Query 008207
Match_columns 574
No_of_seqs 451 out of 4036
Neff 9.3
Searched_HMMs 46136
Date Thu Mar 28 20:51:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008207.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008207hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 1.3E-79 2.8E-84 584.6 32.8 369 105-489 57-431 (476)
2 KOG0331 ATP-dependent RNA heli 100.0 7.3E-79 1.6E-83 618.3 35.1 351 110-466 92-448 (519)
3 KOG0338 ATP-dependent RNA heli 100.0 2E-76 4.3E-81 579.0 30.8 367 108-487 180-558 (691)
4 KOG0342 ATP-dependent RNA heli 100.0 2.2E-73 4.7E-78 557.9 35.6 371 108-489 81-458 (543)
5 COG0513 SrmB Superfamily II DN 100.0 5.4E-73 1.2E-77 601.1 39.8 371 109-491 29-408 (513)
6 KOG0340 ATP-dependent RNA heli 100.0 1.5E-71 3.2E-76 523.4 32.6 371 108-491 6-387 (442)
7 KOG0347 RNA helicase [RNA proc 100.0 2E-72 4.3E-77 555.5 25.6 387 104-494 176-599 (731)
8 KOG0328 Predicted ATP-dependen 100.0 7E-72 1.5E-76 509.9 26.7 369 103-487 21-395 (400)
9 KOG0345 ATP-dependent RNA heli 100.0 9.1E-70 2E-74 528.6 36.8 409 109-526 4-425 (567)
10 KOG0343 RNA Helicase [RNA proc 100.0 2E-70 4.3E-75 541.4 31.7 371 105-487 65-444 (758)
11 PRK11634 ATP-dependent RNA hel 100.0 2.1E-68 4.5E-73 576.0 48.2 423 109-547 6-438 (629)
12 KOG0333 U5 snRNP-like RNA heli 100.0 2.3E-69 4.9E-74 531.5 31.9 362 108-474 244-633 (673)
13 KOG0326 ATP-dependent RNA heli 100.0 5.4E-69 1.2E-73 498.8 22.1 366 104-486 80-450 (459)
14 PRK04837 ATP-dependent RNA hel 100.0 2.8E-66 6.1E-71 544.0 41.0 374 108-488 7-385 (423)
15 KOG0335 ATP-dependent RNA heli 100.0 1.2E-66 2.6E-71 519.8 30.6 356 109-466 74-444 (482)
16 KOG0348 ATP-dependent RNA heli 100.0 2.2E-66 4.9E-71 511.2 30.6 366 106-476 133-565 (708)
17 PRK11776 ATP-dependent RNA hel 100.0 3E-65 6.5E-70 542.1 41.1 367 108-491 3-375 (460)
18 KOG0336 ATP-dependent RNA heli 100.0 3.4E-66 7.3E-71 494.4 29.7 350 108-466 218-572 (629)
19 PTZ00110 helicase; Provisional 100.0 3.5E-65 7.6E-70 546.7 41.0 363 106-476 127-495 (545)
20 PRK10590 ATP-dependent RNA hel 100.0 2.6E-64 5.7E-69 532.5 41.3 369 110-488 2-375 (456)
21 PRK04537 ATP-dependent RNA hel 100.0 7.4E-64 1.6E-68 538.1 40.9 368 110-484 10-383 (572)
22 KOG0346 RNA helicase [RNA proc 100.0 5.3E-65 1.2E-69 490.9 27.5 359 109-475 19-420 (569)
23 PLN00206 DEAD-box ATP-dependen 100.0 3.3E-63 7.2E-68 530.1 40.5 362 106-476 118-486 (518)
24 PRK11192 ATP-dependent RNA hel 100.0 2.1E-62 4.6E-67 517.1 41.7 362 110-483 2-370 (434)
25 KOG0341 DEAD-box protein abstr 100.0 3.7E-65 8.1E-70 484.1 14.2 352 106-466 167-528 (610)
26 KOG0339 ATP-dependent RNA heli 100.0 3.7E-62 8.1E-67 478.0 31.9 351 106-466 220-575 (731)
27 PRK01297 ATP-dependent RNA hel 100.0 5.4E-61 1.2E-65 510.7 43.7 370 106-482 84-459 (475)
28 KOG0350 DEAD-box ATP-dependent 100.0 1.7E-61 3.6E-66 473.7 32.6 359 109-478 127-553 (620)
29 KOG0332 ATP-dependent RNA heli 100.0 2.8E-61 6E-66 456.6 25.7 370 106-494 87-473 (477)
30 KOG0327 Translation initiation 100.0 2.6E-60 5.6E-65 454.5 24.7 361 109-487 26-392 (397)
31 PTZ00424 helicase 45; Provisio 100.0 3.3E-58 7.2E-63 481.7 40.6 364 108-487 27-396 (401)
32 KOG0334 RNA helicase [RNA proc 100.0 1.1E-58 2.3E-63 493.1 29.8 369 107-487 363-740 (997)
33 KOG0337 ATP-dependent RNA heli 100.0 4.4E-59 9.6E-64 448.0 21.5 362 108-483 20-386 (529)
34 TIGR03817 DECH_helic helicase/ 100.0 1.7E-54 3.6E-59 476.9 40.5 368 115-504 20-428 (742)
35 KOG4284 DEAD box protein [Tran 100.0 5.8E-56 1.3E-60 445.3 23.5 345 105-466 21-379 (980)
36 KOG0344 ATP-dependent RNA heli 100.0 9E-55 1.9E-59 436.9 25.4 360 114-483 141-516 (593)
37 PLN03137 ATP-dependent DNA hel 100.0 3.7E-50 8E-55 438.7 35.3 330 112-466 440-787 (1195)
38 TIGR00614 recQ_fam ATP-depende 100.0 1.5E-49 3.2E-54 421.3 33.4 324 126-474 6-342 (470)
39 KOG0329 ATP-dependent RNA heli 100.0 7.5E-51 1.6E-55 366.9 14.2 334 103-482 36-373 (387)
40 PRK02362 ski2-like helicase; P 100.0 3.6E-48 7.8E-53 431.5 31.9 334 110-466 2-397 (737)
41 PRK13767 ATP-dependent helicas 100.0 5.8E-47 1.3E-51 425.3 41.4 371 116-494 18-430 (876)
42 PRK11057 ATP-dependent DNA hel 100.0 1.1E-47 2.5E-52 417.1 34.5 326 114-466 7-343 (607)
43 TIGR02621 cas3_GSU0051 CRISPR- 100.0 4.5E-47 9.9E-52 409.4 32.6 314 127-465 12-390 (844)
44 TIGR01389 recQ ATP-dependent D 100.0 3.6E-46 7.7E-51 406.8 32.9 317 123-466 4-331 (591)
45 PRK00254 ski2-like helicase; P 100.0 2.3E-45 4.9E-50 408.1 33.2 330 110-466 2-388 (720)
