BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008207
(574 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q41382|RH7_SPIOL DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea GN=RH7
PE=2 SV=1
Length = 685
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/457 (76%), Positives = 399/457 (87%), Gaps = 6/457 (1%)
Query: 85 KKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVL 144
K KKAKV EA VE +E PN++S FRIS PL++ L SKGI++LFPIQAMTFD V+
Sbjct: 89 KPKKAKVMEEAVVE------AEDPNSLSNFRISKPLKDVLISKGIKALFPIQAMTFDNVI 142
Query: 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204
DG DLVGRARTGQGKTLAFVLPI+ESL NG TK +++G+GR PSVLVLLPTRELA QV
Sbjct: 143 DGCDLVGRARTGQGKTLAFVLPIVESLVNGRTKDLRRSGHGRLPSVLVLLPTRELATQVL 202
Query: 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264
DF VYGGAVGLT+C +YGGAP+H+Q L +G+D+V+GTPGR+KD +E+G + L SL F
Sbjct: 203 ADFQVYGGAVGLTACSVYGGAPFHSQISSLTRGVDIVVGTPGRVKDLLEKGVLKLGSLLF 262
Query: 265 RVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
RVLDEADEML+MGFV+DVELILGKV+ +KVQTLLFSATLPSWVK IST+FLKS KKT+D
Sbjct: 263 RVLDEADEMLKMGFVDDVELILGKVDHVSKVQTLLFSATLPSWVKQISTRFLKSAKKTVD 322
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP 384
LV ++KMKAS +VRHIV+PCS+SAR +IPDIIRCY SGGR+IIFTETKESASQLA LL
Sbjct: 323 LVSDQKMKASISVRHIVIPCSASARPDLIPDIIRCYGSGGRSIIFTETKESASQLAGLLT 382
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444
GAR LHGDIQQ+QREVTL GFR+GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVE YI
Sbjct: 383 GARPLHGDIQQTQREVTLKGFRTGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEDYI 442
Query: 445 HRSGRTGRAGNTGVAVMLYDPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETI 504
HRSGRTGRAGNTGVAVMLYDP++SSV+KIERESGVKFEH+SAPQP D+AKA G+EAA I
Sbjct: 443 HRSGRTGRAGNTGVAVMLYDPKRSSVTKIERESGVKFEHLSAPQPVDVAKAVGIEAAAAI 502
Query: 505 TQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKA 541
Q+SDSVIPAFK AAEELL+ SGLSA ++L+KALAKA
Sbjct: 503 LQISDSVIPAFKDAAEELLSTSGLSAVDILSKALAKA 539
>sp|Q39189|RH7_ARATH DEAD-box ATP-dependent RNA helicase 7 OS=Arabidopsis thaliana
GN=RH7 PE=1 SV=2
Length = 671
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/445 (76%), Positives = 393/445 (88%), Gaps = 3/445 (0%)
Query: 96 GVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRART 155
GVE+ E ++PNAVS+FRIS PLREKLK+ GIE+LFPIQA TFDMVLDG+DLVGRART
Sbjct: 86 GVEDVE---VDNPNAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRART 142
Query: 156 GQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG 215
GQGKTLAFVLPILESL NGP K+ +K GYGR+PSVLVLLPTRELAKQV DFD YGG++G
Sbjct: 143 GQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLG 202
Query: 216 LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275
L+SCCLYGG Y QE KLK+G+D+V+GTPGRIKDHIER N+D S L+FRVLDEADEMLR
Sbjct: 203 LSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLR 262
Query: 276 MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335
MGFVEDVELILGKVED+ KVQTLLFSATLPSWVK+IS +FLK D+KTIDLVGN+KMKAS
Sbjct: 263 MGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASN 322
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQ 395
+VRHI +PC+ +A +++IPDII CYSSGG+TIIF ETK S+L+ LL G+RALHG+I Q
Sbjct: 323 SVRHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLDGSRALHGEIPQ 382
Query: 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN 455
SQREVTLAGFR+GKF TLVATNVAARGLDINDVQLIIQCEPPR+VEAYIHRSGRTGRAGN
Sbjct: 383 SQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGN 442
Query: 456 TGVAVMLYDPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAF 515
TGVAV LYD RKSSVS+IE+E+G+KFEH++APQP +IA++ G+EAAE + QV DSV+PAF
Sbjct: 443 TGVAVTLYDSRKSSVSRIEKEAGIKFEHLAAPQPDEIARSGGMEAAEKVKQVCDSVVPAF 502
Query: 516 KSAAEELLNNSGLSAAELLAKALAK 540
AA+ELL SGLSA LLAKALAK
Sbjct: 503 LEAAKELLETSGLSAEVLLAKALAK 527
>sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp.
japonica GN=Os09g0520700 PE=2 SV=1
Length = 696
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/436 (75%), Positives = 385/436 (88%), Gaps = 1/436 (0%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
PNA++ FRIS LREKLKSKGI++LFPIQA TFD+VLDG DLVGRARTGQGKTLAFVLPI
Sbjct: 114 PNALANFRISESLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPI 173
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LESL NG KAS++T YGR P+VLVLLPTRELAKQVH DF YG GL++CC+YGG+ Y
Sbjct: 174 LESLVNGTHKASRRTDYGRPPTVLVLLPTRELAKQVHTDFAFYGATFGLSACCVYGGSDY 233
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
+QE ++KG+D+V+GTPGR+KD +E+G ++ SLKFRVLDEADEML MGFV+DVELILG
Sbjct: 234 RSQEMAIRKGVDIVVGTPGRVKDFVEKGTLNFRSLKFRVLDEADEMLNMGFVDDVELILG 293
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
KVED KVQTLLFSAT+P WVK +S +FLKS KKT+DLVG+EK+KAS +VRH+ LPC+ +
Sbjct: 294 KVEDVTKVQTLLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLKASASVRHLALPCNRA 353
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRS 407
AR+QVIPDIIRCYS GGRTIIFTETKESAS L+ L+ G+RALHGD+ Q+QREV LAGFRS
Sbjct: 354 ARAQVIPDIIRCYSRGGRTIIFTETKESASDLSGLIAGSRALHGDVAQAQREVILAGFRS 413
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR- 466
GKF+ LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML++PR
Sbjct: 414 GKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFEPRY 473
Query: 467 KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNS 526
K +V++IERESGVKFEHISAPQP D+A++AG EAAE I+ VSDSVIP F+ AE+LLN+S
Sbjct: 474 KFNVNRIERESGVKFEHISAPQPTDVAQSAGTEAAEAISSVSDSVIPVFREQAEQLLNSS 533
Query: 527 GLSAAELLAKALAKAV 542
G+SA +LLAKALAKAV
Sbjct: 534 GMSAVDLLAKALAKAV 549
>sp|Q3B8Q1|DDX21_RAT Nucleolar RNA helicase 2 OS=Rattus norvegicus GN=Ddx21 PE=2 SV=1
Length = 782
Score = 397 bits (1019), Expect = e-109, Method: Compositional matrix adjust.
Identities = 209/448 (46%), Positives = 290/448 (64%), Gaps = 23/448 (5%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
++ E E VE++E A S F IS + LK++G+ LFPIQA TF V G D
Sbjct: 169 SETEKEIPVEQKE-------GAFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKD 221
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L G + + GRAP VLVL PTRELA QV +DF
Sbjct: 222 LIAQARTGTGKTFSFAIPLIEKLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDFS 277
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDH++ G +DL+ LK VL
Sbjct: 278 DI---TKKLSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVL 334
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 335 DEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 394
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD-- 381
L+G + KA+ V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 395 LIGKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNT 454
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++Q PP+DV
Sbjct: 455 CIKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDV 514
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVE 499
E+YIHRSGRTGRAG TGV + Y ++ ++++E+++G+KF+ I P +I KA+ +
Sbjct: 515 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKD 574
Query: 500 AAETITQVSDSVIPAFKSAAEELLNNSG 527
A + V + I FK +AE+L+ G
Sbjct: 575 AIRLLDSVPPTAIGHFKQSAEKLIEEKG 602
>sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 PE=1 SV=5
Length = 783
Score = 397 bits (1019), Expect = e-109, Method: Compositional matrix adjust.
Identities = 211/448 (47%), Positives = 290/448 (64%), Gaps = 23/448 (5%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK +G+ LFPIQA TF V G D
Sbjct: 173 SEIEQEIPVEQKE-------GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKD 225
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L +G + K+ GRAP VLVL PTRELA QV +DF
Sbjct: 226 LIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRAPQVLVLAPTRELANQVSKDFS 281
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK VL
Sbjct: 282 DI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVL 338
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 339 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 398
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 399 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNS 458
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 459 AIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 518
Query: 441 EAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVE 499
E+YIHRSGRTGRAG TGV + Y ++ + ++E+++G+KF+ I P +I KA+ +
Sbjct: 519 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKD 578
Query: 500 AAETITQVSDSVIPAFKSAAEELLNNSG 527
A + V + I FK +AE+L+ G
Sbjct: 579 AIRLLDSVPPTAISHFKQSAEKLIEEKG 606
>sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 PE=1 SV=3
Length = 851
Score = 396 bits (1018), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/427 (47%), Positives = 281/427 (65%), Gaps = 16/427 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E
Sbjct: 259 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIE 318
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L G + + GRAP VLVL PTRELA QV +DF D+ L+ C YGG PY
Sbjct: 319 KLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDFSDI---TKKLSVACFYGGTPYG 371
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF + VE IL
Sbjct: 372 GQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCV 431
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV +++ K++KS + +DL+G + KA+ V H+ + C
Sbjct: 432 AYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCH 491
Query: 346 SSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVT 401
+ R+ VI D+IR YS GRTIIF ETK+ A +L+ + A++LHGDI Q QRE+T
Sbjct: 492 WTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREIT 551
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG TGV +
Sbjct: 552 LKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCIC 611
Query: 462 LYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y ++ ++++E+++G+KF+ I P +I KA+ +A + V + I FK +AE
Sbjct: 612 FYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAE 671
Query: 521 ELLNNSG 527
+L+ G
Sbjct: 672 KLIEEKG 678
>sp|Q9BQ39|DDX50_HUMAN ATP-dependent RNA helicase DDX50 OS=Homo sapiens GN=DDX50 PE=1 SV=1
Length = 737
Score = 393 bits (1010), Expect = e-108, Method: Compositional matrix adjust.
