 337 ADGRGA-TMIFTRTKRTAQKVADDLAERGFSVGSVHGDLNQVAREKALKAFRTGKIDVLV 395
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PRKSSV 470
AT+VAARG+DI+DV +I + P D + Y+HR GRTGRAG TG+AV L D PR +
Sbjct: 396 ATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGIAVTLVDWDDIPRWQLI 455
Query: 471 SK 472
K
Sbjct: 456 DK 457
>gi|189347343|ref|YP_001943872.1| DEAD/DEAH box helicase [Chlorobium limicola DSM 245]
gi|189341490|gb|ACD90893.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245]
Length = 610
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 157/399 (39%), Positives = 232/399 (58%), Gaps = 24/399 (6%)
Query: 97 VEEQERGESEHPNAV--SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRAR 154
++E++ E P+ + S ++ PL L+ G E PIQA T ++L+G D++G+A+
Sbjct: 10 LQEKDSMIEEQPSILNFSNLELAEPLLRALEEVGYEKPTPIQAQTIPLLLEGRDVLGQAQ 69
Query: 155 TGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV 214
TG GKT AF LP+L ++ T+ P LVL PTRELA QV E F Y +
Sbjct: 70 TGTGKTAAFALPVLSNIVLSKTE----------PQALVLTPTRELAIQVAEAFHRYAEYL 119
Query: 215 -GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273
G +YGG Y Q LK+G+ VV+GTPGR+ DH+ RG++ LSSL+ VLDEADEM
Sbjct: 120 KGFHVVPIYGGQDYGTQLRMLKRGVHVVVGTPGRVMDHMRRGSLSLSSLQCLVLDEADEM 179
Query: 274 LRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKA 333
LRMGF++DVE IL + ++ +V LFSAT+P+ ++ I+ K LKS + I + N+
Sbjct: 180 LRMGFIDDVEWILDQTPESRQVA--LFSATMPAPIRRIAQKHLKSPAEVI--IQNKTTTV 235
Query: 334 STNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARAL 389
T +R S + V+ I+ G +IF TK +LA+ L A AL
Sbjct: 236 ET-IRQRYWIVGGSHKLDVLTRILEFEPFDG-ILIFVRTKTMTLELAEKLQARGYAASAL 293
Query: 390 HGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 449
+GD+ Q+QRE T+ + G ++AT+VAARGLD++ + +I + P D E+Y+HR GR
Sbjct: 294 NGDMAQNQRERTVDQLKDGSLSIVIATDVAARGLDVDRISHVINYDIPSDTESYVHRIGR 353
Query: 450 TGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487
TGRAG +G A++ PR K+ + IE+ + + E + P
Sbjct: 354 TGRAGRSGEAILFVSPREKNMLYAIEKATRKRIELMELP 392
>gi|432334488|ref|ZP_19586164.1| cold-shock DEAD-box protein [Rhodococcus wratislaviensis IFP 2016]
gi|430778572|gb|ELB93819.1| cold-shock DEAD-box protein [Rhodococcus wratislaviensis IFP 2016]
Length = 544
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 148/362 (40%), Positives = 209/362 (57%), Gaps = 20/362 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQ +T + L G DL+G+ARTG GKT F +P+L +++G T + G
Sbjct: 53 LDEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLHRISSGTTGTAALDG 112
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFD-----VYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
RA LV++PTREL QV +D + + G L +YGG PY Q L+KG
Sbjct: 113 TPRA---LVIVPTRELCIQVTKDLEGAAKYLKGEKNKLEVLAIYGGRPYETQIATLQKGA 169
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
DVV+GTPGR+ D +G++ L ++ VLDEADEML +GF+ D+E ILG V D K QT+
Sbjct: 170 DVVVGTPGRLLDLANQGHLILGKVEVLVLDEADEMLDLGFLPDIERILGMVPD--KRQTM 227
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P + ++ FL ++ +HI + +++++ +++
Sbjct: 228 LFSATMPGPIITLARTFLTQPTHIRAEQADDSAVHDRTSQHIYR-AHALDKAEMVARVLQ 286
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G T+IFT TK +A ++AD L ++HGD+ Q RE L FR+GK LV
Sbjct: 287 ADGRGA-TMIFTRTKRTAQKVADDLAERGFSVGSVHGDLNQVAREKALKAFRTGKIDVLV 345
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PRKSSV 470
AT+VAARG+DI+DV +I + P D + Y+HR GRTGRAG TG+AV L D PR +
Sbjct: 346 ATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGIAVTLVDWDDIPRWQLI 405
Query: 471 SK 472
K
Sbjct: 406 DK 407
>gi|300857956|ref|YP_003782939.1| hypothetical protein cpfrc_00538 [Corynebacterium
pseudotuberculosis FRC41]
gi|375288122|ref|YP_005122663.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
3/99-5]
gi|384504137|ref|YP_005680807.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
1002]
gi|384506229|ref|YP_005682898.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
C231]
gi|384508317|ref|YP_005684985.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
I19]
gi|385806992|ref|YP_005843389.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
267]
gi|387136078|ref|YP_005692058.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
42/02-A]
gi|300685410|gb|ADK28332.1| hypothetical protein cpfrc_00538 [Corynebacterium
pseudotuberculosis FRC41]
gi|302205685|gb|ADL10027.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
C231]
gi|302330237|gb|ADL20431.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
1002]
gi|308275920|gb|ADO25819.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
I19]
gi|348606523|gb|AEP69796.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
42/02-A]
gi|371575411|gb|AEX39014.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
3/99-5]
gi|383804385|gb|AFH51464.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
267]
Length = 441
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 145/368 (39%), Positives = 215/368 (58%), Gaps = 18/368 (4%)
Query: 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
S H + ++ + + L +GI F IQ +T + LDG D++GRARTG GKTL F
Sbjct: 4 STHKPTFAELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGRARTGMGKTLGFG 63
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
+P+L+ + + A+ P LV++PTRELA+QV ED + + +YGG
Sbjct: 64 VPLLDRVFD----AADVAELDGTPRALVVVPTRELAQQVGEDLERAARRTPVRVTTVYGG 119
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
PY Q L G+DVV+GTPGR+ D ++GN+ L + VLDEADEML +GF D+E
Sbjct: 120 RPYEEQIQVLTAGVDVVVGTPGRLIDLHQQGNLTLDHVAILVLDEADEMLDLGFFPDIEK 179
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVL 342
+LG ++ ++ QTLLFSAT+P V ++ F+ + I + E + T+ + +V
Sbjct: 180 LLGALK--HQHQTLLFSATMPGPVLTLARTFM---SRPIHIRAEEVNASHTHASIEQVVF 234
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQR 398
++ + ++ G+TIIFT TK +A++LA+ L G +HGD+ Q+ R
Sbjct: 235 QAHRMDKTAITARALQAKER-GKTIIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAAR 293
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E++L FR+G+ LVAT+VAARGLDI+DV +I + P Y+HR GRTGRAG+TG
Sbjct: 294 ELSLGMFRNGRVDILVATDVAARGLDIDDVTHVINYQTPDAPMTYVHRIGRTGRAGHTGT 353
Query: 459 AVML--YD 464
A+ L YD
Sbjct: 354 AITLVGYD 361
>gi|358445609|ref|ZP_09156207.1| putative ATP-dependent RNA helicase [Corynebacterium casei UCMA
3821]
gi|356608477|emb|CCE54475.1| putative ATP-dependent RNA helicase [Corynebacterium casei UCMA
3821]
Length = 410
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 155/408 (37%), Positives = 231/408 (56%), Gaps = 27/408 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ L ++ I F IQ +T + L+G+DL+G+ARTG GKT F +P+L+ + + A+
Sbjct: 9 DALAARDINHTFAIQELTLPIALNGTDLIGQARTGMGKTYGFGVPLLDRVFD----AADV 64
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
P LV++PTRELA QV D + + + + GG + AQ+ L+ G+DVV
Sbjct: 65 PELDGTPRALVVVPTRELAVQVASDLSIAAAQIPVRITTILGGRDFDAQKQALRSGVDVV 124
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
+GTPGR+ D +R ++ L + VLDEADEML +GF+ D+E IL +ED+ QT+LFS
Sbjct: 125 VGTPGRLLDLYQRKDLRLDKVSVLVLDEADEMLDLGFLPDIEKILAALEDSPH-QTMLFS 183
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVLPCSSSARSQVIPDIIRC 359
AT+P + ++ F+K + + + + + A T+ R +V + V+ I++
Sbjct: 184 ATMPGAIVRLARSFMK---QPVHIRADAESSAHTHASTRQVVFQAHRMDKLPVLSRILQI 240
Query: 360 YSSGGRTIIFTETKESASQ----LADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
RTI+FT TK +A+Q LADL A+HGD+ Q RE L+GFR GK LVA
Sbjct: 241 -PERERTIVFTRTKRTAAQVAQELADLGFTVGAVHGDLHQQARERALSGFRDGKVPILVA 299
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML--YDPRKSSVSKI 473
T+VAARG+DI+DV +I + P D Y+HR GRTGRAGN+G A+ L YD ++
Sbjct: 300 TDVAARGIDIDDVTHVINYQVPDDAMTYVHRIGRTGRAGNSGTAITLVGYD-------EL 352
Query: 474 ERESGVKFE-HISAPQPADIAKAAG--VEAAETITQVSDSVIPAFKSA 518
+ G+ E + P+P + +EA + DSV PA K A
Sbjct: 353 VKWQGINSELGLEQPEPPQWFSTSPEFLEALDIPADAKDSVGPARKVA 400
>gi|358446581|ref|ZP_09157126.1| putative ATP-dependent RNA helicase [Corynebacterium casei UCMA
3821]
gi|356607542|emb|CCE55468.1| putative ATP-dependent RNA helicase [Corynebacterium casei UCMA
3821]
Length = 675
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 146/415 (35%), Positives = 231/415 (55%), Gaps = 22/415 (5%)
Query: 99 EQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQG 158
E + +++P + + +++ + G + PIQ+ T ++++G D+VG A+TG G
Sbjct: 50 EDKNSANDNPQGFANLGLPDNVQDAVAKVGYTTPSPIQSETIPILMEGRDVVGLAQTGTG 109
Query: 159 KTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LT 217
KT AF LP+L S+ R P LVL PTRELA QV + F + +G +
Sbjct: 110 KTAAFALPVL----------SQIDINARHPQALVLAPTRELALQVADSFQSFADHLGRIE 159
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
+YGG Y Q L++G +++GTPGR+ DH+E+G++D+S L+F VLDEADEML MG
Sbjct: 160 VLPIYGGQAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMG 219
Query: 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337
F EDVE IL + +V LFSAT+P+ ++ +S ++L + ++ + + + N+
Sbjct: 220 FQEDVERILADTPEEKQVA--LFSATMPNGIRRLSKQYLNN---PAEVTVKSQQRTNDNI 274
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFT----ETKESASQLADLLPGARALHGDI 393
+ L + A+ I+ I+F ET+E A +L D A A++GDI
Sbjct: 275 KQRFLLTAHRAKLDAFTRILEVTDYDA-MIVFCRTKHETEEVAEKLRDAGYNAAAINGDI 333
Query: 394 QQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA 453
Q+QRE T+ + G+ LVAT+VAARGLD++ + ++ + P D E+Y+HR GRTGRA
Sbjct: 334 AQNQRERTVDQLKDGRLDILVATDVAARGLDVDRITHVVNFDIPNDTESYVHRIGRTGRA 393
Query: 454 GNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQV 507
G TG A++ PR + + IER + + E + P ++ A IT+V
Sbjct: 394 GRTGEAILFVTPRERRMLRSIERVTNARLEEMELPTVDEVNAKRKENFASQITEV 448
>gi|225022855|ref|ZP_03712047.1| hypothetical protein CORMATOL_02901 [Corynebacterium matruchotii
ATCC 33806]
gi|224944379|gb|EEG25588.1| hypothetical protein CORMATOL_02901 [Corynebacterium matruchotii
ATCC 33806]
Length = 715
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 149/407 (36%), Positives = 236/407 (57%), Gaps = 24/407 (5%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
P+ + +++ G E+ PIQA T ++LDG D++G A+TG GKT AF LPIL SL +
Sbjct: 89 PVVKAVENVGFETPSPIQAQTIPVLLDGHDVLGLAQTGTGKTAAFALPIL-SLIDAEI-- 145
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG--LTSCCLYGGAPYHAQEFKLKK 236
R P L+L PTRELA QV + F V+ + ++ +YGG Y Q L++
Sbjct: 146 -------RHPQALILAPTRELALQVADSFQVFVDHLDGDISVLPIYGGQAYGIQLSGLRR 198
Query: 237 GIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQ 296
G +V+GTPGR+ DH+E+G++D+S L+F VLDEADEML MGF EDVE IL + +V
Sbjct: 199 GAQIVVGTPGRVIDHLEKGSLDISELRFLVLDEADEMLNMGFQEDVERILADTPEEKQVA 258
Query: 297 TLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDI 356
LFSAT+PS ++ +S +++ +D I + + + +TN+ L + + + I
Sbjct: 259 --LFSATMPSGIRRLSKQYM-NDPHEIQV--KSETRTNTNITQRFLNVAHRNKLDALTRI 313
Query: 357 IRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMT 412
+ I+F TK +LA+ L A A++GDI Q QRE T+ + G+
Sbjct: 314 LEVTEFEA-MIMFVRTKFETEELAEKLRARGFNAAAINGDIAQQQRERTVEQLKDGRLDI 372
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVS 471
LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR + +
Sbjct: 373 LVATDVAARGLDVERISHVLNYDIPSDTESYVHRIGRTGRAGRSGEAILFVTPRERRFLR 432
Query: 472 KIERESGVKFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKS 517
IER + + + P ++ ++ + A++IT+ + ++ + F++
Sbjct: 433 NIERATNAPLQEMELPTVDEVNESRKAKFADSITESLENTQVAVFRN 479
>gi|187931511|ref|YP_001891495.1| DEAD/DEAH box helicase [Francisella tularensis subsp. mediasiatica
FSC147]
gi|187712420|gb|ACD30717.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
subsp. mediasiatica FSC147]
Length = 569
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 150/375 (40%), Positives = 215/375 (57%), Gaps = 22/375 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQ +L G D++G+A+TG GKT AF LP L N AS+ RA
Sbjct: 26 GYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALP----LINNMDLASRD----RA 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F+ + V L C+YGG Y +Q LK+G+ VV+GT G
Sbjct: 78 PQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVKVVVGTTG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHIE+G + L +L+ VLDEADEMLRMGF++DV+ +L V + + Q LLFSAT+P+
Sbjct: 138 RVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHV--SEQCQRLLFSATIPT 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ I ++L++ K + K K + V + + + ++ + G
Sbjct: 196 DIADIIEEYLRNPCK---IQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG-V 251
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF +TK S ++AD L A++GD+QQSQRE + FRS K LVAT+V ARG
Sbjct: 252 IIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS--VSKIERESGVK 480
+D+ + +I + P D + Y+HR GRTGRAG G ++ L P K + +ER +G
Sbjct: 312 IDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLV-PLKEMRFLRTLERFTGSP 370
Query: 481 FEHISAPQPADIAKA 495
+ + P D+A++
Sbjct: 371 MQEVFMPSAKDLAQS 385
>gi|384510410|ref|YP_005689988.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
PAT10]
gi|341824349|gb|AEK91870.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
PAT10]
Length = 441
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 145/368 (39%), Positives = 215/368 (58%), Gaps = 18/368 (4%)
Query: 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
S H + ++ + + L +GI F IQ +T + LDG D++GRARTG GKTL F
Sbjct: 4 STHKPTFAELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGRARTGMGKTLGFG 63
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
+P+L+ + + A+ P LV++PTRELA+QV ED + + +YGG
Sbjct: 64 VPLLDRVFD----AADVAELDGTPRALVVVPTRELAQQVGEDLERAARRTPVRVTTVYGG 119
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
PY Q L G+DVV+GTPGR+ D ++GN+ L + VLDEADEML +GF D+E
Sbjct: 120 RPYEEQIQVLTAGVDVVVGTPGRLIDLHQQGNLTLDHVAILVLDEADEMLDLGFFPDIEK 179
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVL 342
+LG ++ ++ QTLLFSAT+P V ++ F+ + I + E + T+ + +V
Sbjct: 180 LLGALK--HQHQTLLFSATMPGPVLTLARTFM---SRPIHIRAEEVNASHTHASIEQVVF 234
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQR 398
++ + ++ G+TIIFT TK +A++LA+ L G +HGD+ Q+ R
Sbjct: 235 QAHRMDKTAITARALQAKER-GKTIIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAAR 293
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E++L FR+G+ LVAT+VAARGLDI+DV +I + P Y+HR GRTGRAG+TG
Sbjct: 294 ELSLGMFRNGRVDILVATDVAARGLDIDDVTHVINYQTPDAPMTYVHRIGRTGRAGHTGT 353
Query: 459 AVML--YD 464
A+ L YD
Sbjct: 354 AITLVGYD 361
>gi|297571784|ref|YP_003697558.1| DEAD/DEAH box helicase [Arcanobacterium haemolyticum DSM 20595]
gi|296932131|gb|ADH92939.1| DEAD/DEAH box helicase domain protein [Arcanobacterium haemolyticum
DSM 20595]
Length = 520
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 146/392 (37%), Positives = 228/392 (58%), Gaps = 15/392 (3%)
Query: 92 EPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVG 151
EP A +E + + + + +S P+ + L +KGI FPIQA+T + L GSD++G
Sbjct: 20 EPAADIEAAGKDLNLEEKTFADYGVSAPIVDALAAKGISHPFPIQALTLPVALKGSDIIG 79
Query: 152 RARTGQGKTLAFVLPILESLTNGPTKAS-KKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210
+A+TG GKTL F +P++E GP++ + AP L ++PTRELAKQV +D
Sbjct: 80 QAKTGTGKTLGFGIPMIERCI-GPSEPGFDALAHPGAPQGLAVVPTRELAKQVAQDLRDA 138
Query: 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270
+ +YGG Y Q L+KG ++++GTPGR+ D ++ ++L +++ VLDEA
Sbjct: 139 AKNRSIRIVEVYGGRAYEPQIKDLEKGAEIIVGTPGRLIDLMKHRTLNLGAVRAVVLDEA 198
Query: 271 DEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK 330
DEML +GF+EDVE IL T+LFSAT+P V ++ +++ +++
Sbjct: 199 DEMLDLGFLEDVEKILSATPPTR--HTMLFSATMPGPVIAMARRYMSHATHIRAQAHDDE 256
Query: 331 MKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR--- 387
+VR +V + + +V+ I++ G TIIFT TK +A+++A+ L AR
Sbjct: 257 STTVQSVRQVVYRAHALNKIEVLARILQARGR-GLTIIFTRTKRTAARVAEDL-AARGFA 314
Query: 388 --ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIH 445
ALHGD+ Q RE L FR GK LVAT+VAARG+D+++V +I + P D + Y+H
Sbjct: 315 TGALHGDLGQGAREQALRAFRHGKIDVLVATDVAARGIDVDNVTHVINYQAPEDEKTYVH 374
Query: 446 RSGRTGRAGNTGVAVMLYD----PRKSSVSKI 473
R GRTGRAG++G A+ D P+ + ++K+
Sbjct: 375 RIGRTGRAGHSGTAITFVDWEDTPKWAVINKL 406
>gi|134301686|ref|YP_001121654.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis WY96-3418]
gi|421751456|ref|ZP_16188502.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis AS_713]
gi|421753307|ref|ZP_16190305.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 831]
gi|421757037|ref|ZP_16193925.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 80700103]
gi|421758898|ref|ZP_16195737.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 70102010]
gi|424674217|ref|ZP_18111140.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 70001275]
gi|134049463|gb|ABO46534.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis WY96-3418]
gi|409087570|gb|EKM87662.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 831]
gi|409087605|gb|EKM87695.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis AS_713]
gi|409091594|gb|EKM91587.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 70102010]
gi|409092950|gb|EKM92911.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 80700103]
gi|417435154|gb|EKT90074.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 70001275]
Length = 569
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 150/375 (40%), Positives = 215/375 (57%), Gaps = 22/375 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQ +L G D++G+A+TG GKT AF LP L N AS+ RA
Sbjct: 26 GYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALP----LINNMDLASRD----RA 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F+ + V L C+YGG Y +Q LK+G+ VV+GT G
Sbjct: 78 PQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVKVVVGTTG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHIE+G + L +L+ VLDEADEMLRMGF++DV+ +L V + + Q LLFSAT+P+
Sbjct: 138 RVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQS--QRLLFSATIPT 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ I ++L++ K + K K + V + + + ++ + G
Sbjct: 196 DIADIIEEYLRNPCK---IQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG-V 251
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF +TK S ++AD L A++GD+QQSQRE + FRS K LVAT+V ARG
Sbjct: 252 IIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS--VSKIERESGVK 480
+D+ + +I + P D + Y+HR GRTGRAG G ++ L P K + +ER +G
Sbjct: 312 IDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLV-PLKEMRFLRTLERFTGSP 370
Query: 481 FEHISAPQPADIAKA 495
+ + P D+A++
Sbjct: 371 MQEVFMPSAKDLAQS 385
>gi|453382103|dbj|GAC83310.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia paraffinivorans
NBRC 108238]
Length = 580
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 158/427 (37%), Positives = 239/427 (55%), Gaps = 24/427 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+R + G E+ PIQA T ++ G D+VG A+TG GKT AF +PIL L S
Sbjct: 27 VRAAISDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAIPILSRL-----DTS 81
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGI 238
KT P L+L PTRELA QV E F Y + + +YGG Y Q L++G
Sbjct: 82 AKT-----PQALILAPTRELALQVSEAFGRYSAHMPEVKVLPIYGGQSYGVQLAGLRRGA 136
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
V++GTPGR+ DH++R +D+S+L+F VLDEADEML MGF EDVE IL + D+ +V
Sbjct: 137 QVIVGTPGRVIDHLDRKTLDISNLEFLVLDEADEMLTMGFAEDVERILAETPDSKQVA-- 194
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+PS ++ ++ ++L +D + I + K + N+ L S + + +
Sbjct: 195 LFSATMPSAIRRLAQRYL-NDPQEITV--KSKTATAQNITQRYLQVSHQRKLDALTRFLE 251
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
I+F TK++ +LA+ L A A++GD+ Q+QRE T+ ++G LV
Sbjct: 252 VEEFDA-MIVFVRTKQATEELAEKLRSRGLSAVAINGDLAQAQRERTINQLKNGSIDILV 310
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-I 473
AT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + + I
Sbjct: 311 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALLFVSPRERHLLRAI 370
Query: 474 ERESGVKFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKSAAEELLNNSGLSAAE 532
ER + + I P D+ + A++ITQ +S + F+ E ++ A+
Sbjct: 371 ERATRQELTEIGLPSVDDVNAQRVAKFADSITQNLSSEHLDLFRGLVENYAREHDVTMAD 430
Query: 533 LLAKALA 539
+A ALA
Sbjct: 431 -IAAALA 436
>gi|408421077|ref|YP_006762491.1| cold-shock DEAD box protein DeaD [Desulfobacula toluolica Tol2]
gi|405108290|emb|CCK81787.1| DeaD: cold-shock DEAD box protein [Desulfobacula toluolica Tol2]
Length = 598
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 152/403 (37%), Positives = 225/403 (55%), Gaps = 22/403 (5%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
+S P+ L+ G E+ PIQAMT ++ D++G+ARTG GKT AF LP+L
Sbjct: 14 MNLSPPVFSALQDVGYETPTPIQAMTIPHLIRNKDVLGQARTGTGKTAAFALPLL----- 68
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEF 232
S+ + P VLVL PTRELA QV E F YG + GL +YGG Y Q
Sbjct: 69 -----SRIDLDNKRPQVLVLTPTRELAIQVAESFKTYGARMKGLNVLSVYGGQSYGIQLN 123
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
+LKKG+ VV+GTPGR+ DH+ + + + L +LDEADEML MGF++DVE IL +
Sbjct: 124 QLKKGVHVVVGTPGRLMDHMRKKTVSFADLFCVILDEADEMLHMGFIDDVEWILDRTPPD 183
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QT LFSAT+P ++ I+ K+L S ++ N ++ ++ + + ++
Sbjct: 184 S--QTALFSATMPRPIQKIAQKYLTSPEEFFIKPDNTELNT---IKQQYWMVNGAKKAHA 238
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSG 408
+ I+ S G I+F +TK + +LA +L A AL+GD+ Q+ RE T+ ++
Sbjct: 239 LTRILEAVSFDG-VIVFVKTKTATLELAKILEDKGFKAEALNGDLAQNARERTVNRLKNS 297
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS 468
LVAT+VAARGLD++ + +I + P V+ Y+HR GRTGRAG TG A++ +
Sbjct: 298 HIDILVATDVAARGLDVDRISHVINYDMPSKVDPYVHRIGRTGRAGRTGEAILFVSRNER 357
Query: 469 SVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDS 510
+ K IE+ + K + IS P I K + + ITQ +S
Sbjct: 358 WMLKVIEKATKQKIQEISLPSNKTINKKRIADFKQAITQTLES 400
>gi|377568438|ref|ZP_09797626.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia terrae NBRC
100016]
gi|377534326|dbj|GAB42791.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia terrae NBRC
100016]
Length = 590
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 147/393 (37%), Positives = 219/393 (55%), Gaps = 22/393 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+R + G E+ PIQA T +L G D+VG A+TG GKT AF +PIL L
Sbjct: 29 VRAAVTDVGYETPSPIQAATIPTLLSGRDVVGLAQTGTGKTAAFAIPILSRLDTS----- 83
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGI 238
R P L+L PTRELA QV E F Y + + +YGG Y Q L++G
Sbjct: 84 -----ARTPQALILAPTRELALQVSEAFGRYSAHMPEVKVLPIYGGQSYGVQLAGLRRGA 138
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
V++GTPGR+ DH+++ +D+S L+F VLDEADEML MGF EDVE IL + D +V
Sbjct: 139 QVIVGTPGRVIDHLDKKTLDISGLEFLVLDEADEMLTMGFAEDVERILAETPDTKQVA-- 196
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+PS ++ ++ ++L S + ++ K + N+ L S + + +
Sbjct: 197 LFSATMPSAIRRLAQRYLNSPQ---EITVKAKTATAQNITQRYLQVSHQRKLDALTRFLE 253
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ I+F TK++ +LA+ L A A++GD+ Q+QRE T+ ++G LV
Sbjct: 254 VETFDA-MIVFVRTKQATEELAEKLRSRGFSAVAINGDLAQAQRERTINQLKNGSIDILV 312
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-I 473
AT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + + I
Sbjct: 313 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALLFVSPRERHLLRAI 372
Query: 474 ERESGVKFEHISAPQPADIAKAAGVEAAETITQ 506
ER + I P D+ + A++ITQ
Sbjct: 373 ERATRQTLTEIGLPSVDDVNAQRVAKFADSITQ 405
>gi|221133986|ref|ZP_03560291.1| ATP-dependent RNA helicase [Glaciecola sp. HTCC2999]
Length = 622
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 159/430 (36%), Positives = 238/430 (55%), Gaps = 32/430 (7%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ L+ G E+ PIQA + ++L+G DL+G+A+TG GKT AF LP+L ++ +
Sbjct: 20 QALEKVGYETPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANIDVEES----- 74
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGIDV 240
P +LVL PTRELA QV E F VY + + +YGG Y Q +LK+G+ V
Sbjct: 75 -----FPQLLVLAPTRELAIQVAEAFQVYASFSKKIRVLPIYGGQSYDNQIRQLKRGVQV 129
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGR+ DHI+R + L LKF VLDEADEMLRMGF++DVELIL + QT LF
Sbjct: 130 VVGTPGRVIDHIQRKTLKLDRLKFLVLDEADEMLRMGFIDDVELILS--HSPKEKQTALF 187
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P +K I+ ++L + K + + K+ ++ +R + + + + I+
Sbjct: 188 SATMPGPIKKITERYL-HEPKHVKIAS--KVSTASTIRQRYCQVAGHHKLEALTRILEVE 244
Query: 361 SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
G I+F TK + +LAD L L+GDI Q RE T+ +SG L+AT
Sbjct: 245 QFDG-VIVFVRTKTATLELADKLSARGYDVEPLNGDIPQKSRERTVERLKSGSIDILIAT 303
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIER 475
+V ARGLD+ V +I + P D E+Y+HR GRTGRAG G A++ R K + +IE+
Sbjct: 304 DVVARGLDVERVSHVINFDIPYDTESYVHRIGRTGRAGRQGDAILFISHREKRLLFQIEK 363
Query: 476 ESGVKFEHISAPQPADIAKAAGVEAAETITQVSD-----SVIPAFKSAAEELLNNSGLSA 530
+ E + P +++ ++ V E++ + + S+IP E++ +
Sbjct: 364 TTKQSIEQMPIPSISEMNESRLVRFKESVVEAIEDDSIQSLIPII-----EMIKAETEAD 418
Query: 531 AELLAKALAK 540
E+L ALAK
Sbjct: 419 PEVLMAALAK 428
>gi|312197808|ref|YP_004017869.1| DEAD/DEAH box helicase [Frankia sp. EuI1c]
gi|311229144|gb|ADP81999.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
Length = 566
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 157/428 (36%), Positives = 223/428 (52%), Gaps = 29/428 (6%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ESE + P+ L G E PIQA T +LDG D+VG A+TG GKT AF
Sbjct: 3 ESEDQPTFHDLGLGSPVLRALTELGYEVPSPIQAGTIPALLDGRDVVGLAQTGTGKTAAF 62
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LPIL S+ A LVL PTREL QV E F Y + GL +Y
Sbjct: 63 ALPIL----------SRIDARSTATQALVLAPTRELVLQVAEAFGRYAHHLTGLHVLPVY 112
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG Y Q ++G VV+GTPGR+ DH+ERG +DL L+ VLDEADEMLRMGF E+V
Sbjct: 113 GGQAYAPQLAGFRRGAQVVVGTPGRVIDHLERGTLDLGGLRMLVLDEADEMLRMGFQEEV 172
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
+ IL DA +V LFSAT+P+ ++ IS ++L+ +++ + + N R L
Sbjct: 173 DRILADTPDAKQVA--LFSATMPAPIRRISRQYLRD---PVEITVRARTVTAANTRQRFL 227
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
+ + + ++ IIF TK + +A+ L A++GD+ Q QR
Sbjct: 228 TVAGPRKMDALTRVLEVEPFEA-MIIFVRTKSATEDVAERLRSRGFATEAINGDLSQPQR 286
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E +A R G LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG +G
Sbjct: 287 EKLIAQLRDGTLDLLVATDVAARGLDVERITHVVNYDIPTDPESYVHRIGRTGRAGRSGE 346
Query: 459 AVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKS 517
A++L PR K ++ IE+ + + P PAD+ A + + D++ A +
Sbjct: 347 ALLLVTPREKGLLAAIEKATRQPLTEMELPTPADV-------NARRVAKFHDAITAALDA 399
Query: 518 AAEELLNN 525
A + +
Sbjct: 400 PAHAVFRD 407
>gi|374335166|ref|YP_005091853.1| ATP-dependent RNA helicase [Oceanimonas sp. GK1]
gi|372984853|gb|AEY01103.1| ATP-dependent RNA helicase [Oceanimonas sp. GK1]
Length = 596
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 147/379 (38%), Positives = 211/379 (55%), Gaps = 22/379 (5%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ L G E IQA +L G D++G A+TG GKT AF LP+L ++ G
Sbjct: 21 QALTDAGYEQPSAIQAAAIPTLLTGRDVLGLAQTGTGKTAAFALPMLSRISGG------- 73
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDV 240
Y P VLVL PTRELA QV E F+ Y + +YGG Y +Q LK+G+D+
Sbjct: 74 NAY---PQVLVLAPTRELAIQVAESFENYAKYQKDIRIVSIYGGQAYDSQIRALKRGVDI 130
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGR+ DH+ RG + L SL+ VLDEADEMLRMGF++DVE IL D Q LF
Sbjct: 131 VVGTPGRVMDHMRRGTLKLDSLQALVLDEADEMLRMGFIDDVEWILEHTPDTR--QIALF 188
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P ++ ++ K+LK D + + + + AS R+ + + + + ++
Sbjct: 189 SATMPPAIQRVAQKYLK-DPQEVRIANKTRTNASIRQRYWFV--RGMPKQEALCRLVETE 245
Query: 361 SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
+ ++F T++ A +LA+L+ ALHGDI Q RE + ++G+ LVAT
Sbjct: 246 NMDA-CLVFVRTRKDAEELAELMSREGHACEALHGDIPQKLREKVVDRLKNGRLNVLVAT 304
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIER 475
+V ARGLD+ + +I + P D E+Y+HR GRTGRAG G A++ R K S+ +ER
Sbjct: 305 DVVARGLDVERISHVINYDMPHDNESYVHRIGRTGRAGREGDAILFVTGREKRSLYNLER 364
Query: 476 ESGVKFEHISAPQPADIAK 494
+ E +S P DI K
Sbjct: 365 HTRQPIEEMSMPSADDINK 383
>gi|397779795|ref|YP_006544268.1| ATP-dependent RNA helicase DeaD [Methanoculleus bourgensis MS2]
gi|396938297|emb|CCJ35552.1| ATP-dependent RNA helicase DeaD [Methanoculleus bourgensis MS2]
Length = 521
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 153/402 (38%), Positives = 222/402 (55%), Gaps = 22/402 (5%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F IS + ++ G E PIQ T ++L+G D+ G+A+TG GKT AF +P +E +
Sbjct: 10 FNISQKTLQAIQDMGFEEPTPIQVSTIPVILEGRDVTGQAQTGTGKTAAFGVPAIEQVDV 69
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEF 232
G R VLVL PTRELA Q E+F + GL +YGG P Q
Sbjct: 70 G----------NRETQVLVLSPTRELAIQTAEEFARLAKHHRGLNILPIYGGQPIERQFR 119
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G VV+GTPGR+ DH++RG + +++K VLDEAD+ML MGF ED+E IL E
Sbjct: 120 GLRRGAQVVVGTPGRVLDHLDRGTLSFAAVKMVVLDEADQMLDMGFREDIEKILD--ETP 177
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
QT+LFSATLP + IS +F K + + I + E + + L S + ++
Sbjct: 178 GDRQTILFSATLPGPILEISKRFQK-NPEVISVARREV--TVPQIEQLYLEVRSRNKLEI 234
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSG 408
+ ++ Y +++F+ TK L L A LHGD++QSQR+ +A FR+G
Sbjct: 235 LCRLLDMYDPE-LSLVFSNTKRGVDDLTAHLQARGYFAEGLHGDMKQSQRDRVMAKFRAG 293
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK- 467
LVAT+VAARG+D+ DV L+I E P+D+E YIHR GRT RAG TG A+ PR+
Sbjct: 294 TIDILVATDVAARGIDVEDVDLVINYEVPQDIEYYIHRIGRTARAGRTGRAITFVGPREY 353
Query: 468 SSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSD 509
+ I+ + ++ I P P D+ ++ + + + QV D
Sbjct: 354 YKLRTIQDYTKIRIGRIPLPTPGDVEESRTRKLVDRVQQVID 395
>gi|409392122|ref|ZP_11243740.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia rubripertincta
NBRC 101908]
gi|403197987|dbj|GAB86974.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia rubripertincta
NBRC 101908]
Length = 595
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 148/393 (37%), Positives = 219/393 (55%), Gaps = 22/393 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+R + G E+ PIQA T ++ G D+VG A+TG GKT AF +PIL L
Sbjct: 34 VRAAITDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAIPILSRLDTS----- 88
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGI 238
R P L+L PTRELA QV E F Y + + +YGG Y Q L++G
Sbjct: 89 -----ARTPQALILAPTRELALQVSEAFGRYSAHMPEVKVLPIYGGQSYGVQLAGLRRGA 143
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
V++GTPGR+ DH+++ +D+S L+F VLDEADEML MGF EDVE IL + D +V
Sbjct: 144 QVIVGTPGRVIDHLDKKTLDISGLEFLVLDEADEMLTMGFAEDVERILAETPDTKQVA-- 201
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+PS ++ ++ ++LKS + ++ K + N+ L S + + +
Sbjct: 202 LFSATMPSSIRRLAQRYLKSPQ---EITVKSKTATAQNITQRYLQVSHQRKLDALTRFLE 258
Query: 359 CYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLV 414
I+F TK++ +LA+ L A A++GD+ Q+QRE T+ +SG LV
Sbjct: 259 VEEFDA-MIVFVRTKQATEELAEKLRSRGLSAVAINGDLAQAQRERTINQLKSGSIDILV 317
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-I 473
AT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + + I
Sbjct: 318 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALLFVSPRERHLLRAI 377
Query: 474 ERESGVKFEHISAPQPADIAKAAGVEAAETITQ 506
ER + + I P D+ + E+ITQ
Sbjct: 378 ERATRQELTEIGLPSVDDVNAQRVAKFGESITQ 410
>gi|359778425|ref|ZP_09281694.1| putative ATP-dependent RNA helicase [Arthrobacter globiformis NBRC
12137]
gi|359304342|dbj|GAB15523.1| putative ATP-dependent RNA helicase [Arthrobacter globiformis NBRC
12137]
Length = 559
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 145/390 (37%), Positives = 219/390 (56%), Gaps = 11/390 (2%)
Query: 91 VEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLV 150
+EPE + E+ + + F + + E L GI FPIQAMT + L G D++
Sbjct: 19 IEPEETIISDEKPHEIAEKSFADFDVRADIVESLADAGITHPFPIQAMTLPVALSGHDII 78
Query: 151 GRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210
G+A+TG GKTL F +P+L+ + K AP +V++PTRELA QV D
Sbjct: 79 GQAKTGTGKTLGFGIPVLQRVVGRDDAGFDKLPSPGAPQAMVIVPTRELAVQVANDLQTA 138
Query: 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270
+ +YGG Y Q L+KG++VV+GTPGR+ D ++ ++ L ++K VLDEA
Sbjct: 139 SRKRNVRIATIYGGRAYEPQIDALQKGVEVVVGTPGRLIDLYKQKHLVLKNVKIVVLDEA 198
Query: 271 DEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK 330
DEML +GF+ DVE ++ QTLLFSAT+P V ++ +++ +++
Sbjct: 199 DEMLDLGFLPDVETLIAGTPAVR--QTLLFSATMPGPVIAMARRYMTQPTHIRAADPDDE 256
Query: 331 MKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GA 386
++R ++ S +++V+ I++ GRTIIFT+TK +A+++A+ L A
Sbjct: 257 GLTKRDIRQLIYRAHSMDKTEVVSRILQARGR-GRTIIFTKTKRTAAKVAEELVDRGFAA 315
Query: 387 RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHR 446
A+HGD+ Q RE L FR+ K LVAT+VAARG+D++DV +I + D + Y+HR
Sbjct: 316 AAIHGDLGQGAREQALRAFRNNKVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHR 375
Query: 447 SGRTGRAGNTGVAVMLYD----PRKSSVSK 472
GRTGRAGN G AV D PR ++K
Sbjct: 376 VGRTGRAGNKGTAVTFVDWDDMPRWGLINK 405
>gi|167628080|ref|YP_001678580.1| DEAD/DEAH box helicase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|254877152|ref|ZP_05249862.1| ATP-dependent RNA helicase deaD [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|167598081|gb|ABZ88079.1| DEAD-box subfamily ATP-dependent helicase [Francisella philomiragia
subsp. philomiragia ATCC 25017]
gi|254843173|gb|EET21587.1| ATP-dependent RNA helicase deaD [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 581
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 148/375 (39%), Positives = 215/375 (57%), Gaps = 22/375 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQ +L G D++G+A+TG GKT AF LP++ ++ RA
Sbjct: 26 GYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNM--------DLESRDRA 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F + + L C+YGG Y +Q LK+G+ VV+GT G
Sbjct: 78 PQVLVLAPTRELAIQVAEQFQAFAKNIPNLDVACIYGGQEYGSQIRALKQGVKVVVGTTG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHIE+G + L +L+ VLDEADEMLRMGF++DV +L V D + Q LLFSAT+P+
Sbjct: 138 RVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRYVLSHVSD--ECQRLLFSATIPT 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ I ++L++ K + K K + V + + + ++ + G
Sbjct: 196 DIADIIQEYLRNPCK---IQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLEVEETDG-V 251
Query: 367 IIFTETKESASQLADLLP--GAR--ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF +TK S ++AD L G R A++GD+QQSQRE + FRS K LVAT+V ARG
Sbjct: 252 IIFVKTKTSTIEVADNLKALGYRVAAINGDMQQSQREYIVDQFRSAKSDVLVATDVVARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS--VSKIERESGVK 480
+D+ + +I + P D + Y+HR GRTGRAG G+++ L P K + +ER +G
Sbjct: 312 IDLERISHVINYDMPNDSDTYVHRIGRTGRAGREGISISLV-PLKEMRFLRTLERFTGSP 370
Query: 481 FEHISAPQPADIAKA 495
+ + P D+A++
Sbjct: 371 MQEVFMPSAKDLAQS 385
>gi|427702212|ref|YP_007045434.1| DNA/RNA helicase [Cyanobium gracile PCC 6307]
gi|427345380|gb|AFY28093.1| DNA/RNA helicase, superfamily II [Cyanobium gracile PCC 6307]
Length = 640
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 151/390 (38%), Positives = 221/390 (56%), Gaps = 22/390 (5%)
Query: 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
+A + F + L + L + G E PIQ ++ G DLVG+A+TG GKT AF LP+L
Sbjct: 78 SAFAAFGLRQELLDGLAAIGFEEPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFGLPLL 137
Query: 169 ESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPY 227
E L G R P VLVL PTRELA QV E F+ Y + G+ +YGGA +
Sbjct: 138 ERLDPGQ----------RTPQVLVLTPTRELAMQVAEAFNSYAARMKGVKVLPVYGGADF 187
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q +L++G+ +V+GTPGR+ DH+ +G +DLS L+ VLDEADEMLRMGF++DV+ +L
Sbjct: 188 RDQIQQLRRGVQIVVGTPGRVMDHMRQGTLDLSGLRSLVLDEADEMLRMGFIDDVKWVLE 247
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
++ + Q +LFSAT+P ++ IS L++ ++ +K +R L +
Sbjct: 248 QL--PAERQVVLFSATMPPEIRRISQNHLRNPA---EITIRQKAADGRRIRQRHLVVNGP 302
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLA 403
+ + + ++ S G IIF TK +A+ L L+GD+ Q+QRE T+
Sbjct: 303 QKLEALERVLEAEGSEG-VIIFARTKAITLTVAESLEQHGYDVAVLNGDVPQTQRERTIE 361
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
R G+ LVAT+VAARGLD++ + L+I + P D EAY+HR GRTGRAG +G A++
Sbjct: 362 RLRDGRVNVLVATDVAARGLDVDRIGLVINYDIPFDGEAYVHRIGRTGRAGRSGEAILFL 421
Query: 464 DPR-KSSVSKIERESGVKFEHISAPQPADI 492
PR + + +ER E + P A I
Sbjct: 422 TPRERRFLGGLERAVNQPIEPMEVPGNASI 451
>gi|343924703|ref|ZP_08764245.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia alkanivorans
NBRC 16433]
gi|343765383|dbj|GAA11171.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia alkanivorans
NBRC 16433]
Length = 595
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 147/393 (37%), Positives = 219/393 (55%), Gaps = 22/393 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+R + G E+ PIQA T ++ G D+VG A+TG GKT AF +PIL L
Sbjct: 34 VRAAITDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAIPILSRLDTS----- 88
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGI 238
R P L+L PTRELA QV E F Y + + +YGG Y Q L++G
Sbjct: 89 -----ARTPQALILAPTRELALQVSEAFGRYSAHMPEVKVLPIYGGQSYGVQLAGLRRGA 143
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
V++GTPGR+ DH+++ +D+S L+F VLDEADEML MGF EDVE IL + D +V
Sbjct: 144 QVIVGTPGRVIDHLDKKTLDISGLEFLVLDEADEMLTMGFAEDVERILAETPDTKQVA-- 201
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+PS ++ ++ ++LKS + ++ K + N+ L S + + +
Sbjct: 202 LFSATMPSSIRRLAQRYLKSPQ---EITVKSKTATAQNITQRYLQVSHQRKLDALTRFLE 258
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
I+F TK++ +LA+ L A A++GD+ Q+QRE T+ ++G LV
Sbjct: 259 VEEFDA-MIVFVRTKQATEELAEKLRSRGLSAVAINGDLAQAQRERTINQLKNGSIDILV 317
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-I 473
AT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + + I
Sbjct: 318 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALLFVSPRERHLLRAI 377
Query: 474 ERESGVKFEHISAPQPADIAKAAGVEAAETITQ 506
ER + + I P D+ + E+ITQ
Sbjct: 378 ERATRQELTEIGLPSVDDVNAQRVAKFGESITQ 410
>gi|258652378|ref|YP_003201534.1| DEAD/DEAH box helicase [Nakamurella multipartita DSM 44233]
gi|258555603|gb|ACV78545.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM
44233]
Length = 586
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 143/348 (41%), Positives = 203/348 (58%), Gaps = 11/348 (3%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQA+T + L GSDL+G+ARTG GKTL F +P+L+ L++ + G
Sbjct: 60 LADVGIERTFAIQALTLPIALTGSDLIGQARTGMGKTLGFGVPLLQRLSHDKAVTVDEKG 119
Query: 184 ---YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDV 240
GRAP +V++PTREL QV D G A+GL +YGG Y Q L+ G+D+
Sbjct: 120 KLPVGRAPRAVVMVPTRELCVQVTRDLHALGKALGLAVTAVYGGRAYEPQIKALQAGVDL 179
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGR+ D G++ L +K VLDEADEML +GF+ D+E +L V QT+LF
Sbjct: 180 VVGTPGRLLDLANSGHLVLGGVKVLVLDEADEMLDLGFLPDMEKVLDLVPTVK--QTMLF 237
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P + ++ F+ E ST R V + + +++ +++
Sbjct: 238 SATMPGPILTLARTFMSRPMHIRAEAAAEGAMHSTT-RQFVYRAHALDKVEMLARVLQAR 296
Query: 361 SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
G T++FT TK +A+++A+ L A A+HGD+ Q RE L FR+GK LVAT
Sbjct: 297 GR-GLTMVFTRTKRTAAKVAEDLEERGFAAAAVHGDLGQGAREQALRAFRAGKVDVLVAT 355
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
+VAARG+D++DV +I + P + + Y+HR GRTGRAG TG AV D
Sbjct: 356 DVAARGIDVDDVTHVINFQCPEEEKTYVHRIGRTGRAGKTGTAVSFID 403
>gi|429765111|ref|ZP_19297415.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
celatum DSM 1785]
gi|429186973|gb|EKY27897.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
celatum DSM 1785]
Length = 542
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 143/336 (42%), Positives = 198/336 (58%), Gaps = 21/336 (6%)
Query: 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194
IQA + L G+DL+G+A+TG GKT AF LP++ +LT A ++L
Sbjct: 37 IQAEAIPVALAGNDLIGQAQTGTGKTAAFGLPMINNLT-----------VKNAIGSIILA 85
Query: 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
PTRELA QVH++ L +YGGAP H Q LKK ++V+GTPGR+ DHI R
Sbjct: 86 PTRELAIQVHDELVKLTKYEKLNIVAVYGGAPIHLQARDLKKA-NIVVGTPGRVLDHIRR 144
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTK 314
GN+ LSS++F VLDEADEML MGF++D+E I+ + + QTLLFSAT+P +K +S K
Sbjct: 145 GNLPLSSVEFLVLDEADEMLNMGFIDDMEEIMKSIPEER--QTLLFSATMPPQIKKLSKK 202
Query: 315 FLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKE 374
+LK D K + + E M ST ++ +S R + + +I + + IIF TK+
Sbjct: 203 YLKDDAKHVAIAKKE-MTGST-IKQNFFEVHNSQRLEALCRLID-FDNPTAGIIFCRTKK 259
Query: 375 SASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQL 430
L + +HGD+ Q QR TLA F++G LVAT+VAARG+D++ V
Sbjct: 260 GVDDLVAAMQARGYMVEGMHGDMSQVQRMKTLAKFKNGSLKFLVATDVAARGIDVDGVTH 319
Query: 431 IIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
+ E P+DVE+Y+HR GRTGRAG G A + PR
Sbjct: 320 VFNYELPQDVESYVHRIGRTGRAGREGTAYSIITPR 355
>gi|403217071|emb|CCK71566.1| hypothetical protein KNAG_0H01520 [Kazachstania naganishii CBS
8797]
Length = 621
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 157/388 (40%), Positives = 215/388 (55%), Gaps = 28/388 (7%)
Query: 105 SEHPNAVSRFRISVPLREKL----KSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKT 160
+E P+ + F S PL + L + G P+Q + +V G DL+G A+TG GKT
Sbjct: 129 TEVPDPIEEF-TSPPLEQLLFDNVQRAGFSKPTPVQKYSIPIVTAGRDLMGCAQTGSGKT 187
Query: 161 LAFVLPIL-ESLTNGPTK----ASKKTGYGR--APSVLVLLPTRELAKQVHEDFDVYGGA 213
F+ PIL E T GP AS Y R P+ LVL PTRELA Q+ E+ +
Sbjct: 188 GGFLFPILSEMFTAGPAPKPQAASGGYSYQRKVYPTALVLAPTRELATQIFEEARKFTYR 247
Query: 214 VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273
+ C +YGGAP AQ +L++G D+++ TPGR+ D +ERG I L+++K+ LDEAD M
Sbjct: 248 SWVRPCVVYGGAPVGAQMGELERGCDLLVATPGRLNDLLERGKISLANIKYLTLDEADRM 307
Query: 274 LRMGFVEDVELILGKVEDA-----NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
L MGF + I VED N+ QTL+FSAT P ++H++ FL I L
Sbjct: 308 LDMGFEPQIRHI---VEDCDMPPVNERQTLMFSATFPRDIQHLARDFLND---YIFLSVG 361
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLL----P 384
S N+ VL + + D++ + GG T+IF ETK A QL D L
Sbjct: 362 RVGSTSENITQKVLYVDDMDKKSALLDLLSS-TKGGLTLIFVETKRMADQLTDFLIMQNI 420
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444
A A+HGD Q +RE L F+SG LVAT VAARGLDI +V L+I + P D++ Y+
Sbjct: 421 RATAIHGDRTQMERERALGAFKSGTADVLVATAVAARGLDIPNVTLVINYDLPGDIDDYV 480
Query: 445 HRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
HR GRTGRAGNTG A+ ++ +++ K
Sbjct: 481 HRIGRTGRAGNTGTAISFFNYNNNNIVK 508
>gi|390566282|ref|ZP_10246715.1| DEAD-box ATP-dependent RNA helicase cshA [Nitrolancetus hollandicus
Lb]
gi|390170465|emb|CCF86060.1| DEAD-box ATP-dependent RNA helicase cshA [Nitrolancetus hollandicus
Lb]
Length = 528
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 149/390 (38%), Positives = 212/390 (54%), Gaps = 35/390 (8%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ +++ G E PIQ ++LDG D++ +A+TG GKT AF LPI++ L
Sbjct: 9 LSEPILRAIEAVGFEEPTPIQRQAIPLMLDGRDVIAQAQTGTGKTAAFALPIIQRL---- 64
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
K +K P LVL PTRELA QV + F G + +YGG P Q L+
Sbjct: 65 -KPDQK-----GPQALVLAPTRELAVQVAQAFYSLGKFQDIRVLAVYGGQPIERQLRALR 118
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
+D+++GTPGRI DH+ R + + VLDEADEML MGFVED+E IL +V +
Sbjct: 119 FPVDIIVGTPGRIMDHLRRETLSFEDISMVVLDEADEMLDMGFVEDIEWILDQV--PAQR 176
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
Q LFSAT+P+ + +S ++L+ + ++ + + +P + QV+P
Sbjct: 177 QIALFSATIPNRIVDLSRRYLQ-----------KPVRIAIEPERVTVPLTEQVYYQVVPR 225
Query: 356 I-------IRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAG 404
I ++ IIF TK L L A ALHGD+ Q QR+ +
Sbjct: 226 AKVEALTRILDLTAPSSAIIFCRTKREVDDLTQKLESLGYPAEALHGDLSQVQRDRVMGR 285
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
FRSG+ L+AT+VA+RGLDI V +I + P D E+Y+HR GRTGRAG GVA+ L
Sbjct: 286 FRSGQTELLIATDVASRGLDIEQVSHVINYDIPLDPESYVHRIGRTGRAGRPGVAITLVT 345
Query: 465 PRKSSVSK-IERESGVKFEHISAPQPADIA 493
PR+S + + IER +G + E S P +IA
Sbjct: 346 PRESRLLRAIERATGGRIERRSVPTAEEIA 375
>gi|337755500|ref|YP_004648011.1| Cold-shock DEAD-box protein A [Francisella sp. TX077308]
gi|336447105|gb|AEI36411.1| Cold-shock DEAD-box protein A [Francisella sp. TX077308]
Length = 572
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 146/375 (38%), Positives = 213/375 (56%), Gaps = 22/375 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQ +L G D++G+A+TG GKT AF LP++ ++ RA
Sbjct: 26 GYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNM--------DMESRDRA 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F+ + + L C+YGG Y +Q LK+G+ VV+GT G
Sbjct: 78 PQVLVLAPTRELAIQVAEQFEAFAKNIPNLDVTCIYGGQEYGSQIRALKQGVKVVVGTTG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHIE+G + L +L+ VLDEADEMLRMGF++DV +L V D + Q LLFSAT+P+
Sbjct: 138 RVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRYVLSHVSD--ECQRLLFSATIPT 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ I ++L++ K + K K + V + + + ++ + G
Sbjct: 196 DIADIIQEYLRNPCK---IQVKAKTKTANTVTQKFMVIKGFRKIDALDRLLEVEETDG-V 251
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF +TK S ++AD L A++GD+QQSQRE + FRS K LVAT+V ARG
Sbjct: 252 IIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS--VSKIERESGVK 480
+D+ + +I + P D + Y+HR GRTGRAG G ++ L P K + +ER +G
Sbjct: 312 IDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLV-PLKEMRFLRTLERFTGSP 370
Query: 481 FEHISAPQPADIAKA 495
+ + P D+A++
Sbjct: 371 MQEVFMPSAKDLAQS 385
>gi|386287044|ref|ZP_10064223.1| Cold-shock DEAD box protein A-like protein [gamma proteobacterium
BDW918]
gi|385279960|gb|EIF43893.1| Cold-shock DEAD box protein A-like protein [gamma proteobacterium
BDW918]
Length = 644
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 148/375 (39%), Positives = 211/375 (56%), Gaps = 22/375 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
+K+ G E PIQA T ++L G D+VG+A+TG GKT AF LP+L L S++T
Sbjct: 61 VKAVGYEIPSPIQAATIPLILAGRDVVGQAQTGTGKTAAFALPLLSRLDVN----SRRT- 115
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
L+L PTRELA QV E Y + G +YGG Y Q LK+G+ VV+
Sbjct: 116 -----QALILAPTRELAIQVAEALQSYASQLPGFNVLPIYGGQDYRGQLAALKRGVQVVV 170
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+ RG + L L VLDEADEMLRMGF++DVE ++ ++ K Q LFSA
Sbjct: 171 GTPGRVMDHMRRGTLKLDDLTHLVLDEADEMLRMGFIDDVEWVMSQMP--AKRQIALFSA 228
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+PS ++ I+T +L + ++ + K + +R + + I+
Sbjct: 229 TMPSAIRRIATTYLTNPEQ---VTIQTKTSTAITIRQRYWMARGLNKLDALTRILEAEPF 285
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G IIF TK ++LA+ L A AL+GDI Q+QRE T+ ++G+ ++AT+V
Sbjct: 286 DG-MIIFVRTKLVTTELAEKLQARGYAAAALNGDIAQAQRERTVEQLKNGRLDIVIATDV 344
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERES 477
AARGLD+ + +I + P D EAY+HR GRTGRAG +G A++ PR K + IER +
Sbjct: 345 AARGLDVERISHVINYDIPHDTEAYVHRIGRTGRAGRSGDAILFVAPREKRMLQAIERAT 404
Query: 478 GVKFEHISAPQPADI 492
E + P +I
Sbjct: 405 RQSIEEMGLPSAENI 419
>gi|78189083|ref|YP_379421.1| DEAD/DEAH box helicase-like protein [Chlorobium chlorochromatii
CaD3]
gi|78171282|gb|ABB28378.1| ATP-dependent RNA helicase CsdA [Chlorobium chlorochromatii CaD3]
Length = 640
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 153/392 (39%), Positives = 220/392 (56%), Gaps = 24/392 (6%)
Query: 104 ESEHPNAVSRFRISVP--LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTL 161
E + P + F + +P L + L+ G ES PIQA T +L G D++G+A+TG GKT
Sbjct: 3 EQQLPLENNFFSLQLPELLMKALEEVGYESPTPIQAQTIPFLLAGRDVLGQAQTGTGKTA 62
Query: 162 AFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCC 220
AF LPIL S+ + P LVL PTRELA QV E F Y + G
Sbjct: 63 AFALPILASIDIQQAE----------PQALVLAPTRELAIQVAEAFQRYAEYLKGFHVVP 112
Query: 221 LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVE 280
+YGG Y Q L++G+ VV+GTPGR+ DHI RG+++L+ LK VLDEADEMLRMGF++
Sbjct: 113 IYGGQDYGIQFRMLRRGVQVVVGTPGRVMDHIRRGSLNLTHLKTLVLDEADEMLRMGFID 172
Query: 281 DVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340
DVE IL + +V LFSAT+P ++ I+ K+L + ++ K +R
Sbjct: 173 DVEWILEQTPAGRQVA--LFSATMPPPIRRIAQKYL---DQPAEVTIQTKTTTVDTIRQR 227
Query: 341 VLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQS 396
S + ++ I+ G IIF+ TK +LA+ L A AL+GD+ Q+
Sbjct: 228 YWVVGGSHKLDILTRILEVEPFDG-MIIFSRTKTMTIELAEKLQARGYAAAALNGDMPQN 286
Query: 397 QREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNT 456
QRE T+ ++G +VAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 287 QRERTIEQLKNGNINIVVATDVAARGLDVERISHVVNYDIPSDTESYVHRIGRTGRAGRA 346
Query: 457 GVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487
G A++ PR K+ + IE+ + + E + P
Sbjct: 347 GDAILFVAPREKNMLYAIEKATRSRIEQMVLP 378
>gi|384228359|ref|YP_005620094.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Ua
(Uroleucon ambrosiae)]
gi|345539292|gb|AEO08159.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Ua
(Uroleucon ambrosiae)]
Length = 602
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 142/341 (41%), Positives = 204/341 (59%), Gaps = 26/341 (7%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQA ++L+G D++G A+TG GKT AF LP+L +L T AP +LVL
Sbjct: 31 PIQAACIPLLLNGHDVLGMAQTGSGKTAAFALPLLHNLNINLT----------APQILVL 80
Query: 194 LPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI 252
PTRELA QV E F D +G+ LYGG Y Q L++G +V+GTPGR+ DH+
Sbjct: 81 APTRELAVQVAEAFSDFSKYMIGINVLPLYGGQRYDLQLRALRQGPQIVVGTPGRLLDHL 140
Query: 253 ERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 312
+RG ++LS+L VLDEADEMLRMGF+EDVE I+ K+ K QT LFSAT+P ++ IS
Sbjct: 141 KRGTLNLSNLHGLVLDEADEMLRMGFIEDVETIMTKI--PKKHQTALFSATMPEAIRRIS 198
Query: 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY--SSGGRTIIFT 370
+F+ S K+ K++++ R + + +IR TIIF
Sbjct: 199 KRFMNSPKEI-------KIQSNITTRPDIKQSYWMVYGRKTDALIRFLEVEDFSATIIFV 251
Query: 371 ETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426
+TK + ++A+ L + AL+GD+ Q+ RE TL ++G+ L+AT+VAARGLD++
Sbjct: 252 KTKNATLEVAEALEKNGYNSAALNGDMNQALREQTLERLKNGRLDILIATDVAARGLDVD 311
Query: 427 DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK 467
+ +I + P D E+Y+HR GRTGRAG TG A++ + R+
Sbjct: 312 RISFVINYDIPMDSESYVHRIGRTGRAGRTGRALLFVENRE 352
>gi|119502760|ref|ZP_01624845.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2080]
gi|119461106|gb|EAW42196.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2080]
Length = 582
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 159/385 (41%), Positives = 223/385 (57%), Gaps = 25/385 (6%)
Query: 112 SRFR-ISVP--LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
SRF + +P L+E L+S G E+ PIQA T ++L+G D+VG A+TG GKT AF LPIL
Sbjct: 9 SRFNSLGLPDFLQENLQSLGYETATPIQAGTIPLLLEGRDVVGLAQTGTGKTAAFALPIL 68
Query: 169 ESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPY 227
++ K R+P LVL PTRELA+QV E F YG G GL ++GGA
Sbjct: 69 ANID---VKV-------RSPQALVLCPTRELAQQVAEAFRSYGRGMGGLRILSIFGGADM 118
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q L++G +V+ TPGR+ DHIER +IDL+ + VLDEADEMLRMGF++DV+ IL
Sbjct: 119 RQQLKSLREGTHIVVATPGRLLDHIERRSIDLTGINAVVLDEADEMLRMGFIDDVDTILA 178
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
K KV LFSAT+P V+ I+ K L S+ I + + N+ +
Sbjct: 179 KTPKERKVA--LFSATMPKRVRDIANKHL-SNPAEISVAA--AATTNENIEQCYWLAKGA 233
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLL--PGARA--LHGDIQQSQREVTLA 403
++ + + ++ + G I+FT T+ES + +A+ L G +A L+GD+ Q R T++
Sbjct: 234 SKLEALKRLLAFEDTEG-VIVFTRTRESTTVIAEQLRQTGLKASPLNGDMDQKMRLRTVS 292
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
+SG LVAT+VAARGLD+ + +I + P D EAY+HR GRTGRAG G A++
Sbjct: 293 DLKSGALDVLVATDVAARGLDVERITHVINYDVPFDEEAYVHRIGRTGRAGRKGKAILFV 352
Query: 464 DPR-KSSVSKIERESGVKFEHISAP 487
PR + + IER + I P
Sbjct: 353 VPRERRMLRNIERLTRQSIPEIKLP 377
>gi|421076010|ref|ZP_15537012.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans JBW45]
gi|392525869|gb|EIW48993.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans JBW45]
Length = 526
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 155/390 (39%), Positives = 217/390 (55%), Gaps = 37/390 (9%)
Query: 117 SVPLREKLKSK----GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT 172
++PL +KL S G E PIQ T +VL+G D++G+A+TG GKT AF +P +E +
Sbjct: 9 TIPLSKKLLSAIAEMGFEEPSPIQNQTIPLVLEGHDVIGQAQTGTGKTAAFGIPAIEKIA 68
Query: 173 NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF 232
+ R VLVL PTRELA QV E+ G + + +YGG P Q
Sbjct: 69 D-----------SRQIQVLVLTPTRELAIQVSEELAKIGKFKRIKTLPIYGGQPIDRQIK 117
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L+ G+ VVIGTPGR+ DHI R I L ++K +LDEADEML MGFVED+E I+ +V
Sbjct: 118 ALRMGVHVVIGTPGRLLDHIRRKTIKLDAVKTLILDEADEMLDMGFVEDIETIMQEVPVE 177
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QTLLFSAT+P + ++ K++ ++ KTI S N + +P +
Sbjct: 178 GR-QTLLFSATMPGPIATLARKYM-NNPKTI----------SINREQLTVPLIDQIYYET 225
Query: 353 ---IPDIIRCYS--SGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLA 403
+ + R + G++IIF TK L L G A LHGD+ Q+QR+ +
Sbjct: 226 REKLEALCRVLDVETTGKSIIFCRTKRGVDDLVVSLQGRGYMADGLHGDLSQAQRDRVMK 285
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
FR GK L+AT+VAARG+DI+D+ + + P+D EAY+HR GRTGRAG GVA+
Sbjct: 286 KFRDGKLELLIATDVAARGIDIDDITHVFNYDIPQDNEAYVHRIGRTGRAGKKGVAITFI 345
Query: 464 DPRKSSVSK-IERESGVKFEHISAPQPADI 492
+PR+ K IE+ + + P ADI
Sbjct: 346 NPREYRQLKLIEKLTKSRIVRKQLPSAADI 375
>gi|407275347|ref|ZP_11103817.1| cold-shock DEAD-box protein, partial [Rhodococcus sp. P14]
Length = 587
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 154/402 (38%), Positives = 222/402 (55%), Gaps = 29/402 (7%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ L G E+ PIQA T +L+G D+VG A+TG GKT AF +PIL + A K+
Sbjct: 24 QALSDVGYENPSPIQAATIPPLLEGRDVVGLAQTGTGKTAAFAVPILSRIDT----AVKR 79
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDV 240
P L+L PTRELA QV E F Y + GL +YGG Y Q L++G V
Sbjct: 80 ------PQALILAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSGLRRGAQV 133
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
++GTPGR+ DH+ +G +D+S L+F VLDEADEML MGF EDVE IL ++ +V LF
Sbjct: 134 IVGTPGRVIDHLAKGTLDISELEFLVLDEADEMLTMGFQEDVERILADTPESKQVA--LF 191
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P ++ +S ++L +++ K S N+ + S + + I+
Sbjct: 192 SATMPGAIRRLSKQYLHD---PVEITVKSKTTTSANISQRWVLVSHQRKLDALTRILEVE 248
Query: 361 SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
IIF TK++ LA+ L A A++GDI Q+QRE T+ +SG LVAT
Sbjct: 249 QFEA-MIIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQLKSGALDILVAT 307
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IER 475
+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + K IER
Sbjct: 308 DVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGDALLFVAPRERHLLKAIER 367
Query: 476 ESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKS 517
+ I P D+ A+ + + +DS+ A S
Sbjct: 368 ATRQPLTEIQLPSVEDV-------NAQRVEKFNDSITEALTS 402
>gi|220913250|ref|YP_002488559.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6]
gi|219860128|gb|ACL40470.1| DEAD/DEAH box helicase domain protein [Arthrobacter
chlorophenolicus A6]
Length = 561
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 144/390 (36%), Positives = 216/390 (55%), Gaps = 11/390 (2%)
Query: 91 VEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLV 150
+EPE + E+ + + + + + + L GI FPIQAMT + L G D++
Sbjct: 19 IEPEETIISDEKPHEIAEKSFADYNVRQDIVDSLSDAGITHPFPIQAMTLPVALSGHDII 78
Query: 151 GRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210
G+A+TG GKTL F +P L+ + K AP LV++PTRELA QV D
Sbjct: 79 GQAKTGTGKTLGFGIPALQRVVGRDDAGYDKLAVPGAPQALVIVPTRELAVQVASDLQAA 138
Query: 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270
+YGG Y Q LK G++VV+GTPGR+ D + ++ L +++ VLDEA
Sbjct: 139 STKRNARIATIYGGRAYEPQVEALKNGVEVVVGTPGRLIDLYRQKHLSLKNVRIVVLDEA 198
Query: 271 DEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK 330
DEML +GF+ DVE I+ QTLLFSAT+P V ++ +++ +++
Sbjct: 199 DEMLDLGFLPDVETIIAGTPAVR--QTLLFSATMPGPVIAMARRYMTQPTHIRAADPDDE 256
Query: 331 MKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GA 386
++R ++ S +++V+ I++ GRTIIFT+TK +A+++A+ L A
Sbjct: 257 GLTKRDIRQLIYRAHSMDKTEVVARILQARGR-GRTIIFTKTKRTAAKVAEELVDRGFAA 315
Query: 387 RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHR 446
A+HGD+ Q RE L FR+ K LVAT+VAARG+D++DV +I + D + Y+HR
Sbjct: 316 AAIHGDLGQGAREQALRAFRNNKVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHR 375
Query: 447 SGRTGRAGNTGVAVMLYD----PRKSSVSK 472
GRTGRAGN G AV D PR + ++K
Sbjct: 376 VGRTGRAGNKGTAVTFVDWDDVPRWALINK 405
>gi|380302038|ref|ZP_09851731.1| DNA/RNA helicase, superfamily II [Brachybacterium squillarum M-6-3]
Length = 594
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 143/355 (40%), Positives = 206/355 (58%), Gaps = 8/355 (2%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F + + E L SKGI FPIQ+MT + L G D++G+A+TG GKTL F +P+L+S T
Sbjct: 49 FDVREDIVEALSSKGIIHPFPIQSMTLPVALKGRDIIGQAKTGTGKTLGFGIPLLQS-TV 107
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
P + + P LV+LPTRELA QV ED + +YGG Y Q
Sbjct: 108 APGEDNPTGRVIGKPQALVVLPTRELAVQVAEDLQDASAKRPVRILTVYGGRAYEPQIEA 167
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L+KG+DVV+GTPGR+ D + + +DLS ++ VLDEADEML +GF+ED+E +L V +
Sbjct: 168 LEKGVDVVVGTPGRLIDLMRQKYLDLSQVRTAVLDEADEMLDLGFLEDIEKLLRAVPE-- 225
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
K QT+LFSAT+P + ++ +F+ + + +++ +V + +V+
Sbjct: 226 KRQTMLFSATMPGPILALARRFMTQPTHIRAHDPGDVSRTKADIKQVVYRAHQLDKIEVL 285
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409
+++ G TI+F TK A ++A+ L A LHGD+ Q RE L FR+GK
Sbjct: 286 ARVLQSRGR-GLTIVFMRTKRQADRVAEDLQKRGFAAAPLHGDLGQGAREQALRAFRNGK 344
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
LVAT+VAARG+D++DV +I P D + Y+HR+GRTGRAG G AV D
Sbjct: 345 VDVLVATDVAARGIDVDDVTHVINWNSPDDDKTYLHRTGRTGRAGKKGTAVTFVD 399
>gi|403528202|ref|YP_006663089.1| cold-shock DEAD box protein A [Arthrobacter sp. Rue61a]
gi|403230629|gb|AFR30051.1| cold-shock DEAD box protein A [Arthrobacter sp. Rue61a]
Length = 726
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 161/428 (37%), Positives = 230/428 (53%), Gaps = 28/428 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT-----NGPTKA 178
L+ G E PIQA T ++L+G D+VG A+TG GKT AF +P L L NGP++
Sbjct: 86 LQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRLAELHDLNGPSRK 145
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKG 237
++ LVL PTRELA QV E F Y + T +YGG+ Y Q L++G
Sbjct: 146 TQ---------ALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQLAGLRRG 196
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
VV+GTPGR+ DHI +G++DLS L++ VLDEADEMLRMGF +DVE I + + +V
Sbjct: 197 AQVVVGTPGRVIDHIAKGSLDLSELQYLVLDEADEMLRMGFADDVEQIFQQTPETRQVA- 255
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P ++ +S ++L + ++ K N + L + + I+
Sbjct: 256 -LFSATMPGQIRRMSKQYLNN---PAEISVKSKTTTGANTKQRYLQVMGPHKLDALTRIL 311
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
G I F TK + LAD L A A++GDI Q QRE T+ + G+ L
Sbjct: 312 EVEEFDG-VIAFVRTKMATEDLADKLKARGFQAAAINGDIPQQQRERTVDALKEGRIDIL 370
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSK 472
VAT+VAARGLD+ + +I + P D E+Y+HR GRTGRAG +G A++ PR K +
Sbjct: 371 VATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRS 430
Query: 473 IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSV-IPAFKSAAEELLNNSGLSAA 531
IE+ + E + P + + AE IT+ +S + AF+ + A+
Sbjct: 431 IEKATRQPVEQMHLPTAETVNTLRLGKFAERITETLESEDVAAFRDLISSYEEEHNVPAS 490
Query: 532 ELLAKALA 539
E +A ALA
Sbjct: 491 E-IAAALA 497
>gi|401623547|gb|EJS41643.1| ded1p [Saccharomyces arboricola H-6]
Length = 620
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 147/367 (40%), Positives = 212/367 (57%), Gaps = 21/367 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKA 178
L E +K P+Q + +V +G DL+ A+TG GKT F+ P+L ES NGP+
Sbjct: 161 LYENIKLARFTKPTPVQKYSIPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKNGPSPQ 220
Query: 179 SKKTG--YGR--APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ G Y R P+ +++ PTRELA Q+ ++ Y + +C +YGG+P Q ++
Sbjct: 221 PESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKYTYRSWVKACVVYGGSPIGNQLREI 280
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN- 293
++G D+++ TPGR+ D +ERG I L+++K+ VLDEAD ML MGF + I VED +
Sbjct: 281 ERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHI---VEDCDM 337
Query: 294 ----KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