46 TIGR00580 mfd transcription-re 100.0 5.9E-44 1.3E-48 396.6 35.1 319 114-466 434-770 (926)
47 PRK01172 ski2-like helicase; P 100.0 1.1E-43 2.4E-48 393.0 32.1 330 110-466 2-378 (674)
48 PHA02653 RNA helicase NPH-II; 100.0 1.7E-43 3.7E-48 380.3 32.3 314 134-474 167-523 (675)
49 PRK09751 putative ATP-dependen 100.0 1E-42 2.2E-47 396.1 36.8 339 151-497 1-420 (1490)
50 PRK10689 transcription-repair 100.0 6.2E-43 1.3E-47 396.5 33.5 313 119-465 589-918 (1147)
51 COG1201 Lhr Lhr-like helicases 100.0 3.2E-42 7E-47 369.8 35.5 357 116-489 8-388 (814)
52 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.5E-42 3.3E-47 381.6 33.2 299 134-466 5-336 (819)
53 PRK09401 reverse gyrase; Revie 100.0 2.6E-42 5.7E-47 392.1 35.9 281 127-438 77-410 (1176)
54 PRK10917 ATP-dependent DNA hel 100.0 8.8E-42 1.9E-46 374.9 36.1 314 118-464 248-587 (681)
55 TIGR00643 recG ATP-dependent D 100.0 8.4E-42 1.8E-46 372.8 35.6 316 119-464 224-564 (630)
56 KOG0349 Putative DEAD-box RNA 100.0 1.8E-43 3.9E-48 340.7 17.4 277 186-466 285-615 (725)
57 PRK11664 ATP-dependent RNA hel 100.0 3.7E-42 8.1E-47 379.5 28.8 299 134-466 8-339 (812)
58 PRK12898 secA preprotein trans 100.0 1.8E-40 3.9E-45 351.1 28.7 321 127-472 100-592 (656)
59 TIGR01054 rgy reverse gyrase. 100.0 6.6E-40 1.4E-44 373.2 34.5 288 119-438 66-409 (1171)
60 COG0514 RecQ Superfamily II DN 100.0 2.7E-40 5.8E-45 343.0 26.9 320 122-467 7-338 (590)
61 PRK14701 reverse gyrase; Provi 100.0 7.1E-40 1.5E-44 379.5 27.8 315 119-466 67-456 (1638)
62 PRK09200 preprotein translocas 100.0 1.6E-38 3.5E-43 343.3 30.6 324 127-471 75-546 (790)
63 TIGR01587 cas3_core CRISPR-ass 100.0 8.5E-39 1.9E-43 329.5 24.8 295 148-465 1-335 (358)
64 PHA02558 uvsW UvsW helicase; P 100.0 4.7E-38 1E-42 335.0 28.7 301 129-459 112-445 (501)
65 TIGR00963 secA preprotein tran 100.0 3.4E-38 7.3E-43 335.3 26.8 319 127-470 53-521 (745)
66 COG1111 MPH1 ERCC4-like helica 100.0 6.2E-37 1.3E-41 303.9 32.0 322 128-466 12-481 (542)
67 PRK11131 ATP-dependent RNA hel 100.0 1.3E-37 2.8E-42 348.6 29.1 296 134-466 77-411 (1294)
68 TIGR03714 secA2 accessory Sec 100.0 1.9E-37 4.1E-42 331.8 28.3 319 128-470 68-541 (762)
69 COG1204 Superfamily II helicas 100.0 1.5E-36 3.3E-41 330.9 28.3 333 115-466 15-408 (766)
70 COG1202 Superfamily II helicas 100.0 1.3E-36 2.8E-41 303.2 25.1 339 107-466 192-553 (830)
71 PRK13766 Hef nuclease; Provisi 100.0 3.5E-35 7.6E-40 331.3 36.2 322 128-466 12-479 (773)
72 TIGR03158 cas3_cyano CRISPR-as 100.0 5.5E-35 1.2E-39 298.2 29.6 289 135-451 1-357 (357)
73 COG1205 Distinct helicase fami 100.0 9.8E-35 2.1E-39 321.1 32.0 334 116-466 55-422 (851)
74 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.9E-34 4.1E-39 324.5 29.0 305 128-466 61-404 (1283)
75 KOG0354 DEAD-box like helicase 100.0 3.4E-34 7.3E-39 300.7 27.3 322 128-466 59-529 (746)
76 TIGR00603 rad25 DNA repair hel 100.0 1.1E-33 2.5E-38 302.9 31.0 323 130-483 254-630 (732)
77 KOG0351 ATP-dependent DNA heli 100.0 5.1E-34 1.1E-38 312.9 26.4 320 123-466 256-592 (941)
78 KOG0352 ATP-dependent DNA heli 100.0 2.5E-33 5.4E-38 270.5 21.6 329 119-474 6-371 (641)
79 KOG0952 DNA/RNA helicase MER3/ 100.0 2.1E-32 4.5E-37 290.0 26.6 329 126-466 105-491 (1230)
80 PRK04914 ATP-dependent helicas 100.0 4.3E-31 9.4E-36 292.7 38.2 355 131-504 152-644 (956)
81 KOG0948 Nuclear exosomal RNA h 100.0 1.9E-33 4.2E-38 287.6 16.2 308 130-466 128-539 (1041)
82 PRK05580 primosome assembly pr 100.0 4E-31 8.6E-36 289.5 34.7 305 130-463 143-546 (679)
83 PRK13104 secA preprotein trans 100.0 7.2E-32 1.6E-36 290.8 27.5 323 128-470 80-591 (896)
84 PRK12899 secA preprotein trans 100.0 8.6E-31 1.9E-35 281.8 30.3 149 111-274 64-228 (970)
85 KOG0353 ATP-dependent DNA heli 100.0 2.5E-31 5.4E-36 253.0 21.8 334 109-466 71-467 (695)
86 cd00268 DEADc DEAD-box helicas 100.0 9E-31 1.9E-35 247.8 25.1 200 111-321 1-200 (203)
87 KOG0947 Cytoplasmic exosomal R 100.0 5.2E-31 1.1E-35 276.2 24.3 310 127-466 294-723 (1248)
88 PRK12904 preprotein translocas 100.0 1.1E-29 2.4E-34 274.0 30.1 319 127-470 78-577 (830)
89 PRK09694 helicase Cas3; Provis 100.0 3E-29 6.5E-34 276.5 28.0 311 129-455 284-664 (878)
90 KOG0922 DEAH-box RNA helicase 100.0 1.5E-29 3.3E-34 259.2 23.0 303 132-466 52-390 (674)
91 COG4581 Superfamily II RNA hel 100.0 4.8E-29 1E-33 272.0 27.1 316 125-466 114-537 (1041)