Identities = 226/564 (40%), Positives = 316/564 (56%), Gaps = 61/564 (10%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSET--SSELGEPV 75
M K+ D E EA L E S KK+ +K + K R + +E+ E E + +L P
Sbjct: 1 MPGKLLWGDIMELEAPLEESESQKKERQKSDRRKSRHHYDSDEKSETRENGVTDDLDAPK 60
Query: 76 -------------------NLKSEKEKKKKKKAKVEPEAGVEEQER--------GESEHP 108
L E K K + K P ++E E+ S H
Sbjct: 61 AKKSKMKEKLNGDTEEGFNRLSDEFSKSHKSRRKDLPNGDIDEYEKKSKRVSSLDTSTHK 120
Query: 109 N----------------AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
+ A S F IS + LK +G+ LFPIQ TF V +G DL+ +
Sbjct: 121 SSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQ 180
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYG 211
ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF D+
Sbjct: 181 ARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI-- 234
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D
Sbjct: 235 -TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVD 293
Query: 272 EMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG
Sbjct: 294 QMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGK 353
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLP 384
KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A +
Sbjct: 354 MTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQ 413
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444
A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YI
Sbjct: 414 NAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYI 473
Query: 445 HRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAET 503
HRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+ ++A +
Sbjct: 474 HRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRS 533
Query: 504 ITQVSDSVIPAFKSAAEELLNNSG 527
+ VS + + F+ +A+ L+ G
Sbjct: 534 LASVSYAAVDFFRPSAQRLIEEKG 557
>sp|Q99MJ9|DDX50_MOUSE ATP-dependent RNA helicase DDX50 OS=Mus musculus GN=Ddx50 PE=2 SV=1
Length = 734
Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/427 (46%), Positives = 274/427 (64%), Gaps = 16/427 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK +G+ LFPIQ TF V +G DL+ +ARTG GKT +F +P++E
Sbjct: 135 AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 194
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L K R+P VLVL PTRELA QV +DF D+ L+ C YGG Y
Sbjct: 195 RLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI---TRKLSVACFYGGTSYQ 247
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
+Q +++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E VE I+
Sbjct: 248 SQINQIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHE 307
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV ++ K++KS + +DLVG KA+T V H+ + C
Sbjct: 308 SYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH 367
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVT 401
S R VI D+++ YS S GR IIF ETK++ +++A + A+ LHGDI QSQRE+T
Sbjct: 368 WSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREIT 427
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG TG+ V
Sbjct: 428 LKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVC 487
Query: 462 LYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y PR + + +E+++G+ F+ + P D+ K+ ++A ++ VS + + F+ +A+
Sbjct: 488 FYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQ 547
Query: 521 ELLNNSG 527
L+ G
Sbjct: 548 RLIEEKG 554
>sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Oryza
sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2
Length = 758
Score = 350 bits (897), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 200/450 (44%), Positives = 283/450 (62%), Gaps = 16/450 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A++R + L L+ +GI LFPIQ LDG DL+ RA+TG GKTLAF +P+++
Sbjct: 105 AIARLGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIK 164
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
L S + G R P VLVL PTRELAKQV ++ + A L++ C+YGG Y+
Sbjct: 165 QLMEEDDGRSVRRG--RIPRVLVLAPTRELAKQVEKE--IKESAPKLSTVCVYGGVSYNV 220
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q+ L +G+DVV+GTPGRI D I G++ L +K+ VLDEAD+ML +GF EDVE IL ++
Sbjct: 221 QQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQL 280
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
+ Q++LFSAT+P WVK +S ++L ++ TIDLVG++ K + ++ +P +S+++
Sbjct: 281 --PAERQSMLFSATMPGWVKKLSRRYL-NNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSK 337
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFR 406
V+ D+I Y+ GG+TI+FT+TK A +++ L + ALHGDI Q QRE TL GFR
Sbjct: 338 RTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFR 397
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DP 465
GKF LVAT+VAARGLDI +V LII E P D E ++HRSGRTGRAG G A++++ +
Sbjct: 398 QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNS 457
Query: 466 RKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNN 525
++ +V +ER+ G +F+ IS P D+ +++ T+ V I F AAE L
Sbjct: 458 QRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTESIQYFIPAAERLQEE 517
Query: 526 SGLSAAELLAKALAKAVVSAFLFSSSSNSL 555
G +A LA ALA +S F SS SL
Sbjct: 518 LGPNA---LASALAH--LSGFSQPPSSRSL 542
>sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana
GN=RH53 PE=2 SV=1
Length = 616
Score = 334 bits (856), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 181/394 (45%), Positives = 258/394 (65%), Gaps = 17/394 (4%)
Query: 99 EQERGESEHPN----AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRAR 154
E+ G+SE A+S IS + + L SKGIE LFPIQ + ++G D++GRAR
Sbjct: 90 ERRVGDSESVGGDGLAISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRAR 149
Query: 155 TGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV 214
TG GKTLAF +PI++ + K + K G GR P LVL PTRELA+QV ++F A
Sbjct: 150 TGTGKTLAFGIPIIDKII----KYNAKHGRGRNPLCLVLAPTRELARQVEKEFRE--SAP 203
Query: 215 GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML 274
L + CLYGG P Q +L G+DV +GTPGR+ D ++RG ++LS ++F VLDEAD+ML
Sbjct: 204 SLDTICLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQML 263
Query: 275 RMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAS 334
++GF EDVE+IL K+ + K Q+++FSAT+PSW++ ++ K+L ++ T+DLVG+ K +
Sbjct: 264 QVGFAEDVEIILEKLPE--KRQSMMFSATMPSWIRSLTKKYL-NNPLTVDLVGDSDQKLA 320
Query: 335 TNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHG 391
+ + S R+ +I ++ ++ GG+ I+FT+TK A +L+ L + ALHG
Sbjct: 321 DGITTYSIIADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALARSFKCEALHG 380
Query: 392 DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451
DI QSQRE TLAGFR G F LVAT+VAARGLD+ +V LII E P + E ++HR+GRTG
Sbjct: 381 DISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTG 440
Query: 452 RAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHI 484
RAG G A+++Y +S +V IERE G +F +
Sbjct: 441 RAGKKGSAILIYSQDQSRAVKIIEREVGSRFTEL 474
>sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Arabidopsis
thaliana GN=RH3 PE=1 SV=2
Length = 748
Score = 332 bits (850), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 182/424 (42%), Positives = 266/424 (62%), Gaps = 13/424 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A+S+ + L E L+ +GI LFPIQ L G D++ RA+TG GKTLAF +PI++
Sbjct: 103 AISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIK 162
Query: 170 SLTN--GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LT G A +++G R P LVL PTRELAKQV ++ + A L++ C+YGG Y
Sbjct: 163 RLTEEAGDYTAFRRSG--RLPKFLVLAPTRELAKQVEKE--IKESAPYLSTVCVYGGVSY 218
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q+ L +G+DVV+GTPGRI D IE ++ L +++ VLDEAD+ML +GF E VE IL
Sbjct: 219 TIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILE 278
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
+ K Q++LFSAT+P+WVK ++ K+L + IDLVG++ K + ++ + +S+
Sbjct: 279 NL--PTKRQSMLFSATMPTWVKKLARKYL-DNPLNIDLVGDQDEKLAEGIKLYAIATTST 335
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAG 404
++ ++ D+I Y+ GG+TI+FT+TK A +++ L + ALHGDI Q QRE TL
Sbjct: 336 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNA 395
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY- 463
FR GKF LVAT+VA+RGLDI +V L+I E P D E ++HRSGRTGRAG G A++++
Sbjct: 396 FRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHT 455
Query: 464 DPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELL 523
+K +V +ER+ G FE IS P D+ +++ + T+ V I F + A++L
Sbjct: 456 SSQKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDSIKFFSATAQKLY 515
Query: 524 NNSG 527
G
Sbjct: 516 EEKG 519
>sp|Q9LUW6|RH9_ARATH DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana
GN=RH9 PE=2 SV=1
Length = 610
Score = 329 bits (844), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 173/379 (45%), Positives = 251/379 (66%), Gaps = 13/379 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A++ IS + + LK +GIE LFPIQ + ++G D++GRARTG GKTLAF +PI++
Sbjct: 117 AIADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIID 176
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
+ K + K G G+ P LVL PTRELA+QV ++F A L + CLYGG P
Sbjct: 177 KII----KFNAKHGRGKNPQCLVLAPTRELARQVEKEF--RESAPSLDTICLYGGTPIGQ 230
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q +L GIDV +GTPGRI D ++RG ++LS ++F VLDEAD+ML++GF EDVE+IL K+
Sbjct: 231 QMRELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKL 290
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
K Q+++FSAT+PSW++ ++ K+L ++ TIDLVG+ K + + + S R
Sbjct: 291 P--AKRQSMMFSATMPSWIRSLTKKYL-NNPLTIDLVGDSDQKLADGITMYSIAADSYGR 347
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFR 406
+ +I +++ + GG+ I+FT+TK A +LA L + ALHGDI Q+QRE TLAGFR
Sbjct: 348 ASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGLAKSYKCEALHGDISQAQRERTLAGFR 407
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
G F LVAT+VAARGLD+ +V L+I E P + E ++HR+GRTGRAG G A++++
Sbjct: 408 DGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQD 467
Query: 467 KS-SVSKIERESGVKFEHI 484
++ +V IE+E G +F +
Sbjct: 468 QTRAVKMIEKEVGSRFNEL 486
>sp|Q0D8N0|RH53_ORYSJ DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp.