K QTL+FSAT P+ ++H++ FL I L S N+ VL + +
Sbjct: 338 TPVGKRQTLMFSATFPADIQHLARDFLSD---YIFLSVGRVGSTSENITQKVLYVENQDK 394
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGF 405
+ D++ ++ G T+IF ETK A QL D L A A+HGD QS+RE LA F
Sbjct: 395 KSALLDLLSA-TTDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAF 453
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
RSG LVAT VAARGLDI +V +I + P DV+ Y+HR GRTGRAGNTG+A ++
Sbjct: 454 RSGDATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNS 513
Query: 466 RKSSVSK 472
+++ K
Sbjct: 514 ENANLVK 520
>gi|332296357|ref|YP_004438280.1| DEAD/DEAH box helicase [Thermodesulfobium narugense DSM 14796]
gi|332179460|gb|AEE15149.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense
DSM 14796]
Length = 531
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 143/347 (41%), Positives = 199/347 (57%), Gaps = 22/347 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
LK G E IQ T +V+ G D++G+A+TG GKT AF +PI+E KT
Sbjct: 20 LKEMGFEEPSEIQKQTIPIVMQGFDVIGQAQTGTGKTAAFGIPIVE-----------KTT 68
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
R P LVL PTRELA QV E+ GL +YGG Q LK G V+IG
Sbjct: 69 KDRVPQSLVLTPTRELAIQVAEEISKISKYRGLRVVPIYGGQSIERQIKALKNGAQVIIG 128
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ DHI+RG + LS + VLDEADEML MGF+ED+E I+ +++ N +QTLLFSAT
Sbjct: 129 TPGRLIDHIKRGTLFLSKISILVLDEADEMLDMGFIEDIETIMKSIKNEN-IQTLLFSAT 187
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P + ++ K++K+ K + + E++ + C + + + + I+
Sbjct: 188 MPDPIMALTKKYMKNPK--VVSISKEQLTVPLTDQ---FYCEAKDKLEALCRILET-EDM 241
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
+TIIF TK+ +L L A LHGD+ Q+QR+ + FR LVAT+VA
Sbjct: 242 DKTIIFCRTKKGVDELVASLNTRGYSAEGLHGDLTQAQRDKVMKSFRERNLEVLVATDVA 301
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
ARGLDI+DV +I + P+D E+Y+HR GRTGRAG +G+A+ PR
Sbjct: 302 ARGLDISDVSHVINFDIPQDPESYVHRIGRTGRAGKSGIAITFITPR 348
>gi|404260234|ref|ZP_10963530.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia namibiensis NBRC
108229]
gi|403401275|dbj|GAC01940.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia namibiensis NBRC
108229]
Length = 594
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 147/393 (37%), Positives = 220/393 (55%), Gaps = 22/393 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+R + G E+ PIQA T ++ G D+VG A+TG GKT AF +PIL L
Sbjct: 34 VRAAITDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAIPILSRLDTS----- 88
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGI 238
R+P L+L PTRELA QV E F Y + + +YGG Y Q L++G
Sbjct: 89 -----ARSPQALILAPTRELALQVSEAFGRYSAHMPEVKVLPIYGGQSYGVQLAGLRRGA 143
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
V++GTPGR+ DH+++ +D+S L+F VLDEADEML MGF EDVE IL + D +V
Sbjct: 144 QVIVGTPGRVIDHLDKKTLDISGLEFLVLDEADEMLTMGFAEDVERILAETPDTKQVA-- 201
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+PS ++ ++ ++LKS + ++ K + N+ L S + + +
Sbjct: 202 LFSATMPSSIRRLAQRYLKSPQ---EITVKSKTATAQNITQRYLQVSHQRKLDALTRFLE 258
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
I+F TK++ +LA+ L A A++GD+ Q+QRE T+ ++G LV
Sbjct: 259 VEEFDA-MIVFVRTKQATEELAEKLRSRGLSAVAINGDLAQAQRERTINQLKNGSIDILV 317
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-I 473
AT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + + I
Sbjct: 318 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALLFVSPRERHLLRAI 377
Query: 474 ERESGVKFEHISAPQPADIAKAAGVEAAETITQ 506
ER + + I P D+ + E+ITQ
Sbjct: 378 ERATRQELTEIGLPSVDDVNAQRVAKFGESITQ 410
>gi|376290134|ref|YP_005162381.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae C7 (beta)]
gi|372103530|gb|AEX67127.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae C7 (beta)]
Length = 682
Score = 248 bits (633), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 147/397 (37%), Positives = 227/397 (57%), Gaps = 23/397 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +++ G D++G A+TG GKT AF LPIL + KK R
Sbjct: 86 GFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTAAFALPILSRID------VKK----RH 135
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P L+L PTRELA QV + F + +G + +YGG Y Q L++G +++GTPG
Sbjct: 136 PQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRRGAQIIVGTPG 195
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+E+G++D+S+L+F VLDEADEML MGF EDVE IL + +V LFSAT+P+
Sbjct: 196 RVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVA--LFSATMPN 253
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ +S ++K D I + + + +TN+ L + + + I+
Sbjct: 254 GIRRLSRDYMK-DPHEIQV--KSQTRTNTNITQRYLNVAHRNKLDALTRILEVTEFEA-M 309
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK ++A+ L A A++GDI Q+QRE T+ + G+ LVAT+VAARG
Sbjct: 310 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 369
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKF 481
LD+ + + + P D E+Y+HR GRTGRAG +G A++ PR + + IER + K
Sbjct: 370 LDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNAKL 429
Query: 482 EHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKS 517
+ P ++ ++ + A++IT+ + D + F+S
Sbjct: 430 IEMDLPTVDEVNESRKAKFADSITESLEDDQVAIFRS 466
>gi|119963381|ref|YP_948725.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
gi|119950240|gb|ABM09151.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
Length = 726
Score = 248 bits (633), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 161/428 (37%), Positives = 230/428 (53%), Gaps = 28/428 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT-----NGPTKA 178
L+ G E PIQA T ++L+G D+VG A+TG GKT AF +P L L NGP++
Sbjct: 86 LQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRLAELHDLNGPSRK 145
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKG 237
++ LVL PTRELA QV E F Y + T +YGG+ Y Q L++G
Sbjct: 146 TQ---------ALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQLAGLRRG 196
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
VV+GTPGR+ DHI +G++DLS L++ VLDEADEMLRMGF +DVE I + + +V
Sbjct: 197 AQVVVGTPGRVIDHIAKGSLDLSELQYLVLDEADEMLRMGFADDVEQIFQQTPETRQVA- 255
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P ++ +S ++L + ++ K N + L + + I+
Sbjct: 256 -LFSATMPGQIRRMSKQYLNN---PAEISVKSKTTTGANTKQRYLQVMGPHKLDALTRIL 311
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
G I F TK + LAD L A A++GDI Q QRE T+ + G+ L
Sbjct: 312 EVEEFDG-VIAFVRTKMATEDLADKLKARGFQAAAINGDIPQQQRERTVDALKEGRIDIL 370
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSK 472
VAT+VAARGLD+ + +I + P D E+Y+HR GRTGRAG +G A++ PR K +
Sbjct: 371 VATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRS 430
Query: 473 IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSV-IPAFKSAAEELLNNSGLSAA 531
IE+ + E + P + + AE IT+ +S + AF+ + A+
Sbjct: 431 IEKATRQPVEQMHLPTAETVNTLRLGKFAERITETLESEDVAAFRDLISSYEEEHNVPAS 490
Query: 532 ELLAKALA 539
E +A ALA
Sbjct: 491 E-IAAALA 497
>gi|392960700|ref|ZP_10326165.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans DSM
17108]
gi|421054542|ref|ZP_15517510.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B4]
gi|421057795|ref|ZP_15520561.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B3]
gi|421065831|ref|ZP_15527523.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A12]
gi|421071404|ref|ZP_15532524.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A11]
gi|392440900|gb|EIW18560.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B4]
gi|392447320|gb|EIW24574.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A11]
gi|392454597|gb|EIW31419.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans DSM
17108]
gi|392458035|gb|EIW34626.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A12]
gi|392462136|gb|EIW38252.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B3]
Length = 526
Score = 248 bits (633), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 155/390 (39%), Positives = 217/390 (55%), Gaps = 37/390 (9%)
Query: 117 SVPLREKLKSK----GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT 172
++PL +KL S G E PIQ T +VL+G D++G+A+TG GKT AF +P +E +
Sbjct: 9 TIPLSKKLLSAIAEMGFEEPSPIQNQTIPLVLEGHDVIGQAQTGTGKTAAFGIPAIEKIA 68
Query: 173 NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF 232
+ R VLVL PTRELA QV E+ G + + +YGG P Q
Sbjct: 69 D-----------SRQIQVLVLTPTRELAIQVSEELAKIGKFKRIKTLPIYGGQPIDRQIK 117
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L+ G+ VVIGTPGR+ DHI R I L ++K +LDEADEML MGFVED+E I+ +V
Sbjct: 118 ALRMGVHVVIGTPGRLLDHIRRKTIKLDAVKTLILDEADEMLDMGFVEDIETIMQEVPVE 177
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QTLLFSAT+P + ++ K++ ++ KTI S N + +P +
Sbjct: 178 GR-QTLLFSATMPGPIATLARKYM-NNPKTI----------SINREQLTVPLIDQIYYET 225
Query: 353 ---IPDIIRCYS--SGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLA 403
+ + R + G++IIF TK L L G A LHGD+ Q+QR+ +
Sbjct: 226 REKLEALCRVLDVETTGKSIIFCRTKRGVDDLVVSLQGRGYMADGLHGDLSQAQRDRVMK 285
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
FR GK L+AT+VAARG+DI+D+ + + P+D EAY+HR GRTGRAG GVA+
Sbjct: 286 KFRDGKLELLIATDVAARGIDIDDITHVFNYDIPQDNEAYVHRIGRTGRAGKKGVAITFI 345
Query: 464 DPRKSSVSK-IERESGVKFEHISAPQPADI 492
+PR+ K IE+ + + P ADI
Sbjct: 346 NPREYRQLKLIEKLTKSRIVRKQLPSAADI 375
>gi|376284519|ref|YP_005157729.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae 31A]
gi|371578034|gb|AEX41702.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae 31A]
Length = 680
Score = 248 bits (633), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 147/397 (37%), Positives = 227/397 (57%), Gaps = 23/397 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +++ G D++G A+TG GKT AF LPIL + KK R
Sbjct: 86 GFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTAAFALPILSRID------VKK----RH 135
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P L+L PTRELA QV + F + +G + +YGG Y Q L++G +++GTPG
Sbjct: 136 PQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRRGAQIIVGTPG 195
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+E+G++D+S+L+F VLDEADEML MGF EDVE IL + +V LFSAT+P+
Sbjct: 196 RVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVA--LFSATMPN 253
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ +S ++K D I + + + +TN+ L + + + I+
Sbjct: 254 GIRRLSRDYMK-DPHEIQV--KSQTRTNTNITQRYLNVAHRNKLDALTRILEVTEFEA-M 309
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK ++A+ L A A++GDI Q+QRE T+ + G+ LVAT+VAARG
Sbjct: 310 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 369
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKF 481
LD+ + + + P D E+Y+HR GRTGRAG +G A++ PR + + IER + K
Sbjct: 370 LDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNAKL 429
Query: 482 EHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKS 517
+ P ++ ++ + A++IT+ + D + F+S
Sbjct: 430 IEMDLPTVDEVNESRKAKFADSITESLEDDQVAIFRS 466
>gi|308071203|ref|YP_003872808.1| ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
gi|305860482|gb|ADM72270.1| Probable ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
Length = 559
Score = 248 bits (633), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 148/374 (39%), Positives = 218/374 (58%), Gaps = 37/374 (9%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E LK +GI S P+Q + ++++G D++ A TG GKTLAF+LPIL+ L
Sbjct: 25 EALKEQGISSPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQKLNLDK------ 78
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGA-VGLTSCCLYGGAPYHAQEFKLKKGIDV 240
R P LV+ PTRELA Q+ E+ + L+ +YGG Q KLK G +
Sbjct: 79 ----RHPQALVIAPTRELALQITEEANRLAATEPSLSLLAVYGGQDVERQLRKLKGGAQL 134
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
+IGTPGR+ DH+ RG +DL +K VLDEAD+ML MGF+ DVE IL +V + QT+LF
Sbjct: 135 IIGTPGRLLDHLRRGTLDLGGIKMLVLDEADQMLHMGFLNDVETILQEV--PYRRQTMLF 192
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV-----RHIVLPCSSSARSQVIPD 355
SAT+P+ ++ ++ ++ + +D+ K+K++++V R +V+ + + Q + D
Sbjct: 193 SATMPAGIRKLARVYMN---EPVDV----KVKSASSVPVSQIRQVVVQTTDRGKQQALVD 245
Query: 356 II---RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSG 408
++ R Y + +IF TK A++L + L + LHGD+ Q++RE + FR
Sbjct: 246 MLNTDRPYLA----VIFCRTKRRAAKLNEELQEMGFESGELHGDLSQNKREQVMKAFREA 301
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK- 467
K LVAT+VAARGLD+ V + + P+D E+YIHR GRTGRAG GVAV L PR
Sbjct: 302 KLQLLVATDVAARGLDVEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDV 361
Query: 468 SSVSKIERESGVKF 481
+ I+R +GV F
Sbjct: 362 PELRNIQRVAGVTF 375
>gi|376248300|ref|YP_005140244.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC04]
gi|376251090|ref|YP_005137971.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC03]
gi|376256907|ref|YP_005144798.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae VA01]
gi|372112594|gb|AEX78653.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC03]
gi|372114868|gb|AEX80926.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC04]
gi|372119424|gb|AEX83158.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae VA01]
Length = 682
Score = 248 bits (633), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 147/397 (37%), Positives = 227/397 (57%), Gaps = 23/397 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +++ G D++G A+TG GKT AF LPIL + KK R
Sbjct: 86 GFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTAAFALPILSRID------VKK----RH 135
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P L+L PTRELA QV + F + +G + +YGG Y Q L++G +++GTPG
Sbjct: 136 PQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRRGAQIIVGTPG 195
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+E+G++D+S+L+F VLDEADEML MGF EDVE IL + +V LFSAT+P+
Sbjct: 196 RVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVA--LFSATMPN 253
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ +S ++K D I + + + +TN+ L + + + I+
Sbjct: 254 GIRRLSRDYMK-DPHEIQV--KSQTRTNTNITQRYLNVAHRNKLDALTRILEVTEFEA-M 309
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK ++A+ L A A++GDI Q+QRE T+ + G+ LVAT+VAARG
Sbjct: 310 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 369
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKF 481
LD+ + + + P D E+Y+HR GRTGRAG +G A++ PR + + IER + K
Sbjct: 370 LDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNAKL 429
Query: 482 EHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKS 517
+ P ++ ++ + A++IT+ + D + F+S
Sbjct: 430 IEMDLPTVDEVNESRKAKFADSITESLEDDQVAIFRS 466
>gi|91794665|ref|YP_564316.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
gi|91716667|gb|ABE56593.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
Length = 611
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 160/434 (36%), Positives = 237/434 (54%), Gaps = 25/434 (5%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S L L G E+ PIQ+ + D ++ G D++G+A+TG GKT AF LP+L
Sbjct: 13 LSENLLRALDELGYENPTPIQSASIDPLMAGKDIIGQAQTGTGKTGAFALPLL------- 65
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
K K AP +LVL PTRELA QV E F Y + G +YGG H Q L
Sbjct: 66 NKVDMKIN---APQILVLAPTRELAVQVAEAFGSYAKHMKGFHVLPIYGGQSMHQQLSAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL-GKVEDAN 293
K+G V++GTPGR+ DH+ RG + L SLK VLDEADEML+MGF++D+E +L K +D+
Sbjct: 123 KRGPQVIVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWVLEHKPKDS- 181
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
Q LFSAT+P +K ++ K L ++ I + + S + R + + S + + +
Sbjct: 182 --QLALFSATMPEQIKRVAAKHL-TNPVNISIAASTTTVESIDQRFVQV--SQHNKLEAL 236
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409
++ ++ G IIF T+ S +LA+ L + LHGD+ Q RE + + GK
Sbjct: 237 VRVLEVENTEG-VIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGK 295
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS 469
L+AT+VAARGLD+ + ++ + P D EAY+HR GRTGRAG TG+A++ R+
Sbjct: 296 LDILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMR 355
Query: 470 VSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGL 528
+ + IER + + + P P +A+ E I + + + KSA EL +
Sbjct: 356 MLRTIERATNSRIAPMKVPSPESVAERRLSRLGELIQETLNGDLDFMKSAVAELCQQLEV 415
Query: 529 SAAELLAKALAKAV 542
+LLA AL + V
Sbjct: 416 D-TDLLAAALLQQV 428
>gi|376293035|ref|YP_005164709.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC02]
gi|372110358|gb|AEX76418.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC02]
Length = 682
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 147/397 (37%), Positives = 227/397 (57%), Gaps = 23/397 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +++ G D++G A+TG GKT AF LPIL + KK R
Sbjct: 86 GFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTAAFALPILSRID------VKK----RH 135
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P L+L PTRELA QV + F + +G + +YGG Y Q L++G +++GTPG
Sbjct: 136 PQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRRGAQIIVGTPG 195
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+E+G++D+S+L+F VLDEADEML MGF EDVE IL + +V LFSAT+P+
Sbjct: 196 RVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVA--LFSATMPN 253
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ +S ++K D I + + + +TN+ L + + + I+
Sbjct: 254 GIRRLSRDYMK-DPHEIQV--KSQTRTNTNITQRYLNVAHRNKLDALTRILEVTEFEA-M 309
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK ++A+ L A A++GDI Q+QRE T+ + G+ LVAT+VAARG
Sbjct: 310 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 369
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKF 481
LD+ + + + P D E+Y+HR GRTGRAG +G A++ PR + + IER + K
Sbjct: 370 LDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNAKL 429
Query: 482 EHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKS 517
+ P ++ ++ + A++IT+ + D + F+S
Sbjct: 430 IEMDLPTVDEVNESRKAKFADSITESLEDDQVAIFRS 466
>gi|444305942|ref|ZP_21141717.1| DNA/RNA helicase [Arthrobacter sp. SJCon]
gi|443481746|gb|ELT44666.1| DNA/RNA helicase [Arthrobacter sp. SJCon]
Length = 557
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 145/390 (37%), Positives = 217/390 (55%), Gaps = 11/390 (2%)
Query: 91 VEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLV 150
+EPE + E+ + + + + + E L GI FPIQAMT + L G D++
Sbjct: 19 IEPEETIISDEKPHEIAEKSFADYNVREDIVESLADAGITHPFPIQAMTLPVALSGHDII 78
Query: 151 GRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210
G+A+TG GKTL F +P L+ + K AP LV++PTRELA QV D
Sbjct: 79 GQAKTGTGKTLGFGIPALQRVIGQDDPGYAKLAVPGAPQALVIVPTRELAVQVANDLQTA 138
Query: 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270
+YGG Y Q LK+G++VV+GTPGR+ D ++ ++ L ++K VLDEA
Sbjct: 139 SRKRNARIATIYGGRAYEPQVEALKQGVEVVVGTPGRLIDLYKQKHLSLKNVKIVVLDEA 198
Query: 271 DEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK 330
DEML +GF+ DVE ++ QTLLFSAT+P V ++ +++ +++
Sbjct: 199 DEMLDLGFLPDVETLIAATPAVR--QTLLFSATMPGPVIAMARRYMTQPTHIRAADPDDE 256
Query: 331 MKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GA 386
++R ++ S +++V+ I++ GRTIIFT+TK +A+++A+ L A
Sbjct: 257 GLTKRDIRQLIYRAHSMDKTEVVARILQARGR-GRTIIFTKTKRTAAKVAEELVDRGFAA 315
Query: 387 RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHR 446
A+HGD+ Q RE L FR+ K LVAT+VAARG+D+ DV +I + D + Y+HR
Sbjct: 316 AAIHGDLGQGAREQALRAFRNNKVDVLVATDVAARGIDVEDVTHVINYQCVEDEKIYLHR 375
Query: 447 SGRTGRAGNTGVAVMLYD----PRKSSVSK 472
GRTGRAGN G AV D PR + ++K
Sbjct: 376 VGRTGRAGNKGTAVTFVDWDDVPRWALINK 405
>gi|325963995|ref|YP_004241901.1| DNA/RNA helicase [Arthrobacter phenanthrenivorans Sphe3]
gi|323470082|gb|ADX73767.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
Sphe3]
Length = 564
Score = 248 bits (632), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 145/390 (37%), Positives = 216/390 (55%), Gaps = 11/390 (2%)
Query: 91 VEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLV 150
+EPE + E+ + + F + + E L GI FPIQAMT + L G D++
Sbjct: 19 IEPEETIISDEKPHEIEEKSFADFNVRADIVESLADAGITHPFPIQAMTLPVALSGHDII 78
Query: 151 GRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210
G+A+TG GKTL F +P L+ + +K AP LV++PTRELA QV D
Sbjct: 79 GQAKTGTGKTLGFGIPALQRVVGRDDAGYEKLAVPGAPQALVIVPTRELAVQVANDLQTA 138
Query: 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270
+YGG Y Q LK G++VV+GTPGR+ D ++ ++ L ++K +LDEA
Sbjct: 139 SRKRNARIATIYGGRAYEPQVEALKNGVEVVVGTPGRLIDLYKQKHLSLKNVKVVILDEA 198
Query: 271 DEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK 330
DEML +GF+ DVE ++ QTLLFSAT+P V ++ +++ +++
Sbjct: 199 DEMLDLGFLPDVETLIAATPAVR--QTLLFSATMPGPVIAMARRYMTQPTHIRAADPDDE 256
Query: 331 MKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GA 386
++R ++ S + +V+ I++ GRTIIFT+TK +A+++A+ L A
Sbjct: 257 GLTKRDIRQLIYRAHSMDKIEVVARILQAKGR-GRTIIFTKTKRTAAKVAEELVDRGFAA 315
Query: 387 RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHR 446
A+HGD+ Q RE L FR+ K LVAT+VAARG+D++DV +I + D + Y+HR
Sbjct: 316 AAIHGDLGQGAREQALRAFRNNKVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHR 375
Query: 447 SGRTGRAGNTGVAVMLYD----PRKSSVSK 472
GRTGRAGN G AV D PR ++K
Sbjct: 376 VGRTGRAGNKGTAVTFVDWDDMPRWGLINK 405
>gi|254372659|ref|ZP_04988148.1| ATP-dependent RNA helicase [Francisella tularensis subsp. novicida
GA99-3549]
gi|151570386|gb|EDN36040.1| ATP-dependent RNA helicase [Francisella novicida GA99-3549]
Length = 569
Score = 248 bits (632), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 149/375 (39%), Positives = 214/375 (57%), Gaps = 22/375 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQ +L G D++G+A+TG GKT AF LP L N AS+ RA
Sbjct: 26 GYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALP----LINNMDLASRD----RA 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F+ + V L C+YGG Y +Q LK+G+ VV+GT G
Sbjct: 78 PQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVKVVVGTTG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHIE+G + L +L+ VLDEADEMLRMGF++DV+ +L V + + Q LLFSAT+P+
Sbjct: 138 RVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHV--SEQCQRLLFSATIPT 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ I ++L++ K + K K + V + + + ++ + G
Sbjct: 196 DIADIIEEYLRNPCK---IQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG-V 251
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF +TK S ++ D L A++GD+QQSQRE + FRS K LVAT+V ARG
Sbjct: 252 IIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS--VSKIERESGVK 480
+D+ + +I + P D + Y+HR GRTGRAG G ++ L P K + +ER +G
Sbjct: 312 IDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLV-PLKEMRFLRTLERFTGSP 370
Query: 481 FEHISAPQPADIAKA 495
+ + P D+A++
Sbjct: 371 MQEVFMPSAKDLAQS 385
>gi|392305118|emb|CCI71481.1| putative ATP-dependent RNA helicase DDX17 [Paenibacillus polymyxa
M1]
Length = 535
Score = 248 bits (632), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 149/374 (39%), Positives = 218/374 (58%), Gaps = 37/374 (9%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E LK +GI + P+Q + ++++G D++ A TG GKTLAF+LPIL+ L
Sbjct: 25 EALKEQGISAPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQKLNLDK------ 78
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGA-VGLTSCCLYGGAPYHAQEFKLKKGIDV 240
R P LV+ PTRELA Q+ E+ A L+ +YGG Q KLK G +
Sbjct: 79 ----RHPQALVIAPTRELALQITEEAKCLAAAEPSLSLLAVYGGQDVERQLRKLKGGAQL 134
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
+IGTPGR+ DH+ RG +DL +K VLDEAD+ML MGF+ DVE IL +V + QT+LF
Sbjct: 135 IIGTPGRLLDHLRRGTLDLGGIKMLVLDEADQMLHMGFLNDVETILQEV--PYRRQTMLF 192
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV-----RHIVLPCSSSARSQVIPD 355
SAT+P+ ++ ++ ++ + +D+ K+K++++V R +V+ + + Q + D
Sbjct: 193 SATMPAGIRKLARVYMN---EPVDV----KVKSASSVPVSQIRQVVVQTTDRGKQQALVD 245
Query: 356 II---RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSG 408
++ R Y + +IF TK AS+L + L + LHGD+ Q++RE + FR
Sbjct: 246 MLNTDRPYLA----VIFCRTKRRASKLNEELQEMGFESGELHGDLSQNKREQVMKAFREA 301
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK- 467
K LVAT+VAARGLD+ V + + P+D E+YIHR GRTGRAG GVAV L PR
Sbjct: 302 KLQLLVATDVAARGLDVEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDV 361
Query: 468 SSVSKIERESGVKF 481
+ I+R +GV F
Sbjct: 362 PELRNIQRVAGVTF 375
>gi|376254085|ref|YP_005142544.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae PW8]
gi|372117169|gb|AEX69639.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae PW8]
Length = 705
Score = 248 bits (632), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 147/397 (37%), Positives = 227/397 (57%), Gaps = 23/397 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +++ G D++G A+TG GKT AF LPIL + KK R
Sbjct: 86 GFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTAAFALPILSRID------VKK----RH 135
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P L+L PTRELA QV + F + +G + +YGG Y Q L++G +++GTPG
Sbjct: 136 PQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRRGAQIIVGTPG 195
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+E+G++D+S+L+F VLDEADEML MGF EDVE IL + +V LFSAT+P+
Sbjct: 196 RVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVA--LFSATMPN 253
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ +S ++K D I + + + +TN+ L + + + I+
Sbjct: 254 GIRRLSRDYMK-DPHEIQV--KSQTRTNTNITQRYLNVAHRNKLDALTRILEVTEFEA-M 309
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK ++A+ L A A++GDI Q+QRE T+ + G+ LVAT+VAARG
Sbjct: 310 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 369
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKF 481
LD+ + + + P D E+Y+HR GRTGRAG +G A++ PR + + IER + K
Sbjct: 370 LDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNAKL 429
Query: 482 EHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKS 517
+ P ++ ++ + A++IT+ + D + F+S
Sbjct: 430 IEMDLPTVDEVNESRKAKFADSITESLEDDQVAIFRS 466
>gi|373252926|ref|ZP_09541044.1| DNA/RNA helicase [Nesterenkonia sp. F]
Length = 543
Score = 248 bits (632), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 142/345 (41%), Positives = 200/345 (57%), Gaps = 6/345 (1%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L+ KGI + FPIQA T + L GSD++G+A+TG GKTL F +P L+ +T
Sbjct: 37 LEEKGIVTPFPIQAETLPIALGGSDIIGQAKTGTGKTLGFGIPALQRVTTPDDAGFDGME 96
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
AP L++ PTRELA QV ED V G G +YGG Y Q +L++G+++V+G
Sbjct: 97 APGAPQALIVTPTRELAVQVAEDIKVAGAQRGARVATIYGGRAYEPQIEELQRGVEIVVG 156
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D + + L ++ VLDEADEML +GF+ DVE IL V + + QT+LFSAT
Sbjct: 157 TPGRLIDLHRQRYLKLKNINIVVLDEADEMLDLGFLPDVEKILSAVPEIGR-QTMLFSAT 215
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P V ++ +++ ++ ++R ++ + +VI I++
Sbjct: 216 MPGPVVSMARRYMTKPTHIRAADPADEGVTKKDIRQVIYRAHQLDKDEVIARILQAEGR- 274
Query: 364 GRTIIFTETKESASQL-ADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
GRTIIFT TK A +L A+L+ A A+HGD+ Q RE L FR+ K LVAT+VA
Sbjct: 275 GRTIIFTRTKRQADKLSAELISRGFAAGAIHGDLGQGAREQALRAFRTEKIDVLVATDVA 334
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
ARG+D+ DV +I P D +AY+HR GRTGRAG G AV D
Sbjct: 335 ARGIDVTDVTHVINLTAPEDEKAYLHRIGRTGRAGQKGTAVTFVD 379
>gi|385792629|ref|YP_005825605.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|328676775|gb|AEB27645.1| Cold-shock DEAD-box protein A [Francisella cf. novicida Fx1]
Length = 569
Score = 248 bits (632), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 146/375 (38%), Positives = 213/375 (56%), Gaps = 22/375 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQ +L G D++G+A+TG GKT AF LP++ ++ RA
Sbjct: 26 GYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNI--------DLKSRDRA 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F+ + V L C+YGG Y +Q LK+G+ VV+GT G
Sbjct: 78 PQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVKVVVGTTG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHIE+G + L +L+ VLDEADEMLRMGF++DV+ +L V D + Q LLFSAT+P+
Sbjct: 138 RVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSD--ECQRLLFSATIPT 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ I ++L++ K + K K + V + + + ++ + G
Sbjct: 196 DIADIIEEYLRNPCK---IQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG-V 251
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF +TK S ++ D L A++GD+QQSQRE + FRS K LVAT+V ARG
Sbjct: 252 IIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS--VSKIERESGVK 480
+D+ + +I + P D + Y+HR GRTGRAG G ++ L P K + +ER +G
Sbjct: 312 IDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLV-PLKEMRFLRTLERFTGSP 370
Query: 481 FEHISAPQPADIAKA 495
+ + P D+A++
Sbjct: 371 MQEVFMPSAKDLAQS 385
>gi|334337081|ref|YP_004542233.1| DEAD/DEAH box helicase [Isoptericola variabilis 225]
gi|334107449|gb|AEG44339.1| DEAD/DEAH box helicase domain protein [Isoptericola variabilis 225]
Length = 607
Score = 248 bits (632), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 148/387 (38%), Positives = 219/387 (56%), Gaps = 22/387 (5%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ PL+ + G + PIQA +L G D+ G A+TG GKT AF LP+L ++
Sbjct: 19 LPAPLQAAVDDLGFTTPSPIQARAIPALLSGRDITGVAQTGTGKTAAFGLPLLAAVDPA- 77
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
AS G+ +A LVL PTRELA QV + + + + GL +YGGAPY Q+ L
Sbjct: 78 --ASVAGGHVQA---LVLTPTRELAIQVADAIESFATHLPGLRVLSVYGGAPYVPQQRAL 132
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
+ G+ VV+GTPGR+ DH+ERG + L +++F VLDEADEMLRMGF EDVE I G+ + +
Sbjct: 133 RDGVHVVVGTPGRVMDHMERGALSLDAVRFLVLDEADEMLRMGFAEDVEKIFGQAPE--R 190
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR--HIVLPCSSSARSQV 352
Q LFSAT+P ++ ++ L +++ + + +TNV + ++P S V
Sbjct: 191 RQVALFSATMPPAIRTVAETHLTD---PVEITVSRQSSTTTNVEQSYAIVPFRHKVGSLV 247
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408
+ S TI+FT T+ +A ++ L A + GD+ Q +RE + RSG
Sbjct: 248 ---RVLATSDADATIVFTRTRAAAEEVGAALVERGISASTISGDVAQKERERIVERLRSG 304
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-K 467
LVAT+VAARGLD++ + L++ + PR+ EAY+HR GRTGRAG TG A+ P +
Sbjct: 305 ALDVLVATDVAARGLDVDRIGLVVNFDIPREAEAYVHRIGRTGRAGRTGKALSFVTPHER 364
Query: 468 SSVSKIERESGVKFEHISAPQPADIAK 494
+ IER + + P P D+++
Sbjct: 365 GKLKHIERTIRAELTEVEIPSPKDVSE 391
>gi|269468408|gb|EEZ80073.1| hypothetical protein Sup05_1317 [uncultured SUP05 cluster
bacterium]
Length = 614
Score = 248 bits (632), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 160/440 (36%), Positives = 232/440 (52%), Gaps = 44/440 (10%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F +S + + L S G E+ PIQ +L+G D++G+A+TG GKT AF LP+L+++
Sbjct: 15 SDFGLSDSILKVLDSIGYETPSPIQEQCITHLLNGEDIIGQAQTGTGKTAAFALPLLDNI 74
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPYHAQ 230
AP +L+L PTRELA QV E VY G G +YGG Y Q
Sbjct: 75 DLSLN----------APQLLILAPTRELAIQVSEAVQVYARGLKGFHVLPIYGGQSYDIQ 124
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
LK+G+ V+GTPGR+ DHI++G + L LK VLDEADEML+MGF++D++ ++ ++
Sbjct: 125 LRPLKRGVHCVVGTPGRVMDHIKKGTLKLDQLKSFVLDEADEMLKMGFIDDIKWVMERIP 184
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP--CSSSA 348
+ Q LFSAT+P+ +K ++ KFL + K K+K T + C
Sbjct: 185 EQR--QIALFSATMPNIIKRVAEKFLNNPKIV-------KVKTKTETAPTIGQKYCLVGG 235
Query: 349 RSQVIPDIIRCY--SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTL 402
SQ + + R + IIF TK +L++ L A A++GDIQQSQRE +
Sbjct: 236 LSQKLDALTRILEVTEFDAMIIFARTKTLTIELSEKLSARGFSAEAINGDIQQSQREKII 295
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
F+ G LVAT+VAARGLD+ + ++ + P+D E Y+HR GRTGRAG G A++
Sbjct: 296 NKFKKGGIDILVATDVAARGLDVPRISHVVNYDIPQDAETYVHRIGRTGRAGREGEAILF 355
Query: 463 YDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEE 521
R + ++ IER + K E + P T +++ I FK E
Sbjct: 356 VSHRERRMLNNIERVTRQKIEPLELP---------------TAKIINEKRIDTFKKRITE 400
Query: 522 LLNNSGLSAAELLAKALAKA 541
+NN LS E L +A
Sbjct: 401 TINNQDLSVFEKLVTEFQEA 420
>gi|284006674|emb|CBA71936.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase)
[Arsenophonus nasoniae]
Length = 615
Score = 248 bits (632), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 165/452 (36%), Positives = 242/452 (53%), Gaps = 64/452 (14%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ L G E PIQ +LDG D++G A+TG GKT AF LP+L ++
Sbjct: 19 LSTPILSALNDLGYEKPSPIQQQCIPYLLDGCDVLGMAQTGSGKTAAFSLPLLHNIDITL 78
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHE---DFDVYGGAVGLTSCCLYGGAPYHAQEF 232
+AP +LVL PTRELA QV E +F + +V + LYGG Y +Q
Sbjct: 79 ----------KAPQILVLAPTRELAVQVAEAMGEFSKHMRSVNV--VALYGGQRYDSQLR 126
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G +V+GTPGR+ DH++RG ++LS L+ VLDEADEMLRMGF+EDVE I+ ++
Sbjct: 127 ALRQGPQIVVGTPGRLLDHLKRGTLNLSHLRGLVLDEADEMLRMGFIEDVENIMSQIPSE 186
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QT LFSAT+P ++ I+ +F+KS K+ I + S + R
Sbjct: 187 H--QTALFSATMPEAIRRITRRFMKSPKE------------------ISIQSSVTTR--- 223
Query: 353 IPDIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALH 390
PDI + Y S G R IIF TK + ++A+ L + AL+
Sbjct: 224 -PDITQSYWSVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSSALN 282
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
GD+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRT
Sbjct: 283 GDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRT 342
Query: 451 GRAGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETIT-QVS 508
GRAG G A++ D R+ + + IER + P A +++ + AE I Q+
Sbjct: 343 GRAGRAGRAILFVDNRERRLLRNIERTMKQPITEVELPSAAVLSERRQAKFAENIQKQLE 402
Query: 509 DSVIPAFKSAAEELLNNSGLSAAELLAKALAK 540
+ +++ +L+ N L E LA AL K
Sbjct: 403 SGDLEKYRALLTKLVANDELD-METLASALLK 433
>gi|309792203|ref|ZP_07686675.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
DG-6]
gi|308225744|gb|EFO79500.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
DG6]
Length = 523
Score = 248 bits (632), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 153/388 (39%), Positives = 212/388 (54%), Gaps = 24/388 (6%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S +S P+ L G + PIQ ++L SD++ +A+TG GKT AF LPI++ L
Sbjct: 5 SELGLSEPILRVLGDLGYDEPTPIQEQAIPVMLSNSDVIAQAQTGTGKTAAFALPIVQRL 64
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
+ R P L+L PTRELA QV E YG ++ +YGG P + Q
Sbjct: 65 RDE-----------RVPQALILAPTRELAMQVAEAIYKYGKGRRISVAPVYGGQPIYRQL 113
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
L++G+ VV+GTPGRI DH+ RG + L + VLDEADEML MGF ED+E IL +
Sbjct: 114 RALEQGVQVVVGTPGRIMDHMRRGTLVLDQISTVVLDEADEMLDMGFAEDIEFILQQT-- 171
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI-VLPCSSSARS 350
+ QT LFSAT+P V+ + ++ + D K I + + T + V+P
Sbjct: 172 PQQRQTALFSATMPEAVQGLVQRYTR-DAKRISIAAEQLATPRTRQTYYEVMPREKLDAL 230
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFR 406
I D+ + IIF T+ A L + L G + LHGD+ Q+QR+ + FR
Sbjct: 231 CRILDV----ETPSSAIIFCRTRSEADALGESLQGRGYLSEVLHGDMSQAQRDRVMKRFR 286
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
G+ LVAT+VAARGLDI DV +I + P D EAY+HR GRTGRAG TG+A+ L PR
Sbjct: 287 EGQAELLVATDVAARGLDIPDVTHVINYDVPNDPEAYVHRIGRTGRAGRTGLAITLITPR 346
Query: 467 KSSVSK-IERESGVKFEHISAPQPADIA 493
+ + + IER S + + P AD+A
Sbjct: 347 ERRMLQIIERASRSRIQRQKLPSLADVA 374
>gi|38233613|ref|NP_939380.1| DEAD/DEAH box helicase [Corynebacterium diphtheriae NCTC 13129]
gi|376242613|ref|YP_005133465.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae CDCE 8392]
gi|38199873|emb|CAE49539.1| DEAD-box helicase [Corynebacterium diphtheriae]
gi|372105855|gb|AEX71917.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae CDCE 8392]
Length = 680
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 147/397 (37%), Positives = 227/397 (57%), Gaps = 23/397 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +++ G D++G A+TG GKT AF LPIL + KK R
Sbjct: 86 GFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTAAFALPILSRID------VKK----RH 135
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P L+L PTRELA QV + F + +G + +YGG Y Q L++G +++GTPG
Sbjct: 136 PQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRRGAQIIVGTPG 195
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+E+G++D+S+L+F VLDEADEML MGF EDVE IL + +V LFSAT+P+
Sbjct: 196 RVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVA--LFSATMPN 253
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ +S ++K D I + + + +TN+ L + + + I+
Sbjct: 254 GIRRLSRDYMK-DPHEIQV--KSQTRTNTNITQRYLNVAHRNKLDALTRILEVTEFEA-M 309
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK ++A+ L A A++GDI Q+QRE T+ + G+ LVAT+VAARG
Sbjct: 310 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 369
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKF 481
LD+ + + + P D E+Y+HR GRTGRAG +G A++ PR + + IER + K
Sbjct: 370 LDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNAKL 429
Query: 482 EHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKS 517
+ P ++ ++ + A++IT+ + D + F+S
Sbjct: 430 IEMDLPTVDEVNESRKAKFADSITESLEDDQVAIFRS 466
>gi|419860593|ref|ZP_14383234.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|387982987|gb|EIK56486.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 667
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 147/397 (37%), Positives = 227/397 (57%), Gaps = 23/397 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +++ G D++G A+TG GKT AF LPIL + KK R
Sbjct: 86 GFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTAAFALPILSRID------VKK----RH 135
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P L+L PTRELA QV + F + +G + +YGG Y Q L++G +++GTPG
Sbjct: 136 PQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRRGAQIIVGTPG 195
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+E+G++D+S+L+F VLDEADEML MGF EDVE IL + +V LFSAT+P+
Sbjct: 196 RVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVA--LFSATMPN 253
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ +S ++K D I + + + +TN+ L + + + I+
Sbjct: 254 GIRRLSRDYMK-DPHEIQV--KSQTRTNTNITQRYLNVAHRNKLDALTRILEVTEFEA-M 309
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK ++A+ L A A++GDI Q+QRE T+ + G+ LVAT+VAARG
Sbjct: 310 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 369
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKF 481
LD+ + + + P D E+Y+HR GRTGRAG +G A++ PR + + IER + K
Sbjct: 370 LDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNAKL 429
Query: 482 EHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKS 517
+ P ++ ++ + A++IT+ + D + F+S
Sbjct: 430 IEMDLPTVDEVNESRKAKFADSITESLEDDQVAIFRS 466
>gi|310644435|ref|YP_003949194.1| DEAD/DEAH box helicase [Paenibacillus polymyxa SC2]
gi|309249386|gb|ADO58953.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2]
Length = 525
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 149/374 (39%), Positives = 218/374 (58%), Gaps = 37/374 (9%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E LK +GI + P+Q + ++++G D++ A TG GKTLAF+LPIL+ L
Sbjct: 15 EALKEQGISAPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQKLNLDK------ 68
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGA-VGLTSCCLYGGAPYHAQEFKLKKGIDV 240
R P LV+ PTRELA Q+ E+ A L+ +YGG Q KLK G +
Sbjct: 69 ----RHPQALVIAPTRELALQITEEAKCLAAAEPSLSLLAVYGGQDVERQLRKLKGGAQL 124
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
+IGTPGR+ DH+ RG +DL +K VLDEAD+ML MGF+ DVE IL +V + QT+LF
Sbjct: 125 IIGTPGRLLDHLRRGTLDLGGIKMLVLDEADQMLHMGFLNDVETILQEV--PYRRQTMLF 182
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV-----RHIVLPCSSSARSQVIPD 355
SAT+P+ ++ ++ ++ + +D+ K+K++++V R +V+ + + Q + D
Sbjct: 183 SATMPAGIRKLARVYMN---EPVDV----KVKSASSVPVSQIRQVVVQTTDRGKQQALVD 235
Query: 356 II---RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSG 408
++ R Y + +IF TK AS+L + L + LHGD+ Q++RE + FR
Sbjct: 236 MLNTDRPYLA----VIFCRTKRRASKLNEELQEMGFESGELHGDLSQNKREQVMKAFREA 291
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK- 467
K LVAT+VAARGLD+ V + + P+D E+YIHR GRTGRAG GVAV L PR
Sbjct: 292 KLQLLVATDVAARGLDVEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDV 351
Query: 468 SSVSKIERESGVKF 481
+ I+R +GV F
Sbjct: 352 PELRNIQRVAGVTF 365
>gi|320451062|ref|YP_004203158.1| DEAD/DEAH box helicase [Thermus scotoductus SA-01]
gi|320151231|gb|ADW22609.1| DEAD-box ATP-dependent RNA helicase [Thermus scotoductus SA-01]
Length = 521
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 164/381 (43%), Positives = 227/381 (59%), Gaps = 23/381 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
++E L +GI + PIQA + L+G DL+G+ARTG GKTLAF LPI + L +AS
Sbjct: 12 IKEALLRRGITAPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAQGL-----EAS 66
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
K+ GR P LVL PTRELA QV + A L +YGG Y Q+ +L +G D
Sbjct: 67 KER--GRLPRALVLTPTRELALQVSGELQAV--APHLKVVTVYGGTGYGKQKEELTRGCD 122
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+ TPGR D++ +G +DLS ++ VLDEADEML MGF E+VE IL + QTLL
Sbjct: 123 VVVATPGRALDYLRQGALDLSQVRIAVLDEADEMLSMGFEEEVEAILSAT--PKERQTLL 180
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSATLPSW + ++ +++KS I++V E + +P R ++ D++
Sbjct: 181 FSATLPSWARKLAERYMKS-PVVINVVREEGITYQEE----AIPAPGD-RLSLLSDVL-F 233
Query: 360 YSSGGRTIIFT----ETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
+ R I+FT ET+E A+ L L ARA+HGD+ Q+ RE + FR G+ LVA
Sbjct: 234 VKAPKRAIVFTRTKAETEEVATGLLRLGHPARAIHGDLSQTDRERVMRAFREGEVRVLVA 293
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIE 474
T+VAARGLDI +V L++ P E Y HRSGRTGRAG G V+LY PR + +S++E
Sbjct: 294 TDVAARGLDIPEVDLVVHYRFPDKPETYQHRSGRTGRAGRGGEVVILYGPRERRELSELE 353
Query: 475 RESGVKFEHISAPQPADIAKA 495
R G + ++ P P ++ +A
Sbjct: 354 RAVGRTLKRVNPPTPEEVLEA 374
>gi|375292864|ref|YP_005127403.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae INCA 402]
gi|371582535|gb|AEX46201.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae INCA 402]
Length = 676
Score = 247 bits (631), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 147/397 (37%), Positives = 227/397 (57%), Gaps = 23/397 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +++ G D++G A+TG GKT AF LPIL + KK R
Sbjct: 86 GFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTAAFALPILSRID------VKK----RH 135
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P L+L PTRELA QV + F + +G + +YGG Y Q L++G +++GTPG
Sbjct: 136 PQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRRGAQIIVGTPG 195
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+E+G++D+S+L+F VLDEADEML MGF EDVE IL + +V LFSAT+P+
Sbjct: 196 RVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVA--LFSATMPN 253
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ +S ++K D I + + + +TN+ L + + + I+
Sbjct: 254 GIRRLSRDYMK-DPHEIQV--KSQTRTNTNITQRYLNVAHRNKLDALTRILEVTEFEA-M 309
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK ++A+ L A A++GDI Q+QRE T+ + G+ LVAT+VAARG
Sbjct: 310 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 369
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKF 481
LD+ + + + P D E+Y+HR GRTGRAG +G A++ PR + + IER + K
Sbjct: 370 LDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNAKL 429
Query: 482 EHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKS 517
+ P ++ ++ + A++IT+ + D + F+S
Sbjct: 430 IEMDLPTVDEVNESRKAKFADSITESLEDDQVAIFRS 466
>gi|337290483|ref|YP_004629504.1| hypothetical protein CULC22_00872 [Corynebacterium ulcerans
BR-AD22]
gi|384515395|ref|YP_005710487.1| hypothetical protein CULC809_00857 [Corynebacterium ulcerans 809]
gi|397653720|ref|YP_006494403.1| hypothetical protein CULC0102_0969 [Corynebacterium ulcerans 0102]
gi|334696596|gb|AEG81393.1| hypothetical protein CULC809_00857 [Corynebacterium ulcerans 809]
gi|334698789|gb|AEG83585.1| hypothetical protein CULC22_00872 [Corynebacterium ulcerans
BR-AD22]
gi|393402676|dbj|BAM27168.1| hypothetical protein CULC0102_0969 [Corynebacterium ulcerans 0102]
Length = 674
Score = 247 bits (631), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 154/407 (37%), Positives = 236/407 (57%), Gaps = 31/407 (7%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T ++++G D++G A+TG GKT AF LPIL + KK R
Sbjct: 85 GFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTAAFALPILSRIN------VKK----RH 134
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV + F + +G + +YGG Y Q L++G +++GTPG
Sbjct: 135 PQALVLAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRRGAQIIVGTPG 194
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED--ANKVQTLLFSATL 304
R+ DH+E+G++D+S+L + VLDEADEML MGF ED+E IL ED A+K Q LFSAT+
Sbjct: 195 RVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERIL---EDTPADK-QVALFSATM 250
Query: 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
P+ ++ +S +++K D + I + + + +TN+ L + + + I+
Sbjct: 251 PNGIRRLSKQYMK-DPREIQV--KSETRTNTNITQRFLNVAHRNKLDALTRILEVTEFEA 307
Query: 365 RTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
I+F TK ++A+ L A A++GDI Q+QRE T+ + G+ LVAT+VAA
Sbjct: 308 -MIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 366
Query: 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGV 479
RGLD+ + + + P D E+Y+HR GRTGRAG +G A++ PR + + IER +
Sbjct: 367 RGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNA 426
Query: 480 KFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAF----KSAAEE 521
+ + P ++ ++ + A++IT+ + DS + F KS AEE
Sbjct: 427 ELIEMDLPTVDEVNESRKAKFADSITESLEDSQVAIFRNLIKSYAEE 473
>gi|383820631|ref|ZP_09975884.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium phlei RIVM601174]
gi|383334548|gb|EID12986.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium phlei RIVM601174]
Length = 559
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 153/402 (38%), Positives = 222/402 (55%), Gaps = 29/402 (7%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ IQA T +L GSD+VG A+TG GKT AF +P+L SK R
Sbjct: 32 GYETPSAIQAATIPAMLAGSDVVGLAQTGTGKTAAFAIPLL----------SKIDPKRRD 81
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
LVL PTRELA QV E F YG + + +YGGA Y Q LK+G VV+GTPG
Sbjct: 82 TQALVLAPTRELALQVAEAFGRYGAHLPEINVLPIYGGASYGPQLAGLKRGAQVVVGTPG 141
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+E+G +DLS L + VLDEADEML MGF E+VE IL + + +V LFSAT+P+
Sbjct: 142 RVIDHLEKGRLDLSHLDYLVLDEADEMLTMGFAEEVERILAETPEYKQVA--LFSATMPA 199
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+K I+TK+L +++ K + N+ + + + + ++ G
Sbjct: 200 AIKKITTKYLHD---PVEVTVKSKTATAENISQRYIQVAGPRKMDALTRVLEV-EQGDAM 255
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK++ ++A+ L A A++GDI Q+QRE T+A + G LVAT+VAARG
Sbjct: 256 IVFVRTKQATEEVAERLRARGFAAAAINGDIPQAQRERTIAALKDGTIDILVATDVAARG 315
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKF 481
LD+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + K IE+ + K
Sbjct: 316 LDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGQALLFVTPRERHLLKSIEKATRSKL 375
Query: 482 EHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELL 523
P D+ A+ + + DS+ A + +L
Sbjct: 376 IEAELPSVEDV-------NAQRVAKFRDSISEALNAPGIDLF 410
>gi|348030292|ref|YP_004872978.1| ATP-dependent RNA helicase [Glaciecola nitratireducens FR1064]
gi|347947635|gb|AEP30985.1| ATP-dependent RNA helicase [Glaciecola nitratireducens FR1064]
Length = 584
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 162/428 (37%), Positives = 241/428 (56%), Gaps = 24/428 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L + L+ G E PIQA + ++L G DL+G+A+TG GKT AF LP+L ++ P +
Sbjct: 18 LLQALEKVGYEKPSPIQAKSIPLLLAGHDLLGQAQTGTGKTAAFALPMLANI--DPDENF 75
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGI 238
+ +LVL PTRELA QV E F VY + + +YGG Y Q +LK+G+
Sbjct: 76 TQ--------LLVLAPTRELAIQVAEAFQVYASFSKKIRVLPVYGGQSYDNQIRQLKRGV 127
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
VV+GTPGRI DHI+R + L LKF VLDEADEMLRMGF++DVELIL + QT
Sbjct: 128 QVVVGTPGRIIDHIKRKTLKLDKLKFLVLDEADEMLRMGFIDDVELILSHA--PAERQTA 185
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P +K I+ ++LK+ + + + +++ +R + + + + I+
Sbjct: 186 LFSATMPDAIKKITKRYLKNPEH---VKIESTVSSASMIRQRYCQVAGHHKLEALTRIME 242
Query: 359 CYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G IIF TK + +LAD L L+GDI Q+ RE T+ + G LV
Sbjct: 243 VEEFDG-MIIFVRTKTATVELADKLTARGHVVEPLNGDIPQNSRERTVEKLKRGDIDILV 301
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKI 473
AT+V ARGLD+ V +I + P D E+Y+HR GRTGRAG TG A++ R K + I
Sbjct: 302 ATDVVARGLDVERVSHVINYDIPYDTESYVHRIGRTGRAGRTGDAILFISHREKRLLFAI 361
Query: 474 ERESGVKFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKSAAEELLNNSGLSAAE 532
E+ + + E++ P + + ++ V ++I + +SD I ++ E ++ + S
Sbjct: 362 EKATKQRIENMEIPSISQLNESRLVRFKQSIIEAMSDESIESYIPIVESIMEETEASPDV 421
Query: 533 LLAKALAK 540
++A ALAK
Sbjct: 422 IMA-ALAK 428
>gi|317125686|ref|YP_004099798.1| DEAD/DEAH box helicase [Intrasporangium calvum DSM 43043]
gi|315589774|gb|ADU49071.1| DEAD/DEAH box helicase domain protein [Intrasporangium calvum DSM
43043]
Length = 562
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 146/371 (39%), Positives = 217/371 (58%), Gaps = 14/371 (3%)
Query: 104 ESEHPNA----VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGK 159
++ HP+A + F + + L GI FPIQAMT + L G D++G+A+TG GK
Sbjct: 6 DTSHPHAPEITFADFPVHPEIISALAEWGIIHPFPIQAMTLPVALSGHDIIGQAKTGTGK 65
Query: 160 TLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC 219
TL F +P+L S+ P L + PTRELA QV D + G G+
Sbjct: 66 TLGFGVPMLNSVVAPGDAGFDALPRPGKPQALAVAPTRELAVQVSGDLERAGRHRGIRVL 125
Query: 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV 279
+YGG Y Q L++G++VV+GTPGR+ D ++G++DLS K VLDEADEML +GF+
Sbjct: 126 TVYGGRAYEPQVDALRRGVEVVVGTPGRLIDLAKQGHLDLSQAKVVVLDEADEMLDLGFL 185
Query: 280 EDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NV 337
DVE ++ + A++ QT+LFSAT+P + ++ +++ + I +G+E A T V
Sbjct: 186 PDVETLM-SLTPASR-QTMLFSATMPGAIVTLARRYM-TQPTHIRAMGDENENAHTVKAV 242
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDI 393
V + + +++ +++ G TIIF+ TK +A+++AD L A A+HGD+
Sbjct: 243 EQFVYRAHALDKVEMLSRMLQAKDR-GLTIIFSRTKRTAAKVADELGERGFAAAAIHGDL 301
Query: 394 QQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA 453
Q RE L FR+GK LVAT+VAARG+D+++V +I + P D + Y+HR GRT RA
Sbjct: 302 GQGAREQALRAFRNGKVDVLVATDVAARGIDVDNVTHVINFQCPEDEKTYLHRIGRTARA 361
Query: 454 GNTGVAVMLYD 464
GNTGVAV D
Sbjct: 362 GNTGVAVTFVD 372
>gi|408674498|ref|YP_006874246.1| DEAD/DEAH box helicase domain protein [Emticicia oligotrophica DSM
17448]
gi|387856122|gb|AFK04219.1| DEAD/DEAH box helicase domain protein [Emticicia oligotrophica DSM
17448]
Length = 576
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 165/438 (37%), Positives = 233/438 (53%), Gaps = 29/438 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E PIQ+ VL G D++G+A+TG GKT AF +P +E++ K T
Sbjct: 23 GFEFSTPIQSQGIPAVLRGGDVIGQAQTGTGKTAAFGIPAIEAVD----VEDKNT----- 73
Query: 188 PSVLVLLPTRELAKQVHEDFD-VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
VLV+ PTRELA QV E + GL +YGG Y Q LKKG+ +V+GTPG
Sbjct: 74 -QVLVMCPTRELALQVKEQIQKLAKYKKGLHVAAIYGGESYERQFLALKKGVQIVVGTPG 132
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
RI DHI+R + LSS+K +LDEADEML MGF ED+E IL D QT+LFSAT+
Sbjct: 133 RIMDHIDRKTLSLSSIKMAILDEADEMLNMGFREDIEKILSYAPDER--QTVLFSATMSP 190
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ I+ +F K D + I V E A N+ P A+ +V+ +I ++
Sbjct: 191 EILSIAKRFQK-DPEVIRTVKTEISNA--NIEQFFFPVRREAKMEVMTRLIDV-NNLKLM 246
Query: 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
++F TK ++ L A LHGD++Q R + FR+G LVAT+VAARG
Sbjct: 247 LVFANTKSKVDEIVSELQIRGYAAEGLHGDMRQQVRTQVMNKFRAGTTTILVATDVAARG 306
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKF 481
+D++ V + + P+D+E Y+HR GRTGRAG TG A M R KS + +IE + VK
Sbjct: 307 IDVSGVDAVFNYDVPQDLEYYVHRIGRTGRAGKTGKAFMFISGREKSRLREIEYYTKVKI 366
Query: 482 EHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLN---NSGLSAAELLAKAL 538
E P A++ K + + QV +++ + E+++N N G S ++++ AL
Sbjct: 367 EQGQIPTLAELIKT---RHQKFVEQVRETLTAGIEENYEDIINELSNEGYSDVQIMS-AL 422
Query: 539 AKAVVSAFLFSSSSNSLS 556
K V S N LS
Sbjct: 423 IKMQVGTIKSEFSDNQLS 440
>gi|400535731|ref|ZP_10799267.1| rhlE [Mycobacterium colombiense CECT 3035]
gi|400330774|gb|EJO88271.1| rhlE [Mycobacterium colombiense CECT 3035]
Length = 518
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 149/368 (40%), Positives = 211/368 (57%), Gaps = 27/368 (7%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L KGIES F IQ +T M L G DL+G+ARTG GKT AF +P+L+ +T+G T A G
Sbjct: 27 LAEKGIESPFAIQELTLPMALAGDDLIGQARTGMGKTFAFGVPLLQRITSG-TAARPLNG 85
Query: 184 YGRAPSVLVLLPTRELAKQVHEDF-----------DVYGGAVGLTSCCLYGGAPYHAQEF 232
RA L+++PTREL QV +D D G L+ +YGG PY Q
Sbjct: 86 TPRA---LIVVPTRELCLQVTDDLTLAAKYLSADKDDAGRDRALSVVPIYGGRPYEPQIE 142
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L+ G DVV+GTPGR+ D ++ ++ L L VLDEADEML +GF+ D+E IL ++
Sbjct: 143 ALRAGADVVVGTPGRLLDLSQQNHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIP-- 200
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
Q++LFSAT+P + ++ F+ + T V++ V + + ++
Sbjct: 201 TDRQSMLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQY-VYRAHALDKVEL 259
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408
+ +++ G T+IFT TK +A ++AD L A+HGD+ Q+ RE L FR+G
Sbjct: 260 VSRVLQAEGRGA-TMIFTRTKRTAQKVADELAERGFAVGAVHGDLGQAAREKALKAFRTG 318
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD---- 464
LVAT+VAARG+DI+D+ +I + P D +AY+HR GRTGRAG TG+AV L D
Sbjct: 319 DIDVLVATDVAARGIDIDDITHVINYQIPEDEQAYVHRIGRTGRAGKTGIAVTLVDWDEL 378
Query: 465 PRKSSVSK 472
PR S + K
Sbjct: 379 PRWSLIDK 386
>gi|383791316|ref|YP_005475890.1| DNA/RNA helicase [Spirochaeta africana DSM 8902]
gi|383107850|gb|AFG38183.1| DNA/RNA helicase, superfamily II [Spirochaeta africana DSM 8902]
Length = 485
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 137/367 (37%), Positives = 209/367 (56%), Gaps = 32/367 (8%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ +K +G + PIQA + +++ GSD++G A+TG GKT AFVLP+L+ L P +
Sbjct: 17 DAVKRQGYTTPTPIQAQSIPVLMHGSDMLGTAQTGTGKTAAFVLPLLDRLIKNPRQPETS 76
Query: 182 TGYGRAPS----------------------VLVLLPTRELAKQVHEDFDVYGGAVGLTSC 219
R P+ L+L PTRELA Q+ + YG GL
Sbjct: 77 ANPAREPAHNRNGRNSRDSRRRPVKPARPEALILAPTRELAIQIGDSLQKYGSGSGLKHT 136
Query: 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV 279
+YGGAP +Q KL+ D++ TPGR+ D + G IDL+ ++ +LDEAD ML MGF+
Sbjct: 137 VIYGGAPKPSQAAKLRNNPDILAATPGRLMDFVGEGLIDLTGIRVLILDEADRMLDMGFI 196
Query: 280 EDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRH 339
++ I ED + QT+LFSAT+P ++ ++ + L + ++ + +++ +
Sbjct: 197 PEMRKIAAMAEDRD--QTVLFSATMPREIESLAQELLTNPERVA--IAPQEVTVD-RITQ 251
Query: 340 IVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQ 395
VL +++++P +IR ++ R IIFT TK A+++A LL A A+HGD Q
Sbjct: 252 TVLHLDREDKTKLLPALIRDHNM-FRVIIFTRTKHRATRVAKLLSKAEIPADAIHGDRTQ 310
Query: 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN 455
QR+ L GFR GK LVAT+VA+RG+D++DV +I E P + E+Y+HR GRTGRAG
Sbjct: 311 GQRQRALEGFRRGKIQALVATDVASRGIDVDDVSHVINFEIPNEAESYVHRIGRTGRAGT 370
Query: 456 TGVAVML 462
G+A+ L
Sbjct: 371 EGIAIAL 377
>gi|424851485|ref|ZP_18275882.1| ATP-dependent RNA helicase, partial [Rhodococcus opacus PD630]
gi|356666150|gb|EHI46221.1| ATP-dependent RNA helicase, partial [Rhodococcus opacus PD630]
Length = 466
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 152/400 (38%), Positives = 221/400 (55%), Gaps = 29/400 (7%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G ES PIQA T +L G+D+VG A+TG GKT AF +PIL SK
Sbjct: 26 LSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPIL----------SKIDL 75
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
++P LVL PTRELA QV E F Y + GL +YGG Y Q L++G VV+
Sbjct: 76 TQKSPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSGLRRGAHVVV 135
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+E+G +DLS L + VLDEADEML+MGF EDVE IL + +V LFSA
Sbjct: 136 GTPGRVIDHLEKGTLDLSKLSYLVLDEADEMLKMGFQEDVERILADTPEYKQVA--LFSA 193
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P ++ IS +++ +++ K ++N+ + + + + ++
Sbjct: 194 TMPGAIRKISKQYMHD---PVEITMKSKTSTASNISQRYVQVAHQRKLDALTRVLEVEDF 250
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
IIF TK++ LA+ L A A++GDI Q+QRE T+ +SG LVAT+V
Sbjct: 251 EA-MIIFVRTKQATEDLAERLRSRGFSASAINGDIVQAQRERTIGQLKSGALDILVATDV 309
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERES 477
AARGLD++ + ++ + P D E+Y+HR GRTGRAG G A++ PR+ + K IE+ +
Sbjct: 310 AARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGEALLFVAPRERHLLKAIEKAT 369
Query: 478 GVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKS 517
+ P D+ A+ +++ DS+ + S
Sbjct: 370 RQPLAEMQLPSVDDV-------NAQRVSKFGDSITESLTS 402
>gi|62261419|gb|AAX77988.1| unknown protein [synthetic construct]
Length = 604
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 149/375 (39%), Positives = 215/375 (57%), Gaps = 22/375 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQ +L G D++G+A+TG GKT AF LP L N AS+ RA
Sbjct: 52 GYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALP----LINNMDLASRD----RA 103
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F+ + V L C+YGG Y +Q LK+G+ VV+GT G
Sbjct: 104 PQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVKVVVGTTG 163
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHIE+G + L +L+ VLDEADEMLRMGF++DV+ +L V + + Q LLFSAT+P+
Sbjct: 164 RVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHV--SEQCQRLLFSATIPT 221
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ I ++L++ K + K K + V + + + ++ + G
Sbjct: 222 DIADIIEEYLRNPCK---IQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG-V 277
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF +TK S ++AD L A++GD+QQSQRE + FRS K LVAT+V ARG
Sbjct: 278 IIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARG 337
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS--VSKIERESGVK 480
+D+ + +I + P D + Y+HR GRTGRAG G ++ L P K + +ER +G
Sbjct: 338 IDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLV-PLKEMRFLRTLERFTGSP 396
Query: 481 FEHISAPQPADIAKA 495
+ + P ++A++
Sbjct: 397 MQEVFMPSAKELAQS 411
>gi|262201927|ref|YP_003273135.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
gi|262085274|gb|ACY21242.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
43247]
Length = 597
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 152/393 (38%), Positives = 222/393 (56%), Gaps = 17/393 (4%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+R + G E+ PIQA T ++ G D+VG A+TG GKT AF +PIL L A
Sbjct: 28 VRAAVSDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAIPILSRLEG----AG 83
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGI 238
+G R P LVL PTRELA QV E F Y + + +YGG Y Q L++G
Sbjct: 84 DGSGP-RKPQALVLAPTRELALQVAEAFGRYSAHMPEVRVLPIYGGQSYGVQLAGLRRGA 142
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
V++GTPGR+ DH++RG +D+S L+F VLDEADEML MGF EDVE IL + D +V
Sbjct: 143 QVIVGTPGRVIDHLDRGTLDISELRFLVLDEADEMLTMGFAEDVERILAETPDDKQVA-- 200
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+PS ++ ++ ++L +D + I + K + N+ L S + + +
Sbjct: 201 LFSATMPSAIRRLAQRYL-NDPQEITV--KSKTATAQNITQRYLQVSHQRKLDALTRFLE 257
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ I+F TK++ +LA+ L A A++GD+ Q+QRE T+ +SG LV
Sbjct: 258 VETFDA-MIVFVRTKQATEELAEKLRSRGFSAVAINGDMAQAQRERTINQLKSGGIDILV 316
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-I 473
AT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG G A++ PR+ + + I
Sbjct: 317 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGNALLFVSPRERHLLRSI 376
Query: 474 ERESGVKFEHISAPQPADIAKAAGVEAAETITQ 506
ER + I P D+ A++IT+
Sbjct: 377 ERATRSTLTEIGLPSVEDVNAQRVARFADSITE 409
>gi|56708511|ref|YP_170407.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670982|ref|YP_667539.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis FSC198]
gi|254371138|ref|ZP_04987140.1| hypothetical protein FTBG_00898 [Francisella tularensis subsp.
tularensis FSC033]
gi|254875360|ref|ZP_05248070.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
tularensis MA00-2987]
gi|379717740|ref|YP_005306076.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis TIGB03]
gi|379726344|ref|YP_005318530.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis TI0902]
gi|385795189|ref|YP_005831595.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis NE061598]
gi|421756125|ref|ZP_16193052.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis 80700075]
gi|56605003|emb|CAG46104.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110321315|emb|CAL09487.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis FSC198]
gi|151569378|gb|EDN35032.1| hypothetical protein FTBG_00898 [Francisella tularensis subsp.