92 KOG0923 mRNA splicing factor A 100.0 1.9E-29 4E-34 255.7 22.0 365 128-528 262-667 (902)
93 PRK12906 secA preprotein trans 100.0 4.1E-29 9E-34 268.4 25.7 325 127-471 77-558 (796)
94 TIGR00595 priA primosomal prot 100.0 6.4E-29 1.4E-33 262.8 25.9 287 150-467 1-383 (505)
95 COG1643 HrpA HrpA-like helicas 100.0 4E-29 8.6E-34 271.2 22.3 304 132-466 51-387 (845)
96 KOG0951 RNA helicase BRR2, DEA 100.0 9.8E-29 2.1E-33 265.1 23.9 336 116-465 296-701 (1674)
97 COG1061 SSL2 DNA or RNA helica 100.0 4.2E-28 9.1E-33 253.6 26.0 294 129-452 34-375 (442)
98 PRK13107 preprotein translocas 100.0 3.1E-28 6.6E-33 262.0 25.0 323 128-470 80-595 (908)
99 COG1200 RecG RecG-like helicas 100.0 2.9E-27 6.2E-32 245.2 29.5 321 114-466 245-591 (677)
100 KOG0920 ATP-dependent RNA heli 100.0 4.8E-27 1E-31 253.8 25.9 410 118-571 160-633 (924)
101 PF00270 DEAD: DEAD/DEAH box h 100.0 4.5E-27 9.8E-32 215.6 20.8 167 133-310 1-168 (169)
102 COG1197 Mfd Transcription-repa 100.0 7.2E-26 1.6E-30 247.3 30.9 321 113-466 576-913 (1139)
103 KOG0926 DEAH-box RNA helicase 99.9 6.6E-27 1.4E-31 241.4 18.8 306 136-466 261-704 (1172)
104 COG4098 comFA Superfamily II D 99.9 1.1E-24 2.4E-29 206.0 27.8 298 131-466 97-416 (441)
105 KOG0924 mRNA splicing factor A 99.9 6.4E-26 1.4E-30 230.5 20.5 310 126-466 351-697 (1042)
106 KOG0950 DNA polymerase theta/e 99.9 6.1E-26 1.3E-30 240.3 20.2 329 120-466 212-611 (1008)
107 PRK11448 hsdR type I restricti 99.9 2.7E-25 6E-30 252.1 24.8 316 130-464 412-813 (1123)
108 PLN03142 Probable chromatin-re 99.9 5.5E-25 1.2E-29 245.0 26.1 316 131-466 169-599 (1033)
109 KOG0925 mRNA splicing factor A 99.9 4.6E-24 1E-28 209.8 20.2 318 108-466 24-387 (699)
110 PRK12900 secA preprotein trans 99.9 2.7E-23 5.9E-28 224.7 21.6 122 347-470 581-715 (1025)
111 COG1110 Reverse gyrase [DNA re 99.9 2.2E-21 4.7E-26 206.9 32.4 282 124-437 75-416 (1187)
112 TIGR01407 dinG_rel DnaQ family 99.9 6.9E-21 1.5E-25 215.3 36.4 345 116-477 231-828 (850)
113 TIGR00631 uvrb excinuclease AB 99.9 1.6E-21 3.5E-26 211.4 26.6 124 351-475 430-563 (655)
114 COG1203 CRISPR-associated heli 99.9 7.5E-22 1.6E-26 218.6 23.8 322 131-466 195-550 (733)
115 PRK12326 preprotein translocas 99.9 1.7E-20 3.6E-25 198.0 28.7 322 127-473 75-554 (764)
116 COG1198 PriA Primosomal protei 99.9 1.2E-20 2.7E-25 202.4 27.5 316 130-474 197-612 (730)
117 KOG0385 Chromatin remodeling c 99.9 3.1E-21 6.6E-26 199.5 21.2 317 130-466 166-599 (971)
118 PRK05298 excinuclease ABC subu 99.9 8.7E-21 1.9E-25 207.3 25.6 135 351-486 434-587 (652)
119 KOG0949 Predicted helicase, DE 99.9 3.2E-21 6.9E-26 203.5 19.9 159 131-306 511-673 (1330)
120 KOG0387 Transcription-coupled 99.9 2.5E-20 5.5E-25 193.8 22.3 324 114-466 196-658 (923)
121 COG0556 UvrB Helicase subunit 99.9 6.6E-20 1.4E-24 183.3 23.7 163 294-466 386-557 (663)
122 PRK13103 secA preprotein trans 99.9 8.2E-20 1.8E-24 197.4 24.8 326 127-471 79-596 (913)
123 smart00487 DEXDc DEAD-like hel 99.8 1.8E-19 3.9E-24 169.1 21.7 179 126-317 3-183 (201)
124 PRK12903 secA preprotein trans 99.8 2.1E-18 4.5E-23 184.7 26.5 325 127-470 75-543 (925)
125 KOG0384 Chromodomain-helicase 99.8 8.5E-20 1.8E-24 197.6 13.0 312 130-466 369-811 (1373)
126 KOG0392 SNF2 family DNA-depend 99.8 6.9E-19 1.5E-23 189.9 19.4 332 131-476 975-1466(1549)
127 PRK07246 bifunctional ATP-depe 99.8 1.6E-17 3.4E-22 185.5 30.0 326 127-477 242-797 (820)
128 TIGR00348 hsdR type I site-spe 99.8 9.7E-18 2.1E-22 184.2 25.8 309 132-464 239-649 (667)
129 COG4096 HsdR Type I site-speci 99.8 2.8E-18 6E-23 180.9 19.6 294 129-453 163-525 (875)
130 CHL00122 secA preprotein trans 99.8 1.5E-17 3.2E-22 179.3 25.1 130 127-274 73-209 (870)
131 KOG1123 RNA polymerase II tran 99.8 6.7E-19 1.5E-23 174.1 12.3 309 129-466 300-653 (776)
132 KOG0390 DNA repair protein, SN 99.8 3.1E-17 6.6E-22 175.4 25.6 320 131-466 238-707 (776)
133 KOG2340 Uncharacterized conser 99.8 9.6E-18 2.1E-22 167.3 18.4 347 129-478 214-678 (698)
134 PF06862 DUF1253: Protein of u 99.8 2.1E-16 4.6E-21 160.7 27.2 289 186-478 36-425 (442)
135 KOG0389 SNF2 family DNA-depend 99.8 3.5E-17 7.6E-22 170.4 21.3 327 131-476 399-900 (941)
136 KOG4150 Predicted ATP-dependen 99.8 4.3E-17 9.2E-22 163.6 18.6 346 124-486 279-663 (1034)
137 PRK12902 secA preprotein trans 99.8 1.5E-16 3.4E-21 171.1 24.2 129 128-274 83-218 (939)
138 TIGR03117 cas_csf4 CRISPR-asso 99.7 1.2E-15 2.6E-20 163.1 30.1 112 362-475 469-627 (636)