japonica GN=Os07g0143700 PE=2 SV=2
Length = 602
Score = 322 bits (825), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 176/404 (43%), Positives = 256/404 (63%), Gaps = 21/404 (5%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
V+R IS + E+L ++GI LFPIQ D + G D++GRARTG GKTLAF +PI++
Sbjct: 86 VARLGISPWIVERLAARGITRLFPIQRAVLDPAMQGKDMIGRARTGTGKTLAFGIPIMDR 145
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ + ++K G GR P ++L PTRELA+QV ++F + L S C+YGG P Q
Sbjct: 146 IL----RHNEKNGSGRNPLAIILAPTRELARQVEKEFKE---SAPLDSLCVYGGVPISHQ 198
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
L G+DVV+GTPGRI D + RG ++LS ++F VLDEAD+ML +GF EDVE+I+ +
Sbjct: 199 MRALNYGVDVVVGTPGRIIDLLRRGVLNLSEIQFVVLDEADQMLAVGFDEDVEVIMENLP 258
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
Q++LFSAT+PSW++ I++K+LK D IDLVG+E K + + +
Sbjct: 259 --QNRQSMLFSATMPSWIRKITSKYLK-DPIIIDLVGDEDQKLPEGISLYSIASEHYGKP 315
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRS 407
++ +I+ +++GG+ I+FT+TK A +LA + +ALHGDI Q+QRE TL+GFR
Sbjct: 316 SILGPLIKEHANGGKCIVFTQTKREADRLAYAMGRSYACQALHGDISQNQRERTLSGFRD 375
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DPR 466
G+F LVAT+VAARGLDI +V L+I E P E ++HRSGRT RAG G A+++Y + +
Sbjct: 376 GRFNILVATDVAARGLDIPNVDLVIHYELPNTSELFVHRSGRTARAGKKGSAILIYTNDQ 435
Query: 467 KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDS 510
+V IE++ G KF + + AD EA++ V D+
Sbjct: 436 ARAVRIIEQDIGCKFTELPKIEVAD-------EASDMFNVVRDN 472
>sp|Q0ILZ4|RH9_ORYSJ DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp.
japonica GN=Os12g0611200 PE=2 SV=1
Length = 628
Score = 315 bits (807), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 167/375 (44%), Positives = 247/375 (65%), Gaps = 14/375 (3%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
V++ IS + +L S+GI LFPIQ + + G D+VGRA+TG GKTLAF +PIL++
Sbjct: 100 VAKLGISPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDA 159
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ + ++K G+ P +VL PTRELAKQV +F + + + C+YGG P Q
Sbjct: 160 II----RHNEKNSPGKFPLAIVLAPTRELAKQVEREFS---DSSNVETICVYGGTPISQQ 212
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
+L G+DVVIGTPGR+ D ++RG ++LS ++F VLDEAD+ML +GF EDVE IL +V
Sbjct: 213 IRQLNYGVDVVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVP 272
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
K QTL+FSAT+P+W++ ++ K+LK + TIDLVG + K + + + A+
Sbjct: 273 P--KRQTLMFSATMPTWIQRLTQKYLK-NPVTIDLVGEDDQKLAEGISLYSIASEGHAKP 329
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFRS 407
V+ ++I+ ++ GG+ I+FT+TK A +L+ + + +ALHGDI Q+QRE TL GFR
Sbjct: 330 AVLGELIKEHAKGGKCIVFTQTKRDADRLSYTMGRSFQCQALHGDITQAQRERTLKGFRE 389
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK 467
G F L+AT+VAARGLDI +V L+I E P E ++HRSGRTGRAG G A++++ ++
Sbjct: 390 GHFNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQ 449
Query: 468 S-SVSKIERESGVKF 481
S ++ +E + G KF
Sbjct: 450 SRAIRMVENDVGCKF 464
>sp|Q75B50|DED1_ASHGO ATP-dependent RNA helicase DED1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DED1
PE=3 SV=2
Length = 623
Score = 245 bits (626), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 149/379 (39%), Positives = 213/379 (56%), Gaps = 19/379 (5%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLF----PIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
P+ ++ F S PL E L + F P+Q + +V G DL+ A+TG GKT F
Sbjct: 142 PDPITEF-TSPPLDELLLENIKLARFTKPTPVQKYSVPIVAKGRDLMACAQTGSGKTGGF 200
Query: 164 VLPIL-ESLTNGPTKASKKTGYGR---APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC 219
+ P+L +S +NGP ++GY P+ +VL PTRELA Q+ ++ + + C
Sbjct: 201 LFPVLSQSFSNGPASTPDESGYYMRKAYPTAVVLAPTRELATQIFDEAKKFTYRSWVKPC 260
Query: 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV 279
+YGGA Q +L++G D+++ TPGR+ D +ERG I L S+K+ VLDEAD ML MGF
Sbjct: 261 VVYGGADIRQQIRELERGCDLIVATPGRLNDLLERGKISLCSVKYLVLDEADRMLDMGFE 320
Query: 280 EDVELILGKVE--DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337
+ I+ + QTL+FSAT P+ ++H++ FLK I L S N+
Sbjct: 321 PQIRHIVEGCDMPTVENRQTLMFSATFPTDIQHLAADFLKD---YIFLSVGRVGSTSENI 377
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDI 393
VL + V+ D++ S GG T++F ETK A L D L A A+HGD
Sbjct: 378 TQKVLHVEDIDKRSVLLDLLAA-SDGGLTLVFVETKRMADALTDFLIMQNLSATAIHGDR 436
Query: 394 QQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA 453
Q++RE LA FR+G+ LVAT VAARGLDI +V +I + P D++ Y+HR GRTGRA
Sbjct: 437 TQAERERALAFFRTGRANVLVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRA 496
Query: 454 GNTGVAVMLYDPRKSSVSK 472
GNTG+A ++ +V K
Sbjct: 497 GNTGLATAFFNRGNKNVVK 515
>sp|Q9C718|RH20_ARATH DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana
GN=RH20 PE=1 SV=1
Length = 501
Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 140/364 (38%), Positives = 207/364 (56%), Gaps = 18/364 (4%)
Query: 108 PNAVSRFR-ISVP--LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
P V FR + P + E++K G PIQ+ + M + G DL+G A TG GKTL+++
Sbjct: 95 PKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYL 154
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
LP + + P A +G P VLVL PTRELA Q+ ++ +G + + + C+YGG
Sbjct: 155 LPAIVHVNAQPMLA-----HGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGG 209
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
P Q L+KG+++VI TPGR+ D +E N +L + + VLDEAD ML MGF +
Sbjct: 210 VPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRK 269
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344
I+ + QTL +SAT P V+ +S KFL + K I +G+ +KA+ +R IV
Sbjct: 270 IVSHIRPDR--QTLYWSATWPKEVEQLSKKFLYNPYKVI--IGSSDLKANRAIRQIVDVI 325
Query: 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA-----DLLPGARALHGDIQQSQRE 399
S S + + ++ G R ++F +TK+ Q+ D P A ++HGD Q++R+
Sbjct: 326 SESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQITRQLRMDGWP-ALSIHGDKSQAERD 384
Query: 400 VTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 459
L+ FRSGK + AT+VAARGLD+ DV+ +I + P +E Y+HR GRTGRAG G A
Sbjct: 385 WVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTA 444
Query: 460 VMLY 463
+
Sbjct: 445 YTFF 448
>sp|A5DZE6|DED1_LODEL ATP-dependent RNA helicase DED1 OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=DED1 PE=3 SV=1
Length = 664
Score = 244 bits (622), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 144/364 (39%), Positives = 206/364 (56%), Gaps = 15/364 (4%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKA 178
L E +K P+Q + +V G DL+ A+TG GKT F+ P+L ES NGP
Sbjct: 186 LVENIKLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMNGPAPI 245
Query: 179 SKKTG----YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ TG + P++LV+ PTREL Q++++ + + C +YGGA Q +L
Sbjct: 246 PESTGAFSSHKVYPTILVMAPTRELVSQIYDESKKFAYRSWVRPCVVYGGADIGNQIRQL 305
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE--DA 292
+G D+++ TPGR+KD +ERG + L+++K+ VLDEAD ML MGF + I+ + + D
Sbjct: 306 DRGCDLLVATPGRLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQIRHIVQECDMPDV 365
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
QTL+FSAT P ++ ++ FLK I L S N+ VL + V
Sbjct: 366 QDRQTLMFSATFPRDIQMLARDFLKD---YIFLSVGRVGSTSENITQKVLYVEDEEKKSV 422
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSG 408
I D++ +S G TI+FTETK A LAD L A A+HGD Q +RE LA F+SG
Sbjct: 423 ILDLLNA-NSEGLTIVFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSG 481
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS 468
+ LVAT VAARGLDI +V +I + P D++ Y+HR GRTGRAGN G+A ++
Sbjct: 482 QAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNK 541
Query: 469 SVSK 472
++ K
Sbjct: 542 NIVK 545
>sp|A6ZP47|DED1_YEAS7 ATP-dependent RNA helicase DED1 OS=Saccharomyces cerevisiae (strain
YJM789) GN=DED1 PE=3 SV=1