tularensis FSC033]
gi|254841359|gb|EET19795.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282159724|gb|ADA79115.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis NE061598]
gi|377827793|gb|AFB81041.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis TI0902]
gi|377829417|gb|AFB79496.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis TIGB03]
gi|409085703|gb|EKM85836.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis 80700075]
Length = 569
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 149/375 (39%), Positives = 215/375 (57%), Gaps = 22/375 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQ +L G D++G+A+TG GKT AF LP L N AS+ RA
Sbjct: 26 GYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALP----LINNMDLASRD----RA 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F+ + V L C+YGG Y +Q LK+G+ VV+GT G
Sbjct: 78 PQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVKVVVGTTG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHIE+G + L +L+ VLDEADEMLRMGF++DV+ +L V + + Q LLFSAT+P+
Sbjct: 138 RVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHV--SEQCQRLLFSATIPT 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ I ++L++ K + K K + V + + + ++ + G
Sbjct: 196 DIADIIEEYLRNPCK---IQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG-V 251
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF +TK S ++AD L A++GD+QQSQRE + FRS K LVAT+V ARG
Sbjct: 252 IIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS--VSKIERESGVK 480
+D+ + +I + P D + Y+HR GRTGRAG G ++ L P K + +ER +G
Sbjct: 312 IDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLV-PLKEMRFLRTLERFTGSP 370
Query: 481 FEHISAPQPADIAKA 495
+ + P ++A++
Sbjct: 371 MQEVFMPSAKELAQS 385
>gi|78042906|ref|YP_359101.1| DEAD/DEAH box helicase [Carboxydothermus hydrogenoformans Z-2901]
gi|77995021|gb|ABB13920.1| ATP-dependent RNA helicase, DEAD box family [Carboxydothermus
hydrogenoformans Z-2901]
Length = 430
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 153/404 (37%), Positives = 228/404 (56%), Gaps = 26/404 (6%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
PL + + G E PIQ ++L+G +LVG+A TG GKT A++LP+L+ + G
Sbjct: 12 PLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRIQRG---- 67
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
+ VL++ PTRELA QV ++ G + + + +YGG Q L++G+
Sbjct: 68 -------KKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGV 120
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
+V++GTPGRI DHI R + +K +LDEADEML MGF++D+E IL + N+ QTL
Sbjct: 121 EVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTL--TNRQQTL 178
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSATLP+ +K I KFL KT+ LVG EK + + LP ++ I ++
Sbjct: 179 LFSATLPAPIKTIIKKFL-GGYKTVKLVGREKTVPAIRQVYYELP-----ETEKIEGLVS 232
Query: 359 CYSS--GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMT 412
+S + I+F TK+ ++ + L A+ LHGD+ Q +R T+ F++GK
Sbjct: 233 ILNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTEL 292
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
LVAT+VAARGLDI DV +I + P++ E+YIHR GRTGRAG G A+ L + R+ + K
Sbjct: 293 LVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLK 352
Query: 473 -IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAF 515
IE + + P+P D+ +A + A+ I +PA
Sbjct: 353 AIEEAINKRLKREILPEPVDLEEARFKKIAKKILDTITKGVPAL 396
>gi|227505531|ref|ZP_03935580.1| ATP-dependent RNA helicase [Corynebacterium striatum ATCC 6940]
gi|227197895|gb|EEI77943.1| ATP-dependent RNA helicase [Corynebacterium striatum ATCC 6940]
Length = 442
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 147/370 (39%), Positives = 218/370 (58%), Gaps = 13/370 (3%)
Query: 101 ERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKT 160
++ E+ P + ++ + + L S+GI F IQ +T + L G DL+G+ARTG GKT
Sbjct: 4 QQSETTQPPTFAALGVAAEIVDALASRGIVRTFAIQELTLPIALGGQDLIGQARTGMGKT 63
Query: 161 LAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC 220
L F +P+L+ + + A + G P L+++PTRELA QV ED + + L
Sbjct: 64 LGFGVPVLDRVFD---DADIEELDG-TPRALIVVPTRELAVQVGEDLTLASQNLPLRLAT 119
Query: 221 LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVE 280
+YGG PY Q L+KG+DV++GTPGR+ D ++G++ L + VLDEADEML +GF+
Sbjct: 120 IYGGRPYEEQIKLLEKGVDVIVGTPGRLLDLAQQGHLQLDHVAILVLDEADEMLDLGFLP 179
Query: 281 DVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340
D+E IL ++ NK QT+LFSAT+P + ++ F+ G+E + + R +
Sbjct: 180 DIEKIL-ELLHGNKHQTMLFSATMPGPILTLARTFMNRPIHIRAESGDEN-QTHESTRKV 237
Query: 341 VLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP--GAR--ALHGDIQQS 396
+ +I ++ G+TIIF TK SA+++AD L G R A+HGD+ Q+
Sbjct: 238 TFQAHRMDKLAIISRALQAKGR-GKTIIFARTKRSAAEVADELARRGFRVGAVHGDLGQA 296
Query: 397 QREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNT 456
RE +L FR GK LVAT+VAARG+D++DV +I + P D ++HR GRTGRAG+T
Sbjct: 297 AREKSLNAFREGKVEILVATDVAARGIDVDDVTHVINYQVPDDPMTFVHRIGRTGRAGHT 356
Query: 457 GVAVML--YD 464
G AV L YD
Sbjct: 357 GTAVTLVGYD 366
>gi|50955710|ref|YP_062998.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50952192|gb|AAT89893.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 399
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 149/351 (42%), Positives = 206/351 (58%), Gaps = 16/351 (4%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G E+ FPIQA T ++ G D++GR RTG GKT+AF P++E L ++ K G
Sbjct: 19 LAELGAETPFPIQAATAPEIVAGRDVLGRGRTGSGKTIAFGAPMVERLMRLWAESGKSGG 78
Query: 184 ---YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDV 240
GRAP L+L PTRELA Q+ +VGL + +YGG P Q L++G+D+
Sbjct: 79 KRQTGRAPRALILAPTRELALQIDRTVQPIARSVGLFTTQIYGGVPQGRQVGALQRGVDI 138
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
VIGTPGRI+D +E+G +DLS + VLDEAD M +GF+E V+ IL + D Q LLF
Sbjct: 139 VIGTPGRIEDLVEQGRLDLSQVVISVLDEADHMCDIGFLEPVQRILRETVDGG--QKLLF 196
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SATL S V + +FL D ++ G + + S+ + H VL + +I +
Sbjct: 197 SATLDSGVAQLVDEFL-VDPSVHEVAGED--QDSSAIDHRVLVVEHREKGAIIEQL---A 250
Query: 361 SSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
G+T+IF T+ A LAD L A +LHGD+ QS+R LA SG+ LVAT
Sbjct: 251 DRDGKTLIFARTRAFAEMLADNLEDAGIPAVSLHGDLNQSRRTRNLAQLTSGRVSVLVAT 310
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK 467
+VAARG+ ++D+ L+IQ + P + + Y+HRSGRTGRAG G V L PR+
Sbjct: 311 DVAARGIHVDDIDLVIQADAPDEYKTYLHRSGRTGRAGKRGTVVTLI-PRQ 360
>gi|452912129|ref|ZP_21960782.1| putative ATP-dependent RNA helicase [Kocuria palustris PEL]
gi|452832711|gb|EME35539.1| putative ATP-dependent RNA helicase [Kocuria palustris PEL]
Length = 655
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 151/414 (36%), Positives = 228/414 (55%), Gaps = 22/414 (5%)
Query: 55 ESEIEEEEERSETSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRF 114
++E E E+ ET+ + GE ++ E + +VEP+A VE + + F
Sbjct: 28 QTESPETEQSPETAPDQGE-----AQLEAIAEDSVEVEPQAPVETR---------TFADF 73
Query: 115 RISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNG 174
+ + E L GI FPIQ+MT + L G D++G+A+TG GKTL F +P ++++
Sbjct: 74 GVREDIAEALAEAGIVHPFPIQSMTLPIALSGQDIIGQAKTGTGKTLGFGIPAVQNVVGR 133
Query: 175 PTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ AP L+++PTRELA QV D + +YGG Y Q L
Sbjct: 134 DDDGWDRLERPGAPQALIVVPTRELAVQVGSDLSIAAKTRNARVLTIYGGRAYEPQIEAL 193
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
+KG++VV+GTPGR+ D + ++DLS +K VLDEADEML +GF+ DVE +L V
Sbjct: 194 EKGVEVVVGTPGRLIDLNRQHHLDLSQVKTVVLDEADEMLDLGFLPDVEKLLSAV--PRV 251
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
T+LFSAT+P V ++ +++ S I ++ ++R +V + + +++
Sbjct: 252 PHTMLFSATMPGPVVAMARRYM-SKPMHIRAAAPDEGSTKADIRQVVYRAHNLDKPEMLG 310
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410
I++ GR IIF TK +A+++AD L A LHGD+ Q RE L FRS K
Sbjct: 311 RILQADGR-GRCIIFIRTKRTAAKVADELIERGFAAAPLHGDLGQGAREQALRAFRSSKV 369
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
LVAT+VAARG+D++DV +I + P D + Y+HR+GRTGRAG G A+ D
Sbjct: 370 DILVATDVAARGIDVDDVTHVINYQCPEDEKTYLHRTGRTGRAGRKGTAITFVD 423
>gi|153955940|ref|YP_001396705.1| RNA helicase [Clostridium kluyveri DSM 555]
gi|219856282|ref|YP_002473404.1| hypothetical protein CKR_2939 [Clostridium kluyveri NBRC 12016]
gi|146348798|gb|EDK35334.1| Predicted RNA helicase [Clostridium kluyveri DSM 555]
gi|219570006|dbj|BAH07990.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 524
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 162/451 (35%), Positives = 243/451 (53%), Gaps = 25/451 (5%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E + + G E IQA + ++L+G+D++G+A+TG GKTLAF P+L SK
Sbjct: 17 EAIDNMGFEEPSQIQAESIPVILEGNDIIGQAQTGTGKTLAFGAPML----------SKI 66
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
T + S L+L PTRELA QV+++ + + +YGG P Q LK+GI++V
Sbjct: 67 TPKNKHISALILTPTRELAIQVNDELSRIAKFMKILLLPIYGGQPIERQIKSLKRGINIV 126
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
+GTPGRI DH+ R +DLS+++F +DEADEML MGF+ED+E I+ K + N+ QTLLFS
Sbjct: 127 VGTPGRILDHLHRKTLDLSNIEFLTIDEADEMLDMGFIEDIEEII-KASNPNR-QTLLFS 184
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
AT+P VK +++K++ S+ K I + N T + R + + I+
Sbjct: 185 ATMPDQVKRLASKYMSSNTKYITIAKNTLTVEKT--KQYYYEIKHKDRFESLCRILDV-D 241
Query: 362 SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
IIF +TK +L + + +HGD+ Q+QR TL F+ G LVAT+
Sbjct: 242 EPSSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGSLDFLVATD 301
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERE 476
VAARG+D+ +V +I + P+D E+Y+HR GRTGRA G+A L PR+ + K IE+
Sbjct: 302 VAARGIDVENVSHVINYDLPQDTESYVHRIGRTGRANKEGIAYSLVTPREYILLKQIEKF 361
Query: 477 SGVKFEHISAPQPADIAKAAGVEAAETITQV-SDSVIPAFKSAAEELLNNSGLSAAELLA 535
+ K + P +I +A E I +V S++ F A EL L +A
Sbjct: 362 TKSKIKRKDIPTIDEIFEAKYKNIEEKIKKVISENNYKNFIPIATELDEEYNLVD---VA 418
Query: 536 KALAKAVVSAFL-FSSSSNSLSLTSGTMCFF 565
+L K + L F NS+ + + F
Sbjct: 419 ASLMKIIFDKELSFDYKENSIGIEDNNVRLF 449
>gi|296394094|ref|YP_003658978.1| DEAD/DEAH box helicase [Segniliparus rotundus DSM 44985]
gi|296181241|gb|ADG98147.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM
44985]
Length = 548
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 149/373 (39%), Positives = 206/373 (55%), Gaps = 26/373 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +L+G D+VG A TG GKT AF LP+L ++ K R
Sbjct: 28 GYETPSPIQAKTIPALLNGQDVVGLAATGTGKTAAFALPVL-------SRIDPKL---RR 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC-CLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV E F Y + S C+YGG Y Q L +G V++GTPG
Sbjct: 78 PQALVLAPTRELALQVAEAFGRYASKLPQVSVVCVYGGGSYPVQLQALARGSQVIVGTPG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+ERG + L LKF VLDEADEML+MGF EDVE +L + Q LFSAT+P
Sbjct: 138 RVVDHLERGTLKLGDLKFLVLDEADEMLKMGFQEDVERVLASA--SQDKQVALFSATMPG 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC--YSSGG 364
++ IS +L+ +++ S N+ + + ++ I+ +S+
Sbjct: 196 AIRKISKTYLRD---PVEVTVKAATTTSENIEQRYTLVAHHRKLDLLTRILEVEQFSA-- 250
Query: 365 RTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
I+F TK++ +A+ L AR L+GDI Q+ RE T++ R+GK LVAT+VAA
Sbjct: 251 -MIVFVRTKQATEDIAERLRARGFAARPLNGDIAQAARERTVSALRAGKIDILVATDVAA 309
Query: 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGV 479
RGLD+ + + + P D E+Y+HR GRTGRAG GV+ + PR +S + IER +
Sbjct: 310 RGLDVERITHVFNYDVPHDTESYVHRIGRTGRAGRAGVSYLFVTPRERSMIGAIERATRQ 369
Query: 480 KFEHISAPQPADI 492
P AD+
Sbjct: 370 ALTEAPLPTVADV 382
>gi|296118823|ref|ZP_06837399.1| ATP-dependent RNA helicase DeaD [Corynebacterium ammoniagenes DSM
20306]
gi|295968312|gb|EFG81561.1| ATP-dependent RNA helicase DeaD [Corynebacterium ammoniagenes DSM
20306]
Length = 407
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 140/351 (39%), Positives = 209/351 (59%), Gaps = 17/351 (4%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ L ++GI F IQ +T + L+G+DL+G+ARTG GKT F +P+L+ + + A+
Sbjct: 9 DALAARGITHTFAIQELTLPIALNGTDLIGQARTGMGKTYGFGVPLLDRVFD----AADV 64
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
+P LV++PTRELA QV D + + + + GG + AQ+ L+ G+DVV
Sbjct: 65 PELDGSPRALVVVPTRELAVQVANDLSIAAAQIPVRIATILGGRDFEAQQEALRAGVDVV 124
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
+GTPGRI D +R N+ L + VLDEADEML +GF+ DVE IL ++D+ QT+LFS
Sbjct: 125 VGTPGRILDLYQRKNLRLDKVSVLVLDEADEMLDLGFLPDVEKILAALKDSPH-QTMLFS 183
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVLPCSSSARSQVIPDIIRC 359
AT+P + ++ F+ + + + + + A T+ + I+ + V+ I++
Sbjct: 184 ATMPGAIVRLARTFM---NRPVHIRADAESSAPTHASTQQIIFQAHRMDKLPVLSRILQV 240
Query: 360 YSSGGRTIIFTETKESASQ----LADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
GRT++FT TK +A+Q LADL A+HGD+ Q RE LAGFR G LVA
Sbjct: 241 PER-GRTLVFTRTKRTAAQVAQDLADLGFTVGAVHGDLNQQAREQALAGFRDGTVPILVA 299
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML--YD 464
T+VA+RG+D+ DV +I + P D Y+HR GRTGRAG++G A+ L YD
Sbjct: 300 TDVASRGIDVEDVTHVINYQVPDDAMTYVHRIGRTGRAGHSGTAITLVGYD 350
>gi|51892785|ref|YP_075476.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
gi|51856474|dbj|BAD40632.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
Length = 526
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 158/419 (37%), Positives = 229/419 (54%), Gaps = 25/419 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G E PIQA +L G D++G+A+TG GKT AF +PI+E L G
Sbjct: 21 LDDMGFEEPSPIQAQAIPALLQGKDVIGQAQTGTGKTAAFGVPIVERLVPG--------- 71
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
RA LVL PTRELA QV E+ G + + +YGG Q L+ G+DVVIG
Sbjct: 72 -QRAVQALVLTPTRELAIQVAEEITKIGRHARVKTIAIYGGQSIERQIRSLRFGVDVVIG 130
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGRI DH+ R +DLS ++ VLDEADEML MGF+ED+E IL + QTLLFSAT
Sbjct: 131 TPGRILDHLGRSTLDLSQVRMVVLDEADEMLDMGFIEDIEKILQNT--PAERQTLLFSAT 188
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P ++ ++ ++++ D TI + + + S +++ + I+ +
Sbjct: 189 MPPEIRRLAGRYMR-DPITISV--TPQQLTVPQIDQYFCEVRPSFKTEALTRILDI-ENV 244
Query: 364 GRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
R I F TK+ +L + L A +HGD+ Q+QR ++ F+ G LVAT+VA
Sbjct: 245 ERGICFCRTKKGVDELVEALQARGYQAEGIHGDMNQAQRNRVMSRFKEGYIELLVATDVA 304
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK-SSVSKIERESG 478
ARGLDI+DV + + P+D E+Y+HR GRTGRAG TG A+ L PR+ + IER
Sbjct: 305 ARGLDISDVTHVFNYDIPQDPESYVHRIGRTGRAGRTGTAITLVTPREFPQLRLIERVIK 364
Query: 479 VKFEHISAPQPADIAKAAGVEAAETITQV-SDSVIPAFKSAAEELL---NNSGLSAAEL 533
+ + P +D+A+ + E + ++ + + F+ AE+LL + S L AA L
Sbjct: 365 ARLQRRPVPTLSDVAEKQREQLKERLIKILEEDKLGEFRELAEDLLAEYDPSDLVAAAL 423
>gi|433458404|ref|ZP_20416331.1| DNA/RNA helicase [Arthrobacter crystallopoietes BAB-32]
gi|432193378|gb|ELK50115.1| DNA/RNA helicase [Arthrobacter crystallopoietes BAB-32]
Length = 559
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 144/387 (37%), Positives = 217/387 (56%), Gaps = 11/387 (2%)
Query: 94 EAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRA 153
EA + ER + F + + L GI FPIQAMT + L G D++G+A
Sbjct: 26 EATLASDERPHELPQQTFADFDVRADIVRSLFDAGITHPFPIQAMTLPVALSGHDIIGQA 85
Query: 154 RTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGA 213
+TG GKTL F +P L+ + + K AP LV++PTRELA QV +D
Sbjct: 86 KTGTGKTLGFGIPALQRVIGPSDEGFDKLPAPGAPQALVVVPTRELAVQVAQDLKTASKH 145
Query: 214 VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273
+ +YGG Y Q +L KG++VV+GTPGR+ D + +++L +++ VLDEADEM
Sbjct: 146 RDVRVSTIYGGRAYEPQIEELGKGVEVVVGTPGRLIDLHRQRHLNLKNVRIVVLDEADEM 205
Query: 274 LRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKA 333
L +GF+ DVE +LG QT+LFSAT+P V ++ +++ +++
Sbjct: 206 LDLGFLPDVETLLGATPAVR--QTMLFSATMPGPVVAMARRYMTQPTHIRAADPDDEGMT 263
Query: 334 STNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARAL 389
++R ++ + + +V+ I++ GRTIIFT+TK +A++L++ L A A+
Sbjct: 264 KKDIRQVIYRAHALDKDEVVARILQAEGR-GRTIIFTKTKRTAAKLSEELVDRGFAAAAI 322
Query: 390 HGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 449
HGD+ Q RE L FR+ K LVAT+VAARG+D++DV +I + P D + Y+HR GR
Sbjct: 323 HGDLGQGAREQALRAFRNEKVDVLVATDVAARGIDVDDVTHVINFQCPEDEKTYLHRVGR 382
Query: 450 TGRAGNTGVAVMLYD----PRKSSVSK 472
TGRAGN G A+ D PR ++K
Sbjct: 383 TGRAGNKGTAITFVDWDDVPRWGLINK 409
>gi|359419518|ref|ZP_09211469.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia araii NBRC
100433]
gi|358244479|dbj|GAB09538.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia araii NBRC
100433]
Length = 569
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 148/393 (37%), Positives = 214/393 (54%), Gaps = 22/393 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+R L G E+ PIQA T ++ G D+VG A+TG GKT AF +PIL L
Sbjct: 18 VRRALDDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAIPILSRLDTS----- 72
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGI 238
R P LVL PTRELA QV E F Y + L +YGG Y Q L++G
Sbjct: 73 -----ARKPQALVLAPTRELALQVAEAFGRYAAHIPELRVLPIYGGQSYGVQLSGLRRGA 127
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
V++GTPGR+ DH+++G +D+S L+F VLDEADEML MGF EDVE IL D+ +V
Sbjct: 128 QVIVGTPGRVIDHLDKGTLDISELEFLVLDEADEMLTMGFAEDVERILADTPDSKQVA-- 185
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P + ++ K+L ++ K + N+ L S + + ++
Sbjct: 186 LFSATMPKAIGRLAQKYLHD---PAEVTVKSKTSTAQNITQKYLQVSHQRKLDALTRVLE 242
Query: 359 CYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G I+F TK + +LA+ L A A++GD+ Q+QRE T+ + G LV
Sbjct: 243 VEQFDG-MIVFVRTKSATEELAEKLRARGLSAMAINGDMVQAQRERTINQLKEGSLDILV 301
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-I 473
AT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + + I
Sbjct: 302 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLRAI 361
Query: 474 ERESGVKFEHISAPQPADIAKAAGVEAAETITQ 506
E+ + I P D+ A++IT+
Sbjct: 362 EKATRQSLTEIDLPTAEDVNAQRVARFADSITE 394
>gi|426364976|ref|XP_004049567.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Gorilla gorilla
gorilla]
Length = 633
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 150/403 (37%), Positives = 215/403 (53%), Gaps = 47/403 (11%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSET--SSELGEPV 75
M K+ D E EA L E S KK+ +K + K R + +E+ E E + +L P
Sbjct: 1 MPGKLLWGDIMELEAPLEESESQKKERQKSDRRKSRHHYDSDEKSETRENGVTDDLDAPK 60
Query: 76 -------------------NLKSEKEKKKKKKAKVEPEAGVEEQER--------GESEHP 108
L E K K + K P ++E E+ S H
Sbjct: 61 AKKSKMKEKLNGDTEEGFNRLSDEFSKSHKSRRKDLPNGDIDEYEKKSKRVSSLDTSTHK 120
Query: 109 NAVSRFR------ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLA 162
++ ++ S+ ++ +G+ LFPIQ TF V +G DL+ +ARTG GKT +
Sbjct: 121 SSDNKLEEVTAALRSILIKSHFTGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFS 180
Query: 163 FVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCL 221
F +P++E L K R+P VLVL PTRELA QV +DF D+ L+ C
Sbjct: 181 FAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI---TRKLSVACF 233
Query: 222 YGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVED 281
YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E
Sbjct: 234 YGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQ 293
Query: 282 VELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR 338
VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG KA+T V
Sbjct: 294 VEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVE 353
Query: 339 HIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA 380
H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 354 HLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMA 396
>gi|296270955|ref|YP_003653587.1| DEAD/DEAH box helicase [Thermobispora bispora DSM 43833]
gi|296093742|gb|ADG89694.1| DEAD/DEAH box helicase domain protein [Thermobispora bispora DSM
43833]
Length = 618
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 147/349 (42%), Positives = 207/349 (59%), Gaps = 18/349 (5%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ L+++GI + FPIQ M + L G D++G+ARTG GKT AF +P L+ L P K KK
Sbjct: 21 DALETEGIVTPFPIQEMALPLALSGQDIIGQARTGTGKTYAFGIPTLQ-LIGKPRKNRKK 79
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
P L+L PTRELA QV ED + G +G +YGG Y Q LK G+DVV
Sbjct: 80 ------PRGLILAPTRELALQVTEDLVLAAGKLGTRITTVYGGRAYEPQIEALKNGVDVV 133
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
+GTPGR+ D + + ++DLS + VLDEAD ML +GF+ D+E I+ + + K QT+LFS
Sbjct: 134 VGTPGRLLDLVNQKHLDLSQIAILVLDEADRMLDLGFLPDIERIIKLLPE--KRQTMLFS 191
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
AT+P + +S ++L ++ T +++A T R + R I + R
Sbjct: 192 ATMPGEIVALSRRYL--NRPTHIRAEIAEIEAETKPRTTQF-VYRTHRMDKIEILARVLQ 248
Query: 362 SGGRTI--IFTETKES----ASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
S T+ +F ETK + A+QL D A+HGD+ QSQRE L FR+GK LVA
Sbjct: 249 STELTLAMVFCETKRACDMVANQLRDRGFAVAAVHGDLSQSQREQALRAFRNGKINVLVA 308
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
T+VAARG+D++DV +I + P+D + YIHR GRTGRAG +GVA+ +
Sbjct: 309 TDVAARGIDVDDVTHVINYDLPQDEKTYIHRIGRTGRAGRSGVAITFVE 357
>gi|192361806|ref|YP_001982445.1| ATP-dependent RNA helicase DeaD [Cellvibrio japonicus Ueda107]
gi|190687971|gb|ACE85649.1| ATP-dependent RNA helicase DeaD [Cellvibrio japonicus Ueda107]
Length = 625
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 159/435 (36%), Positives = 237/435 (54%), Gaps = 25/435 (5%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ + +++ G E PIQA ++LDG D++G A+TG GKT AF LP+L L
Sbjct: 36 LSAPVLKAIQAVGYEVPSPIQAAAIPILLDGGDILGMAQTGTGKTAAFALPLLSKLDLSQ 95
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
+ P +LVL PTRELA QV E F Y + G +YGG +Q +L
Sbjct: 96 NE----------PQILVLAPTRELAIQVAEAFQKYAADMPGFHVLPIYGGQDMTSQLRQL 145
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
K+G+ VV+GTPGR+ DH+ RG+++L++LK VLDEADEMLRMGF++DVE IL +
Sbjct: 146 KRGVHVVVGTPGRVMDHLRRGSLNLNNLKSLVLDEADEMLRMGFIDDVEWILEHTPETR- 204
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ ++ +L+ D K I + + + N+ + S + + +
Sbjct: 205 -QTALFSATMPREIRKVADNYLR-DAKEIKIASTQ--QTGDNIEQVYWMVSGTNKLDALT 260
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKF 410
I+ G IIF TK + +LA+ L A L+GD+ Q RE T+ ++ K
Sbjct: 261 RILEVEPFDG-MIIFVRTKTATVELAEKLEARGYSAAPLNGDMNQQLRERTIERLKTSKL 319
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSS 469
++AT+VAARG+D+ V ++ + P D EAY+HR GRTGRAG +G A++ PR K
Sbjct: 320 DIVIATDVAARGIDVERVSHVVNYDIPYDSEAYVHRIGRTGRAGRSGKAILFVAPREKRL 379
Query: 470 VSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQV--SDSVIPAFKSAAEELLNNSG 527
+ IE+ + + P A + K + + IT V S + F E +
Sbjct: 380 LYTIEKATRKPITLMELPSGATVTKHRIDQFTQQITDVLTEQSDLSFFNDLLAEYGRTND 439
Query: 528 LSAAELLAKALAKAV 542
+S E +A ALA V
Sbjct: 440 VS-PEQIASALAYLV 453
>gi|221633115|ref|YP_002522340.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
gi|221156880|gb|ACM06007.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
Length = 534
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 148/393 (37%), Positives = 215/393 (54%), Gaps = 21/393 (5%)
Query: 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLP 166
+P+ + +S L L+ G E P+Q ++L G D + +A TG GKT AF LP
Sbjct: 10 NPSGFAALGLSPALLAALRDVGFEQPMPVQTEAIPVLLSGRDAIVQAHTGTGKTAAFALP 69
Query: 167 ILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226
IL+ L YG P LVL PTRELA QV E G + LYGG P
Sbjct: 70 ILQGLVP----------YGHGPQALVLTPTRELAIQVAEAIHRLGRYLDARVLALYGGQP 119
Query: 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286
Q L+ +DV++GTPGRI DH+ R + L ++ +LDEADEML MGF+EDVE IL
Sbjct: 120 IERQLRALRHPVDVIVGTPGRIMDHLRRETLRLDQVRVVILDEADEMLDMGFIEDVEWIL 179
Query: 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346
V + QT LFSAT+P ++ ++ ++L++ + + + + ++ V ++
Sbjct: 180 EHV--PRERQTALFSATIPPRIRQLTQRYLRA---PVTIAIHPERVTVPSIAQTVYEVAA 234
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTL 402
A+ + + I+ Y + IIF TK A +LA L A A+HGD+ Q+ R+ +
Sbjct: 235 HAKLEALSRIL-DYEAPTSAIIFVRTKSGADELAHKLQSLGYAAEAIHGDLSQAMRDRAM 293
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
FR+G+ L+AT+VAARGLDI V +I + P D E+Y+HR GRTGRAG TG A+ L
Sbjct: 294 QRFRAGQVDLLIATDVAARGLDIPAVSHVINFDIPSDPESYVHRIGRTGRAGATGTAITL 353
Query: 463 YDPRKSSVSK-IERESGVKFEHISAPQPADIAK 494
+PR+ + + IER G + P +IA+
Sbjct: 354 IEPRERWLLRTIERAIGQRLIPKRIPTREEIAR 386
>gi|55733661|emb|CAH93507.1| hypothetical protein [Pongo abelii]
Length = 413
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 156/413 (37%), Positives = 216/413 (52%), Gaps = 57/413 (13%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSET--SSELGEPV 75
M K+ D E EA L E S KK+ +K + K R + +E+ E E + +L P
Sbjct: 1 MPGKLLWGDIMELEAPLEESESQKKERQKSDRRKSRHHYDSDEKSETRENGVTDDLDAPK 60
Query: 76 -------------------NLKSEKEKKKKKKAKVEPEAGVEEQER--------GESEHP 108
L E K K + K P ++E E+ S H
Sbjct: 61 AKKSKMKEKLNGDTEEGFNRLSDEFSKSHKSRRKDLPNGDIDEYEKKSKRVSSLDTSTHK 120
Query: 109 N----------------AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
+ A S F IS + LK +G+ LFPIQ TF V +G DL+ +
Sbjct: 121 SSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQ 180
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYG 211
ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF D+
Sbjct: 181 ARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI-- 234
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D
Sbjct: 235 -TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVD 293
Query: 272 EMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG
Sbjct: 294 QMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGK 353
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA 380
KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 354 MTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMA 406
>gi|260903903|ref|ZP_05912225.1| DEAD/DEAH box helicase domain-containing protein [Brevibacterium
linens BL2]
Length = 606
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 147/375 (39%), Positives = 216/375 (57%), Gaps = 25/375 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ ++++G E+ PIQA T +++G D++G A+TG GKT AF LP L L
Sbjct: 26 QAVQAQGYETPTPIQAETIPALVEGRDVIGLAQTGTGKTAAFALPALSDLAEA------- 78
Query: 182 TGYGRA---PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKG 237
GRA P LVL PTRELA QV E F Y + + +YGG Y Q LK+G
Sbjct: 79 ---GRANDGPFALVLTPTRELAIQVAEAFTSYATNLDDFSVLPIYGGQAYGPQLSGLKRG 135
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
VV+GTPGR+ DH+++G++ L SL+ +LDEADEML+MGF ED+E I + D+ +V
Sbjct: 136 AQVVVGTPGRVIDHLKKGSLKLGSLRHLILDEADEMLKMGFAEDIEEIFSQSGDSRQVA- 194
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P+ + ++ K+L + K ++ K + +N+R S + + I+
Sbjct: 195 -LFSATMPTSIHRLTGKYLNNPK---EVRVASKSQTGSNIRQRYHMVQHSHKLDALTRIL 250
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
G I+F TK++ +LA+ L A A++GDI Q RE T+ R+GK L
Sbjct: 251 EVEEYEG-IIMFVRTKQATEELAEKLRARGFKASAINGDIPQQARERTIDMLRNGKVDIL 309
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS-VSK 472
VAT+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG +G A++ PR+ +
Sbjct: 310 VATDVAARGLDVERITLVVNFDIPHDTESYVHRIGRTGRAGRSGEAILFVTPREQRLLGS 369
Query: 473 IERESGVKFEHISAP 487
IER + K E + P
Sbjct: 370 IERATKQKVEQLKMP 384
>gi|111023001|ref|YP_705973.1| cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
gi|397736421|ref|ZP_10503103.1| cold-shock DEAD box protein A [Rhodococcus sp. JVH1]
gi|110822531|gb|ABG97815.1| probable cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
gi|396927611|gb|EJI94838.1| cold-shock DEAD box protein A [Rhodococcus sp. JVH1]
Length = 586
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 152/400 (38%), Positives = 221/400 (55%), Gaps = 29/400 (7%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G ES PIQA T +L G+D+VG A+TG GKT AF +PIL SK
Sbjct: 26 LSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPIL----------SKIDL 75
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
++P LVL PTRELA QV E F Y + GL +YGG Y Q L++G VV+
Sbjct: 76 TQKSPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSGLRRGAHVVV 135
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+E+G +DLS L + VLDEADEML+MGF EDVE IL + +V LFSA
Sbjct: 136 GTPGRVIDHLEKGTLDLSKLSYLVLDEADEMLKMGFQEDVERILADTPEYKQVA--LFSA 193
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P ++ IS +++ +++ K ++N+ + + + + ++
Sbjct: 194 TMPGAIRKISKQYMHD---PVEITMKSKTSTASNISQRYVQVAHQRKLDALTRVLEVEDF 250
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
IIF TK++ LA+ L A A++GDI Q+QRE T+ +SG LVAT+V
Sbjct: 251 EA-MIIFVRTKQATEDLAEKLRSRGFSASAINGDIVQAQRERTIGQLKSGALDILVATDV 309
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERES 477
AARGLD++ + ++ + P D E+Y+HR GRTGRAG G A++ PR+ + K IE+ +
Sbjct: 310 AARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGEALLFVAPRERHLLKAIEKAT 369
Query: 478 GVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKS 517
+ P D+ A+ +++ DS+ + S
Sbjct: 370 RQPLAEMQLPSVDDV-------NAQRVSKFGDSITESLTS 402
>gi|127511465|ref|YP_001092662.1| DEAD/DEAH box helicase [Shewanella loihica PV-4]
gi|126636760|gb|ABO22403.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
Length = 599
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 156/433 (36%), Positives = 232/433 (53%), Gaps = 22/433 (5%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S PL L G E PIQA + D ++ G D++G+A+TG GKT AF LP+L ++ P
Sbjct: 13 LSEPLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALPLLNAID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
+ P +LVL PTRELA QV E F Y + GL +YGG H Q L
Sbjct: 71 NR--------NVPQILVLAPTRELAVQVAEAFGSYSKFMKGLHVLPIYGGQSMHQQLNAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH+ RG + L +L VLDEADEML+MGF++D+E IL +
Sbjct: 123 RRGPQIVVGTPGRVMDHMRRGTLKLETLNALVLDEADEMLKMGFIDDIEWILEHT--PQE 180
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
Q LFSAT+P +K ++ K+L++ I + + S R + + S + + +
Sbjct: 181 RQLALFSATMPEQIKRVANKYLQTPVH-ISIAASHTTVESIEQRFVQV--SQHNKLEALV 237
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410
++ ++ G IIF T+ S +LA+ L + LHGD+ Q RE + + GK
Sbjct: 238 RVLEVENTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKL 296
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 470
L+AT+VAARGLD+ + +I + P D EAY+HR GRTGRAG TG+A++ R+ +
Sbjct: 297 DILIATDVAARGLDVERIGHVINYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRM 356
Query: 471 SK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLS 529
+ IER + + ++ P P +A+ E ++ D+ F A L
Sbjct: 357 LRTIERATKSRISPMNVPSPETVAERRLSRLGEQVSNTIDNESLDFMHGAVAQLCQQLEV 416
Query: 530 AAELLAKALAKAV 542
E+LA AL V
Sbjct: 417 DTEVLAAALLNMV 429
>gi|452960046|gb|EME65376.1| cold-shock DEAD-box protein [Rhodococcus ruber BKS 20-38]
Length = 633
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 152/402 (37%), Positives = 220/402 (54%), Gaps = 29/402 (7%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ L G E+ PIQA T +L+G D+VG A+TG GKT AF +PIL + +
Sbjct: 24 QALSDVGYENPSPIQAATIPPLLEGRDVVGLAQTGTGKTAAFAVPILSRIDTTVKR---- 79
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDV 240
P L+L PTRELA QV E F Y + GL +YGG Y Q L++G V
Sbjct: 80 ------PQALILAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSGLRRGAQV 133
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
++GTPGR+ DH+ +G +D+S L+F VLDEADEML MGF EDVE IL ++ +V LF
Sbjct: 134 IVGTPGRVIDHLAKGTLDISELEFLVLDEADEMLTMGFQEDVERILADTPESKQVA--LF 191
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P ++ +S ++L +++ K S N+ + S + + I+
Sbjct: 192 SATMPGAIRRLSKQYLHD---PVEITVKSKTTTSANITQRWVLVSHQRKLDALTRILEVE 248
Query: 361 SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
IIF TK++ LA+ L A A++GDI Q+QRE T+ +SG LVAT
Sbjct: 249 QFEA-MIIFVRTKQATEDLAERLRARGFSASAINGDIVQAQRERTIGQLKSGALDILVAT 307
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IER 475
+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + K IER
Sbjct: 308 DVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGDALLFVAPRERHLLKAIER 367
Query: 476 ESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKS 517
+ I P D+ A+ + + +DS+ A S
Sbjct: 368 ATRQPLTEIQLPSVEDV-------NAQRVEKFNDSITEALAS 402
>gi|410615743|ref|ZP_11326756.1| ATP-dependent RNA helicase DeaD [Glaciecola psychrophila 170]
gi|410164699|dbj|GAC40645.1| ATP-dependent RNA helicase DeaD [Glaciecola psychrophila 170]
Length = 585
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 163/443 (36%), Positives = 242/443 (54%), Gaps = 54/443 (12%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L + L G E PIQA +++ G DL+G A+TG GKT AF LP+L ++ P S
Sbjct: 19 LLQALDKVGYEKPTPIQAECIPLIIGGHDLLGTAQTGTGKTAAFALPMLANID--PDDKS 76
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGI 238
+ +LVL PTRELA QV E F VY + + +YGG+ Y Q +LK+G
Sbjct: 77 TQ--------LLVLTPTRELAIQVAEAFQVYASFLKKINVLPIYGGSSYDNQIRQLKRGT 128
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
VV+GTPGR+ DHI++G + L LKF VLDEADEMLRMGF++DVE ILG + QT
Sbjct: 129 QVVVGTPGRVIDHIKKGTLKLDKLKFLVLDEADEMLRMGFIDDVEWILGHA--PKERQTA 186
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P ++ I+ ++L +D K++ + K+ ++ +R + + + + I+
Sbjct: 187 LFSATMPDAIRKITKRYL-NDPKSVKI--ESKVATASTIRQRYCQVAGHHKLEALTRILE 243
Query: 359 CYSSGGRTIIFTETKESASQLADLLPGARA-----LHGDIQQSQREVTLAGFRSGKFMTL 413
G IIF TK + +LA+ L AR L+GDI Q+ RE T+ + GK L
Sbjct: 244 VEVFDG-VIIFVRTKTATMELAEKL-SARGYAVEPLNGDIPQNSRERTVDRLKKGKIDIL 301
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSK 472
VAT+V ARGLD+ V +I + P D E+Y+HR GRTGRAG G A++ R K +
Sbjct: 302 VATDVVARGLDVERVSHVINFDVPYDTESYVHRIGRTGRAGREGDAILFISHREKRMLFS 361
Query: 473 IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGL---- 528
IER + + ++ P +I+Q++++ + FKS+ E + ++ +
Sbjct: 362 IERATRQTIDAMTIP---------------SISQLNETRLSRFKSSVIEAIGDASIETLI 406
Query: 529 -----------SAAELLAKALAK 540
+A E++ ALAK
Sbjct: 407 PIVESIQAETEAAPEVIMAALAK 429
>gi|323357599|ref|YP_004223995.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
StLB037]
gi|323273970|dbj|BAJ74115.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
StLB037]
Length = 746
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 138/343 (40%), Positives = 203/343 (59%), Gaps = 14/343 (4%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L + G S FPIQA T +L+G D++ R RTG GKT+AF P++E + +A ++
Sbjct: 369 LAALGAASPFPIQAATVKPILEGRDVLARGRTGSGKTIAFGAPLVERILR--AQAGQRRE 426
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
+GRAP L+L PTRELA Q+ +VGL + +YGG P Q LKKG+D++IG
Sbjct: 427 FGRAPKALILAPTRELALQIDRTVQPIARSVGLFTTQIYGGVPQARQVGALKKGVDIIIG 486
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGRI+D +++G +DLS ++ VLDE D M +GF+E V+ IL D + Q LLFSAT
Sbjct: 487 TPGRIEDLLKQGKLDLSQVQVTVLDEGDHMCELGFLEPVQRILRATADGS--QKLLFSAT 544
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
L V + +FL + ++ G + + S + H VL ++Q++ ++
Sbjct: 545 LDREVAALVDEFL-VEPAVYEVAGED--QDSGTIEHRVLVIEHRDKAQILDSLV---DRD 598
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
G+T++F T+ A LA+ A ALHGD+ Q +R L SG+ LVAT+VA
Sbjct: 599 GKTLVFARTRAYAEMLAEQFDEAGIAAVALHGDLNQQKRTRNLEKLTSGRVNVLVATDVA 658
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
ARG+ ++D+ L+IQ + P + + Y+HRSGRTGRAG +G V L
Sbjct: 659 ARGIHVDDIDLVIQADAPDEYKTYLHRSGRTGRAGRSGTVVTL 701
>gi|345009150|ref|YP_004811504.1| DEAD/DEAH box helicase [Streptomyces violaceusniger Tu 4113]
gi|344035499|gb|AEM81224.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
Tu 4113]
Length = 859
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 146/367 (39%), Positives = 209/367 (56%), Gaps = 24/367 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L++ GI S FPIQ MT + L G+D++G+A+TG GKTL F LP+LE + A +
Sbjct: 49 EALEAVGIMSPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVV---VSADVE 105
Query: 182 TGYGR------APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
G + AP LV++PTREL +QV D G + +YGG Y Q LK
Sbjct: 106 AGRAKPEQLTDAPQALVVVPTRELCQQVTNDLLTAGKVRAVRVLSIYGGRAYEPQVEALK 165
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
KG+DVV+GTPGR+ D + + LSS+K VLDEADEML +GF+ DVE I+ + K
Sbjct: 166 KGVDVVVGTPGRLLDLAGQKKLRLSSVKSLVLDEADEMLDLGFLPDVEKIIQLL--PAKR 223
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QT+LFSAT+P V ++ +++ +++ N+ V S + +V+
Sbjct: 224 QTMLFSATMPGQVISLARRYMSQPTHIRATAPDDEGATVANITQHVFRAHSMDKPEVVAR 283
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLPGAR------ALHGDIQQSQREVTLAGFRSGK 409
+++ G +IF TK +A+ +AD L AR A+HGD+ Q RE L FR+GK
Sbjct: 284 VLQADGR-GLVMIFCRTKRTAADIADQL--ARRGFASGAVHGDLGQGAREQALRAFRNGK 340
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----P 465
LV T+VAARG+D+ V +I + P D + Y+HR GRTGRAG +G+A+ L D P
Sbjct: 341 VDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGASGIAITLVDWDDIP 400
Query: 466 RKSSVSK 472
R ++K
Sbjct: 401 RWQLINK 407
>gi|410631430|ref|ZP_11342105.1| ATP-dependent RNA helicase DeaD [Glaciecola arctica BSs20135]
gi|410148876|dbj|GAC18972.1| ATP-dependent RNA helicase DeaD [Glaciecola arctica BSs20135]
Length = 585
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 163/443 (36%), Positives = 242/443 (54%), Gaps = 54/443 (12%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L + L G E PIQA ++LDG D++G A+TG GKT AF LP+L ++
Sbjct: 19 LLQALDKVGYEKPTPIQAECIPLILDGHDVLGTAQTGTGKTAAFALPMLANID----PDD 74
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGI 238
K T +LVL PTRELA QV E F VY + + +YGG+ Y Q +L++G
Sbjct: 75 KNT------QLLVLAPTRELAIQVAEAFQVYASFSKKINVLPIYGGSSYDNQIRQLRRGT 128
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
VV+GTPGR+ DHI++G + L LKF VLDEADEMLRMGF++DV ILG + K QT
Sbjct: 129 QVVVGTPGRVIDHIKKGTLKLDKLKFLVLDEADEMLRMGFIDDVTWILGHAPE--KRQTA 186
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P ++ I+ ++L +D K++ + K+ ++ +R + + + + I+
Sbjct: 187 LFSATMPDPIRKITKRYL-NDPKSVKI--ESKVATASTIRQRYCQVAGHHKLEALTRILE 243
Query: 359 CYSSGGRTIIFTETKESASQLADLLPGARA-----LHGDIQQSQREVTLAGFRSGKFMTL 413
G IIF TK + +LA+ L AR L+GDI Q+ RE T+ + GK L
Sbjct: 244 VEVFDG-VIIFVRTKTATMELAEKL-SARGYAVEPLNGDIPQNSRERTVDRLKKGKIDIL 301
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSK 472
VAT+V ARGLD+ V +I + P D E+Y+HR GRTGRAG G A++ R K +
Sbjct: 302 VATDVVARGLDVERVSHVINFDVPYDTESYVHRIGRTGRAGREGDAILFISHREKRMLFS 361
Query: 473 IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGL---- 528
IER + + ++ P +I+Q++++ + FK++ E + +S +
Sbjct: 362 IERATRQTIDSMTIP---------------SISQLNETRLSRFKNSVIEAIGDSSIETLI 406
Query: 529 -----------SAAELLAKALAK 540
+A E++ ALAK
Sbjct: 407 PIVESIQEETDAAPEVIMAALAK 429
>gi|328876634|gb|EGG24997.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 806
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 135/363 (37%), Positives = 205/363 (56%), Gaps = 16/363 (4%)
Query: 108 PNAVSRFRIS-VP--LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
PN ++ F S P + ++ G + IQ ++ + L G D++G A TG GKTLAF+
Sbjct: 398 PNPITSFGFSHFPSYIMSEIAVLGFTAPTSIQCQSWPIALKGRDMIGLAETGSGKTLAFL 457
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
LP + + P + G P VLVL PTRELA Q+ + D +G + + +CC+YGG
Sbjct: 458 LPAIVHINAQPYLET-----GDGPIVLVLTPTRELAMQIQNECDKFGSSSKIKNCCIYGG 512
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
P + Q L+ G+++V+ TPGR+ D +ERG +L + + VLDEAD ML MGF + +
Sbjct: 513 VPKYQQAQALRSGVEIVVATPGRLIDFLERGGTNLRRVTYLVLDEADRMLDMGFEDQIRK 572
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344
ILG++ QTL+FSAT P V+ ++ FL + +G+ ++ A+ V + C
Sbjct: 573 ILGQIRPDK--QTLMFSATWPKSVQSLAADFLVDPIQV--KIGSAELSANHKVTQHIEIC 628
Query: 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQREV 400
+ + ++ G + IIF ETK LA + A A+HGD Q +R+
Sbjct: 629 EKMDKQTKLFQYLKSIEPGAKCIIFLETKSGVGMLARNMSYAGFKCEAIHGDKTQGERDF 688
Query: 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV 460
L+ F+ GK L+AT+VA+RGLD+ D++ +I + P +E+YIHR GRTGRAG TG A
Sbjct: 689 ALSQFKDGKIQCLIATDVASRGLDVKDIKYVINYDFPNTIESYIHRIGRTGRAGATGTAY 748
Query: 461 MLY 463
L+
Sbjct: 749 TLF 751
>gi|372270358|ref|ZP_09506406.1| DEAD/DEAH box helicase [Marinobacterium stanieri S30]
Length = 576
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 157/432 (36%), Positives = 232/432 (53%), Gaps = 25/432 (5%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ L G E+ PIQA + +L+G DL+G A+TG GKT AF LP+L+ +
Sbjct: 16 LSTPILNALADVGYETPSPIQARSIPPLLEGQDLLGMAQTGTGKTAAFALPLLQRIDTTA 75
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
T P +LVL PTRELA QV + Y + GL + +YGG Y +Q L
Sbjct: 76 TH----------PQLLVLAPTRELALQVATACEKYSKHLPGLRTLSIYGGQGYDSQIRGL 125
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G V+IGTPGR+ DHI RG + L L+ VLDEADEMLRMGF++DVE IL +
Sbjct: 126 RRGAQVIIGTPGRVMDHIRRGTLQLDRLQSLVLDEADEMLRMGFIDDVEWILQHT--PAQ 183
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
Q LFSAT+P ++HI+ +L+ + + + + AST +R +++Q +
Sbjct: 184 RQIALFSATMPQAIRHIAENYLQ--EPAVIKIKAQTATAST-IRQRTWTVRGMSKTQALT 240
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLL-----PGARALHGDIQQSQREVTLAGFRSGK 409
I+ + ++F TK + LA+ L P A ALHGDI Q+QRE ++ + G+
Sbjct: 241 RILELHEHEA-ALVFVRTKTATESLAEELNQAGFPAA-ALHGDIAQAQRERIVSKLKKGE 298
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS 469
++AT+V ARGLD+ + +I + P D E+YIHR GRTGRAG G A++ R+
Sbjct: 299 LDVVIATDVVARGLDVERISHVINYDIPYDTESYIHRIGRTGRAGREGDAILFVTNREQR 358
Query: 470 VSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSV-IPAFKSAAEELLNNSG 527
+ K IER + + + P I + I ++S + + L S
Sbjct: 359 LLKQIERATRQPLDKLELPTAKQINALRAERLQQKILAAAESAKLDEYMPVISALQEQSE 418
Query: 528 LSAAELLAKALA 539
L+A +L+A LA
Sbjct: 419 LTAEQLVAATLA 430
>gi|257054731|ref|YP_003132563.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
gi|256584603|gb|ACU95736.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
Length = 559
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 150/356 (42%), Positives = 202/356 (56%), Gaps = 21/356 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQA+T + L G D++G+ARTG GKTL F +P+L+ L G
Sbjct: 38 LSESGIERTFDIQALTLPLALRGEDVIGQARTGTGKTLGFGVPLLQRLVT--------PG 89
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
G P LV++PTREL QV +D G +G+ +YGG PY +Q L+ G+DVVIG
Sbjct: 90 DG-TPQALVVVPTRELCLQVSQDLAEAGKYLGVRITSIYGGRPYESQIQSLRSGVDVVIG 148
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D E+ N+ L + VLDEADEML +GF+ D+E IL V + QT+LFSAT
Sbjct: 149 TPGRLLDLAEQRNLVLGKISTLVLDEADEMLDLGFLPDIERILRMVPEDR--QTMLFSAT 206
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P + ++ FL+ I E V S + ++I +++
Sbjct: 207 MPGPILTLARTFLRQPTH-IRAEAGETGAIHERTTQFVYRAHSLDKPELIAKVLQAEGR- 264
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
G T+IFT TK +A ++AD L A A+HGD+ Q RE L FRSGK LVAT+VA
Sbjct: 265 GLTMIFTRTKRTAQKVADDLVERGFAAAAVHGDLGQGAREQALRAFRSGKVDILVATDVA 324
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PRKSSVS 471
ARG+D+ V +I + P D + Y+HR GRTGRAG TGVA+ L D PR +S
Sbjct: 325 ARGIDVEGVTHVINYQMPEDEKTYVHRIGRTGRAGRTGVAITLVDWDEVPRWKLIS 380
>gi|384100045|ref|ZP_10001112.1| cold-shock DEAD-box protein [Rhodococcus imtechensis RKJ300]
gi|419961081|ref|ZP_14477090.1| cold-shock DEAD-box protein [Rhodococcus opacus M213]
gi|432350077|ref|ZP_19593489.1| cold-shock DEAD-box protein [Rhodococcus wratislaviensis IFP 2016]
gi|383842423|gb|EID81690.1| cold-shock DEAD-box protein [Rhodococcus imtechensis RKJ300]
gi|414573402|gb|EKT84086.1| cold-shock DEAD-box protein [Rhodococcus opacus M213]
gi|430770587|gb|ELB86530.1| cold-shock DEAD-box protein [Rhodococcus wratislaviensis IFP 2016]
Length = 586
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 157/423 (37%), Positives = 232/423 (54%), Gaps = 24/423 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G ES PIQA T +L G+D+VG A+TG GKT AF +PIL SK
Sbjct: 26 LSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPIL----------SKIDL 75
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
++P LVL PTRELA QV E F Y + GL +YGG Y Q L++G VV+
Sbjct: 76 TQKSPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSGLRRGAHVVV 135
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+E+G +DLS L + VLDEADEML+MGF EDVE IL + +V LFSA
Sbjct: 136 GTPGRVIDHLEKGTLDLSKLSYLVLDEADEMLKMGFQEDVERILADTPEYKQVA--LFSA 193
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P ++ IS +++ +++ K ++N+ + + + + ++
Sbjct: 194 TMPGAIRKISKQYMHD---PVEITMKSKTSTASNISQRYVQVAHQRKLDALTRVLEVEDF 250
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
IIF TK++ LA+ L A A++GDI Q+QRE T+ +SG LVAT+V
Sbjct: 251 EA-MIIFVRTKQATEDLAERLRSRGFSASAINGDIVQAQRERTIGQLKSGALDILVATDV 309
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERES 477
AARGLD++ + ++ + P D E+Y+HR GRTGRAG G A++ PR+ + K IE+ +
Sbjct: 310 AARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGEALLFVAPRERHLLKAIEKAT 369
Query: 478 GVKFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKSAAEELLNNSGLSAAELLAK 536
+ P D+ + ++IT+ ++ + F+ E+ + A+ +A
Sbjct: 370 RQPLAEMQLPSVDDVNAQRVAKFGDSITESLTSDNLALFRKMIEDYEQEHDVPLAD-IAA 428
Query: 537 ALA 539
ALA
Sbjct: 429 ALA 431
>gi|359419992|ref|ZP_09211936.1| putative ATP-dependent RNA helicase [Gordonia araii NBRC 100433]
gi|358244096|dbj|GAB10005.1| putative ATP-dependent RNA helicase [Gordonia araii NBRC 100433]
Length = 534
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 142/355 (40%), Positives = 202/355 (56%), Gaps = 20/355 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L + G F IQ +T + L G DL+G+ARTG GKT F +P+L L PT ++
Sbjct: 38 LIADGKTHTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLHRLLTAPTSGVRE-- 95
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLT----------SCCLYGGAPYHAQEFK 233
P LV++PTREL QV D V G V +T +YGG PY +Q +
Sbjct: 96 LDNTPRALVIVPTRELCLQVTGDLAVAGKGVDVTLTDGTTRPLKVTSIYGGRPYESQIAE 155
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L+ G+DVV+GTPGR+ D ++G++ L ++ VLDEADEML +GF+ D+E IL V A
Sbjct: 156 LQAGVDVVVGTPGRLLDLAQQGHLVLGKVEILVLDEADEMLDLGFLPDIERILAAVPSAR 215
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
QT+LFSAT+P + ++ FL N+ +H V + +++++
Sbjct: 216 --QTMLFSATMPGPIVTLARTFLNRPTHIRAEHANDSAVHERTTQH-VYRAHALDKAELV 272
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409
+++ G T+IFT TK +A ++AD L A+HGD+ Q RE L+ FR GK
Sbjct: 273 ARVLQADGRGA-TMIFTRTKRTAQKVADDLAERGFAVGAVHGDLGQVAREKALSAFREGK 331
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
LVAT+VAARG+DI+DV +I + P D + Y+HR GRTGRAG TG+A+ L D
Sbjct: 332 IDVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGRTGIAITLVD 386
>gi|448522534|ref|XP_003868713.1| Ded1 protein [Candida orthopsilosis Co 90-125]
gi|380353053|emb|CCG25809.1| Ded1 protein [Candida orthopsilosis]
Length = 636
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 144/364 (39%), Positives = 207/364 (56%), Gaps = 15/364 (4%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKA 178
L E +K P+Q + +V G DL+ A+TG GKT F+ P+L ES NGP
Sbjct: 169 LVENIKFSKFTKPTPVQKYSVPIVAGGRDLMACAQTGSGKTGGFLFPVLSESYANGPAPV 228
Query: 179 SKKTG----YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ TG + P+VLV+ PTREL Q++++ + + C +YGGA Q +L
Sbjct: 229 PESTGTFSSHKAYPTVLVMAPTRELVSQIYDESKKFAYRSWVRPCVVYGGADIGNQIRQL 288
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE--DA 292
+G D+++ TPGR+KD +ERG + L+++K+ VLDEAD ML MGF + I+ + +
Sbjct: 289 DRGCDLLVATPGRLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQIRQIVQECDMPSV 348
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
QTL+FSAT P ++ ++ FLK+ I L S N+ VL + V
Sbjct: 349 ENRQTLMFSATFPRDIQMLARDFLKN---YIFLSVGRVGSTSENITQKVLYVEDDEKKSV 405
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSG 408
I D++ +S G TI+FTETK A LAD L A A+HGD Q +RE LA F++G
Sbjct: 406 ILDMLNA-NSAGLTIVFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKNG 464
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS 468
K LVAT VAARGLDI +V +I + P D++ Y+HR GRTGRAGN G+A ++
Sbjct: 465 KAPILVATAVAARGLDIPNVSHVINYDLPGDIDDYVHRIGRTGRAGNVGIATAFFNRNNK 524
Query: 469 SVSK 472
+++K
Sbjct: 525 NIAK 528
>gi|410639150|ref|ZP_11349703.1| ATP-dependent RNA helicase DeaD [Glaciecola lipolytica E3]
gi|410141678|dbj|GAC16908.1| ATP-dependent RNA helicase DeaD [Glaciecola lipolytica E3]
Length = 575
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 166/435 (38%), Positives = 242/435 (55%), Gaps = 38/435 (8%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L + ++ G E PIQA + ++L G DL+G+A+TG GKT AF LP+L +L
Sbjct: 18 LLQAIEKVGYEKPSPIQAESIPLILQGHDLLGQAQTGTGKTGAFALPMLANL-------D 70
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGI 238
Y + +LVL PTRELA QV E F VY + + +YGG Y Q +LK+G+
Sbjct: 71 IDADYTQ---LLVLAPTRELAIQVAEAFQVYASFSKKIRVLPIYGGQSYDNQIRQLKRGV 127
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
VV+GTPGR+ DHI+RG + L L+F VLDEADEMLRMGF++DVE IL + QT
Sbjct: 128 QVVVGTPGRVIDHIKRGTLKLDKLRFLVLDEADEMLRMGFIDDVEWILSHAPETR--QTA 185
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P+ +K I+ ++L ++ K + + K+ ++ +R + + + + I+
Sbjct: 186 LFSATMPAPIKKITERYL-NNPKHVKIAS--KVSTASTIRQRFCQVAGHHKLEALTRIME 242
Query: 359 CYSSGGRTIIFTETKESASQLADLLPGARA-----LHGDIQQSQREVTLAGFRSGKFMTL 413
G IIF TK + +LAD L AR L+GDI Q+ RE T+ + GK L
Sbjct: 243 VEEFDG-VIIFVRTKTATVELADKL-SARGYDVEPLNGDIAQNARERTVDRLKQGKIDIL 300
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSK 472
VAT+V ARGLD+ V +I + P D E+Y+HR GRTGRAG G A++ R K +
Sbjct: 301 VATDVVARGLDVERVSHVINYDVPYDTESYVHRIGRTGRAGRQGDAILFISHREKRMLFS 360
Query: 473 IERESGVKFEHISAPQPADIA-------KAAGVEAAETITQVSDSVIPAFKSAAEELLNN 525
IE+ + E + P ++I K + +EA + + +S+IP +S +E
Sbjct: 361 IEKATKQNIEQMPIPSISEINQTRLSRFKTSVIEAIQDDS--IESLIPIVESIQKET--- 415
Query: 526 SGLSAAELLAKALAK 540
+A E + ALAK
Sbjct: 416 --EAAPEKIMAALAK 428
>gi|331006491|ref|ZP_08329791.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC1989]
gi|330419691|gb|EGG94057.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC1989]
Length = 573
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 151/396 (38%), Positives = 221/396 (55%), Gaps = 25/396 (6%)
Query: 105 SEHPNAVSRFRISVP--LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLA 162
SE PN S +++P + + L G E+ PIQA + ++ +G DL+G+A+TG GKT A
Sbjct: 4 SETPNTPSFSELNLPEAILKTLVELGYETPSPIQAASIPIIQEGRDLLGQAQTGTGKTAA 63
Query: 163 FVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLY 222
F LP+L + PTK + P +LVL PTRELA QV E F Y + T +Y
Sbjct: 64 FALPLLSKI--DPTK--------KHPQLLVLAPTRELAIQVAEAFQTYSRHMSCTVLPIY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG Y Q +LK+G +++GTPGR+ DHI R + L L+ VLDEADEMLRMGF++DV
Sbjct: 114 GGQSYDNQLRQLKRGTQIIVGTPGRVMDHIRRKTLKLDQLEALVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E IL + Q LFSAT+P +K ++ K+L + K + K +T +R
Sbjct: 174 EWILEHTPKSR--QIALFSATMPKEIKKVADKYLVNPKH---IKIETKTSTATTIRQRFS 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGDIQQSQ 397
+ + + I+ G I+F TK + +LA+ L AR AL+GDI Q+Q
Sbjct: 229 IVNRNQKLDAFTRILEVEDFDG-VIVFVRTKVATLELAEKL-SARGHSCAALNGDIPQNQ 286
Query: 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG 457
RE + + G L+AT+V ARGLD+ + +I + P D E+Y+HR GRTGRAG +G
Sbjct: 287 RENIVEKLKRGTLDILIATDVVARGLDVKRISHVINYDIPLDTESYVHRIGRTGRAGRSG 346
Query: 458 VAVMLYDPRKSSVSK-IERESGVKFEHISAPQPADI 492
A++ R+ + + IER++ E + P +D+
Sbjct: 347 EAILFVTSRERHLLRAIERDTNSVVEPMDVPSASDV 382
>gi|254388923|ref|ZP_05004154.1| hypothetical protein SSCG_01341 [Streptomyces clavuligerus ATCC
27064]
gi|197702641|gb|EDY48453.1| hypothetical protein SSCG_01341 [Streptomyces clavuligerus ATCC
27064]
Length = 891
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 142/355 (40%), Positives = 203/355 (57%), Gaps = 20/355 (5%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L++ GI + FPIQ MT + L G+D++G+A+TG GKTL F LP+LE +T A +
Sbjct: 57 EALEAVGILNPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVT---VPADVE 113
Query: 182 TGYGR------APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
G R AP LV++PTREL QV D G + +YGG Y Q L+
Sbjct: 114 AGRARPDQLSEAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALR 173
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
KG+DV++GTPGR+ D + +DLS ++ VLDEADEML +GF+ DVE I+ + K
Sbjct: 174 KGVDVIVGTPGRLLDLAGQKKLDLSQVRALVLDEADEMLDLGFLPDVEKIIQLL--PAKR 231
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QT+LFSAT+P V ++ +++ +++ N+ V S + +++
Sbjct: 232 QTMLFSATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANITQRVYRAHSMDKPEMVSR 291
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLPGAR------ALHGDIQQSQREVTLAGFRSGK 409
I++ G +IF TK +A+ +AD L AR A+HGD+ Q RE L FR+GK
Sbjct: 292 ILQAEGR-GLAMIFCRTKRTAADIADQL--ARRGFASGAVHGDLGQGAREQALRAFRNGK 348
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
LV T+VAARG+D+ V +I + P D + Y+HR GRTGRAG +G AV L D
Sbjct: 349 VDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRVGRTGRAGASGTAVTLVD 403
>gi|116671331|ref|YP_832264.1| DEAD/DEAH box helicase [Arthrobacter sp. FB24]
gi|116611440|gb|ABK04164.1| DEAD/DEAH box helicase domain protein [Arthrobacter sp. FB24]
Length = 585
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 143/390 (36%), Positives = 218/390 (55%), Gaps = 11/390 (2%)
Query: 91 VEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLV 150
+EPE + E+ + + + + + E L GI FPIQAMT + L G D++
Sbjct: 19 IEPEETIISDEKPHEIEEKSFADYNVRADIVESLADAGITHPFPIQAMTLPVALAGHDII 78
Query: 151 GRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210
G+A+TG GKTL F +P L+ + K AP LV++PTRELA QV +D +
Sbjct: 79 GQAKTGTGKTLGFGIPALQRVVGRDDPGFDKLAVPGAPQALVIVPTRELAVQVAKDLENA 138
Query: 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270
+YGG Y Q L+KG+++V+GTPGR+ D ++ ++ L ++K +LDEA
Sbjct: 139 ARKRNARIATIYGGRAYEPQVDSLQKGVEIVVGTPGRLIDLYKQKHLSLKNVKIVILDEA 198
Query: 271 DEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK 330
DEML +GF+ DVE ++ QTLLFSAT+P V ++ +++ +++
Sbjct: 199 DEMLDLGFLPDVETLIAGTPAVR--QTLLFSATMPGPVIAMARRYMTQPTHIRAADPDDE 256
Query: 331 MKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GA 386
++R ++ S + +V+ I++ G RTIIFT+TK +A+++A+ L A
Sbjct: 257 GLTKRDIRQLIYRAHSMDKIEVVARILQARGRG-RTIIFTKTKRTAAKVAEELVDRGFAA 315
Query: 387 RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHR 446
A+HGD+ Q RE L FR+ K LVAT+VAARG+D++DV +I + D + Y+HR
Sbjct: 316 AAIHGDLGQGAREQALRAFRNNKVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHR 375
Query: 447 SGRTGRAGNTGVAVMLYD----PRKSSVSK 472
GRTGRAGN G AV D PR ++K
Sbjct: 376 VGRTGRAGNKGTAVTFVDWDDMPRWGLINK 405
>gi|358637830|dbj|BAL25127.1| ATP-dependent RNA helicase [Azoarcus sp. KH32C]
Length = 642
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 157/423 (37%), Positives = 224/423 (52%), Gaps = 44/423 (10%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ E L G E+ PIQA ++DG D++G A+TG GKT AF LP+L+ L
Sbjct: 35 LSAPILEALAGIGYETPSPIQAACIPHLMDGHDILGEAQTGTGKTAAFALPLLDRLDLSL 94
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
+ P VLVL PTRELA QV E F Y + G +YGG Q +L
Sbjct: 95 KR----------PQVLVLTPTRELAIQVAEAFQRYARHLPGFHVLPIYGGQSMVVQLRQL 144
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
+G VV+GTPGR+ DH+ER +++L LK VLDEADEMLRMGF++DVE IL V +
Sbjct: 145 DRGAHVVVGTPGRVMDHLERRSLNLDGLKTLVLDEADEMLRMGFIDDVEWILEHV--PTE 202
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN----VRHIVLPCSSSARS 350
QT LFSAT+P ++ ++ ++L+ ++ K+++ST +R + +
Sbjct: 203 RQTALFSATMPDPIRRVAHRYLRDPREV-------KIRSSTTTVATIRQRFCQIGIAHKL 255
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFR 406
+ I+ IIF TK + +LAD L A AL+GD+ Q RE + +
Sbjct: 256 DALTRILEVEEDLDAAIIFARTKTATVELADKLEARGYSAAALNGDMTQQLRERVIEQLK 315
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
G +VAT+VAARGLD+ + +I + P D EAY+HR GRTGRAG TG A++ PR
Sbjct: 316 GGALDIVVATDVAARGLDVPRISHVINYDIPYDTEAYVHRIGRTGRAGRTGSAILFVTPR 375
Query: 467 KSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNN 525
+ + K IER + E + P T V+D + AF+ ++L +
Sbjct: 376 EMRMLKVIERATRQPIEPLQLP---------------TREAVADKRVAAFRQQVAQVLQS 420
Query: 526 SGL 528
L
Sbjct: 421 EDL 423
>gi|375137802|ref|YP_004998451.1| DNA/RNA helicase [Mycobacterium rhodesiae NBB3]
gi|359818423|gb|AEV71236.1| DNA/RNA helicase, superfamily II [Mycobacterium rhodesiae NBB3]
Length = 426
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 146/363 (40%), Positives = 210/363 (57%), Gaps = 20/363 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GI++ FPIQA T L G D++GR RTG GKT AF+LP++ LT PTK
Sbjct: 17 LAGNGIDTPFPIQAATLPDSLAGRDVLGRGRTGSGKTYAFLLPMVTRLTTSPTKRLP--- 73
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
GR P L+L PTREL Q+ A L S ++GG + Q KL+ G+D+VI
Sbjct: 74 -GR-PRALILAPTRELVAQIEASLAPLAVATNLRSVVVFGGVGHQPQIDKLRAGVDIVIA 131
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
PGR++DH++ G+ DLS+++ VLDEAD M +GF+ V+ +L K Q +LFSAT
Sbjct: 132 CPGRLEDHVQSGHADLSAVEITVLDEADHMADLGFLPPVKRLLDKTPRDG--QRMLFSAT 189
Query: 304 LPSWVKHISTKFLKSD-KKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
L V + ++L + ++D + T++ H VL S+R V+ D+ +S
Sbjct: 190 LDRGVDVLVKRYLTDPVEHSVD----SEQSPVTDMEHHVLHVEKSSRINVLADL---AAS 242
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
GRTI+F TK A LA L A LHG++ Q+ R LA F G LVAT++
Sbjct: 243 PGRTIVFARTKYGAKNLARQLNSRGVSAVELHGNLSQNARTRNLAAFSEGSASVLVATDI 302
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG-VAVMLYDPRKSSVSKIERES 477
AARG+ +++V L++ +PP + +AY+HRSGRT RAGN G V ++ D + S V ++ R++
Sbjct: 303 AARGIHVDEVSLVVHADPPVEHKAYLHRSGRTARAGNEGTVVTLMLDEQVSDVRQLTRKA 362
Query: 478 GVK 480
GVK
Sbjct: 363 GVK 365
>gi|170782512|ref|YP_001710845.1| ATP-dependent helicase [Clavibacter michiganensis subsp.
sepedonicus]
gi|169157081|emb|CAQ02256.1| putative ATP-dependent helicase [Clavibacter michiganensis subsp.
sepedonicus]
Length = 761
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 146/344 (42%), Positives = 205/344 (59%), Gaps = 16/344 (4%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L+ G S FPIQA T VL G D++GR RTG GKT+AF P++E L +K
Sbjct: 391 LEELGASSPFPIQAATIPDVLAGRDVLGRGRTGSGKTIAFGAPLVERLLE--NDGAKNRK 448
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
GR P L+L PTRELA Q+ +VGL + ++GG P Q L++G+D++I
Sbjct: 449 MGRKPRALILAPTRELAMQIDRTVQPIARSVGLFTTTIFGGVPQFKQVGALQRGVDILIA 508
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR++D I++G +DLS + VLDEAD M +GF+E V+ IL +V+ Q LLFSAT
Sbjct: 509 TPGRLEDLIDQGRLDLSEIVVTVLDEADHMCDLGFLEPVQRILRQVK--KDGQRLLFSAT 566
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
L V + +FL S ++ V E +AS+ + H VL ++ +I + SSG
Sbjct: 567 LDKGVATLVNEFLPS--PSVHEVAGED-QASSTIDHRVLLIEQRDKAAIIEQL----SSG 619
Query: 364 -GRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G+T+IF T+ A QLAD L A +LHGD+ Q++R L SGK LVAT+V
Sbjct: 620 EGKTLIFARTRAFAEQLADQLEDAGIPATSLHGDLNQARRTRNLQLLTSGKVRVLVATDV 679
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
AARG+ ++D+ L+IQ + P + ++Y+HR+GRTGRAG G V L
Sbjct: 680 AARGIHVDDIGLVIQADAPDEYKSYLHRAGRTGRAGKQGTVVTL 723
>gi|377574212|ref|ZP_09803243.1| putative DEAD-box RNA helicase [Mobilicoccus pelagius NBRC 104925]
gi|377537015|dbj|GAB48408.1| putative DEAD-box RNA helicase [Mobilicoccus pelagius NBRC 104925]
Length = 544
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 146/401 (36%), Positives = 226/401 (56%), Gaps = 20/401 (4%)
Query: 89 AKVEPEAGVEEQERGESE----HPNAV-----SRFRISVPLREKLKSKGIESLFPIQAMT 139
A VEP Q G HP AV + F + + L GI + FPIQAMT
Sbjct: 16 AVVEPTIDASAQAAGADTTIEAHPEAVVEKTFADFDVHPDIVAALADAGIVTPFPIQAMT 75
Query: 140 FDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTREL 199
+ L G D++G+A+TG GKTL F +P+L+ + + + + P LV+ PTREL
Sbjct: 76 LPVALGGYDIIGQAKTGTGKTLGFGVPLLDRVVAPGDEGFEDLPHPGRPQGLVVAPTREL 135
Query: 200 AKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDL 259
A QV D G+ +YGG + Q L+KG++VV+GTPGR+ D +++G+++L
Sbjct: 136 ANQVAGDLTRAASRRGIRVTTIYGGRAFEPQIEALQKGVEVVVGTPGRLIDLMQQGHLNL 195
Query: 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSD 319
+++ VLDEADEML +GF+ DVE +L + + QT+LFSAT+P V ++ +++
Sbjct: 196 HAIRTLVLDEADEMLDLGFLPDVEKLLAQTPASR--QTMLFSATMPGAVVTLARRYMTRP 253
Query: 320 KKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQL 379
+ +++ + + V + + +++ I++ G TIIF+ TK +A+++
Sbjct: 254 THIRAISDDDEGQTVAAIDQYVYRAHAMDKVEMVARILQAEGR-GLTIIFSRTKRTAAKV 312
Query: 380 ADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCE 435
AD L A ++HGD+ Q RE L FR+GK LVAT+VAARG+D+ +V +I +
Sbjct: 313 ADELADRGFAAASIHGDLGQGAREQALRAFRNGKVDILVATDVAARGIDVENVTHVINYQ 372
Query: 436 PPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PRKSSVSK 472
P D + Y+HR+GRTGRAG+ GVA+ L D PR + K
Sbjct: 373 CPEDEKTYLHRTGRTGRAGHKGVAITLVDWDDMPRWGLIDK 413
>gi|149377730|ref|ZP_01895465.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
gi|149358015|gb|EDM46502.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
Length = 503
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 153/380 (40%), Positives = 207/380 (54%), Gaps = 24/380 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E + + G E PIQA T +L G L+G A+TG GKT AF LP+L S+
Sbjct: 17 EAVAAVGYEKPSPIQAQTIPALLAGKHLLGVAQTGTGKTAAFALPLL----------SRI 66
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDV 240
AP +LVL PTRELA QV E F Y +YGG + Q L++G V
Sbjct: 67 DASVMAPQILVLAPTRELAIQVAEAFTTYASKFRNFHVLPIYGGQDFFPQIKGLRRGAQV 126
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
++GTPGR+ DH+ +G + L SLK VLDEADEMLRMGF++DVE IL K D Q LF
Sbjct: 127 IVGTPGRMLDHLRKGTLKLDSLKALVLDEADEMLRMGFIDDVEAILAKTPD--NCQRALF 184
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P +K ++ +L+ D + + + + + VLP + + + I+
Sbjct: 185 SATMPPQIKKVAQTYLR-DATEVKI--ESETRTVERISQFVLPVYAERKLDALTRILEVE 241
Query: 361 SSGGRTIIFTETKESASQLADLLPGARA-----LHGDIQQSQREVTLAGFRSGKFMTLVA 415
G TIIF TK + LA+ L AR L+GD+ Q QRE T+ + GK +VA
Sbjct: 242 PVDG-TIIFVRTKAETTLLAEKL-SARGHAVAPLNGDLNQRQREQTVEDLKRGKKDIIVA 299
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIE 474
T+VAARGLD+ + +I + P D EAYIHR GRTGRAG G A++L PR +S + +E
Sbjct: 300 TDVAARGLDVPRITHVINYDVPYDTEAYIHRVGRTGRAGREGKAILLVTPRERSWLRTLE 359
Query: 475 RESGVKFEHISAPQPADIAK 494
R + E P P + K
Sbjct: 360 RATNSPMESYELPSPNALKK 379
>gi|376287519|ref|YP_005160085.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae BH8]
gi|371584853|gb|AEX48518.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae BH8]
Length = 680
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 146/397 (36%), Positives = 226/397 (56%), Gaps = 23/397 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +++ G D++G A+TG GKT AF LPIL + KK R
Sbjct: 86 GFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTAAFALPILSRID------VKK----RH 135
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P L+L PTRELA QV + F + +G + +YGG Y Q L++G +++GTPG
Sbjct: 136 PQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRRGAQIIVGTPG 195
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+E+G++D+S+L+F VLDEADEML MGF EDVE IL + +V LFSAT+P+
Sbjct: 196 RVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVA--LFSATMPN 253
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ +S ++K D I + + + +TN+ L + + + I+
Sbjct: 254 GIRRLSRDYMK-DPHEIQV--KSQTRTNTNITQRYLNVAHRNKLDALTRILEVTEFEA-M 309
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK ++A+ L A A++GDI Q+QRE T+ + G+ LVAT+VAARG
Sbjct: 310 IMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 369
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKF 481
LD+ + + + P D E+Y+HR GRTGRAG +G A++ PR + + IER + K
Sbjct: 370 LDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNAKL 429
Query: 482 EHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKS 517
+ P ++ ++ + A++I + + D + F+S
Sbjct: 430 IEMDLPTVDEVNESRKAKFADSIAESLEDDQVAIFRS 466
>gi|373456662|ref|ZP_09548429.1| DEAD/DEAH box helicase domain protein [Caldithrix abyssi DSM 13497]
gi|371718326|gb|EHO40097.1| DEAD/DEAH box helicase domain protein [Caldithrix abyssi DSM 13497]
Length = 527
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 165/434 (38%), Positives = 243/434 (55%), Gaps = 25/434 (5%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG-SDLVGRARTGQGKTLAFVLPILES 170
S F +S + E + KG E IQA+T M+LD ++L+ +A+TG GKT AF LP++E
Sbjct: 8 SDFALSTHVLEAIDRKGFEKPTDIQALTIPMMLDNDANLIAQAQTGTGKTAAFGLPLIEK 67
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ P+ R+ L+L+PTRELA QV ++ D G L +YGG Q
Sbjct: 68 I--DPST--------RSVQALILVPTRELAIQVADEIDSLKGEKDLKIVPIYGGQSIETQ 117
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
KLK+GI +V+GTPGR+ DHI R + L ++ +LDEADEML MGF+ED+E I+
Sbjct: 118 LRKLKQGIHIVVGTPGRVIDHINRKTLKLDRIEQLILDEADEMLNMGFIEDMEEIMRHTN 177
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
+ TLLFSAT+P +K ++ K++ D + E++ S I S +
Sbjct: 178 PDKR--TLLFSATIPPRIKDLARKYM--DGYEMITAKKEQLMPSL-TEQIFYEVRVSEKF 232
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLA-DLLP---GARALHGDIQQSQREVTLAGFR 406
+ + II + +IF +T++ A+ LA DLL A A+HG+I Q QRE +L F+
Sbjct: 233 RALCRIID-FEDHFYGLIFCKTRKDAASLAEDLLERGYSAEAIHGEISQGQRERSLNRFK 291
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
S K LVAT+VAARG+D+ND+ +I P+D E+Y+HR GRTGRAG GVAV P
Sbjct: 292 SRKVNILVATDVAARGIDVNDISHVINYALPQDPESYVHRIGRTGRAGKQGVAVTFVTPG 351
Query: 467 KS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPA-FKSAAEELLN 524
++ I++ +G K P+ DI A + +E + +S+ I + A+ELL
Sbjct: 352 ETRKFQFIQQIAGRKIMKARLPRAQDIINAKRNKISEQLKNISEGKIDKHYLEWAQELLK 411
Query: 525 NSGLSAAELLAKAL 538
++ AE+LA L
Sbjct: 412 DN--DPAEVLAAVL 423
>gi|167756706|ref|ZP_02428833.1| hypothetical protein CLORAM_02244 [Clostridium ramosum DSM 1402]
gi|237732712|ref|ZP_04563193.1| helicase [Mollicutes bacterium D7]
gi|374627718|ref|ZP_09700120.1| hypothetical protein HMPREF0978_03440 [Coprobacillus sp.
8_2_54BFAA]
gi|167702881|gb|EDS17460.1| DEAD/DEAH box helicase [Clostridium ramosum DSM 1402]
gi|229384207|gb|EEO34298.1| helicase [Coprobacillus sp. D7]
gi|373912957|gb|EHQ44800.1| hypothetical protein HMPREF0978_03440 [Coprobacillus sp.