139 cd00079 HELICc Helicase superf 99.7 1.7E-17 3.7E-22 144.9 11.9 124 338-462 3-131 (131)
140 KOG1000 Chromatin remodeling p 99.7 1.2E-15 2.7E-20 151.2 24.2 325 129-477 196-617 (689)
141 KOG0953 Mitochondrial RNA heli 99.7 3E-16 6.4E-21 157.8 17.0 276 146-475 191-486 (700)
142 cd00046 DEXDc DEAD-like helica 99.7 8.2E-16 1.8E-20 135.7 17.4 144 147-304 1-144 (144)
143 PRK08074 bifunctional ATP-depe 99.7 1.4E-14 3.1E-19 164.9 31.4 116 362-477 751-907 (928)
144 PF00271 Helicase_C: Helicase 99.7 6.7E-17 1.5E-21 127.4 7.7 70 385-454 9-78 (78)
145 COG4889 Predicted helicase [Ge 99.7 4.5E-16 9.8E-21 163.1 11.4 335 110-463 141-585 (1518)
146 PRK12901 secA preprotein trans 99.6 7.8E-15 1.7E-19 159.6 18.4 119 351-469 616-744 (1112)
147 KOG0391 SNF2 family DNA-depend 99.6 1.9E-14 4.1E-19 154.6 20.8 118 349-466 1261-1387(1958)
148 KOG0951 RNA helicase BRR2, DEA 99.6 2.7E-14 5.8E-19 155.3 21.7 308 133-473 1145-1502(1674)
149 PF04851 ResIII: Type III rest 99.6 8.3E-15 1.8E-19 135.9 14.3 152 131-305 3-183 (184)
150 COG1199 DinG Rad3-related DNA 99.6 4.9E-13 1.1E-17 148.7 26.3 105 362-466 478-617 (654)
151 PRK11747 dinG ATP-dependent DN 99.6 4.3E-12 9.3E-17 140.3 31.1 102 362-466 533-674 (697)
152 PRK14873 primosome assembly pr 99.5 1E-12 2.2E-17 142.7 24.4 280 152-471 166-544 (665)
153 KOG1002 Nucleotide excision re 99.5 7.3E-13 1.6E-17 131.6 21.1 119 364-482 639-767 (791)
154 KOG0386 Chromatin remodeling c 99.5 1.8E-14 3.9E-19 153.9 9.9 318 129-465 392-837 (1157)
155 TIGR02562 cas3_yersinia CRISPR 99.5 5.4E-13 1.2E-17 146.2 19.6 310 130-455 407-881 (1110)
156 smart00490 HELICc helicase sup 99.5 3E-14 6.6E-19 113.2 6.5 70 385-454 13-82 (82)
157 TIGR00604 rad3 DNA repair heli 99.5 2.1E-11 4.6E-16 135.9 27.3 72 129-210 8-83 (705)
158 KOG0388 SNF2 family DNA-depend 99.4 3.1E-12 6.7E-17 132.0 16.3 120 347-466 1027-1154(1185)
159 KOG0921 Dosage compensation co 99.4 9.6E-13 2.1E-17 139.0 12.2 314 135-477 382-783 (1282)
160 KOG1015 Transcription regulato 99.3 1.4E-10 3.1E-15 123.3 21.8 118 349-466 1127-1277(1567)
161 COG0653 SecA Preprotein transl 99.3 4.1E-11 8.9E-16 129.3 17.9 320 133-467 80-546 (822)
162 COG0553 HepA Superfamily II DN 99.3 1.1E-10 2.4E-15 134.9 20.6 119 348-466 692-822 (866)
163 PF02399 Herpes_ori_bp: Origin 99.3 3.5E-10 7.5E-15 121.5 21.6 286 146-466 49-388 (824)
164 KOG4439 RNA polymerase II tran 99.3 7.5E-11 1.6E-15 122.3 15.6 113 362-474 745-868 (901)
165 PF07652 Flavi_DEAD: Flaviviru 99.2 8.9E-11 1.9E-15 100.3 9.9 138 145-308 3-140 (148)
166 PF00176 SNF2_N: SNF2 family N 99.2 1.9E-10 4.1E-15 115.5 14.1 154 135-304 1-172 (299)
167 smart00488 DEXDc2 DEAD-like he 99.1 5.1E-10 1.1E-14 110.8 13.6 73 131-210 8-84 (289)
168 smart00489 DEXDc3 DEAD-like he 99.1 5.1E-10 1.1E-14 110.8 13.6 73 131-210 8-84 (289)
169 PF07517 SecA_DEAD: SecA DEAD- 99.1 4E-09 8.7E-14 101.6 15.1 130 127-274 74-210 (266)
170 COG0610 Type I site-specific r 98.8 9.2E-07 2E-11 101.0 23.4 289 147-464 274-651 (962)
171 TIGR00596 rad1 DNA repair prot 98.5 2.1E-06 4.5E-11 95.5 16.8 66 236-303 6-71 (814)
172 KOG1016 Predicted DNA helicase 98.5 1.6E-06 3.4E-11 91.4 14.5 103 363-465 719-848 (1387)
173 PRK15483 type III restriction- 98.5 1.3E-06 2.9E-11 97.1 13.2 143 147-306 60-240 (986)
174 PF13086 AAA_11: AAA domain; P 98.3 2E-06 4.3E-11 82.8 9.2 74 131-209 1-75 (236)
175 KOG0952 DNA/RNA helicase MER3/ 98.3 2.4E-07 5.2E-12 100.9 2.3 137 132-283 928-1067(1230)
176 PF13604 AAA_30: AAA domain; P 98.3 8.1E-06 1.8E-10 76.2 11.2 121 131-300 1-127 (196)
177 PF02562 PhoH: PhoH-like prote 98.2 3.4E-06 7.3E-11 78.2 7.0 144 129-300 2-152 (205)
178 KOG1132 Helicase of the DEAD s 98.2 1E-05 2.2E-10 87.4 10.5 141 130-274 20-260 (945)
179 KOG1802 RNA helicase nonsense 98.1 3E-05 6.5E-10 81.0 12.8 81 125-221 404-484 (935)
180 PF13307 Helicase_C_2: Helicas 98.1 2E-05 4.3E-10 71.6 10.1 103 362-466 8-150 (167)
181 KOG1001 Helicase-like transcri 98.1 1.7E-05 3.8E-10 86.4 10.8 113 364-476 540-662 (674)
182 PF13872 AAA_34: P-loop contai 98.1 7.4E-05 1.6E-09 72.6 13.4 178 107-310 19-226 (303)
183 PF09848 DUF2075: Uncharacteri 97.9 5.1E-05 1.1E-09 77.9 10.6 108 148-288 3-117 (352)
184 KOG1803 DNA helicase [Replicat 97.9 5.7E-05 1.2E-09 78.7 10.5 64 131-207 185-249 (649)
185 PRK10536 hypothetical protein; 97.9 0.00034 7.5E-09 66.8 14.2 47 127-173 55-101 (262)
186 PF14617 CMS1: U3-containing 9 97.9 4.3E-05 9.4E-10 73.0 7.9 87 185-272 124-212 (252)