Length = 604
Score = 244 bits (622), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 146/367 (39%), Positives = 210/367 (57%), Gaps = 21/367 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKA 178
L E +K P+Q + +V +G DL+ A+TG GKT F+ P+L ES GP+
Sbjct: 153 LLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQ 212
Query: 179 SKKTG--YGR--APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ G Y R P+ +++ PTRELA Q+ ++ + + +C +YGG+P Q ++
Sbjct: 213 PESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREI 272
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G D+++ TPGR+ D +ERG I L+++K+ VLDEAD ML MGF + I VED +
Sbjct: 273 ERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHI---VEDCDM 329
Query: 295 V-----QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
QTL+FSAT P+ ++H++ FL I L S N+ VL + +
Sbjct: 330 TPVGERQTLMFSATFPADIQHLARDFLSD---YIFLSVGRVGSTSENITQKVLYVENQDK 386
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGF 405
+ D++ S+ G T+IF ETK A QL D L A A+HGD QS+RE LA F
Sbjct: 387 KSALLDLLSA-STDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAF 445
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
RSG LVAT VAARGLDI +V +I + P DV+ Y+HR GRTGRAGNTG+A ++
Sbjct: 446 RSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNS 505
Query: 466 RKSSVSK 472
S++ K
Sbjct: 506 ENSNIVK 512
>sp|P06634|DED1_YEAST ATP-dependent RNA helicase DED1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DED1 PE=1 SV=2
Length = 604
Score = 243 bits (621), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 146/367 (39%), Positives = 210/367 (57%), Gaps = 21/367 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKA 178
L E +K P+Q + +V +G DL+ A+TG GKT F+ P+L ES GP+
Sbjct: 153 LLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQ 212
Query: 179 SKKTG--YGR--APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ G Y R P+ +++ PTRELA Q+ ++ + + +C +YGG+P Q ++
Sbjct: 213 PESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREI 272
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G D+++ TPGR+ D +ERG I L+++K+ VLDEAD ML MGF + I VED +
Sbjct: 273 ERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHI---VEDCDM 329
Query: 295 V-----QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
QTL+FSAT P+ ++H++ FL I L S N+ VL + +
Sbjct: 330 TPVGERQTLMFSATFPADIQHLARDFLSD---YIFLSVGRVGSTSENITQKVLYVENQDK 386
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGF 405
+ D++ S+ G T+IF ETK A QL D L A A+HGD QS+RE LA F
Sbjct: 387 KSALLDLLSA-STDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAF 445
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
RSG LVAT VAARGLDI +V +I + P DV+ Y+HR GRTGRAGNTG+A ++
Sbjct: 446 RSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNS 505
Query: 466 RKSSVSK 472
S++ K
Sbjct: 506 ENSNIVK 512
>sp|Q89AF9|DEAD_BUCBP Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=deaD PE=3 SV=1
Length = 602
Score = 242 bits (617), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 149/416 (35%), Positives = 232/416 (55%), Gaps = 28/416 (6%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQA ++ G D++G A+TG GKT AF LP+L ++ R P +LVL
Sbjct: 31 PIQAACIPYLIKGKDVLGMAQTGSGKTAAFALPLLHNIKLDV----------RVPQILVL 80
Query: 194 LPTRELAKQVHEDFDVYGGA-VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI 252
PTRELA QV E F + +G+ LYGG Y Q L+KG +++GTPGR+ DH+
Sbjct: 81 TPTRELAVQVAEAFSNFSKKLIGVHVLALYGGQRYDLQLKSLRKGPQIIVGTPGRLLDHL 140
Query: 253 ERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 312
+R + LS+L VLDEADEMLRMGF+EDVE I+ ++ D + QT LFSAT+P ++ IS
Sbjct: 141 KRRTLSLSNLHSLVLDEADEMLRMGFIEDVETIMTEIPDRH--QTALFSATMPEAIRRIS 198
Query: 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS--GGRTIIFT 370
+F+K+ K+ +++++ R + + +IR + TIIF
Sbjct: 199 RRFMKNPKEI-------RIQSNITTRPDIQQSYWMVYGKKTDALIRFLEAEDFSATIIFV 251
Query: 371 ETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426
TK + +++++L + AL+GD+ QS RE TL + G+ L+AT+VAARGLD++
Sbjct: 252 RTKNATLEVSEVLERYGYNSAALNGDMNQSLREQTLEKLKDGRLDILIATDVAARGLDVD 311
Query: 427 DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKFEHIS 485
+ +I + P D E+Y+HR GRTGRAG G A++ + R+ + + IER + ++
Sbjct: 312 RISFVINYDIPMDSESYVHRIGRTGRAGRKGKALLFVENRERRLLRNIERAMNISISEVN 371
Query: 486 APQPADIAKAAGVEAAETI-TQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAK 540
P+ ++K + A+ + Q+ + ++ +L N+ E LA AL K
Sbjct: 372 LPKSDFLSKRRLEKFAQKVQIQLDSKDLHEYRGLLPKLQPNNNSLDIESLAAALLK 427
>sp|Q8TFK8|DED1_CANGA ATP-dependent RNA helicase DED1 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DED1 PE=3 SV=1
Length = 617
Score = 241 bits (616), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 149/383 (38%), Positives = 213/383 (55%), Gaps = 26/383 (6%)
Query: 108 PNAVSRFRISVPLR----EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
P A++ F S PL E +K P+Q + +V G DL+ A+TG GKT F
Sbjct: 141 PEAITEF-TSPPLDSLLLENIKLARFTKPTPVQKYSVPIVSKGRDLMACAQTGSGKTGGF 199
Query: 164 VLPIL-ESLTNGPTKASKKTGYGRA----PSVLVLLPTRELAKQVHEDFDVYGGAVGLTS 218
+ P+L ES GP + + GY P+ +V+ PTRELA Q+ ++ + +
Sbjct: 200 LFPVLSESFLTGPAEKAANDGYSYQRKAFPTAVVMAPTRELATQIFDEAKKFCYRSWVKP 259
Query: 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF 278
C +YGGAP Q ++ G D+++ TPGR+ D +ERG + LS++K+ VLDEAD ML MGF
Sbjct: 260 CVVYGGAPIGNQMREMDHGCDLLVATPGRLNDLLERGKVSLSNVKYLVLDEADRMLDMGF 319
Query: 279 VEDVELILGKVEDAN-----KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKA 333
+ I VED + + QTL+FSAT P ++H++ FL I L
Sbjct: 320 EPQIRHI---VEDCDMPPTGERQTLMFSATFPHDIQHLARDFLHD---YIFLSVGRVGST 373
Query: 334 STNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARAL 389
S N+ +L + ++ + D++ S+ T+IF ETK A QL D L A A+
Sbjct: 374 SENITQRILYVENRDKNSALLDLLAA-SNDNLTLIFVETKRMADQLTDFLIMQNFSATAI 432
Query: 390 HGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 449
HGD Q++RE LA FRSG+ LVAT VAARGLDI +V +I + P DV+ Y+HR GR
Sbjct: 433 HGDRSQAERERALAAFRSGRANILVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGR 492
Query: 450 TGRAGNTGVAVMLYDPRKSSVSK 472
TGRAGNTGVA ++ +++ K
Sbjct: 493 TGRAGNTGVATAFFNRDNNNIVK 515
>sp|Q8K9H6|DEAD_BUCAP Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=deaD PE=3 SV=1
Length = 601
Score = 241 bits (616), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 141/363 (38%), Positives = 212/363 (58%), Gaps = 27/363 (7%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQA ++L+G D++G A+TG GKT AF LP+L +L +AP +LVL
Sbjct: 31 PIQAACIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLNINL----------KAPQILVL 80
Query: 194 LPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI 252
PTRELA QV E F D +G+ LYGG Y Q L++G +V+GTPGR+ DH+
Sbjct: 81 APTRELAVQVAEAFSDFSKYIMGIHVLPLYGGQRYEVQLRALRQGPQIVVGTPGRLLDHL 140
Query: 253 ERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 312
+RG ++LS+L VLDEADEMLRMGF+EDVE I+ ++ + QT LFSAT+P ++ IS
Sbjct: 141 KRGTLNLSNLYALVLDEADEMLRMGFIEDVETIMSQIPKEH--QTALFSATMPEAIRRIS 198
Query: 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY--SSGGRTIIFT 370
+F+K+ ++ K++++ R + + +IR TIIF
Sbjct: 199 KRFMKNPQEI-------KIQSNITTRPDIKQSYWMVYGRKTDALIRFLEVEDFSATIIFV 251
Query: 371 ETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426
+TK + ++++ L + AL+GD+ Q+ RE TL +SG+ L+AT+VAARGLD++
Sbjct: 252 KTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKSGRLDILIATDVAARGLDVD 311
Query: 427 DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKFEHIS 485
+ +I + P D E+Y+HR GRTGRAG G A++ + R+ + + IER +
Sbjct: 312 RISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTINQTIPEVQ 371
Query: 486 APQ 488
P+
Sbjct: 372 LPK 374
>sp|Q5VQL1|RH14_ORYSJ DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp.