8_2_54BFAA]
Length = 535
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 143/395 (36%), Positives = 227/395 (57%), Gaps = 22/395 (5%)
Query: 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194
IQ ++L G D++G+A+TG GKTLAF +L +T P++ + P ++L
Sbjct: 30 IQEEAIPVLLTGVDVIGQAQTGTGKTLAFGSVLLSKIT--PSQR-------KLPQAIILS 80
Query: 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
PTRELA Q+HE+ + G G C+YGG+ Q +KKGID+++GTPGR+ D + R
Sbjct: 81 PTRELAMQIHEEMERIGKYNGSRITCVYGGSDIERQIRTIKKGIDIIVGTPGRVMDLMRR 140
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTK 314
+ L+ +KF VLDEADEML MGFVED+E IL KV+D QT+LFSAT+P+ +K I+
Sbjct: 141 NVLKLNDVKFVVLDEADEMLNMGFVEDIETILEKVDDDR--QTILFSATMPAGIKKIAQN 198
Query: 315 FLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKE 374
++ + + + ++ K +T+V+ R + + +I ++ IIF TK
Sbjct: 199 YMHDNFEHVAVLS--KQTTATSVKQFYYEVKQKDRFEAMCRLIDV-ANVQTGIIFCRTKR 255
Query: 375 SASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQL 430
S ++ + + A A+HGD+ Q+ R TL F+ G L+AT+VAARG+D+ +V
Sbjct: 256 SVDEVTEQMQQANYNVEAMHGDLSQNHRMNTLRKFKKGTINFLIATDVAARGIDVENVTH 315
Query: 431 IIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQP 489
+I E P+D+E+Y+HR GRTGRA G A + PR K + +IER + + P
Sbjct: 316 VINYELPQDIESYVHRIGRTGRADKEGQAYSIITPREKGFLRQIERVTKSSITKATIPTL 375
Query: 490 ADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLN 524
+I++A + +++V D ++ ++L+N
Sbjct: 376 QEISEA---KIGTLVSKVEDQILAGNHKKFKQLVN 407
>gi|374320874|ref|YP_005074003.1| ATP-dependent RNA helicase [Paenibacillus terrae HPL-003]
gi|357199883|gb|AET57780.1| ATP-dependent RNA helicase [Paenibacillus terrae HPL-003]
Length = 541
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 144/374 (38%), Positives = 220/374 (58%), Gaps = 37/374 (9%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ LK +GI + P+Q + ++++G D++ A TG GKTLAF+LPIL+ +
Sbjct: 15 DALKEQGITAPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQKMNLDK------ 68
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGA-VGLTSCCLYGGAPYHAQEFKLKKGIDV 240
R P LV+ PTRELA Q+ ++ ++ L+ +YGG Q KLK G +
Sbjct: 69 ----RHPQALVIAPTRELALQITQEANILAATEPSLSLLAVYGGQDVERQLRKLKGGAQL 124
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
+IGTPGR+ DH+ RG +DLS +K VLDEAD+ML MGF+ DVE IL +V + QT+LF
Sbjct: 125 IIGTPGRLLDHLRRGTLDLSGVKMLVLDEADQMLHMGFLNDVETILQEV--PYRRQTMLF 182
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV-----RHIVLPCSSSARSQVIPD 355
SAT+P+ ++ ++ ++ + +D+ K+K++++V R +V+ + + Q + D
Sbjct: 183 SATMPAGIRKLARVYMN---EPVDV----KVKSASSVPVSQIRQVVVQTTDRGKQQALVD 235
Query: 356 II---RCYSSGGRTIIFTETKESAS----QLADLLPGARALHGDIQQSQREVTLAGFRSG 408
++ R Y + +IF TK A+ QL ++ + LHGD+ Q++RE + FR
Sbjct: 236 MLNADRPYLA----VIFCRTKRRAAALNEQLQEMGFESGELHGDLSQNKREQVMKAFREA 291
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK- 467
K LVAT+VAARGLD+ V + + P+D E+YIHR GRTGRAG GVAV L PR
Sbjct: 292 KLQLLVATDVAARGLDVEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDV 351
Query: 468 SSVSKIERESGVKF 481
+ I++ +GV F
Sbjct: 352 PELRNIQKVAGVTF 365
>gi|384251941|gb|EIE25418.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 589
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 142/338 (42%), Positives = 202/338 (59%), Gaps = 17/338 (5%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY--GRAPSVL 191
PIQA + ++ GSDLVG A TG GKTLAF LP L+ + A K G G+ PS+L
Sbjct: 196 PIQAQCWPIIQSGSDLVGIAATGSGKTLAFGLPGLKHIL-----AQKAAGVSTGKGPSML 250
Query: 192 VLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDH 251
VL PTRELA+Q+ + G + GL + C YGG P Q L++G+DVV+ TPGR++D
Sbjct: 251 VLAPTRELAQQIAAVLEEAGQSAGLRTLCAYGGVPKPPQTAALRQGVDVVVATPGRLEDL 310
Query: 252 IERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHI 311
I G LS + + VLDEAD ML +GF + I G A++ QTL+FSAT P ++ +
Sbjct: 311 INDGACRLSGVTYLVLDEADRMLDLGFEPHIRAIAGATR-ADR-QTLMFSATWPPAIQKL 368
Query: 312 STKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG--GRTIIF 369
+++F S + +G++ + AS +VR IV +AR + + +++R Y S R ++F
Sbjct: 369 ASEFQASIARVT--IGSQDLSASHSVRQIVEVIDPAARDRRLEELLRKYHSSRKNRVLVF 426
Query: 370 TETKESA----SQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDI 425
K+ A +QL+ RA+HGDI Q QR + F+SGK L+AT+VAARGLDI
Sbjct: 427 VLYKKEAARVEAQLSKRGWNVRAIHGDINQRQRSEAVEQFKSGKVPLLIATDVAARGLDI 486
Query: 426 NDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
DV+ +I P E Y+HR GRTGRAG +G++ +
Sbjct: 487 PDVEAVINYSFPLTTEDYVHRIGRTGRAGKSGLSHTFF 524
>gi|375085825|ref|ZP_09732447.1| hypothetical protein HMPREF9454_01058 [Megamonas funiformis YIT
11815]
gi|374566310|gb|EHR37555.1| hypothetical protein HMPREF9454_01058 [Megamonas funiformis YIT
11815]
Length = 529
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 145/375 (38%), Positives = 215/375 (57%), Gaps = 23/375 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
++ G E PIQA T + L+G D++G+A+TG GKT AF +P +E + +K
Sbjct: 21 VRDMGFEEPSPIQAQTIPLALEGHDVIGQAQTGTGKTAAFGIPTIEQI-------DEKNK 73
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
Y +A LVL PTRELA Q+ E+F+ G + + +YGG Q L+ G+ VV+G
Sbjct: 74 YIQA---LVLTPTRELAIQIAEEFNKIGKYKRVKTLPVYGGQMIDRQIRALRFGVKVVVG 130
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ DHI R I L +K +LDEADEML MGF+ED+E I+ V QTLLFSAT
Sbjct: 131 TPGRLIDHIRRNTIKLDHVKMLILDEADEMLDMGFIEDIEEIMSNVAQGENRQTLLFSAT 190
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV-IPDIIRCYSS 362
+P+ ++ ++ ++ + +K ++ E++ + V + + DI
Sbjct: 191 MPAPIEKLARSYMHNPQKV--MISREQLTVPS-VDQLYFETRDKFEGLCRVLDI----ED 243
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G+ IIF TK++ L L A +LHGD+ Q+QR+ + FR GK L+AT+V
Sbjct: 244 SGKYIIFCRTKKNVDDLQASLQVRGYMAGSLHGDMSQAQRDRVMRRFREGKLEILIATDV 303
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERES 477
AARG+DI+D+ +I + P+D E+Y+HR GRTGRAG TG+AV +P++ K IER +
Sbjct: 304 AARGIDIDDISHVINFDIPQDHESYVHRIGRTGRAGRTGIAVTFIEPKEYRQLKLIERMT 363
Query: 478 GVKFEHISAPQPADI 492
+ P PAD+
Sbjct: 364 KSRMIRGELPTPADV 378
>gi|75773731|gb|AAI04622.1| DDX50 protein [Bos taurus]
Length = 446
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 122/265 (46%), Positives = 173/265 (65%), Gaps = 8/265 (3%)
Query: 271 DEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVG 327
D+ML +GF E VE IL K + + QTLLFSAT P WV ++ K++KS + +DLVG
Sbjct: 2 DQMLDLGFAEQVEDILHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVG 61
Query: 328 NEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLL 383
KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A +
Sbjct: 62 KMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIK 121
Query: 384 PGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAY 443
A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+Y
Sbjct: 122 QNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESY 181
Query: 444 IHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAE 502
IHRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+ ++A
Sbjct: 182 IHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIR 241
Query: 503 TITQVSDSVIPAFKSAAEELLNNSG 527
++ VS + + F+ +A+ L+ G
Sbjct: 242 SLASVSYAAVDFFRPSAQRLIEEKG 266
>gi|357022809|ref|ZP_09085031.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
thermoresistibile ATCC 19527]
gi|356477430|gb|EHI10576.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
thermoresistibile ATCC 19527]
Length = 481
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 148/362 (40%), Positives = 206/362 (56%), Gaps = 22/362 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQ +T + L G DL+G+ARTG GKT AF +P+L+ +T + TG
Sbjct: 4 LAEHGIEHPFAIQELTLPLALAGEDLIGQARTGMGKTFAFGVPLLQRITTDTER--PLTG 61
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFD-----VYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
RA LV++PTREL QVH+D + G L+ +YGG PY Q L+KG
Sbjct: 62 IPRA---LVVVPTRELCLQVHDDLATAAKYLKAGDRKLSVVSIYGGRPYEPQIEALQKGA 118
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
DVV+GTPGR+ D ++ ++ L L VLDEADEML +GF+ D+E IL ++ + K Q +
Sbjct: 119 DVVVGTPGRLLDLAQQNHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIPE--KRQAM 176
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P + ++ F+ I + + V + + ++I I++
Sbjct: 177 LFSATMPDPIITLARTFMNQPTH-IRAEAPQSSAVHDKTKQFVYRAHALDKVEMISRILQ 235
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G T+IFT TK +A ++AD L A+HGD+ Q RE L FR+G+ LV
Sbjct: 236 ARGRGA-TMIFTRTKRTAQKVADELAERGFAVGAVHGDLGQVAREKALKAFRAGEIDVLV 294
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PRKSSV 470
AT+VAARG+DI DV +I + P D +AY+HR GRTGRAG TGVA+ L D PR +
Sbjct: 295 ATDVAARGIDIEDVTHVINYQIPEDEQAYVHRIGRTGRAGRTGVAITLVDWDELPRWEMI 354
Query: 471 SK 472
K
Sbjct: 355 DK 356
>gi|299117107|emb|CBN73878.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 467
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 134/357 (37%), Positives = 215/357 (60%), Gaps = 14/357 (3%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
LRE LK +G PIQ+ + M L G D+VG + TG GKTLAF+LP + + P
Sbjct: 73 LREVLK-QGFPKPTPIQSQGWPMALLGRDMVGISATGSGKTLAFLLPAMIHINAQPYLEQ 131
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
G P VLV+ PTRELA Q+ E+ D +GG+ + + C+YGG P +Q + L +G++
Sbjct: 132 -----GDGPIVLVVAPTRELAVQIKEECDKFGGSSDIKNTCVYGGVPKRSQVYDLSRGVE 186
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
+VI TPGR+ D +E G +L + + VLDEAD ML MGF + I+ ++ QTL+
Sbjct: 187 IVIATPGRLIDLLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRSIVSQIRPDR--QTLM 244
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
+SAT P V+ ++ FL++ + VG+ ++ A+ +++ +V + +V+ ++
Sbjct: 245 WSATWPKEVEGLARDFLRNYYQVT--VGSLELSANKDIQQVVEIVEDFGKYRVLAKHLQE 302
Query: 360 YSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
+++ GR +IF ETK+ L L A A+HGD QS+R+ L F+ G+ + LVA
Sbjct: 303 HNNAGRVLIFVETKKGCDALTRSLRHEGWPALAIHGDKNQSERDRVLHDFKEGRSLILVA 362
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
T+VAARGLD+ D++++I + P+++E+Y+HR GR GRAG+ G A+ + + S ++
Sbjct: 363 TDVAARGLDVKDIRMVINFDFPKEMESYVHRIGRCGRAGHKGTAISFFAGKNSKCAR 419
>gi|56478694|ref|YP_160283.1| ATP-dependent RNA helicase DeaD [Aromatoleum aromaticum EbN1]
gi|56314737|emb|CAI09382.1| ATP-dependent RNA helicase DeaD [Aromatoleum aromaticum EbN1]
Length = 658
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 152/382 (39%), Positives = 211/382 (55%), Gaps = 29/382 (7%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ PL + L G E+ PIQA+ +L G DL+G A+TG GKT AF LP+L+ L
Sbjct: 51 LRAPLLDALSEIGYETPSPIQAICIPHLLAGHDLLGEAQTGTGKTAAFALPLLDRLDLA- 109
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
+ P VLVL PTRELA QV E F Y + G +YGG Q +L
Sbjct: 110 ---------VKNPQVLVLAPTRELAIQVAEAFQRYAKNLPGFHVLPVYGGQSMVVQLRQL 160
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
+G V++GTPGR+ DHIER +++L SL VLDEADEMLRMGF++DVE IL +
Sbjct: 161 ARGAHVIVGTPGRVMDHIERKSLNLDSLTTLVLDEADEMLRMGFIDDVEWILQHT--PAE 218
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV----RHIVLPCSSSARS 350
QT LFSAT+P ++ ++ ++L+ ++ K+KAST R S + +
Sbjct: 219 RQTALFSATMPDAIRRVAHRYLREPREV-------KIKASTTTVSTTRQRYCQISVAHKL 271
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFR 406
+ I+ IIF TK + +LAD L A AL+GD+ Q RE + +
Sbjct: 272 DALTRILEVEEDFDAAIIFVRTKTATVELADKLEARGYSAAALNGDMTQQLRERVIEQLK 331
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
G+ +VAT+VAARGLD++ + +I + P D EAY+HR GRTGRAG TG A++ PR
Sbjct: 332 GGQLDIVVATDVAARGLDVSRISHVINYDIPYDTEAYVHRIGRTGRAGRTGSAILFVAPR 391
Query: 467 KSSVSK-IERESGVKFEHISAP 487
+ + K IER + E + P
Sbjct: 392 EMRMLKVIERATRQPIEALQLP 413
>gi|114564866|ref|YP_752380.1| DEAD/DEAH box helicase [Shewanella frigidimarina NCIMB 400]
gi|114336159|gb|ABI73541.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
NCIMB 400]
Length = 634
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 159/434 (36%), Positives = 237/434 (54%), Gaps = 25/434 (5%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S L L G E+ PIQA + D ++ G D++G+A+TG GKT AF LP+L
Sbjct: 12 LSESLLRSLDELGYENPTPIQAASIDPLMAGKDIIGQAQTGTGKTGAFALPLL------- 64
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
K K AP +LVL PTRELA QV E F Y + G +YGG Q L
Sbjct: 65 NKIDMKIN---APQILVLAPTRELAVQVAEAFGSYAKFMKGFHVLPIYGGQSMQQQLNAL 121
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL-GKVEDAN 293
K+G V++GTPGR+ DH+ RG + L +LK VLDEADEML+MGF++D+E +L K D+
Sbjct: 122 KRGPQVIVGTPGRVMDHMRRGTLKLDNLKALVLDEADEMLKMGFIDDIEWVLEHKPADS- 180
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
Q LFSAT+P +K ++ K L S+ I + ++ S + R++ + S + + +
Sbjct: 181 --QLALFSATMPEQIKRVAAKHL-SNPVNISIASSQTTVESIDQRYVQV--SQHNKLEAL 235
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409
++ ++ G IIF T+ S +LA+ L + LHGD+ Q RE + + GK
Sbjct: 236 VRVLEVENTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKRGK 294
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS 469
L+AT+VAARGLD+ + ++ + P D EAY+HR GRTGRAG TG+A++ R+
Sbjct: 295 LDILIATDVAARGLDVERIGHVVNYDIPYDSEAYVHRIGRTGRAGRTGMAILFVTNREMR 354
Query: 470 VSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGL 528
+ + IER + + + P P +A+ E I + + + K+A EL +
Sbjct: 355 MLRTIERATNSRISPMKVPSPESVAERRLSRLGEQIQETINGDLDFMKNAVAELCQQLEV 414
Query: 529 SAAELLAKALAKAV 542
+LLA AL + V
Sbjct: 415 D-TDLLAAALLQQV 427
>gi|21673432|ref|NP_661497.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
gi|21646533|gb|AAM71839.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
Length = 657
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 151/392 (38%), Positives = 217/392 (55%), Gaps = 25/392 (6%)
Query: 105 SEHPNAVSRFR---ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTL 161
SE + FR ++ PL L++ G E+ PIQA T ++L+G D++G+A+TG GKT
Sbjct: 20 SEQQDNSVNFRSLELAEPLLRALEAVGYENPTPIQASTIPLLLEGRDVLGQAQTGTGKTA 79
Query: 162 AFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCC 220
AF LP+L ++ T P LVL PTRELA QV E F Y + G
Sbjct: 80 AFALPVLSNIDLSATD----------PQALVLAPTRELAIQVAEAFHTYAEFMPGFHVLP 129
Query: 221 LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVE 280
+YGG Y Q LK+G+ VV+GTPGR+ DH+ +G ++L +LK VLDEADEMLRMGF++
Sbjct: 130 IYGGQDYGVQIRNLKRGVHVVVGTPGRVMDHMRKGTLNLDNLKCLVLDEADEMLRMGFID 189
Query: 281 DVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340
DVE IL + ++ +V LFSAT+P + I+ K+LK+ ++ K +R
Sbjct: 190 DVEWILDQTPESRQVA--LFSATMPQPIVRIARKYLKA---PAEITIQTKTTTVETIRQR 244
Query: 341 VLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQS 396
+ + I+ G IIF TK LA+ L A AL+GD+ QS
Sbjct: 245 YWMVGGHHKLDALTRILEVEPFDG-IIIFVRTKTETVALAEKLQARGYAAAALNGDMVQS 303
Query: 397 QREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNT 456
RE T+ + G ++AT+VAARGLD+ + +I + P D E+Y+HR GRTGRAG +
Sbjct: 304 ARERTIEQLKDGTLNIVIATDVAARGLDVERISHVINYDIPTDTESYVHRIGRTGRAGRS 363
Query: 457 GVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487
G A++ PR + + IER + + E + P
Sbjct: 364 GEAILFVSPRERGMLFAIERATRKRIELMELP 395
>gi|302307229|ref|NP_983823.2| ADL273Cp [Ashbya gossypii ATCC 10895]
gi|442570182|sp|Q75B50.2|DED1_ASHGO RecName: Full=ATP-dependent RNA helicase DED1
gi|299788899|gb|AAS51647.2| ADL273Cp [Ashbya gossypii ATCC 10895]
gi|374107035|gb|AEY95943.1| FADL273Cp [Ashbya gossypii FDAG1]
Length = 623
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 149/379 (39%), Positives = 213/379 (56%), Gaps = 19/379 (5%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLF----PIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
P+ ++ F S PL E L + F P+Q + +V G DL+ A+TG GKT F
Sbjct: 142 PDPITEF-TSPPLDELLLENIKLARFTKPTPVQKYSVPIVAKGRDLMACAQTGSGKTGGF 200
Query: 164 VLPIL-ESLTNGPTKASKKTGYGR---APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC 219
+ P+L +S +NGP ++GY P+ +VL PTRELA Q+ ++ + + C
Sbjct: 201 LFPVLSQSFSNGPASTPDESGYYMRKAYPTAVVLAPTRELATQIFDEAKKFTYRSWVKPC 260
Query: 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV 279
+YGGA Q +L++G D+++ TPGR+ D +ERG I L S+K+ VLDEAD ML MGF
Sbjct: 261 VVYGGADIRQQIRELERGCDLIVATPGRLNDLLERGKISLCSVKYLVLDEADRMLDMGFE 320
Query: 280 EDVELILGKVE--DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337
+ I+ + QTL+FSAT P+ ++H++ FLK I L S N+
Sbjct: 321 PQIRHIVEGCDMPTVENRQTLMFSATFPTDIQHLAADFLKD---YIFLSVGRVGSTSENI 377
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDI 393
VL + V+ D++ S GG T++F ETK A L D L A A+HGD
Sbjct: 378 TQKVLHVEDIDKRSVLLDLLAA-SDGGLTLVFVETKRMADALTDFLIMQNLSATAIHGDR 436
Query: 394 QQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA 453
Q++RE LA FR+G+ LVAT VAARGLDI +V +I + P D++ Y+HR GRTGRA
Sbjct: 437 TQAERERALAFFRTGRANVLVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRA 496
Query: 454 GNTGVAVMLYDPRKSSVSK 472
GNTG+A ++ +V K
Sbjct: 497 GNTGLATAFFNRGNKNVVK 515
>gi|379715095|ref|YP_005303432.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 316]
gi|387140417|ref|YP_005696395.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 1/06-A]
gi|355392208|gb|AER68873.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 1/06-A]
gi|377653801|gb|AFB72150.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 316]
Length = 660
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 148/399 (37%), Positives = 233/399 (58%), Gaps = 27/399 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T ++++G D++G A+TG GKT AF LPIL + KK R
Sbjct: 85 GFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTAAFALPILSRIN------VKK----RH 134
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P L+L PTRELA QV + F + +G + +YGG Y Q L++G +++GTPG
Sbjct: 135 PQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRRGAQIIVGTPG 194
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED--ANKVQTLLFSATL 304
R+ DH+E+G++D+S+L + VLDEADEML MGF ED+E IL ED A+K Q LFSAT+
Sbjct: 195 RVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERIL---EDTPADK-QVALFSATM 250
Query: 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
P+ ++ +S +++K D + I + + + +TN+ L + + + I+
Sbjct: 251 PNGIRRLSKQYMK-DPREIQV--KSETRTNTNITQRFLNVAHRNKLDALTRILEVTEFEA 307
Query: 365 RTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
I+F TK ++A+ L A A++GDI Q+QRE T+ + G+ LVAT+VAA
Sbjct: 308 -MIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 366
Query: 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGV 479
RGLD+ + + + P D E+Y+HR GRTGRAG +G A++ PR + + IER +
Sbjct: 367 RGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNA 426
Query: 480 KFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKS 517
+ + P ++ ++ + A++IT+ + DS + F++
Sbjct: 427 ELIEMDLPTVDEVNESRKEKFADSITESLEDSQVAIFRN 465
>gi|329895875|ref|ZP_08271203.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC3088]
gi|328922093|gb|EGG29452.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC3088]
Length = 515
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 148/382 (38%), Positives = 225/382 (58%), Gaps = 22/382 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L++ L G E IQ T +L+G D++G+A+TG GKT AF LPIL +
Sbjct: 19 LQKALDDVGYEVPSDIQTKTIPPLLEGCDVIGQAQTGTGKTAAFALPILAKIDC----RK 74
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGI 238
K+T LVL PTRELA QV E F Y + G +YGG Y Q +L++G
Sbjct: 75 KQT------QCLVLAPTRELAIQVAEAFQSYARHLPGFQVAPIYGGTDYRTQLKQLERGA 128
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
V++GTPGR+ DH+ +G++ L +L VLDEADEMLRMGF++DVE ++ ++ + K Q
Sbjct: 129 QVIVGTPGRVMDHMRKGSLKLDNLAHLVLDEADEMLRMGFIDDVEWVMSQLPE--KRQIA 186
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P+ ++ I++ +L+ D + I + +K +T++R V S +++ + I+
Sbjct: 187 LFSATMPTAIRRIASDYLQ-DPQHITV--TQKTVTATSIRQRVWMISGASKLDGLTRILE 243
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G IIF TK + ++LAD L A AL+GD+ QS RE ++ + G+ +V
Sbjct: 244 VEDFDG-LIIFARTKIATTELADKLQARGFAAAALNGDMAQSAREQVISQLKKGRLDIVV 302
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-I 473
AT+VAARGLD++ + ++ + P+D EAY+HR GRTGRAG G A++ R+ + + I
Sbjct: 303 ATDVAARGLDVDRITHVVNYDIPQDPEAYVHRIGRTGRAGRKGEAILFAANREQRLLRMI 362
Query: 474 ERESGVKFEHISAPQPADIAKA 495
ER +G E + P +D+A A
Sbjct: 363 ERTTGQPIELMRLPTASDVADA 384
>gi|149907510|ref|ZP_01896257.1| Helicase [Moritella sp. PE36]
gi|149809180|gb|EDM69109.1| Helicase [Moritella sp. PE36]
Length = 615
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 153/386 (39%), Positives = 217/386 (56%), Gaps = 29/386 (7%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
P+ + L G E+ PIQA ++ +G D++G A+TG GKT AF LP+L ++ TK
Sbjct: 18 PILQVLNDLGYEAPTPIQAECIPLLQNGGDVLGMAQTGTGKTAAFALPLLSNIDTALTK- 76
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKG 237
P +LVL PTRELA QV E F Y + G +YGG Y Q LK+
Sbjct: 77 ---------PQILVLAPTRELAIQVAEAFQTYSRHMRGFHVLPIYGGQSYPIQLKALKRN 127
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
V++GTPGR+ DHI RG +DLS +K VLDEADEMLRMGF++DVE IL K + Q
Sbjct: 128 PQVIVGTPGRVIDHINRGTLDLSGIKALVLDEADEMLRMGFIDDVESILSKT--PAERQM 185
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC----SSSARSQVI 353
LFSAT+P ++ I+ +F+ ++ ++ + K ST V +I C A+ +
Sbjct: 186 ALFSATMPEEIRRITKRFM-TNPTSVKIAN----KTST-VENIEQKCLIIGGLQAKLDGL 239
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGK 409
I+ G IIF TK +LA+ L A AL+GD+ Q+ RE T++ +SG+
Sbjct: 240 TRILETEDYDG-VIIFARTKTMTVELAEKLEARGYSAAALNGDLNQAMRERTVSRLKSGQ 298
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS 469
++AT+VAARGLD+ + L+I + P D E+Y+HR GRTGRAG G A++ PR+
Sbjct: 299 LDIVIATDVAARGLDVPRIDLVINYDIPTDTESYVHRIGRTGRAGRKGTAILFAAPRERR 358
Query: 470 VSK-IERESGVKFEHISAPQPADIAK 494
+ K IER + + P D+ K
Sbjct: 359 LLKAIERATRQPLTMMDLPSRDDVTK 384
>gi|452851771|ref|YP_007493455.1| DEAD/DEAH box helicase domain protein [Desulfovibrio piezophilus]
gi|451895425|emb|CCH48304.1| DEAD/DEAH box helicase domain protein [Desulfovibrio piezophilus]
Length = 581
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 166/448 (37%), Positives = 248/448 (55%), Gaps = 29/448 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGS-DLVGRARTGQGKTLAFVLPILESLTNGPTKASK 180
E L+SKG ES PIQ T ++L G+ D+VG+A+TG GKT AF LPI+E++ +
Sbjct: 45 EALESKGFESPTPIQERTIPLLLQGNIDIVGQAQTGTGKTAAFGLPIIETV-------QE 97
Query: 181 KTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDV 240
K G +A L+L PTRELA QV ++ + G + +YGG H Q LK+G+DV
Sbjct: 98 KGGRVQA---LILTPTRELAIQVADEINSLKGNKRIRIIPVYGGQAIHMQFKALKRGVDV 154
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
++GTPGRI DH++RG + L L F VLDEADEM MGFV+DV IL + TLLF
Sbjct: 155 IVGTPGRIMDHMKRGTLKLDQLDFFVLDEADEMCNMGFVDDVREILASANTDRR--TLLF 212
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P V I+T+F++ D +T+ + + S +RHI + S R + + +I
Sbjct: 213 SATMPREVMRIATEFMR-DYETVTVKTTK--NDSPLIRHIFHEMADSDRFEALCRVIDAQ 269
Query: 361 SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
++FT T+ A +A+ L A +HG+I Q++RE L FR + LVAT
Sbjct: 270 PE-FYGLVFTRTRADADTVAERLNERGYPAEPIHGEISQNRREDILNRFRRRRATILVAT 328
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK-SSVSKIER 475
+VAARG+D+ D+ ++ P+D ++HR+GRTGRAG G+A+ L P + + I +
Sbjct: 329 DVAARGIDVPDLTHVVNFALPQDPPTFVHRTGRTGRAGKEGIAITLITPNEFRRLMYITK 388
Query: 476 ESGVKFEHISAPQPADIA---KAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAE 532
SG++ P+ D+ K+ V E+I D A++ A+EL++ AE
Sbjct: 389 SSGIEISKEKLPRIQDVIYSKKSRMVTKLESIMAEDDH--SAYQPMAKELMSEQ--DPAE 444
Query: 533 LLAKALAKAVVSAFLFSSSSNSLSLTSG 560
++A L + SS ++T G
Sbjct: 445 IIAALLRHTFGDELVESSYKEIDTITQG 472
>gi|389850156|ref|YP_006352391.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 258]
gi|388247462|gb|AFK16453.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 258]
Length = 660
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 148/399 (37%), Positives = 233/399 (58%), Gaps = 27/399 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T ++++G D++G A+TG GKT AF LPIL + KK R
Sbjct: 85 GFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTAAFALPILSRIN------VKK----RH 134
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P L+L PTRELA QV + F + +G + +YGG Y Q L++G +++GTPG
Sbjct: 135 PQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRRGAQIIVGTPG 194
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED--ANKVQTLLFSATL 304
R+ DH+E+G++D+S+L + VLDEADEML MGF ED+E IL ED A+K Q LFSAT+
Sbjct: 195 RVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERIL---EDTPADK-QVALFSATM 250
Query: 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
P+ ++ +S +++K D + I + + + +TN+ L + + + I+
Sbjct: 251 PNGIRRLSKQYMK-DPREIQV--KSETRTNTNITQRFLNVAHRNKLDALTRILEVTEFEA 307
Query: 365 RTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
I+F TK ++A+ L A A++GDI Q+QRE T+ + G+ LVAT+VAA
Sbjct: 308 -MIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 366
Query: 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGV 479
RGLD+ + + + P D E+Y+HR GRTGRAG +G A++ PR + + IER +
Sbjct: 367 RGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNA 426
Query: 480 KFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKS 517
+ + P ++ ++ + A++IT+ + DS + F++
Sbjct: 427 ELIEMDLPTVDEVNESRKEKFADSITESLEDSQVAIFRN 465
>gi|375137560|ref|YP_004998209.1| DNA/RNA helicase [Mycobacterium rhodesiae NBB3]
gi|359818181|gb|AEV70994.1| DNA/RNA helicase, superfamily II [Mycobacterium rhodesiae NBB3]
Length = 494
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 149/374 (39%), Positives = 212/374 (56%), Gaps = 36/374 (9%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G E F IQ +T + L G DL+G+ARTG GKTLAF +P+L+ +T P K + +G
Sbjct: 21 LSEDGKEHPFAIQELTMPLALAGDDLIGQARTGMGKTLAFGVPLLQRITTDPEK--ELSG 78
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDV------YGGAVGLTS---------CCLYGGAPYH 228
RA LV++PTREL QVH D + GGA TS +YGG PY
Sbjct: 79 IPRA---LVVVPTRELCLQVHSDLSIAAKYLTTGGAPAPTSGTADRKLVVTSIYGGRPYE 135
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q L+KG+DVV+GTPGR+ D ++G++ L L VLDEADEML +GF+ D+E IL +
Sbjct: 136 PQIEALQKGVDVVVGTPGRLLDLAQQGHLQLGGLSMLVLDEADEMLDLGFLPDIERILRQ 195
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVLPCSS 346
+ Q +LFSAT+P + ++ F+ + + A+T+ +
Sbjct: 196 IP--TDRQAMLFSATMPDPIITLARTFMN---QPTHIRAEAPHSAATHDTTEQFAYRAHA 250
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTL 402
+ +++ I++ G T+IFT TK +A +++D L A+HGD+ Q RE L
Sbjct: 251 LDKVEMVARILQAEGRGA-TMIFTRTKRTAQKVSDELAERGFKVGAVHGDLGQGAREKAL 309
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
FR+G LVAT+VAARG+DI+D+ +I + P D +AY+HR GRTGRAG TG+AV L
Sbjct: 310 KSFRTGDIDVLVATDVAARGIDIDDITHVINYQIPEDEQAYVHRIGRTGRAGKTGIAVTL 369
Query: 463 YD----PRKSSVSK 472
D PR + + K
Sbjct: 370 VDWDELPRWTMIDK 383
>gi|407794038|ref|ZP_11141068.1| ATP-dependent RNA helicase [Idiomarina xiamenensis 10-D-4]
gi|407213891|gb|EKE83744.1| ATP-dependent RNA helicase [Idiomarina xiamenensis 10-D-4]
Length = 605
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 146/384 (38%), Positives = 223/384 (58%), Gaps = 22/384 (5%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ V + ++L+ G PIQA + ++LDG+D++G A+TG GKT AF LP L S+ +
Sbjct: 15 LPVVVLDRLQQLGFTQPTPIQAQSIPVLLDGADVLGEAQTGTGKTAAFGLPAL-SMVDAS 73
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKL 234
A++ VLV+ PTRELA QV + D G L +YGGAP+ Q L
Sbjct: 74 QAATQ---------VLVVTPTRELAIQVADALTDFSRGMARLQVTTVYGGAPFAPQIKAL 124
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
K G VV+GTPGR+ D + +G + L L+ VLDEADEML MGF+ED+E I+ V D+
Sbjct: 125 KGGAQVVVGTPGRLIDLLNKGVLRLDKLRMAVLDEADEMLNMGFIEDIEAIMTAVPDS-- 182
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
Q LFSAT+P+ ++ ++ +FL+ D I + ++ KAS +R + S + +
Sbjct: 183 AQRTLFSATMPTQIRKLAQRFLR-DSVNIRIETAKQDKAS--IRQLAWQVSVLHKMTALT 239
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKF 410
++ R ++F T++ ++A+ L G A AL+GD+ Q+QRE T+ RSG
Sbjct: 240 RLLETMDYQ-RVLVFVRTRQDTMEVAEQLQGQGFKAAALNGDLNQAQREQTVNQLRSGHI 298
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 470
LVAT+V ARGLD+ ++ +I + P D E+Y+HR GRTGRAG +G A++ + PR+ +
Sbjct: 299 EILVATDVVARGLDVPEITHVINYDLPGDHESYVHRIGRTGRAGRSGEAILFFRPRERHL 358
Query: 471 SK-IERESGVKFEHISAPQPADIA 493
K ER + + E+ P A ++
Sbjct: 359 LKHYERATNSRIEYFEVPTAAQLS 382
>gi|392400358|ref|YP_006436958.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis Cp162]
gi|390531436|gb|AFM07165.1| DEAD-box helicase [Corynebacterium pseudotuberculosis Cp162]
Length = 660
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 148/399 (37%), Positives = 233/399 (58%), Gaps = 27/399 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T ++++G D++G A+TG GKT AF LPIL + KK R
Sbjct: 85 GFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTAAFALPILSRIN------VKK----RH 134
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P L+L PTRELA QV + F + +G + +YGG Y Q L++G +++GTPG
Sbjct: 135 PQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRRGAQIIVGTPG 194
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED--ANKVQTLLFSATL 304
R+ DH+E+G++D+S+L + VLDEADEML MGF ED+E IL ED A+K Q LFSAT+
Sbjct: 195 RVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERIL---EDTPADK-QVALFSATM 250
Query: 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
P+ ++ +S +++K D + I + + + +TN+ L + + + I+
Sbjct: 251 PNGIRRLSKQYMK-DPREIQV--KSETRTNTNITQRFLNVAHRNKLDALTRILEVTEFEA 307
Query: 365 RTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
I+F TK ++A+ L A A++GDI Q+QRE T+ + G+ LVAT+VAA
Sbjct: 308 -MIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 366
Query: 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGV 479
RGLD+ + + + P D E+Y+HR GRTGRAG +G A++ PR + + IER +
Sbjct: 367 RGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNA 426
Query: 480 KFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKS 517
+ + P ++ ++ + A++IT+ + DS + F++
Sbjct: 427 ELIEMDLPTVDEVNESRKEKFADSITESLEDSQVAIFRN 465
>gi|386740147|ref|YP_006213327.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 31]
gi|384476841|gb|AFH90637.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 31]
Length = 660
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 148/399 (37%), Positives = 233/399 (58%), Gaps = 27/399 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T ++++G D++G A+TG GKT AF LPIL + KK R
Sbjct: 85 GFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTAAFALPILSRIN------VKK----RH 134
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P L+L PTRELA QV + F + +G + +YGG Y Q L++G +++GTPG
Sbjct: 135 PQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRRGAQIIVGTPG 194
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED--ANKVQTLLFSATL 304
R+ DH+E+G++D+S+L + VLDEADEML MGF ED+E IL ED A+K Q LFSAT+
Sbjct: 195 RVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERIL---EDTPADK-QVALFSATM 250
Query: 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
P+ ++ +S +++K D + I + + + +TN+ L + + + I+
Sbjct: 251 PNGIRRLSKQYMK-DPREIQV--KSETRTNTNITQRFLNVAHRNKLDALTRILEVTEFEA 307
Query: 365 RTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
I+F TK ++A+ L A A++GDI Q+QRE T+ + G+ LVAT+VAA
Sbjct: 308 -MIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 366
Query: 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGV 479
RGLD+ + + + P D E+Y+HR GRTGRAG +G A++ PR + + IER +
Sbjct: 367 RGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNA 426
Query: 480 KFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKS 517
+ + P ++ ++ + A++IT+ + DS + F++
Sbjct: 427 ELIEMDLPTVDEVNESRKEKFADSITESLEDSQVAIFRN 465
>gi|383313989|ref|YP_005374844.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis P54B96]
gi|380869490|gb|AFF21964.1| DEAD-box helicase [Corynebacterium pseudotuberculosis P54B96]
Length = 638
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 148/399 (37%), Positives = 233/399 (58%), Gaps = 27/399 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T ++++G D++G A+TG GKT AF LPIL + KK R
Sbjct: 85 GFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTAAFALPILSRIN------VKK----RH 134
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P L+L PTRELA QV + F + +G + +YGG Y Q L++G +++GTPG
Sbjct: 135 PQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRRGAQIIVGTPG 194
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED--ANKVQTLLFSATL 304
R+ DH+E+G++D+S+L + VLDEADEML MGF ED+E IL ED A+K Q LFSAT+
Sbjct: 195 RVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERIL---EDTPADK-QVALFSATM 250
Query: 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
P+ ++ +S +++K D + I + + + +TN+ L + + + I+
Sbjct: 251 PNGIRRLSKQYMK-DPREIQV--KSETRTNTNITQRFLNVAHRNKLDALTRILEVTEFEA 307
Query: 365 RTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
I+F TK ++A+ L A A++GDI Q+QRE T+ + G+ LVAT+VAA
Sbjct: 308 -MIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 366
Query: 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGV 479
RGLD+ + + + P D E+Y+HR GRTGRAG +G A++ PR + + IER +
Sbjct: 367 RGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNA 426
Query: 480 KFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKS 517
+ + P ++ ++ + A++IT+ + DS + F++
Sbjct: 427 ELIEMDLPTVDEVNESRKEKFADSITESLEDSQVAIFRN 465
>gi|387136343|ref|YP_005692323.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 42/02-A]
gi|348606788|gb|AEP70061.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 42/02-A]
Length = 659
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 148/399 (37%), Positives = 233/399 (58%), Gaps = 27/399 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T ++++G D++G A+TG GKT AF LPIL + KK R
Sbjct: 85 GFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTAAFALPILSRIN------VKK----RH 134
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P L+L PTRELA QV + F + +G + +YGG Y Q L++G +++GTPG
Sbjct: 135 PQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRRGAQIIVGTPG 194
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED--ANKVQTLLFSATL 304
R+ DH+E+G++D+S+L + VLDEADEML MGF ED+E IL ED A+K Q LFSAT+
Sbjct: 195 RVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERIL---EDTPADK-QVALFSATM 250
Query: 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
P+ ++ +S +++K D + I + + + +TN+ L + + + I+
Sbjct: 251 PNGIRRLSKQYMK-DPREIQV--KSETRTNTNITQRFLNVAHRNKLDALTRILEVTEFEA 307
Query: 365 RTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
I+F TK ++A+ L A A++GDI Q+QRE T+ + G+ LVAT+VAA
Sbjct: 308 -MIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 366
Query: 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGV 479
RGLD+ + + + P D E+Y+HR GRTGRAG +G A++ PR + + IER +
Sbjct: 367 RGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNA 426
Query: 480 KFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKS 517
+ + P ++ ++ + A++IT+ + DS + F++
Sbjct: 427 ELIEMDLPTVDEVNESRKEKFADSITESLEDSQVAIFRN 465
>gi|384506502|ref|YP_005683171.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis C231]
gi|302205951|gb|ADL10293.1| DEAD-box helicase [Corynebacterium pseudotuberculosis C231]
Length = 650
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 148/399 (37%), Positives = 233/399 (58%), Gaps = 27/399 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T ++++G D++G A+TG GKT AF LPIL + KK R
Sbjct: 85 GFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTAAFALPILSRIN------VKK----RH 134
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P L+L PTRELA QV + F + +G + +YGG Y Q L++G +++GTPG
Sbjct: 135 PQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRRGAQIIVGTPG 194
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED--ANKVQTLLFSATL 304
R+ DH+E+G++D+S+L + VLDEADEML MGF ED+E IL ED A+K Q LFSAT+
Sbjct: 195 RVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERIL---EDTPADK-QVALFSATM 250
Query: 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
P+ ++ +S +++K D + I + + + +TN+ L + + + I+
Sbjct: 251 PNGIRRLSKQYMK-DPREIQV--KSETRTNTNITQRFLNVAHRNKLDALTRILEVTEFEA 307
Query: 365 RTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
I+F TK ++A+ L A A++GDI Q+QRE T+ + G+ LVAT+VAA
Sbjct: 308 -MIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 366
Query: 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGV 479
RGLD+ + + + P D E+Y+HR GRTGRAG +G A++ PR + + IER +
Sbjct: 367 RGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNA 426
Query: 480 KFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKS 517
+ + P ++ ++ + A++IT+ + DS + F++
Sbjct: 427 ELIEMDLPTVDEVNESRKEKFADSITESLEDSQVAIFRN 465
>gi|300858229|ref|YP_003783212.1| hypothetical protein cpfrc_00811 [Corynebacterium
pseudotuberculosis FRC41]
gi|375288396|ref|YP_005122937.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 3/99-5]
gi|384504410|ref|YP_005681080.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 1002]
gi|384508590|ref|YP_005685258.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis I19]
gi|384510681|ref|YP_005690259.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis PAT10]
gi|300685683|gb|ADK28605.1| hypothetical protein cpfrc_00811 [Corynebacterium
pseudotuberculosis FRC41]
gi|302330505|gb|ADL20699.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 1002]
gi|308276186|gb|ADO26085.1| DEAD-box helicase [Corynebacterium pseudotuberculosis I19]
gi|341824620|gb|AEK92141.1| DEAD-box helicase [Corynebacterium pseudotuberculosis PAT10]
gi|371575685|gb|AEX39288.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 3/99-5]
Length = 660
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 148/399 (37%), Positives = 233/399 (58%), Gaps = 27/399 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T ++++G D++G A+TG GKT AF LPIL + KK R
Sbjct: 85 GFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTAAFALPILSRIN------VKK----RH 134
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P L+L PTRELA QV + F + +G + +YGG Y Q L++G +++GTPG
Sbjct: 135 PQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRRGAQIIVGTPG 194
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED--ANKVQTLLFSATL 304
R+ DH+E+G++D+S+L + VLDEADEML MGF ED+E IL ED A+K Q LFSAT+
Sbjct: 195 RVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERIL---EDTPADK-QVALFSATM 250
Query: 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
P+ ++ +S +++K D + I + + + +TN+ L + + + I+
Sbjct: 251 PNGIRRLSKQYMK-DPREIQV--KSETRTNTNITQRFLNVAHRNKLDALTRILEVTEFEA 307
Query: 365 RTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
I+F TK ++A+ L A A++GDI Q+QRE T+ + G+ LVAT+VAA
Sbjct: 308 -MIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 366
Query: 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGV 479
RGLD+ + + + P D E+Y+HR GRTGRAG +G A++ PR + + IER +
Sbjct: 367 RGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNA 426
Query: 480 KFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKS 517
+ + P ++ ++ + A++IT+ + DS + F++
Sbjct: 427 ELIEMDLPTVDEVNESRKEKFADSITESLEDSQVAIFRN 465
>gi|418047503|ref|ZP_12685591.1| DEAD/DEAH box helicase domain protein [Mycobacterium rhodesiae
JS60]
gi|353193173|gb|EHB58677.1| DEAD/DEAH box helicase domain protein [Mycobacterium rhodesiae
JS60]
Length = 503
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 151/380 (39%), Positives = 212/380 (55%), Gaps = 27/380 (7%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L +G E F IQ T M L G DL+G+ARTG GKTLAF +P+L +T +
Sbjct: 25 LAEEGKEYAFAIQEQTLPMALAGDDLIGQARTGMGKTLAFGVPLLHRITTDTERPLSGI- 83
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG------LTSCCLYGGAPYHAQEFKLKKG 237
P LV++PTREL QVH D + LT +YGG PY Q L+KG
Sbjct: 84 ----PRALVVVPTRELCLQVHGDLVAAAKYLQADESRKLTVTAIYGGRPYEPQIEALQKG 139
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
+DVV+GTPGR+ D ++G++ L L VLDEADEML +GF+ D+E IL ++ + K Q
Sbjct: 140 VDVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILKQIPE--KRQA 197
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
+LFSAT+P + ++ F+ I G + V + + +++ I+
Sbjct: 198 MLFSATMPDPIITLARTFMNQPTH-IRAEGVQGAATHDTTEQFVYRAHALDKVEMVSRIL 256
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGDIQQSQREVTLAGFRSGKFMT 412
+ G T+IFT TK +A ++AD L G R A+HGD+ Q RE L FR+G
Sbjct: 257 QAQGRGA-TMIFTRTKRTAQKVADEL-GERGFKVGAVHGDLGQIAREKALKAFRTGDVDV 314
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
LVAT+VAARG+DI+D+ +I + P D +AY+HR GRTGRAG TG+A+ L D +
Sbjct: 315 LVATDVAARGIDIDDITHVINYQIPEDEQAYVHRIGRTGRAGKTGIAITLVD-----WDE 369
Query: 473 IERESGV-KFEHISAPQPAD 491
+ER S + K + P PA+
Sbjct: 370 LERWSMIDKALKLDCPDPAE 389
>gi|385807275|ref|YP_005843672.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 267]
gi|383804668|gb|AFH51747.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 267]
Length = 662
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 148/399 (37%), Positives = 233/399 (58%), Gaps = 27/399 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T ++++G D++G A+TG GKT AF LPIL + KK R
Sbjct: 85 GFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTAAFALPILSRIN------VKK----RH 134
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P L+L PTRELA QV + F + +G + +YGG Y Q L++G +++GTPG
Sbjct: 135 PQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRRGAQIIVGTPG 194
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED--ANKVQTLLFSATL 304
R+ DH+E+G++D+S+L + VLDEADEML MGF ED+E IL ED A+K Q LFSAT+
Sbjct: 195 RVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERIL---EDTPADK-QVALFSATM 250
Query: 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
P+ ++ +S +++K D + I + + + +TN+ L + + + I+
Sbjct: 251 PNGIRRLSKQYMK-DPREIQV--KSETRTNTNITQRFLNVAHRNKLDALTRILEVTEFEA 307
Query: 365 RTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
I+F TK ++A+ L A A++GDI Q+QRE T+ + G+ LVAT+VAA
Sbjct: 308 -MIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 366
Query: 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGV 479
RGLD+ + + + P D E+Y+HR GRTGRAG +G A++ PR + + IER +
Sbjct: 367 RGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNA 426
Query: 480 KFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKS 517
+ + P ++ ++ + A++IT+ + DS + F++
Sbjct: 427 ELIEMDLPTVDEVNESRKEKFADSITESLEDSQVAIFRN 465
>gi|170727862|ref|YP_001761888.1| DEAD/DEAH box helicase [Shewanella woodyi ATCC 51908]
gi|169813209|gb|ACA87793.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
51908]
Length = 413
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 143/334 (42%), Positives = 201/334 (60%), Gaps = 14/334 (4%)
Query: 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP-SVLVL 193
+QA +L GSDL+ A+TG GKT AF LPILE L+ S +T Y P L+L
Sbjct: 27 VQAEAIPAILAGSDLMAGAQTGTGKTAAFALPILERLSQ---LKSSQTSYELTPVRALIL 83
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE 253
PTRELA QVH+ F YG + L S +YGG AQ LK G+D++I TPGR+ DH+
Sbjct: 84 TPTRELALQVHQSFVRYGDGLTLKSAIVYGGVSIDAQADILKAGVDILIATPGRLLDHLR 143
Query: 254 RGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313
RG++ L+ L F V DEAD ML MGF ++++ IL ++ + QTLLFSAT V ++S
Sbjct: 144 RGSLTLTQLAFLVFDEADRMLDMGFKDEIDAILKQL--PKERQTLLFSATFDDGVFNLSK 201
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETK 373
+ LK D K I++ ++ A+ V V + +S+++ +I + +IF+ K
Sbjct: 202 RLLK-DPKLIEV--GKRNAAAGKVEQRVYAVDADRKSELLCHLI-LSKKWRQVLIFSRKK 257
Query: 374 ESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQ 429
+ A +LA L A A HGD+ QS RE L F+SG+ LVAT+VAARGLD+ ++
Sbjct: 258 QGADKLAAKLVNEGVKALAFHGDLSQSVREKVLQEFKSGELQVLVATDVAARGLDVESLE 317
Query: 430 LIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
+++ E P E Y+HR GRTGRAGN+G+A+ LY
Sbjct: 318 VVVNYELPFVAEDYVHRIGRTGRAGNSGLAITLY 351
>gi|226365826|ref|YP_002783609.1| ATP-dependent RNA helicase [Rhodococcus opacus B4]
gi|226244316|dbj|BAH54664.1| putative ATP-dependent RNA helicase [Rhodococcus opacus B4]
Length = 534
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 148/366 (40%), Positives = 208/366 (56%), Gaps = 27/366 (7%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQ +T + L G DL+G+ARTG GKT F +P+L +++G T + G
Sbjct: 53 LDEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLHRISSGTTGTAALDG 112
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV---------GLTSCCLYGGAPYHAQEFKL 234
RA LV++PTREL QV +D + GA L +YGG PY Q L
Sbjct: 113 TPRA---LVIVPTRELCIQVTKDLE---GAAKYLKGEKNKPLEVLAIYGGRPYETQIATL 166
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
+KG DVV+GTPGR+ D +G++ L ++ VLDEADEML +GF+ D+E IL V D K
Sbjct: 167 QKGADVVVGTPGRLLDLANQGHLILGKVEVLVLDEADEMLDLGFLPDIERILNMVPD--K 224
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT+LFSAT+P + ++ FL ++ +HI + +++++
Sbjct: 225 RQTMLFSATMPGPIITLARTFLTQPTHIRAEQADDSAVHDRTSQHIYR-AHALDKAEMVA 283
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410
+++ G T+IFT TK +A +++D L ++HGD+ Q RE L FRSGK
Sbjct: 284 RVLQADGRGA-TMIFTRTKRTAQKVSDELAERGFAVGSVHGDLNQVAREKALKAFRSGKI 342
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PR 466
LVAT+VAARG+DI+DV +I + P D + Y+HR GRTGRAG TG+AV L D PR
Sbjct: 343 DVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGIAVTLVDWDDIPR 402
Query: 467 KSSVSK 472
+ K
Sbjct: 403 WQLIDK 408
>gi|443673677|ref|ZP_21138733.1| putative DEAD/DEAH box helicase [Rhodococcus sp. AW25M09]
gi|443413744|emb|CCQ17071.1| putative DEAD/DEAH box helicase [Rhodococcus sp. AW25M09]
Length = 507
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 148/364 (40%), Positives = 208/364 (57%), Gaps = 24/364 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQ +T + + G DL+G+ARTG GKT F +P+L L T S T
Sbjct: 9 LSEMGIERTFAIQELTLPLAIAGDDLIGQARTGMGKTFGFGVPLLHRLA---TDNSGTTP 65
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFD----VYGGAVG-LTSCCLYGGAPYHAQEFKLKKGI 238
P L+++PTREL QV D + GA G + +YGG PY AQ L+ G+
Sbjct: 66 LDGTPRALIIVPTRELCVQVSSDLENASKYLSGANGPVKVLSIYGGRPYEAQISALQNGV 125
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
DVV+GTPGR+ D ++ ++ L + VLDEADEML +GF+ D+E ILG V D K QT+
Sbjct: 126 DVVVGTPGRLLDLAKQNHLILGKVGVLVLDEADEMLDLGFLPDIERILGMVPD--KRQTM 183
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR--HIVLPCSSSARSQVIPDI 356
LFSAT+P + ++ FL + + E ++ + R V + + +++ +
Sbjct: 184 LFSATMPGPIITLARTFLT---QPTHIRAEEAESSAVHDRTAQHVYRAHALDKVEMVAKV 240
Query: 357 IRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMT 412
++ G T++FT TK +A ++AD L A+HGD+ Q QRE L FR+GK
Sbjct: 241 LKADGRGA-TMVFTRTKRTAQKVADELAERGYSVGAVHGDLGQVQREKALKAFRTGKIDV 299
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PRKS 468
LVAT+VAARG+DI+DV +I + P D + Y+HR GRTGRAG TG+AV L D PR
Sbjct: 300 LVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGIAVTLVDWDDIPRWQ 359
Query: 469 SVSK 472
+ K
Sbjct: 360 LIDK 363
>gi|114330892|ref|YP_747114.1| DEAD/DEAH box helicase [Nitrosomonas eutropha C91]
gi|114307906|gb|ABI59149.1| DEAD/DEAH box helicase domain protein [Nitrosomonas eutropha C91]
Length = 455
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 153/366 (41%), Positives = 203/366 (55%), Gaps = 17/366 (4%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G S PIQ ++ G D++ A+TG GKT AF+LP L L P K GR
Sbjct: 20 GYTSPTPIQQQAIPELIAGHDVMASAQTGTGKTAAFMLPALHRLAT-PAKIQ-----GRG 73
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P +LVL PTRELA QV E YG + + + GG PY Q L + +DV++ TPG
Sbjct: 74 PRILVLTPTRELALQVSEAASKYGKFLPRVNVVSILGGMPYPLQNKLLSQVVDVLVATPG 133
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHIERG ID S L+ VLDEAD ML MGF+ DVE I N+ QTLLFSATL +
Sbjct: 134 RLIDHIERGRIDFSRLEMLVLDEADRMLDMGFIHDVERIASSTP-TNR-QTLLFSATLDT 191
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ I+T+ LK K+ + K+ H V + R + D + C ++ +
Sbjct: 192 AIEKIATRLLKMPKRIQIASQHAKLDHIEQRMHYVDDLTHKNR---LLDHLLCDTTIKQA 248
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+FT TK A LAD L A A+HGD+ Q +R TL G R G+ LVAT+VAARG
Sbjct: 249 IVFTATKRDADSLADNLSAQGHKAAAMHGDMTQRERTRTLTGLRQGRLKILVATDVAARG 308
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKF 481
+DI D+ +I + P+ E Y+HR GRTGRAG +G+AV + + +IER +G F
Sbjct: 309 IDIADITHVINFDLPKFAEDYVHRIGRTGRAGASGIAVSFASGKDGIHLKRIERFTGNHF 368
Query: 482 EHISAP 487
E P
Sbjct: 369 EFQVVP 374
>gi|227832855|ref|YP_002834562.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
700975]
gi|262182657|ref|ZP_06042078.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
700975]
gi|227453871|gb|ACP32624.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
700975]
Length = 669
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 154/431 (35%), Positives = 237/431 (54%), Gaps = 29/431 (6%)
Query: 65 SETSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVP--LRE 122
S+ +S+ GE ++ S+ + A + G EE S + N+ + +P ++E
Sbjct: 22 SQENSQGGEALD-ASQVSNQDTGAANNPEDTGAEET----SANDNSQGFAHLGLPDDVQE 76
Query: 123 KLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKT 182
+ G PIQ T ++++G D+VG A+TG GKT AF LP+L + T+A
Sbjct: 77 AVSKVGFTKPSPIQEETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQID---TEA---- 129
Query: 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVV 241
R P LVL PTRELA QV + F + +G + +YGG Y Q L++G ++
Sbjct: 130 ---RYPQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGGQAYGIQLSGLRRGAQII 186
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
+GTPGR+ DH+E+G++D+S L+F VLDEADEML MGF EDVE IL + +V LFS
Sbjct: 187 VGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVA--LFS 244
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
AT+P+ ++ +S ++L + + V +E+ + + N+ L + I+
Sbjct: 245 ATMPNSIRRLSKQYLNNPAEVT--VKSER-RTNDNITQRFLLTPHRHKMDAFTRILEVID 301
Query: 362 SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
I+F TK + +AD L A A++GDI Q QRE T+ + G+ LVAT+
Sbjct: 302 YDA-IIVFCRTKHATEDVADSLKEAGYNAAAINGDIAQQQRERTVDQLKDGRLDILVATD 360
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERE 476
VAARGLD++ + ++ + P D E+Y+HR GRTGRAG TG A++ PR + + IER
Sbjct: 361 VAARGLDVDRITHVVNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERV 420
Query: 477 SGVKFEHISAP 487
+ + E + P
Sbjct: 421 TNARLEEMDLP 431
>gi|374612243|ref|ZP_09685023.1| DEAD/DEAH box helicase domain protein [Mycobacterium tusciae JS617]
gi|373547956|gb|EHP74664.1| DEAD/DEAH box helicase domain protein [Mycobacterium tusciae JS617]
Length = 483
Score = 244 bits (624), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 145/364 (39%), Positives = 212/364 (58%), Gaps = 26/364 (7%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G E F IQ +T M L G DL+G+ARTG GKTLAF +P+L+ +T P + + +G
Sbjct: 21 LLEDGKEHPFAIQELTMPMALAGDDLIGQARTGMGKTLAFGVPLLQRITTDPQR--ELSG 78
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDV-----YGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
RA LV++PTREL QV+ D ++ G LT +YGG PY Q L+KG+
Sbjct: 79 IPRA---LVVVPTRELCLQVYSDLEIAAKYLTAGDRRLTVTSIYGGRPYEPQIEALQKGV 135
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
DVV+GTPGR+ D ++G++ L L VLDEADEML +GF+ D+E IL ++ Q +
Sbjct: 136 DVVVGTPGRLLDLAQQGHLQLGGLSMLVLDEADEMLDLGFLPDIERILRQI--PTDRQAM 193
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVLPCSSSARSQVIPDI 356
LFSAT+P + ++ F+ + + A+T+ + + +++ I
Sbjct: 194 LFSATMPDPIITLARTFMN---QPTHIRAEAPHSAATHDTTEQFAYRAHALDKVEMVARI 250
Query: 357 IRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMT 412
++ G T++FT TK +A +++D L A+HGD+ Q RE +L FR+G
Sbjct: 251 LQAEGRGA-TMVFTRTKRTAQKVSDELAERGFKVGAVHGDLGQGAREKSLKAFRTGDVDV 309
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PRKS 468
LVAT+VAARG+DI+D+ +I + P D +AY+HR GRTGRAG TG+AV L D PR +
Sbjct: 310 LVATDVAARGIDIDDITHVINYQIPEDDQAYVHRIGRTGRAGKTGIAVTLVDWDELPRWT 369
Query: 469 SVSK 472
+ K
Sbjct: 370 MIDK 373
>gi|429195540|ref|ZP_19187565.1| ATP-dependent RNA helicase DeaD family protein [Streptomyces
ipomoeae 91-03]
gi|428668727|gb|EKX67725.1| ATP-dependent RNA helicase DeaD family protein [Streptomyces
ipomoeae 91-03]
Length = 916
Score = 244 bits (624), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 142/365 (38%), Positives = 206/365 (56%), Gaps = 20/365 (5%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L++ GI + FPIQ MT + L G+D++G+A+TG GKTL F LP+LE +T A +
Sbjct: 45 EALEAVGIINPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVT---VPADVE 101
Query: 182 TGYGR------APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
G + AP LV++PTREL QV D G + +YGG Y Q LK
Sbjct: 102 AGRAKPEDLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVTAIYGGRAYEPQVEALK 161
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
KG+DVVIGTPGR+ D + +DL +K VLDEADEML +GF+ DVE I+G + +
Sbjct: 162 KGVDVVIGTPGRLLDLAGQKKLDLKHVKCLVLDEADEMLDLGFLPDVEKIIGML--PARR 219
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QT+LFSAT+P V ++ +++ +++ N + + + +++
Sbjct: 220 QTMLFSATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANTSQHIYRAHNMDKPEMVAR 279
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411
I++ G ++F TK +A+ LAD L + A+HGD+ Q RE L FR+GK
Sbjct: 280 ILQA-DGRGLAMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVD 338
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PRK 467
LV T+VAARG+D+ V +I + P D + Y+HR GRTGRAG G+A+ L D PR
Sbjct: 339 VLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGAKGIAITLVDWDDIPRW 398
Query: 468 SSVSK 472
++K
Sbjct: 399 QLINK 403
>gi|184200206|ref|YP_001854413.1| ATP-dependent DEAD-box RNA helicase DeaD [Kocuria rhizophila
DC2201]
gi|183580436|dbj|BAG28907.1| ATP-dependent DEAD-box RNA helicase DeaD [Kocuria rhizophila
DC2201]
Length = 719
Score = 244 bits (624), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 150/370 (40%), Positives = 206/370 (55%), Gaps = 16/370 (4%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G E PIQA T +L G D+VG A+TG GKT AF +P L L + S G
Sbjct: 91 LDEVGYEYPSPIQAATIPALLSGRDVVGLAQTGTGKTAAFAVPALSKLA----ELSDLHG 146
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
R+ VLVL PTRELA QV E F Y + T +YGG+ Y Q LK+G VV+
Sbjct: 147 PQRSTRVLVLAPTRELALQVAEAFGSYATHLEDFTVLPVYGGSSYGPQLAGLKRGAQVVV 206
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+ +G++ L + + VLDEADEMLRMGF EDVE IL + + Q LFSA
Sbjct: 207 GTPGRVIDHLSKGSLKLDDIAYVVLDEADEMLRMGFSEDVEKILAQT--PVEKQVALFSA 264
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P ++ I+ ++L+ D + I + K TN R + + + ++
Sbjct: 265 TMPKAIRRIAQQYLR-DPQEITV--KAKTTTGTNTRQRYMQVMGPHKLDAMTRVLEVEDY 321
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G I+F TK + ++AD L A A++GDI Q+ RE T+ R GK LVAT+V
Sbjct: 322 DG-VIVFVRTKAATEEIADKLKARGYTAAAINGDIPQNLRERTVDSLREGKIDILVATDV 380
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERES 477
AARGLD+ + L++ + P D E+Y+HR GRTGRAG G A++ PR K + IE+ +
Sbjct: 381 AARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRKGEAILFMTPREKYLLRAIEKAT 440
Query: 478 GVKFEHISAP 487
E + P
Sbjct: 441 RQPVEQMRVP 450
>gi|374307851|ref|YP_005054282.1| ATP-dependent RNA helicase DeaD [Filifactor alocis ATCC 35896]
gi|291166137|gb|EFE28183.1| ATP-dependent RNA helicase DeaD [Filifactor alocis ATCC 35896]
Length = 539
Score = 244 bits (624), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 148/382 (38%), Positives = 218/382 (57%), Gaps = 20/382 (5%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
+ F IS ++ L+ G E IQ + + +G DL+G+++TG GKT AF +PIL+++
Sbjct: 5 TEFNISKEIQMALEQLGFEEATIIQELAIPIATEGKDLIGQSQTGTGKTFAFGIPILDNI 64
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
LV+ PTRELA QV +FD + + +YGG Q
Sbjct: 65 LQNNN---------HQIQALVICPTRELAVQVSNEFDKLTAFTKIRNIAVYGGEYIDKQI 115
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
LKK + +VIGTPGRI DHIER I L ++F VLDEADEML MGF+ED+E IL E
Sbjct: 116 KGLKKKVQIVIGTPGRILDHIERKTIKLDHVRFVVLDEADEMLDMGFIEDIENILR--ET 173
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
+ + QT+LFSAT+P+ + +S K+LK+ + V N+ M + I + ++ +S+
Sbjct: 174 SEERQTMLFSATMPAEILSLSKKYLKNPEMI--RVKNKTMTVD-QIEQIYMKVKNADKSE 230
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQL-ADLLP---GARALHGDIQQSQREVTLAGFRS 407
V+ I++ SS + IIF TK+ +L D+ ALHGD++Q +R++ L FR
Sbjct: 231 VLSRILQLESS-KKAIIFCNTKKMVDELVVDMQNRGYAVEALHGDLKQQKRDMVLNRFRE 289
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML-YDPR 466
G+ L+AT+VAARGLDI DV L+I + P + E Y+HR GRTGRAG +G + Y
Sbjct: 290 GQISMLIATDVAARGLDIRDVDLVINYDLPIEEEQYVHRIGRTGRAGASGKSYSFAYGRD 349
Query: 467 KSSVSKIERESGVKFEHISAPQ 488
+ +IE+ + K + S P+
Sbjct: 350 IERLRRIEKYAKCKIKEESIPR 371
>gi|120402790|ref|YP_952619.1| DEAD/DEAH box helicase [Mycobacterium vanbaalenii PYR-1]
gi|119955608|gb|ABM12613.1| DEAD/DEAH box helicase domain protein [Mycobacterium vanbaalenii
PYR-1]
Length = 494
Score = 244 bits (624), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 150/370 (40%), Positives = 210/370 (56%), Gaps = 37/370 (10%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQ +T + L G DL+G+ARTG GKT AF +P+L +T + TG
Sbjct: 25 LAENGIEHAFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLHRITTDTER--PLTG 82
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG------------LTSCCLYGGAPYHAQE 231
RA L+++PTREL QV+ED VG LT +YGG PY Q
Sbjct: 83 IPRA---LIVVPTRELCIQVYEDL------VGASKYLMADETRKLTVTAIYGGRPYEPQI 133
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
L+KG+DVV+GTPGR+ D ++G++ L L VLDEADEML +GF+ D+E IL ++
Sbjct: 134 EALQKGVDVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILKQI-- 191
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
K Q +LFSAT+P + ++ F+ + I + + + +
Sbjct: 192 PAKRQAMLFSATMPDPIITLARTFM-TQPTHIRAEAPHSSATHDSTEQFAYRAHALDKVE 250
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGDIQQSQREVTLAGFR 406
++ I++ G T+IFT TK +A ++AD L G R A+HGD+ Q+ RE L FR
Sbjct: 251 MVARILQAEGRGA-TMIFTRTKRTAQKVADEL-GERGFKVGAVHGDLGQAAREKALKSFR 308
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD-- 464
+G+ LVAT+VAARG+DI+D+ +I + P D +AY+HR GRTGRAG TG+AV L D
Sbjct: 309 TGEVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGIAVTLVDWD 368
Query: 465 --PRKSSVSK 472
PR S + K
Sbjct: 369 ELPRWSMIDK 378
>gi|350632116|gb|EHA20484.1| hypothetical protein ASPNIDRAFT_203639 [Aspergillus niger ATCC
1015]
Length = 1569
Score = 244 bits (624), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 144/372 (38%), Positives = 212/372 (56%), Gaps = 20/372 (5%)
Query: 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
NA + + L E +K ++ P+Q + +V++G DL+ A+TG GKT F+ PIL
Sbjct: 187 NAFTNPPLDDHLIENIKLAHYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPIL 246
Query: 169 -ESLTNGPT----KASKKTGYGRA----PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC 219
++ NGP+ +A + GYGR P+ L+L PTREL Q+ ++ + + C
Sbjct: 247 SQAYQNGPSAAPAQAGGQFGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPC 306
Query: 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV 279
+YGGA +Q ++++G D+++ TPGR+ D IERG I L ++K+ +LDEAD ML MGF
Sbjct: 307 VVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFE 366
Query: 280 EDVELILGKVED---ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN 336
+ I+ + ED N QTL+FSAT P ++ ++ FLK + L S N
Sbjct: 367 PQIRRIV-EGEDMPHVNDRQTLMFSATFPRDIQMLARDFLKD---YVFLSVGRVGSTSEN 422
Query: 337 VRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGD 392
+ V + V+ DI+ + + G T+IF ETK A L+D L R A+HGD
Sbjct: 423 ITQKVEYVEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGD 482
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
Q +RE L FRSG+ LVAT VAARGLDI +V +I + P D++ Y+HR GRTGR
Sbjct: 483 RTQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGR 542
Query: 453 AGNTGVAVMLYD 464
AGNTG+A ++
Sbjct: 543 AGNTGIATAFFN 554
>gi|354547955|emb|CCE44690.1| hypothetical protein CPAR2_404940 [Candida parapsilosis]
Length = 647
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 144/364 (39%), Positives = 207/364 (56%), Gaps = 15/364 (4%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKA 178
L E +K P+Q + +V G DL+ A+TG GKT F+ P+L ES NGP
Sbjct: 175 LVENIKLSKFTKPTPVQKYSVPIVAGGRDLMACAQTGSGKTGGFLFPVLSESYANGPAPV 234
Query: 179 SKKTG----YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ TG + P+VLV+ PTREL Q++++ + + C +YGGA Q +L
Sbjct: 235 PESTGTFSSHKAYPTVLVMAPTRELVSQIYDESKKFAYRSWVRPCVVYGGADIGNQIRQL 294
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE--DA 292
+G D+++ TPGR+KD +ERG + L+++K+ VLDEAD ML MGF + I+ + +
Sbjct: 295 DRGCDLLVATPGRLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQIRQIVQECDMPSV 354
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
QTL+FSAT P ++ ++ FLK+ I L S N+ VL + V
Sbjct: 355 ENRQTLMFSATFPRDIQMLARDFLKN---YIFLSVGRVGSTSENITQKVLYVEDEEKKSV 411
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSG 408
I D++ +S G TI+FTETK A LAD L A A+HGD Q +RE LA F++G
Sbjct: 412 ILDMLNANNS-GLTIVFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKNG 470
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS 468
K LVAT VAARGLDI +V +I + P D++ Y+HR GRTGRAGN G+A ++
Sbjct: 471 KAPILVATAVAARGLDIPNVSHVINYDLPGDIDDYVHRIGRTGRAGNVGIATAFFNRNNK 530
Query: 469 SVSK 472
+++K
Sbjct: 531 NIAK 534
>gi|15221998|ref|NP_175911.1| DEAD-box ATP-dependent RNA helicase 20 [Arabidopsis thaliana]
gi|75333448|sp|Q9C718.1|RH20_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 20
gi|12321578|gb|AAG50841.1|AC073944_8 ethylene-responsive RNA helicase, putative [Arabidopsis thaliana]
gi|17065338|gb|AAL32823.1| Unknown protein [Arabidopsis thaliana]
gi|22136216|gb|AAM91186.1| unknown protein [Arabidopsis thaliana]
gi|332195071|gb|AEE33192.1| DEAD-box ATP-dependent RNA helicase 20 [Arabidopsis thaliana]
Length = 501
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 140/364 (38%), Positives = 207/364 (56%), Gaps = 18/364 (4%)
Query: 108 PNAVSRFR-ISVP--LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
P V FR + P + E++K G PIQ+ + M + G DL+G A TG GKTL+++
Sbjct: 95 PKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYL 154
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
LP + + P A +G P VLVL PTRELA Q+ ++ +G + + + C+YGG
Sbjct: 155 LPAIVHVNAQPMLA-----HGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGG 209
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
P Q L+KG+++VI TPGR+ D +E N +L + + VLDEAD ML MGF +
Sbjct: 210 VPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRK 269
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344
I+ + QTL +SAT P V+ +S KFL + K I +G+ +KA+ +R IV
Sbjct: 270 IVSHIRPDR--QTLYWSATWPKEVEQLSKKFLYNPYKVI--IGSSDLKANRAIRQIVDVI 325
Query: 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA-----DLLPGARALHGDIQQSQRE 399
S S + + ++ G R ++F +TK+ Q+ D P A ++HGD Q++R+
Sbjct: 326 SESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQITRQLRMDGWP-ALSIHGDKSQAERD 384
Query: 400 VTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 459
L+ FRSGK + AT+VAARGLD+ DV+ +I + P +E Y+HR GRTGRAG G A
Sbjct: 385 WVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTA 444
Query: 460 VMLY 463
+
Sbjct: 445 YTFF 448
>gi|389580292|ref|ZP_10170319.1| DNA/RNA helicase, superfamily II [Desulfobacter postgatei 2ac9]
gi|389401927|gb|EIM64149.1| DNA/RNA helicase, superfamily II [Desulfobacter postgatei 2ac9]
Length = 563
Score = 244 bits (623), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 144/375 (38%), Positives = 215/375 (57%), Gaps = 22/375 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L++ G E PIQ +T +++ DL+G+ARTG GKT AF LP+L S+
Sbjct: 24 LQTVGYEIPTPIQTLTIPRMIECKDLLGQARTGTGKTAAFALPLL----------SRINL 73
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
+ P VLV+ PTRELA QV + F+ YG + GL +YGG Y Q +LK+G V++
Sbjct: 74 ENKRPQVLVVTPTRELAIQVAQSFNDYGAKMKGLNVLAVYGGQSYSVQLNQLKRGAHVIV 133
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+ R + L+ L VLDEADEML+MGF++DVE IL ++ Q LFSA
Sbjct: 134 GTPGRLMDHMRRKTLCLADLTGLVLDEADEMLQMGFIDDVEWILSQI--PQPTQIALFSA 191
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ I+ K+LK+ +K I ++ + + L + +S + I+
Sbjct: 192 TMPAPIQKIAGKYLKNPEKVII---RQESDVTNTIHQKFLMVKNINKSDALVRILEASFH 248
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G I+FT T+ L +L AL+G+I Q+ RE T+ ++G LVAT+V
Sbjct: 249 DG-VIVFTRTRNDTMTLTKILEEKGFKTEALNGEIAQAARERTVNRLKNGSIDILVATDV 307
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERES 477
AARGLD++ + +I + P ++ YIHR GRTGRAG TG A++ P+ K + +IE+ +
Sbjct: 308 AARGLDVDRISHVINYDMPSKIDPYIHRIGRTGRAGRTGEAILFVQPKEKWMLKQIEKAT 367
Query: 478 GVKFEHISAPQPADI 492
K E I+ P +I
Sbjct: 368 LRKIEEIALPSNREI 382
>gi|319778451|ref|YP_004129364.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
gi|397662231|ref|YP_006502931.1| putative ATP-dependent RNA helicase [Taylorella equigenitalis ATCC
35865]
gi|317108475|gb|ADU91221.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
gi|394350410|gb|AFN36324.1| putative ATP-dependent RNA helicase [Taylorella equigenitalis ATCC
35865]
gi|399115832|emb|CCG18635.1| putative ATP-dependent RNA helicase [Taylorella equigenitalis
14/56]
Length = 442
Score = 244 bits (623), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 149/376 (39%), Positives = 223/376 (59%), Gaps = 19/376 (5%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E + G E PIQA++F+ +L+G D++G A+TG GKT AF LPIL L KA+
Sbjct: 17 ENISKTGYEYATPIQALSFEPILEGRDIMGAAQTGTGKTAAFTLPILNRLI---PKANYS 73
Query: 182 TGYGRAP-SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDV 240
T + P +LVL PTRELA+Q+ ++ ++Y + L +YGG ++Q+ +L +G D+
Sbjct: 74 TSPAKHPVRMLVLTPTRELAEQISKNVNLYSDGLPLKCSLIYGGVDINSQKQELMRGADI 133
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
VI TPGR+ DHIE+ ++L+ ++F VLDEAD ML MGF+ D+ IL + + Q+LL+
Sbjct: 134 VIATPGRLLDHIEQRTVNLTQVEFLVLDEADRMLDMGFMPDLLRILSNLPKSR--QSLLY 191
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII--R 358
SAT ++ ++ KFL + + V + AST ++ V S S ++ + I+ R
Sbjct: 192 SATFSENIRSLAQKFLNNPVEIT--VASNNSTAST-IKQEVYSVSESDKNAALVYILTSR 248
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+++ IIF+ K + L LL ++LHGD Q +R L F+S K LV
Sbjct: 249 AFNN---VIIFSNRKVTCKNLERLLNNYDLAVQSLHGDKSQLERTKALDLFKSSKCNILV 305
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKI 473
AT+VAARGLDI+DV +I E P E Y+HR GRTGRAG G+A+ L + S+S+I
Sbjct: 306 ATDVAARGLDISDVDAVINYELPPTSEDYVHRIGRTGRAGKKGIAISLCSSEEGKSLSEI 365
Query: 474 ERESGVKFEHISAPQP 489
E +G+KF+ +S P
Sbjct: 366 ETLTGLKFQKLSLSIP 381
>gi|379748729|ref|YP_005339550.1| rhlE [Mycobacterium intracellulare ATCC 13950]
gi|379756031|ref|YP_005344703.1| rhlE [Mycobacterium intracellulare MOTT-02]
gi|379763565|ref|YP_005349962.1| rhlE [Mycobacterium intracellulare MOTT-64]
gi|387877380|ref|YP_006307684.1| rhlE [Mycobacterium sp. MOTT36Y]
gi|406032274|ref|YP_006731166.1| DEAD-box ATP-dependent RNA helicase cshA [Mycobacterium indicus
pranii MTCC 9506]
gi|378801093|gb|AFC45229.1| rhlE [Mycobacterium intracellulare ATCC 13950]
gi|378806247|gb|AFC50382.1| rhlE [Mycobacterium intracellulare MOTT-02]
gi|378811507|gb|AFC55641.1| rhlE [Mycobacterium intracellulare MOTT-64]
gi|386790838|gb|AFJ36957.1| rhlE [Mycobacterium sp. MOTT36Y]
gi|405130821|gb|AFS16076.1| DEAD-box ATP-dependent RNA helicase cshA [Mycobacterium indicus
pranii MTCC 9506]
Length = 509
Score = 244 bits (623), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 145/351 (41%), Positives = 205/351 (58%), Gaps = 18/351 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L KGIES F IQ +T + L G DL+G+ARTG GKT AF +P+L+ +T+G T A G
Sbjct: 25 LAEKGIESPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQRITSG-TAARPLNG 83
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG------LTSCCLYGGAPYHAQEFKLKKG 237
P L+++PTREL QV +D + + L+ +YGG PY AQ L+ G
Sbjct: 84 ---TPRALIVVPTRELCLQVTDDLALAAKHLTADEGRRLSVVPIYGGRPYEAQIEALRAG 140
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
DVV+GTPGR+ D ++G++ L L VLDEADEML +GF+ D+E IL ++ Q+
Sbjct: 141 ADVVVGTPGRLLDLSQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIP--VDRQS 198
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
+LFSAT+P + ++ F+ + T V++ + + +++ I+
Sbjct: 199 MLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQY-AYRAHALDKVELVSRIL 257
Query: 358 RCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTL 413
+ G T+IFT TK +A ++AD L A+HGD+ Q RE L FR+G L
Sbjct: 258 QAEGRGA-TMIFTRTKRTAQKVADELAERGFAVGAVHGDLGQVAREKALKAFRTGDIDVL 316
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
VAT+VAARG+DI+DV +I + P D +AY+HR GRTGRAG TGVAV L D
Sbjct: 317 VATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKTGVAVTLVD 367
>gi|408529448|emb|CCK27622.1| ATP-dependent RNA helicase DeaD [Streptomyces davawensis JCM 4913]
Length = 917
Score = 244 bits (623), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 137/353 (38%), Positives = 202/353 (57%), Gaps = 16/353 (4%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L++ GI + FPIQ MT + L G+D++G+A+TG GKTL F LP+LE +T A +
Sbjct: 43 EALEAVGIVNPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVT---VPADVE 99
Query: 182 TGYGR------APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
G + AP LV++PTREL QV D G + +YGG Y Q LK
Sbjct: 100 AGRAKPEDLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALK 159
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
KG+DV++GTPGR+ D + ++L +K VLDEADEML +GF+ DVE I+ + +
Sbjct: 160 KGVDVIVGTPGRLLDLAGQKKLNLKHIKALVLDEADEMLDLGFLPDVEKIINML--PARR 217
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QT+LFSAT+P V ++ +++ +++ N+ V + + +++
Sbjct: 218 QTMLFSATMPGAVIGLARRYMSQPTHIRATAPDDEGVTVANISQHVYRAHNMDKPEMVAR 277
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411
I++ G ++F TK +A+ LAD L + A+HGD+ Q RE L FR+GK
Sbjct: 278 ILQA-DGRGLAMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVD 336
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
LV T+VAARG+D+ V +I + P + + Y+HR GRTGRAGNTG A+ L D
Sbjct: 337 VLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGNTGTAITLVD 389
>gi|423351179|ref|ZP_17328830.1| hypothetical protein HMPREF9719_01125 [Turicella otitidis ATCC
51513]
gi|404386815|gb|EJZ81953.1| hypothetical protein HMPREF9719_01125 [Turicella otitidis ATCC
51513]
Length = 437
Score = 244 bits (623), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 153/373 (41%), Positives = 218/373 (58%), Gaps = 26/373 (6%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES +P+ + ++ + + L GIE F IQ + + LDG D++G+ARTG GKTLA+
Sbjct: 11 ESRNPS-FAELGVAAEIVDALNEGGIERTFAIQKLALPLALDGKDIIGQARTGMGKTLAY 69
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223
+P+L+ + + ++ T P LV+ PTRELA+QV D + + L C+YG
Sbjct: 70 GVPLLDRVFD----SADVTAPDGTPRALVVAPTRELARQVGTDLENAARGLPLEVLCIYG 125
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283
G + Q LKKG+DVV+GTPGR+ D RG +DL ++ VLDEADEML +GF+ DV
Sbjct: 126 GQDFAPQLEGLKKGVDVVVGTPGRLLDLNRRGALDLGGVEIVVLDEADEMLDLGFLPDVT 185
Query: 284 LILGKVEDANKVQTLLFSATLPSWV----KHISTK--FLKSDKKTIDLVGNEKMKASTNV 337
+L ++ A + QTLLFSAT+P + + + TK ++++ T D ++ AST
Sbjct: 186 KLL-ELAPAERRQTLLFSATMPGSILGLARSVMTKPVHIRAEAPTED-----QLHAST-- 237
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKES----ASQLADLLPGARALHGDI 393
+ +V + VI I++ G+TI+F TK S A LA+ A+HGD+
Sbjct: 238 KQVVFQSHKLDKKAVIARILQAEGR-GKTIMFARTKRSTALAAEDLAERGFAVAAVHGDL 296
Query: 394 QQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA 453
QS RE +LA R G LVAT+VAARGLDI+DV +I E P D + Y+HR GRTGRA
Sbjct: 297 PQSARERSLAALRDGSCDVLVATDVAARGLDIDDVTHVINYEVPTDPQTYVHRIGRTGRA 356
Query: 454 GNTGVAVML--YD 464
G +G AV L YD
Sbjct: 357 GKSGTAVTLVGYD 369
>gi|296121514|ref|YP_003629292.1| DEAD/DEAH box helicase [Planctomyces limnophilus DSM 3776]
gi|296013854|gb|ADG67093.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
3776]
Length = 608
Score = 244 bits (623), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 155/431 (35%), Positives = 233/431 (54%), Gaps = 37/431 (8%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
IS P+ + + G + PIQA T ++++G D++G A+TG GKT AF +P+L+++
Sbjct: 19 ISPPILSAVTASGYVNPTPIQARTIPLLIEGRDVLGMAQTGTGKTAAFAIPMLQAIDLSS 78
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
+ A VL+L PTRELA QV E F+ Y + GL +YGG Y Q +L
Sbjct: 79 S----------ATQVLILAPTRELAMQVAEAFEKYAANLKGLRVAAIYGGQDYQLQFRQL 128
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
+G V++GTPGR+ DHI RG++ L SLK VLDEADEMLRMGF EDVE IL + ++
Sbjct: 129 NRGAHVIVGTPGRVMDHIRRGSLKLDSLKGLVLDEADEMLRMGFAEDVEWILEQT--PSQ 186
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
Q LFSAT+P ++ I+ K LK+ ++ + + +R + + V+
Sbjct: 187 RQIALFSATMPDSIRRIAQKHLKNPA---EITIKRRTATAETIRQRFITVPPFQKEAVLA 243
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP--GAR--ALHGDIQQSQREVTLAGFRSGKF 410
I+ IIF +TK + LA+ L G R AL D+ Q+QRE + +SG+
Sbjct: 244 RILETEPIDA-VIIFVKTKSTTVPLAEFLASQGYRTAALSSDVPQAQRERIVEHLKSGRL 302
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSS 469
++AT+VAARGLD+ + +I + P D E+Y+HR GRTGRAG G ++ PR +
Sbjct: 303 DIVIATDVAARGLDVQRITHVINFDLPSDSESYVHRIGRTGRAGRQGDTILFLHPRERFQ 362
Query: 470 VSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLS 529
+ +IE+ + E + P A QV++ I FKS + L++ L
Sbjct: 363 LRRIEQVTRQPIEPMQVPAAA---------------QVNERRIERFKSKIKTALDHRDLE 407
Query: 530 AAELLAKALAK 540
A + ++L K
Sbjct: 408 AFSGIIESLQK 418
>gi|254776598|ref|ZP_05218114.1| RhlE [Mycobacterium avium subsp. avium ATCC 25291]
Length = 505
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 142/351 (40%), Positives = 202/351 (57%), Gaps = 18/351 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L KGI+ F IQ +T + L G DL+G+ARTG GKT AF +P+L+ +T G +
Sbjct: 25 LDEKGIQHSFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQRITAG----TAPRA 80
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYG------GAVGLTSCCLYGGAPYHAQEFKLKKG 237
P LV++PTREL QV +D + G L+ +YGG PY Q L+ G
Sbjct: 81 LNGTPRALVVVPTRELCLQVTDDLTLAAKHLTADGGRPLSVVPIYGGRPYEPQIDALRAG 140
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
DVV+GTPGR+ D ++G++ L L VLDEADEML +GF+ D+E IL ++ D Q+
Sbjct: 141 ADVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIPDDR--QS 198
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
+LFSAT+P + ++ F+ + T V++ V + + +++ ++
Sbjct: 199 MLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQY-VYRAHALDKVELVSRVL 257
Query: 358 RCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTL 413
+ S G T+IFT TK +A ++AD L A+HGD+ Q RE L FR+G L
Sbjct: 258 QAESRGA-TMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQVAREKALKAFRTGDIDVL 316
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
VAT+VAARG+DI+DV +I + P D +AY+HR GRTGRAG GVAV L D
Sbjct: 317 VATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKAGVAVTLVD 367
>gi|383830775|ref|ZP_09985864.1| DNA/RNA helicase, superfamily II [Saccharomonospora xinjiangensis
XJ-54]
gi|383463428|gb|EID55518.1| DNA/RNA helicase, superfamily II [Saccharomonospora xinjiangensis
XJ-54]
Length = 588
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 153/382 (40%), Positives = 212/382 (55%), Gaps = 24/382 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L L G E PIQ +LDG+D+VG+A TG GKT AF LP+L L +
Sbjct: 47 LLRALSDLGYEEPTPIQMAAIPALLDGADVVGQAATGTGKTAAFSLPVLHRLAD-----L 101
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
+ G PS LVL+PTRELA QV E YG +G+ +YGG P Q L+ G+D
Sbjct: 102 DRNG---KPSALVLVPTRELAAQVCEAMYRYGRHLGIRVVPVYGGQPMGRQLRSLETGVD 158
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+ TPGR DH+ RG++DLS L+ VLDEADEML MGF ED++ IL + QT+L
Sbjct: 159 VVVATPGRALDHLSRGSLDLSKLRMVVLDEADEMLDMGFAEDIDAILDQT--PTDRQTML 216
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMK----ASTNVRHIVLPCSSSARSQVIPD 355
FSAT+P + + ++L+ ++ I+L E M A T V ++V A + D
Sbjct: 217 FSATMPPRISGMVRRYLREPRR-IELTRAESMSGDAAAVTQVAYVVPRGHKPAALGRVLD 275
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFM 411
I + T++F T+E +L +++ G A ALHG + QSQR + R+G
Sbjct: 276 I----EAPEATVVFCRTREEVDRLTEIMNGRGYRAEALHGGMDQSQRNRVVGRLRAGTAD 331
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS 471
+VAT+VAARGLDI+ + ++ + P E Y+HR GR GRAG G A+ L +PR+ +
Sbjct: 332 LVVATDVAARGLDIDQLTHVVNYDVPSAPEIYVHRIGRVGRAGREGSAITLAEPREHRMI 391
Query: 472 K-IERESGVKFEHISAPQPADI 492
K IER +G P AD+
Sbjct: 392 KTIERVTGQTISVRKLPTVADL 413
>gi|108798364|ref|YP_638561.1| DEAD/DEAH box helicase [Mycobacterium sp. MCS]
gi|119867461|ref|YP_937413.1| DEAD/DEAH box helicase [Mycobacterium sp. KMS]
gi|108768783|gb|ABG07505.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
gi|119693550|gb|ABL90623.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. KMS]
Length = 507
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 147/362 (40%), Positives = 205/362 (56%), Gaps = 22/362 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L +GI F IQ +T M L G DL+G+ARTG GKT AF +P+L+ +T K + +G
Sbjct: 25 LAEEGIHQPFAIQELTLPMALAGDDLIGQARTGMGKTYAFGVPLLQRVTTDTEK--ELSG 82
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDV-----YGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
RA L+++PTREL QVH D + G L+ +YGG PY Q L+KG
Sbjct: 83 IPRA---LIVVPTRELCLQVHSDLSLAAKYLTAGDRKLSVVSIYGGRPYEPQIESLRKGA 139
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
DVV+GTPGR+ D ++G++ L L VLDEADEML +GF+ D+E IL + D Q +
Sbjct: 140 DVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQTPDTR--QAM 197
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P + ++ F+ I + + + +++ I++
Sbjct: 198 LFSATMPDPIITLARTFMNQPTH-IRAESPQSSATHDTTAQFAYRAHALDKVEMVSRILQ 256
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G T+IFT TK +A ++AD L A+HGD+ Q RE L FR+G+ LV
Sbjct: 257 AEGRGA-TMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQGAREKALKSFRTGEVDVLV 315
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PRKSSV 470
AT+VAARG+DI+D+ +I + P D +AY+HR GRTGRAG TGVAV L D PR S +
Sbjct: 316 ATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGVAVTLVDWDELPRWSMI 375
Query: 471 SK 472
K
Sbjct: 376 DK 377
>gi|196003500|ref|XP_002111617.1| hypothetical protein TRIADDRAFT_55837 [Trichoplax adhaerens]
gi|190585516|gb|EDV25584.1| hypothetical protein TRIADDRAFT_55837 [Trichoplax adhaerens]
Length = 651
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 166/448 (37%), Positives = 239/448 (53%), Gaps = 42/448 (9%)
Query: 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVL 165
E + ++F + L +L G F IQA++ L+G D++G+A TG GKTLAF L
Sbjct: 90 EDVDNFAQFPLDETLVSRLHQLGFNRPFQIQAVSLPYTLNGRDVLGKALTGSGKTLAFAL 149
Query: 166 PILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-----LTSCC 220
PI++ L+ G +KTG RA +V+ PTREL QVH G + + S
Sbjct: 150 PIIQKLSQG-----EKTGNPRA---IVIAPTRELCSQVH-------GCIADLSSTIKSVA 194
Query: 221 LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVE 280
LYGG Y Q KL++G DV+ TPGR+ DH++R N L ++ +LDEADEML F +
Sbjct: 195 LYGGTAYGPQTSKLRRGADVICATPGRLNDHLKRNNFVLDDVQLLILDEADEMLTPNFRD 254
Query: 281 DVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340
+ NK Q L+F AT+P ++K I+ K+LK+ + ID+ T
Sbjct: 255 SPQ---------NK-QVLMFGATMPRYIKEIAKKYLKT-PEVIDITKKGSPFPKTVTHKA 303
Query: 341 VLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQS 396
V + S RS + +II R+++F TK A+ LA + G + LH D+ Q+
Sbjct: 304 VKLLNWSCRSLAVRNIIE-EEGIQRSVVFVTTKVEANDLAQKINGFGLPVKPLHSDLSQN 362
Query: 397 QREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRD-VEAYIHRSGRTGRAGN 455
+RE + FR GK +VAT+VAARGLDI + L+IQ PP + + Y+HR+GRTGRAG
Sbjct: 363 KREEIIEAFRVGKLKAIVATDVAARGLDIPETDLVIQVAPPPNGFDFYVHRTGRTGRAGR 422
Query: 456 TGVAVMLY-DPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPA 514
+GVAV++Y RK + E V+ E S + +IAK A A + + + I
Sbjct: 423 SGVAVLIYGSDRKDRLFLKELRQQVQVEEKSPLKFEEIAKYAISAAGDRLQEADQRSIKF 482
Query: 515 FKSAAEELLN----NSGLSAAELLAKAL 538
A+ELL G A++LAKAL
Sbjct: 483 ALPKAQELLQKEETTDGNGPADVLAKAL 510
>gi|407984605|ref|ZP_11165216.1| DEAD/DEAH box helicase family protein [Mycobacterium hassiacum DSM
44199]