187 TIGR00376 DNA helicase, putati 97.9 0.00015 3.3E-09 79.7 12.9 66 131-209 157-223 (637)
188 PF12340 DUF3638: Protein of u 97.8 0.00013 2.8E-09 68.3 10.4 150 111-275 5-186 (229)
189 PRK10875 recD exonuclease V su 97.8 0.00027 5.9E-09 76.9 13.3 140 132-300 153-298 (615)
190 COG3587 Restriction endonuclea 97.7 0.00011 2.4E-09 79.3 9.3 70 408-477 482-565 (985)
191 TIGR01447 recD exodeoxyribonuc 97.7 0.00044 9.5E-09 75.1 14.1 137 134-300 148-292 (586)
192 PF13245 AAA_19: Part of AAA d 97.7 0.00013 2.7E-09 56.5 7.1 53 146-207 10-62 (76)
193 TIGR01448 recD_rel helicase, p 97.6 0.00089 1.9E-08 74.9 14.2 128 130-300 322-449 (720)
194 COG3421 Uncharacterized protei 97.4 0.00089 1.9E-08 69.7 10.6 152 151-315 2-175 (812)
195 PF00580 UvrD-helicase: UvrD/R 97.3 0.00092 2E-08 67.4 8.9 123 132-271 1-125 (315)
196 TIGR02768 TraA_Ti Ti-type conj 97.3 0.0052 1.1E-07 69.1 15.2 122 130-300 351-473 (744)
197 PF13401 AAA_22: AAA domain; P 97.3 0.00096 2.1E-08 57.7 7.4 23 145-167 3-25 (131)
198 PRK13889 conjugal transfer rel 97.3 0.0041 8.9E-08 71.1 14.3 125 127-301 343-468 (988)
199 PRK04296 thymidine kinase; Pro 97.2 0.0014 2.9E-08 60.9 8.5 110 147-304 3-115 (190)
200 PRK14722 flhF flagellar biosyn 97.0 0.0054 1.2E-07 62.5 11.3 133 145-316 136-270 (374)
201 PF05970 PIF1: PIF1-like helic 97.0 0.0017 3.8E-08 66.8 7.8 123 131-291 1-131 (364)
202 PRK13826 Dtr system oriT relax 97.0 0.014 3E-07 67.3 15.0 137 115-301 366-503 (1102)
203 KOG1805 DNA replication helica 96.9 0.0038 8.3E-08 68.7 9.6 125 129-274 667-809 (1100)
204 cd00009 AAA The AAA+ (ATPases 96.9 0.012 2.6E-07 51.3 11.6 17 146-162 19-35 (151)
205 PF13871 Helicase_C_4: Helicas 96.9 0.0033 7.2E-08 61.0 8.3 67 400-466 52-127 (278)
206 PRK12723 flagellar biosynthesi 96.8 0.033 7.1E-07 57.4 14.6 132 146-315 174-309 (388)
207 PRK14974 cell division protein 96.8 0.015 3.3E-07 58.6 11.8 55 260-316 221-276 (336)
208 PRK11889 flhF flagellar biosyn 96.8 0.038 8.3E-07 56.3 14.4 129 147-316 242-375 (436)
209 PRK05707 DNA polymerase III su 96.7 0.023 5.1E-07 57.4 13.0 35 131-165 3-41 (328)
210 PRK08181 transposase; Validate 96.7 0.02 4.4E-07 55.9 12.0 23 142-164 102-124 (269)
211 PRK06526 transposase; Provisio 96.7 0.0081 1.8E-07 58.3 9.1 31 141-171 93-123 (254)
212 COG1419 FlhF Flagellar GTP-bin 96.7 0.029 6.3E-07 57.0 13.1 132 145-316 202-336 (407)
213 KOG0298 DEAD box-containing he 96.7 0.0065 1.4E-07 68.8 9.2 154 145-305 373-551 (1394)
214 PRK07952 DNA replication prote 96.5 0.027 5.9E-07 54.2 11.2 46 259-305 160-206 (244)
215 PHA02533 17 large terminase pr 96.5 0.022 4.8E-07 61.3 11.6 150 131-304 59-210 (534)
216 COG1875 NYN ribonuclease and A 96.5 0.015 3.4E-07 57.6 9.1 142 127-299 224-383 (436)
217 smart00382 AAA ATPases associa 96.5 0.0067 1.4E-07 52.5 6.2 18 146-163 2-19 (148)
218 KOG0383 Predicted helicase [Ge 96.4 0.00014 3.1E-09 78.5 -5.8 74 349-422 616-696 (696)
219 KOG0989 Replication factor C, 96.4 0.009 2E-07 57.8 6.8 45 257-304 125-169 (346)
220 TIGR02760 TraI_TIGR conjugativ 96.3 0.18 4E-06 62.6 19.5 210 131-384 429-647 (1960)
221 TIGR01075 uvrD DNA helicase II 96.3 0.014 3E-07 65.9 9.2 71 130-211 3-73 (715)
222 PRK05642 DNA replication initi 96.3 0.013 2.8E-07 56.3 7.6 46 259-306 95-141 (234)
223 PF00448 SRP54: SRP54-type pro 96.3 0.012 2.6E-07 54.8 6.9 55 260-316 82-137 (196)
224 cd01124 KaiC KaiC is a circadi 96.3 0.031 6.8E-07 51.5 9.8 49 149-211 2-50 (187)
225 KOG0701 dsRNA-specific nucleas 96.2 0.0035 7.7E-08 73.6 3.9 90 365-454 294-399 (1606)
226 TIGR03420 DnaA_homol_Hda DnaA 96.1 0.036 7.9E-07 52.9 9.9 21 145-165 37-57 (226)
227 PRK05703 flhF flagellar biosyn 96.1 0.15 3.2E-06 53.5 14.9 130 146-316 221-355 (424)
228 PRK06893 DNA replication initi 96.1 0.032 6.9E-07 53.5 9.3 47 259-306 89-136 (229)
229 TIGR01074 rep ATP-dependent DN 96.1 0.024 5.3E-07 63.5 9.7 69 132-211 2-70 (664)
230 smart00492 HELICc3 helicase su 96.1 0.023 4.9E-07 49.8 7.4 78 389-466 27-138 (141)
231 PRK11331 5-methylcytosine-spec 96.1 0.021 4.5E-07 59.3 8.3 33 132-164 180-212 (459)
232 PRK11773 uvrD DNA-dependent he 96.1 0.018 4E-07 64.9 8.6 71 130-211 8-78 (721)
233 cd01120 RecA-like_NTPases RecA 96.1 0.058 1.3E-06 48.1 10.4 20 149-168 2-21 (165)
234 PRK06921 hypothetical protein; 96.0 0.13 2.8E-06 50.5 13.2 27 145-172 116-142 (266)
235 COG2805 PilT Tfp pilus assembl 96.0 0.026 5.6E-07 54.6 7.9 27 149-176 128-154 (353)