japonica GN=Os01g0172200 PE=2 SV=1
Length = 708
Score = 241 bits (614), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 138/350 (39%), Positives = 211/350 (60%), Gaps = 19/350 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLP---ILESLTNGPT 176
LRE ++ G + PIQA ++ + L D+V A+TG GKTL +++P +L+ L
Sbjct: 192 LRE-VQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFILLKRL----- 245
Query: 177 KASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKK 236
+ + + G P+VLVL PTRELA Q+ ++ +G + ++S CLYGGAP Q L++
Sbjct: 246 QHNSRDG----PTVLVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDLER 301
Query: 237 GIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQ 296
G D+V+ TPGR+ D +E + L + + VLDEAD ML MGF + I+ +V+ K Q
Sbjct: 302 GADIVVATPGRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQP--KRQ 359
Query: 297 TLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDI 356
TL+F+AT P V+ I++ L S+ +++ +++ A+ ++ V + +S+ + I
Sbjct: 360 TLMFTATWPKEVRKIASDLL-SNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQI 418
Query: 357 IRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTL 413
+R G + IIF TK QLA L GA A+HGD Q++R+ L+ FRSG+ L
Sbjct: 419 LRSQEPGSKIIIFCSTKRMCDQLARNLARQYGASAIHGDKSQAERDSVLSEFRSGRCPIL 478
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
VAT+VAARGLDI D+++++ + P VE Y+HR GRTGRAG TGVA +
Sbjct: 479 VATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFF 528
>sp|A3LQ01|DED1_PICST ATP-dependent RNA helicase DED1 OS=Scheffersomyces stipitis (strain
ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
GN=DED1 PE=3 SV=3
Length = 647
Score = 240 bits (613), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 148/380 (38%), Positives = 211/380 (55%), Gaps = 20/380 (5%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLF----PIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
P+ ++ F + PL E L S F P+Q + +V G DL+ A+TG GKT F
Sbjct: 164 PDPITSF-TAPPLDELLVENITMSRFTKPTPVQKYSVPIVAGGRDLMACAQTGSGKTGGF 222
Query: 164 VLPIL-ESLTNGPTKASKKTG----YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTS 218
+ P+L ES NGP ++ TG + P++LV+ PTREL Q++++ + +
Sbjct: 223 LFPVLSESYINGPAPIAESTGAFSSHKVHPTILVMAPTRELVSQIYDEAKKFAYRSWVKP 282
Query: 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF 278
+YGGA Q L KG D+++ TPGR+KD +ERG + L+++K+ VLDEAD ML MGF
Sbjct: 283 AVVYGGADIGQQIRNLDKGCDLLVATPGRLKDLLERGRVSLANIKYLVLDEADRMLDMGF 342
Query: 279 VEDVELILGKVE--DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN 336
+ I+ + + D QTL+FSAT P+ ++ ++ FLK I L S N
Sbjct: 343 EPQIRHIVQECDMPDVQDRQTLMFSATFPTDIQMLARDFLKD---YIFLSVGRVGSTSEN 399
Query: 337 VRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGD 392
+ +L + V+ D++ G TIIFTETK A LAD L A A+HGD
Sbjct: 400 ITQKILYVEDEEKKSVLLDLLSA-GDAGLTIIFTETKRMADNLADFLYDQGFPATAIHGD 458
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
Q +RE LA F+SG LVAT VAARGLDI +V +I + P D++ Y+HR GRTGR
Sbjct: 459 RSQYEREKALAAFKSGAAPILVATAVAARGLDIPNVAHVINYDLPSDIDDYVHRIGRTGR 518
Query: 453 AGNTGVAVMLYDPRKSSVSK 472
AGN G+A ++ +V K
Sbjct: 519 AGNVGIATAFFNRNNKNVVK 538
>sp|P57453|DEAD_BUCAI Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=deaD PE=3 SV=1
Length = 601
Score = 240 bits (613), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 140/363 (38%), Positives = 212/363 (58%), Gaps = 27/363 (7%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQA ++L+G D++G A+TG GKT AF LP+L +L +AP +LVL
Sbjct: 31 PIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLNINL----------KAPQILVL 80
Query: 194 LPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI 252
PTRELA QV E F D +G+ LYGG Y Q L++G +V+GTPGR+ DH+
Sbjct: 81 APTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQLRALRQGPQIVVGTPGRLLDHL 140
Query: 253 ERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 312
+RG ++LS+L VLDEADEMLRMGF+EDVE I+ ++ + QT LFSAT+P ++ IS
Sbjct: 141 KRGTLNLSNLHGLVLDEADEMLRMGFIEDVETIMAQIPKEH--QTALFSATMPEAIRRIS 198
Query: 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG--GRTIIFT 370
+F+++ K+ K++++ R + + +IR + TIIF
Sbjct: 199 KRFMRNPKEI-------KIQSNITTRPDIKQSYWMVYGRKTDALIRFLEAEDFSATIIFV 251
Query: 371 ETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426
TK + ++++ L + AL+GD+ Q+ RE TL ++G+ L+AT+VAARGLD++
Sbjct: 252 RTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKNGRLDILIATDVAARGLDVD 311
Query: 427 DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKFEHIS 485
+ +I + P D E+Y+HR GRTGRAG G A++ + R+ + + IER +
Sbjct: 312 RISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKQSIPEVQ 371
Query: 486 APQ 488
P+
Sbjct: 372 LPK 374
>sp|P33906|DEAD_KLEPN Cold-shock DEAD box protein A OS=Klebsiella pneumoniae GN=deaD PE=3
SV=3
Length = 643
Score = 240 bits (612), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 148/396 (37%), Positives = 216/396 (54%), Gaps = 58/396 (14%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +LDG D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 71 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE L + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQALERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAP 487
AG G A++ + R+ + + IER + + P
Sbjct: 339 AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELP 374
>sp|A2QI25|DED1_ASPNC ATP-dependent RNA helicase ded1 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=ded1 PE=3 SV=1
Length = 678
Score = 239 bits (611), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 142/371 (38%), Positives = 210/371 (56%), Gaps = 18/371 (4%)
Query: 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
NA + + L E +K ++ P+Q + +V++G DL+ A+TG GKT F+ PIL
Sbjct: 187 NAFTNPPLDDHLIENIKLAHYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPIL 246
Query: 169 -ESLTNGPT----KASKKTGYGRA----PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC 219
++ NGP+ +A + GYGR P+ L+L PTREL Q+ ++ + + C
Sbjct: 247 SQAYQNGPSAAPAQAGGQFGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPC 306
Query: 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV 279
+YGGA +Q ++++G D+++ TPGR+ D IERG I L ++K+ +LDEAD ML MGF
Sbjct: 307 VVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFE 366
Query: 280 EDVELILG--KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337
+ I+ + N QTL+FSAT P ++ ++ FLK + L S N+
Sbjct: 367 PQIRRIVEGEDMPHVNDRQTLMFSATFPRDIQMLARDFLKD---YVFLSVGRVGSTSENI 423
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDI 393
V + V+ DI+ + + G T+IF ETK A L+D L R A+HGD
Sbjct: 424 TQKVEYVEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDR 483
Query: 394 QQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA 453
Q +RE L FRSG+ LVAT VAARGLDI +V +I + P D++ Y+HR GRTGRA
Sbjct: 484 TQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRA 543
Query: 454 GNTGVAVMLYD 464
GNTG+A ++
Sbjct: 544 GNTGIATAFFN 554
>sp|Q4WP13|DED1_ASPFU ATP-dependent RNA helicase ded1 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=ded1
PE=3 SV=1
Length = 674
Score = 239 bits (611), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 138/346 (39%), Positives = 202/346 (58%), Gaps = 18/346 (5%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPT----KASKKTGYGRA- 187
P+Q + +V++G DL+ A+TG GKT F+ PIL ++ GP+ +AS + GYGR
Sbjct: 213 PVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSPVPAQASGQFGYGRQR 272
Query: 188 ---PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGT 244
P+ L+L PTREL Q+ ++ + + C +YGGA +Q ++++G D+++ T
Sbjct: 273 KAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVAT 332
Query: 245 PGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG--KVEDANKVQTLLFSA 302
PGR+ D IERG I L ++K+ VLDEAD ML MGF + I+ + + N+ QTL+FSA
Sbjct: 333 PGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPNVNERQTLMFSA 392
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T P ++ ++ FLK + L S N+ V + V+ DI+ + +
Sbjct: 393 TFPRDIQMLARDFLKD---YVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGT 449
Query: 363 GGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G T+IF ETK A L+D L R A+HGD Q +RE L FRSG+ LVAT V
Sbjct: 450 SGLTLIFVETKRMADALSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVATAV 509
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
AARGLDI +V +I + P D++ Y+HR GRTGRAGNTG+A ++
Sbjct: 510 AARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFN 555
>sp|A6ZUA1|DBP3_YEAS7 ATP-dependent RNA helicase DBP3 OS=Saccharomyces cerevisiae (strain
YJM789) GN=DBP3 PE=3 SV=1
Length = 523
Score = 239 bits (610), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 135/338 (39%), Positives = 200/338 (59%), Gaps = 19/338 (5%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQA+ + +L G D+VG A TG GKT AF +P + L N K R VLV+
Sbjct: 137 PIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKK--------RGIQVLVI 188
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE 253
PTRELA Q++++ V VG+ CC+YGG P Q +LKK VV+ TPGR+ D ++
Sbjct: 189 SPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKKS-QVVVATPGRLLDLLQ 247
Query: 254 RGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313
G++DLS + + VLDEAD ML GF ED++ I+ + DA+K QTL+F+AT P V+ +++
Sbjct: 248 EGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRET-DASKRQTLMFTATWPKEVRELAS 306
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGR----TIIF 369
F+ + K + + +++ A+ + IV + + + ++++ Y SG + +IF
Sbjct: 307 TFMNNPIK-VSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIF 365
Query: 370 TETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDI 425
K+ A+++ L A+HGD+ Q QR L F+SGK L+AT+VAARGLDI
Sbjct: 366 ALYKKEAARVERNLKYNGYNIAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDI 425
Query: 426 NDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
+V+ +I P VE Y+HR GRTGRAG TG A L+
Sbjct: 426 PNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLF 463
>sp|A1CXK7|DED1_NEOFI ATP-dependent RNA helicase ded1 OS=Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ded1
PE=3 SV=1
Length = 676
Score = 239 bits (609), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 138/346 (39%), Positives = 202/346 (58%), Gaps = 18/346 (5%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPT----KASKKTGYGRA- 187
P+Q + +V++G DL+ A+TG GKT F+ PIL ++ GP+ +AS + GYGR
Sbjct: 215 PVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSAVPAQASGQFGYGRQR 274
Query: 188 ---PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGT 244
P+ L+L PTREL Q+ ++ + + C +YGGA +Q ++++G D+++ T
Sbjct: 275 KAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVAT 334
Query: 245 PGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG--KVEDANKVQTLLFSA 302
PGR+ D IERG I L ++K+ VLDEAD ML MGF + I+ + + N+ QTL+FSA
Sbjct: 335 PGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPNVNERQTLMFSA 394
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T P ++ ++ FLK + L S N+ V + V+ DI+ + +
Sbjct: 395 TFPRDIQMLARDFLKD---YVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGT 451
Query: 363 GGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G T+IF ETK A L+D L R A+HGD Q +RE L FRSG+ LVAT V
Sbjct: 452 SGLTLIFVETKRMADALSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVATAV 511
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
AARGLDI +V +I + P D++ Y+HR GRTGRAGNTG+A ++
Sbjct: 512 AARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFN 557
>sp|Q8W4R3|RH30_ARATH DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana
GN=RH30 PE=2 SV=2
Length = 591
Score = 237 bits (604), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 133/347 (38%), Positives = 201/347 (57%), Gaps = 15/347 (4%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E + G PIQA + M L G DL+G A TG GKTLA++LP L ++ P +
Sbjct: 178 EAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQP-----R 232
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
G P VL+L PTRELA Q+ E+ +G G+ S C+YGGAP Q L++G+++V
Sbjct: 233 LGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIV 292
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
I TPGR+ D +E + +L + + VLDEAD ML MGF + I+ ++ QTLL+S
Sbjct: 293 IATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDR--QTLLWS 350
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
AT P V+ ++ +FL+ K I +G+ +KA+ ++ ++ + + + +++
Sbjct: 351 ATWPREVETLARQFLRDPYKAI--IGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLM 408
Query: 362 SGGRTIIFTETKESASQLA-----DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
G + +IF ETK Q+ D P A A+HGD QS+R+ LA F+SG+ + AT
Sbjct: 409 DGSKILIFVETKRGCDQVTRQLRMDGWP-ALAIHGDKTQSERDRVLAEFKSGRSPIMTAT 467
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
+VAARGLD+ D++ ++ + P +E YIHR GRTGRAG G+A +
Sbjct: 468 DVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFF 514
>sp|Q11039|DEAD_MYCTU Cold-shock DEAD box protein A homolog OS=Mycobacterium tuberculosis
GN=deaD PE=3 SV=1
Length = 563
Score = 237 bits (604), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 157/421 (37%), Positives = 230/421 (54%), Gaps = 30/421 (7%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES IQA T ++ GSD+VG A+TG GKT AF +P+L SK +
Sbjct: 32 GYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPML----------SKIDITSKV 81
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL+PTRELA QV E F YG + L +YGG+ Y Q L++G VV+GTPG
Sbjct: 82 PQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQVVVGTPG 141
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+ER +DLS + F VLDEADEML MGF +DVE IL + + +V LFSAT+P
Sbjct: 142 RMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVA--LFSATMPP 199
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVR--HIVLPCSSSARSQVIPDIIRCYSSGG 364
++ +S K+L ++ K + N+ +I + A ++V+ + + +
Sbjct: 200 AIRKLSAKYLHD---PFEVTCKAKTAVAENISQSYIQVARKMDALTRVLE--VEPFEA-- 252
Query: 365 RTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
I+F TK++ ++A+ L A A+ GD+ Q+QRE T+ R G LVAT+VAA
Sbjct: 253 -MIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAA 311
Query: 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGV 479
RGLD+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + K IE+ +
Sbjct: 312 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQ 371
Query: 480 KFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKSAAEELLNNSGLSAAELLAKAL 538
P D+ + A++IT + I F+ EE + A+ +A AL
Sbjct: 372 TLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMAD-IAAAL 430
Query: 539 A 539
A
Sbjct: 431 A 431
>sp|Q2UGK3|DED1_ASPOR ATP-dependent RNA helicase ded1 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=ded1 PE=3 SV=1
Length = 675
Score = 236 bits (603), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 139/347 (40%), Positives = 201/347 (57%), Gaps = 20/347 (5%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTK----ASKKTGYGRA- 187
P+Q + +V++G DL+ A+TG GKT F+ PIL ++ NGP+ AS + YGR
Sbjct: 211 PVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQNGPSPTPAPASGQFSYGRQR 270
Query: 188 ---PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGT 244
P+ L+L PTREL Q+ ++ + + C +YGGA +Q ++++G D+++ T
Sbjct: 271 KAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVAT 330
Query: 245 PGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED---ANKVQTLLFS 301
PGR+ D IERG I L ++K+ +LDEAD ML MGF + I+ + ED N QTL+FS
Sbjct: 331 PGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIV-EGEDMPHVNDRQTLMFS 389
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
AT P ++ ++ FLK + L S N+ V + V+ DI+ +
Sbjct: 390 ATFPRDIQMLARDFLKD---YVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHG 446
Query: 362 SGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
+ G T+IF ETK A L+D L R A+HGD Q +RE L FRSG+ LVAT
Sbjct: 447 TSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVATA 506
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
VAARGLDI +V +I + P D++ Y+HR GRTGRAGNTG+A ++
Sbjct: 507 VAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFN 553
>sp|Q5JKF2|RH40_ORYSJ DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp.