gi|407373827|gb|EKF22832.1| DEAD/DEAH box helicase family protein [Mycobacterium hassiacum DSM
44199]
Length = 560
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 148/384 (38%), Positives = 218/384 (56%), Gaps = 22/384 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ IQA T ++ GSD+VG A+TG GKT AF +PIL + AS+ T
Sbjct: 32 GYETPSAIQAATIPPLMAGSDVVGLAQTGTGKTAAFAIPILSKIDT----ASRTT----- 82
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
LVL PTRELA QV E F YG + + +YGGA Y Q L++G +V+GTPG
Sbjct: 83 -QALVLAPTRELALQVAEAFGRYGAHLPEVNVLPVYGGASYTPQLAGLRRGAHIVVGTPG 141
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+ERG++DLS + + VLDEADEML+MGF EDVE IL + + +V LFSAT+P
Sbjct: 142 RVIDHLERGSLDLSRIDYLVLDEADEMLQMGFAEDVERILAETPEYKQVA--LFSATMPP 199
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ I+ K+L +++ K + N+ + + + + ++
Sbjct: 200 AIRKITRKYLHD---PVEVTVKAKTATAENISQRYIEVAGPRKLDALTRVLEVEPFEA-M 255
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK++ +LA+ L A A++GDI Q+QRE T+A +SG L+AT+VAARG
Sbjct: 256 IVFVRTKQATEELAERLRARGFAAAAINGDIAQAQRERTIAALKSGAIDILIATDVAARG 315
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKF 481
LD+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + K IE+ + K
Sbjct: 316 LDVERISHVLNYDIPNDTESYVHRIGRTGRAGRSGTALLFVTPRERHLLKAIEKATRSKL 375
Query: 482 EHISAPQPADIAKAAGVEAAETIT 505
P D+ V ++IT
Sbjct: 376 VAAELPTVEDVNAQRVVRFHDSIT 399
>gi|148657801|ref|YP_001278006.1| DEAD/DEAH box helicase [Roseiflexus sp. RS-1]
gi|148569911|gb|ABQ92056.1| DEAD/DEAH box helicase domain protein [Roseiflexus sp. RS-1]
Length = 467
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 136/353 (38%), Positives = 207/353 (58%), Gaps = 20/353 (5%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
FR + ++ G + PIQ LDG D++G A+TG GKT AFVLPIL+ L
Sbjct: 6 FRFHPQITAGIRDLGYHTPTPIQEQVIPHALDGRDVIGIAQTGTGKTAAFVLPILQRLMR 65
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
GP G RA +++ PTRELA+Q+ + G GL S LYGG Y Q +
Sbjct: 66 GPR------GRVRA---MIVTPTRELAEQIQGVIEALGKYTGLRSVTLYGGVGYQGQIQR 116
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L++G+++ + PGR+ DH+ERG + L L +LDEAD+M MGF+ DV IL ++ A
Sbjct: 117 LRRGVEIAVVCPGRLLDHLERGTLTLEHLDMLILDEADQMFDMGFLPDVRRIL-RLAPAQ 175
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
+ QT+LFSAT+P ++ ++ + L+ + +TI + + + V H + P + ++ ++
Sbjct: 176 R-QTMLFSATMPDAIRALAREALR-EPQTIQI---GRSAPVSTVTHAIYPVAEHLKTALL 230
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409
+++R ++ G +IFT TK A L+D L A AL G++ Q++R+ L GFRSG+
Sbjct: 231 IELLR-HTDTGSVLIFTRTKHRAQHLSDTLARMGYRATALQGNMSQNRRQAALDGFRSGR 289
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
+ LVAT++AARG+D+ + +I + P+ EAY HR GRTGRA TG A L
Sbjct: 290 YQILVATDIAARGIDVAHISHVINYDMPQTAEAYTHRIGRTGRAARTGDAFTL 342
>gi|41409410|ref|NP_962246.1| RhlE [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41398241|gb|AAS05862.1| RhlE [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 505
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 144/351 (41%), Positives = 204/351 (58%), Gaps = 18/351 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L KGI+ F IQ +T + L G DL+G+ARTG GKT AF +P+L+ +T G T G
Sbjct: 25 LDEKGIQHPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQRITAG-TAPRALNG 83
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYG------GAVGLTSCCLYGGAPYHAQEFKLKKG 237
RA LV++PTREL QV +D + G L+ +YGG PY Q L+ G
Sbjct: 84 TPRA---LVVVPTRELCLQVTDDLTLAAKHLTADGGRPLSVVPIYGGRPYEPQIDALRAG 140
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
DVV+GTPGR+ D ++G++ L L VLDEADEML +GF+ D+E IL ++ D Q+
Sbjct: 141 ADVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIPDDR--QS 198
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
+LFSAT+P + ++ F+ + T V+++ + + +++ ++
Sbjct: 199 MLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQYVYR-AHALDKVELVSRVL 257
Query: 358 RCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTL 413
+ S G T+IFT TK +A ++AD L A+HGD+ Q RE L FR+G L
Sbjct: 258 QAESRGA-TMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQVAREKALKAFRTGDIDVL 316
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
VAT+VAARG+DI+DV +I + P D +AY+HR GRTGRAG GVAV L D
Sbjct: 317 VATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKAGVAVTLVD 367
>gi|330836276|ref|YP_004410917.1| DEAD/DEAH box helicase [Sphaerochaeta coccoides DSM 17374]
gi|329748179|gb|AEC01535.1| DEAD/DEAH box helicase domain protein [Sphaerochaeta coccoides DSM
17374]
Length = 634
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 164/445 (36%), Positives = 245/445 (55%), Gaps = 46/445 (10%)
Query: 124 LKSKGIESLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKT 182
LK KG E IQ ++L + +D++G+ARTG GKT AF +PILE++
Sbjct: 20 LKKKGFEEPTQIQKECIPLLLHEKTDVIGQARTGTGKTAAFGIPILETVDE--------- 70
Query: 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
+ L+L PTRELA QV ++ + GL+ +YGGA Q +L +G+ +V+
Sbjct: 71 -HDSTVQALILAPTRELAVQVADEISSMRPSSGLSIAAIYGGASMSLQLRQLHRGVQIVV 129
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR++DH++RG ++L +LKF VLDEADEML MGF+ED+E IL + A+K + L FSA
Sbjct: 130 GTPGRVQDHLDRGTLNLENLKFMVLDEADEMLDMGFIEDIENILSRTP-ADK-RMLCFSA 187
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS----ARSQVIPDIIR 358
T+P+ +++++ +F+K D K + +V + TN + S A +VI +
Sbjct: 188 TMPAPIQNLAQRFMK-DPKIVRVVSQDMTNLLTN--QVCYEVRESDKLEALCRVIDVAVD 244
Query: 359 CYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLV 414
Y ++F TK ++ + L A ALHGD+ Q QRE L FR + LV
Sbjct: 245 FYG-----LVFCRTKLQCDEVTEKLVARGQDADALHGDLSQKQREAILNRFRRRQLSVLV 299
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK-SSVSKI 473
AT+VAARG+DI D+ +I P++ EAYIHR GRTGRAG +G AV PR+ S + I
Sbjct: 300 ATDVAARGIDIPDLTHVINYSIPQNPEAYIHRIGRTGRAGRSGTAVTFITPREYSKLKYI 359
Query: 474 ERESGVKFEHISAPQPADIAKAAGVEAA---ETITQVSDSVIPAFKSAAEELLNNSGLSA 530
+R + + + P +DI +A A E++ V++S F+ A LL +
Sbjct: 360 QRIAHTEIHRETVPAISDIMEAKRNRIATETESLLTVAES--DQFRPLARHLLESHA--- 414
Query: 531 AELLAKALAKAVVSAFLFSSSSNSL 555
A+ VV+A L + N+L
Sbjct: 415 --------AEDVVAALLTGLNKNAL 431
>gi|400977106|ref|ZP_10804337.1| ATP-dependent RNA helicase [Salinibacterium sp. PAMC 21357]
Length = 505
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 139/359 (38%), Positives = 205/359 (57%), Gaps = 21/359 (5%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S I + + L +KGI FPIQ T M L G D++G+A+TG GKTL F LP+L+SL
Sbjct: 4 SELNIDQDMVDALATKGIIEPFPIQTQTIPMGLAGQDIIGQAKTGTGKTLGFGLPVLQSL 63
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
P K L+++PTREL QV ED + +YGG Y Q
Sbjct: 64 GTDPEPGVK---------ALIVVPTRELCVQVAEDLVLAASNRSTKVAAIYGGKAYEGQV 114
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
++K G V++GTPGR+ D + + L +K VLDEAD+ML +GF+ D+E + +
Sbjct: 115 EQIKAGAQVIVGTPGRLLDLASQRMLSLKDIKVMVLDEADKMLDLGFLSDIEKLFAQTPP 174
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSSSAR 349
T+LFSAT+P + ++ +F+ K I + + + T N++H+V + +
Sbjct: 175 TR--HTMLFSATMPGPIVALARRFMN---KPIHIRATDPDEGLTQKNIKHVVYRAHNLDK 229
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGF 405
+VI I++ G +T++FT TK +A++L + L A A+HGD+ Q QRE +A F
Sbjct: 230 DEVIARILQAEGRG-KTVVFTRTKRAAAKLVEELNDRGFNAAAVHGDLNQEQRERAMAAF 288
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
++GK L+AT+VAARG+D+NDV +I P D + Y+HR+GRTGRAG TGVAV D
Sbjct: 289 KAGKKDILIATDVAARGIDVNDVTHVINHTIPDDHDTYLHRAGRTGRAGKTGVAVTFVD 347
>gi|259506519|ref|ZP_05749421.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
gi|259165939|gb|EEW50493.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
Length = 424
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 151/370 (40%), Positives = 212/370 (57%), Gaps = 21/370 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + ++ + + L + GI F IQ T + LDG DL+G+ARTG GKT F
Sbjct: 4 ESPRPT-FTELGVAAEITDALDALGIRHTFAIQEYTLPIALDGHDLIGQARTGMGKTYGF 62
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223
+P+L+ + + ++ P LV++PTRELA QV ED + + L YG
Sbjct: 63 GVPLLDRVFD----SADIEEIDGTPRALVIVPTRELAVQVGEDLERAAVNLPLKVFTFYG 118
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283
G PY Q L+ G+DVV+GTPGR+ D +RG + L + VLDEADEML +GF+ D+E
Sbjct: 119 GTPYEEQIDALETGVDVVVGTPGRLLDLYQRGALRLDKVAILVLDEADEMLDLGFLPDIE 178
Query: 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIV 341
I+ + +K QT+LFSAT+P + ++ FL K + + A+T+ R IV
Sbjct: 179 KIMRAL--THKHQTMLFSATMPGPILTLARSFL---DKPVHIRAESADSAATHATTRQIV 233
Query: 342 LPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGDIQQS 396
+ V I++ G+TIIF TK +A+Q+A+ L AR ++HGD+ Q
Sbjct: 234 FQAHRMDKEAVTARILQARGR-GKTIIFARTKRTAAQVAEDL-AARGFTVGSVHGDMGQP 291
Query: 397 QREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNT 456
RE +L FRSGK LVAT+VAARG+DI+DV +I + P D Y+HR GRTGRAG+T
Sbjct: 292 ARERSLNAFRSGKIDILVATDVAARGIDIDDVTHVINYQTPDDPMTYVHRIGRTGRAGHT 351
Query: 457 GVAVML--YD 464
G AV L YD
Sbjct: 352 GTAVTLVGYD 361
>gi|404424588|ref|ZP_11006154.1| ATP-dependent RNA helicase, partial [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
gi|403650868|gb|EJZ06055.1| ATP-dependent RNA helicase, partial [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
Length = 444
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 144/367 (39%), Positives = 210/367 (57%), Gaps = 20/367 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL-TNGPTKA 178
L L + G+ + FPIQA T L G D++GR RTG GKT AF+LP++ L T+G +A
Sbjct: 12 LVSALAANGVHNPFPIQAATLPDSLTGRDVLGRGRTGSGKTYAFLLPLVARLATSGTPRA 71
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
K+ P L+L PTREL Q+ A GL S ++GG + Q LK+G+
Sbjct: 72 PKR------PRALILAPTRELVTQIEASLTPLAAATGLRSINIFGGVGPNPQIAALKQGV 125
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
D+VI PGR++DH++ G+ DLSS++ VLDEAD M +GF+ V+ +L + Q L
Sbjct: 126 DIVIACPGRLEDHVKSGHADLSSVEITVLDEADHMADLGFLPGVKRLLDRTP--KNCQRL 183
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSATL + V + ++L + V + + + V H VL +S R V+ D+
Sbjct: 184 LFSATLDAGVDVLVDRYLH--DPVVHSVDSAQSPVAAMVHH-VLHVDNSTRISVVADL-- 238
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
++ GRTI+F TK A L L A LHG++ Q+ R L F G LV
Sbjct: 239 -AAAPGRTIVFARTKYGAKNLTRQLNSRGIAAVELHGNLSQNARTRNLTAFSDGSAGVLV 297
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG-VAVMLYDPRKSSVSKI 473
AT++AARG+ ++DV L++ +PP + +AY+HRSGRT RAGN G V +++D + S V +
Sbjct: 298 ATDIAARGIHVDDVSLVVHADPPVEHKAYLHRSGRTARAGNEGTVVTLMHDAQVSDVRSL 357
Query: 474 ERESGVK 480
R++GVK
Sbjct: 358 TRKAGVK 364
>gi|441517957|ref|ZP_20999687.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia hirsuta DSM
44140 = NBRC 16056]
gi|441455272|dbj|GAC57648.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia hirsuta DSM
44140 = NBRC 16056]
Length = 582
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 153/393 (38%), Positives = 214/393 (54%), Gaps = 30/393 (7%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G E+ PIQA T ++ G D+VG A+TG GKT AF +PIL S+
Sbjct: 27 LDEVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAVPIL----------SRLDA 76
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVI 242
R P LVL PTRELA QV E F Y + + +YGG Y Q L++G V++
Sbjct: 77 SARKPQALVLAPTRELALQVAEAFGRYSSRMPEVKVLPIYGGQSYGIQLSGLRRGAQVIV 136
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGRI DH+++G +DLS L F VLDEADEML MGF ED+E IL D+ +V LFSA
Sbjct: 137 GTPGRIIDHLDKGTLDLSELAFLVLDEADEMLSMGFAEDIERILADTPDSKQVA--LFSA 194
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST----NVRHIVLPCSSSARSQVIPDIIR 358
T+P + ++ K+L ++ K+KA T N+ L S + + ++
Sbjct: 195 TMPPTIGRLARKYLDDPQEV-------KVKAQTSTASNITQRYLTVSHQRKLDALTRVLE 247
Query: 359 CYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G IIF TK +LA+ L A A++GD+ Q+QRE T+ + G LV
Sbjct: 248 VEPFDG-MIIFVRTKSGTEELAEKLRARGLSAMAINGDMVQAQRERTINQLKEGGIDILV 306
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-I 473
AT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + + I
Sbjct: 307 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLRAI 366
Query: 474 ERESGVKFEHISAPQPADIAKAAGVEAAETITQ 506
ER + + I P D+ V+ E IT
Sbjct: 367 ERATRQELTEIDLPSVDDVNAQRVVKFGEAITN 399
>gi|226229135|ref|YP_002763241.1| ATP-dependent DEAD-box RNA helicase DeaD [Gemmatimonas aurantiaca
T-27]
gi|226092326|dbj|BAH40771.1| ATP-dependent DEAD-box RNA helicase DeaD [Gemmatimonas aurantiaca
T-27]
Length = 594
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 156/381 (40%), Positives = 210/381 (55%), Gaps = 24/381 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L G E P+Q +L+G D++ A TG GKT AF LP+L + A K
Sbjct: 27 EALVGLGYEEPTPVQRAAIPPLLEGKDVLALAATGTGKTAAFSLPLLTRI------AEKG 80
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
G P VL+L+PTRELA QV E YG +GL + +YGGA Q L++G+DVV
Sbjct: 81 RRAGNGPGVLILVPTRELAMQVAEAVHRYGKPLGLQALAVYGGASMELQVRALRRGVDVV 140
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
I TPGR DHI+RG + L VLDEADEML MGF E++E IL + NK QT LFS
Sbjct: 141 IATPGRAVDHIKRGTLVFDGLSAVVLDEADEMLDMGFAEELEAILDATPE-NK-QTALFS 198
Query: 302 ATLPSWVKHISTKFLKSD---KKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
ATLP + I+ K L+ K ++V + S VR + S R+ +P + R
Sbjct: 199 ATLPPRIGGIAQKHLRQPVHVKVEREVVAEGE---SARVRQVAYVVS---RAHKMPALAR 252
Query: 359 CYSSGGRT--IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMT 412
T I+F T+ +L++ L A ALHG + Q QR+ + FR+ K
Sbjct: 253 VLDIEQPTSAIVFCRTRTEVDELSETLTARGLRAEALHGGLSQDQRDRVMQKFRARKVDL 312
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
L+AT+VAARGLD+ V ++ + P D E Y+HR GRTGRAG GVAV +PR++ + +
Sbjct: 313 LIATDVAARGLDVKHVSHVVNFDVPVDAETYVHRIGRTGRAGREGVAVTFAEPRENRLLR 372
Query: 473 -IERESGVKFEHISAPQPADI 492
IER++G K E P AD+
Sbjct: 373 NIERQTGQKIEIAQVPTVADL 393
>gi|183984161|ref|YP_001852452.1| cold-shock DEAD-box protein, DeaD [Mycobacterium marinum M]
gi|443492292|ref|YP_007370439.1| cold-shock DEAD-box protein, DeaD [Mycobacterium liflandii 128FXT]
gi|183177487|gb|ACC42597.1| cold-shock DEAD-Box protein, DeaD [Mycobacterium marinum M]
gi|442584789|gb|AGC63932.1| cold-shock DEAD-box protein, DeaD [Mycobacterium liflandii 128FXT]
Length = 571
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 168/455 (36%), Positives = 237/455 (52%), Gaps = 56/455 (12%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P + +I + + G ES IQA T ++ GSD+VG A+TG GKT AF +PI
Sbjct: 12 PATFADLQIHPSVMRAIADVGYESPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPI 71
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAP 226
L + T A LVL PTRELA QV E F YG + L +YGG+
Sbjct: 72 LSKIDTTST----------ATQALVLAPTRELALQVAEAFSRYGAHLSRLNVLPVYGGSS 121
Query: 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286
Y Q L++G VV+GTPGR+ DH+ER +DLS + + VLDEADEML MGF EDVE IL
Sbjct: 122 YAIQLAGLRRGAQVVVGTPGRVIDHLERRTLDLSRVDYLVLDEADEMLTMGFAEDVERIL 181
Query: 287 GKVEDANKVQTLLFSATLPSWVKHISTKFL------KSDKKT----------IDLVGNEK 330
+ + +V LFSAT+P ++ I+T++L KS+ KT I + G K
Sbjct: 182 SETPEYKQVA--LFSATMPPAIRKITTRYLHDPLEVKSEAKTATAENISQRYIQVAGPRK 239
Query: 331 MKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----A 386
M A T V V P + I+F TK++ ++A+ L A
Sbjct: 240 MDALTRVLE-VEPFEA-------------------MIVFVRTKQATEEVAEKLRARGFSA 279
Query: 387 RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHR 446
A++GDI Q QRE T+ R G LVAT+VAARGLD+ + ++ + P D E+Y+HR
Sbjct: 280 AAINGDIPQGQRERTITALRDGGIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHR 339
Query: 447 SGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETIT 505
GRTGRAG +G A++ PR+ + K IE+ + P D+ + A++IT
Sbjct: 340 IGRTGRAGRSGAALLFVSPRERHLLKLIEKATRQTLTEAELPTVEDVNAQRVAKFADSIT 399
Query: 506 Q-VSDSVIPAFKSAAEELLNNSGLSAAELLAKALA 539
+S++ I F+ E+ + A+ +A ALA
Sbjct: 400 HALSNTGIELFRRLVEDYEREHNVPMAD-IAAALA 433
>gi|387138413|ref|YP_005694392.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis CIP
52.97]
gi|349734891|gb|AEQ06369.1| DEAD-box helicase [Corynebacterium pseudotuberculosis CIP 52.97]
Length = 829
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 148/399 (37%), Positives = 234/399 (58%), Gaps = 27/399 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T ++++G D++G A+TG GKT AF LPIL + KK R
Sbjct: 85 GFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTAAFALPILSRIN------VKK----RH 134
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P L+L PTRELA QV + F + +G + +YGG Y Q L++G +++GTPG
Sbjct: 135 PQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRRGAQIIVGTPG 194
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED--ANKVQTLLFSATL 304
R+ DH+E+G++D+S+L + VLDEADEML MGF ED+E IL ED A+K Q LFSAT+
Sbjct: 195 RVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERIL---EDTPADK-QVALFSATM 250
Query: 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
P+ ++ +S +++K D + I + + + +TN+ L + + + I+ +
Sbjct: 251 PNGIRRLSKQYMK-DPREIQV--KSETRTNTNITQRFLNVAHRNKLDALTRILEV-TEFE 306
Query: 365 RTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
I+F TK ++A+ L A A++GDI Q+QRE T+ + G+ LVAT+VAA
Sbjct: 307 AMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 366
Query: 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGV 479
RGLD+ + + + P D E+Y+HR GRTGRAG +G A++ PR + + IER +
Sbjct: 367 RGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNA 426
Query: 480 KFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKS 517
+ + P ++ ++ + A++IT+ + DS + F++
Sbjct: 427 ELIEMDLPTVDEVNESRKEKFADSITESLEDSQVAIFRN 465
>gi|307243618|ref|ZP_07525761.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
stomatis DSM 17678]
gi|306492987|gb|EFM64997.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
stomatis DSM 17678]
Length = 538
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 148/387 (38%), Positives = 217/387 (56%), Gaps = 22/387 (5%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
+ ++S ++ ++ G E PIQA +++G D++G+A+TG GKT +F +PILE++
Sbjct: 7 NELQVSEEIKRAIEDLGYEEPSPIQAQAIPCMIEGHDVIGQAQTGTGKTASFSIPILENI 66
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQ 230
R +VL PTRELA QV E+ + G+ + +YGG P Q
Sbjct: 67 DRD----------NRKLQAIVLCPTRELAIQVSEEVRKLAKYMQGIRTLPIYGGQPIDRQ 116
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
LK G+ V IGTPGR+ DHI R + L +K VLDEADEML MGF ED+E IL V
Sbjct: 117 IKALKGGVQVAIGTPGRVIDHINRKTLKLDQVKMVVLDEADEMLDMGFREDIETILSNVP 176
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
+ QT LFSAT+P + ++ K+ K D I +V K +N++ + S +
Sbjct: 177 EER--QTALFSATMPKAILELTKKYQK-DPVHIKVV--RKTLTVSNIKQYYIETRKSNKL 231
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFR 406
+V+ ++ Y+ T++FT TK+ A +L L GA +LHGD++Q QR++ + FR
Sbjct: 232 EVLTRLLDVYNPK-LTVVFTNTKKGADELVSSLQARGYGADSLHGDLKQVQRDIVMDKFR 290
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
+G LVAT+VAARG+DI+DV+ +I E P+D E Y+HR GRTGRAG G+A R
Sbjct: 291 AGTIDILVATDVAARGIDIDDVECVINYELPQDDEYYVHRIGRTGRAGREGIAFSFAFGR 350
Query: 467 K-SSVSKIERESGVKFEHISAPQPADI 492
+ + IER + K P D+
Sbjct: 351 EMRKLKDIERYTKSKIVKHDIPSVNDV 377
>gi|296169013|ref|ZP_06850678.1| ATP-dependent RNA helicase DeaD, partial [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295896310|gb|EFG75967.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length = 443
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 151/366 (41%), Positives = 211/366 (57%), Gaps = 28/366 (7%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNG-PTKASKKT 182
L KGIE F IQ +T + L G DL+G+ARTG GKTLAF +P+L +T G +A T
Sbjct: 25 LAEKGIERPFAIQELTLPLALAGDDLIGQARTGMGKTLAFGVPLLNRITAGVGVRALNGT 84
Query: 183 GYGRAPSVLVLLPTRELAKQVHEDFD---VYGGAVG---LTSCCLYGGAPYHAQEFKLKK 236
P LV++PTREL QVH D Y A G L+ +YGG PY Q L+
Sbjct: 85 -----PRALVVVPTRELCLQVHGDLSDAAKYLKAEGDRPLSVVSIYGGRPYEPQIEALRA 139
Query: 237 GIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQ 296
G DVV+GTPGR+ D ++G++ L L VLDEADEML +GF+ D+E IL ++ + Q
Sbjct: 140 GADVVVGTPGRLLDLSQQGHLQLGGLSMLVLDEADEMLDLGFLPDIERILRQIPEER--Q 197
Query: 297 TLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVLPCSSSARSQVIP 354
++LFSAT+P + ++ F+ + + A+T+ V + + +++
Sbjct: 198 SMLFSATMPGPIITLARTFMN---QPTHIRAEAPHSAATHDTTEQFVYRAHALDKVEMVS 254
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410
I++ G T+IFT TK +A ++AD L A+HGD+ Q RE L FR+G
Sbjct: 255 RILQAEGRGA-TMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQIAREKALKAFRNGDI 313
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PR 466
LVAT+VAARG+DI+D+ +I + P D +AY+HR GRTGRAG TG+AV L D PR
Sbjct: 314 DVLVATDVAARGIDIDDITHVINYQIPEDEQAYVHRIGRTGRAGKTGIAVTLVDWDELPR 373
Query: 467 KSSVSK 472
S + K
Sbjct: 374 WSMIDK 379
>gi|89053691|ref|YP_509142.1| DEAD/DEAH box helicase [Jannaschia sp. CCS1]
gi|88863240|gb|ABD54117.1| DEAD/DEAH box helicase-like protein [Jannaschia sp. CCS1]
Length = 644
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 148/348 (42%), Positives = 194/348 (55%), Gaps = 20/348 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES PIQA L G D++G A+TG GKT +F LP++ L G +A R
Sbjct: 30 GYESPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPMITMLARGRARA-------RM 82
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGR 247
P LVL PTRELA QV E+FD+Y V LT L GG + QE + KG+DV+I TPGR
Sbjct: 83 PRSLVLCPTRELAAQVAENFDIYAKHVKLTKALLIGGVSFKEQEQAIDKGVDVLIATPGR 142
Query: 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSW 307
+ DH ERG + L+ +K V+DEAD ML MGF+ D+E I G V QTL FSAT+
Sbjct: 143 LLDHFERGKLILNDVKVMVVDEADRMLDMGFIPDIERIFGLVPFTR--QTLFFSATMAPE 200
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS-SSARSQVIPDIIRCYSSG--- 363
++ I+ FL + +K I++ A+ R I A++++ D++R +
Sbjct: 201 IERITNTFLSNPEK-IEVERQSTTSATIEQRLIEFKAPRRDAQAKMKRDMLRAAITAEGD 259
Query: 364 --GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
IIF K +A L A +HGD+ QS R TLAGFR G LVA++
Sbjct: 260 AFRNAIIFCNRKVDVDIVAKSLKKHNLNAEPIHGDLDQSHRMRTLAGFRDGSITLLVASD 319
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
VAARGLDI +V +I + P E Y+HR GRTGRAG TGVA+ L P
Sbjct: 320 VAARGLDIPNVSHVINYDVPSHAEDYVHRIGRTGRAGKTGVAITLCVP 367
>gi|149240601|ref|XP_001526175.1| ATP-dependent RNA helicase ded1 [Lodderomyces elongisporus NRRL
YB-4239]
gi|152013500|sp|A5DZE6.1|DED1_LODEL RecName: Full=ATP-dependent RNA helicase DED1
gi|146450298|gb|EDK44554.1| ATP-dependent RNA helicase ded1 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 664
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 144/364 (39%), Positives = 206/364 (56%), Gaps = 15/364 (4%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKA 178
L E +K P+Q + +V G DL+ A+TG GKT F+ P+L ES NGP
Sbjct: 186 LVENIKLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMNGPAPI 245
Query: 179 SKKTG----YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ TG + P++LV+ PTREL Q++++ + + C +YGGA Q +L
Sbjct: 246 PESTGAFSSHKVYPTILVMAPTRELVSQIYDESKKFAYRSWVRPCVVYGGADIGNQIRQL 305
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE--DA 292
+G D+++ TPGR+KD +ERG + L+++K+ VLDEAD ML MGF + I+ + + D
Sbjct: 306 DRGCDLLVATPGRLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQIRHIVQECDMPDV 365
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
QTL+FSAT P ++ ++ FLK I L S N+ VL + V
Sbjct: 366 QDRQTLMFSATFPRDIQMLARDFLKD---YIFLSVGRVGSTSENITQKVLYVEDEEKKSV 422
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSG 408
I D++ +S G TI+FTETK A LAD L A A+HGD Q +RE LA F+SG
Sbjct: 423 ILDLLNA-NSEGLTIVFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSG 481
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS 468
+ LVAT VAARGLDI +V +I + P D++ Y+HR GRTGRAGN G+A ++
Sbjct: 482 QAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNK 541
Query: 469 SVSK 472
++ K
Sbjct: 542 NIVK 545
>gi|451943504|ref|YP_007464140.1| hypothetical protein A605_03835 [Corynebacterium halotolerans YIM
70093 = DSM 44683]
gi|451902891|gb|AGF71778.1| hypothetical protein A605_03835 [Corynebacterium halotolerans YIM
70093 = DSM 44683]
Length = 411
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 143/350 (40%), Positives = 205/350 (58%), Gaps = 16/350 (4%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L + GI F IQ +T + LDG+DL+G+ARTG GKT AF +P+L+ + + ++
Sbjct: 5 EALAAVGITRTFAIQELTLPLALDGTDLIGQARTGMGKTYAFGVPLLDRVFD----SADI 60
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
+P LV++PTRELA QV D +V + + +YGG PY Q L +G+DVV
Sbjct: 61 EELDGSPRALVVVPTRELAVQVGRDLEVAAAKLPVRLATIYGGRPYEEQIEALTEGVDVV 120
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
+GTPGR+ D RG + L + VLDEADEML +GF+ D+E IL + ++ QT+LFS
Sbjct: 121 VGTPGRLLDLHNRGELKLDKVAVLVLDEADEMLDLGFLPDIEKILAAL--THQHQTMLFS 178
Query: 302 ATLPSWVKHISTKFLKSDKKT-IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
AT+P + +S F+ ++ G+ + ++T +V + V I++
Sbjct: 179 ATMPGPILSLSRTFMNRPVHIRAEMTGSAQTHSTTE--QVVFQAHRMDKPAVTARILQAR 236
Query: 361 SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
GRTIIF TK +A+ +A+ L G A+HGD+ Q RE +L FR G LVAT
Sbjct: 237 GR-GRTIIFARTKRTAADVAEELAGRGFAVGAVHGDMGQPARERSLKAFRDGTVDILVAT 295
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML--YD 464
+VAARG+DI DV +I + P D Y+HR GRTGRAG++G+AV L YD
Sbjct: 296 DVAARGIDITDVTHVINYQTPDDPMTYVHRIGRTGRAGHSGIAVTLVGYD 345
>gi|163839948|ref|YP_001624353.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
gi|162953424|gb|ABY22939.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
Length = 565
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 142/380 (37%), Positives = 214/380 (56%), Gaps = 17/380 (4%)
Query: 94 EAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRA 153
EA E +E + F + + E L GI FPIQ+MT + L G D++G+A
Sbjct: 21 EASPTTTEDPHAEAAETFADFNVRADIVEALADAGIVHPFPIQSMTLPVALGGHDIIGQA 80
Query: 154 RTGQGKTLAFVLPILESLTNGPTKASKKTGYGR-----APSVLVLLPTRELAKQVHEDFD 208
+TG GKTL F +P+L+ +T A K GY AP L+++PTRELA QV D
Sbjct: 81 KTGTGKTLGFGVPVLQRVT-----APKDEGYDALPVPGAPQALIVVPTRELAVQVANDLQ 135
Query: 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268
G +YGG + Q L KG++VV+GTPGR+ D ++ +++L +++ VLD
Sbjct: 136 TAARKRGARITTIYGGRAFEPQIESLTKGVEVVVGTPGRLIDLFKQRHLNLKNVRMVVLD 195
Query: 269 EADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
EADEML +GF+ DVE ++ QT+LFSAT+P + ++ +++ +
Sbjct: 196 EADEMLDLGFLPDVETLMAATPAVR--QTMLFSATMPGPIVAMARRYMTQPTHIRAADPD 253
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---- 384
++ ++R +V S + +V+ I++ GRTIIFT+TK +A+++A+ L
Sbjct: 254 DEGLTKRDIRQLVYRAHSMDKIEVVARILQARGR-GRTIIFTKTKRTAAKVAEELAERGF 312
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444
+ A+HGD+ Q RE L FR+ K LVAT+VAARG+D++DV +I + D + Y+
Sbjct: 313 ASAAIHGDLGQGAREQALRAFRNNKVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYL 372
Query: 445 HRSGRTGRAGNTGVAVMLYD 464
HR GRTGRAGN G AV D
Sbjct: 373 HRVGRTGRAGNKGTAVTFVD 392
>gi|323307275|gb|EGA60555.1| Ded1p [Saccharomyces cerevisiae FostersO]
Length = 605
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 146/367 (39%), Positives = 210/367 (57%), Gaps = 21/367 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKA 178
L E +K P+Q + +V +G DL+ A+TG GKT F+ P+L ES GP+
Sbjct: 154 LLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQ 213
Query: 179 SKKTG--YGR--APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ G Y R P+ +++ PTRELA Q+ ++ + + +C +YGG+P Q ++
Sbjct: 214 PESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREI 273
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G D+++ TPGR+ D +ERG I L+++K+ VLDEAD ML MGF + I VED +
Sbjct: 274 ERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHI---VEDCDM 330
Query: 295 V-----QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
QTL+FSAT P+ ++H++ FL I L S N+ VL + +
Sbjct: 331 TPVGERQTLMFSATFPADIQHLARDFLSD---YIFLSVGRVGSTSENITQKVLYVENQDK 387
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGF 405
+ D++ S+ G T+IF ETK A QL D L A A+HGD QS+RE LA F
Sbjct: 388 KSALLDLLSA-STDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAF 446
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
RSG LVAT VAARGLDI +V +I + P DV+ Y+HR GRTGRAGNTG+A ++
Sbjct: 447 RSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNS 506
Query: 466 RKSSVSK 472
S++ K
Sbjct: 507 ENSNIVK 513
>gi|160380641|sp|A6ZP47.1|DED1_YEAS7 RecName: Full=ATP-dependent RNA helicase DED1
gi|151945294|gb|EDN63537.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
gi|190407515|gb|EDV10782.1| hypothetical protein SCRG_01592 [Saccharomyces cerevisiae RM11-1a]
gi|207341041|gb|EDZ69208.1| YOR204Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256269590|gb|EEU04872.1| Ded1p [Saccharomyces cerevisiae JAY291]
gi|323335425|gb|EGA76711.1| Ded1p [Saccharomyces cerevisiae Vin13]
gi|323352139|gb|EGA84676.1| Ded1p [Saccharomyces cerevisiae VL3]
Length = 604
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 146/367 (39%), Positives = 210/367 (57%), Gaps = 21/367 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKA 178
L E +K P+Q + +V +G DL+ A+TG GKT F+ P+L ES GP+
Sbjct: 153 LLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQ 212
Query: 179 SKKTG--YGR--APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ G Y R P+ +++ PTRELA Q+ ++ + + +C +YGG+P Q ++
Sbjct: 213 PESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREI 272
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G D+++ TPGR+ D +ERG I L+++K+ VLDEAD ML MGF + I VED +
Sbjct: 273 ERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHI---VEDCDM 329
Query: 295 V-----QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
QTL+FSAT P+ ++H++ FL I L S N+ VL + +
Sbjct: 330 TPVGERQTLMFSATFPADIQHLARDFLSD---YIFLSVGRVGSTSENITQKVLYVENQDK 386
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGF 405
+ D++ S+ G T+IF ETK A QL D L A A+HGD QS+RE LA F
Sbjct: 387 KSALLDLLSA-STDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAF 445
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
RSG LVAT VAARGLDI +V +I + P DV+ Y+HR GRTGRAGNTG+A ++
Sbjct: 446 RSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNS 505
Query: 466 RKSSVSK 472
S++ K
Sbjct: 506 ENSNIVK 512
>gi|340751823|ref|ZP_08688633.1| ATP-dependent RNA helicase [Fusobacterium mortiferum ATCC 9817]
gi|229420786|gb|EEO35833.1| ATP-dependent RNA helicase [Fusobacterium mortiferum ATCC 9817]
Length = 545
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 163/440 (37%), Positives = 237/440 (53%), Gaps = 27/440 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGS-DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKT 182
L KG E PIQA+T +L+G D++G+A+TG GKT AF LPILE+ P+K +
Sbjct: 20 LAKKGYEQPTPIQALTIPALLNGDKDIIGQAQTGTGKTAAFSLPILENFE--PSKVIQ-- 75
Query: 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
+VL PTRELA QV E+ + + +YGG Q +LKKG D+++
Sbjct: 76 -------AIVLAPTRELALQVAEEMNSLAHGKKIRITPVYGGQSIEFQIRQLKKGTDIIV 128
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ D +ER I L LK+ +LDEADEML MGFVED+E IL + ++ L FSA
Sbjct: 129 GTPGRVIDLMERKLIKLQDLKYFILDEADEMLNMGFVEDIEKILEATNEDKRM--LFFSA 186
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ + I+ +K D + + + E T+ I + + + II +
Sbjct: 187 TMPNEIMKIAKNHMK-DYEVLAVKARELTTDLTD--QIYFEVHEKDKFEALCRIIDL-TR 242
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
I+F TK A+ L L A LHGDI Q+ REVTL F++ K LVAT+V
Sbjct: 243 DFYGIVFCRTKNDANDLVGKLNDRGYDAEGLHGDISQNYREVTLKRFKAKKINVLVATDV 302
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK-SSVSKIERES 477
AARG+D+ND+ +I P++ E+Y+HR GRTGRAG G A+ P++ + +I+R
Sbjct: 303 AARGIDVNDLSHVINYSIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQIQRIV 362
Query: 478 GVKFEHISAPQPADIAKAAGVEAAETITQV-SDSVIPAFKSAAEELLNNSGLSAAELLAK 536
+ P+ D+ +A E + + ++ FK A+ELLN G A +L+A
Sbjct: 363 KTEIRKERVPEIKDVIQAKKFRLMEELNNILAEGNYDNFKDFAKELLN--GEQALDLVA- 419
Query: 537 ALAKAVVSAFLFSSSSNSLS 556
AL K L ++ N +S
Sbjct: 420 ALLKHAYDDILDENNYNEIS 439
>gi|410626947|ref|ZP_11337693.1| ATP-dependent RNA helicase DeaD [Glaciecola mesophila KMM 241]
gi|410153326|dbj|GAC24462.1| ATP-dependent RNA helicase DeaD [Glaciecola mesophila KMM 241]
Length = 583
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 161/445 (36%), Positives = 243/445 (54%), Gaps = 58/445 (13%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL--TNGPTK 177
L + L+ G E PIQA ++++G DL+G A+TG GKT AF LP+L ++ N T+
Sbjct: 18 LLQALEKVGYEKPTPIQAQCIPLIMEGHDLLGTAQTGTGKTAAFALPMLANVDANNSNTQ 77
Query: 178 ASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKK 236
+LVL PTRELA QV E F VY + + +YGG+ Y Q +L++
Sbjct: 78 ------------LLVLAPTRELAIQVAEAFQVYASFSRKINVLPIYGGSSYDNQIRQLRR 125
Query: 237 GIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQ 296
G VV+GTPGR+ DHI++G + L +LKF VLDEADEMLRMGF++DVE IL + Q
Sbjct: 126 GAQVVVGTPGRVIDHIKKGTLKLDNLKFLVLDEADEMLRMGFIDDVEWILSHA--PAERQ 183
Query: 297 TLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDI 356
T LFSAT+P ++ I+ ++L SD K + + K+ ++ ++ + + + + I
Sbjct: 184 TALFSATMPDPIRKITKRYL-SDPKQVKI--ESKVATASTIKQRYCQVAGHHKLEALTRI 240
Query: 357 IRCYSSGGRTIIFTETKESASQLADLLPGARA-----LHGDIQQSQREVTLAGFRSGKFM 411
+ IIF TK + +L++ L AR L+GDI Q+ RE T+ + GK
Sbjct: 241 MEVEEFDA-VIIFVRTKTATMELSEKL-SARGYAVEPLNGDIPQNSRERTVERLKRGKID 298
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSV 470
LVAT+V ARGLD+ V +I + P D E+Y+HR GRTGRAG TG A++ R K +
Sbjct: 299 ILVATDVVARGLDVERVSHVINYDVPYDTESYVHRIGRTGRAGRTGDAILFISHREKRML 358
Query: 471 SKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGL-- 528
IER + + + P +I+Q++++ + FKS+ E +++S +
Sbjct: 359 FSIERATRQSIDPMPIP---------------SISQLNETRLSRFKSSVIEAISDSSIET 403
Query: 529 -------------SAAELLAKALAK 540
+A E++ ALAK
Sbjct: 404 LIPIVESIQAETEAAPEVIMAALAK 428
>gi|297847866|ref|XP_002891814.1| hypothetical protein ARALYDRAFT_474570 [Arabidopsis lyrata subsp.
lyrata]
gi|297337656|gb|EFH68073.1| hypothetical protein ARALYDRAFT_474570 [Arabidopsis lyrata subsp.
lyrata]
Length = 501
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 140/364 (38%), Positives = 206/364 (56%), Gaps = 18/364 (4%)
Query: 108 PNAVSRFR-ISVP--LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
P V FR + P + E++K G PIQ+ + M + G DL+G A TG GKT++++
Sbjct: 95 PKPVKSFRDVGFPDYVLEEIKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTISYL 154
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
LP + + P A G P VLVL PTRELA Q+ ++ +G + + S C+YGG
Sbjct: 155 LPAIVHVNAQPILAP-----GDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKSTCIYGG 209
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
P Q L+KG+++VI TPGR+ D +E N +L + + VLDEAD ML MGF +
Sbjct: 210 VPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRK 269
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344
I+ + QTL +SAT P V+ +S KFL + K I +G+ +KA+ +R IV
Sbjct: 270 IVSHIRPDR--QTLYWSATWPKEVEQLSKKFLYNPYKVI--IGSSDLKANRAIRQIVDVI 325
Query: 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA-----DLLPGARALHGDIQQSQRE 399
S S + + ++ G R ++F +TK+ Q+ D P A ++HGD Q++R+
Sbjct: 326 SESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQITRQLRMDGWP-ALSIHGDKSQAERD 384
Query: 400 VTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 459
L+ FRSGK + AT+VAARGLD+ DV+ +I + P +E Y+HR GRTGRAG G A
Sbjct: 385 WVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTA 444
Query: 460 VMLY 463
+
Sbjct: 445 YTFF 448
>gi|227503818|ref|ZP_03933867.1| superfamily II helicase [Corynebacterium striatum ATCC 6940]
gi|227199642|gb|EEI79690.1| superfamily II helicase [Corynebacterium striatum ATCC 6940]
Length = 678
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 142/363 (39%), Positives = 214/363 (58%), Gaps = 28/363 (7%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQ T ++++G D+VG A+TG GKT AF LP+L S+ R P LVL
Sbjct: 79 PIQEQTIPILMEGRDVVGLAQTGTGKTAAFALPVL----------SQVDPEVRHPQALVL 128
Query: 194 LPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI 252
PTRELA QV + F + +G + +YGG Y Q L++G +++GTPGR+ DH+
Sbjct: 129 APTRELALQVADSFQSFADHLGRIEVLPIYGGQAYGIQLSGLRRGAQIIVGTPGRVIDHL 188
Query: 253 ERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA-NKVQTLLFSATLPSWVKHI 311
E+G++D+S L+F VLDEADEML MGF EDVE IL ED + Q LFSAT+P+ ++ +
Sbjct: 189 EKGSLDISQLRFLVLDEADEMLNMGFQEDVERIL---EDTPEEKQVALFSATMPNSIRRL 245
Query: 312 STKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS--SARSQVIPDIIRCYSSGGRTIIF 369
S ++L +D + + + + R+++ P A ++++ ++I Y + I+F
Sbjct: 246 SKQYL-NDPAEVTVKSERRTNDNITQRYLLTPHRQKMDAFTRIL-EVIE-YDA---IIVF 299
Query: 370 TETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDI 425
TK ++AD L A A++GDI Q QRE T+ + G+ LVAT+VAARGLD+
Sbjct: 300 CRTKHETEEVADSLRDAGYNAAAINGDIAQQQRERTVDQLKDGRLDILVATDVAARGLDV 359
Query: 426 NDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHI 484
+ + ++ + P D E+Y+HR GRTGRAG TG A++ PR + + IER + + E +
Sbjct: 360 DRITHVVNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERVTNARLEEM 419
Query: 485 SAP 487
P
Sbjct: 420 DLP 422
>gi|120555341|ref|YP_959692.1| DEAD/DEAH box helicase [Marinobacter aquaeolei VT8]
gi|387813240|ref|YP_005428722.1| ATP-dependent RNA helicase, cold shock protein A [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|120325190|gb|ABM19505.1| ATP-dependent RNA helicase CsdA [Marinobacter aquaeolei VT8]
gi|381338252|emb|CCG94299.1| ATP-dependent RNA helicase, cold shock protein A [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 528
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 149/380 (39%), Positives = 207/380 (54%), Gaps = 24/380 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E + + G E+ PIQA + +L G+ L+G A+TG GKT AF LP+L + +
Sbjct: 37 EAVSAVGYETPSPIQAQSIPALLAGNHLLGVAQTGTGKTAAFALPLLSRIDANVAE---- 92
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDV 240
P +LVL PTRELA QV E F Y +YGG + Q LK+G V
Sbjct: 93 ------PQILVLAPTRELAIQVAEAFTTYASKFRNFHVLPIYGGQDFSPQIRGLKRGAQV 146
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
++GTPGR+ DH+ +G + L LK VLDEADEMLRMGF++DVE IL K D Q LF
Sbjct: 147 IVGTPGRMLDHLRKGTLKLDGLKALVLDEADEMLRMGFIDDVEAILAKTPDT--CQRALF 204
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P +K ++ +LK+ ++ + + + VLP + + + I+
Sbjct: 205 SATMPPQIKKVAQTYLKN---ATEVRIESETRTVERIAQFVLPVYAERKLDALTRILEVE 261
Query: 361 SSGGRTIIFTETKESASQLADLLPGARA-----LHGDIQQSQREVTLAGFRSGKFMTLVA 415
+IIF TK + LA+ L AR L GD+ Q QRE T+ + GK ++A
Sbjct: 262 PFDA-SIIFVRTKAETTMLAEKL-SARGHAVAPLSGDLNQRQREQTVEDLKRGKKDIIIA 319
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIE 474
T+VAARGLD+ + +I + P D EAYIHR GRTGRAG TG A++L PR +S + +E
Sbjct: 320 TDVAARGLDVPRITHVINYDVPYDTEAYIHRVGRTGRAGRTGKAILLVTPRERSWLRTLE 379
Query: 475 RESGVKFEHISAPQPADIAK 494
R + E P PA + K
Sbjct: 380 RATNSPMEPYQLPSPAALQK 399
>gi|357018629|ref|ZP_09080894.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium thermoresistibile ATCC 19527]
gi|356481572|gb|EHI14675.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium thermoresistibile ATCC 19527]
Length = 564
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 143/371 (38%), Positives = 212/371 (57%), Gaps = 22/371 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ IQA T ++ GSD+VG A+TG GKT AF +PIL SK RA
Sbjct: 25 GYETPSAIQAATIPAMMAGSDVVGLAQTGTGKTAAFAIPIL----------SKIDTASRA 74
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
LVL PTRELA QV E F YG + + +YGG+ Y Q L++G +V+GTPG
Sbjct: 75 TQALVLAPTRELALQVAEAFGRYGAHLPDVQVLPIYGGSSYTVQLSGLRRGAQIVVGTPG 134
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH++RG +DLS L + VLDEADEML+MGF EDVE IL + +V LFSAT+P+
Sbjct: 135 RVIDHLDRGTLDLSRLDYLVLDEADEMLQMGFAEDVERILADTPEYKQVA--LFSATMPA 192
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ ++TK+L +++ + + N+ + + + + ++
Sbjct: 193 AIRKLTTKYLHD---PVEVTVKARTATAENITQRFIQVAGPRKMDALTRVLETEPFEA-M 248
Query: 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK++ +LA+ L A A++GDI Q+QRE T+A + G L+AT+VAARG
Sbjct: 249 IVFVRTKQATEELAERLRSRGFAAAAINGDIAQAQRERTIAALKDGSLDILIATDVAARG 308
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKF 481
LD++ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + K IE+ + K
Sbjct: 309 LDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALLFVTPRERHLLKAIEKHTRSKV 368
Query: 482 EHISAPQPADI 492
P D+
Sbjct: 369 LEAEMPTVDDV 379
>gi|169347296|ref|ZP_02866234.1| hypothetical protein CLOSPI_00011 [Clostridium spiroforme DSM 1552]
gi|169293913|gb|EDS76046.1| DEAD/DEAH box helicase [Clostridium spiroforme DSM 1552]
Length = 531
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 147/407 (36%), Positives = 225/407 (55%), Gaps = 24/407 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASK-KT 182
+K G IQ ++L G D +G+A+TG GKTLAF G SK K
Sbjct: 19 IKDMGFSKPSQIQEKAIPILLTGVDAIGQAQTGTGKTLAF----------GSVLLSKIKP 68
Query: 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
R P ++L PTRELA Q+HE+ + G G C++GG+ Q +KKG+D+V+
Sbjct: 69 IDDRFPQAIILSPTRELAMQIHEEMNRIGKHNGSKIVCVFGGSDIEKQIRSIKKGVDIVV 128
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ D + R + ++K+ VLDEADEML MGFVED+E IL KV+DA QT+LFSA
Sbjct: 129 GTPGRVMDLMRRKVLKFDNVKYVVLDEADEMLNMGFVEDIETILEKVDDAR--QTILFSA 186
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ +K I+ ++ D K + ++ K +T+V+ R + + +I ++
Sbjct: 187 TMPAGIKKIAQNYMHDDFKHVAVLS--KQTTATSVKQFYYEVKPKDRFETLCRLIDV-AN 243
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
IIF TK S ++ + + A+HGD+ Q+ R TL F+ G LVAT+V
Sbjct: 244 IKTGIIFCRTKRSVDEVTEQMQQSNYNVEAMHGDLNQNHRMNTLRKFKKGTINFLVATDV 303
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS-VSKIERES 477
AARG+D+ +V +I E P+D+E+Y+HR GRTGRA G+A + P++ S + +IER +
Sbjct: 304 AARGIDVENVTHVINYELPQDIESYVHRIGRTGRADKEGLAYSIISPKEVSFLKQIERVT 363
Query: 478 GVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLN 524
++ P +I +A I+ V D ++ ++L+N
Sbjct: 364 KSTITKVNVPTLQEIFEA---RIGALISDVEDVILAGNHKRFKQLVN 407
>gi|126434048|ref|YP_001069739.1| DEAD/DEAH box helicase [Mycobacterium sp. JLS]
gi|126233848|gb|ABN97248.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. JLS]
Length = 507
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 147/362 (40%), Positives = 205/362 (56%), Gaps = 22/362 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L +GI F IQ +T M L G DL+G+ARTG GKT AF +P+L+ +T K + +G
Sbjct: 25 LAEEGIHQPFAIQELTLPMALAGDDLIGQARTGMGKTYAFGVPLLQRVTTDTEK--ELSG 82
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDV-----YGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
RA L+++PTREL QVH D + G L+ +YGG PY Q L+KG
Sbjct: 83 IPRA---LIVVPTRELCLQVHSDLSLAAKYLTAGDRKLSVVSIYGGRPYEPQIESLRKGA 139
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
DVV+GTPGR+ D ++G++ L L VLDEADEML +GF+ D+E IL + D Q +
Sbjct: 140 DVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQTPDTR--QAM 197
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P + ++ F+ I + + + +++ I++
Sbjct: 198 LFSATMPDPIITLARTFMNQPTH-IRAESPQSSATHDTTAQFAYRAHALDKVEMVSRILQ 256
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G T+IFT TK +A ++AD L A+HGD+ Q RE L FR+G+ LV
Sbjct: 257 ADGRGA-TMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQGAREKALKSFRTGEVDVLV 315
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PRKSSV 470
AT+VAARG+DI+D+ +I + P D +AY+HR GRTGRAG TGVAV L D PR S +
Sbjct: 316 ATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGVAVTLVDWDELPRWSMI 375
Query: 471 SK 472
K
Sbjct: 376 DK 377
>gi|398365729|ref|NP_014847.3| Ded1p [Saccharomyces cerevisiae S288c]
gi|118411|sp|P06634.2|DED1_YEAST RecName: Full=ATP-dependent RNA helicase DED1; AltName: Full=DEAD
box protein 1
gi|3647|emb|CAA40546.1| Ded1p (Spp81p) [Saccharomyces cerevisiae]
gi|1420479|emb|CAA99419.1| DED1 [Saccharomyces cerevisiae]
gi|285815083|tpg|DAA10976.1| TPA: Ded1p [Saccharomyces cerevisiae S288c]
Length = 604
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 146/367 (39%), Positives = 210/367 (57%), Gaps = 21/367 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKA 178
L E +K P+Q + +V +G DL+ A+TG GKT F+ P+L ES GP+
Sbjct: 153 LLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQ 212
Query: 179 SKKTG--YGR--APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ G Y R P+ +++ PTRELA Q+ ++ + + +C +YGG+P Q ++
Sbjct: 213 PESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREI 272
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G D+++ TPGR+ D +ERG I L+++K+ VLDEAD ML MGF + I VED +
Sbjct: 273 ERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHI---VEDCDM 329
Query: 295 V-----QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
QTL+FSAT P+ ++H++ FL I L S N+ VL + +
Sbjct: 330 TPVGERQTLMFSATFPADIQHLARDFLSD---YIFLSVGRVGSTSENITQKVLYVENQDK 386
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGF 405
+ D++ S+ G T+IF ETK A QL D L A A+HGD QS+RE LA F
Sbjct: 387 KSALLDLLSA-STDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAF 445
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
RSG LVAT VAARGLDI +V +I + P DV+ Y+HR GRTGRAGNTG+A ++
Sbjct: 446 RSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNS 505
Query: 466 RKSSVSK 472
S++ K
Sbjct: 506 ENSNIVK 512
>gi|443624408|ref|ZP_21108880.1| putative Helicase [Streptomyces viridochromogenes Tue57]
gi|443342098|gb|ELS56268.1| putative Helicase [Streptomyces viridochromogenes Tue57]
Length = 782
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 208/365 (56%), Gaps = 20/365 (5%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L++ GI + FPIQ MT + L G+D++G+A+TG GKTL F LP+LE +T A +
Sbjct: 43 EALEAVGITTPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVT---VPADVE 99
Query: 182 TGYGR------APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
G + AP LV++PTREL QV D G + +YGG Y Q LK
Sbjct: 100 AGRAKPEALTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALK 159
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
KG+DV++GTPGR+ D + ++L+ +K VLDEADEML +GF+ DVE I+ + +
Sbjct: 160 KGVDVIVGTPGRLLDLAGQKKLNLTHIKALVLDEADEMLDLGFLPDVEKIINMLP--ARR 217
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QT+LFSAT+P V ++ +++ +++ N+ V + + +++
Sbjct: 218 QTMLFSATMPGAVIGLARRYMSQPTHIRATAPDDEGVTVANIAQHVYRAHNMDKPEMVAR 277
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411
I++ G ++F TK +A+ LAD L + A+HGD+ Q RE L FR+GK
Sbjct: 278 ILQA-DGRGLAMVFCRTKRTAADLADQLQQRGFASGAVHGDLGQGAREQALRAFRNGKVD 336
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PRK 467
LV T+VAARG+D+ V +I + P + + Y+HR GRTGRAGN G+A+ L D PR
Sbjct: 337 VLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGNKGIAITLVDWDDIPRW 396
Query: 468 SSVSK 472
++K
Sbjct: 397 QLINK 401
>gi|344301404|gb|EGW31716.1| hypothetical protein SPAPADRAFT_51698 [Spathaspora passalidarum
NRRL Y-27907]
Length = 644
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 148/380 (38%), Positives = 211/380 (55%), Gaps = 20/380 (5%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLF----PIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
P A+++F + PL L S F P+Q + +V G DL+ A+TG GKT F
Sbjct: 161 PEAITQF-TAPPLDPLLVENITLSRFTKPTPVQKYSVPIVTGGRDLMACAQTGSGKTGGF 219
Query: 164 VLPIL-ESLTNGPTKASKKTG----YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTS 218
+ P+L ES +GP + TG Y + P+ LV+ PTREL Q++++ + +
Sbjct: 220 LFPVLSESFKSGPAPIPEATGTFSSYKKYPTALVMAPTRELVSQIYDEAKKFAYRSWVRP 279
Query: 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF 278
C +YGGA Q + KG D+++ TPGR+KD +ERG I LS++K+ VLDEAD ML MGF
Sbjct: 280 CVVYGGADIGEQIRNIGKGCDLLVATPGRLKDLLERGRISLSNIKYLVLDEADRMLDMGF 339
Query: 279 VEDVELILGKVE--DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN 336
+ I+ + + D N QTL+FSAT P ++ ++ FLK + L S N
Sbjct: 340 EPQIRHIVQECDMPDVNNRQTLMFSATFPRDIQLLAHDFLKD---YVFLSVGRVGSTSEN 396
Query: 337 VRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGD 392
+ +L + VI D++ G TI+FTETK A LAD L A A+HGD
Sbjct: 397 ITQKILYVEDDEKKSVILDLLSA-GDAGLTIVFTETKRMADNLADFLYDQGFPATAIHGD 455
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
Q +RE LA F++G LVAT VAARGLDI +V +I + P D++ Y+HR GRTGR
Sbjct: 456 RTQYEREKALAAFKNGAAPILVATAVAARGLDIPNVAHVINYDLPSDIDDYVHRIGRTGR 515
Query: 453 AGNTGVAVMLYDPRKSSVSK 472
AGN G+A ++ ++ K
Sbjct: 516 AGNVGIATAFFNRNNKNIIK 535
>gi|284044842|ref|YP_003395182.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
gi|283949063|gb|ADB51807.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
14684]
Length = 590
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 150/378 (39%), Positives = 207/378 (54%), Gaps = 16/378 (4%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L + L G E PIQ +L+G DL+G+A TG GKT AF LPIL+ + G
Sbjct: 26 LLDALTGLGYEEPTPIQREAIPPLLEGRDLLGQAATGTGKTAAFALPILQRMEPG----- 80
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
++ G P LVL+PTRELA QV E YG ++G +YGG P Q LK+G+D
Sbjct: 81 -RSAIG--PLALVLVPTRELAVQVSEALHRYGRSLGARVLPIYGGQPIGRQLNALKRGVD 137
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+GTPGR+ DHI R + L L+ VLDEADEML MGF ED+E IL + D + QT+L
Sbjct: 138 VVVGTPGRVLDHISRNTLRLDELRIVVLDEADEMLDMGFAEDIESILAETPDGGR-QTVL 196
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSAT+P + I+ L SD I++ + VR + + + + ++
Sbjct: 197 FSATMPPRIDRIARAHL-SDPVRIEIARETSAGDTPLVRQSAYVVARAHKPAALGRVLDV 255
Query: 360 YSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
S I+F T++ QL + L G A ALHG + Q QR+ +A R+G LVA
Sbjct: 256 ESPTA-AIVFCRTRDEVDQLTETLNGRGYRAEALHGGMTQEQRDRVMARLRNGTADLLVA 314
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IE 474
T+VAARGLD+ + ++ + P E+Y+HR GR GRAG G A+ L +PR+ K IE
Sbjct: 315 TDVAARGLDVEQLTHVVNYDVPSSPESYVHRIGRVGRAGREGAAITLAEPREHRYLKTIE 374
Query: 475 RESGVKFEHISAPQPADI 492
R + + P AD+
Sbjct: 375 RVTKQRIAIEKIPTVADL 392
>gi|323302935|gb|EGA56739.1| Ded1p [Saccharomyces cerevisiae FostersB]
Length = 604
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 146/367 (39%), Positives = 210/367 (57%), Gaps = 21/367 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKA 178
L E +K P+Q + +V +G DL+ A+TG GKT F+ P+L ES GP+
Sbjct: 153 LLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQ 212
Query: 179 SKKTG--YGR--APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ G Y R P+ +++ PTRELA Q+ ++ + + +C +YGG+P Q ++
Sbjct: 213 PESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREI 272
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G D+++ TPGR+ D +ERG I L+++K+ VLDEAD ML MGF + I VED +
Sbjct: 273 ERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHI---VEDCDM 329
Query: 295 V-----QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
QTL+FSAT P+ ++H++ FL I L S N+ VL + +
Sbjct: 330 TPVGERQTLMFSATFPADIQHLARDFLSD---YIFLSVGRVGSTSENITQKVLYVENQDK 386
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGF 405
+ D++ S+ G T+IF ETK A QL D L A A+HGD QS+RE LA F
Sbjct: 387 KSALLDLLSA-STDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAF 445
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
RSG LVAT VAARGLDI +V +I + P DV+ Y+HR GRTGRAGNTG+A ++
Sbjct: 446 RSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNS 505
Query: 466 RKSSVSK 472
S++ K
Sbjct: 506 ENSNIVK 512
>gi|317132017|ref|YP_004091331.1| DEAD/DEAH box helicase [Ethanoligenens harbinense YUAN-3]
gi|315469996|gb|ADU26600.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
YUAN-3]
Length = 530
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 153/437 (35%), Positives = 233/437 (53%), Gaps = 29/437 (6%)
Query: 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
N ++ +S + + + G E IQ ++L+G+D++G+A+TG GKTLA+ P++
Sbjct: 4 NLFAKLGLSEDVLKAIDLMGFEEPSQIQTQAIPVILEGNDVIGQAQTGTGKTLAYSAPVI 63
Query: 169 ESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYH 228
+ +GP + L+L+PTRELA QV+++ TS +YGG P
Sbjct: 64 SLMEHGPHQVQ----------ALILVPTRELAIQVNDELVRINRFTHFTSIPVYGGQPID 113
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q L+KG+D+V+ TPGRI DHI RG +D S ++F VLDE+DEML MGF++D++ +L
Sbjct: 114 RQIRALQKGVDIVVATPGRILDHIRRGTVDFSHVRFFVLDESDEMLNMGFIDDIQAVLDT 173
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348
+ + Q+LLFSAT+P ++ ++ + +K D K I ++ + A T
Sbjct: 174 L--PAERQSLLFSATMPMQIRKLAQQHMKPDVKNI-VIAKSTLTA-TLTEQFYFEVKHRD 229
Query: 349 RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAG 404
R + + I+ IIF TK +L + + +HGD+ Q+QR+ TL
Sbjct: 230 RFETLCRILDV-DEPESAIIFCRTKRGVDELVENMQSRGYIVEGMHGDMGQNQRQNTLKK 288
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
FR G LVAT+VAARG+DI ++ +I E P D E+Y+HR GRTGRA TG+A L
Sbjct: 289 FRDGNLDFLVATDVAARGIDIENISHVINYELPEDAESYVHRIGRTGRANRTGIAYSLVT 348
Query: 465 PRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSV----IPAFKSAA 519
PR+ + K IER V HI + + V+ +T+V + + FK A
Sbjct: 349 PREYIILKQIER---VTHGHIKRKEIPTVEDIYEVKYKNVLTKVKEELEKNDFEKFKPLA 405
Query: 520 EELLNNSGL--SAAELL 534
EL + L AA LL
Sbjct: 406 SELDDEYNLVDVAAALL 422
>gi|254821954|ref|ZP_05226955.1| RhlE [Mycobacterium intracellulare ATCC 13950]
Length = 452
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 145/351 (41%), Positives = 205/351 (58%), Gaps = 18/351 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L KGIES F IQ +T + L G DL+G+ARTG GKT AF +P+L+ +T+G T A G
Sbjct: 25 LAEKGIESPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQRITSG-TAARPLNG 83
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG------LTSCCLYGGAPYHAQEFKLKKG 237
P L+++PTREL QV +D + + L+ +YGG PY AQ L+ G
Sbjct: 84 ---TPRALIVVPTRELCLQVTDDLALAAKHLTADEGRRLSVVPIYGGRPYEAQIEALRAG 140
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
DVV+GTPGR+ D ++G++ L L VLDEADEML +GF+ D+E IL ++ Q+
Sbjct: 141 ADVVVGTPGRLLDLSQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIP--VDRQS 198
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
+LFSAT+P + ++ F+ + T V++ + + +++ I+
Sbjct: 199 MLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQY-AYRAHALDKVELVSRIL 257
Query: 358 RCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTL 413
+ G T+IFT TK +A ++AD L A+HGD+ Q RE L FR+G L
Sbjct: 258 QAEGRGA-TMIFTRTKRTAQKVADELAERGFAVGAVHGDLGQVAREKALKAFRTGDIDVL 316
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
VAT+VAARG+DI+DV +I + P D +AY+HR GRTGRAG TGVAV L D
Sbjct: 317 VATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKTGVAVTLVD 367
>gi|349581361|dbj|GAA26519.1| K7_Ded1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 604
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 143/353 (40%), Positives = 206/353 (58%), Gaps = 21/353 (5%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKASKKTG--YGR--AP 188
P+Q + +V +G DL+ A+TG GKT F+ P+L ES GP+ + G Y R P
Sbjct: 167 PVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYP 226
Query: 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI 248
+ +++ PTRELA Q+ ++ + + +C +YGG+P Q ++++G D+++ TPGR+
Sbjct: 227 TAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRL 286
Query: 249 KDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV-----QTLLFSAT 303
D +ERG I L+++K+ VLDEAD ML MGF + I VED + QTL+FSAT
Sbjct: 287 NDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHI---VEDCDMTPIGERQTLMFSAT 343
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
P+ ++H++ FL I L S N+ VL + + + D++ S+
Sbjct: 344 FPADIQHLARDFLSD---YIFLSVGRVGSTSENITQKVLYVENQDKKSALLDLLSA-STD 399
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
G T+IF ETK A QL D L A A+HGD QS+RE LA FRSG LVAT VA
Sbjct: 400 GLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVA 459
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
ARGLDI +V +I + P DV+ Y+HR GRTGRAGNTG+A ++ S++ K
Sbjct: 460 ARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVK 512
>gi|323346404|gb|EGA80692.1| Ded1p [Saccharomyces cerevisiae Lalvin QA23]
gi|365762883|gb|EHN04415.1| Ded1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 608
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 143/353 (40%), Positives = 206/353 (58%), Gaps = 21/353 (5%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKASKKTG--YGR--AP 188
P+Q + +V +G DL+ A+TG GKT F+ P+L ES GP+ + G Y R P
Sbjct: 171 PVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYP 230
Query: 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI 248
+ +++ PTRELA Q+ ++ + + +C +YGG+P Q ++++G D+++ TPGR+
Sbjct: 231 TAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRL 290
Query: 249 KDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV-----QTLLFSAT 303
D +ERG I L+++K+ VLDEAD ML MGF + I VED + QTL+FSAT
Sbjct: 291 NDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHI---VEDCDMTPVGERQTLMFSAT 347
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
P+ ++H++ FL I L S N+ VL + + + D++ S+
Sbjct: 348 FPADIQHLARDFLSD---YIFLSVGRVGSTSENITQKVLYVENQDKKSALLDLLSA-STD 403
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
G T+IF ETK A QL D L A A+HGD QS+RE LA FRSG LVAT VA
Sbjct: 404 GLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVA 463
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
ARGLDI +V +I + P DV+ Y+HR GRTGRAGNTG+A ++ S++ K
Sbjct: 464 ARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVK 516
>gi|392296531|gb|EIW07633.1| Ded1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 631
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 143/353 (40%), Positives = 206/353 (58%), Gaps = 21/353 (5%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKASKKTG--YGR--AP 188
P+Q + +V +G DL+ A+TG GKT F+ P+L ES GP+ + G Y R P
Sbjct: 194 PVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYP 253
Query: 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI 248
+ +++ PTRELA Q+ ++ + + +C +YGG+P Q ++++G D+++ TPGR+
Sbjct: 254 TAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRL 313
Query: 249 KDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV-----QTLLFSAT 303
D +ERG I L+++K+ VLDEAD ML MGF + I VED + QTL+FSAT
Sbjct: 314 NDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHI---VEDCDMTPVGERQTLMFSAT 370
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
P+ ++H++ FL I L S N+ VL + + + D++ S+
Sbjct: 371 FPADIQHLARDFLSD---YIFLSVGRVGSTSENITQKVLYVENQDKKSALLDLLSA-STD 426
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
G T+IF ETK A QL D L A A+HGD QS+RE LA FRSG LVAT VA
Sbjct: 427 GLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVA 486
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
ARGLDI +V +I + P DV+ Y+HR GRTGRAGNTG+A ++ S++ K
Sbjct: 487 ARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVK 539
>gi|397905196|ref|ZP_10506067.1| Cold-shock DEAD-box protein A [Caloramator australicus RC3]
gi|397161845|emb|CCJ33401.1| Cold-shock DEAD-box protein A [Caloramator australicus RC3]
Length = 526
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 156/426 (36%), Positives = 237/426 (55%), Gaps = 29/426 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E PIQA T ++L G D++G+A+TG GKT AF +P LE + SKKT
Sbjct: 23 GYEEATPIQAKTIPIILQGKDIIGQAQTGTGKTAAFGIPTLERID-----PSKKT----- 72
Query: 188 PSVLVLLPTRELAKQVHEDF---DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGT 244
L+L PTRELA QV E+ Y A+G+ +YGG Q LKKG++++IGT
Sbjct: 73 IQALILCPTRELAIQVSEELKKLSKYKKAIGI--LPIYGGQSIERQIQSLKKGVNIIIGT 130
Query: 245 PGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304
PGR DHIERG + L +K +LDEADEML MGF+ED+E IL K QTLLFSAT+
Sbjct: 131 PGRCIDHIERGTLKLEDIKLFILDEADEMLNMGFIEDIEFILDKTPKDK--QTLLFSATM 188
Query: 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
P + ++ K+LK+ + I +V E + T + I + + +++ ++ Y+
Sbjct: 189 PDPILKLTKKYLKNPEH-IKVVHKE-LTVPT-IEQIYFEVKEAHKIEILSRLLDIYNPK- 244
Query: 365 RTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
++F TK+ ++ L A ALHGD++Q+QR+ +A FRSG LVAT+VAA
Sbjct: 245 LALVFCNTKKKVDEVVSSLQARGYLADALHGDMKQNQRDRVMAKFRSGTIDVLVATDVAA 304
Query: 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK-SSVSKIERESGV 479
RG+D+ DV+++ + P+D E Y+HR GRTGRAG G A + + I+R +
Sbjct: 305 RGIDVEDVEIVFNYDVPQDEEYYVHRIGRTGRAGREGKAFTFVSGKDIYKLRDIQRYTKT 364
Query: 480 KFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKSAAEELLNNSGLSAAELLAKAL 538
K + P D+ ++ + + I + +++ + + E ++++ S +A AL
Sbjct: 365 KIKLQKIPTLHDVEESRTSKIIDRIKESINEGNLEKYSDIIERIIDDEYTSLD--VAAAL 422
Query: 539 AKAVVS 544
K V+S
Sbjct: 423 LKIVMS 428
>gi|227541917|ref|ZP_03971966.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
51866]
gi|227182360|gb|EEI63332.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
51866]
Length = 455
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 145/353 (41%), Positives = 208/353 (58%), Gaps = 18/353 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+ + L ++ I F IQA+T + L+G DL+G+ARTG GKTL F +P+L+ + + A
Sbjct: 19 ITDALATQSIVDTFAIQALTLPIALEGRDLIGQARTGMGKTLGFGVPVLDRIFD---DAD 75
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
+ G P L+++PTREL QV ED + + +YGG PY QE LK G D
Sbjct: 76 IEELDG-TPRALIVVPTRELCVQVGEDLTRAAVNLPVRVTTIYGGTPYEEQEKALKDGTD 134
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
+V+GTPGR+ D RG + L +++ VLDEADEML +GF+ +E I+ + + QT+L
Sbjct: 135 LVVGTPGRLIDLYNRGELRLDTVRILVLDEADEMLDLGFLPAIEKIIAGITAEH--QTML 192
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVLPCSSSARSQVIPDII 357
FSAT+P + ++ F+ K + + +A TN + +V + VI ++
Sbjct: 193 FSATMPDAILGLARGFMN---KPVHIRAEMSGEAETNATTKQVVFKSHRMDKVAVISRVL 249
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQREVTLAGFRSGKFMTL 413
+ G RTIIF TK SA+++A L GA ++HGD+ QS RE +L GFR G L
Sbjct: 250 QARGRG-RTIIFVRTKRSAAEVARDLAGAGFQVASVHGDMSQSARERSLQGFRDGVVDIL 308
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML--YD 464
VAT+VAARG+DI+DV +I + P D Y+HR GRTGRAG+TG AV L YD
Sbjct: 309 VATDVAARGIDIDDVTHVINYQTPDDELTYVHRIGRTGRAGHTGTAVTLVGYD 361
>gi|403727443|ref|ZP_10947652.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia rhizosphera NBRC
16068]
gi|403203921|dbj|GAB91983.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia rhizosphera NBRC
16068]
Length = 592
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 149/393 (37%), Positives = 218/393 (55%), Gaps = 22/393 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+R+ + G E+ PIQA T +L G D+VG A+TG GKT AF +PIL L
Sbjct: 28 VRQAIADVGYETPSPIQAATIPPLLAGRDVVGLAQTGTGKTAAFAIPILSRLDISQ---- 83
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGI 238
R P LVL PTRELA QV E F Y + + +YGG Y Q L++G
Sbjct: 84 ------RHPQALVLAPTRELALQVAEAFGRYSSHMPEVRVLPIYGGQSYGVQLAGLRRGA 137
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
V++GTPGR+ DH++RG +D+S L + VLDEADEML MGF EDVE IL + D +V
Sbjct: 138 QVIVGTPGRVIDHLDRGTLDISDLSYLVLDEADEMLTMGFAEDVERILAETPDDKQVA-- 195
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+PS ++ ++ ++L D + I + K + N+ L S + + +
Sbjct: 196 LFSATMPSAIRRLAQRYLH-DPQEITV--KSKTATAQNITQRYLQVSHQRKLDALTRFLE 252
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ I+F TK +LA+ L A A++GD+ Q+QRE T+ +S + LV
Sbjct: 253 VETFDA-MIVFVRTKSGTEELAERLRSRGFSAVAINGDMAQAQRERTINQLKSSQIDILV 311
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-I 473
AT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + + I
Sbjct: 312 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALLFVSPRERHLLRAI 371
Query: 474 ERESGVKFEHISAPQPADIAKAAGVEAAETITQ 506
ER + I P D+ + A++IT+
Sbjct: 372 ERATRSTLTEIGLPSVEDVNAQRVAKFADSITE 404
>gi|410623815|ref|ZP_11334625.1| ATP-dependent RNA helicase DeaD [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410156511|dbj|GAC29999.1| ATP-dependent RNA helicase DeaD [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 581
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 155/417 (37%), Positives = 232/417 (55%), Gaps = 37/417 (8%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L + L+ G E PIQA + ++L G DL+G+A+TG GKT AF LP+L ++ P +
Sbjct: 18 LLQALEKVGYEKPSPIQAKSIPLLLAGHDLLGQAQTGTGKTAAFALPMLANI--DPDENF 75
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGI 238
+ +LVL PTRELA QV E F VY + + +YGG Y Q +LK+G+
Sbjct: 76 TQ--------LLVLAPTRELAIQVAEAFQVYASFSKKIRVLPVYGGQSYDNQIRQLKRGV 127
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
VV+GTPGRI DHI+R + L LKF VLDEADEMLRMGF++DVELIL + QT
Sbjct: 128 QVVVGTPGRIIDHIKRKTLKLDKLKFLVLDEADEMLRMGFIDDVELILSHA--PAERQTA 185
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P +K I+ ++LK+ + + + +++ ++ + + + + I+
Sbjct: 186 LFSATMPDVIKKITKRYLKNPEH---IKIESTVSSASMIKQRYCQVAGHHKLEALTRIME 242
Query: 359 CYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G IIF TK + +LAD L L+GDI Q+ RE T+ + G LV
Sbjct: 243 VEKFDG-MIIFVRTKTATVELADKLMARGYVVEPLNGDIPQNARERTVEKLKRGDIDILV 301
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKI 473
AT+V ARGLD+ V ++ + P D E+Y+HR GRTGRAG TG A++ R K + I
Sbjct: 302 ATDVVARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFISHREKRLLFAI 361
Query: 474 ERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSA 530
E+ + + E++ P +I+Q+++S + FK + E +N+ + +
Sbjct: 362 EKATKQRIENMEIP---------------SISQLNESRLERFKQSIIEAMNDESIES 403
>gi|308178316|ref|YP_003917722.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
gi|307745779|emb|CBT76751.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
Re117]
Length = 515
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 159/425 (37%), Positives = 234/425 (55%), Gaps = 29/425 (6%)
Query: 116 ISVP--LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
+ VP L + L GIES FPIQ T L G D++GR +TG GKTLAF LP++ L +
Sbjct: 8 LGVPEYLAKVLADSGIESAFPIQEATLPSTLAGGDVLGRGQTGSGKTLAFSLPLVARLAD 67
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
P + R P L++ PTRELA Q+ + + A GL + +YGG QE
Sbjct: 68 RPQRRK-----ARFPRALIMAPTRELATQIAKTVEPLAKAAGLRTTVIYGGVAQSRQEKA 122
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
+ +G D+VI PGR+ D I++ +DLS L+ VLDEAD M MGF+ V I+ ++
Sbjct: 123 MNEGADIVIACPGRLDDLIKQKIVDLSQLEISVLDEADHMADMGFLPVVRRIMDRMPTG- 181
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
+Q +LFSATL + V ++ ++L TI V K +T H+ + + +
Sbjct: 182 -IQHMLFSATLDNGVDKVAKRYL--SHPTIHSVDAPKAAVNTMEHHVFVISNDDKK---- 234
Query: 354 PDIIRCYSSG-GRTIIFTETKESASQLADLLPGARA----LHGDIQQSQREVTLAGFRSG 408
D+IR + G R I+F TK A ++A L A LHG++ Q+ R+ LA F SG
Sbjct: 235 -DLIRVLAQGTARRIMFMRTKHHAKKMALTLSKAGVPAVDLHGNLSQNARDRNLAAFASG 293
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP-RK 467
+ LVAT+VAARG+ ++ V+L++ +PP + +AY HRSGRT RAG+ G V + P ++
Sbjct: 294 EAKVLVATDVAARGVHVDGVELVVHVDPPAEHKAYTHRSGRTARAGSDGTVVTICTPDQQ 353
Query: 468 SSVSKIERESGVK--FEHISAPQPADIAKAAGVEAAETITQVS---DSVIPAFKSAAEEL 522
VS + +++G+K FE ++ P +AK G E AE + V+ + PA K A E
Sbjct: 354 GDVSTLLKQAGLKVPFEKVNLNSPV-VAKVVG-EVAELVPYVAPAQQTRNPAKKKPAGES 411
Query: 523 LNNSG 527
N G
Sbjct: 412 SNARG 416
>gi|148271949|ref|YP_001221510.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147829879|emb|CAN00803.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 403
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 145/344 (42%), Positives = 206/344 (59%), Gaps = 16/344 (4%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L+ G S FPIQA T VL G D++GR RTG GKT+AF P++E L ++K
Sbjct: 33 LEELGAASPFPIQAATIPDVLAGRDVLGRGRTGSGKTIAFGAPLVERLLENDGAKNRK-- 90
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
GR P L+L PTRELA Q+ +VGL + ++GG P Q L++G+D++I
Sbjct: 91 MGRKPRALILAPTRELAMQIDRTVQPIARSVGLFTTTIFGGVPQFKQVGALQRGVDILIA 150
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR++D I++G +DLS + VLDEAD M +GF+E V+ IL +V+ Q LLFSAT
Sbjct: 151 TPGRLEDLIDQGRLDLSEIVVTVLDEADHMCDLGFLEPVQRILRQVKKDG--QRLLFSAT 208
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
L V + +FL + ++ V E +AS+ + H VL ++ +I + SSG
Sbjct: 209 LDKGVATLVNEFLPN--PSVHEVAGED-QASSTIDHRVLLIEQRDKAAIIEQL----SSG 261
Query: 364 -GRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G+T+IF T+ A QLAD L A +LHGD+ Q++R L SGK LVAT+V
Sbjct: 262 EGKTLIFARTRAFAEQLADQLEDAGIPATSLHGDLNQARRTRNLQLLTSGKVRVLVATDV 321
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
AARG+ ++D+ L+IQ + P + ++Y+HR+GRTGRAG G V L
Sbjct: 322 AARGIHVDDIGLVIQADAPDEYKSYLHRAGRTGRAGKQGTVVTL 365
>gi|422019162|ref|ZP_16365712.1| ATP-dependent RNA helicase DeaD [Providencia alcalifaciens Dmel2]
gi|414103704|gb|EKT65278.1| ATP-dependent RNA helicase DeaD [Providencia alcalifaciens Dmel2]
Length = 655
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 156/417 (37%), Positives = 227/417 (54%), Gaps = 62/417 (14%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S + L G E PIQ ++LDG+D++G A+TG GKT AF LP+L ++
Sbjct: 14 LSASILNALSDLGYEKPSPIQQQCIPLLLDGNDVLGMAQTGSGKTAAFSLPLLHNI---- 69
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHE---DFDVYGGAVGLTSCCLYGGAPYHAQEF 232
A K AP +LVL PTRELA QV E DF + V + LYGG Y Q
Sbjct: 70 -DADLK-----APQILVLAPTRELAVQVAEAMSDFSKHMNRVNV--VALYGGQRYDVQLR 121
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G VV+GTPGR+ DH++RG +DLS+LK VLDEADEMLRMGF+EDVE I+ ++
Sbjct: 122 ALRQGPQVVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPAE 181
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QT LFSAT+P ++ I+ +F+K K+ +++AS R
Sbjct: 182 H--QTALFSATMPEPIRRITRRFMKDPKEI-------RIQASITTR-------------- 218
Query: 353 IPDIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALH 390
PDI + Y + G R IIF TK + ++A+ L + AL+
Sbjct: 219 -PDIAQSYWTVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAETLERNGYNSAALN 277
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
GD+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRT
Sbjct: 278 GDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRT 337
Query: 451 GRAGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQ 506
GRAG G A++ + R+ + + +ER + + P +++ + AE I Q
Sbjct: 338 GRAGRAGRALLFVENRERRLLRNVERTMKLTIPEVELPDADLLSQRRQAKFAEQIQQ 394
>gi|212709939|ref|ZP_03318067.1| hypothetical protein PROVALCAL_00989 [Providencia alcalifaciens DSM
30120]
gi|212687451|gb|EEB46979.1| hypothetical protein PROVALCAL_00989 [Providencia alcalifaciens DSM
30120]
Length = 657
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 156/417 (37%), Positives = 227/417 (54%), Gaps = 62/417 (14%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S + L G E PIQ ++LDG+D++G A+TG GKT AF LP+L ++
Sbjct: 14 LSASILNALSDLGYEKPSPIQQQCIPLLLDGNDVLGMAQTGSGKTAAFSLPLLHNI---- 69
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHE---DFDVYGGAVGLTSCCLYGGAPYHAQEF 232
A K AP +LVL PTRELA QV E DF + V + LYGG Y Q
Sbjct: 70 -DADLK-----APQILVLAPTRELAVQVAEAMSDFSKHMNRVNV--VALYGGQRYDVQLR 121
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G VV+GTPGR+ DH++RG +DLS+LK VLDEADEMLRMGF+EDVE I+ ++
Sbjct: 122 ALRQGPQVVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPAE 181
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QT LFSAT+P ++ I+ +F+K K+ +++AS R
Sbjct: 182 H--QTALFSATMPEPIRRITRRFMKDPKEI-------RIQASITTR-------------- 218
Query: 353 IPDIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALH 390
PDI + Y + G R IIF TK + ++A+ L + AL+
Sbjct: 219 -PDIAQSYWTVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAETLERNGYNSAALN 277
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
GD+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRT
Sbjct: 278 GDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRT 337
Query: 451 GRAGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQ 506
GRAG G A++ + R+ + + +ER + + P +++ + AE I Q
Sbjct: 338 GRAGRAGRALLFVENRERRLLRNVERTMKLTIPEVELPDADLLSQRRQAKFAEQIQQ 394
>gi|358451408|ref|ZP_09161842.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
manganoxydans MnI7-9]
gi|357224641|gb|EHJ03172.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
manganoxydans MnI7-9]
Length = 506
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 146/380 (38%), Positives = 208/380 (54%), Gaps = 24/380 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E + + G E+ PIQA + +L G+ L+G A+TG GKT AF LP+L + T
Sbjct: 17 EAVSAVGYETPSPIQAQSIPALLAGNHLLGVAQTGTGKTAAFALPLLSRIDASVTD---- 72
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDV 240
P +LVL PTRELA QV E F Y +YGG ++ Q L++G V
Sbjct: 73 ------PQILVLAPTRELAIQVAEAFTTYASKFRNFHVLPIYGGQDFYPQIKGLRRGAQV 126
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
++GTPGR+ DH+ +G + L SLK VLDEADEMLRMGF++DVE IL K + Q LF
Sbjct: 127 IVGTPGRMLDHLRKGTLKLDSLKALVLDEADEMLRMGFIDDVEAILAKTPE--NCQRALF 184
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P +K ++ +L++ ++ + + + VLP + + + I+
Sbjct: 185 SATMPPQIKKVAQTYLRN---ATEVRIESETRTVERISQFVLPVYAERKLDALTRILEVE 241
Query: 361 SSGGRTIIFTETKESASQLADLLPGARA-----LHGDIQQSQREVTLAGFRSGKFMTLVA 415
IIF TK + LA+ L AR L GD+ Q QRE T+ + GK ++A
Sbjct: 242 PIDA-AIIFVRTKAETTMLAEKL-SARGHAVAPLSGDLNQRQREQTVEDLKRGKKDIIIA 299
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIE 474
T+VAARGLD++ + +I + P D EAYIHR GRTGRAG G A++L PR +S + +E
Sbjct: 300 TDVAARGLDVSRITHVINYDVPYDTEAYIHRVGRTGRAGREGKAILLVTPRERSWLRTLE 359
Query: 475 RESGVKFEHISAPQPADIAK 494
R + E P P ++ K
Sbjct: 360 RATNSPMEAYELPSPVELKK 379
>gi|229493790|ref|ZP_04387568.1| cold-shock DEAD box protein A [Rhodococcus erythropolis SK121]
gi|453073421|ref|ZP_21976361.1| ATP-dependent RNA helicase DeaD [Rhodococcus qingshengii BKS 20-40]
gi|226186698|dbj|BAH34802.1| probable ATP-dependent RNA helicase DeaD [Rhodococcus erythropolis
PR4]
gi|229319289|gb|EEN85132.1| cold-shock DEAD box protein A [Rhodococcus erythropolis SK121]
gi|452756185|gb|EME14602.1| ATP-dependent RNA helicase DeaD [Rhodococcus qingshengii BKS 20-40]
Length = 591
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 148/389 (38%), Positives = 220/389 (56%), Gaps = 22/389 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G ES PIQA T +L+G D+VG A+TG GKT AF +P+L + + K+T
Sbjct: 26 LSDVGYESPSPIQAATIPPLLEGKDVVGLAQTGTGKTAAFAVPVLSRIDT----SIKQT- 80
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
LVL PTRELA QV E F Y + GL +YGG Y Q L++G VV+
Sbjct: 81 -----QALVLAPTRELALQVAEAFGKYSAHIPGLNVLPIYGGQSYGVQLSGLRRGAHVVV 135
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+E+G +DL++LK+ VLDEADEML+MGF EDVE IL + Q LFSA
Sbjct: 136 GTPGRVIDHLEKGTLDLTNLKYLVLDEADEMLKMGFQEDVERILR--DTPGDKQVALFSA 193
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P ++ IS ++L + +++ K ++N+ + + + + ++ +
Sbjct: 194 TMPGSIRRISKQYLNN---PVEITVKSKTSTASNITQRYIQVAHQRKLDALTRVLEVEAF 250
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
IIF TK++ LA+ L A A++GDI Q+QRE T+ ++G LVAT+V
Sbjct: 251 EA-MIIFVRTKQATEDLAEKLRARGHSAAAINGDIVQAQRERTIGQLKNGALDILVATDV 309
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERES 477
AARGLD++ + ++ + P D E+Y+HR GRTGRAG G A++ PR+ + K IE+ +
Sbjct: 310 AARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRQGDALLFVAPRERHLLKSIEKAT 369
Query: 478 GVKFEHISAPQPADIAKAAGVEAAETITQ 506
+ P D+ + ++IT+
Sbjct: 370 RQPLAEMQLPSVDDVNAQRVAKFGDSITE 398
>gi|383825179|ref|ZP_09980330.1| putative ATP-dependent RNA helicase [Mycobacterium xenopi
RIVM700367]
gi|383335581|gb|EID14011.1| putative ATP-dependent RNA helicase [Mycobacterium xenopi
RIVM700367]
Length = 455
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 204/354 (57%), Gaps = 27/354 (7%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
+ +GIE F IQ +T + L G D++G+ARTG GKTLAF +P+L+ +T + G
Sbjct: 1 MTDQGIERPFAIQELTLPLALAGEDVIGQARTGMGKTLAFGVPLLQRITT-------EAG 53
Query: 184 YGRAPSVLVLLPTRELAKQVHED------FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKG 237
P LV++PTREL QV +D + + GL+ +YGG PY Q L+ G
Sbjct: 54 LSGNPRALVVVPTRELCLQVSDDLAAAAKYLIADHGRGLSVVSIYGGRPYEPQIQALRAG 113
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
DVV+GTPGR+ D ++G++ L L VLDEADEML +GF+ DVE IL ++ D Q+
Sbjct: 114 ADVVVGTPGRLLDLAQQGHLQLGKLSVLVLDEADEMLDLGFLPDVERILRQIPDDR--QS 171
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST---NVRHIVLPCSSSARSQVIP 354
+LFSAT+P+ + ++ F+ + E AS V + + +++
Sbjct: 172 MLFSATMPNPIIRLARTFMHQPTH----IRAEAPHASAVHDATDQFVYRAHALDKVELVS 227
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKF 410
+++ G T+IFT TK +A ++AD L G A+HGD+ Q RE L FRSG
Sbjct: 228 RVLQARDRGA-TMIFTRTKRTAQKVADELAGRGFAVGAVHGDLGQVAREKALKAFRSGAI 286
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
LVAT+VAARG+DI+DV +I + P D + Y+HR GRTGRAG TGVAV L D
Sbjct: 287 DVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGVAVTLVD 340
>gi|269798436|ref|YP_003312336.1| DEAD/DEAH box helicase [Veillonella parvula DSM 2008]
gi|416998583|ref|ZP_11939344.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella parvula
ACS-068-V-Sch12]
gi|269095065|gb|ACZ25056.1| DEAD/DEAH box helicase domain protein [Veillonella parvula DSM
2008]
gi|333977481|gb|EGL78339.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella parvula
ACS-068-V-Sch12]
Length = 515
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 155/429 (36%), Positives = 231/429 (53%), Gaps = 39/429 (9%)
Query: 113 RFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT 172
+ IS P+ L G E PIQ + + G D++G+A+TG GKT AF LP+LE +
Sbjct: 7 QLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVD 66
Query: 173 NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF 232
G R V++L PTRELA QV E+ + +T+ +YGG + Q
Sbjct: 67 ----------GNERHVQVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFR 116
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
LKK +++ TPGR+ DH++RG+I +K VLDEADEML MGFV+D+ ILG + +
Sbjct: 117 ALKKNPQIIVATPGRLMDHMDRGSIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPED 176
Query: 293 NKVQTLLFSATLPSWVKHISTKFL--------KSDKKTIDLVGNEKMKASTNVRHIVLPC 344
+ QTLLFSAT+P ++ ++ +L K + T+DL+ ++ + VL C
Sbjct: 177 H--QTLLFSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVL-C 233
Query: 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREV 400
+ DI + IIFT TK ++ + L A +HGD+ Q +R+
Sbjct: 234 R-------LFDI----QTPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDS 282
Query: 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV 460
+ FR G LVAT+VAARGLDI+ V + + P+D E+Y HR GRTGRAG G A
Sbjct: 283 VIRQFREGTIDILVATDVAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAF 342
Query: 461 MLYDPRK-SSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSV--IPAFKS 517
PR+ + IER + K AP ++ + A E++ +++D++ + FKS
Sbjct: 343 TFVIPREMEHLHAIERLTKRKIARRRAPSLGEVLEGQQRLAIESLVEMTDNLEALAPFKS 402
Query: 518 AAEELLNNS 526
+AEELLN++
Sbjct: 403 SAEELLNDT 411
>gi|423201022|ref|ZP_17187602.1| hypothetical protein HMPREF1167_01185 [Aeromonas veronii AER39]
gi|404618005|gb|EKB14926.1| hypothetical protein HMPREF1167_01185 [Aeromonas veronii AER39]
Length = 416
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 148/354 (41%), Positives = 204/354 (57%), Gaps = 15/354 (4%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S L++ L G + PIQA ++L G DL+ A+TG GKT AFVLP+LE L P
Sbjct: 11 LSPRLQQTLIELGYAAPTPIQARAIPVILAGRDLMAGAQTGTGKTAAFVLPLLEQLLAQP 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
AS+ R LVL+PTRELA QV E YG GLTS +YGG AQ L+
Sbjct: 71 QMASQ-----RPIRALVLVPTRELAVQVAESVARYGQGTGLTSTLVYGGVSIAAQVEALQ 125
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
G+D++I TPGR+ DH+ +G + L SL+ V DEAD ML MGF+++++ +L ++ A++
Sbjct: 126 AGVDILIATPGRLLDHLRQGALSLDSLRHLVFDEADRMLDMGFMDEIKALLKQIP-ADR- 183
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QTLLFSAT + +S K L D + I++ A R V S + ++
Sbjct: 184 QTLLFSATCDDNLFTLS-KVLLHDPELIEVAPRNTTAAEVEQR--VYTVDSDRKLALVEH 240
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411
+++ +IF+ T++ A +LA L A A HGD+ QS RE L FR+G
Sbjct: 241 MLKV-KGWAPALIFSRTRQGADKLAQQLGKAGINALAFHGDLSQSAREKVLLEFRAGTLQ 299
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
LVAT+VAARGLDI D+ +I E P E Y+HR GRTGRAGN G+A+ L+ P
Sbjct: 300 ALVATDVAARGLDITDLNYVINLEFPFVAEDYVHRIGRTGRAGNKGLAITLFSP 353
>gi|302521780|ref|ZP_07274122.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces sp.