236 KOG1131 RNA polymerase II tran 96.0 0.061 1.3E-06 55.6 10.8 47 129-175 14-64 (755)
237 PF05127 Helicase_RecD: Helica 96.0 0.0032 6.9E-08 57.0 1.6 124 150-305 1-124 (177)
238 PRK11054 helD DNA helicase IV; 96.0 0.039 8.5E-07 61.3 10.2 72 129-211 194-265 (684)
239 PRK12727 flagellar biosynthesi 95.9 0.39 8.3E-06 51.1 16.9 21 145-165 349-369 (559)
240 PRK08727 hypothetical protein; 95.9 0.038 8.3E-07 53.1 8.9 16 147-162 42-57 (233)
241 PRK12377 putative replication 95.9 0.11 2.3E-06 50.3 11.9 48 146-207 101-148 (248)
242 PRK06964 DNA polymerase III su 95.9 0.1 2.2E-06 52.9 12.1 44 259-306 130-173 (342)
243 cd01122 GP4d_helicase GP4d_hel 95.9 0.044 9.5E-07 54.0 9.4 29 143-171 27-55 (271)
244 PRK10919 ATP-dependent DNA hel 95.9 0.022 4.7E-07 63.6 8.0 70 131-211 2-71 (672)
245 PRK14964 DNA polymerase III su 95.9 0.17 3.6E-06 53.8 14.0 44 259-306 114-157 (491)
246 PRK06731 flhF flagellar biosyn 95.9 0.24 5.2E-06 48.4 14.2 131 145-316 74-209 (270)
247 PF03354 Terminase_1: Phage Te 95.9 0.036 7.8E-07 59.4 9.2 148 134-300 1-159 (477)
248 PRK08769 DNA polymerase III su 95.8 0.15 3.2E-06 51.2 12.9 37 129-165 2-45 (319)
249 PRK06871 DNA polymerase III su 95.8 0.15 3.3E-06 51.2 12.9 44 259-306 105-148 (325)
250 smart00491 HELICc2 helicase su 95.8 0.028 6.1E-07 49.3 6.7 71 396-466 31-139 (142)
251 PRK06995 flhF flagellar biosyn 95.8 0.13 2.7E-06 54.5 12.7 22 146-167 256-277 (484)
252 PRK14721 flhF flagellar biosyn 95.7 0.11 2.3E-06 54.1 11.6 133 145-316 190-324 (420)
253 PRK00771 signal recognition pa 95.7 0.084 1.8E-06 55.3 10.9 53 262-316 176-229 (437)
254 TIGR01547 phage_term_2 phage t 95.7 0.055 1.2E-06 56.6 9.7 147 148-316 3-152 (396)
255 PRK14712 conjugal transfer nic 95.7 0.083 1.8E-06 63.2 11.9 63 131-204 835-901 (1623)
256 PRK08116 hypothetical protein; 95.7 0.31 6.7E-06 47.8 14.2 47 147-207 115-161 (268)
257 PRK08084 DNA replication initi 95.6 0.11 2.4E-06 49.9 10.8 44 262-306 98-142 (235)
258 PRK14956 DNA polymerase III su 95.6 0.1 2.2E-06 54.9 11.0 19 148-166 42-60 (484)
259 PRK08699 DNA polymerase III su 95.6 0.13 2.8E-06 51.9 11.5 36 132-167 2-42 (325)
260 PRK13709 conjugal transfer nic 95.6 0.14 3E-06 62.3 13.4 65 130-203 966-1032(1747)
261 PF05876 Terminase_GpA: Phage 95.5 0.032 7E-07 60.6 7.3 126 130-274 15-147 (557)
262 PRK12726 flagellar biosynthesi 95.4 0.21 4.6E-06 50.8 12.2 23 146-168 206-228 (407)
263 KOG1133 Helicase of the DEAD s 95.4 0.89 1.9E-05 49.1 17.1 112 363-476 629-792 (821)
264 COG1435 Tdk Thymidine kinase [ 95.4 0.2 4.2E-06 45.7 10.7 104 148-289 6-109 (201)
265 TIGR02785 addA_Gpos recombinat 95.4 0.071 1.5E-06 63.7 10.4 124 131-272 1-126 (1232)
266 COG3973 Superfamily I DNA and 95.4 0.14 2.9E-06 54.3 10.8 91 115-212 188-285 (747)
267 COG1444 Predicted P-loop ATPas 95.4 0.11 2.4E-06 57.2 10.7 156 117-305 200-357 (758)
268 COG1484 DnaC DNA replication p 95.3 0.051 1.1E-06 52.8 7.3 50 145-208 104-153 (254)
269 PRK14955 DNA polymerase III su 95.3 0.19 4E-06 52.5 12.0 42 259-304 125-166 (397)
270 PRK14723 flhF flagellar biosyn 95.3 0.12 2.6E-06 57.5 10.9 131 146-316 185-318 (767)
271 PF05621 TniB: Bacterial TniB 95.3 0.077 1.7E-06 52.1 8.3 124 147-303 62-188 (302)
272 PRK08903 DnaA regulatory inact 95.3 0.11 2.4E-06 49.6 9.5 44 261-306 90-133 (227)
273 CHL00181 cbbX CbbX; Provisiona 95.3 0.32 6.9E-06 48.3 12.9 21 146-166 59-79 (287)
274 PRK06835 DNA replication prote 95.3 0.26 5.6E-06 49.8 12.4 27 145-172 182-208 (329)
275 PF00308 Bac_DnaA: Bacterial d 95.3 0.042 9.1E-07 52.2 6.4 108 148-308 36-144 (219)
276 PLN03025 replication factor C 95.3 0.19 4.1E-06 50.9 11.5 18 147-164 35-52 (319)
277 PF13177 DNA_pol3_delta2: DNA 95.2 0.12 2.5E-06 46.6 8.9 43 260-306 101-143 (162)
278 TIGR02881 spore_V_K stage V sp 95.2 0.11 2.4E-06 50.9 9.4 19 146-164 42-60 (261)
279 PRK00149 dnaA chromosomal repl 95.2 0.15 3.3E-06 54.3 11.1 48 260-309 210-259 (450)
280 TIGR00064 ftsY signal recognit 95.2 0.33 7.2E-06 47.7 12.6 57 260-316 153-214 (272)
281 PRK14087 dnaA chromosomal repl 95.2 0.19 4.2E-06 53.2 11.7 111 147-308 142-253 (450)
282 PRK12422 chromosomal replicati 95.2 0.11 2.3E-06 54.9 9.8 55 259-314 200-255 (445)
283 PRK12724 flagellar biosynthesi 95.1 0.49 1.1E-05 49.0 14.0 57 260-316 298-357 (432)
284 PRK12402 replication factor C 95.1 0.14 3E-06 52.2 10.3 17 148-164 38-54 (337)
285 PRK07993 DNA polymerase III su 95.1 0.28 6E-06 49.8 12.2 44 259-306 106-149 (334)