japonica GN=Os01g0549400 PE=2 SV=2
Length = 792
Score = 236 bits (603), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 142/349 (40%), Positives = 208/349 (59%), Gaps = 20/349 (5%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLP---ILESLTNGPTKA 178
++++ G S PIQA ++ + L D+V A+TG GKTL ++LP ++ L N P
Sbjct: 163 KEIQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKTLGYLLPGFMHIKRLQNNP--- 219
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
++G P+VLVL PTRELA Q+ E+ +G + ++S CLYGGAP Q L +G+
Sbjct: 220 --RSG----PTVLVLAPTRELATQILEEAVKFGRSSRISSTCLYGGAPKGPQLRDLDRGV 273
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
DVV+ TPGR+ D +E I L + + VLDEAD ML MGF + I+ ++ + QTL
Sbjct: 274 DVVVATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEI--PPRRQTL 331
Query: 299 LFSATLPSWVKHISTKFLKSD-KKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
+++AT P V+ I+ L + TI V +++ A++ + V + S + + + I+
Sbjct: 332 MYTATWPKEVRRIAEDLLVHPVQVTIGSV--DELVANSAITQNVELITPSEKLRRLEQIL 389
Query: 358 RCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
R SG + +IF TK QLA L GA A+HGD QS+RE L+ FRSG+ LV
Sbjct: 390 RSQDSGSKVLIFCTTKRMCDQLARTLTRQFGASAIHGDKSQSEREKVLSHFRSGRSPILV 449
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
AT+VAARGLDI D++++I + P +E Y+HR GRTGRAG TGVA +
Sbjct: 450 ATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFF 498
>sp|Q6FS54|DBP3_CANGA ATP-dependent RNA helicase DBP3 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DBP3 PE=3 SV=1
Length = 540
Score = 236 bits (601), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 136/339 (40%), Positives = 205/339 (60%), Gaps = 20/339 (5%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQA+++ +L G D++G A TG GKT AF +P + +L T +SK G VLV+
Sbjct: 153 PIQAVSWPYLLSGKDVIGVAETGSGKTFAFGVPAINNLL---TSSSKPKGI----KVLVI 205
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE 253
PTRELA Q++++ + VG+ C +YGG P Q ++ K +VV+ TPGR+ D IE
Sbjct: 206 SPTRELASQIYDNLVLLTQKVGIDCCVVYGGVPKDDQRRQIAKS-NVVVATPGRLLDLIE 264
Query: 254 RGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313
G++DLS + + VLDEAD ML GF ED++ I+G+ + ++ QTL+F+AT P V+ +++
Sbjct: 265 EGSVDLSPVDYMVLDEADRMLEKGFEEDIKRIIGQTKSKDR-QTLMFTATWPKEVRELAS 323
Query: 314 KFLKSDKKTIDLVGN-EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG----GRTII 368
F+K K +GN +++ A+ + IV ++ + + D+++ Y SG + +I
Sbjct: 324 TFMKEPVKVS--IGNRDELSANKRITQIVEVVDPRSKERKLLDLLKKYQSGPKKNDKVLI 381
Query: 369 FTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLD 424
F K+ AS++ L A+HGD+ Q QR L F+SGK L+AT+VAARGLD
Sbjct: 382 FALYKKEASRVERNLNYNGYKVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLD 441
Query: 425 INDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
I +V+ +I P VE Y+HR GRTGRAG TG A L+
Sbjct: 442 IPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLF 480
>sp|Q5QMN3|RH20_ORYSJ DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp.
japonica GN=Os01g0197200 PE=3 SV=2
Length = 494
Score = 235 bits (600), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 149/402 (37%), Positives = 224/402 (55%), Gaps = 28/402 (6%)
Query: 108 PNAVSRFR-ISVP---LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
P V FR + P L+E K+ +E PIQ+ + M L G DL+G A TG GKTLA+
Sbjct: 87 PKPVREFRDVGFPEYVLQEITKAGFVEPT-PIQSQGWPMALRGRDLIGIAETGSGKTLAY 145
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223
+LP + + P A G P VLVL PTRELA Q+ ++ +G + + S C+YG
Sbjct: 146 LLPAIVHVNAQPILAP-----GDGPIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYG 200
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283
G P Q L+KG+++VI TPGR+ D IE + +L + + VLDEAD ML MGF ++
Sbjct: 201 GVPKGPQVRDLQKGVEIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIK 260
Query: 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343
I+ ++ QTL +SAT P V+ ++ FL K I +G+E++KA+ + V
Sbjct: 261 KIVSQIRPDR--QTLYWSATWPKEVEQLARNFLFDPYKVI--IGSEELKANHAISQHVEI 316
Query: 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA-----DLLPGARALHGDIQQSQR 398
S S + + +++ G R +IF +TK+ Q+ D P A ++HGD Q++R
Sbjct: 317 LSESQKYNKLVNLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKSQAER 375
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
+ L+ F+SGK + AT+VAARGLD+ DV+ +I + P +E Y+HR GRTGRAG G
Sbjct: 376 DWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGT 435
Query: 459 AVMLYDPRKSSVSK----IERESGVKFEHISAPQPADIAKAA 496
A + + +K I E+G K +P+ A++ + A
Sbjct: 436 AYTFFTAANARFAKDLINILEEAGQKV----SPELANMGRGA 473
>sp|Q0CLJ6|DED1_ASPTN ATP-dependent RNA helicase ded1 OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=ded1 PE=3 SV=1
Length = 674
Score = 234 bits (598), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 136/346 (39%), Positives = 198/346 (57%), Gaps = 18/346 (5%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTK----ASKKTGYGRA- 187
P+Q + +V++G DL+ A+TG GKT F+ PIL ++ NGP+ A + GYGR
Sbjct: 211 PVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQNGPSPTPAPAGGQLGYGRQR 270
Query: 188 ---PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGT 244
P+ L+L PTREL Q+ ++ + + C +YGGA +Q ++++G D+++ T
Sbjct: 271 KAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVAT 330
Query: 245 PGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL--GKVEDANKVQTLLFSA 302
PGR+ D IERG I L ++K+ +LDEAD ML MGF + I+ + N QTL+FSA
Sbjct: 331 PGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGEDMPHVNDRQTLMFSA 390
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T P ++ ++ FLK + L S N+ V + V+ DI+ + +
Sbjct: 391 TFPRDIQMLARDFLKD---YVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGT 447
Query: 363 GGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G T+IF ETK A L+D L R A+HGD Q +RE L FRSG+ LVAT V
Sbjct: 448 SGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVATAV 507
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
AA GLDI +V +I + P D++ Y+HR GRTGRAGNTG+A ++
Sbjct: 508 AASGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFN 553
>sp|A5DQS0|DED1_PICGU ATP-dependent RNA helicase DED1 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=DED1 PE=3 SV=3
Length = 637
Score = 234 bits (596), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/351 (40%), Positives = 196/351 (55%), Gaps = 17/351 (4%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKASKKTG----YGRAP 188
P+Q + +V G DL+ A+TG GKT F+ P+L ES NGP + G + P
Sbjct: 194 PVQKYSVPIVASGRDLMACAQTGSGKTGGFLFPVLSESYMNGPDAVPESQGAFSSHKVHP 253
Query: 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI 248
+ LV+ PTREL Q+ E+ + + C +YGGA Q L +G D+++ TPGR+
Sbjct: 254 TALVMAPTRELVSQIFEEAKKFSYRSWVRPCVVYGGADIGTQIRNLDRGCDLLVATPGRL 313
Query: 249 KDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE--DANKVQTLLFSATLPS 306
KD +ERG + LS++K+ VLDEAD ML MGF + I+ + + QTL+FSAT P
Sbjct: 314 KDLLERGRVSLSNIKYLVLDEADRMLDMGFEPQIRHIVQECDMPGVESRQTLMFSATFPR 373
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ ++ FL K I L S N+ VL + V+ D++ + G T
Sbjct: 374 DIQMLARDFL---KDYIFLSVGRVGSTSENITQKVLYVEDDEKKSVLLDLLSA-NDNGLT 429
Query: 367 IIFTETKESASQLADLL-----PGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421
IIFTETK A LAD L P A A+HGD Q +RE LA F+SG LVAT VAAR
Sbjct: 430 IIFTETKRMADNLADFLYDQGFP-ATAIHGDRSQYEREKALAAFKSGTAPILVATAVAAR 488
Query: 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
GLDI +V ++ + P D++ Y+HR GRTGRAGN G+A ++ +V K
Sbjct: 489 GLDIPNVSHVVNYDLPGDIDDYVHRIGRTGRAGNVGIATAFFNRNNRNVVK 539
>sp|Q501J6|DDX17_MOUSE Probable ATP-dependent RNA helicase DDX17 OS=Mus musculus GN=Ddx17
PE=2 SV=1
Length = 650
Score = 234 bits (596), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 138/341 (40%), Positives = 192/341 (56%), Gaps = 21/341 (6%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQ F + L G D+VG A+TG GKTLA++LP + + + P G P LVL
Sbjct: 117 PIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER-----GDGPICLVL 171
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE 253
PTRELA+QV + D YG L S C+YGGAP Q L++G+++ I TPGR+ D +E
Sbjct: 172 APTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 231
Query: 254 RGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313
G +L + VLDEAD ML MGF + I+ ++ QTL++SAT P V+ ++
Sbjct: 232 SGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR--QTLMWSATWPKEVRQLAE 289
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS----QVIPDIIRCYSSGGRTIIF 369
FL+ D I+ VGN ++ A+ N+ IV C S + Q++ +I+ +TIIF
Sbjct: 290 DFLR-DYTQIN-VGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA--EKENKTIIF 345
Query: 370 TETKESASQLA-----DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLD 424
ETK L D P A +HGD Q +R+ L FRSGK L+AT+VA+RGLD