SPB78]
gi|302430675|gb|EFL02491.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces sp.
SPB78]
Length = 485
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 144/362 (39%), Positives = 208/362 (57%), Gaps = 14/362 (3%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT-NGPTKASK 180
E L++ GI S FPIQ++T + L GSD++G+A+TG GKTL F LP+LE +T + +A +
Sbjct: 22 EALEAVGIVSPFPIQSLTLPVALSGSDVIGQAKTGTGKTLGFGLPLLERVTVSADVEAGR 81
Query: 181 KTG--YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
T AP LV++PTREL QV D G + +YGG Y Q LKKG+
Sbjct: 82 ATPDKLSEAPQALVVVPTRELCTQVTNDLQTAGKVRDVRVLAIYGGRAYEPQVEALKKGV 141
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
DVV+GTPGR+ D + +DLS ++ VLDEADEML +GF+ DVE I+ + K QT+
Sbjct: 142 DVVVGTPGRLLDLAGQRKLDLSKVRALVLDEADEMLDLGFLPDVEKIVAML--PVKRQTM 199
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P V ++ +++ +++ N V S + +++ I++
Sbjct: 200 LFSATMPGAVVALARRYMSQPTHINATSPDDENATVANTEQHVFRAHSMDKPEMVARILQ 259
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G +IF TK +A+ +++ L A A+HGD+ Q RE L FR+GK LV
Sbjct: 260 AEGR-GLVMIFCRTKRTAADISEQLQRRGFAAGAVHGDLGQGAREQALRAFRNGKVDVLV 318
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PRKSSV 470
T+VAARG+D+ V +I + P D + Y+HR GRTGRAG +G AV L D PR +
Sbjct: 319 CTDVAARGIDVEGVTHVINYQTPEDEKTYLHRIGRTGRAGRSGTAVTLVDWDDIPRWQLI 378
Query: 471 SK 472
+K
Sbjct: 379 NK 380
>gi|417748952|ref|ZP_12397364.1| DNA/RNA helicase, superfamily II [Mycobacterium avium subsp.
paratuberculosis S397]
gi|336459520|gb|EGO38457.1| DNA/RNA helicase, superfamily II [Mycobacterium avium subsp.
paratuberculosis S397]
Length = 505
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 143/351 (40%), Positives = 204/351 (58%), Gaps = 18/351 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L KGI+ F IQ +T + L G DL+G+ARTG GKT AF +P+L+ +T G T G
Sbjct: 25 LDEKGIQHPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQRITAG-TAPRALNG 83
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYG------GAVGLTSCCLYGGAPYHAQEFKLKKG 237
RA LV++PTREL QV +D + G L+ +YGG PY Q L+ G
Sbjct: 84 TPRA---LVVVPTRELCLQVTDDLTLAAKHLTADGGRPLSVVPIYGGRPYEPQIDALRAG 140
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
DVV+GTPGR+ D ++G++ L L VLDEADEML +GF+ D+E IL ++ D Q+
Sbjct: 141 ADVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIPDDR--QS 198
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
+LFSAT+P + ++ F+ + T V+++ + + +++ ++
Sbjct: 199 MLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQYVYR-AHALDKVELVSRVL 257
Query: 358 RCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTL 413
+ S G T++FT TK +A ++AD L A+HGD+ Q RE L FR+G L
Sbjct: 258 QAESRGA-TMLFTRTKRTAQKVADELAERGFKVGAVHGDLGQVAREKALKAFRTGDIDVL 316
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
VAT+VAARG+DI+DV +I + P D +AY+HR GRTGRAG GVAV L D
Sbjct: 317 VATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKAGVAVTLVD 367
>gi|294794656|ref|ZP_06759792.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44]
gi|294454986|gb|EFG23359.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44]
Length = 515
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 155/429 (36%), Positives = 231/429 (53%), Gaps = 39/429 (9%)
Query: 113 RFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT 172
+ IS P+ L G E PIQ + + G D++G+A+TG GKT AF LP+LE +
Sbjct: 7 QLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVD 66
Query: 173 NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF 232
G R V++L PTRELA QV E+ + +T+ +YGG + Q
Sbjct: 67 ----------GNERHVQVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFR 116
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
LKK +++ TPGR+ DH++RG+I +K VLDEADEML MGFV+D+ ILG + +
Sbjct: 117 ALKKNPQIIVATPGRLMDHMDRGSIKFDHVKVVVLDEADEMLNMGFVDDINKILGAIPED 176
Query: 293 NKVQTLLFSATLPSWVKHISTKFL--------KSDKKTIDLVGNEKMKASTNVRHIVLPC 344
+ QTLLFSAT+P ++ ++ +L K + T+DL+ ++ + VL C
Sbjct: 177 H--QTLLFSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVL-C 233
Query: 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREV 400
+ DI + IIFT TK ++ + L A +HGD+ Q +R+
Sbjct: 234 R-------LFDI----QTPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDS 282
Query: 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV 460
+ FR G LVAT+VAARGLDI+ V + + P+D E+Y HR GRTGRAG G A
Sbjct: 283 VIRQFREGTIDILVATDVAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAF 342
Query: 461 MLYDPRK-SSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSV--IPAFKS 517
PR+ + IER + K AP ++ + A E++ +++D++ + FKS
Sbjct: 343 TFVIPREMEHLHAIERLTKRKIARRRAPSLGEVLEGQQRLAIESLVEMTDNLEALAPFKS 402
Query: 518 AAEELLNNS 526
+AEELLN++
Sbjct: 403 SAEELLNDT 411
>gi|282849975|ref|ZP_06259358.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745]
gi|294792894|ref|ZP_06758041.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27]
gi|282580412|gb|EFB85812.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745]
gi|294456793|gb|EFG25156.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27]
Length = 515
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 155/429 (36%), Positives = 231/429 (53%), Gaps = 39/429 (9%)
Query: 113 RFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT 172
+ IS P+ L G E PIQ + + G D++G+A+TG GKT AF LP+LE +
Sbjct: 7 QLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVD 66
Query: 173 NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF 232
G R V++L PTRELA QV E+ + +T+ +YGG + Q
Sbjct: 67 ----------GNERHVQVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFR 116
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
LKK +++ TPGR+ DH++RG+I +K VLDEADEML MGFV+D+ ILG + +
Sbjct: 117 ALKKNPQIIVATPGRLMDHMDRGSIKFDHVKVVVLDEADEMLNMGFVDDINKILGAIPED 176
Query: 293 NKVQTLLFSATLPSWVKHISTKFL--------KSDKKTIDLVGNEKMKASTNVRHIVLPC 344
+ QTLLFSAT+P ++ ++ +L K + T+DL+ ++ + VL C
Sbjct: 177 H--QTLLFSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVL-C 233
Query: 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREV 400
+ DI + IIFT TK ++ + L A +HGD+ Q +R+
Sbjct: 234 R-------LFDI----QTPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDS 282
Query: 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV 460
+ FR G LVAT+VAARGLDI+ V + + P+D E+Y HR GRTGRAG G A
Sbjct: 283 VIRQFREGTIDILVATDVAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAF 342
Query: 461 MLYDPRK-SSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSV--IPAFKS 517
PR+ + IER + K AP ++ + A E++ +++D++ + FKS
Sbjct: 343 TFVIPREMEHLHAIERLTKRKIARRRAPSLGEVLEGQQRLAIESLVEMTDNLEALAPFKS 402
Query: 518 AAEELLNNS 526
+AEELLN++
Sbjct: 403 SAEELLNDT 411
>gi|297192239|ref|ZP_06909637.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
25486]
gi|297151271|gb|EFH31061.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
25486]
Length = 539
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 145/365 (39%), Positives = 207/365 (56%), Gaps = 20/365 (5%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L++ GI S FPIQ MT + L GSD++G+A+TG GKTL F LP+LE +T A +
Sbjct: 36 EALEAVGILSPFPIQEMTLPVALSGSDVIGQAKTGTGKTLGFGLPLLERVT---VPADVE 92
Query: 182 TGYGR------APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
G + AP LV++PTREL QV D G + +YGG Y Q LK
Sbjct: 93 AGRAKPEQLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALK 152
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
KG+DV++GTPGR+ D + +DLS ++ VLDEADEML +GF+ DVE I+ ++ K
Sbjct: 153 KGVDVIVGTPGRLLDLAGQRKLDLSHVRALVLDEADEMLDLGFLPDVEKIIQQL--PAKR 210
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QT+LFSAT+P V ++ +++ +++ N V S + +++
Sbjct: 211 QTMLFSATMPGAVIGLARRYMSQPTHISATSPDDEGATVRNTTQRVYRAHSMDKPEMVSR 270
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411
I++ G +IF TK +A+ +AD L + A+HGD+ Q RE L FR+GK
Sbjct: 271 ILQAEGR-GLAMIFCRTKRTAADIADQLAQRGFASGAVHGDLGQGAREQALRAFRNGKVD 329
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PRK 467
LV T+VAARG+D+ V +I + P D + Y+HR GRTGRAG +G AV L D PR
Sbjct: 330 VLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGASGTAVTLVDWDDIPRW 389
Query: 468 SSVSK 472
++K
Sbjct: 390 QLINK 394
>gi|402814213|ref|ZP_10863807.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus alvei DSM
29]
gi|402508060|gb|EJW18581.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus alvei DSM
29]
Length = 487
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 153/369 (41%), Positives = 217/369 (58%), Gaps = 30/369 (8%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GI P+QA T +VL G D+V +A+TG GKTLAF+LPI++ + G T
Sbjct: 5 LNQNGIAVPTPVQAETIPVVLSGEDVVSQAQTGTGKTLAFLLPIIQRIDAGSTHVQ---- 60
Query: 184 YGRAPSVLVLLPTRELAKQVH-EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
L++ PTRELA Q+ E + G G+ +YGG Q KL+ G +VI
Sbjct: 61 ------ALIVAPTRELALQITAEAKKLIGAYEGVNVLAVYGGQDVERQMRKLQGGRQLVI 114
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+ RG I LS +K VLDEAD+ML MGF+ +VE I+ + N+ QTLLFSA
Sbjct: 115 GTPGRLLDHLRRGTISLSKVKTLVLDEADQMLHMGFLGEVEEII-RQTPTNR-QTLLFSA 172
Query: 303 TLPSWVKHISTKFLKSDKKTIDL-VGNEKMKASTNVRHIVLPCSSSARSQVIPDII---R 358
T+P+ V+ ++ +F++S ID+ V +E++ NV+ IV+ + A+ + +I R
Sbjct: 173 TMPANVRRLAERFMRS---PIDIHVQSERITVK-NVKQIVVQTTDRAKQATLCKLIDEHR 228
Query: 359 CYSSGGRTIIFTETKESAS----QLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLV 414
Y + IIF TK AS +L +L + LHGD+ QS+RE + FR+ K LV
Sbjct: 229 PYQA----IIFCRTKRRASKLNEELLELGYDSDELHGDLSQSKREQVMERFRNVKMQLLV 284
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKI 473
AT+VAARGLD+ + + + P+D ++YIHR GRTGRAG G+A+ PR + +V I
Sbjct: 285 ATDVAARGLDVEGITHVFNYDVPQDAKSYIHRIGRTGRAGAQGIAITFASPRDRMAVELI 344
Query: 474 ERESGVKFE 482
ER G K E
Sbjct: 345 ERGIGQKLE 353
>gi|323359563|ref|YP_004225959.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
StLB037]
gi|323275934|dbj|BAJ76079.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
StLB037]
Length = 482
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 142/351 (40%), Positives = 203/351 (57%), Gaps = 25/351 (7%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ L SKGI FPIQ T + L G D++G+A+TG GKT F +P+++ L P K
Sbjct: 15 DALASKGIVDAFPIQEQTIPLGLPGQDIIGQAKTGTGKTFGFGIPVVQRLGLNPEPGVK- 73
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
L+++PTRELA QV+ED D+ + +YGG Y Q +LK G +V
Sbjct: 74 --------ALIVVPTRELAVQVYEDMDMLTSNRPTSVVAIYGGKAYEGQIDQLKAGAQIV 125
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
+GTPGR+ D + +DLS+ VLDEAD+ML +GF+ D+E I KV Q LFS
Sbjct: 126 VGTPGRLIDLANQRLLDLSNATEVVLDEADKMLDLGFLADIEKIFSKVPPVRHTQ--LFS 183
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSSSARSQVIPDIIRC 359
AT+P + ++ +F+ + I + N+ + T N++H+V S + +VI R
Sbjct: 184 ATMPGPIVALARRFMSN---PIHMRANDPDEGLTQANIKHLVYRAHSLDKDEVI---ARI 237
Query: 360 YSSGGR--TIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTL 413
S GR +IFT TK +A +L D L A A+HGD+ Q RE ++A F++GK L
Sbjct: 238 LQSEGREKAVIFTRTKRAAQKLVDELGDRGFNAAAVHGDMSQEARERSMAAFKAGKKDVL 297
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
+AT+VAARG+D+NDV +I P D + Y+HR+GRTGRAG TG+AV D
Sbjct: 298 IATDVAARGIDVNDVTHVINHTIPDDEKTYLHRAGRTGRAGKTGIAVTFVD 348
>gi|227486921|ref|ZP_03917237.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
51867]
gi|227092995|gb|EEI28307.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
51867]
Length = 455
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 145/353 (41%), Positives = 208/353 (58%), Gaps = 18/353 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+ + L ++ I F IQA+T + L+G DL+G+ARTG GKTL F +P+L+ + + A
Sbjct: 19 ITDALAAQSIVDTFAIQALTLPIALEGRDLIGQARTGMGKTLGFGVPVLDRIFD---DAD 75
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
+ G P L+++PTREL QV ED + + +YGG PY QE LK G D
Sbjct: 76 IEELDG-TPRALIVVPTRELCVQVGEDLTRAAVNLPVRVTTIYGGTPYEEQEKALKDGTD 134
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
+V+GTPGR+ D RG + L +++ VLDEADEML +GF+ +E I+ + + QT+L
Sbjct: 135 LVVGTPGRLIDLYNRGELRLGTVRILVLDEADEMLDLGFLPAIEKIIAGITAEH--QTML 192
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVLPCSSSARSQVIPDII 357
FSAT+P + ++ F+ K + + +A TN + +V + VI ++
Sbjct: 193 FSATMPDAILGLARGFMN---KPVHIRAEMSGEAETNATTKQVVFKSHRMDKVAVISRVL 249
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQREVTLAGFRSGKFMTL 413
+ G RTIIF TK SA+++A L GA ++HGD+ QS RE +L GFR G L
Sbjct: 250 QARGRG-RTIIFVRTKRSAAEVARDLAGAGFQVASVHGDMSQSARERSLQGFRDGVVDIL 308
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML--YD 464
VAT+VAARG+DI+DV +I + P D Y+HR GRTGRAG+TG AV L YD
Sbjct: 309 VATDVAARGIDIDDVTHVINYQTPDDELTYVHRIGRTGRAGHTGTAVTLVGYD 361
>gi|88856781|ref|ZP_01131435.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
gi|88813949|gb|EAR23817.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
Length = 499
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 139/359 (38%), Positives = 205/359 (57%), Gaps = 21/359 (5%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S I + + L +KGI FPIQ T M L G D++G+A+TG GKTL F LP+L+SL
Sbjct: 4 SELNIDQDMVDALATKGILEPFPIQTQTIPMGLAGQDIIGQAKTGTGKTLGFGLPVLQSL 63
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
P K L+++PTREL QV ED + +YGG Y Q
Sbjct: 64 GINPEPGVK---------ALIVVPTRELCVQVAEDLVLAASNRSTKIAAIYGGKAYEGQV 114
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
++K G V++GTPGR+ D + + L +K VLDEAD+ML +GF+ D+E + +
Sbjct: 115 EQIKDGAQVIVGTPGRLLDLASQRMLSLKDIKVMVLDEADKMLDLGFLADIEKLFAQTPP 174
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSSSAR 349
T+LFSAT+P + ++ +F+ K I + + + T N++H+V + +
Sbjct: 175 TR--HTMLFSATMPGPIVALARRFMN---KPIHIRATDPDEGLTQKNIKHVVYRAHNLDK 229
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGF 405
+VI I++ G +T++FT TK +A++L + L A A+HGD+ Q QRE +A F
Sbjct: 230 DEVIARILQSEGRG-KTVVFTRTKRAAAKLVEELNDRGFNAAAVHGDLNQEQRERAMAAF 288
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
++GK L+AT+VAARG+D+NDV +I P D + Y+HR+GRTGRAG TGVAV D
Sbjct: 289 KAGKKDILIATDVAARGIDVNDVTHVINHTIPDDHDTYLHRAGRTGRAGKTGVAVTFVD 347
>gi|387824224|ref|YP_005823695.1| cold-shock DEAD-box protein A [Francisella cf. novicida 3523]
gi|328675823|gb|AEB28498.1| Cold-shock DEAD-box protein A [Francisella cf. novicida 3523]
Length = 570
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 145/399 (36%), Positives = 223/399 (55%), Gaps = 22/399 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
+SE S+ +S + + + + G E+ PIQ +L G D++G+A+TG GKT AF
Sbjct: 2 DSETKKDFSQLGLSQDIVDTVINLGYETPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAF 61
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP++ ++ ++P VLVL PTRELA QV E F + + L C+Y
Sbjct: 62 ALPLINNI--------DLRSRDKSPQVLVLAPTRELAIQVAEQFQAFAKNIPNLDVACIY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG Y +Q LK+G+ VV+GT GR+ DHIE+G + L +L+ VLDEADEMLRMGF++DV
Sbjct: 114 GGQEYGSQIRALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
+L + + + Q LLFSAT+P+ + I ++L++ K + K K + V +
Sbjct: 174 RFVLSHISE--QCQRLLFSATIPTDIADIIEEYLRNPCK---IQVKAKTKTANTVTQKFI 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQR 398
+ + ++ + G IIF +TK S ++AD L A++GD+QQSQR
Sbjct: 229 VIKGFRKIDALDRLLEIEETDG-VIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E + FR+ K LVAT+V ARG+D+ + +I + P D + Y+HR GRTGRAG G
Sbjct: 288 EYIVDQFRNAKSDILVATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGT 347
Query: 459 AVMLYDPRKSS--VSKIERESGVKFEHISAPQPADIAKA 495
++ L P K + +ER +G + + P D+A++
Sbjct: 348 SISLV-PLKEMRFLRTLERFTGSPMQEVFMPSAKDLAQS 385
>gi|300783470|ref|YP_003763761.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
gi|384146701|ref|YP_005529517.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei S699]
gi|399535355|ref|YP_006548017.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei S699]
gi|299792984|gb|ADJ43359.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
gi|340524855|gb|AEK40060.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei S699]
gi|398316125|gb|AFO75072.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei S699]
Length = 500
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 140/371 (37%), Positives = 216/371 (58%), Gaps = 20/371 (5%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ PL L ++G+ FPIQA T L G D++GR RTG GKT FVLP+L L GP
Sbjct: 9 LPTPLVAALATQGVTEPFPIQAATLPHTLAGRDVLGRGRTGSGKTYGFVLPLLARLAAGP 68
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
T+ +K G RA L+L PTRELA Q+ +GL + ++GG + Q +L+
Sbjct: 69 TR--RKPGRPRA---LILAPTRELATQIEASILPLAKPLGLKTTTIFGGVSANPQITRLR 123
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
G+D+V+ PGR+ DH+ G++ L +++ VLDEAD M +GF+ +V I+ + ++
Sbjct: 124 DGVDIVVACPGRLADHMRSGHVKLDAIEITVLDEADHMADLGFLPEVRRIMDQTP--SRG 181
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
Q +LFSATL + V + +F+ +D T + + + + H VL + R +P
Sbjct: 182 QRMLFSATLDNGVDVLVKRFM-NDPITHSV--DSAQSPVSTMEHHVLHLEETHR---LPV 235
Query: 356 IIRCYSSGGRTIIFTETKESASQL-----ADLLPGARALHGDIQQSQREVTLAGFRSGKF 410
++ ++ GRT++FT TK A L A +P A LHG++ Q+ R L F SG
Sbjct: 236 LVDLTAAPGRTLVFTRTKSRAKALTRKLVASGVP-AVELHGNLGQNARTRNLEAFSSGTA 294
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG-VAVMLYDPRKSS 469
TLVAT++AARG+ ++DV+L+I +PP + +AY+HRSGRT RAG +G V ++ D +
Sbjct: 295 KTLVATDIAARGIHVDDVRLVIHADPPVEHKAYLHRSGRTARAGASGTVVTLMTDAQVRD 354
Query: 470 VSKIERESGVK 480
V + R++G+K
Sbjct: 355 VRDLTRKAGIK 365
>gi|126665223|ref|ZP_01736206.1| ATP-dependent RNA helicase DeaD [Marinobacter sp. ELB17]
gi|126630593|gb|EBA01208.1| ATP-dependent RNA helicase DeaD [Marinobacter sp. ELB17]
Length = 504
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 149/379 (39%), Positives = 206/379 (54%), Gaps = 22/379 (5%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E + + G E+ PIQA + +L G L+G A+TG GKT AF LP+L S+
Sbjct: 17 EAVTAVGYETPTPIQAQSIPALLSGRHLLGVAQTGTGKTAAFALPLL----------SRV 66
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDV 240
AP +LVL PTRELA QV E F Y + +YGG + Q L++G V
Sbjct: 67 DPNVNAPQILVLAPTRELAIQVAEAFSTYASKLPNFHVLPIYGGQDFFPQIKGLRRGAHV 126
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
++GTPGR+ DH+ +G + L +LK VLDEADEMLRMGF++DVE IL K D Q LF
Sbjct: 127 IVGTPGRMLDHLRKGTLKLDNLKALVLDEADEMLRMGFIDDVEAILSKTPD--NCQRALF 184
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P +K ++ +LK +++ + + VLP + + + I+
Sbjct: 185 SATMPPQIKKVAQTYLKD---AVEVRIESASRTVDAISQYVLPVYAERKLDALTRILEVE 241
Query: 361 SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
+IIF TK LA+ L A L+GD+ Q QRE T+ + GK +VAT
Sbjct: 242 PFDA-SIIFVRTKAETIVLAEKLAARGHAAAPLNGDLNQRQREQTVEDLKRGKKDIVVAT 300
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIER 475
+VAARGLD+ + +I + P D EAYIHR GRTGRAG G A++L PR +S + +ER
Sbjct: 301 DVAARGLDVPRITHVINYDVPYDTEAYIHRIGRTGRAGRDGKAILLVTPRERSWLRTLER 360
Query: 476 ESGVKFEHISAPQPADIAK 494
+ E P PA + K
Sbjct: 361 ATNATMEAYELPSPAALQK 379
>gi|385330329|ref|YP_005884280.1| DEAD/DEAH box helicase [Marinobacter adhaerens HP15]
gi|311693479|gb|ADP96352.1| DEAD/DEAH box helicase domain protein [Marinobacter adhaerens HP15]
Length = 507
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 146/380 (38%), Positives = 207/380 (54%), Gaps = 24/380 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E + + G E+ PIQA +L G+ L+G A+TG GKT AF LP+L + T
Sbjct: 17 EAVSAVGYETPSPIQAQAIPALLAGNHLLGVAQTGTGKTAAFALPLLSRIDASVTD---- 72
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDV 240
P +LVL PTRELA QV E F Y +YGG ++ Q L++G V
Sbjct: 73 ------PQILVLAPTRELAIQVAEAFTTYASKFRNFHVLPIYGGQDFYPQIKGLRRGAQV 126
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
++GTPGR+ DH+ +G + L SLK VLDEADEMLRMGF++DVE IL K + Q LF
Sbjct: 127 IVGTPGRMLDHLRKGTLKLDSLKALVLDEADEMLRMGFIDDVEAILAKTPE--NCQRALF 184
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P +K ++ +L++ ++ + + + VLP + + + I+
Sbjct: 185 SATMPPQIKKVAQTYLRN---ATEVRIESETRTVERISQFVLPVYAERKLDALTRILEVE 241
Query: 361 SSGGRTIIFTETKESASQLADLLPGARA-----LHGDIQQSQREVTLAGFRSGKFMTLVA 415
IIF TK + LA+ L AR L GD+ Q QRE T+ + GK ++A
Sbjct: 242 PIDA-AIIFVRTKAETTMLAEKL-SARGHAVAPLSGDLNQRQREQTVEDLKRGKKDIIIA 299
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIE 474
T+VAARGLD++ + +I + P D EAYIHR GRTGRAG G A++L PR +S + +E
Sbjct: 300 TDVAARGLDVSRITHVINYDVPYDTEAYIHRVGRTGRAGREGKAILLVTPRERSWLRTLE 359
Query: 475 RESGVKFEHISAPQPADIAK 494
R + E P P ++ K
Sbjct: 360 RATNSPMEAYELPSPVELKK 379
>gi|383775706|ref|YP_005460272.1| putative DEAD/DEAH box helicase [Actinoplanes missouriensis 431]
gi|381368938|dbj|BAL85756.1| putative DEAD/DEAH box helicase [Actinoplanes missouriensis 431]
Length = 622
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 142/347 (40%), Positives = 200/347 (57%), Gaps = 14/347 (4%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L + GI F IQ + L G+DL+G+A TG GKTL F LP+LE +T A K
Sbjct: 35 EALSAAGITHAFAIQEYALPIALRGTDLIGQAPTGTGKTLGFGLPLLERVTAPSEGADGK 94
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
P L+++PTREL QV D G G+ +YGG Y Q LKKG++++
Sbjct: 95 ------PQALIVVPTRELGLQVARDLAAAGSTRGVRVLPIYGGVAYEPQVDALKKGVEIL 148
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
+GTPGR+ D ++ + L S++ VLDEAD ML +GF++DVE IL + D + QT+LFS
Sbjct: 149 VGTPGRLLDLAKQKQLKLGSVRALVLDEADRMLDLGFLDDVEKILAMLPD--QRQTMLFS 206
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
AT+P + +S +FL+ + TI + AS + +V + +++ I++
Sbjct: 207 ATMPDPIVALSRRFLR-NPVTIHAGHTAESAASPLTKQVVYRTHPMNKLEMVARILQARG 265
Query: 362 SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
G T+IFT TK +A ++A+ L A+HGD+ Q RE L FR+GK LVAT+
Sbjct: 266 R-GLTMIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRTGKIDVLVATD 324
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
VAARGLD++ V +I + P D E Y HR GRTGRAG TGVA+ D
Sbjct: 325 VAARGLDVSGVTHVINYDCPEDPETYTHRIGRTGRAGATGVAITFVD 371
>gi|259907048|ref|YP_002647404.1| ATP-dependent RNA helicase DeaD [Erwinia pyrifoliae Ep1/96]
gi|387869761|ref|YP_005801131.1| cold-shock DEAD box protein A [Erwinia pyrifoliae DSM 12163]
gi|224962670|emb|CAX54125.1| Cold-shock DEAD-box protein A [Erwinia pyrifoliae Ep1/96]
gi|283476844|emb|CAY72682.1| Cold-shock DEAD box protein A [Erwinia pyrifoliae DSM 12163]
Length = 638
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 148/382 (38%), Positives = 218/382 (57%), Gaps = 31/382 (8%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
++ L E L G PIQA +L G D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LNADLLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHE---DFDVYGGAVGLTSCCLYGGAPYHAQEF 232
T +AP +LVL PTRELA QV E DF + GL LYGG Y Q
Sbjct: 71 TV--------KAPQILVLAPTRELAVQVAEAVTDFSKH--MRGLNVVALYGGQRYDVQLR 120
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G VV+GTPGR+ DH++RG +DLS+L+ VLDEADEMLRMGF+EDVE I+ ++ D
Sbjct: 121 ALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDG 180
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QT LFSAT+P ++ I+ +F+K ++ ++++S R + +A +
Sbjct: 181 H--QTALFSATMPEAIRRITKRFMKDPQEV-------RIQSSLTTRPDISQSYWTAYGRK 231
Query: 353 IPDIIRCYSSG--GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFR 406
+ R + IIF TK + ++A+ L + AL+GD+ Q+ RE TL +
Sbjct: 232 TDALTRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLK 291
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG G A++ + R
Sbjct: 292 DGRLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENR 351
Query: 467 KSSVSK-IERESGVKFEHISAP 487
+ + + IER + + P
Sbjct: 352 ERRLLRNIERTMKLTIPEVELP 373
>gi|308050678|ref|YP_003914244.1| ATP-dependent RNA helicase CsdA [Ferrimonas balearica DSM 9799]
gi|307632868|gb|ADN77170.1| ATP-dependent RNA helicase CsdA [Ferrimonas balearica DSM 9799]
Length = 649
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 161/427 (37%), Positives = 226/427 (52%), Gaps = 33/427 (7%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L + G S PIQA +LDG D++G A TG GKT AF LP L + P +
Sbjct: 20 LSAMGFTSPTPIQAQAIPFMLDGHDILGEAATGTGKTAAFGLPALAGID--PRQ------ 71
Query: 184 YGRAPSVLVLLPTRELAKQVH---EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDV 240
RA +LVL PTRELA QV E+F V G+ LYGG PY Q L++G V
Sbjct: 72 --RAAQMLVLAPTRELAIQVATALEEFAV--NMKGMRVTTLYGGQPYGPQLRDLERGTQV 127
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+ TPGR+ DHI RG+I+L S++ VLDEADEML MGF+ED+E IL + D + Q LF
Sbjct: 128 VVATPGRLMDHIRRGSIELDSIQCCVLDEADEMLNMGFLEDIEWILEHLPD--QTQMALF 185
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P+ ++ I+ +FLK D K + + + KA N+ S + + +
Sbjct: 186 SATMPNQIRRIAERFLK-DPKHVKIASDRTQKA--NIVQKAWKVSGLNKLTALERLSETL 242
Query: 361 SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
I+F T+ +LA+ L A AL+GD+ Q QRE T+A GK L+AT
Sbjct: 243 DYDA-MIVFVRTRNDTMELANHLNNMGFKAAALNGDMSQQQREHTVAQLHKGKINILIAT 301
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK-SSVSKIER 475
+V ARGLD+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + ER
Sbjct: 302 DVVARGLDVPRITHVLNFDLPMDSESYVHRIGRTGRAGRSGEAILFARPRELRQLRFYER 361
Query: 476 ESGVKFEHISAPQPADIAKA----AGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAA 531
+G E + P ++ K VE AE + Q + +E+ + LS
Sbjct: 362 STGGTIEMMEMPTAEELGKHRVAKLSVELAECVAQTD---LAEMTGMLQEMAEQNELSME 418
Query: 532 ELLAKAL 538
+L A L
Sbjct: 419 QLAAALL 425
>gi|444919637|ref|ZP_21239637.1| Cold-shock DEAD-box protein A [Cystobacter fuscus DSM 2262]
gi|444708189|gb|ELW49282.1| Cold-shock DEAD-box protein A [Cystobacter fuscus DSM 2262]
Length = 553
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 155/381 (40%), Positives = 212/381 (55%), Gaps = 25/381 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L + G E PIQ ++ G DL+G A TG GKT AF LP+L+ LT G
Sbjct: 2 EALSALGYEEPTPIQRAALPPLIAGKDLLGIAATGTGKTAAFSLPLLQRLTPG------- 54
Query: 182 TGYGRAP---SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
RAP S LVL+PTRELA QV E YG +G++ LYGG P Q LK+G+
Sbjct: 55 ---QRAPFSTSALVLVPTRELAMQVAEAIHRYGQKMGVSVLPLYGGQPIGQQLRVLKRGV 111
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
DVV+ TPGR DH++R ++ L SL+ VLDEADEML MGF ED+E IL + QT
Sbjct: 112 DVVVATPGRALDHLKRQSLLLDSLRTVVLDEADEMLDMGFAEDLEAILEATP--QERQTA 169
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVLPCSSSARSQVIPDI 356
LFSATLP + I+ + L + + EK+ A T VR + ++ + +
Sbjct: 170 LFSATLPPRIASIAERHLHAPVHV--KIAKEKLPAGTGPRVRQVAYIVPRPFKAATLGRV 227
Query: 357 IRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMT 412
+ + I+F T+ +L L G A+ALHG + Q+QR+ L F+S
Sbjct: 228 LDVEAPTA-AIVFCRTRTEVDELTVSLNGRGWRAQALHGGMDQTQRDRVLKQFKSHAVEL 286
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
L+AT+VAARGLDI + ++ + P EAY+HR GRTGRAG GVA+ L +PR+ + +
Sbjct: 287 LIATDVAARGLDIEKLSHVVNYDVPNAPEAYVHRIGRTGRAGREGVAITLAEPREHRLLR 346
Query: 473 -IERESGVKFEHISAPQPADI 492
IE+ +G K E + P AD+
Sbjct: 347 NIEKLTGQKIELATVPTVADL 367
>gi|404445393|ref|ZP_11010534.1| DEAD/DEAH box helicase [Mycobacterium vaccae ATCC 25954]
gi|403652333|gb|EJZ07390.1| DEAD/DEAH box helicase [Mycobacterium vaccae ATCC 25954]
Length = 505
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 145/363 (39%), Positives = 209/363 (57%), Gaps = 23/363 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L +GIE F IQ +T + L G DL+G+ARTG GKT AF +P+L +T + TG
Sbjct: 25 LAEEGIEHAFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLHRITTDTER--PLTG 82
Query: 184 YGRAPSVLVLLPTRELAKQVHED------FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKG 237
RA L+++PTREL QV+ED + + LT +YGG PY Q L+KG
Sbjct: 83 IPRA---LIVVPTRELCIQVYEDLLGASKYLMADDTRKLTVTAIYGGRPYEPQIEALQKG 139
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
+DVV+GTPGR+ D ++G++ L L VLDEADEML +GF+ D+E IL ++ K Q
Sbjct: 140 VDVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILKQI--PAKRQA 197
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
+LFSAT+P + ++ F+ + I + + + +++ I+
Sbjct: 198 MLFSATMPDPIITLARTFM-TQPTHIRAEAPHSSATHDSTEQFAYRAHALDKVEMVARIL 256
Query: 358 RCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTL 413
+ G T+IFT TK +A ++AD L A+HGD+ Q+ RE L FR+G+ L
Sbjct: 257 QAEGRGA-TMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQAAREKALKSFRTGEVDVL 315
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PRKSS 469
VAT+VAARG+DI+D+ +I + P D +AY+HR GRTGRAG TG+AV L D PR +
Sbjct: 316 VATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGIAVTLVDWDELPRWTM 375
Query: 470 VSK 472
+ K
Sbjct: 376 IDK 378
>gi|238018738|ref|ZP_04599164.1| hypothetical protein VEIDISOL_00582 [Veillonella dispar ATCC 17748]
gi|237865209|gb|EEP66499.1| hypothetical protein VEIDISOL_00582 [Veillonella dispar ATCC 17748]
Length = 521
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 155/429 (36%), Positives = 231/429 (53%), Gaps = 39/429 (9%)
Query: 113 RFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT 172
+ IS P+ L G E PIQ + + G D++G+A+TG GKT AF LP+LE +
Sbjct: 7 QLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVD 66
Query: 173 NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF 232
G R V++L PTRELA QV E+ + +T+ +YGG + Q
Sbjct: 67 ----------GNERHVQVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFR 116
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
LKK +++ TPGR+ DH++RG+I +K VLDEADEML MGFV+D+ ILG + +
Sbjct: 117 ALKKNPQIIVATPGRLMDHMDRGSIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPED 176
Query: 293 NKVQTLLFSATLPSWVKHISTKFL--------KSDKKTIDLVGNEKMKASTNVRHIVLPC 344
+ QTLLFSAT+P ++ ++ +L K + T+DL+ ++ + VL C
Sbjct: 177 H--QTLLFSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVL-C 233
Query: 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREV 400
+ DI + IIFT TK ++ + L A +HGD+ Q +R+
Sbjct: 234 R-------LFDI----QTPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDS 282
Query: 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV 460
+ FR G LVAT+VAARGLDI+ V + + P+D E+Y HR GRTGRAG G A
Sbjct: 283 VIRQFREGTIDILVATDVAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAF 342
Query: 461 MLYDPRK-SSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSV--IPAFKS 517
PR+ + IER + K AP ++ + A E++ +++D++ + FKS
Sbjct: 343 TFVIPREMEHLHAIERLTKRKIARRRAPSLGEVLEGQQRLAIESLVEMTDNLEALAPFKS 402
Query: 518 AAEELLNNS 526
+AEELLN++
Sbjct: 403 SAEELLNDT 411
>gi|90408322|ref|ZP_01216486.1| ATP-dependent RNA helicase DeaD [Psychromonas sp. CNPT3]
gi|90310553|gb|EAS38674.1| ATP-dependent RNA helicase DeaD [Psychromonas sp. CNPT3]
Length = 579
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 159/424 (37%), Positives = 235/424 (55%), Gaps = 29/424 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA +L+G D++G A+TG GKT AF LP+L ++ +A
Sbjct: 30 GYETPSPIQAQCIPHLLNGKDVLGLAQTGTGKTAAFALPLLANIDLSL----------KA 79
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F Y + G +YGG Y+ Q +L++G VV+GTPG
Sbjct: 80 PQVLVLAPTRELAIQVAEAFQTYSRHLAGFHVMPIYGGQSYNIQFGQLRRGPQVVVGTPG 139
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
RI DH++R +DLS+L VLDEADEMLRMGF++DVE I+ + K QT LFSAT+P
Sbjct: 140 RIMDHLKRKTLDLSNLTTLVLDEADEMLRMGFIDDVETIMKDM--PAKHQTALFSATMPD 197
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTN-VRHIVLPCSSSARSQVIPDIIRCYSSG-- 363
+K I+ +++ + K+KA T+ V +I C + + R +
Sbjct: 198 QIKRITKRYMNDPIEV-------KIKAKTSTVENIEQKCWIVRGVNKLDALTRMLETEEF 250
Query: 364 GRTIIFTETKESASQLADLLP--GAR--ALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
IIF TK + +LA+ L G R AL+GD+ Q RE T+A +SG LVAT+VA
Sbjct: 251 DGVIIFARTKTATVELAERLEARGYRSAALNGDMNQQTRERTIARLKSGGLDILVATDVA 310
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESG 478
ARGLD+ + L++ + P D E+Y+HR GRTGRAG G A++ PR+ + K IER +
Sbjct: 311 ARGLDVERISLVVNYDIPTDTESYVHRIGRTGRAGRKGKAILFAAPRERRLLKAIERATR 370
Query: 479 VKFEHISAPQPADIAKAAGVEAAETITQVSDSV-IPAFKSAAEELLNNSGLSAAELLAKA 537
+ + P ++ + + + + +S + F++ ++ N+ L +L++
Sbjct: 371 QEITIMELPTRDEVTQTRIENFQKQVFDICESEDLTFFRNLYAQMEKNTELDELDLVSAL 430
Query: 538 LAKA 541
L A
Sbjct: 431 LLMA 434
>gi|260596208|ref|YP_003208779.1| ATP-dependent RNA helicase DeaD [Cronobacter turicensis z3032]
gi|260215385|emb|CBA27415.1| Cold-shock DEAD box protein A [Cronobacter turicensis z3032]
Length = 638
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 164/451 (36%), Positives = 240/451 (53%), Gaps = 62/451 (13%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L ++ +
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLHNIDDTL 72
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E D G+ LYGG Y Q L
Sbjct: 73 ----------RAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS+LK VLDEADEMLRMGF+EDVE I+ ++ +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVETIMAQIPAEH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y S G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWSVYGMRKNEALVRFLESEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVE--AAETITQVSD 509
AG G A++ + R+ + + IER + + P A++ +E AA+ Q+
Sbjct: 339 AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPN-AELLGKRRLEKFAAKVQQQLES 397
Query: 510 SVIPAFKSAAEELLNNSGLSAAELLAKALAK 540
S + +++ +L L E LA AL K
Sbjct: 398 SDLDQYRALLAKLQPEGELD-VETLAAALLK 427
>gi|389576917|ref|ZP_10166945.1| DNA/RNA helicase, superfamily II [Eubacterium cellulosolvens 6]
gi|389312402|gb|EIM57335.1| DNA/RNA helicase, superfamily II [Eubacterium cellulosolvens 6]
Length = 524
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 139/339 (41%), Positives = 198/339 (58%), Gaps = 19/339 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G PIQ T ++L+G DL+ A+TG GKT AF LPILE L NG + +
Sbjct: 20 GYTEATPIQEKTMPVILEGRDLIACAQTGTGKTAAFALPILEKLDNGEVRKLRS------ 73
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGR 247
LVL PTRELA Q+ E+F YG + L + C+YGGA Q L++G D+++ T GR
Sbjct: 74 ---LVLTPTRELAVQIFENFKKYGRYLPLRAVCIYGGAKQKPQMEALRRGCDILVATLGR 130
Query: 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSW 307
+ D++ G + L ++ VLDEAD ML MGF+ DV I G + QTL+FSAT+P
Sbjct: 131 LMDYMNLGLVSLKGIEIFVLDEADRMLDMGFINDVRKIAGSMN--TDRQTLMFSATMPKE 188
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTI 367
++ + + L+ D+ + A+ V + S + +V+ +I++ RTI
Sbjct: 189 IEQLGRELLRD---PADVRVAPQSTAADTVDQKICFVGHSDKLKVLAEILK-QEEVTRTI 244
Query: 368 IFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423
IFT TK A ++A L A+A+HGD Q QR+ TL G+++G F LVAT+VA+RGL
Sbjct: 245 IFTRTKHGADRVARNLTRSGIAAKAIHGDKTQGQRQSTLEGYKAGHFHVLVATDVASRGL 304
Query: 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
DI +V +I P++ EAYIHR GRTGRAG +G+A+ L
Sbjct: 305 DIPEVSHVINFNLPQEPEAYIHRIGRTGRAGESGIAITL 343
>gi|259149685|emb|CAY86489.1| Ded1p [Saccharomyces cerevisiae EC1118]
Length = 604
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 143/353 (40%), Positives = 206/353 (58%), Gaps = 21/353 (5%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKASKKTG--YGR--AP 188
P+Q + +V +G DL+ A+TG GKT F+ P+L ES GP+ + G Y R P
Sbjct: 167 PVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYP 226
Query: 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI 248
+ +++ PTRELA Q+ ++ + + +C +YGG+P Q ++++G D+++ TPGR+
Sbjct: 227 TAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRL 286
Query: 249 KDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV-----QTLLFSAT 303
D +ERG I L+++K+ VLDEAD ML MGF + I VED + QTL+FSAT
Sbjct: 287 NDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHI---VEDCDMTPVGERQTLMFSAT 343
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
P+ ++H++ FL I L S N+ VL + + + D++ S+
Sbjct: 344 FPADIQHLARDFLSD---YIFLSVGRVGSTSENITQKVLYVENQDKKSALLDLLSA-STD 399
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
G T+IF ETK A QL D L A A+HGD QS+RE LA FRSG LVAT VA
Sbjct: 400 GLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVA 459
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
ARGLDI +V +I + P DV+ Y+HR GRTGRAGNTG+A ++ S++ K
Sbjct: 460 ARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVK 512
>gi|206579682|ref|YP_002236428.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae 342]
gi|288933410|ref|YP_003437469.1| DEAD/DEAH box helicase [Klebsiella variicola At-22]
gi|206568740|gb|ACI10516.1| cold-shock DEAD box protein A [Klebsiella pneumoniae 342]
gi|288888139|gb|ADC56457.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22]
Length = 643
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 149/396 (37%), Positives = 217/396 (54%), Gaps = 58/396 (14%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +LDG D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 71 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAP 487
AG G A++ + R+ + + IER + + P
Sbjct: 339 AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELP 374
>gi|384440186|ref|YP_005654910.1| ATP-dependent RNA helicase [Thermus sp. CCB_US3_UF1]
gi|359291319|gb|AEV16836.1| ATP-dependent RNA helicase [Thermus sp. CCB_US3_UF1]
Length = 512
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 163/387 (42%), Positives = 229/387 (59%), Gaps = 23/387 (5%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F + ++E L +GI + PIQA + L+G DL+G+ARTG GKTLAF LPI ++L
Sbjct: 6 FPLKAEIQEALSRRGIVAPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAQAL-- 63
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
+AS + GR P +VL PTREL QV + A L +YGG Y Q +
Sbjct: 64 ---EASSER--GRPPRAIVLTPTRELCLQVASELAAV--APHLKVVAVYGGTGYGKQREE 116
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L +G DVV+ TPGR D++++G +DLS ++ VLDEADEML MGF E+VE IL
Sbjct: 117 LARGADVVVATPGRALDYLKQGVLDLSQVRIAVLDEADEMLSMGFEEEVEAILKAT--PQ 174
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
+ QTLLFSATLPSW + ++ +++++ I++V E R L + S R ++
Sbjct: 175 ERQTLLFSATLPSWARRLAERYMRA-PVVINVVREE----GVTYREEAL-LAPSERLSLL 228
Query: 354 PDIIRCYSSGGRTIIFT----ETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGK 409
D++ S R I+FT ET+E A+ L L ARA+HGD+ Q+ RE + FR G+
Sbjct: 229 SDLLYV-KSPKRAIVFTRTKAETEEVATGLLRLGHPARAIHGDLSQADRERVMRAFRDGE 287
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KS 468
LVAT+VAARGLDI +V L++ P E Y HRSGRTGRAG G V+LY R K
Sbjct: 288 VRILVATDVAARGLDIPEVDLVVHFRLPDKPETYQHRSGRTGRAGRGGEVVILYGNREKR 347
Query: 469 SVSKIERESGVKFEHISAPQPADIAKA 495
++++ER G F+ ++ P P ++ +A
Sbjct: 348 ELAELERAVGRTFKRVNPPTPEEVLEA 374
>gi|163751207|ref|ZP_02158436.1| ATP-dependent RNA helicase DeaD [Shewanella benthica KT99]
gi|161329036|gb|EDQ00109.1| ATP-dependent RNA helicase DeaD [Shewanella benthica KT99]
Length = 611
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 158/432 (36%), Positives = 234/432 (54%), Gaps = 27/432 (6%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S PL L G E PIQA + ++ G D++G+A+TG GKT AF LP+L ++
Sbjct: 13 LSEPLLRSLDELGYEKPTPIQAASIIPLMAGKDILGQAQTGTGKTGAFALPLLSNIDPAI 72
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
AP +LVL PTRELA QV E F Y V GL +YGG H Q L
Sbjct: 73 N----------APQILVLAPTRELAVQVAEAFATYAKFVKGLHVLPIYGGQSMHQQLNAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G V++GTPGR+ DH+ RG + L SLK VLDEADEML+MGF++D+E IL +
Sbjct: 123 RRGPQVIVGTPGRVMDHMRRGTLKLDSLKAMVLDEADEMLKMGFIDDIEWILEHT--PKQ 180
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
Q LFSAT+P +K ++ K+L +D + + +T R + + S + + +
Sbjct: 181 RQLALFSATMPEQIKRVANKYL-TDPIHVKIAATTATVETTEQRFVQV--SQHNKLEALV 237
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410
++ + G IIF T+ S +LA+ L + LHGD+ Q RE + + G
Sbjct: 238 RVLEVEKTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKRGSL 296
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 470
L+AT+VAARGLD+ ++ +I + P D EAYIHR GRTGRAG TG+A++ R+ +
Sbjct: 297 DILIATDVAARGLDVERIRHVINYDIPYDTEAYIHRIGRTGRAGRTGMAILFVTHREMRM 356
Query: 471 SK-IERESGVKFEHISAPQPADIAK----AAGVEAAETITQVS-DSVIPAFKSAAEELLN 524
+ IER + + + P P + + G + AE I + S D + A ++L
Sbjct: 357 LRTIERATKSRISPMDVPSPESVTERRLSRLGEQVAEIINKDSLDFMKGAVAQLCQQLEV 416
Query: 525 NSGLSAAELLAK 536
++ + AA LL +
Sbjct: 417 DTDVLAAALLQQ 428
>gi|407803800|ref|ZP_11150632.1| ATP-dependent RNA helicase [Alcanivorax sp. W11-5]
gi|407022210|gb|EKE33965.1| ATP-dependent RNA helicase [Alcanivorax sp. W11-5]
Length = 586
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 144/383 (37%), Positives = 215/383 (56%), Gaps = 21/383 (5%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S +++ +++ G ++ IQ +L+G D++G+A+TG GKT AF LP++ + P
Sbjct: 16 LSPTVKQAIRALGYQTPSAIQQAIIPHILEGRDVIGQAQTGTGKTAAFALPLISRFGDAP 75
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
A + VLVL PTRELA QV E F+ YG L L GG Y Q L
Sbjct: 76 AGAVQ---------VLVLAPTRELALQVTESFEKYGQQTPSLRVVTLCGGMDYRPQTRAL 126
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G+ VVIGTPGR+ DH++RG + L +L+ VLDEADEMLRMGF++DVE ++ + A
Sbjct: 127 REGVQVVIGTPGRVVDHLKRGTLKLDALRCLVLDEADEMLRMGFIDDVEWVMEQTPAA-- 184
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
Q L SAT+P ++ ++ +FLKS + ++ K +R L + + +
Sbjct: 185 CQVALLSATMPPPIRKLAQRFLKSPQ---EITVATKTATVAAIRQRYLFINQRDKLDALV 241
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410
++ + G I+F TKES +LAD L A AL+GD+ Q RE + + G+
Sbjct: 242 RVLETETFDG-VILFARTKESTVELADFLQRAGFRATALNGDMAQPHREQVVEQIKGGRI 300
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSS 469
LVAT+V ARGLD+ + +++ + P D E Y+HR GRTGRAG G A++ PR K
Sbjct: 301 DILVATDVVARGLDVPRISMVLNYDIPFDGETYVHRIGRTGRAGREGDAILFVTPREKRM 360
Query: 470 VSKIERESGVKFEHISAPQPADI 492
+ IER + K E ++ P A I
Sbjct: 361 LQNIERLTRQKVEEMALPTSAQI 383
>gi|340753231|ref|ZP_08690020.1| ATP-dependent RNA helicase [Fusobacterium sp. 2_1_31]
gi|422315292|ref|ZP_16396730.1| hypothetical protein FPOG_02366 [Fusobacterium periodonticum D10]
gi|229422830|gb|EEO37877.1| ATP-dependent RNA helicase [Fusobacterium sp. 2_1_31]
gi|404592614|gb|EKA94414.1| hypothetical protein FPOG_02366 [Fusobacterium periodonticum D10]
Length = 529
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 163/441 (36%), Positives = 238/441 (53%), Gaps = 28/441 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKT 182
L KG ES PIQ +T +L + D++G+A+TG GKT AF LPI+E+
Sbjct: 23 LSKKGYESPTPIQKLTIPALLKNDKDIIGQAQTGTGKTAAFSLPIIENFETS-------- 74
Query: 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
+VL PTRELA QV E+ + + + +YGG Q +K G+DVV+
Sbjct: 75 --DHHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKTGVDVVV 132
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ D IER + L+SLK+ VLDEADEML MGF+ED+E IL D ++ L FSA
Sbjct: 133 GTPGRVIDLIERKLLKLNSLKYFVLDEADEMLNMGFIEDIEKILTFTNDDKRM--LFFSA 190
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV-RHIVLPCSSSARSQVIPDIIRCYS 361
T+P + I+ K+ K +++ + + +T++ I + + + + II +
Sbjct: 191 TMPPEIMKIA----KTHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRIIDL-T 245
Query: 362 SGGRTIIFTETK----ESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
IIF TK E +L D A LHGDI Q+ REVTL F++ K LVAT+
Sbjct: 246 KEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILVATD 305
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK-SSVSKIERE 476
VAARG+DIND+ +I P++VE+Y+HR GRTGRAG G A+ P++ + +I++
Sbjct: 306 VAARGIDINDLSHVINYAVPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQIQKA 365
Query: 477 SGVKFEHISAPQPADIAKAAGVEAAETITQV-SDSVIPAFKSAAEELLNNSGLSAAELLA 535
+ S P D+ +A + I Q+ D+ FK A++LLN + AE +
Sbjct: 366 VKKEIRKESLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLN---MEEAENIV 422
Query: 536 KALAKAVVSAFLFSSSSNSLS 556
+L K S L S+ N +S
Sbjct: 423 ASLLKLTYSDVLDESNYNEIS 443
>gi|407716753|ref|YP_006838033.1| ATP-dependent RNA helicase DeaD-like protein [Cycloclasticus sp.
P1]
gi|407257089|gb|AFT67530.1| ATP-dependent RNA helicase DeaD-like protein [Cycloclasticus sp.
P1]
Length = 594
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 150/398 (37%), Positives = 217/398 (54%), Gaps = 22/398 (5%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ + LK G E PIQA +LDG DL+G A+TG GKT AF LP+L
Sbjct: 14 LSTPVMDALKRIGYEQPSPIQAEAIPHLLDGHDLIGTAQTGTGKTAAFALPLL------- 66
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
SK P VLVL PTRELA QV E F Y ++ G +YGG Q +L
Sbjct: 67 ---SKIDLTVSGPQVLVLAPTRELAIQVAEAFKTYASSMKGFNVLPIYGGQAMDTQLRQL 123
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G+ VV+GTPGR+ DH+ R + L +LK VLDE DEMLRMGF+EDVE IL + + +
Sbjct: 124 RRGVHVVVGTPGRVMDHLRRKTLKLDNLKTIVLDEGDEMLRMGFIEDVEWILEQTPEQRQ 183
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
V LFSAT+P+ ++ ++ K+L S K + ++ K + S + +
Sbjct: 184 VA--LFSATMPAPIRRVADKYLSS-PKVVKIIS--KTSTVERIEQRFWMVSGLHKLDALT 238
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKF 410
I+ G I+F TK +LA+ L A A++GD+ Q+ RE T+ + G+
Sbjct: 239 RILEVEDFDG-IIMFVRTKALTVELAEKLEARGYSASAINGDMTQALRERTIGQLKKGQI 297
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 470
LVAT+VAARG+D+ + ++ + P D EAY+HR GRTGRAG TG A++ PR+ +
Sbjct: 298 DILVATDVAARGIDVARISHVVNYDIPYDTEAYVHRIGRTGRAGRTGKAILFVAPRERRL 357
Query: 471 SK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQV 507
+ IE + + + P + + + T+TQV
Sbjct: 358 LRAIENATRQPIKPMELPTRQQVNEKRANDFKATLTQV 395
>gi|381399445|ref|ZP_09924541.1| DEAD/DEAH box helicase domain protein [Microbacterium
laevaniformans OR221]
gi|380773208|gb|EIC06816.1| DEAD/DEAH box helicase domain protein [Microbacterium
laevaniformans OR221]
Length = 507
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 141/349 (40%), Positives = 204/349 (58%), Gaps = 21/349 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L SKGI FPIQ T + L G D++G+A+TG GKT F +P+++ L
Sbjct: 15 EALASKGIVDAFPIQEQTIPLGLPGQDIIGQAKTGTGKTFGFGIPVVQRL---------- 64
Query: 182 TGYGRAPSV--LVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
G AP V L+++PTRELA QV+ED D+ + +YGG Y Q +LK G
Sbjct: 65 -GLDPAPGVKALIVVPTRELAVQVYEDMDMLTQNRSTSVVAIYGGKAYEGQIDQLKAGAQ 123
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
+V+GTPGR+ D + +DLS VLDEAD+ML +GF+ D+E I KV Q L
Sbjct: 124 IVVGTPGRLIDLNNQRLLDLSGAVEVVLDEADKMLDLGFLADIEKIFQKVAPVRHTQ--L 181
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSAT+P + ++ +F+ S+ I ++ N++H+V S + +VI I++
Sbjct: 182 FSATMPGPIVALARRFM-SNPIHIRATDPDEGLTQANIKHLVYRAHSLDKDEVIARILQA 240
Query: 360 YSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
G +T++FT TK +A +L D L A A+HGD+ Q RE ++A F++GK L+A
Sbjct: 241 EGRG-KTVVFTRTKRAAQKLVDELNDRGFNAGAVHGDMSQEARERSMAAFKAGKKDVLIA 299
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
T+VAARG+D++DV +I P D + Y+HR+GRTGRAG TG+AV D
Sbjct: 300 TDVAARGIDVDDVTHVINHTIPDDEKTYLHRAGRTGRAGKTGIAVTFVD 348
>gi|345001916|ref|YP_004804770.1| DEAD/DEAH box helicase domain-containing protein [Streptomyces sp.