286 PRK05563 DNA polymerase III su 95.1 0.066 1.4E-06 58.3 8.2 43 259-305 117-159 (559)
287 PRK07003 DNA polymerase III su 95.1 0.19 4.1E-06 55.5 11.4 42 260-305 118-159 (830)
288 PRK14951 DNA polymerase III su 95.1 0.53 1.2E-05 51.6 15.0 43 260-306 123-165 (618)
289 PRK13894 conjugal transfer ATP 95.1 0.072 1.6E-06 53.5 7.8 67 121-200 124-191 (319)
290 PRK06645 DNA polymerase III su 95.1 0.17 3.6E-06 54.2 10.8 41 259-303 126-166 (507)
291 PRK07994 DNA polymerase III su 95.1 0.42 9.1E-06 52.5 14.0 40 260-303 118-157 (647)
292 PRK00411 cdc6 cell division co 95.0 0.16 3.4E-06 53.1 10.6 24 147-171 56-79 (394)
293 COG1219 ClpX ATP-dependent pro 95.0 0.038 8.2E-07 53.9 5.1 28 144-173 95-122 (408)
294 PRK14962 DNA polymerase III su 95.0 0.19 4.1E-06 53.5 11.0 43 259-305 115-157 (472)
295 PRK14954 DNA polymerase III su 95.0 0.26 5.6E-06 54.1 12.2 41 259-303 125-165 (620)
296 TIGR02760 TraI_TIGR conjugativ 95.0 0.17 3.6E-06 63.0 11.9 62 130-203 1018-1084(1960)
297 PRK14958 DNA polymerase III su 95.0 0.23 5E-06 53.4 11.7 19 148-166 40-58 (509)
298 PRK07940 DNA polymerase III su 95.0 0.11 2.4E-06 53.8 9.0 44 259-306 115-158 (394)
299 PHA02544 44 clamp loader, smal 95.0 0.23 4.9E-06 50.2 11.2 40 261-303 100-139 (316)
300 PRK14963 DNA polymerase III su 94.9 0.18 3.9E-06 54.1 10.6 42 259-304 114-155 (504)
301 PRK06090 DNA polymerase III su 94.9 0.33 7.2E-06 48.7 11.8 44 259-306 106-149 (319)
302 PF00004 AAA: ATPase family as 94.9 0.3 6.5E-06 41.8 10.3 15 149-163 1-15 (132)
303 PRK14088 dnaA chromosomal repl 94.9 0.17 3.7E-06 53.5 10.1 52 261-313 194-246 (440)
304 PRK14959 DNA polymerase III su 94.8 0.077 1.7E-06 57.7 7.5 44 259-306 117-160 (624)
305 PRK14950 DNA polymerase III su 94.8 0.35 7.5E-06 53.2 12.7 41 259-303 118-158 (585)
306 PRK09111 DNA polymerase III su 94.8 0.2 4.3E-06 54.8 10.6 41 259-303 130-170 (598)
307 COG0470 HolB ATPase involved i 94.7 0.3 6.5E-06 49.4 11.4 44 259-306 107-150 (325)
308 PRK14960 DNA polymerase III su 94.7 0.12 2.5E-06 56.4 8.5 20 148-167 39-58 (702)
309 PF06745 KaiC: KaiC; InterPro 94.7 0.11 2.4E-06 49.6 7.7 128 145-304 18-160 (226)
310 PRK08533 flagellar accessory p 94.7 0.32 7E-06 46.5 10.8 54 144-211 22-75 (230)
311 PHA03333 putative ATPase subun 94.7 0.73 1.6E-05 50.3 14.2 148 132-304 170-332 (752)
312 PRK09183 transposase/IS protei 94.7 0.25 5.4E-06 48.2 10.1 23 143-165 99-121 (259)
313 TIGR03499 FlhF flagellar biosy 94.6 0.094 2E-06 51.9 7.2 22 146-167 194-215 (282)
314 PRK14949 DNA polymerase III su 94.6 0.14 3.1E-06 57.5 9.2 43 260-306 118-160 (944)
315 PRK13833 conjugal transfer pro 94.6 0.13 2.9E-06 51.6 8.2 66 122-200 121-187 (323)
316 PRK07764 DNA polymerase III su 94.6 0.24 5.2E-06 56.2 11.1 21 148-168 39-59 (824)
317 PRK14961 DNA polymerase III su 94.6 0.37 8.1E-06 49.6 11.7 40 260-303 118-157 (363)
318 TIGR02880 cbbX_cfxQ probable R 94.5 0.38 8.1E-06 47.7 11.2 18 146-163 58-75 (284)
319 PTZ00293 thymidine kinase; Pro 94.5 0.35 7.7E-06 45.1 10.2 38 146-196 4-41 (211)
320 PRK05896 DNA polymerase III su 94.5 0.21 4.6E-06 54.1 9.8 43 260-306 118-160 (605)
321 TIGR00678 holB DNA polymerase 94.5 0.66 1.4E-05 42.8 12.1 41 259-303 94-134 (188)
322 PTZ00112 origin recognition co 94.4 0.63 1.4E-05 52.2 13.3 27 260-287 868-894 (1164)
323 COG2804 PulE Type II secretory 94.4 0.078 1.7E-06 55.3 6.2 42 133-175 243-286 (500)
324 PRK13342 recombination factor 94.4 0.34 7.4E-06 50.9 11.2 38 261-305 92-129 (413)
325 TIGR00362 DnaA chromosomal rep 94.4 0.26 5.6E-06 51.7 10.3 44 261-306 199-243 (405)
326 TIGR01425 SRP54_euk signal rec 94.4 0.6 1.3E-05 48.7 12.6 54 261-316 182-236 (429)
327 PRK12323 DNA polymerase III su 94.4 0.28 6.1E-06 53.4 10.4 42 259-304 122-163 (700)
328 TIGR03015 pepcterm_ATPase puta 94.3 0.13 2.8E-06 50.5 7.4 36 129-164 21-61 (269)
329 TIGR01073 pcrA ATP-dependent D 94.3 0.12 2.6E-06 58.6 7.9 71 130-211 3-73 (726)
330 COG1474 CDC6 Cdc6-related prot 94.2 0.59 1.3E-05 48.0 12.0 46 259-306 121-166 (366)
331 PRK14952 DNA polymerase III su 94.1 0.37 8E-06 52.5 10.8 43 259-305 116-158 (584)
332 COG4962 CpaF Flp pilus assembl 94.1 0.095 2.1E-06 52.0 5.7 63 127-203 153-216 (355)
333 TIGR00959 ffh signal recogniti 94.1 0.61 1.3E-05 48.8 11.9 21 148-168 101-121 (428)
334 PRK14965 DNA polymerase III su 94.0 0.39 8.4E-06 52.6 11.0 44 259-306 117-160 (576)