Sbjct: 346 VETKRRCDDLTRRMRRDGWP-AMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLD 404
Query: 425 INDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
+ DV+ +I + P E Y+HR GRT R+ N G A + P
Sbjct: 405 VEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTP 445
>sp|Q6HPE6|CSHA_BACHK DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus thuringiensis
subsp. konkukian (strain 97-27) GN=cshA PE=3 SV=1
Length = 528
Score = 234 bits (596), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 150/414 (36%), Positives = 229/414 (55%), Gaps = 22/414 (5%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S L + ++S G E PIQA T L G D++G+A+TG GKT AF LP+L+ +
Sbjct: 9 LSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKV---- 64
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
K++ G +V+ PTRELA QV E+ G + +YGG + Q LK
Sbjct: 65 -DTHKESVQG-----IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
K +++GTPGRI DHI R + L +++ VLDEADEML MGF+ED+E IL V + +
Sbjct: 119 KHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH-- 176
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QTLLFSAT+P ++ I+ +F+ ++ + I + E N++ L + V+
Sbjct: 177 QTLLFSATMPDPIRRIAERFM-TEPQHIKVKAKE--VTMPNIQQFYLEVQEKKKFDVLTR 233
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411
++ S I+F TK +L++ L A +HGD+ Q++R L F+ G
Sbjct: 234 LLDIQSP-ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SV 470
LVAT+VAARGLDI+ V + + P+D E+Y+HR GRTGRAG G+A++ PR+S +
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQL 352
Query: 471 SKIERESGVKFEHISAPQPADIAKAAGVEAAETI-TQVSDSVIPAFKSAAEELL 523
IER + K + + AP + + AE + + + + + +K AEE+L
Sbjct: 353 KNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEML 406
>sp|Q81VG0|CSHA_BACAN DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus anthracis
GN=cshA PE=3 SV=1
Length = 528
Score = 234 bits (596), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 150/414 (36%), Positives = 229/414 (55%), Gaps = 22/414 (5%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S L + ++S G E PIQA T L G D++G+A+TG GKT AF LP+L+ +
Sbjct: 9 LSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKV---- 64
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
K++ G +V+ PTRELA QV E+ G + +YGG + Q LK
Sbjct: 65 -DTHKESVQG-----IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
K +++GTPGRI DHI R + L +++ VLDEADEML MGF+ED+E IL V + +
Sbjct: 119 KHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH-- 176
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QTLLFSAT+P ++ I+ +F+ ++ + I + E N++ L + V+
Sbjct: 177 QTLLFSATMPDPIRRIAERFM-TEPQHIKVKAKE--VTMPNIQQFYLEVQEKKKFDVLTR 233
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411
++ S I+F TK +L++ L A +HGD+ Q++R L F+ G
Sbjct: 234 LLDIQSP-ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SV 470
LVAT+VAARGLDI+ V + + P+D E+Y+HR GRTGRAG G+A++ PR+S +
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQL 352
Query: 471 SKIERESGVKFEHISAPQPADIAKAAGVEAAETI-TQVSDSVIPAFKSAAEELL 523
IER + K + + AP + + AE + + + + + +K AEE+L
Sbjct: 353 KNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEML 406
>sp|A0R8U6|CSHA_BACAH DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus thuringiensis
(strain Al Hakam) GN=cshA PE=3 SV=1
Length = 528
Score = 234 bits (596), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 150/414 (36%), Positives = 229/414 (55%), Gaps = 22/414 (5%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S L + ++S G E PIQA T L G D++G+A+TG GKT AF LP+L+ +
Sbjct: 9 LSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKV---- 64
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
K++ G +V+ PTRELA QV E+ G + +YGG + Q LK
Sbjct: 65 -DTHKESVQG-----IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
K +++GTPGRI DHI R + L +++ VLDEADEML MGF+ED+E IL V + +
Sbjct: 119 KHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH-- 176
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QTLLFSAT+P ++ I+ +F+ ++ + I + E N++ L + V+
Sbjct: 177 QTLLFSATMPDPIRRIAERFM-TEPQHIKVKAKE--VTMPNIQQFYLEVQEKKKFDVLTR 233
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411
++ S I+F TK +L++ L A +HGD+ Q++R L F+ G
Sbjct: 234 LLDIQSP-ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SV 470
LVAT+VAARGLDI+ V + + P+D E+Y+HR GRTGRAG G+A++ PR+S +
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQL 352
Query: 471 SKIERESGVKFEHISAPQPADIAKAAGVEAAETI-TQVSDSVIPAFKSAAEELL 523
IER + K + + AP + + AE + + + + + +K AEE+L
Sbjct: 353 KNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEML 406
>sp|Q0UWA6|DED1_PHANO ATP-dependent RNA helicase DED1 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=DED1 PE=3 SV=1
Length = 696
Score = 234 bits (596), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 145/375 (38%), Positives = 215/375 (57%), Gaps = 24/375 (6%)
Query: 108 PNAVSRFRISVPLREKLKSK----GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
P V+RF + PL + L S G + P+Q + +V+ G DL+ A+TG GKT F
Sbjct: 197 PEPVTRF-TNPPLDDHLLSNIELSGYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGF 255
Query: 164 VLPIL-ESLTNGPT--KASKKTGYGRA----PSVLVLLPTRELAKQVHEDFDVYGGAVGL 216
+ PIL ++ NGP+ ++ GYGR P+ L+L PTREL Q+ ++ + +
Sbjct: 256 LFPILAQAFQNGPSPPPTAQAGGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWV 315
Query: 217 TSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM 276
C +YGGA +Q ++++G D+++ TPGR+ D IERG I L+S+K+ VLDEAD ML M
Sbjct: 316 RPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLASIKYLVLDEADRMLDM 375
Query: 277 GFVEDVELILGKVEDANKV---QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKA 333
GF + I+ + ED QTL+FSAT P ++ ++ FL K+ I L
Sbjct: 376 GFEPQIRRIV-EGEDMPPTAGRQTLMFSATFPRDIQMLARDFL---KEYIFLSVGRVGST 431
Query: 334 STNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARAL 389
S N+ + + + V+ DI+ + + G ++IF ETK A L+D L A ++
Sbjct: 432 SENITQKIEYVEDADKRSVLLDILHTHGA-GLSLIFVETKRMADSLSDFLINQGFPATSI 490
Query: 390 HGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 449
HGD Q +RE L FRSG+ LVAT VAARGLDI +V ++ + P D++ Y+HR GR
Sbjct: 491 HGDRTQREREKALEMFRSGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGR 550
Query: 450 TGRAGNTGVAVMLYD 464
TGRAGNTG+A ++
Sbjct: 551 TGRAGNTGIATAFFN 565
>sp|Q63GX5|CSHA_BACCZ DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain
ZK / E33L) GN=cshA PE=3 SV=1
Length = 528
Score = 234 bits (596), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 150/414 (36%), Positives = 229/414 (55%), Gaps = 22/414 (5%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S L + ++S G E PIQA T L G D++G+A+TG GKT AF LP+L+ +
Sbjct: 9 LSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKV---- 64
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
K++ G +V+ PTRELA QV E+ G + +YGG + Q LK
Sbjct: 65 -DTHKESVQG-----IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
K +++GTPGRI DHI R + L +++ VLDEADEML MGF+ED+E IL V + +
Sbjct: 119 KHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH-- 176
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QTLLFSAT+P ++ I+ +F+ ++ + I + E N++ L + V+
Sbjct: 177 QTLLFSATMPDPIRRIAERFM-TEPQHIKVKAKE--VTMPNIQQFYLEVQEKKKFDVLTR 233
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411
++ S I+F TK +L++ L A +HGD+ Q++R L F+ G
Sbjct: 234 LLDIQSP-ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SV 470
LVAT+VAARGLDI+ V + + P+D E+Y+HR GRTGRAG G+A++ PR+S +
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQL 352
Query: 471 SKIERESGVKFEHISAPQPADIAKAAGVEAAETI-TQVSDSVIPAFKSAAEELL 523
IER + K + + AP + + AE + + + + + +K AEE+L
Sbjct: 353 KNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEML 406
>sp|P44586|DEAD_HAEIN Cold-shock DEAD box protein A homolog OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=deaD PE=3
SV=1
Length = 613
Score = 234 bits (596), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 142/351 (40%), Positives = 204/351 (58%), Gaps = 27/351 (7%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQ +L+G+D++G A+TG GKT AF LP+L + P++ +
Sbjct: 24 GFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQID--PSE--------KH 73
Query: 188 PSVLVLLPTRELAKQVHEDFDVY-GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P +LV+ PTRELA QV + +++ A G LYGG Y Q LK+G VV+GTPG
Sbjct: 74 PQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQGAQVVVGTPG 133
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
RI DHI RG ++LS L+F VLDEADEMLRMGF++DVE ++ ++ + + QT LFSAT+P
Sbjct: 134 RILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENH--QTALFSATMPE 191
Query: 307 WVKHISTKFLKSDKKTIDLVGNEK---MKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