SirexAA-E]
gi|344317542|gb|AEN12230.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. SirexAA-E]
Length = 738
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 206/362 (56%), Gaps = 14/362 (3%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L++ GI S FPIQ MT + L GSD++G+A+TG GKTL F LP+LE +T + +
Sbjct: 32 EALEAVGITSPFPIQEMTLPVALSGSDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGR 91
Query: 182 TGYGR---APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
R AP L+++PTREL +QV D G + +YGG Y Q LKKG+
Sbjct: 92 ATPDRLTDAPQALIVVPTRELCQQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGV 151
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
DVV+GTPGR+ D + +DLS ++ VLDEADEML +GF+ DVE I+ + K QT+
Sbjct: 152 DVVVGTPGRLLDLAGQRKLDLSHIRVLVLDEADEMLDLGFLPDVERIITML--PAKRQTM 209
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P V ++ +++ +++ N V S + +++ I++
Sbjct: 210 LFSATMPGAVISLARRYMSQPTHINATSPDDEGTTVKNTTQFVYRAHSMDKPEMVSRILQ 269
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
S G +IF TK +A+ +A+ L + A+HGD+ Q RE L FR+GK LV
Sbjct: 270 AESR-GLAMIFCRTKRTAADIAEQLERRGFASGAVHGDLGQGAREQALRAFRNGKVDVLV 328
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PRKSSV 470
T+VAARG+D+ V +I + P + + Y+HR GRTGRAG G A+ L D PR +
Sbjct: 329 CTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGTAITLVDWDDIPRWQLI 388
Query: 471 SK 472
+K
Sbjct: 389 NK 390
>gi|284048361|ref|YP_003398700.1| DEAD/DEAH box helicase [Acidaminococcus fermentans DSM 20731]
gi|283952582|gb|ADB47385.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
DSM 20731]
Length = 544
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 214/375 (57%), Gaps = 29/375 (7%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
LK G E PIQ M L+G DL+G+A+TG GKT AF +PI++ K ++K
Sbjct: 34 LKEMGFEEPSPIQKGAIPMALEGEDLIGQAQTGTGKTAAFGIPIIQ-------KINEKDR 86
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
+ +A LV+ PTREL QV ++ G + +YGG P Q LK+GI VVIG
Sbjct: 87 HIQA---LVMSPTRELCIQVADEISKIGKTKRIRVLPVYGGQPIERQIRSLKRGIQVVIG 143
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ DHI RG IDL + F VLDEADEML MGFV+D+E I+ V QT+LFSAT
Sbjct: 144 TPGRLLDHIRRGTIDLEYVNFLVLDEADEMLDMGFVDDMENIIKNVPPER--QTMLFSAT 201
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P + IS K++++ K + + E + A T ++ R +V + R +
Sbjct: 202 MPRPILSISKKYMRAPK--VVAIHKEVVTAPTIDQY-----YYETRDKV-DGLCRILDTT 253
Query: 364 G--RTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
+ IIF TK+ +L L A LHGD+ Q+QR+ + FRSG+ LVAT+
Sbjct: 254 DDCKMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQNQRDRVMKKFRSGQVDILVATD 313
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK-SSVSKIERE 476
VAARGLDI+++ ++ + P D E+Y+HR GRTGRAGNTGVA+ PR+ + IER
Sbjct: 314 VAARGLDIDNITHVVNFDVPSDSESYVHRIGRTGRAGNTGVALTFITPREFRQLKLIER- 372
Query: 477 SGVKFEHISAPQPAD 491
+K + I P D
Sbjct: 373 -SIKTKIIRGTLPTD 386
>gi|440694929|ref|ZP_20877502.1| putative ATP-dependent RNA helicase DeaD [Streptomyces
turgidiscabies Car8]
gi|440282994|gb|ELP70363.1| putative ATP-dependent RNA helicase DeaD [Streptomyces
turgidiscabies Car8]
Length = 1034
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 136/353 (38%), Positives = 203/353 (57%), Gaps = 16/353 (4%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L++ GI + FPIQ MT + L G+D++G+A+TG GKTL F LP+LE +T A +
Sbjct: 49 EALEAVGIITPFPIQEMTLPVALTGTDVIGQAKTGTGKTLGFGLPLLERVT---VPADVE 105
Query: 182 TGYGR------APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
G + AP LV++PTREL +QV D G + +YGG Y Q LK
Sbjct: 106 AGRAKPEQLTEAPQALVVVPTRELCQQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALK 165
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
KG+DV++GTPGR+ D + ++LS ++ VLDEADEML +GF+ DVE I+ + +
Sbjct: 166 KGVDVIVGTPGRLLDLAGQKKLNLSHIRALVLDEADEMLDLGFLPDVEKIMNML--PARR 223
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QT+LFSAT+P V ++ +++ +++ K N V + + +++
Sbjct: 224 QTMLFSATMPGAVIGLARRYMSQPTHIRAAAPDDEGKTVANTAQYVYRAHNMDKPELVAR 283
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411
I++ G ++F TK +A+ LAD L + A+HGD+ Q RE L FR+GK
Sbjct: 284 ILQA-DGRGLAMVFCRTKRTAADLADQLAQRGFASGAVHGDLGQGAREQALRAFRNGKVD 342
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
LV T+VAARG+D+ V +I + P + + Y+HR GRTGRAG G+A+ L D
Sbjct: 343 VLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGIAITLVD 395
>gi|340359575|ref|ZP_08682056.1| ATP-dependent RNA helicase DeaD, partial [Actinomyces sp. oral
taxon 448 str. F0400]
gi|339884370|gb|EGQ74163.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 448
str. F0400]
Length = 512
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 148/369 (40%), Positives = 219/369 (59%), Gaps = 15/369 (4%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLT 172
F + + + L +KGI FPIQA+T + LDG D++G+A+TG GKTL F +P+L ++L
Sbjct: 63 FGVEPEICDALTAKGIIHPFPIQALTLPVALDGQDIIGQAKTGTGKTLGFAIPLLMDTLG 122
Query: 173 NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF 232
G G +P L++LPTRELAKQV E+ V + +YGG Y Q
Sbjct: 123 PGEDGWDADPASG-SPQALIVLPTRELAKQVAEELAVAAAGRTVRIVQVYGGRAYEPQIE 181
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L +G ++V+GTPGR+ D ++RG +DL+ + VLDEADEML +GF+ DVE IL +
Sbjct: 182 ALAEGAEIVVGTPGRLIDLMDRGVLDLTHVTTVVLDEADEMLDLGFLPDVEKILARTR-- 239
Query: 293 NKVQTLLFSATLPSWVKHISTKFL-KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
+ QT+LFSAT+P V ++ +++ K G+E M T + +V + + +
Sbjct: 240 SDRQTMLFSATMPGAVVALARRYMTKPTHIRAQDPGDEGMTVKTT-QQVVYRTHALNKVE 298
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407
V+ I++ + GRTIIF TK + +++AD L ALHGD+ Q RE L FR+
Sbjct: 299 VVARILQA-ADRGRTIIFARTKRTCARVADDLASRGFATAALHGDLGQGAREQALRAFRN 357
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD--- 464
GK LVAT+VAARG+D++DV +I + P D + Y+HR GRTGRAG++G A+ D
Sbjct: 358 GKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGHSGTAITFVDWDD 417
Query: 465 -PRKSSVSK 472
PR +++
Sbjct: 418 IPRWRLIAR 426
>gi|336247347|ref|YP_004591057.1| ATP-dependent RNA helicase DeaD [Enterobacter aerogenes KCTC 2190]
gi|444354540|ref|YP_007390684.1| Cold-shock DEAD-box protein A [Enterobacter aerogenes EA1509E]
gi|334733403|gb|AEG95778.1| ATP-dependent RNA helicase DeaD [Enterobacter aerogenes KCTC 2190]
gi|443905370|emb|CCG33144.1| Cold-shock DEAD-box protein A [Enterobacter aerogenes EA1509E]
Length = 644
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 149/396 (37%), Positives = 217/396 (54%), Gaps = 58/396 (14%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +LDG D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 71 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAP 487
AG G A++ + R+ + + IER + + P
Sbjct: 339 AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELP 374
>gi|319950441|ref|ZP_08024356.1| ATP-dependent DEAD-box RNA helicase DeaD [Dietzia cinnamea P4]
gi|319435905|gb|EFV91110.1| ATP-dependent DEAD-box RNA helicase DeaD [Dietzia cinnamea P4]
Length = 679
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 158/423 (37%), Positives = 236/423 (55%), Gaps = 24/423 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
++ G E IQA T +VL+G D+VG A+TG GKT AF LPIL SL + K+
Sbjct: 64 VRDVGYEVPSAIQAATIPLVLEGRDVVGLAQTGTGKTAAFALPIL-SLIDPSVKS----- 117
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVY-GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P L+L PTRELA QV E Y G + +YGG Y Q L++G +++
Sbjct: 118 ----PQALILAPTRELALQVAEACVTYSAGMPQVNVLPIYGGQAYGIQLSGLRRGAQIIV 173
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+++G +DLS L+ VLDEADEML MGF EDVE IL ++ +V LFSA
Sbjct: 174 GTPGRVIDHLKKGTLDLSGLRHLVLDEADEMLAMGFQEDVERILSDTPESTQVA--LFSA 231
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+PS ++ IS K+L +D + + + R++++ + + + I+
Sbjct: 232 TMPSAIRRISQKYL-TDPTEVKVASKTSTAPTIQQRYVLV--NHRDKLDALTRILEVEDF 288
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
I+F TK + +LA+ L A ++GDI Q+ RE T+ + G+ LVAT+V
Sbjct: 289 DA-MIMFVRTKSATEELAERLRARGFSAAPINGDIPQNLRERTIEALKDGRTDILVATDV 347
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERES 477
AARGLD+ + ++ + P D E+YIHR GRTGRAG +G A++ PR + +S+IER +
Sbjct: 348 AARGLDVPRISHVVNYDIPHDTESYIHRIGRTGRAGRSGHALLFVTPRERRLLSQIERAT 407
Query: 478 GVKFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKSAAEELLNNSGLSAAELLAK 536
+ P D+ + + A++IT+ + D I F+ EE + +S A+ +A
Sbjct: 408 RQPLTEVQLPSVDDVNEMRMAKFAQSITESLDDPNIALFRRLVEEYASEHSVSMAD-IAA 466
Query: 537 ALA 539
ALA
Sbjct: 467 ALA 469
>gi|312194304|ref|YP_004014365.1| DEAD/DEAH box helicase [Frankia sp. EuI1c]
gi|311225640|gb|ADP78495.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
Length = 489
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 138/372 (37%), Positives = 208/372 (55%), Gaps = 21/372 (5%)
Query: 116 ISVPLR--EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
+ VP R L IE+ PIQ T L G D++GR RTG GKTLAF+LP++ L+
Sbjct: 7 LGVPARLTSVLTRLAIETPTPIQRATLPDALAGRDVLGRGRTGSGKTLAFLLPVVARLSG 66
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
GP + AP L+L PTRELA Q+ GLTSC ++GG + Q
Sbjct: 67 GPRAQAG------APRALILAPTRELAAQIDTALQPLAAVAGLTSCTVFGGVGQNPQVAA 120
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
+++G+D+V+ PGR++D I++ + L+ +K VLDEAD M +GF+ V +LG+
Sbjct: 121 IRRGVDIVVACPGRLEDLIKQRHCSLAQVKITVLDEADHMADLGFLPAVRRLLGQTPSGG 180
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
Q +LFSATL + + ++L +K + + + T H++ R +
Sbjct: 181 --QRMLFSATLDKAIDTLVRQYL--NKPAVHEADSAQSPVGTMAHHVL----HVERDSRL 232
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLPGARA----LHGDIQQSQREVTLAGFRSGK 409
P ++ S+ GRT++FT TK A LA L A LHG++ Q+ R L F++G+
Sbjct: 233 PVLVDLSSAPGRTVVFTRTKHGAKALARHLNRAGVPTVELHGNLSQNARTRNLDDFQTGR 292
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK-S 468
LVAT++AARG+ ++DV L+I +PP D +AY+HRSGRT RAGN+G + L +
Sbjct: 293 AAALVATDIAARGIHVDDVALVIHADPPADHKAYLHRSGRTARAGNSGTVITLATTDQLR 352
Query: 469 SVSKIERESGVK 480
VS++ R +G+K
Sbjct: 353 EVSQLARTAGIK 364
>gi|359777418|ref|ZP_09280699.1| putative ATP-dependent RNA helicase [Arthrobacter globiformis NBRC
12137]
gi|359305196|dbj|GAB14528.1| putative ATP-dependent RNA helicase [Arthrobacter globiformis NBRC
12137]
Length = 622
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 150/409 (36%), Positives = 231/409 (56%), Gaps = 32/409 (7%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L E L ++GIES FPIQ T L G D++GR RTG GKT+AF +P++ L A
Sbjct: 13 LSETLAAQGIESPFPIQVKTLPDTLAGRDVLGRGRTGSGKTIAFAIPLVARL------AE 66
Query: 180 KKTGYGRAPSV---LVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKK 236
++ Y R P LVL PTRELA Q++ + A+GL + +YGG QE L+
Sbjct: 67 REAAYFRKPGRPMGLVLAPTRELATQINATIEPLAKAMGLNTTVIYGGISQARQEKALRA 126
Query: 237 GIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQ 296
G+D+VI PGR++D I + + L +++ VLDEAD M +GF+ V+ ++ ++ Q
Sbjct: 127 GVDIVIACPGRLEDLIRQRILTLEAVEVTVLDEADHMADLGFLPVVKKLMDMTP--SQGQ 184
Query: 297 TLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDI 356
LLFSATL + V I ++L + V + + +T H+++ + + Q+I
Sbjct: 185 RLLFSATLDNGVDKIVQRYLSN--PLTHSVDDPQAAVTTMEHHVLVVNDQTVKKQLI--- 239
Query: 357 IRCYSSGGRTIIFTETKESASQLADLLPGARA----LHGDIQQSQREVTLAGFRSGKFMT 412
+ S GR ++F TK A +LA L A LHG++ Q+ R+ LA F SG+
Sbjct: 240 VELASGAGRRVLFMRTKHHARKLAKTLTDAGIPAVDLHGNLSQNARDRNLAEFSSGEVRV 299
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP-RKSSVS 471
LVAT+VAARG+ ++DV+L+I +PP + +AY+HRSGRT RAG+ G V L P +++ V
Sbjct: 300 LVATDVAARGVHVDDVELVIHVDPPTEHKAYLHRSGRTARAGSDGTVVTLTLPEQQTDVR 359
Query: 472 KIERESG--VKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSA 518
K+ + +G V FE ++A P A+ + +++D V P ++A
Sbjct: 360 KLMKAAGVDVSFERVTASSPI---------VADLVGEIADKVDPRTRAA 399
>gi|385786988|ref|YP_005818097.1| ATP-dependent RNA helicase DeaD [Erwinia sp. Ejp617]
gi|310766260|gb|ADP11210.1| ATP-dependent RNA helicase DeaD [Erwinia sp. Ejp617]
Length = 638
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 148/382 (38%), Positives = 218/382 (57%), Gaps = 31/382 (8%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
++ L E L G PIQA +L G D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LNADLLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHE---DFDVYGGAVGLTSCCLYGGAPYHAQEF 232
T +AP +LVL PTRELA QV E DF + GL LYGG Y Q
Sbjct: 71 TV--------KAPQILVLAPTRELAVQVAEAVTDFSKH--MRGLNVVALYGGQRYDVQLR 120
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G VV+GTPGR+ DH++RG +DLS+L+ VLDEADEMLRMGF+EDVE I+ ++ D
Sbjct: 121 ALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDG 180
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QT LFSAT+P ++ I+ +F+K ++ ++++S R + +A +
Sbjct: 181 H--QTALFSATMPEAIRRITKRFMKDPQEV-------RIQSSLTTRPDISQSYWTAYGRK 231
Query: 353 IPDIIRCYSSG--GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFR 406
+ R + IIF TK + ++A+ L + AL+GD+ Q+ RE TL +
Sbjct: 232 TDALTRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLK 291
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG G A++ + R
Sbjct: 292 DGRLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENR 351
Query: 467 KSSVSK-IERESGVKFEHISAP 487
+ + + IER + + P
Sbjct: 352 ERRLLRNIERTMKLTIPEVELP 373
>gi|292486843|ref|YP_003529713.1| cold-shock DEAD box protein A [Erwinia amylovora CFBP1430]
gi|292900759|ref|YP_003540128.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
gi|428783772|ref|ZP_19001265.1| Cold-shock DEAD box protein A [Erwinia amylovora ACW56400]
gi|291200607|emb|CBJ47739.1| ATP-dependent RNA helicase (cold-shock dead-box protein) [Erwinia
amylovora ATCC 49946]
gi|291552260|emb|CBA19297.1| Cold-shock DEAD box protein A [Erwinia amylovora CFBP1430]
gi|312170911|emb|CBX79170.1| Cold-shock DEAD box protein A [Erwinia amylovora ATCC BAA-2158]
gi|426277487|gb|EKV55212.1| Cold-shock DEAD box protein A [Erwinia amylovora ACW56400]
Length = 638
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 146/380 (38%), Positives = 217/380 (57%), Gaps = 27/380 (7%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
++ L E L G PIQA +L G D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LNADLLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
T +AP +LVL PTRELA QV E + + GL LYGG Y Q L
Sbjct: 71 TV--------KAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G VV+GTPGR+ DH++RG +DLS+L+ VLDEADEMLRMGF+EDVE I+ ++ D +
Sbjct: 123 RQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R + +A +
Sbjct: 182 -QTALFSATMPEAIRRITKRFMKDPQEV-------RIQSSMTTRPDISQSYWTAYGRKTD 233
Query: 355 DIIRCYSSG--GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408
+ R + IIF TK + ++A+ L + AL+GD+ Q+ RE TL + G
Sbjct: 234 ALTRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG 293
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS 468
+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG G A++ + R+
Sbjct: 294 RLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRER 353
Query: 469 SVSK-IERESGVKFEHISAP 487
+ + IER + + P
Sbjct: 354 RLLRNIERTMKLTIPEVELP 373
>gi|50954624|ref|YP_061912.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50951106|gb|AAT88807.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 491
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 136/357 (38%), Positives = 208/357 (58%), Gaps = 17/357 (4%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S I + + L +KGI FPIQ T + L G D++G+A+TG GKT F LPI++ L
Sbjct: 4 SELNIDQDMVDALAAKGITEPFPIQTQTIPLALTGQDIIGQAKTGTGKTFGFGLPIIQRL 63
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
P + LV++PTRELA QV+ED + + +YGG Y Q
Sbjct: 64 GADPEPGVQ---------ALVVVPTRELAVQVYEDLEQAASNRPTSIAAIYGGKAYEGQI 114
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
+LK G VV+GTPGR+ D + ++LS+++ VLDEAD+ML +GF+ D+E + +
Sbjct: 115 AQLKAGAQVVVGTPGRLLDLAGQRLLNLSTVREMVLDEADKMLDLGFLSDIEKLFAQTPA 174
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
T+LFSAT+P + ++ +F+ + I ++ + N++H+V S + +
Sbjct: 175 TR--HTMLFSATMPGPIVALARRFM-TRPIHIRATDPDEGQIQANIKHLVYRAHSLDKDE 231
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407
V+ I++ G +T+IFT TK SA++L + L A A+HGD+ Q QRE +A F++
Sbjct: 232 VVARILQSEGRG-KTVIFTRTKRSAAKLMEELNDRGFNAAAVHGDLNQEQRERAMAAFKA 290
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
GK L+AT+VAARG+D++DV +I P D + Y+HR+GRTGRAG +G+AV D
Sbjct: 291 GKKDVLIATDVAARGIDVDDVTHVINHTIPDDEKTYLHRAGRTGRAGKSGIAVTFVD 347
>gi|404252844|ref|ZP_10956812.1| putative helicase [Sphingomonas sp. PAMC 26621]
Length = 492
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 151/389 (38%), Positives = 217/389 (55%), Gaps = 22/389 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L+ + G PIQA +L G DLV A+TG GKT AFVLP+++ L G ++A
Sbjct: 12 LQRAVNESGYTEPTPIQASAIPSILMGKDLVAVAQTGTGKTAAFVLPMIDILGEGRSRA- 70
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
R P L+L PTRELA QV E+F+ YG L+ L GG Q L+KG+D
Sbjct: 71 ------RMPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLIGGVSMGDQTAALEKGVD 124
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
V+I TPGR+ D RG I L+ V+DEAD ML MGF+ D+E I K+ QTLL
Sbjct: 125 VLIATPGRLMDLFGRGKILLTGCSMLVIDEADRMLDMGFIPDIEEICTKLPKTR--QTLL 182
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSAT+P +K ++ KFL + KTI++ A+ N++ ++P +++ + + ++R
Sbjct: 183 FSATMPPPIKKLADKFL-DNPKTIEVA--RPATANVNIKQWLVPVTAAKKRDTLMKLLRS 239
Query: 360 --YSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQREVTLAGFRSGKFMTL 413
+G IIF+ K + +L L A +HGD++QSQR L F+ G+ L
Sbjct: 240 EDVQTG---IIFSNRKTTVRELNKALQRAGFASSEIHGDMEQSQRIAELDRFKKGEVKIL 296
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSK 472
VA++VAARG+DI V + + P + Y+HR GRTGRAG TG+A P + ++
Sbjct: 297 VASDVAARGIDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGATGIAFTFATPDDAENIQN 356
Query: 473 IERESGVKFEHISAPQPADIAKAAGVEAA 501
IE+ +G+K E + PA +AK A V A
Sbjct: 357 IEKLTGLKIERYTTGDPAPVAKEAPVAEA 385
>gi|354604010|ref|ZP_09022003.1| hypothetical protein HMPREF9450_00918 [Alistipes indistinctus YIT
12060]
gi|353348442|gb|EHB92714.1| hypothetical protein HMPREF9450_00918 [Alistipes indistinctus YIT
12060]
Length = 645
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 141/352 (40%), Positives = 204/352 (57%), Gaps = 35/352 (9%)
Query: 124 LKSKGIESLFPIQAMTFDMVLD---GSDLVGRARTGQGKTLAFVLPILESLT--NGPTKA 178
+K+KG E+ PIQ +T ++LD +D++ +A+TG GKT AF LP+LE LT GP +
Sbjct: 20 IKAKGFETPSPIQKLTIPVLLDEDKHNDIIAQAQTGTGKTAAFGLPVLERLTPKKGPVQG 79
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
L+L+PTRELA QV E+ + L +YGGA Q +L KG+
Sbjct: 80 ------------LILVPTRELALQVTEELLSFNKYSKLVITAIYGGASMSEQLRRLGKGV 127
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
D+V+GTPGRI DH+ RG ++L L++ +LDEADEML MGF++DVE IL + D ++ L
Sbjct: 128 DIVVGTPGRILDHLRRGTLNLKELQYLILDEADEMLNMGFIDDVEAILAESNDYRRI--L 185
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P+ + +S +++K D + + + E T+ I S + + II
Sbjct: 186 LFSATMPARIVELSKRYMK-DVEVLRVPSQEMTTDLTD--QIYFEVRDSDKFDALTRIID 242
Query: 359 C----YSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410
Y I+F TK + +L L A LHGD+ Q+QRE L F++ +
Sbjct: 243 VEPEFYG-----IVFCRTKVAVDELVTRLTQRGYAAEGLHGDVSQAQREKILKKFKNKQV 297
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
L AT+VAARG+DIN++ +I P+D E+Y+HR GRTGRAGNTG A+
Sbjct: 298 TILAATDVAARGIDINNLTHVINYSLPQDSESYVHRIGRTGRAGNTGTAITF 349
>gi|421911614|ref|ZP_16341367.1| Cold-shock DEAD-box protein A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|410114518|emb|CCM83992.1| Cold-shock DEAD-box protein A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
Length = 647
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 149/396 (37%), Positives = 217/396 (54%), Gaps = 58/396 (14%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +LDG D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 71 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAP 487
AG G A++ + R+ + + IER + + P
Sbjct: 339 AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELP 374
>gi|425074694|ref|ZP_18477797.1| cold-shock DEAD box protein A [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|425085330|ref|ZP_18488423.1| cold-shock DEAD box protein A [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|405594897|gb|EKB68287.1| cold-shock DEAD box protein A [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|405607362|gb|EKB80331.1| cold-shock DEAD box protein A [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
Length = 632
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 149/396 (37%), Positives = 217/396 (54%), Gaps = 58/396 (14%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +LDG D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 71 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAP 487
AG G A++ + R+ + + IER + + P
Sbjct: 339 AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELP 374
>gi|152972086|ref|YP_001337232.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|378980866|ref|YP_005229007.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|386036718|ref|YP_005956631.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae KCTC 2242]
gi|402778831|ref|YP_006634377.1| cold-shock DEAD-box protein A [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|419972232|ref|ZP_14487661.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419978227|ref|ZP_14493524.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419984967|ref|ZP_14500111.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419989183|ref|ZP_14504160.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419995311|ref|ZP_14510118.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420001328|ref|ZP_14515984.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420007134|ref|ZP_14521629.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420013015|ref|ZP_14527327.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420018738|ref|ZP_14532934.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420026290|ref|ZP_14540293.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420029664|ref|ZP_14543493.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420037498|ref|ZP_14551152.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420041292|ref|ZP_14554789.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420047454|ref|ZP_14560771.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420052763|ref|ZP_14565943.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420060310|ref|ZP_14573311.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420064910|ref|ZP_14577718.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420072124|ref|ZP_14584765.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420076856|ref|ZP_14589325.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420081955|ref|ZP_14594258.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|424832555|ref|ZP_18257283.1| cold-shock DEAD box protein A [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|424931609|ref|ZP_18349981.1| Cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
[Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|425083353|ref|ZP_18486450.1| cold-shock DEAD box protein A [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|425093477|ref|ZP_18496561.1| cold-shock DEAD box protein A [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|428149569|ref|ZP_18997383.1| Cold-shock DEAD-box protein A [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|428939370|ref|ZP_19012480.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae VA360]
gi|449059561|ref|ZP_21737255.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae hvKP1]
gi|150956935|gb|ABR78965.1| cold-shock DeaD box ATP-dependent RNA helicase [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|339763846|gb|AEK00067.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae KCTC 2242]
gi|364520277|gb|AEW63405.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397352060|gb|EJJ45141.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397352510|gb|EJJ45589.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397353285|gb|EJJ46360.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397368064|gb|EJJ60672.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397370015|gb|EJJ62607.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397372219|gb|EJJ64715.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397380926|gb|EJJ73104.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397385246|gb|EJJ77350.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397389981|gb|EJJ81903.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397395420|gb|EJJ87126.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397402875|gb|EJJ94470.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397405429|gb|EJJ96892.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397417240|gb|EJK08409.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397418899|gb|EJK10053.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397424895|gb|EJK15783.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397432748|gb|EJK23405.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397434171|gb|EJK24811.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397439610|gb|EJK30049.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397446812|gb|EJK37020.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397452682|gb|EJK42749.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|402539782|gb|AFQ63931.1| Cold-shock DEAD-box protein A [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|405598554|gb|EKB71756.1| cold-shock DEAD box protein A [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|405611022|gb|EKB83811.1| cold-shock DEAD box protein A [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|407805796|gb|EKF77047.1| Cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
[Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|414709998|emb|CCN31702.1| cold-shock DEAD box protein A [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|426304059|gb|EKV66212.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae VA360]
gi|427540329|emb|CCM93521.1| Cold-shock DEAD-box protein A [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|448874725|gb|EMB09758.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae hvKP1]
Length = 643
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 149/396 (37%), Positives = 217/396 (54%), Gaps = 58/396 (14%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +LDG D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 71 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAP 487
AG G A++ + R+ + + IER + + P
Sbjct: 339 AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELP 374
>gi|421919438|ref|ZP_16348940.1| Cold-shock DEAD-box protein A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|410118289|emb|CCM91565.1| Cold-shock DEAD-box protein A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
Length = 643
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 149/396 (37%), Positives = 217/396 (54%), Gaps = 58/396 (14%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +LDG D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 71 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAP 487
AG G A++ + R+ + + IER + + P
Sbjct: 339 AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELP 374
>gi|428183253|gb|EKX52111.1| hypothetical protein GUITHDRAFT_65410, partial [Guillardia theta
CCMP2712]
Length = 442
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 145/372 (38%), Positives = 211/372 (56%), Gaps = 20/372 (5%)
Query: 108 PNAVSRFR-ISVP--LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
P+ FR + VP L+++L G IQA T+ L G D++G A+TG GKTL F+
Sbjct: 60 PDPFFTFRELPVPQVLQDQLLRAGFSGPSVIQAQTWPAALKGRDVIGVAKTGSGKTLGFL 119
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
+P + N K + P +LVL PTRELA Q+ E+ +G + + SCC+YGG
Sbjct: 120 VPGFMHIMNDGLKNPRM-----GPLILVLAPTRELATQIQEECIKFGSCIHIRSCCVYGG 174
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
AP Q +L+ G +VI TPGR+ D +E+G I+L + + V DEAD ML MGF +
Sbjct: 175 APKGPQLRELRSGAHIVIATPGRLNDFLEQGMINLQQVSYLVFDEADRMLDMGFEPQIRK 234
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN-EKMKASTNVRHI--V 341
IL ++ K QTL ++AT P V+ +++ FL DK I +G+ + + A+ +V + V
Sbjct: 235 ILDRI--PGKRQTLFYTATWPKEVRRLASDFL--DKPCIVYIGDTDTLVANKDVTQVIKV 290
Query: 342 LPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQ----LADLLPGARALHGDIQQSQ 397
+ + ++ DIIR G R IIF TK Q L+ ++P A A+HGD Q Q
Sbjct: 291 IDDRFGEKDMILQDIIRGEGVGSRIIIFCSTKRMCDQLERNLSRMVPCA-AIHGDKDQGQ 349
Query: 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG 457
R L F++G+ ++AT+VAARGLDI +V+ +I E P + E YIHR GRTGRAG G
Sbjct: 350 RTRILNDFKAGQCCVMIATDVAARGLDIKEVKAVINYEFPSNTEDYIHRIGRTGRAGAKG 409
Query: 458 VAVMLYDPRKSS 469
A + + +S
Sbjct: 410 TAYTFFTKKDAS 421
>gi|294783794|ref|ZP_06749118.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium sp.
1_1_41FAA]
gi|294480672|gb|EFG28449.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium sp.
1_1_41FAA]
Length = 529
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 163/441 (36%), Positives = 238/441 (53%), Gaps = 28/441 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKT 182
L KG ES PIQ +T +L + D++G+A+TG GKT AF LPI+E+
Sbjct: 23 LSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPIIENFETS-------- 74
Query: 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
+VL PTRELA QV E+ + + + +YGG Q +K G+DVV+
Sbjct: 75 --DHHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKTGVDVVV 132
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ D IER + L+SLK+ VLDEADEML MGF+ED+E IL D ++ L FSA
Sbjct: 133 GTPGRVIDLIERKLLKLNSLKYFVLDEADEMLNMGFIEDIEKILTFTNDDKRM--LFFSA 190
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV-RHIVLPCSSSARSQVIPDIIRCYS 361
T+P + I+ K+ K +++ + + +T++ I + + + + II +
Sbjct: 191 TMPPEIMKIA----KTHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRIIDL-T 245
Query: 362 SGGRTIIFTETK----ESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
IIF TK E +L D A LHGDI Q+ REVTL F++ K LVAT+
Sbjct: 246 KEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILVATD 305
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK-SSVSKIERE 476
VAARG+DIND+ +I P++VE+Y+HR GRTGRAG G A+ P++ + +I++
Sbjct: 306 VAARGIDINDLSHVINYAVPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQIQKA 365
Query: 477 SGVKFEHISAPQPADIAKAAGVEAAETITQV-SDSVIPAFKSAAEELLNNSGLSAAELLA 535
+ S P D+ +A + I Q+ D+ FK A++LLN + AE +
Sbjct: 366 VKKEIRKESLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLN---MEEAENIV 422
Query: 536 KALAKAVVSAFLFSSSSNSLS 556
+L K S L S+ N +S
Sbjct: 423 ASLLKLTYSDVLDESNYNEIS 443
>gi|433602752|ref|YP_007035121.1| DEAD/DEAH box helicase domain protein [Saccharothrix espanaensis
DSM 44229]
gi|407880605|emb|CCH28248.1| DEAD/DEAH box helicase domain protein [Saccharothrix espanaensis
DSM 44229]
Length = 874
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 144/356 (40%), Positives = 202/356 (56%), Gaps = 21/356 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQ +T + L G D++G+ARTG GKTL F +P+L+ +T G
Sbjct: 113 LAEAGIERAFAIQELTLPLALAGDDVIGQARTGTGKTLGFGIPLLQRIT--------VPG 164
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
G P LV++PTREL QV D +G+ +YGG PY Q L+KG+D+V+G
Sbjct: 165 DG-TPQALVVVPTRELCLQVTHDLTDAAKHLGVRVMAIYGGRPYEPQINALRKGVDLVVG 223
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D E+ ++ L ++ VLDEADEML +GF+ D+E IL V D + QT+LFSAT
Sbjct: 224 TPGRLLDLAEQRHLVLGKVRGLVLDEADEMLDLGFLPDIERILRMVPD--ERQTMLFSAT 281
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P + ++ FL + N+ V + +++++ ++
Sbjct: 282 MPGPIITLARTFLNQPTH-VRAEENDAGAIHERTEQFVYRAHALDKTELLARALQARDR- 339
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
G +IFT TK +A ++AD + A A+HGD+ Q RE L FRSGK LVAT+VA
Sbjct: 340 GLCMIFTRTKRTAQKVADEMVERGFAAAAVHGDLGQGAREQALRAFRSGKIDVLVATDVA 399
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PRKSSVS 471
ARG+D+ V +I + P D + Y+HR GRTGRAG TGVAV L D PR S+S
Sbjct: 400 ARGIDVEGVTHVINYQCPEDEKTYVHRIGRTGRAGRTGVAVTLVDWDEMPRWKSIS 455
>gi|407789204|ref|ZP_11136306.1| ATP-dependent RNA helicase DeaD [Gallaecimonas xiamenensis 3-C-1]
gi|407207182|gb|EKE77125.1| ATP-dependent RNA helicase DeaD [Gallaecimonas xiamenensis 3-C-1]
Length = 591
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 146/375 (38%), Positives = 218/375 (58%), Gaps = 22/375 (5%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
P+ + L G + PIQA ++L+G D++G A+TG GKT AF LP+L A
Sbjct: 13 PIMQALDDLGFVTPSPIQASCIPLLLEGRDVLGIAQTGTGKTAAFGLPLL---------A 63
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPYHAQEFKLKKG 237
T G P +LVL PTRELA+QV +G GL LYGG+P+ Q L++G
Sbjct: 64 GIDTRQG-VPQLLVLAPTRELAQQVAAALVDFGRHMTGLKVVTLYGGSPFGPQRNDLRRG 122
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
VV+ TPGR+ DH++RG++ L +++ VLDEADEMLRMGF+EDVE ILG+ D QT
Sbjct: 123 AQVVVATPGRMIDHLDRGSLTLDTIQAVVLDEADEMLRMGFIEDVERILGETPDDR--QT 180
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSATLP ++++ KF+ D + + + + + I++ + V+ ++
Sbjct: 181 ALFSATLPPMIRNLVAKFM-GDYQEVKVSAPAQTVDRITQKGIMV--FEEHKPAVLTRVL 237
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
IIF TK++ LA+ L A A++GD+ Q +RE + + G+ +
Sbjct: 238 EAEEFDA-AIIFARTKDATVTLAEHLNQNGFKATAMNGDLGQKEREAAVEALKDGRLDIV 296
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSK 472
VAT+VAARGLD+ + L++ + PR+ +AY+HR GRTGRAG TG AV+LY PR + + +
Sbjct: 297 VATDVAARGLDVERIGLVVNYDIPREPDAYVHRIGRTGRAGRTGTAVLLYTPRERFLLGR 356
Query: 473 IERESGVKFEHISAP 487
IE+ + K + + P
Sbjct: 357 IEKVTRQKVDAMELP 371
>gi|134102495|ref|YP_001108156.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
gi|291004114|ref|ZP_06562087.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
gi|133915118|emb|CAM05231.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
Length = 578
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 151/363 (41%), Positives = 206/363 (56%), Gaps = 25/363 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G E+ PIQA T +L+G D++G A+TG GKT AF LPIL L KT
Sbjct: 17 LSEIGYETPSPIQAQTIPPLLEGHDVMGLAQTGTGKTAAFALPILSRL-----DLDAKT- 70
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P LVL PTRELA QV E F Y + G +YGG Y Q LK+G VV+
Sbjct: 71 ----PQALVLAPTRELAIQVAEAFQRYAAHLPGFHVLPIYGGQSYGPQLAGLKRGAHVVV 126
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+ +G++DL+ LK VLDEADEMLRMGF+EDVE IL V + +V LFSA
Sbjct: 127 GTPGRVIDHLNKGSLDLTGLKNLVLDEADEMLRMGFIEDVETILQSVPEQRQVA--LFSA 184
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P ++ IS +L ++ I + + R+I P A+ + I+ +
Sbjct: 185 TMPPQIRKISQSYL-NEPVEISVKTKTTTATNITQRYI--PVRGPAKLDALTRILEVETF 241
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
I+F TK+ +LA+ L A A++GDI Q+ RE T+ R G+ LVAT+V
Sbjct: 242 DA-MIVFVRTKQLTEELAEKLQARGFSAAAINGDIPQAARERTIGHLREGRVDILVATDV 300
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK----SSVSKIE 474
AARGLD+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ S+ K
Sbjct: 301 AARGLDVERISHVLNYDIPHDSESYVHRIGRTGRAGRSGEAILFVSPRERHMLRSIEKAT 360
Query: 475 RES 477
R+S
Sbjct: 361 RQS 363
>gi|372488022|ref|YP_005027587.1| DNA/RNA helicase [Dechlorosoma suillum PS]
gi|359354575|gb|AEV25746.1| DNA/RNA helicase, superfamily II [Dechlorosoma suillum PS]
Length = 641
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 149/395 (37%), Positives = 220/395 (55%), Gaps = 29/395 (7%)
Query: 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
+ ++ +S P+ + L G E+ IQA ++++G DL+G A+TG GKT AF LP+L
Sbjct: 6 DTFAQLGLSEPILQALTDVGYETPSSIQAECIPLLMEGKDLLGMAQTGTGKTAAFALPLL 65
Query: 169 ESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPY 227
+ L R P LVL PTRELA QV E Y + G +YGG
Sbjct: 66 QKLDV----------TQRFPQALVLAPTRELAIQVAEACQKYAKHLPGFHVLPIYGGQSL 115
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q +L++G V+IGTPGR+ DH+ER ++DLS LK VLDEADEMLRMGF++DVE IL
Sbjct: 116 GIQLKQLQRGAHVIIGTPGRVMDHLERKSLDLSRLKTLVLDEADEMLRMGFIDDVEWILE 175
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN----VRHIVLP 343
+ + QT LFSAT+P ++ ++ K+L+ ++ K+K++T+ ++
Sbjct: 176 HI--PAERQTALFSATMPEQIRRVAQKYLRDPQEV-------KIKSATSTVSAIQQRYWQ 226
Query: 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQRE 399
S + + I+ S IIF TK + +LA L A AL+GD+ Q+ RE
Sbjct: 227 VSGLHKLDALTRIMEVEDSLDAAIIFVRTKTATEELAQKLEARGYAAAALNGDMNQASRE 286
Query: 400 VTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 459
+ +SG ++AT+VAARG+D+ V +I + P DVEAY+HR GRTGRAG TG A
Sbjct: 287 RVIEQLKSGGLDIVIATDVAARGIDVPRVSHVINYDIPYDVEAYVHRIGRTGRAGRTGTA 346
Query: 460 VMLYDPRKSSVSK-IERESGVKFEHISAPQPADIA 493
++ PR+ + + IE+ + + P D+A
Sbjct: 347 ILFVSPREMRMLRTIEKVTRQNISPLRLPTKQDVA 381
>gi|188532510|ref|YP_001906307.1| ATP-dependent RNA helicase DeaD [Erwinia tasmaniensis Et1/99]
gi|188027552|emb|CAO95399.1| Cold-shock DEAD-box protein A [Erwinia tasmaniensis Et1/99]
Length = 636
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 148/382 (38%), Positives = 218/382 (57%), Gaps = 31/382 (8%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
++ L E L G PIQA +L G D++G A+TG GKT AF LP+L ++ P
Sbjct: 16 LNADLLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNID--P 73
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHE---DFDVYGGAVGLTSCCLYGGAPYHAQEF 232
T +AP +LVL PTRELA QV E DF + GL LYGG Y Q
Sbjct: 74 TV--------KAPQILVLAPTRELAVQVAEAVTDFSKH--MRGLNVVALYGGQRYDVQLR 123
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G VV+GTPGR+ DH++RG +DLS+L+ VLDEADEMLRMGF+EDVE I+ ++ D
Sbjct: 124 ALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDG 183
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QT LFSAT+P ++ I+ +F+K ++ ++++S R + +A +
Sbjct: 184 H--QTALFSATMPEAIRRITKRFMKDPQEV-------RIQSSLTTRPDISQSYWTAYGRK 234
Query: 353 IPDIIRCYSSG--GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFR 406
+ R + IIF TK + ++A+ L + AL+GD+ Q+ RE TL +
Sbjct: 235 TDALTRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLK 294
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG G A++ + R
Sbjct: 295 DGRLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENR 354
Query: 467 KSSVSK-IERESGVKFEHISAP 487
+ + + IER + + P
Sbjct: 355 ERRLLRNIERTMKLTIPEVELP 376
>gi|262066543|ref|ZP_06026155.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium
periodonticum ATCC 33693]
gi|291379777|gb|EFE87295.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium
periodonticum ATCC 33693]
Length = 528
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 164/441 (37%), Positives = 239/441 (54%), Gaps = 29/441 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKT 182
L KG ES PIQ +T +L + D++G+A+TG GKT AF LPI+E+
Sbjct: 23 LSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPIIENFE---------- 72
Query: 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
+ +VL PTRELA QV E+ + + + +YGG Q +K G+DVV+
Sbjct: 73 -HSDHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKTGVDVVV 131
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ D IER + L+SLK+ VLDEADEML MGFVED+E IL D ++ L FSA
Sbjct: 132 GTPGRVIDLIERKLLKLNSLKYFVLDEADEMLNMGFVEDIEKILTFTNDDKRM--LFFSA 189
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV-RHIVLPCSSSARSQVIPDIIRCYS 361
T+P + I+ K+ K +++ + + +T++ I + + + + II +
Sbjct: 190 TMPPEIMKIA----KTHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRIIDL-T 244
Query: 362 SGGRTIIFTETK----ESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
IIF TK E +L D A LHGDI Q+ REVTL F++ K LVAT+
Sbjct: 245 KEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILVATD 304
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK-SSVSKIERE 476
VAARG+DIND+ +I P++VE+Y+HR GRTGRAG G A+ P++ + +I++
Sbjct: 305 VAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQIQKA 364
Query: 477 SGVKFEHISAPQPADIAKAAGVEAAETITQV-SDSVIPAFKSAAEELLNNSGLSAAELLA 535
+ S P D+ +A + I Q+ D+ FK A++LLN + AE +
Sbjct: 365 VKKEIRKESLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLN---MEEAENIV 421
Query: 536 KALAKAVVSAFLFSSSSNSLS 556
+L K S L S+ N +S
Sbjct: 422 ASLLKLTYSDVLDESNYNEIS 442
>gi|262042721|ref|ZP_06015875.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259039946|gb|EEW41063.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 634
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 149/396 (37%), Positives = 217/396 (54%), Gaps = 58/396 (14%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +LDG D++G A+TG GKT AF LP+L ++ P
Sbjct: 29 LKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNID--P 86
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 87 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 138
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 139 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 197
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 198 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 234
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 235 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGD 294
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 295 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 354
Query: 453 AGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAP 487
AG G A++ + R+ + + IER + + P
Sbjct: 355 AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELP 390
>gi|399543837|ref|YP_006557145.1| ATP-dependent RNA helicase DeaD [Marinobacter sp. BSs20148]
gi|399159169|gb|AFP29732.1| ATP-dependent RNA helicase DeaD [Marinobacter sp. BSs20148]
Length = 504
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 149/379 (39%), Positives = 205/379 (54%), Gaps = 22/379 (5%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E + + G E+ PIQA +L G L+G A+TG GKT AF LP+L S+
Sbjct: 17 EAVTAVGYETPTPIQAQAIPALLSGRHLLGVAQTGTGKTAAFALPLL----------SRV 66
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDV 240
AP +LVL PTRELA QV E F Y + +YGG + Q L++G V
Sbjct: 67 DPSVNAPQILVLAPTRELAIQVAEAFSTYASKLPNFHVLPIYGGQDFFPQIKGLRRGAHV 126
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
++GTPGR+ DH+ +G + L +LK VLDEADEMLRMGF++DVE IL K D Q LF
Sbjct: 127 IVGTPGRMLDHLRKGTLKLDNLKALVLDEADEMLRMGFIDDVEAILSKTPD--NCQRALF 184
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P +K ++ +LK +++ + + VLP + + + I+
Sbjct: 185 SATMPPQIKKVAQTYLKD---AVEVRIESASRTVDAISQYVLPVYAERKLDALTRILEVE 241
Query: 361 SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
+IIF TK LA+ L A L+GD+ Q QRE T+ + GK +VAT
Sbjct: 242 PFDA-SIIFVRTKAETIVLAEKLAARGHAAAPLNGDLNQRQREQTVEDLKRGKKDIVVAT 300
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIER 475
+VAARGLD+ + +I + P D EAYIHR GRTGRAG G A++L PR +S + +ER
Sbjct: 301 DVAARGLDVPRITHVINYDVPYDTEAYIHRIGRTGRAGRDGKAILLVTPRERSWLRTLER 360
Query: 476 ESGVKFEHISAPQPADIAK 494
+ E P PA + K
Sbjct: 361 ATNATMEAYELPSPAALQK 379
>gi|451343566|ref|ZP_21912637.1| hypothetical protein HMPREF9943_00862 [Eggerthia catenaformis OT
569 = DSM 20559]
gi|449337663|gb|EMD16820.1| hypothetical protein HMPREF9943_00862 [Eggerthia catenaformis OT
569 = DSM 20559]
Length = 519
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 145/394 (36%), Positives = 215/394 (54%), Gaps = 26/394 (6%)
Query: 127 KGIESL-----FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
KGIE + PIQ + ++L G D++G+A+TG GKTLAF +L K
Sbjct: 14 KGIEKMGFVSPSPIQEKSIPVLLTGKDVIGQAQTGTGKTLAFGSVLLS-----------K 62
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
G ++L PTRELA Q++E+ G GL C+YGG+ Q +K G+D+V
Sbjct: 63 IQPGERVQAIILSPTRELALQIYEELTRIGHFTGLRYTCVYGGSNIEKQIRTIKSGVDIV 122
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
IGTPGR+ D + R + L + + VLDEADEML MGF+ED+E IL V QT+LFS
Sbjct: 123 IGTPGRVMDLMRRKVLKLDGIHYFVLDEADEMLNMGFIEDIETILSSVPLER--QTILFS 180
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
AT+P +K I++ ++K D + I + + K +T V+ ++ + + + ++
Sbjct: 181 ATMPEGIKKIASSYMKEDYEHIQIKSVQ--KTATTVKQYFYVVKNNVKFEAVCRVLDSIE 238
Query: 362 SGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
IIF TK S +L + L + ++HGDI Q R TL F+ + L+AT+
Sbjct: 239 KES-IIIFCRTKRSVDELTNQLATHKFHVASIHGDIDQDARMRTLRRFKEKQIPILIATD 297
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK-SSVSKIERE 476
VAARG+D++ V +I E P++ E YIHR GRTGRAG TG+A PR+ + + IER+
Sbjct: 298 VAARGIDVDHVSHVINYELPQEDELYIHRIGRTGRAGQTGIAYSFVSPREINYLRSIERK 357
Query: 477 SGVKFEHISAPQPADIAKAAGVEAAETITQVSDS 510
+ FE + P DI E E + + D+
Sbjct: 358 TKSHFEELKIPSVDDIFNQKIKELLEDVQHILDA 391
>gi|433649450|ref|YP_007294452.1| DNA/RNA helicase, superfamily II [Mycobacterium smegmatis JS623]
gi|433299227|gb|AGB25047.1| DNA/RNA helicase, superfamily II [Mycobacterium smegmatis JS623]
Length = 566
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 147/401 (36%), Positives = 219/401 (54%), Gaps = 28/401 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES IQA T ++ GSD+VG A+TG GKT AF +PIL SK R
Sbjct: 32 GYESPSAIQAATIPAMMAGSDVVGLAQTGTGKTAAFAIPIL----------SKIDPTSRV 81
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGR 247
LVL PTRELA QV E F YG + + +YGG+ Y Q LK+G VV+GTPGR
Sbjct: 82 TQALVLAPTRELALQVAEAFSRYGAHLHVNVLPVYGGSSYGPQLAGLKRGAQVVVGTPGR 141
Query: 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSW 307
+ DH+E+G +D+S L + VLDEADEML+MGF EDVE IL + +V LFSAT+P
Sbjct: 142 VIDHLEKGTLDVSHLDYMVLDEADEMLQMGFAEDVERILADTPEYKQVA--LFSATMPPG 199
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTI 367
++ I+ K+L +++ K + + N+ + + + + ++ I
Sbjct: 200 IRKITKKYLHD---PVEVTVKSKTQTAENISQRYIQVAGPRKMDALTRLLEVEPFEA-MI 255
Query: 368 IFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423
+F TK++ ++A+ L A A++GDI Q+ RE T+ ++G L+AT+VAARGL
Sbjct: 256 VFVRTKQATEEVAEKLRARGFSAAAINGDIPQAVRERTINSLKNGSLDILIATDVAARGL 315
Query: 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFE 482
D+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR + ++ IER + K
Sbjct: 316 DVERISHVLNYDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLNSIERVTRQKLV 375
Query: 483 HISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELL 523
P D+ A+ + + DS+ A + +L
Sbjct: 376 ESQLPSVDDV-------NAQRVEKFRDSITTALSAPGIDLF 409
>gi|409358710|ref|ZP_11237069.1| dead/deah box helicase [Dietzia alimentaria 72]
Length = 539
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 150/369 (40%), Positives = 207/369 (56%), Gaps = 31/369 (8%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNG-PTKASKKT 182
L +GI F IQ +T + L GSDL+G+ARTG GKT F +P+L + G T++ T
Sbjct: 60 LAERGITHTFAIQELTLPLALAGSDLIGQARTGMGKTYGFGVPLLHRIATGEATRSLDGT 119
Query: 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC-----------LYGGAPYHAQE 231
P LV++PTREL QV +D + A GLT+ +YGG PY Q
Sbjct: 120 -----PRALVIVPTRELCVQVTQDLKI--AATGLTASTENRTRPLKVLSIYGGTPYEQQV 172
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
L+KG+DVV+GTPGR+ D + + L ++ VLDEADEML +GF+ D+E IL V +
Sbjct: 173 DALEKGVDVVVGTPGRLLDLANQSKLVLGKVEVLVLDEADEMLDLGFLPDIEKILRMVPE 232
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
K QT+LFSAT+P + ++ FL + I + N V S + +
Sbjct: 233 --KRQTMLFSATMPGPIITLARTFL-TKPTHIRAEAADSGATHENTTQYVYRAHSMDKPE 289
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407
V+ I++ G T+IFT TK +A +LAD L A+HGD+ Q RE +L FR+
Sbjct: 290 VVSRILQADGRGA-TMIFTRTKRTAQKLADDLAERGYSVGAIHGDLGQGAREKSLKAFRT 348
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD--- 464
G+ LVAT+VAARG+D++DV +I + P D + Y+HR GRTGRAG GVAV L D
Sbjct: 349 GEVDVLVATDVAARGIDVDDVTHVINYQCPEDEKTYVHRIGRTGRAGRKGVAVTLVDWDD 408
Query: 465 -PRKSSVSK 472
PR + K
Sbjct: 409 LPRWGLIDK 417
>gi|400536166|ref|ZP_10799701.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium colombiense CECT 3035]
gi|400330248|gb|EJO87746.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium colombiense CECT 3035]
Length = 567
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 149/402 (37%), Positives = 219/402 (54%), Gaps = 29/402 (7%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES IQA T ++ GSD+VG A+TG GKT AF +PIL + T A
Sbjct: 32 GYESPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILSKIDVTST----------A 81
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
LVL PTRELA QV E F YG + + +YGG+ Y Q L++G VV+GTPG
Sbjct: 82 TQALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYSVQLAGLRRGAHVVVGTPG 141
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+ERG +DLS + + VLDEADEML MGF E+V+ IL + + +V LFSAT+P
Sbjct: 142 RVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQVA--LFSATMPP 199
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ I+TK+L +++ K + N+ + + + + ++
Sbjct: 200 AIRKITTKYLHD---PLEVSTKAKTATAENISQRYIQVAGPRKMDALTRVLEVEPFEA-M 255
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK++ ++A+ L A A++GDI Q QRE T+A + G LVAT+VAARG
Sbjct: 256 IVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGSIDILVATDVAARG 315
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKF 481
LD+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + K IE+ +
Sbjct: 316 LDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLKAIEKATRQTL 375
Query: 482 EHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELL 523
P D+ A+ + + +DS+ A S EL
Sbjct: 376 TEAELPTVEDV-------NAQRVAKFADSITTALGSPGIELF 410
>gi|227524|prf||1705300A ATP dependent RNA helicase
Length = 604
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 143/353 (40%), Positives = 205/353 (58%), Gaps = 21/353 (5%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKASKKTG--YGR--AP 188
P+Q + +V +G DL A+TG GKT F+ P+L ES GP+ + G Y R P
Sbjct: 167 PVQKYSVPIVANGRDLKACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYP 226
Query: 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI 248
+ +++ PTRELA Q+ ++ + + +C +YGG+P Q ++++G D+++ TPGR+
Sbjct: 227 TAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRL 286
Query: 249 KDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV-----QTLLFSAT 303
D +ERG I L+++K+ VLDEAD ML MGF + I VED + QTL+FSAT
Sbjct: 287 NDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHI---VEDCDMTPVGERQTLMFSAT 343
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
P+ ++H++ FL I L S N+ VL + + + D++ S+
Sbjct: 344 FPADIQHLARDFLSD---YIFLSVGRVGSTSENITQKVLYVENQDKKSALLDLLSA-STD 399
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
G T+IF ETK A QL D L A A+HGD QS+RE LA FRSG LVAT VA
Sbjct: 400 GLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVA 459
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
ARGLDI +V +I + P DV+ Y+HR GRTGRAGNTG+A ++ S++ K
Sbjct: 460 ARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVK 512
>gi|313893137|ref|ZP_07826714.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral
taxon 158 str. F0412]
gi|313442490|gb|EFR60905.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral
taxon 158 str. F0412]
Length = 523
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 154/426 (36%), Positives = 230/426 (53%), Gaps = 39/426 (9%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
IS P+ L G E PIQ + + G D++G+A+TG GKT AF LP+LE +
Sbjct: 10 ISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVD--- 66
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
G R V++L PTRELA QV E+ + +T+ +YGG + Q LK
Sbjct: 67 -------GNERHVQVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALK 119
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
K +++ TPGR+ DH++RG+I +K VLDEADEML MGFV+D+ ILG + + +
Sbjct: 120 KNPQIIVATPGRLMDHMDRGSIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDH-- 177
Query: 296 QTLLFSATLPSWVKHISTKFL--------KSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
QTLLFSAT+P ++ ++ +L K + T+DL+ ++ + VL C
Sbjct: 178 QTLLFSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVL-CR-- 234
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLA 403
+ DI + IIFT TK ++ + L A +HGD+ Q +R+ +
Sbjct: 235 -----LFDI----QTPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIR 285
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
FR G LVAT+VAARGLDI+ V + + P+D E+Y HR GRTGRAG G A
Sbjct: 286 QFREGTIDILVATDVAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFV 345
Query: 464 DPRK-SSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSV--IPAFKSAAE 520
PR+ + IER + K AP ++ + A E++ +++D++ + FK++AE
Sbjct: 346 IPREMEHLHAIERLTKRKISRRRAPSLGEVLEGQQRLAIESLVEMTDNLEALAPFKTSAE 405
Query: 521 ELLNNS 526
ELLN++
Sbjct: 406 ELLNDT 411
>gi|401842749|gb|EJT44825.1| DED1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 609
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 146/367 (39%), Positives = 209/367 (56%), Gaps = 21/367 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKA 178
L E +K P+Q + +V +G DL+ A+TG GKT F+ P+L ES GP+
Sbjct: 157 LLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQ 216
Query: 179 SKKTG--YGR--APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ G Y + P+ +++ PTRELA Q+ ++ + + +C +YGG+P Q ++
Sbjct: 217 PESQGSFYQKKAYPTAVIMAPTRELATQIFDESKKFTYRSWVKACVVYGGSPIGNQLREI 276
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G D+++ TPGR+ D +ERG I LS++K+ VLDEAD ML MGF + I VED +
Sbjct: 277 ERGCDLLVATPGRLNDLLERGKISLSNVKYLVLDEADRMLDMGFEPQIRHI---VEDCDM 333
Query: 295 V-----QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
QTL+FSAT P+ ++H++ FL I L S N+ VL + +
Sbjct: 334 TPVGARQTLMFSATFPADIQHLARDFLSD---YIFLSVGRVGSTSENITQKVLYVENQDK 390
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGF 405
+ D++ S+ G T+IF ETK A QL D L A A+HGD QS+RE LA F
Sbjct: 391 KSALLDLLSA-STDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAF 449
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
RSG LVAT VAARGLDI +V +I + P DV+ Y+HR GRTGRAGNTGVA ++
Sbjct: 450 RSGTASLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGVATAFFNS 509
Query: 466 RKSSVSK 472
++ K
Sbjct: 510 ENGNIVK 516
>gi|306819140|ref|ZP_07452854.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris ATCC 35239]
gi|304648116|gb|EFM45427.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris ATCC 35239]
Length = 523
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 142/357 (39%), Positives = 200/357 (56%), Gaps = 7/357 (1%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F + + L KGI FPIQA+T + ++ D++G+A+TG GKTL F +PIL +
Sbjct: 35 SDFGVEPEIVAALADKGIIHPFPIQALTLPVAIERHDIIGQAKTGTGKTLGFAIPILHDI 94
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
+ + AP LVLLPTRELAKQV + +YGG + +Q
Sbjct: 95 IGPGDEGWDELPSPGAPQALVLLPTRELAKQVAAEIRAAASHRVARILEIYGGVGFDSQI 154
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
LK G++VV+GTPGR+ D ++ G + L ++ VLDEADEML MGF+ DVE+++
Sbjct: 155 QSLKDGVEVVVGTPGRLIDLMKHGELQLKEVRTLVLDEADEMLDMGFLPDVEVLIAAT-- 212
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
+ T+LFSAT+P V ++ +++ ++ K V S + +
Sbjct: 213 PPERHTMLFSATMPGPVVALARRYMYQPTHIRAADPSDDSKTVRQVHQFAYRVHSMNKEE 272
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407
V+ I++ + G TIIFT TK S +LAD L A A+HGD+ QS RE L FR
Sbjct: 273 VVARILQAKNRG-LTIIFTRTKRSCQRLADELTNRGFAAGAIHGDLNQSARERALRAFRH 331
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
GK LVAT+VAARG+D++DV +I E P D + YIHR GRT RAG++G AV D
Sbjct: 332 GKVDVLVATDVAARGIDVDDVTHVINFECPEDEKTYIHRIGRTARAGHSGTAVTFVD 388
>gi|290511539|ref|ZP_06550908.1| ATP-dependent RNA helicase DeaD [Klebsiella sp. 1_1_55]
gi|289776532|gb|EFD84531.1| ATP-dependent RNA helicase DeaD [Klebsiella sp. 1_1_55]
Length = 659
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 149/396 (37%), Positives = 217/396 (54%), Gaps = 58/396 (14%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +LDG D++G A+TG GKT AF LP+L ++ P
Sbjct: 29 LKAPILEALNDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNID--P 86
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 87 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 138
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 139 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 197
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 198 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 234
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 235 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD 294
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 295 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 354
Query: 453 AGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAP 487
AG G A++ + R+ + + IER + + P
Sbjct: 355 AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELP 390
>gi|429083696|ref|ZP_19146725.1| Cold-shock DEAD-box protein A [Cronobacter condimenti 1330]
gi|426547315|emb|CCJ72766.1| Cold-shock DEAD-box protein A [Cronobacter condimenti 1330]
Length = 637
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 164/451 (36%), Positives = 239/451 (52%), Gaps = 62/451 (13%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L ++
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNIDETL 72
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E D G+ LYGG Y Q L
Sbjct: 73 ----------RAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS+LK VLDEADEMLRMGF+EDVE I+ ++ +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVETIMAQIPAEH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y S G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWSVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVE--AAETITQVSD 509
AG G A++ + R+ + + IER + + P A++ +E AA+ Q+
Sbjct: 339 AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPN-AELLGKRRLEKFAAKVQQQLES 397
Query: 510 SVIPAFKSAAEELLNNSGLSAAELLAKALAK 540
S + +++ +L L E LA AL K
Sbjct: 398 SDLDQYRALLTKLQPEGELD-VETLAAALLK 427
>gi|326519741|dbj|BAK00243.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 649
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 135/347 (38%), Positives = 212/347 (61%), Gaps = 13/347 (3%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
LRE ++ G + PIQA ++ + L GSD+V A+TG GKTL ++LP + N + +
Sbjct: 173 LRE-VQQAGFSAPSPIQAQSWPIALKGSDIVAVAKTGSGKTLGYLLPGFILVKN--LRHN 229
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
+ G P+VLVL PTRELA Q+ ++ +G + ++S CLYGGAP Q L++G D
Sbjct: 230 SRDG----PTVLVLSPTRELATQIQDEAIKFGRSSRISSTCLYGGAPKGPQLRDLERGAD 285
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
+V+ TPGR+ D +E G + L + + VLDEAD ML MGF + I+ +V+ K QTL+
Sbjct: 286 IVVATPGRLNDILEMGKVSLRQVAYLVLDEADRMLDMGFEPQIRKIVKQVQP--KRQTLM 343
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
F+AT P V+ I++ L ++ +++ +++ A+ ++ V +S + + + I+R
Sbjct: 344 FTATWPREVRKIASDLL-TNPVQVNIGNTDELVANKSITQYVEVTTSMEKGRRLDQILRQ 402
Query: 360 YSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
G + IIF TK QL+ L GA A+HGD Q++R+ L+ FR+G+ LVAT
Sbjct: 403 QEPGSKVIIFCSTKRMCDQLSRNLSRQYGASAIHGDKSQAERDSVLSEFRTGRCPILVAT 462
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
+VAARGLD+ D+++++ + P VE Y+HR GRTGRAG +G+A +
Sbjct: 463 DVAARGLDVKDIRVVVNYDFPTGVEDYVHRIGRTGRAGASGIAYTFF 509
>gi|193212281|ref|YP_001998234.1| DEAD/DEAH box helicase domain-containing protein [Chlorobaculum
parvum NCIB 8327]
gi|193085758|gb|ACF11034.1| DEAD/DEAH box helicase domain protein [Chlorobaculum parvum NCIB
8327]
Length = 647
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 145/380 (38%), Positives = 213/380 (56%), Gaps = 22/380 (5%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
+++ PL + L++ G E+ PIQA T ++L+G D++G+A+TG GKT AF LP L ++
Sbjct: 22 LQLAEPLLQALEAVGYETPTPIQANTIPLLLEGRDVLGQAQTGTGKTAAFALPTLSNIDL 81
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEF 232
+ P VLVL PTRELA QV E F Y + +YGG Y Q
Sbjct: 82 SLSD----------PQVLVLAPTRELAIQVAEAFHTYAEFMPDFHVLPIYGGQDYGVQIR 131
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
LK+G+ VV+GTPGR+ DH+ +G ++L LK VLDEADEMLRMGF++DVE IL + ++
Sbjct: 132 MLKRGVHVVVGTPGRVMDHMRKGTLNLDGLKCLVLDEADEMLRMGFIDDVEWILDQTPES 191
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+V LFSAT+P + I+ K+LK+ ++ K +R +
Sbjct: 192 RQVA--LFSATMPQPILRIARKYLKA---PAEITIQAKTTTVETIRQRYWMVGGHHKLDA 246
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSG 408
+ I+ G IIF TK LA+ L A AL+GD+ QS RE T+ + G
Sbjct: 247 LTRILEVEPFDG-IIIFVRTKTETVNLAEKLQARGYLAAALNGDMVQSARERTIEQLKDG 305
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-K 467
++AT+VAARGLD++ + +I + P D E+Y+HR GRTGRAG +G A++ PR +
Sbjct: 306 TLNIVIATDVAARGLDVDRISHVINYDIPTDTESYVHRIGRTGRAGRSGEAILFVSPRER 365
Query: 468 SSVSKIERESGVKFEHISAP 487
+ IER + + + + P
Sbjct: 366 GMLFAIERATRKRIDKMELP 385
>gi|443307170|ref|ZP_21036957.1| rhlE [Mycobacterium sp. H4Y]
gi|442764538|gb|ELR82536.1| rhlE [Mycobacterium sp. H4Y]
Length = 509
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 142/351 (40%), Positives = 204/351 (58%), Gaps = 18/351 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L KGIES F IQ +T + L G DL+G+ARTG GKT AF +P+L+ +T+G + +
Sbjct: 25 LAEKGIESPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQRITSG----TAERP 80
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG------LTSCCLYGGAPYHAQEFKLKKG 237
P L+++PTREL QV +D + + L+ +YGG PY AQ L+ G
Sbjct: 81 LNGTPRALIVVPTRELCLQVTDDLALAAKHLTADEGRRLSVVPIYGGRPYEAQIEALRAG 140
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
DVV+GTPGR+ D ++G++ L L VLDEADEML +GF+ D+E IL ++ Q+
Sbjct: 141 ADVVVGTPGRLLDLSQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIP--VDRQS 198
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
+LFSAT+P + ++ F+ + T V++ + + +++ I+
Sbjct: 199 MLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQY-AYRAHALDKVELVSRIL 257
Query: 358 RCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTL 413
+ G T+IFT TK +A ++AD L A+HGD+ Q RE L FR+G L
Sbjct: 258 QAEGRGA-TMIFTRTKRTAQKVADELAERGFAVGAVHGDLGQVAREKALKAFRTGDIDVL 316
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
VAT+VAARG+DI+DV +I + P D +AY+HR GRTGRAG TGVAV L D
Sbjct: 317 VATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKTGVAVTLVD 367
>gi|238896669|ref|YP_002921414.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|329997852|ref|ZP_08302922.1| cold-shock DEAD-box protein A [Klebsiella sp. MS 92-3]
gi|419764847|ref|ZP_14291086.1| cold-shock DEAD-box protein A [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gi|238548996|dbj|BAH65347.1| cold-shock DeaD box ATP-dependent RNA helicase [Klebsiella
pneumoniae subsp. pneumoniae NTUH-K2044]
gi|328538887|gb|EGF64951.1| cold-shock DEAD-box protein A [Klebsiella sp. MS 92-3]
gi|397741975|gb|EJK89194.1| cold-shock DEAD-box protein A [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
Length = 659
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 149/396 (37%), Positives = 217/396 (54%), Gaps = 58/396 (14%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +LDG D++G A+TG GKT AF LP+L ++ P
Sbjct: 29 LKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNID--P 86
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 87 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 138
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 139 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 197
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 198 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 234
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 235 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGD 294
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 295 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 354
Query: 453 AGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAP 487
AG G A++ + R+ + + IER + + P
Sbjct: 355 AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELP 390
>gi|27904825|ref|NP_777951.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
gi|31340034|sp|Q89AF9.1|DEAD_BUCBP RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
Full=ATP-dependent RNA helicase DeaD homolog
gi|27904223|gb|AAO27056.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
Length = 602
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 149/416 (35%), Positives = 232/416 (55%), Gaps = 28/416 (6%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQA ++ G D++G A+TG GKT AF LP+L ++ R P +LVL
Sbjct: 31 PIQAACIPYLIKGKDVLGMAQTGSGKTAAFALPLLHNIKLDV----------RVPQILVL 80
Query: 194 LPTRELAKQVHEDFDVYGGA-VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI 252
PTRELA QV E F + +G+ LYGG Y Q L+KG +++GTPGR+ DH+
Sbjct: 81 TPTRELAVQVAEAFSNFSKKLIGVHVLALYGGQRYDLQLKSLRKGPQIIVGTPGRLLDHL 140
Query: 253 ERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 312
+R + LS+L VLDEADEMLRMGF+EDVE I+ ++ D + QT LFSAT+P ++ IS
Sbjct: 141 KRRTLSLSNLHSLVLDEADEMLRMGFIEDVETIMTEIPDRH--QTALFSATMPEAIRRIS 198
Query: 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS--GGRTIIFT 370
+F+K+ K+ +++++ R + + +IR + TIIF
Sbjct: 199 RRFMKNPKEI-------RIQSNITTRPDIQQSYWMVYGKKTDALIRFLEAEDFSATIIFV 251
Query: 371 ETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426
TK + +++++L + AL+GD+ QS RE TL + G+ L+AT+VAARGLD++
Sbjct: 252 RTKNATLEVSEVLERYGYNSAALNGDMNQSLREQTLEKLKDGRLDILIATDVAARGLDVD 311
Query: 427 DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKFEHIS 485
+ +I + P D E+Y+HR GRTGRAG G A++ + R+ + + IER + ++
Sbjct: 312 RISFVINYDIPMDSESYVHRIGRTGRAGRKGKALLFVENRERRLLRNIERAMNISISEVN 371
Query: 486 APQPADIAKAAGVEAAETI-TQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAK 540
P+ ++K + A+ + Q+ + ++ +L N+ E LA AL K
Sbjct: 372 LPKSDFLSKRRLEKFAQKVQIQLDSKDLHEYRGLLPKLQPNNNSLDIESLAAALLK 427
>gi|418421660|ref|ZP_12994833.1| ATP-dependent DEAD-box RNA helicase [Mycobacterium abscessus subsp.
bolletii BD]
gi|363995576|gb|EHM16793.1| ATP-dependent DEAD-box RNA helicase [Mycobacterium abscessus subsp.
bolletii BD]
Length = 490
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 144/356 (40%), Positives = 204/356 (57%), Gaps = 22/356 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ L+ GIE F IQ +T + L GSDL+G+ARTG GKT AF +P+L + G +
Sbjct: 19 QALREAGIEHPFAIQELTLPLALAGSDLIGQARTGMGKTYAFGVPLLHRIATG----VED 74
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFD-----VYGGAVGLTSCCLYGGAPYHAQEFKLKK 236
P LV++PTREL QV+ED + G T +YGG PY Q L+
Sbjct: 75 RPLNGTPRALVVVPTRELCIQVYEDLTKASKYLSAGDREFTVVSIYGGRPYEPQIEALRA 134
Query: 237 GIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK-V 295
G DVV+GTPGR+ D ++G++ L L VLDEADEML +GF+ D+E IL A+
Sbjct: 135 GADVVVGTPGRLLDLAQQGHLQLGGLAMLVLDEADEMLDLGFLPDIERILALAPSADAGR 194
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST---NVRHIVLPCSSSARSQV 352
Q++LFSAT+P + ++ F+ + E +AS+ + V + + ++
Sbjct: 195 QSMLFSATMPDPIITLARTFMNRPTH----IRAEDPQASSVHDSTEQFVYRAHALDKIEL 250
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408
+ I++ G T+IFT TK +A +++D L A+HGD+ Q RE LA FRSG
Sbjct: 251 VSRILQAEGRGA-TMIFTRTKRTAQKVSDELAERGFAVGAVHGDLGQIAREKALASFRSG 309
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
+ LVAT+VAARG+DI+DV +I + P D + Y+HR GRTGRAG TG+AV L D
Sbjct: 310 QINVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGRTGIAVTLVD 365
>gi|407785286|ref|ZP_11132434.1| ATP-dependent RNA helicase [Celeribacter baekdonensis B30]
gi|407203318|gb|EKE73305.1| ATP-dependent RNA helicase [Celeribacter baekdonensis B30]
Length = 542
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 145/376 (38%), Positives = 205/376 (54%), Gaps = 23/376 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
++ G E+ PIQA L+G D++G A+TG GKT +FVLP++ L+ G +A
Sbjct: 39 IEDAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFVLPMITLLSRGRARA----- 93
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
R P LVL PTRELA QV E+FD Y + LT L GG + Q+ + KG+DV+I
Sbjct: 94 --RMPRSLVLCPTRELAAQVAENFDTYTKYMKLTKALLIGGVSFKEQDILIDKGVDVLIA 151
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ DH ERG + LS +K V+DEAD ML MGF+ D+E I G QTL FSAT
Sbjct: 152 TPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPFTR--QTLFFSAT 209
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS------SARSQVIPDII 357
+ ++ I+ FL + + V + +H+V+ +S S + Q++ +I
Sbjct: 210 MAPEIERITNTFLSAPARI--EVARQASSGENIEQHVVMFKASRRDRAASEKRQLLRTLI 267
Query: 358 RCYSSG-GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMT 412
I+F K ++ L A +HGD++QSQR TL GFR GK
Sbjct: 268 DLEGEKLDNAIVFCNRKTDVDIVSQSLKKYGYDAAPIHGDLEQSQRNATLEGFRGGKLKI 327
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVS 471
LVA++VAARGLD+ V + + P E Y+HR GRTGRAG G +ML +PR + + +
Sbjct: 328 LVASDVAARGLDVPSVTHVFNFDVPSHAEDYVHRIGRTGRAGRDGKTIMLCEPRDEKNFA 387
Query: 472 KIERESGVKFEHISAP 487
+ER G + + P
Sbjct: 388 DVERLIGKEIPRLDNP 403
>gi|429091566|ref|ZP_19154234.1| Cold-shock DEAD-box protein A [Cronobacter dublinensis 1210]
gi|426743896|emb|CCJ80347.1| Cold-shock DEAD-box protein A [Cronobacter dublinensis 1210]
Length = 638
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 164/451 (36%), Positives = 239/451 (52%), Gaps = 62/451 (13%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L ++
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLHNIDETL 72
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E D G+ LYGG Y Q L
Sbjct: 73 ----------RAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS+LK VLDEADEMLRMGF+EDVE I+ ++ +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVETIMAQIPAEH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y S G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWSVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVE--AAETITQVSD 509
AG G A++ + R+ + + IER + + P A++ +E AA+ Q+
Sbjct: 339 AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPN-AELLGKRRLEKFAAKVQQQLES 397
Query: 510 SVIPAFKSAAEELLNNSGLSAAELLAKALAK 540
S + +++ +L L E LA AL K
Sbjct: 398 SDLDQYRALLTKLQPEGELD-VETLAAALLK 427
>gi|329295922|ref|ZP_08253258.1| ATP-dependent RNA helicase DeaD [Plautia stali symbiont]
Length = 617
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 144/374 (38%), Positives = 215/374 (57%), Gaps = 27/374 (7%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L G PIQA +L G D++G A+TG GKT AF LP+L ++ P+
Sbjct: 19 ESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLNNVD--PSV---- 72
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDV 240
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L++G +
Sbjct: 73 ----RAPQILVLAPTRELAVQVAEAMTEFSKHMRGINVVALYGGQRYDVQLRALRQGPQI 128
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGR+ DH++RG +DLSSL+ VLDEADEMLRMGF+EDVE I+ ++ + + QT LF
Sbjct: 129 VVGTPGRLLDHLKRGTLDLSSLRGLVLDEADEMLRMGFIEDVETIMAQIPEGH--QTALF 186
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P ++ I+ +F+K ++ +M++S R + +A + ++R
Sbjct: 187 SATMPEAIRRITKRFMKDPQEV-------RMQSSITTRPDISQSYWTAYGRKSDALVRFL 239
Query: 361 SSG--GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ IIF TK + ++A+ L + AL+GD+ Q+ RE TL + G+ L+
Sbjct: 240 EAEDFDAAIIFVRTKNATLEVAETLERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 299
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-I 473
AT+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG G A++ + R+ + + I
Sbjct: 300 ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 359
Query: 474 ERESGVKFEHISAP 487
ER + + P
Sbjct: 360 ERTMKLTIPEVELP 373
>gi|329939625|ref|ZP_08288926.1| putative ATP-dependent RNA helicase [Streptomyces griseoaurantiacus
M045]
gi|329301195|gb|EGG45090.1| putative ATP-dependent RNA helicase [Streptomyces griseoaurantiacus
M045]
Length = 848
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 143/366 (39%), Positives = 209/366 (57%), Gaps = 22/366 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L++ GI + FPIQ MT + L GSD++G+A+TG GKTL F LP+LE ++ A +
Sbjct: 55 EALEAVGILNPFPIQEMTLPVALSGSDVIGQAKTGTGKTLGFGLPLLERVS---VPADVE 111
Query: 182 TGYGR------APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
G R P LV++PTREL QV D G + +YGG Y Q LK
Sbjct: 112 AGRARPEDVTNTPQALVVVPTRELCVQVTNDLLTAGKVRNVRVTAIYGGRAYEPQVEALK 171
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
KG+DVV+GTPGR+ D + ++L+ ++ VLDEADEML +GF+ DVE I+G + +
Sbjct: 172 KGVDVVVGTPGRLLDLAGQKKLNLAHVRCLVLDEADEMLDLGFLPDVEKIIGMLP--ARR 229
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAS-TNVRHIVLPCSSSARSQVIP 354
QT+LFSAT+P V ++ +++ S I E + N++ V S + ++I
Sbjct: 230 QTMLFSATMPGAVISLARRYM-SQPTHIRATSPEGEGVTLANIKQFVYRAHSMDKPEMIA 288
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410
I++ G +IF TK +A+ +A+ L + A+HGD+ Q RE L FR+GK
Sbjct: 289 RILQAEGR-GLAMIFCRTKRTAADIAEQLQQRGFASGAVHGDLGQGAREQALRAFRNGKV 347
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PR 466
LV T+VAARG+D+ V +I + P D + Y+HR+GRTGRAG +G A+ D PR
Sbjct: 348 DVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRTGRTGRAGASGTAITFVDWDDIPR 407
Query: 467 KSSVSK 472
++K
Sbjct: 408 WQLINK 413
>gi|227875859|ref|ZP_03993985.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243]
gi|269977494|ref|ZP_06184466.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris 28-1]
gi|307700011|ref|ZP_07637060.1| putative DEAD-box ATP-dependent RNA helicase CshA [Mobiluncus
mulieris FB024-16]
gi|227843607|gb|EEJ53790.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243]
gi|269934410|gb|EEZ90972.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris 28-1]
gi|307614772|gb|EFN93992.1| putative DEAD-box ATP-dependent RNA helicase CshA [Mobiluncus
mulieris FB024-16]
Length = 523
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 142/357 (39%), Positives = 200/357 (56%), Gaps = 7/357 (1%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F + + L KGI FPIQA+T + ++ D++G+A+TG GKTL F +PIL +
Sbjct: 35 SDFGVEPEIVAALADKGIIHPFPIQALTLPVAIERHDIIGQAKTGTGKTLGFAIPILHDI 94
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
+ + AP LVLLPTRELAKQV + +YGG + +Q
Sbjct: 95 IGPGDEGWDELPSPGAPQALVLLPTRELAKQVAAEIRAAASHRVARILEIYGGVGFDSQI 154
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
LK G++VV+GTPGR+ D ++ G + L ++ VLDEADEML MGF+ DVE+++
Sbjct: 155 QSLKDGVEVVVGTPGRLIDLMKHGELQLKEVRTLVLDEADEMLDMGFLPDVEVLIAAT-- 212
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
+ T+LFSAT+P V ++ +++ ++ K V S + +
Sbjct: 213 PPERHTMLFSATMPGPVVALARRYMYQPTHIRAADPSDDSKTVRQVHQFAYRVHSMNKEE 272
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407
V+ I++ + G TIIFT TK S +LAD L A A+HGD+ QS RE L FR
Sbjct: 273 VVARILQAKNRG-LTIIFTRTKRSCQRLADELTNRGFAAGAIHGDLNQSARERALRAFRH 331
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
GK LVAT+VAARG+D++DV +I E P D + YIHR GRT RAG++G AV D
Sbjct: 332 GKVDVLVATDVAARGIDVDDVTHVINFECPEDEKTYIHRIGRTARAGHSGTAVTFVD 388
>gi|332304872|ref|YP_004432723.1| DEAD/DEAH box helicase domain protein [Glaciecola sp. 4H-3-7+YE-5]
gi|410642867|ref|ZP_11353376.1| ATP-dependent RNA helicase DeaD [Glaciecola chathamensis S18K6]
gi|410646139|ref|ZP_11356593.1| ATP-dependent RNA helicase DeaD [Glaciecola agarilytica NO2]
gi|332172201|gb|AEE21455.1| DEAD/DEAH box helicase domain protein [Glaciecola sp. 4H-3-7+YE-5]
gi|410134478|dbj|GAC04992.1| ATP-dependent RNA helicase DeaD [Glaciecola agarilytica NO2]
gi|410137750|dbj|GAC11563.1| ATP-dependent RNA helicase DeaD [Glaciecola chathamensis S18K6]
Length = 576
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 153/416 (36%), Positives = 231/416 (55%), Gaps = 39/416 (9%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L + L+ G E PIQA ++++G DL+G A+TG GKT AF LP+L ++ +
Sbjct: 18 LLQALEKVGYEKPTPIQAQCIPLIMEGHDLLGTAQTGTGKTAAFALPMLANVDANNSNTQ 77
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGI 238
+LVL PTRELA QV E F VY + L +YGG+ Y Q +L++G
Sbjct: 78 ----------LLVLAPTRELAIQVAEAFQVYASFSRKLNVLPIYGGSSYDNQIRQLRRGA 127
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
VV+GTPGR+ DHI++G + L +LKF VLDEADEMLRMGF++DVE IL + QT
Sbjct: 128 QVVVGTPGRVIDHIKKGTLKLDNLKFLVLDEADEMLRMGFIDDVEWILSHA--PAERQTA 185
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P ++ I+ ++L SD K + + K+ ++ ++ + + + + I+
Sbjct: 186 LFSATMPDPIRKITKRYL-SDPKQVKI--ESKVATASTIKQRYCQVAGHHKLEALTRIME 242
Query: 359 CYSSGGRTIIFTETKESASQLADLLPGARA-----LHGDIQQSQREVTLAGFRSGKFMTL 413
IIF TK + +L++ L AR L+GDI Q+ RE T+ + GK L
Sbjct: 243 VEEFDA-VIIFVRTKTATMELSEKL-SARGYAVEPLNGDIPQNSRERTVERLKRGKIDIL 300
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSK 472
VAT+V ARGLD+ V +I + P D E+Y+HR GRTGRAG G A++ R K +
Sbjct: 301 VATDVVARGLDVERVSHVINYDVPYDTESYVHRIGRTGRAGRQGDAILFISHREKRMLFS 360
Query: 473 IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGL 528
IER + + + P +I+Q++++ + FKS+ E +++S +
Sbjct: 361 IERATRQSIDPMPIP---------------SISQLNETRLSRFKSSVIEAISDSSI 401
>gi|109896747|ref|YP_660002.1| DEAD/DEAH box helicase [Pseudoalteromonas atlantica T6c]
gi|109699028|gb|ABG38948.1| ATP-dependent RNA helicase CsdA [Pseudoalteromonas atlantica T6c]
Length = 579
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 159/443 (35%), Positives = 239/443 (53%), Gaps = 54/443 (12%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L + L+ G E PIQA ++++G DL+G A+TG GKT AF LP+L ++ +
Sbjct: 18 LLQALEKVGYEKPTPIQAQCIPLIMEGHDLLGTAQTGTGKTAAFALPMLANVDANNSNTQ 77
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGI 238
+LVL PTRELA QV E F VY + L +YGG+ Y Q +L++G
Sbjct: 78 ----------LLVLAPTRELAIQVAEAFQVYASFSRKLNVLPIYGGSSYDNQIRQLRRGA 127
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
VV+GTPGR+ DHI++G + L +LKF VLDEADEMLRMGF++DVE IL + QT
Sbjct: 128 QVVVGTPGRVIDHIKKGTLKLDNLKFLVLDEADEMLRMGFIDDVEWILSHA--PAERQTA 185
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P ++ I+ ++L SD K + + K+ ++ ++ + + + + I+
Sbjct: 186 LFSATMPDPIRKITKRYL-SDPKQVKI--ESKVATASTIKQRYCQVAGHHKLEALTRIME 242
Query: 359 CYSSGGRTIIFTETKESASQLADLLPGARA-----LHGDIQQSQREVTLAGFRSGKFMTL 413
IIF TK + +L++ L AR L+GDI Q+ RE T+ + GK L
Sbjct: 243 VEEFDA-VIIFVRTKTATMELSEKL-SARGYAVEPLNGDIPQNSRERTVERLKRGKIDIL 300
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSK 472
VAT+V ARGLD+ V +I + P D E+Y+HR GRTGRAG G A++ R K +
Sbjct: 301 VATDVVARGLDVERVSHVINYDVPYDTESYVHRIGRTGRAGRQGDAILFISHREKRMLFS 360
Query: 473 IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGL---- 528
IER + + + P +I+Q++++ + FKS+ E + +S +
Sbjct: 361 IERATRQSIDPMPIP---------------SISQLNETRLSRFKSSVIEAIGDSSIETLI 405
Query: 529 -----------SAAELLAKALAK 540
+A E++ ALAK
Sbjct: 406 PIVESIQAETEAAPEVIMAALAK 428
>gi|429107253|ref|ZP_19169122.1| Cold-shock DEAD-box protein A [Cronobacter malonaticus 681]
gi|426293976|emb|CCJ95235.1| Cold-shock DEAD-box protein A [Cronobacter malonaticus 681]
Length = 542
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 164/451 (36%), Positives = 239/451 (52%), Gaps = 62/451 (13%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L ++
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLHNIDETL 72
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E D G+ LYGG Y Q L
Sbjct: 73 ----------RAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS+LK VLDEADEMLRMGF+EDVE I+ ++ +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVETIMAQIPAEH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y S G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWSVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVE--AAETITQVSD 509
AG G A++ + R+ + + IER + + P A++ +E AA+ Q+
Sbjct: 339 AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPN-AELLGKRRLEKFAAKVQQQLES 397
Query: 510 SVIPAFKSAAEELLNNSGLSAAELLAKALAK 540
S + +++ +L L E LA AL K
Sbjct: 398 SDLDQYRALLTKLQPEGELD-VETLAAALLK 427
>gi|50292931|ref|XP_448898.1| hypothetical protein [Candida glabrata CBS 138]
gi|74664283|sp|Q8TFK8.1|DED1_CANGA RecName: Full=ATP-dependent RNA helicase DED1
gi|20086311|gb|AAM08102.1| DED1p [Candida glabrata]
gi|49528211|emb|CAG61868.1| unnamed protein product [Candida glabrata]
Length = 617
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 149/383 (38%), Positives = 213/383 (55%), Gaps = 26/383 (6%)
Query: 108 PNAVSRFRISVPLR----EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
P A++ F S PL E +K P+Q + +V G DL+ A+TG GKT F
Sbjct: 141 PEAITEF-TSPPLDSLLLENIKLARFTKPTPVQKYSVPIVSKGRDLMACAQTGSGKTGGF 199
Query: 164 VLPIL-ESLTNGPTKASKKTGYGRA----PSVLVLLPTRELAKQVHEDFDVYGGAVGLTS 218
+ P+L ES GP + + GY P+ +V+ PTRELA Q+ ++ + +
Sbjct: 200 LFPVLSESFLTGPAEKAANDGYSYQRKAFPTAVVMAPTRELATQIFDEAKKFCYRSWVKP 259
Query: 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF 278
C +YGGAP Q ++ G D+++ TPGR+ D +ERG + LS++K+ VLDEAD ML MGF
Sbjct: 260 CVVYGGAPIGNQMREMDHGCDLLVATPGRLNDLLERGKVSLSNVKYLVLDEADRMLDMGF 319
Query: 279 VEDVELILGKVEDAN-----KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKA 333
+ I VED + + QTL+FSAT P ++H++ FL I L
Sbjct: 320 EPQIRHI---VEDCDMPPTGERQTLMFSATFPHDIQHLARDFLHD---YIFLSVGRVGST 373
Query: 334 STNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARAL 389
S N+ +L + ++ + D++ S+ T+IF ETK A QL D L A A+
Sbjct: 374 SENITQRILYVENRDKNSALLDLLAA-SNDNLTLIFVETKRMADQLTDFLIMQNFSATAI 432
Query: 390 HGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 449
HGD Q++RE LA FRSG+ LVAT VAARGLDI +V +I + P DV+ Y+HR GR
Sbjct: 433 HGDRSQAERERALAAFRSGRANILVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGR 492
Query: 450 TGRAGNTGVAVMLYDPRKSSVSK 472
TGRAGNTGVA ++ +++ K
Sbjct: 493 TGRAGNTGVATAFFNRDNNNIVK 515
>gi|389842508|ref|YP_006344592.1| ATP-dependent RNA helicase DeaD [Cronobacter sakazakii ES15]
gi|429118789|ref|ZP_19179536.1| Cold-shock DEAD-box protein A [Cronobacter sakazakii 680]
gi|387852984|gb|AFK01082.1| ATP-dependent RNA helicase DeaD [Cronobacter sakazakii ES15]
gi|426326694|emb|CCK10273.1| Cold-shock DEAD-box protein A [Cronobacter sakazakii 680]
Length = 635
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 164/451 (36%), Positives = 239/451 (52%), Gaps = 62/451 (13%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L ++
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLHNIDETL 72
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E D G+ LYGG Y Q L
Sbjct: 73 ----------RAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS+LK VLDEADEMLRMGF+EDVE I+ ++ +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVETIMAQIPAEH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y S G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWSVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVE--AAETITQVSD 509
AG G A++ + R+ + + IER + + P A++ +E AA+ Q+
Sbjct: 339 AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPN-AELLGKRRLEKFAAKVQQQLES 397
Query: 510 SVIPAFKSAAEELLNNSGLSAAELLAKALAK 540
S + +++ +L L E LA AL K
Sbjct: 398 SDLDQYRALLTKLQPEGELD-VETLAAALLK 427
>gi|388257453|ref|ZP_10134632.1| putative ATP-dependent RNA helicase DeaD [Cellvibrio sp. BR]
gi|387938620|gb|EIK45172.1| putative ATP-dependent RNA helicase DeaD [Cellvibrio sp. BR]
Length = 609
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 147/385 (38%), Positives = 215/385 (55%), Gaps = 22/385 (5%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ ++ G E PIQA ++L G D++G A+TG GKT AF LP+L +
Sbjct: 12 LSEPVMRAIQKVGYEQPSPIQAAAIPVLLAGGDILGMAQTGTGKTAAFALPLLSRID--- 68
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
TK ++ P +LVL PTRELA QV E F Y + G +YGG Q L
Sbjct: 69 TKQAE-------PQILVLAPTRELAIQVAEAFQKYASEIPGFHVLPIYGGQEMTTQLRSL 121
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
K+G VV+GTPGR+ DH+ RG+++L++LK VLDEADEMLRMGF++DVE IL
Sbjct: 122 KRGAHVVVGTPGRVMDHLRRGSLNLNNLKALVLDEADEMLRMGFIDDVEWILEHTPKTR- 180
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++H+ +L ++ I + ++ A N+ + S + + +
Sbjct: 181 -QTALFSATMPKEIRHVCNNYL-NNATEIKIASSQSTDA--NIEQVYWMVSGTNKLDALT 236
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKF 410
I+ G IIF TK + +LA+ L A AL+GD+ Q RE T+ ++ K
Sbjct: 237 RILEVEPFDG-MIIFVRTKTATVELAEKLEARGYSAAALNGDMNQQLRERTIERLKTNKL 295
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSS 469
++AT+VAARG+D+ V ++ + P D EAY+HR GRTGRAG +G A++ PR K
Sbjct: 296 DIVIATDVAARGIDVERVSHVVNYDIPYDSEAYVHRIGRTGRAGRSGKAILFVAPREKRL 355
Query: 470 VSKIERESGVKFEHISAPQPADIAK 494
+ IE+ + + P A + K
Sbjct: 356 LYTIEKATKKPITLMELPSGATVTK 380
>gi|365144135|ref|ZP_09348522.1| cold-shock DEAD box protein A [Klebsiella sp. 4_1_44FAA]
gi|363648601|gb|EHL87759.1| cold-shock DEAD box protein A [Klebsiella sp. 4_1_44FAA]
Length = 643
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 149/396 (37%), Positives = 216/396 (54%), Gaps = 58/396 (14%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +LDG D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 71 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++ +S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIHSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAP 487
AG G A++ + R+ + + IER + + P
Sbjct: 339 AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELP 374
>gi|134297916|ref|YP_001111412.1| DEAD/DEAH box helicase [Desulfotomaculum reducens MI-1]
gi|134050616|gb|ABO48587.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum reducens
MI-1]
Length = 460
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 145/372 (38%), Positives = 210/372 (56%), Gaps = 21/372 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L E L+ GI PIQ T ++L G D++ +A+TG GKTLAFVLPILE K
Sbjct: 13 LNELLRVYGITEPTPIQKQTIPILLSGKDVIAQAQTGTGKTLAFVLPILE-------KID 65
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
K Y +A L+L PTRELA Q+ + + +YGG Q +L+
Sbjct: 66 AKKSYIQA---LILTPTRELALQITTEVKKLASKMDANVLAVYGGQDVERQNKRLQGNTH 122
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
+VI TPGR+ DH+ RG I L+ + VLDEAD+ML MGF+ +VE I+ + + K QT+L
Sbjct: 123 IVIATPGRLLDHLGRGTIRLTGVSMLVLDEADQMLHMGFLNEVEKIIHQT--SAKRQTML 180
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSAT+P+ ++ +S K+++ K +D+ + I + + + + + ++
Sbjct: 181 FSATMPAEIRALSVKYMR---KPMDIHVRGTGITLEKTKQIAVETTDRTKQETLRKLLDE 237
Query: 360 YSSGGRTIIFTETKESASQLADLL----PGARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
Y IIF TK AS L ++L + LHGD+ Q++RE + FR K LVA
Sbjct: 238 YQPY-LGIIFCRTKRRASALNEMLLAHGYNSDELHGDLSQAKREQVMKRFREAKLQILVA 296
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIE 474
T+VAARGLD+ V + + P+DVE+YIHR GRTGRAG+TG+AV PR ++ + IE
Sbjct: 297 TDVAARGLDVEGVTHVFNYDIPQDVESYIHRIGRTGRAGDTGLAVTFVSPRDRTDLQMIE 356
Query: 475 RESGVKFEHISA 486
+ G+K E SA
Sbjct: 357 KGIGMKLEKRSA 368
>gi|387769316|ref|ZP_10125580.1| cold-shock DEAD-box protein A [Pasteurella bettyae CCUG 2042]
gi|386906949|gb|EIJ71670.1| cold-shock DEAD-box protein A [Pasteurella bettyae CCUG 2042]
Length = 632
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 152/384 (39%), Positives = 211/384 (54%), Gaps = 58/384 (15%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQ +L+G D++G A+TG GKT AF LP+L + R
Sbjct: 25 GFETPSPIQQACIPHLLEGRDVLGMAQTGSGKTAAFSLPLLAQVDI----------EQRH 74
Query: 188 PSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P +LV+ PTRELA QV + + + GA G+ + LYGG Y Q L++G VV+GTPG
Sbjct: 75 PQMLVMAPTRELAIQVADACEQFTKGAKGIHTVTLYGGQRYDIQLRALRQGAQVVVGTPG 134
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
RI DHI RG +DLS LKF VLDEADEMLRMGF++DVE ++ ++ + K QT LFSAT+P
Sbjct: 135 RILDHIRRGTLDLSELKFIVLDEADEMLRMGFIDDVETVMAELPE--KHQTALFSATMPE 192
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR--CYSSGG 364
++ I+ +F+ +D + + + ++ TN PDI + Y G
Sbjct: 193 PIRRITKRFM-TDPQEVKIQSTQR----TN-----------------PDIAQSCWYVRGF 230
Query: 365 R----------------TIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAG 404
R IIFT TK + +LL A AL+GD+ Q RE TL
Sbjct: 231 RKNDALLRFLEVEDFDAAIIFTRTKTGTLDITELLEKHGFRAAALNGDMTQQLREQTLDR 290
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
R+G LVAT+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG +G A++ +
Sbjct: 291 LRNGSLDILVATDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRSGSAILFVE 350
Query: 465 PR-KSSVSKIERESGVKFEHISAP 487
PR + + IER E + P
Sbjct: 351 PRERRLLGNIERLMKKPIEEVEVP 374
>gi|441510375|ref|ZP_20992282.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia aichiensis NBRC
108223]
gi|441445510|dbj|GAC50243.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia aichiensis NBRC
108223]
Length = 585
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 148/393 (37%), Positives = 220/393 (55%), Gaps = 22/393 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+R + G E+ PIQA T +++G D+VG A+TG GKT AF +PIL S
Sbjct: 23 VRNAIADVGYETPSPIQAATIPPLMEGRDVVGLAQTGTGKTAAFAIPIL----------S 72
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGI 238
+ R P L+L PTRELA QV E F Y + + +YGG Y Q LK+G
Sbjct: 73 RIDPQIRRPQALILAPTRELALQVSEAFGKYSAHMPDVRVLPIYGGQSYGVQLAGLKRGA 132
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
V++GTPGR+ DH+++G +D+S L F VLDEADEML MGF EDVE IL + D +V
Sbjct: 133 QVIVGTPGRVIDHLDKGTLDISQLDFLVLDEADEMLTMGFAEDVERILAETPDDKQVA-- 190
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+PS ++ ++ ++L D + I + K + N+ L S + + +
Sbjct: 191 LFSATMPSAIRRLAQRYLH-DAQEITV--KAKTATAQNITQRYLQVSHQRKLDALTRFLE 247
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ I+F TK++ +LA+ L A A++GD+ Q+QRE T+ ++G LV
Sbjct: 248 VETFDA-MIVFVRTKQATEELAEKLRSRGFSAVAINGDMVQAQRERTINQLKAGGIDILV 306
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-I 473
AT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + + I
Sbjct: 307 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALLFVSPRERHLLRAI 366
Query: 474 ERESGVKFEHISAPQPADIAKAAGVEAAETITQ 506
ER + I P D+ A++IT+
Sbjct: 367 ERATRQPLTEIDLPSVDDVNAQRVSRFADSITE 399
>gi|401676931|ref|ZP_10808912.1| ATP-dependent RNA helicase CsdA [Enterobacter sp. SST3]
gi|400215840|gb|EJO46745.1| ATP-dependent RNA helicase CsdA [Enterobacter sp. SST3]
Length = 631
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 149/384 (38%), Positives = 213/384 (55%), Gaps = 58/384 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLNNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 71 DL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ D +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPDGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITKRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y S G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWSVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AGNTGVAVMLYDPRKSSVSK-IER 475
AG G A++ + R+ + + IER
Sbjct: 339 AGRAGRALLFVENRERRLLRNIER 362
>gi|367030829|ref|XP_003664698.1| hypothetical protein MYCTH_2307795 [Myceliophthora thermophila ATCC
42464]
gi|347011968|gb|AEO59453.1| hypothetical protein MYCTH_2307795 [Myceliophthora thermophila ATCC
42464]
Length = 580
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 140/354 (39%), Positives = 200/354 (56%), Gaps = 26/354 (7%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQA ++ L G D++G A TG GKT+AF LP +E+L + P K G +V+
Sbjct: 219 PIQAASWPFALSGRDVIGIAETGSGKTMAFSLPCVEALASRPRPKHSKGGKTACARAVVV 278
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKK--GIDVVIGTPGRIKDH 251
PTRELA Q H VGL++ CLYGGA Q L+K G D+++ TPGR+KD
Sbjct: 279 SPTRELAMQTHAAMSSLASLVGLSAVCLYGGASKDEQRALLRKNSGADIIVATPGRLKDF 338
Query: 252 IERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHI 311
+ G + LS + F VLDEAD ML GF ED++LILG K QTL+F+AT P V+ +
Sbjct: 339 LSEGCVSLSDVMFAVLDEADRMLDKGFEEDIKLILGSCPPREKRQTLMFTATWPMSVRGL 398
Query: 312 STKFLKSDKKTIDLVGNE--------------KMKASTNVRHIVLPCSSSARSQVIPDII 357
+ F+ K +GN +++A+T + V +A+ Q + +++
Sbjct: 399 AEGFMVDPVKVT--IGNRTRAGDENGGGSGSTELQANTRIEQKVEVVDPNAKEQRLLELL 456
Query: 358 RCYSSGG----RTIIFTETKESASQLADLL--PGAR--ALHGDIQQSQREVTLAGFRSGK 409
R G R ++F K+ A ++ L G R ++HGD++Q QR +L F+SGK
Sbjct: 457 REAQKGSGKNDRILVFCLYKKEAVRVEQFLERKGIRVASIHGDLRQDQRTRSLEAFKSGK 516
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
LVAT+VAARGLDI +V+L+I P +E Y+HR GRTGRAG +G A+ L+
Sbjct: 517 TTVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGRSGKAITLF 570
>gi|357401596|ref|YP_004913521.1| hypothetical protein SCAT_4022 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|337768005|emb|CCB76718.1| conserved protein of unknown function [Streptomyces cattleya NRRL
8057 = DSM 46488]
Length = 789
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 142/366 (38%), Positives = 206/366 (56%), Gaps = 21/366 (5%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L++ GI + FPIQ MT + L G+D++G+A+TG GKTL F LP+LE +T A +
Sbjct: 23 EALEAVGITTPFPIQEMTLPVALAGNDVIGQAKTGTGKTLGFGLPLLERVT---VAADVE 79
Query: 182 TGYGR-------APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
G R AP LV++PTREL QV D G + +YGG Y Q L
Sbjct: 80 AGRARPEELADGAPQALVVVPTRELCVQVTNDLLTAGKVRDVRVLAIYGGRAYEPQVEAL 139
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
KG+DVV+GTPGR+ D + + L S++ VLDEADEML +GF+ DVE I+ + K
Sbjct: 140 NKGVDVVVGTPGRLLDLAGQRKLALGSVRALVLDEADEMLDLGFLPDVEKIMEMLP--RK 197
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT+LFSAT+P V ++ +++ +++ N+ V S + +++
Sbjct: 198 RQTMLFSATMPGQVISLARRYMSQPTHIRATAPDDEGATVANITQHVFRAHSLDKVEMVS 257
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410
I++ G +IF TK +A+ +AD L A A+HGD+ Q RE L FR+GK
Sbjct: 258 RILQARGR-GLAMIFARTKRTAADVADQLSRRGFAAGAVHGDLGQGAREQALRAFRNGKV 316
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PR 466
LV T+VAARG+D++ V ++ + P D + Y+HR GRTGRAG +G A+ L D PR
Sbjct: 317 DVLVCTDVAARGIDVDGVTHVVNYQCPEDEKTYLHRVGRTGRAGASGTAITLVDWDDVPR 376
Query: 467 KSSVSK 472
++K
Sbjct: 377 WQLINK 382
>gi|164687595|ref|ZP_02211623.1| hypothetical protein CLOBAR_01236 [Clostridium bartlettii DSM
16795]
gi|164603369|gb|EDQ96834.1| DEAD/DEAH box helicase [Clostridium bartlettii DSM 16795]
Length = 541
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 150/402 (37%), Positives = 219/402 (54%), Gaps = 25/402 (6%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
IS ++ + G E PIQA + ++L G D++G+A+TG GKT AF +PILE +
Sbjct: 11 ISDEIKRSIAEIGFEEPSPIQAQSIPVILSGKDVIGQAQTGTGKTAAFSIPILEKVDPN- 69
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKL 234
+ +VL PTRELA QV ++ G G+ + +YGG P Q L
Sbjct: 70 ---------NKHLQAIVLCPTRELAIQVSKEIRKLGKFKSGIKTLPVYGGQPIDRQIKAL 120
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
K G+ VVIGTPGR+ DHI R + L +K VLDEADEML MGF ED+ELIL +
Sbjct: 121 KSGVQVVIGTPGRVIDHINRKTLKLDDVKMVVLDEADEMLDMGFREDIELILNQTPIER- 179
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT FSAT+P + + TK + + + I +V E N++ + + + +V+
Sbjct: 180 -QTTFFSATMPKEILEL-TKLYQHEPEIIKVVRKEL--TVPNIKQFYIETRRANKLEVLC 235
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKF 410
+I Y+ +++F TK + +L L A ALHGD++Q+QR++ + FR G
Sbjct: 236 RLIDVYNPK-LSVVFCNTKRGSDELVSELQARGYFADALHGDLKQTQRDIVMDKFRQGTI 294
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV-MLYDPRKSS 469
LVAT+VAARG+D++DV ++ + P+D E Y+HR GRTGRAG GV+ +Y
Sbjct: 295 DILVATDVAARGIDVDDVDMVFNYDLPQDEEYYVHRIGRTGRAGREGVSFSFVYGKEMRK 354
Query: 470 VSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSV 511
+ IER + K S P AD+ + + A QV D+V
Sbjct: 355 MRDIERYTKCKLVKHSIPTIADVEEK---KVAAFFKQVKDTV 393
>gi|410082495|ref|XP_003958826.1| hypothetical protein KAFR_0H02820 [Kazachstania africana CBS 2517]
gi|372465415|emb|CCF59691.1| hypothetical protein KAFR_0H02820 [Kazachstania africana CBS 2517]
Length = 611
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 142/356 (39%), Positives = 201/356 (56%), Gaps = 27/356 (7%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKASKKT-------GYG 185
P+Q + +V DL+G A+TG GKT F+ PIL E NGP K+ GY
Sbjct: 162 PVQKYSIPIVSKNRDLMGCAQTGSGKTGGFLFPILSEMFINGPLNVPDKSRNHYMRKGY- 220
Query: 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTP 245
P+ LVL PTRELA Q+ E+ + + C +YGGAP Q +L +G D+++ TP
Sbjct: 221 --PTALVLAPTRELATQIFEESRKFTYRSWVRPCVVYGGAPIGNQMRELDRGCDLLVATP 278
Query: 246 GRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN-----KVQTLLF 300
GR+ D +ERG I L ++++ +LDEAD ML MGF + I VED + QTL+F
Sbjct: 279 GRLNDLLERGKISLMNVRYLILDEADRMLDMGFEPQIRHI---VEDCDMPEVQDRQTLMF 335
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT P ++H++ FLK+ + L S N+ ++ + + D++ Y
Sbjct: 336 SATFPRDIQHLARDFLKN---YVFLSVGRVGSTSENITQKIIMVEDMDKKSALLDLL-AY 391
Query: 361 SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
G T+IF ETK A QL D L A A+HGD Q +RE L F++G+ LVAT
Sbjct: 392 QHEGLTLIFVETKRMADQLTDFLIMQNFNATAIHGDRTQEERERALGAFKAGRADILVAT 451
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
VAARGLDI +V L+I + P D++ Y+HR GRTGRAGNTGVA+ ++ +++ K
Sbjct: 452 AVAARGLDIPNVTLVINFDLPSDIDDYVHRIGRTGRAGNTGVAISFFNSNNTNIVK 507
>gi|371777791|ref|ZP_09484113.1| dead/deah box helicase domain protein [Anaerophaga sp. HS1]
Length = 540
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 156/453 (34%), Positives = 245/453 (54%), Gaps = 40/453 (8%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDG-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASK 180
E L++ G ++ PIQ+ T +L+ +DLV A+TG GKT AF LPIL+ + K
Sbjct: 15 ESLETIGFKTPTPIQSKTIPYILESENDLVAMAQTGTGKTAAFGLPILQKINTENNKIQS 74
Query: 181 KTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDV 240
++L PTREL Q+ D + + + L+ +YGG P + Q LK+ +
Sbjct: 75 ----------IILCPTRELCLQITRDIERFSTNLPLSVVAVYGGEPINRQISALKRKCHM 124
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGR+ D I R +DLSS++F VLDEADEML+MGF ++++ IL E QTLLF
Sbjct: 125 VVGTPGRVNDLINRRILDLSSVRFLVLDEADEMLKMGFKDEMDAILA--ETPKTKQTLLF 182
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI------- 353
SAT+P ++ I+ K++ K I + N + + N+ H + S+S +
Sbjct: 183 SATIPPDIESIAGKYMNKPHK-ISVTHNNQ--TAENINHFYMVTSTSTAYPTLRRFADMH 239
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLL----PGARALHGDIQQSQREVTLAGFRSGK 409
PDI YS I+F T++ +A+ L A ALHG++ Q R+ + FR
Sbjct: 240 PDI---YS-----IVFCRTRQETKDIANKLIEDGYNADALHGELSQGLRDQVMGRFRKKH 291
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS 469
LVAT+VAARGLD+ND+ +I P + E Y+HRSGRTGRAG +GV+V + P++++
Sbjct: 292 LQILVATDVAARGLDVNDLTHVIHYHLPDETENYVHRSGRTGRAGKSGVSVAIISPKETN 351
Query: 470 -VSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIP--AFKSAAEELLNNS 526
+ +ER+ F I P ++ + V ET+ V + P + +E LN+
Sbjct: 352 KIKMLERKIKKSFTRIMVPGGMEVFQNRLVNYLETLKTVEPNSFPLDQYWDLVQEHLNH- 410
Query: 527 GLSAAELLAKALAKAVVSAFLFSSSSNSLSLTS 559
LS +L+ L++ + S++ L++++
Sbjct: 411 -LSKEDLIKAILSREFYRVYEDYSTAPDLNVSA 442
>gi|291616016|ref|YP_003518758.1| DeaD [Pantoea ananatis LMG 20103]
gi|291151046|gb|ADD75630.1| DeaD [Pantoea ananatis LMG 20103]
Length = 633
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 145/380 (38%), Positives = 218/380 (57%), Gaps = 27/380 (7%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
++ L E L G PIQA +L G D++G A+TG GKT AF LP+L ++ P
Sbjct: 16 LNAELLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNID--P 73
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
T +AP +LVL PTRELA QV E + + GL LYGG Y Q L
Sbjct: 74 TV--------KAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLRAL 125
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G VV+GTPGR+ DH++RG +DLS+L+ VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 126 RQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 184
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R + +A +
Sbjct: 185 -QTALFSATMPEAIRRITKRFMKDPQEV-------RIQSSMTTRPDISQSYWTAYGRKTD 236
Query: 355 DIIRCYSSG--GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408
++R + IIF TK + ++A+ L + AL+GD+ Q+ RE TL + G
Sbjct: 237 ALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDG 296
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS 468
+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG G A++ + R+
Sbjct: 297 RLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRER 356
Query: 469 SVSK-IERESGVKFEHISAP 487
+ + IER + + P
Sbjct: 357 RLLRNIERTMKLTIPEVELP 376
>gi|183600372|ref|ZP_02961865.1| hypothetical protein PROSTU_03938 [Providencia stuartii ATCC 25827]
gi|386743799|ref|YP_006216978.1| ATP-dependent RNA helicase DeaD [Providencia stuartii MRSN 2154]
gi|188020163|gb|EDU58203.1| DEAD/DEAH box helicase [Providencia stuartii ATCC 25827]
gi|384480492|gb|AFH94287.1| ATP-dependent RNA helicase DeaD [Providencia stuartii MRSN 2154]
Length = 622
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 154/417 (36%), Positives = 227/417 (54%), Gaps = 62/417 (14%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S + L G E PIQ +++DG+D++G A+TG GKT AF LP+L ++ P
Sbjct: 14 LSASILTALNDLGYEKPSPIQKQCIPLLMDGNDVLGMAQTGSGKTAAFSLPLLHNID--P 71
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHE---DFDVYGGAVGLTSCCLYGGAPYHAQEF 232
+AP +LVL PTRELA QV E DF + V + LYGG Y Q
Sbjct: 72 DL--------KAPQILVLAPTRELAVQVAEAMGDFSKHMSRVNV--VALYGGQRYDVQLR 121
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF+EDVE I+ ++
Sbjct: 122 ALRQGPQVVVGTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVENIMSQIPAE 181
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QT LFSAT+P ++ I+ +F+K K+ +++AS R
Sbjct: 182 H--QTALFSATMPEPIRRITRRFMKEPKEI-------RIQASITTR-------------- 218
Query: 353 IPDIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALH 390
PDI + Y + G R IIF TK + ++A+ L + AL+
Sbjct: 219 -PDIAQSYWTVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALN 277
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
GD+ Q+ RE TL + G+ L+AT+VAARGLD++ + L++ + P D E+Y+HR GRT
Sbjct: 278 GDMNQALREQTLERLKDGRLDILIATDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRT 337
Query: 451 GRAGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQ 506
GRAG G A++ + R+ + + +ER + + P +++ + AE I Q
Sbjct: 338 GRAGRAGRALLFVENRERRLLRNVERTMKLTIPEVELPDSQLLSERRQAKFAEKIQQ 394
>gi|428932320|ref|ZP_19005900.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae JHCK1]
gi|426307206|gb|EKV69292.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae JHCK1]
Length = 643
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 147/396 (37%), Positives = 215/396 (54%), Gaps = 58/396 (14%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +LDG D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 71 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSSG------------------GRTIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTAYGMSKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAP 487
AG G A++ + R+ + + IER + + P
Sbjct: 339 AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELP 374
>gi|157376496|ref|YP_001475096.1| DEAD/DEAH box helicase [Shewanella sediminis HAW-EB3]
gi|157318870|gb|ABV37968.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 419
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 140/342 (40%), Positives = 204/342 (59%), Gaps = 12/342 (3%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS--KKTGYG 185
G S PIQA ++L G D++ A+TG GKT AF LPIL+ L+ + S K+T
Sbjct: 20 GYSSPTPIQAHAIPVILAGQDIMAGAQTGTGKTAAFALPILQKLSECDVELSDTKQTVSL 79
Query: 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTP 245
+ LVL PTRELA QV++ F YG GL + +YGG AQ LK G+D+++ TP
Sbjct: 80 KPVRALVLTPTRELALQVNQSFAKYGKDSGLNTAIVYGGVSIDAQADALKAGVDILVATP 139
Query: 246 GRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305
GR+ DH+ RG++ L L F V DEAD ML MGF +++ IL +V +K QTLLFSAT
Sbjct: 140 GRLLDHLRRGSLTLKQLNFLVFDEADRMLDMGFKDEINAILKQVP--SKRQTLLFSATFD 197
Query: 306 SWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGR 365
V +S K L+ D K I++ +++ + V +V + +S++I +++ +
Sbjct: 198 PSVFALS-KRLQQDPKLIEV--DKRNTLAAKVEQVVYAVDADRKSELICHLVKS-KLWQQ 253
Query: 366 TIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421
+IF+ K+ A +A + A+A HGD+ Q+ RE L F+ G+ LVAT+VAAR
Sbjct: 254 VLIFSRKKQGADNIAAKMVKAGIKAQAFHGDLSQAVREKALQQFKQGEIQVLVATDVAAR 313
Query: 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
GLD+ ++++++ E P E YIHR GRTGRAGN G+A+ LY
Sbjct: 314 GLDVEELKVVVNYELPFIAEDYIHRIGRTGRAGNAGLAITLY 355
>gi|392396642|ref|YP_006433243.1| DNA/RNA helicase [Flexibacter litoralis DSM 6794]
gi|390527720|gb|AFM03450.1| DNA/RNA helicase, superfamily II [Flexibacter litoralis DSM 6794]
Length = 617
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 157/452 (34%), Positives = 248/452 (54%), Gaps = 47/452 (10%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY--- 184
G ES PIQA +L+G D++G+A+TG GKT AF +P++E + KA++ + +
Sbjct: 41 GFESPSPIQAEAIPHLLEGKDVIGQAQTGTGKTAAFGIPLIERII----KANENSEFDRN 96
Query: 185 GRAPSVLVLLPTRELAKQVHEDF--------DVYGGAVGLTSCCLYGGAPYHAQEFKLKK 236
R P ++L PTRELA QV + D++ AV YGG Q L++
Sbjct: 97 SRLPKGIILCPTRELAVQVAGELEKLAKFRKDIFVTAV-------YGGESIEKQIRNLRR 149
Query: 237 GIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQ 296
G+ +V+GTPGR DHI+RG + L + +LDEADEML MGF ED+ELIL ++ + Q
Sbjct: 150 GVQIVVGTPGRTIDHIKRGTLKLEEITNIILDEADEMLNMGFKEDIELILQQITTEH--Q 207
Query: 297 TLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDI 356
T+LFSAT+P + I+ K+ S + + ++ E S N+ LP + + ++ V+ +
Sbjct: 208 TVLFSATMPKPILQIAKKYQNS-PEIVKVISKEL--TSDNIEQSFLPINPNYKTDVLVRL 264
Query: 357 IRCYSSGGRTIIFTETKESASQLADLL----PGARALHGDIQQSQREVTLAGFRSGKFMT 412
+ Y+ +IF TK+ ++A+ L A ALHGD+ Q QR + + FR G+
Sbjct: 265 L-AYNGWESMLIFCNTKQRTDEVAETLIQKGYAAEALHGDLAQHQRNLVMNKFRHGRVQI 323
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS--SV 470
LVAT+VAARG+D+++V+ +I + P D E Y+HR GRTGRAGN GV++ R+ +
Sbjct: 324 LVATDVAARGIDVDNVEAVINYDVPLDPEYYVHRIGRTGRAGNKGVSITFISGRREVYRL 383
Query: 471 SKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSA 530
+ IER S + + P ++ + E + + + AEEL + + L
Sbjct: 384 NDIERYSKSRIPQGTIPTQQEVLAKKQLRFMENLKATIND-----EKKAEELESYTAL-- 436
Query: 531 AELL------AKALAKAVVSAFLFSSSSNSLS 556
E+L +K +A AV+S L + ++ L+
Sbjct: 437 IEMLEIEGITSKQVAAAVLSLQLSNKPTDRLT 468
>gi|378768793|ref|YP_005197267.1| ATP-dependent RNA helicase DeaD [Pantoea ananatis LMG 5342]
gi|386018183|ref|YP_005936486.1| cold-shock DEAD box protein A DeaD [Pantoea ananatis AJ13355]
gi|386080899|ref|YP_005994424.1| cold-shock DEAD box protein A [Pantoea ananatis PA13]
gi|327396268|dbj|BAK13690.1| cold-shock DEAD box protein A DeaD [Pantoea ananatis AJ13355]
gi|354990080|gb|AER34204.1| cold-shock DEAD box protein A [Pantoea ananatis PA13]
gi|365188280|emb|CCF11230.1| ATP-dependent RNA helicase DeaD [Pantoea ananatis LMG 5342]
Length = 630
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 145/380 (38%), Positives = 218/380 (57%), Gaps = 27/380 (7%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
++ L E L G PIQA +L G D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LNAELLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
T +AP +LVL PTRELA QV E + + GL LYGG Y Q L
Sbjct: 71 TV--------KAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G VV+GTPGR+ DH++RG +DLS+L+ VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R + +A +
Sbjct: 182 -QTALFSATMPEAIRRITKRFMKDPQEV-------RIQSSMTTRPDISQSYWTAYGRKTD 233
Query: 355 DIIRCYSSG--GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408
++R + IIF TK + ++A+ L + AL+GD+ Q+ RE TL + G
Sbjct: 234 ALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDG 293
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS 468
+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG G A++ + R+
Sbjct: 294 RLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRER 353
Query: 469 SVSK-IERESGVKFEHISAP 487
+ + IER + + P
Sbjct: 354 RLLRNIERTMKLTIPEVELP 373
>gi|257056836|ref|YP_003134668.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
gi|256586708|gb|ACU97841.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
Length = 570
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 151/395 (38%), Positives = 215/395 (54%), Gaps = 17/395 (4%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P S + L + L G E PIQ +LDG D+VG+A TG GKT AF LP+
Sbjct: 15 PTGFSELGLRPELLQALAELGYEEPTPIQRAAIPPLLDGCDVVGQAATGTGKTAAFALPV 74
Query: 168 LESLTNGPT-KASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226
L + +G + + G APS +VL+PTRELA QV E YG +G+ +YGG
Sbjct: 75 LHRIRDGERGERGARAQRGAAPSAVVLVPTRELAAQVCEAMRRYGRRLGVRVLPVYGGQS 134
Query: 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286
Q L++G+DVV+ TPGR DH+ RG++DLS+L+ VLDEADEML MGF ED++ IL
Sbjct: 135 MSRQLRALEEGVDVVVATPGRALDHLSRGSLDLSALRMVVLDEADEMLDMGFAEDIDTIL 194
Query: 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAS----TNVRHIVL 342
+ D QT+LFSAT+P + + ++L+ D + I+L E + T ++V
Sbjct: 195 ERTPDDR--QTMLFSATMPPRIAGLVRRYLR-DPRRIELSRAESLDGDAASITQTAYVVP 251
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQR 398
A + DI + T++F T+E +L + + G A ALHG + Q QR
Sbjct: 252 RGHKPAALGRVLDI----ETPEATVVFCRTREEVDRLTETMNGRGYRAEALHGGMDQHQR 307
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
+ R+G +VAT+VAARGLDI+ + ++ + P E Y+HR GR GRAG G
Sbjct: 308 NRVVGRLRTGTADLVVATDVAARGLDIDQLTHVVNYDVPSAPEVYVHRIGRVGRAGRQGS 367
Query: 459 AVMLYDPRKSSVSK-IERESGVKFEHISAPQPADI 492
A+ L +P + + K IER +G P AD+
Sbjct: 368 AITLAEPGEHRMIKAIERVTGQPVPIRKLPTVADL 402
>gi|21672635|ref|NP_660702.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25090073|sp|Q8K9H6.1|DEAD_BUCAP RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
Full=ATP-dependent RNA helicase DeaD homolog
gi|21623269|gb|AAM67913.1| ATP-dependent RNA helicase DEAD [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 601
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 141/363 (38%), Positives = 212/363 (58%), Gaps = 27/363 (7%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQA ++L+G D++G A+TG GKT AF LP+L +L +AP +LVL
Sbjct: 31 PIQAACIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLNINL----------KAPQILVL 80
Query: 194 LPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI 252
PTRELA QV E F D +G+ LYGG Y Q L++G +V+GTPGR+ DH+
Sbjct: 81 APTRELAVQVAEAFSDFSKYIMGIHVLPLYGGQRYEVQLRALRQGPQIVVGTPGRLLDHL 140
Query: 253 ERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 312
+RG ++LS+L VLDEADEMLRMGF+EDVE I+ ++ + QT LFSAT+P ++ IS
Sbjct: 141 KRGTLNLSNLYALVLDEADEMLRMGFIEDVETIMSQIPKEH--QTALFSATMPEAIRRIS 198
Query: 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY--SSGGRTIIFT 370
+F+K+ ++ K++++ R + + +IR TIIF
Sbjct: 199 KRFMKNPQEI-------KIQSNITTRPDIKQSYWMVYGRKTDALIRFLEVEDFSATIIFV 251
Query: 371 ETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426
+TK + ++++ L + AL+GD+ Q+ RE TL +SG+ L+AT+VAARGLD++
Sbjct: 252 KTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKSGRLDILIATDVAARGLDVD 311
Query: 427 DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKFEHIS 485
+ +I + P D E+Y+HR GRTGRAG G A++ + R+ + + IER +
Sbjct: 312 RISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTINQTIPEVQ 371
Query: 486 APQ 488
P+
Sbjct: 372 LPK 374
>gi|395492457|ref|ZP_10424036.1| putative helicase [Sphingomonas sp. PAMC 26617]
Length = 492
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 151/389 (38%), Positives = 217/389 (55%), Gaps = 22/389 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L+ + G PIQA +L G DLV A+TG GKT AFVLP+++ L G ++A
Sbjct: 12 LQRAVNESGYTEPTPIQASAIPSILMGKDLVAVAQTGTGKTAAFVLPMIDILGEGRSRA- 70
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
R P L+L PTRELA QV E+F+ YG L+ L GG Q L+KG+D
Sbjct: 71 ------RMPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLIGGVSMGDQTAALEKGVD 124
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
V+I TPGR+ D RG I L+ V+DEAD ML MGF+ D+E I K+ QTLL
Sbjct: 125 VLIATPGRLMDLFGRGKILLTGCSMLVIDEADRMLDMGFIPDIEEICTKLPKTR--QTLL 182
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSAT+P +K ++ KFL + KTI++ A+ N++ ++P +++ + + ++R
Sbjct: 183 FSATMPPPIKKLADKFL-DNPKTIEVA--RPATANVNIKQWLVPVTAAKKRDTLMKLLRS 239
Query: 360 --YSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQREVTLAGFRSGKFMTL 413
+G IIF+ K + +L L A +HGD++QSQR L F+ G+ L
Sbjct: 240 EDVQTG---IIFSNRKTTVRELNKALQRAGFASSEIHGDMEQSQRIAELDRFKKGEVKIL 296
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSK 472
VA++VAARG+DI V + + P + Y+HR GRTGRAG TG+A P + ++
Sbjct: 297 VASDVAARGIDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGATGIAFTFATPDDAENIQN 356
Query: 473 IERESGVKFEHISAPQPADIAKAAGVEAA 501
IE+ +G+K E + PA IA+ A V A
Sbjct: 357 IEKLTGLKIERYTTGDPAPIAEEAPVAEA 385
>gi|377566292|ref|ZP_09795553.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia sputi NBRC
100414]
gi|377526546|dbj|GAB40718.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia sputi NBRC
100414]
Length = 585
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 148/393 (37%), Positives = 219/393 (55%), Gaps = 22/393 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+R + G E+ PIQA T +++G D+VG A+TG GKT AF +PIL S
Sbjct: 23 VRNAIADVGYETPSPIQAATIPPLMEGRDVVGLAQTGTGKTAAFAIPIL----------S 72
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGI 238
+ R P L+L PTRELA QV E F Y + + +YGG Y Q LK+G
Sbjct: 73 RIDPQIRRPQALILAPTRELALQVAEAFGKYSAHMPDVRVLPIYGGQSYGVQLAGLKRGA 132
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
V++GTPGR+ DH+++G +D+S L F VLDEADEML MGF EDVE IL + D +V
Sbjct: 133 QVIVGTPGRVIDHLDKGTLDISQLDFLVLDEADEMLTMGFAEDVERILAETPDDKQVA-- 190
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+PS ++ ++ ++L D + I + K + N+ L S + + +
Sbjct: 191 LFSATMPSAIRRLAQRYLH-DAQEITV--KAKTATAQNITQRYLQVSHQRKLDALTRFLE 247
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ I+F TK + +LA+ L A A++GD+ Q+QRE T+ ++G LV
Sbjct: 248 VETFDA-MIVFVRTKSATEELAEKLRSRGFSAVAINGDMVQAQRERTINQLKAGGIDILV 306
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-I 473
AT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + + I
Sbjct: 307 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALLFVSPRERHLLRAI 366
Query: 474 ERESGVKFEHISAPQPADIAKAAGVEAAETITQ 506
ER + I P D+ A++IT+
Sbjct: 367 ERATRQPLTEIDLPSVDDVNAQRVARFADSITE 399
>gi|422015367|ref|ZP_16361966.1| ATP-dependent RNA helicase DeaD [Providencia burhodogranariea DSM
19968]
gi|414099532|gb|EKT61173.1| ATP-dependent RNA helicase DeaD [Providencia burhodogranariea DSM
19968]
Length = 653
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 152/398 (38%), Positives = 218/398 (54%), Gaps = 62/398 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S + L G E PIQ ++LDG+D++G A+TG GKT AF LP+L ++ P
Sbjct: 14 LSASILTALNDLGYEKPSPIQKQCIPLLLDGNDVLGMAQTGSGKTAAFGLPLLHNID--P 71
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHE---DFDVYGGAVGLTSCCLYGGAPYHAQEF 232
+AP +LVL PTRELA QV E DF + V + LYGG Y Q
Sbjct: 72 DL--------KAPQILVLAPTRELAVQVAEAMSDFSKHMSRVNV--VALYGGQRYDVQLR 121
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF+EDVE I+ ++
Sbjct: 122 ALRQGPQVVVGTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVENIMSQIPAQ 181
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QT LFSAT+P ++ I+ +F+K K+ +++AS R
Sbjct: 182 H--QTALFSATMPEPIRRITRRFMKDPKEI-------RIQASITTR-------------- 218
Query: 353 IPDIIRCYS--SGGR----------------TIIFTETKESASQLADLLP----GARALH 390
PDI + Y SG R IIF TK + ++A+ L + AL+
Sbjct: 219 -PDITQSYWTVSGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALN 277
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
GD+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRT
Sbjct: 278 GDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRT 337
Query: 451 GRAGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAP 487
GRAG G A++ + R+ + + +ER + + P
Sbjct: 338 GRAGRAGRALLFVENRERRLLRNVERTMKLTIPEVELP 375
>gi|163840630|ref|YP_001625035.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
gi|162954106|gb|ABY23621.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
Length = 631
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 153/405 (37%), Positives = 225/405 (55%), Gaps = 32/405 (7%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L ++GI++ FPIQA T L G D++GR RTG GKTLAF LP++ L A ++
Sbjct: 89 LDAQGIDAPFPIQAKTLPDSLGGRDVLGRGRTGSGKTLAFGLPLVARL------AEREAA 142
Query: 184 YGRAPSV---LVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDV 240
Y R P+ LVL PTRELA Q++ + A+GL + +YGG QE LK G+D+
Sbjct: 143 YMRKPNRPLGLVLAPTRELATQINATIEPLAKAMGLNTTVIYGGVSQQRQERALKAGVDI 202
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
VI PGR++D + + + L S++ VLDEAD M +GF+ V+ +L + Q LLF
Sbjct: 203 VIACPGRLEDLMRQKLVSLESVEITVLDEADHMADLGFLPVVKRLLDTTP--TQGQRLLF 260
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SATL + V I ++L + V K ST H++ + + Q+I +
Sbjct: 261 SATLDNGVDKIVQRYLS--QPVTHSVDEPKAAVSTMEHHVLAVADQNVKKQLI---VELA 315
Query: 361 SSGGRTIIFTETKESASQLADLLPGARA----LHGDIQQSQREVTLAGFRSGKFMTLVAT 416
+ GR ++F TK A +LA L A LHG++ Q+ R+ LA F SG LVAT
Sbjct: 316 AGTGRRVLFMRTKHHARKLAKTLTDAGIPAVDLHGNLSQNARDRNLAEFSSGDVRVLVAT 375
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP-RKSSVSKIER 475
+VAARG+ ++DV+L+I +PP +AY+HRSGRT RAG+ G V + P ++S V K+ R
Sbjct: 376 DVAARGVHVDDVELVIHVDPPTAHKAYLHRSGRTARAGSDGTVVTISLPEQQSDVKKLMR 435
Query: 476 ESGVK--FEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSA 518
+GV FE ++A P A+ + V+D + P ++A
Sbjct: 436 AAGVDVAFEKVTANSPL---------VAKLVGDVADKIDPRTRAA 471
>gi|89900953|ref|YP_523424.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
gi|89345690|gb|ABD69893.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
Length = 574
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 144/343 (41%), Positives = 201/343 (58%), Gaps = 18/343 (5%)
Query: 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG- 185
+G E+ PIQA VLDG DL+G A+TG GKT AFVLP+L L+ +K G G
Sbjct: 19 QGYETPTPIQAQAIPAVLDGHDLLGGAQTGTGKTAAFVLPMLHKLSQSEAARNKFGGIGI 78
Query: 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTP 245
RA LVL PTRELA QV E YG V LTS ++GG + Q ++KKG+D+++ TP
Sbjct: 79 RA---LVLTPTRELAAQVEESVQTYGKYVELTSTVIFGGVGMNPQISRVKKGVDILVATP 135
Query: 246 GRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305
GR+ D +++G +DLS ++ VLDEAD ML MGF+ DV+ +L V Q+LLFSAT
Sbjct: 136 GRLLDLLQQGVLDLSQVQILVLDEADRMLDMGFIHDVKKVLAVVPKDK--QSLLFSATFS 193
Query: 306 SWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII--RCYSSG 363
++ ++ LKS N ++ T + H P + ++ I+ R +S
Sbjct: 194 EEIRELAATLLKSPLTIQVTPRNTTVQRITQLIH---PVGRGKKKALLAHIVQERNWS-- 248
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
+ ++FT TK A+ +A+ L A ALHG+ Q+ R LAGF+SG LVAT++A
Sbjct: 249 -QVLVFTRTKFGANNVAEFLTKSGINAMALHGNKSQAARTQALAGFKSGDIRALVATDIA 307
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
ARG+DI+D+ ++ + P E Y+HR GRTGRAG G AV L
Sbjct: 308 ARGIDIDDLPHVVNYDIPNVCEDYVHRIGRTGRAGADGAAVNL 350
>gi|410081586|ref|XP_003958372.1| hypothetical protein KAFR_0G02030 [Kazachstania africana CBS 2517]
gi|372464960|emb|CCF59237.1| hypothetical protein KAFR_0G02030 [Kazachstania africana CBS 2517]
Length = 606
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 149/381 (39%), Positives = 213/381 (55%), Gaps = 22/381 (5%)
Query: 108 PNAVSRFRISVP-----LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLA 162
P A++ F + P L E +K P+Q + +V +G DL+ A+TG GKT
Sbjct: 134 PEAITEF--TAPTLEGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGG 191
Query: 163 FVLPIL-ESLTNGPTKASKKTG--YGR--APSVLVLLPTRELAKQVHEDFDVYGGAVGLT 217
F+ P+L ES NGPT + +G Y R P+ +++ PTREL Q+ ++ + +
Sbjct: 192 FLFPVLSESFKNGPTPLPENSGSHYQRKAYPTAVIMAPTRELVSQIFDEAKKFTYRSWVK 251
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
C +YGGAP Q ++ +G D+++ TPGR+ D +ERG I L+++K+ VLDEAD ML MG
Sbjct: 252 PCVVYGGAPIANQMREMDRGCDLLVATPGRLSDLLERGKISLANVKYLVLDEADRMLDMG 311
Query: 278 FVEDVELILGKVE--DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335
F + I+ + + QTL+FSAT P+ ++H++ FL I L S
Sbjct: 312 FEPQIRHIVEGCDMTPVGERQTLMFSATFPADIQHLARDFLSD---YIFLSVGRVGSTSE 368
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHG 391
N+ VL + + D++ S G T+IF ETK A QL D L A A+HG
Sbjct: 369 NITQRVLYVEDEDKKSALLDLLAA-SDEGLTLIFVETKRLADQLTDFLIMQNFRATAIHG 427
Query: 392 DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451
D QS+RE LA FRSG LVAT VAARGLDI +V +I + P D++ Y+HR GRTG
Sbjct: 428 DRTQSERERALAAFRSGAANLLVATAVAARGLDIPNVTHVINFDLPSDIDDYVHRIGRTG 487
Query: 452 RAGNTGVAVMLYDPRKSSVSK 472
RAGNTGVA ++ S+V +
Sbjct: 488 RAGNTGVATAFFNGDNSNVVR 508
>gi|169831556|ref|YP_001717538.1| DEAD/DEAH box helicase [Candidatus Desulforudis audaxviator MP104C]
gi|169638400|gb|ACA59906.1| DEAD/DEAH box helicase domain protein [Candidatus Desulforudis
audaxviator MP104C]
Length = 533
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 143/370 (38%), Positives = 211/370 (57%), Gaps = 21/370 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E PIQ T +LDG DLVG+A+TG GKT AF +P+L L + G+
Sbjct: 27 GFEEPSPIQLQTIPQLLDGRDLVGQAQTGTGKTAAFAIPLLMRL-------QARRGW--- 76
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGR 247
P VLV+ PTRELA QV E+F G +YGG Q L++G+DVV+GTPGR
Sbjct: 77 PQVLVMTPTRELAIQVAEEFARVGRYTNTRVLPVYGGQSIGRQIKTLQRGVDVVVGTPGR 136
Query: 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSW 307
+ DH+ R + L L+ VLDEADEML MGF++D+E IL + QTLLFSAT+P
Sbjct: 137 VLDHLNRKTLRLEQLQAVVLDEADEMLDMGFIDDIESILNATPPSR--QTLLFSATIPGP 194
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTI 367
+ ++ K++++ + + N + A+ ++ + + + + I+ + R I
Sbjct: 195 IARLAEKYMRT---PVHVSINPEYVAAPDIWQVYYELRNIDHLEALCRILDA-EAVERAI 250
Query: 368 IFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423
IF TK +LA+ L A +HGD++Q+QR + FR G+ LVAT+VAARG+
Sbjct: 251 IFCRTKRRVDELAEALRSRGYSADHIHGDLEQNQRNRVMGAFREGEIDLLVATDVAARGI 310
Query: 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKFE 482
D+ ++ +I + P+D E+Y+HR GRTGRAG TG A+ L P++ + + I+R V+ E
Sbjct: 311 DVQNISHVINYDCPQDPESYVHRIGRTGRAGRTGTAITLVYPKELPLLRTIQRLVKVRIE 370
Query: 483 HISAPQPADI 492
P AD+
Sbjct: 371 RHPIPSLADV 380
>gi|379710489|ref|YP_005265694.1| putative ATP-dependent RNA helicase (fragment) [Nocardia
cyriacigeorgica GUH-2]
gi|374847988|emb|CCF65060.1| putative ATP-dependent RNA helicase (fragment) [Nocardia
cyriacigeorgica GUH-2]
Length = 607
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 150/380 (39%), Positives = 213/380 (56%), Gaps = 26/380 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQ +T + L G DL+G+ARTG GKT F +P+L + T S T
Sbjct: 50 LGEMGIERTFAIQELTLPLALAGEDLIGQARTGMGKTFGFGVPLLHRIA---TAESGTTP 106
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFD-----VYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
P LV++PTREL QV +D + + L +YGG PY AQ L+ G+
Sbjct: 107 LDGTPRALVIVPTRELCLQVTKDLENASKYLTNHQGPLKVVSIYGGRPYEAQIEALRAGV 166
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
DVV+GTPGR+ D + ++ L + VLDEADEML +GF+ D+E ILG V D K QT+
Sbjct: 167 DVVVGTPGRLLDLANQQHLILGKVGVLVLDEADEMLDLGFLPDIERILGMVPD--KRQTM 224
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR--HIVLPCSSSARSQVIPDI 356
LFSAT+P + ++ FL + + E ++ + R + + +S+++ +
Sbjct: 225 LFSATMPGPIITLARTFLT---RPTHIRAEEPHDSAVHDRTAQFIYRAHALDKSELVARV 281
Query: 357 IRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMT 412
++ G T+IFT TK +A ++AD L A+HGD+ Q RE LA FR G
Sbjct: 282 LQAEGRGA-TMIFTRTKRTAQKVADDLAERGFAVGAVHGDLGQIAREKALAKFRKGTIDV 340
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
LVAT+VAARG+DI+DV +I + P D + Y+HR GRTGRAG TGVAV L D +
Sbjct: 341 LVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGVAVTLID-----WDE 395
Query: 473 IERESGV-KFEHISAPQPAD 491
+ R +G+ K + P+P +
Sbjct: 396 LNRWAGIDKALGLGIPEPVE 415
>gi|291302062|ref|YP_003513340.1| DEAD/DEAH box helicase [Stackebrandtia nassauensis DSM 44728]
gi|290571282|gb|ADD44247.1| DEAD/DEAH box helicase domain protein [Stackebrandtia nassauensis
DSM 44728]
Length = 557
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 138/343 (40%), Positives = 195/343 (56%), Gaps = 14/343 (4%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GI F IQ + + G+D++GRA TG GKTL F +P+LE++T+ A +
Sbjct: 43 LSEIGITQAFAIQEYAIPIAMRGNDIIGRAPTGTGKTLGFGVPLLETVTSAAEGADGR-- 100
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
P LV++PTREL QV D + G G+ +YGG Y Q L+ G+++V+G
Sbjct: 101 ----PQALVVVPTRELGLQVSRDIEAAGKTRGIRVLPIYGGRAYEPQLEALRTGVEIVVG 156
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D ++ ++ L ++ VLDEAD ML +GF EDVE +L + + + QT+LFSAT
Sbjct: 157 TPGRLLDLLKAKHLKLGAVHTAVLDEADRMLDLGFAEDVEKLLAALPE--QRQTMLFSAT 214
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P + +S KFLK V + S + + S + +V+ I++ G
Sbjct: 215 MPDAIVSLSRKFLKQPMTIHAEVATDNAP-SAQTKQLAYLTHSLNKIEVLARILQAKDRG 273
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
TI+F+ TK ++AD L A+HGD+ Q+ RE L FRSGK LVAT+VA
Sbjct: 274 -LTIVFSRTKRHTQRVADDLEFRGFAVAAVHGDLGQNARERALRAFRSGKIDVLVATDVA 332
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
ARGLD+ DV +I + P D E Y+HR GRTGRAG TGVAV
Sbjct: 333 ARGLDVRDVTHVINYDSPEDAETYVHRIGRTGRAGATGVAVTF 375
>gi|126179703|ref|YP_001047668.1| DEAD/DEAH box helicase domain-containing protein [Methanoculleus
marisnigri JR1]
gi|125862497|gb|ABN57686.1| DEAD/DEAH box helicase domain protein [Methanoculleus marisnigri
JR1]
Length = 527
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 146/393 (37%), Positives = 215/393 (54%), Gaps = 24/393 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
++ G E PIQ T +LDG D+ G+A+TG GKT AF +P +E + G
Sbjct: 20 IEDMGFEEPTPIQVSTIPAILDGRDVTGQAQTGTGKTAAFGVPAIERVDTG--------- 70
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFD-VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
R VLVL PTRELA Q E+F + G+ +YGG P Q L++G+ +V+
Sbjct: 71 -SRETQVLVLSPTRELAIQTAEEFSRLAKHHQGINILPIYGGQPIDRQFRALQRGVQIVV 129
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH++RG + ++K VLDEAD+ML MGF ED+E IL + QT+LFSA
Sbjct: 130 GTPGRVLDHLDRGTLSFGAVKVVVLDEADQMLDMGFREDIEKILD--DTPRDRQTILFSA 187
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST-NVRHIVLPCSSSARSQVIPDIIRCYS 361
TLP + IS KF +K + + + + + + + L S R +++ ++ Y
Sbjct: 188 TLPKPILEISKKF----QKNPEFISVARKEVTVPQIEQLYLEVRSRDRLEILTRLLDMYD 243
Query: 362 SGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
T+IF+ TK L L A LHGD++Q+ R+ +A FR+G LVAT+
Sbjct: 244 PD-LTLIFSNTKRGVDDLTTHLQARGYFAEGLHGDMKQTLRDRVMAKFRAGSIDILVATD 302
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERE 476
VAARG+D+ DV L+I + P+D+E YIHR GRT RAG TG AV P++ + I+
Sbjct: 303 VAARGIDVEDVDLVINYDVPQDIEYYIHRIGRTARAGRTGRAVTFVGPKEYFKLRTIQNY 362
Query: 477 SGVKFEHISAPQPADIAKAAGVEAAETITQVSD 509
+ +K I P D+ ++ + + + Q D
Sbjct: 363 TKIKIARIPLPTQGDVEESRTRKLIDRVHQTID 395
>gi|398798035|ref|ZP_10557337.1| DNA/RNA helicase, superfamily II [Pantoea sp. GM01]
gi|398101283|gb|EJL91506.1| DNA/RNA helicase, superfamily II [Pantoea sp. GM01]
Length = 629
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 144/374 (38%), Positives = 215/374 (57%), Gaps = 27/374 (7%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L G PIQA +L G D++G A+TG GKT AF LP+L ++ PT
Sbjct: 19 ESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLNNID--PTV---- 72
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDV 240
+AP +LVL PTRELA QV E + + G+ LYGG Y Q L++G V
Sbjct: 73 ----KAPQILVLAPTRELAVQVAEAVTEFSKHMRGINVVALYGGQRYDVQLRALRQGPQV 128
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGR+ DH++RG +DLS+L+ VLDEADEMLRMGF+EDVE I+ ++ D + QT LF
Sbjct: 129 VVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDGH--QTALF 186
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P ++ I+ +F+K ++ ++++S R + +A + ++R
Sbjct: 187 SATMPEAIRRITKRFMKDPQEV-------RIQSSLTTRPDISQSYWTAYGRKTDALVRFL 239
Query: 361 SSG--GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ IIF TK + ++A+ L + AL+GD+ Q+ RE TL + G+ L+
Sbjct: 240 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 299
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-I 473
AT+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG G A++ + R+ + + I
Sbjct: 300 ATDVAARGLDVERISLVVNFDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 359
Query: 474 ERESGVKFEHISAP 487
ER + + P
Sbjct: 360 ERTMKLTIPEVELP 373
>gi|86742488|ref|YP_482888.1| DEAD/DEAH box helicase [Frankia sp. CcI3]
gi|86569350|gb|ABD13159.1| DEAD/DEAH box helicase-like [Frankia sp. CcI3]
Length = 649
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 145/359 (40%), Positives = 209/359 (58%), Gaps = 22/359 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GI FPIQ +T + L +D++G+ARTG GKTLAF +P+++++ A+K+
Sbjct: 100 LTEAGIVHAFPIQELTLPLALARNDIIGQARTGTGKTLAFGVPVVQTVL-----AAKEGA 154
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
GR P LV++PTREL QV D G GL +YGG Y Q L+ G+D+V+G
Sbjct: 155 DGR-PQALVVVPTRELCVQVTADVTRAGARRGLRVLSVYGGRAYEPQLSALRAGVDIVVG 213
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D + +DL+ + VLDEADEML +GF+ DVE I+ ++ + QT+LFSAT
Sbjct: 214 TPGRLLDLARQHVLDLAGVGTLVLDEADEMLDLGFLPDVERIMSQLP--TERQTMLFSAT 271
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P V ++ +F+K +E T +H V + + +V + R +G
Sbjct: 272 MPGPVISLARRFMKRPVHVRAEQPDEGRTVPTTRQH-VFRAHALDKMEV---LARVLQAG 327
Query: 364 GR--TIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
GR ++F T+ +A ++A+ L A A+HGD+ Q QRE L FRSGK LVAT+
Sbjct: 328 GRGLAMVFVRTRRTADKVAEDLAKRGFAAAAVHGDLGQGQREQALRAFRSGKVDVLVATD 387
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PRKSSVSK 472
VAARG+DIN V ++ + P D Y+HR GRTGRAG +GVA+ D PR + V+K
Sbjct: 388 VAARGIDINGVTHVVNYQCPEDENVYLHRIGRTGRAGESGVAITFVDWDDLPRWTLVNK 446
>gi|212558739|gb|ACJ31193.1| Helicase:DbpA, RNA-binding:DEAD/DEAH box helicase [Shewanella
piezotolerans WP3]
Length = 611
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 156/433 (36%), Positives = 231/433 (53%), Gaps = 35/433 (8%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
PL L G E PIQA + D ++ G D++G+A+TG GKT AF LP+L S+ P
Sbjct: 16 PLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALPLLNSID--PNTN 73
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKG 237
S P +LVL PTRELA QV E F Y + GL +YGG H Q L++G
Sbjct: 74 S--------PQILVLAPTRELAVQVAEAFGSYAKFMKGLHVLPIYGGQSMHQQLNALRRG 125
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
+++GTPGR+ DH+ RG + L SLK VLDEADEML+MGF++D+E IL + Q
Sbjct: 126 PQIIVGTPGRVMDHMRRGTLKLESLKAMVLDEADEMLKMGFIDDIEWILEHT--PKQRQL 183
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST----NVRHIVLPCSSSARSQVI 353
LFSAT+P +K ++ K+L K+ A+T + + S + + +
Sbjct: 184 ALFSATMPEQIKRVANKYLSEPVHV-------KIAATTTTVETIEQRFVQVSQHNKLEAL 236
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409
++ + G IIF T+ S +LA+ L + LHGD+ Q RE + + GK
Sbjct: 237 VRVLEVEKTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGK 295
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS 469
++AT+VAARGLD+ + ++ + P D EAY+HR GRTGRAG TG+A++ R+
Sbjct: 296 LDIIIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMR 355
Query: 470 VSK-IERESGVKFEHISAPQPADIAK----AAGVEAAETITQVS-DSVIPAFKSAAEELL 523
+ + IER + + + P P + + G + E I + S D + A +EL
Sbjct: 356 MLRTIERATKSRISPMDIPSPETVTERRLSRLGEQIGEVIAKDSLDFMKGAVAKLCQELE 415
Query: 524 NNSGLSAAELLAK 536
++ + AA LL +
Sbjct: 416 VDTDVLAAALLQQ 428
>gi|383819483|ref|ZP_09974754.1| DNA/RNA helicase [Mycobacterium phlei RIVM601174]
gi|383336547|gb|EID14943.1| DNA/RNA helicase [Mycobacterium phlei RIVM601174]
Length = 434
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 145/362 (40%), Positives = 209/362 (57%), Gaps = 18/362 (4%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L + GIE+ FPIQA T L G D++GR RTG GKT AF+LP++ LT P +
Sbjct: 17 LAANGIENPFPIQAATLPDSLAGRDVLGRGRTGSGKTYAFLLPLVTRLTAQPARRVP--- 73
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
GR P L+L PTREL Q++E A GL S + GG + Q L++G+D+VI
Sbjct: 74 -GR-PRALILAPTRELVAQINESLAPLAAATGLRSVTVIGGVGPNPQIQALRRGVDIVIA 131
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
PGR++DH++ G+ DLS ++ +LDEAD M +GF+ V+ +L + Q LLFSAT
Sbjct: 132 CPGRLEDHVKSGHADLSGIEITILDEADHMADLGFLPPVKRLLDRTP--RDGQRLLFSAT 189
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
L + V + ++L SD + + A+ + H VL +AR V+ D+ +S
Sbjct: 190 LDNGVDILVKRYL-SDPVVHSVDSAQSPVAA--MEHHVLHVDKAARLAVLADL---AASP 243
Query: 364 GRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
GRTI+F TK A LA L A LHG++ Q+ R L F G LVAT++A
Sbjct: 244 GRTIVFARTKHGAKNLARQLNSRGVPAVELHGNLSQNARTRNLGAFSDGTATVLVATDIA 303
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG-VAVMLYDPRKSSVSKIERESG 478
ARG+ ++ V L++ +PP + +AY+HRSGRT RAGN G V ++ D + S V ++ R++G
Sbjct: 304 ARGIHVDGVSLVVHADPPVEHKAYLHRSGRTARAGNDGTVVTLMLDEQVSDVRQLTRKAG 363
Query: 479 VK 480
VK
Sbjct: 364 VK 365
>gi|302558562|ref|ZP_07310904.1| ATP-dependent RNA helicase DeaD [Streptomyces griseoflavus Tu4000]
gi|302476180|gb|EFL39273.1| ATP-dependent RNA helicase DeaD [Streptomyces griseoflavus Tu4000]
Length = 868
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 142/365 (38%), Positives = 204/365 (55%), Gaps = 20/365 (5%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L++ GI + FPIQ MT + L G+D++G+A+TG GKTL F LP+LE +T A +
Sbjct: 53 EALEAVGIITPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVT---VPADVE 109
Query: 182 TGYGR------APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
G R AP LV++PTREL QV D G + +YGG Y Q LK
Sbjct: 110 AGRARPEDLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVTAIYGGRAYEPQVEALK 169
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
KG+DVV+GTPGR+ D + ++L +K VLDEADEML +GF+ DVE I+ + K
Sbjct: 170 KGVDVVVGTPGRLLDLAGQKKLNLKHVKALVLDEADEMLDLGFLPDVEKIINFL--PVKR 227
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QT+LFSAT+P V ++ +++ +++ N V + + +++
Sbjct: 228 QTMLFSATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANTTQFVYRAHNMDKPEMVSR 287
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411
I++ G ++F TK +A+ LAD L + A+HGD+ Q RE L FR+GK
Sbjct: 288 ILQA-DGRGLVMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVD 346
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD----PRK 467
LV T+VAARG+D+ V +I + P D + Y+HR GRTGRAG G A+ L D PR
Sbjct: 347 VLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGAKGTAITLVDWDDIPRW 406
Query: 468 SSVSK 472
++K
Sbjct: 407 QLINK 411
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.130 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,243,723,003
Number of Sequences: 23463169
Number of extensions: 349797721
Number of successful extensions: 3847569
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 43035
Number of HSP's successfully gapped in prelim test: 30865
Number of HSP's that attempted gapping in prelim test: 2870155
Number of HSP's gapped (non-prelim): 529651
length of query: 574
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 426
effective length of database: 8,886,646,355
effective search space: 3785711347230
effective search space used: 3785711347230
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 80 (35.4 bits)