++ I+ +F+ ++ V NE + S H V + R + D
Sbjct: 192 PIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF------- 244
Query: 364 GRTIIFTETKESASQLADLLP--GAR--ALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
IIF TK + +LL G R AL+GD+ Q RE TL R+G +VAT+VA
Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 470
ARG+DI + L++ + P D E+Y+HR GRTGRAG +G A++ +PR+ +
Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRL 355
>sp|Q92841|DDX17_HUMAN Probable ATP-dependent RNA helicase DDX17 OS=Homo sapiens GN=DDX17
PE=1 SV=2
Length = 729
Score = 233 bits (595), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 138/341 (40%), Positives = 192/341 (56%), Gaps = 21/341 (6%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQ F + L G D+VG A+TG GKTLA++LP + + + P G P LVL
Sbjct: 196 PIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER-----GDGPICLVL 250
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE 253
PTRELA+QV + D YG L S C+YGGAP Q L++G+++ I TPGR+ D +E
Sbjct: 251 APTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 310
Query: 254 RGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313
G +L + VLDEAD ML MGF + I+ ++ QTL++SAT P V+ ++
Sbjct: 311 SGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR--QTLMWSATWPKEVRQLAE 368
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS----QVIPDIIRCYSSGGRTIIF 369
FL+ D I+ VGN ++ A+ N+ IV C S + Q++ +I+ +TIIF
Sbjct: 369 DFLR-DYTQIN-VGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA--EKENKTIIF 424
Query: 370 TETKESASQLA-----DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLD 424
ETK L D P A +HGD Q +R+ L FRSGK L+AT+VA+RGLD
Sbjct: 425 VETKRRCDDLTRRMRRDGWP-AMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLD 483
Query: 425 INDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
+ DV+ +I + P E Y+HR GRT R+ N G A + P
Sbjct: 484 VEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTP 524
>sp|Q73EU1|CSHA_BACC1 DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain
ATCC 10987) GN=cshA PE=3 SV=1
Length = 525
Score = 233 bits (595), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 150/414 (36%), Positives = 228/414 (55%), Gaps = 22/414 (5%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S L + ++S G E PIQA T L G D++G+A+TG GKT AF LP+L+ +
Sbjct: 9 LSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKV---- 64
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
K++ G +V+ PTRELA QV E+ G + +YGG + Q LK
Sbjct: 65 -DTHKESVQG-----IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
K +++GTPGRI DHI R + L +++ VLDEADEML MGF+ED+E IL V + +
Sbjct: 119 KHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH-- 176
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QTLLFSAT+P ++ I+ +F+ ++ + I + E N++ L + V+
Sbjct: 177 QTLLFSATMPDPIRRIAERFM-TEPQHIKVKAKE--VTMPNIQQFYLEVQEKKKFDVLTR 233
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411
++ S I+F TK +L++ L A +HGD+ Q++R L F+ G
Sbjct: 234 LLDIQSP-ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SV 470
LVAT+VAARGLDI+ V + + P+D E+Y+HR GRTGRAG G+A++ PR+S +
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQL 352
Query: 471 SKIERESGVKFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKSAAEELL 523
IER + K + + AP + + AE + + + + +K AEE+L
Sbjct: 353 KNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQNTIENENLAYYKRIAEEML 406
>sp|Q2GUI4|DBP3_CHAGB ATP-dependent RNA helicase DBP3 OS=Chaetomium globosum (strain ATCC
6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)
GN=DBP3 PE=3 SV=1
Length = 566
Score = 233 bits (595), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 140/354 (39%), Positives = 201/354 (56%), Gaps = 27/354 (7%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK---TGYGRAPSV 190
PIQA ++ L G D++G A TG GKT+AF +P +ESL + P K T Y RA
Sbjct: 206 PIQAASWPFALSGRDVIGIAETGSGKTMAFAVPCIESLASSPKPNHAKGDRTAYARA--- 262
Query: 191 LVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKK--GIDVVIGTPGRI 248
+V+ PTRELA Q H VGL+ CLYGGAP Q L+K G D+++ TPGR+
Sbjct: 263 VVVSPTRELAMQTHAAMSSLASLVGLSVVCLYGGAPKDDQRALLRKNSGADIIVATPGRL 322
Query: 249 KDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWV 308
KD + G + LS + F VLDEAD ML GF ED++LILG K QTL+F+AT P+ V
Sbjct: 323 KDFLSEGCVSLSDVMFAVLDEADRMLDKGFEEDIKLILGSCRPREKRQTLMFTATWPTSV 382
Query: 309 KHISTKFLKSD-KKTI----------DLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
+ ++ F+ K TI + G+ +++A+ + V + Q + +++
Sbjct: 383 RGLAEGFMIDPVKATIGNRTRAGEEGEGNGSTELQANIRIEQKVEVVDPRGKEQRLLELL 442
Query: 358 RCYSSGG----RTIIFTETKESASQLADLLP--GAR--ALHGDIQQSQREVTLAGFRSGK 409
+ G R ++F K+ A ++ L G R ++HGD++Q QR +L F++G
Sbjct: 443 KEAQKGSAKNDRILVFCLYKKEAVRVEQNLERRGIRVCSIHGDLRQDQRTRSLESFKAGT 502
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
LVAT+VAARGLDI +V+L+I P +E Y+HR GRTGRAG G A+ L+
Sbjct: 503 TSVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKKGKAITLF 556
>sp|Q5L3G9|CSHA_GEOKA DEAD-box ATP-dependent RNA helicase CshA OS=Geobacillus
kaustophilus (strain HTA426) GN=cshA PE=3 SV=1
Length = 467
Score = 233 bits (595), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 156/406 (38%), Positives = 217/406 (53%), Gaps = 30/406 (7%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E PIQA T + L D++G+A+TG GKT AF +PI+E + K S A
Sbjct: 21 GFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKVN---VKNS-------A 70
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGR 247
LV+ PTRELA QV E+ G + +YGG Q LKK V++GTPGR
Sbjct: 71 VQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKHPHVIVGTPGR 130
Query: 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSW 307
I DHI RG + L + VLDEADEML MGF+ED+E IL V QTLLFSAT+P
Sbjct: 131 IIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAER--QTLLFSATMPDP 188
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKAS----TNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
++ I+ +F+ +LV K+KA N++ L + ++ ++ +
Sbjct: 189 IRRIAERFMNEP----ELV---KVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQAP- 240
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
I+F TK +LA+ L A +HGD+ Q++R L F+ G LVAT+VA
Sbjct: 241 ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVA 300
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK-SSVSKIERESG 478
ARGLDI+ V + + P+D E+Y+HR GRTGRAG TGVA+ PR+ + IER +
Sbjct: 301 ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERTTK 360
Query: 479 VKFEHISAPQPADIAKAAGVEAAETITQVSDS-VIPAFKSAAEELL 523
K E + P + + A E + V ++ + +K AAEELL
Sbjct: 361 RKMERMKPPTLDEALEGQQRIAIEKLLNVVETENLSFYKRAAEELL 406
>sp|Q81IT9|CSHA_BACCR DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain
ATCC 14579 / DSM 31) GN=cshA PE=3 SV=2
Length = 533
Score = 233 bits (595), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 150/414 (36%), Positives = 229/414 (55%), Gaps = 22/414 (5%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S L + ++S G E PIQA T L G D++G+A+TG GKT AF LP+L+ +
Sbjct: 9 LSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKV---- 64
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
K++ G +V+ PTRELA QV E+ G + +YGG + Q LK
Sbjct: 65 -DTHKESVQG-----IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
K +++GTPGRI DHI R + L +++ VLDEADEML MGF+ED+E IL V + +
Sbjct: 119 KHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH-- 176
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QTLLFSAT+P ++ I+ +F+ ++ + I + E N++ L + V+
Sbjct: 177 QTLLFSATMPDPIRRIAERFM-TEPQHIKVKAKE--VTMPNIQQFYLEVQEKKKFDVLTR 233
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411
++ S I+F TK +L++ L A +HGD+ Q++R L F+ G
Sbjct: 234 LLDIQSP-ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SV 470
LVAT+VAARGLDI+ V + + P+D E+Y+HR GRTGRAG G+A++ PR+S +
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQL 352
Query: 471 SKIERESGVKFEHISAPQPADIAKAAGVEAAETI-TQVSDSVIPAFKSAAEELL 523
IER + K + + AP + + AE + + + + + +K AEE+L
Sbjct: 353 KNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEML 406
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 200,410,452
Number of Sequences: 539616
Number of extensions: 8722013
Number of successful extensions: 105506
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2554
Number of HSP's successfully gapped in prelim test: 2076
Number of HSP's that attempted gapping in prelim test: 59144
Number of HSP's gapped (non-prelim): 25358
length of query: 574
length of database: 191,569,459
effective HSP length: 123
effective length of query: 451
effective length of database: 125,196,691
effective search space: 56463707641
effective search space used: 56463707641
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)