335 PRK10917 ATP-dependent DNA hel 94.0 0.14 3E-06 57.4 7.6 83 351-433 298-389 (681)
336 PRK14957 DNA polymerase III su 94.0 0.72 1.5E-05 49.9 12.6 19 149-167 41-59 (546)
337 PRK09112 DNA polymerase III su 93.9 0.46 9.9E-06 48.6 10.4 25 148-173 47-71 (351)
338 PF05496 RuvB_N: Holliday junc 93.8 0.3 6.6E-06 45.8 8.2 16 148-163 52-67 (233)
339 cd00561 CobA_CobO_BtuR ATP:cor 93.7 0.69 1.5E-05 41.2 10.0 52 259-312 93-146 (159)
340 PF13173 AAA_14: AAA domain 93.7 0.91 2E-05 38.9 10.7 40 261-306 61-100 (128)
341 PRK05986 cob(I)alamin adenolsy 93.6 0.39 8.4E-06 44.1 8.4 145 144-313 20-167 (191)
342 cd03115 SRP The signal recogni 93.6 1.4 3.1E-05 39.9 12.3 55 260-316 81-136 (173)
343 PRK14948 DNA polymerase III su 93.5 0.39 8.4E-06 52.9 9.8 41 259-303 119-159 (620)
344 TIGR02782 TrbB_P P-type conjug 93.5 0.33 7.2E-06 48.4 8.4 67 121-200 108-175 (299)
345 PHA03368 DNA packaging termina 93.4 0.8 1.7E-05 49.8 11.6 134 147-306 255-392 (738)
346 PRK14971 DNA polymerase III su 93.4 1 2.2E-05 49.6 12.9 41 259-303 119-159 (614)
347 PRK13341 recombination factor 93.4 0.46 9.9E-06 53.3 10.2 46 261-313 109-154 (725)
348 KOG0991 Replication factor C, 93.4 0.17 3.6E-06 47.3 5.5 18 147-164 49-66 (333)
349 PRK06647 DNA polymerase III su 93.4 0.46 9.9E-06 51.7 9.9 43 259-305 117-159 (563)
350 PRK04195 replication factor C 93.4 0.56 1.2E-05 50.4 10.6 18 146-163 39-56 (482)
351 PRK08691 DNA polymerase III su 93.3 0.21 4.5E-06 54.9 7.1 21 147-167 39-59 (709)
352 COG2256 MGS1 ATPase related to 93.3 0.33 7.2E-06 49.2 7.9 37 263-306 106-142 (436)
353 PF07728 AAA_5: AAA domain (dy 93.2 0.051 1.1E-06 47.4 2.0 15 148-162 1-15 (139)
354 KOG1133 Helicase of the DEAD s 93.2 0.12 2.6E-06 55.4 4.9 44 130-173 14-61 (821)
355 PRK14969 DNA polymerase III su 93.2 0.74 1.6E-05 49.8 11.1 30 259-292 117-146 (527)
356 PF01695 IstB_IS21: IstB-like 93.2 0.21 4.5E-06 45.8 5.9 49 141-203 42-90 (178)
357 TIGR03881 KaiC_arch_4 KaiC dom 93.1 0.89 1.9E-05 43.4 10.7 52 145-210 19-70 (229)
358 PRK07133 DNA polymerase III su 93.1 0.24 5.2E-06 54.8 7.4 44 259-306 116-159 (725)
359 PRK10867 signal recognition pa 93.1 0.81 1.8E-05 48.0 10.9 21 148-168 102-122 (433)
360 PRK11823 DNA repair protein Ra 93.0 0.63 1.4E-05 49.3 10.0 53 145-211 79-131 (446)
361 PRK08939 primosomal protein Dn 92.9 0.67 1.4E-05 46.4 9.7 26 146-172 156-181 (306)
362 PRK05580 primosome assembly pr 92.9 0.37 8E-06 54.0 8.7 76 359-435 186-266 (679)
363 TIGR00708 cobA cob(I)alamin ad 92.9 0.51 1.1E-05 42.6 7.9 53 259-313 95-149 (173)
364 PRK07471 DNA polymerase III su 92.9 1.5 3.2E-05 45.1 12.3 43 259-305 139-181 (365)
365 KOG0745 Putative ATP-dependent 92.8 0.13 2.9E-06 52.2 4.4 27 145-173 225-251 (564)
366 PRK14953 DNA polymerase III su 92.8 0.55 1.2E-05 50.2 9.4 41 259-303 117-157 (486)
367 COG4626 Phage terminase-like p 92.7 0.96 2.1E-05 47.9 10.7 147 130-302 60-223 (546)
368 TIGR02928 orc1/cdc6 family rep 92.7 0.52 1.1E-05 48.6 8.9 24 147-171 41-64 (365)
369 PRK14086 dnaA chromosomal repl 92.6 0.49 1.1E-05 51.4 8.7 49 259-308 375-424 (617)
370 TIGR03877 thermo_KaiC_1 KaiC d 92.6 0.24 5.2E-06 47.7 5.8 53 145-211 20-72 (237)
371 TIGR00643 recG ATP-dependent D 92.5 0.27 5.8E-06 54.7 6.8 82 352-433 273-363 (630)
372 TIGR00595 priA primosomal prot 92.4 0.4 8.6E-06 51.7 7.8 75 360-435 22-101 (505)
373 PRK13851 type IV secretion sys 92.4 0.22 4.8E-06 50.5 5.5 45 142-200 158-202 (344)
374 PRK08451 DNA polymerase III su 92.4 1.3 2.8E-05 47.7 11.5 42 259-304 115-156 (535)
375 PRK00440 rfc replication facto 92.4 1.6 3.4E-05 43.9 11.9 17 148-164 40-56 (319)
376 PRK05973 replicative DNA helic 92.4 0.44 9.6E-06 45.6 7.2 66 131-211 50-115 (237)
377 PRK10416 signal recognition pa 92.4 2.2 4.8E-05 42.9 12.6 57 260-316 195-256 (318)
378 KOG1513 Nuclear helicase MOP-3 92.3 0.16 3.4E-06 55.2 4.3 159 128-303 261-453 (1300)
379 PF02534 T4SS-DNA_transf: Type 92.2 0.17 3.8E-06 54.2 4.9 50 147-211 45-94 (469)
380 cd01126 TraG_VirD4 The TraG/Tr 92.2 0.12 2.5E-06 53.9 3.4 48 148-210 1-48 (384)
381 PRK07399 DNA polymerase III su 92.2 1.8 4E-05 43.5 11.8 59 239-303 103-161 (314)
382 PRK06067 flagellar accessory p 92.2 2.8 6.1E-05 40.1 12.7 53 145-211 24-76 (234)
383 cd00984 DnaB_C DnaB helicase C 92.2 1.4 3E-05 42.4 10.7 30 144-173 11-40 (242)
384 PRK13900 type IV secretion sys 92.1 0.42 9.2E-06 48.4 7.1 45 143-201 157-201 (332)
385 cd01121 Sms Sms (bacterial rad 92.0 1.1 2.3E-05 46.2 10.1 53 145-211 81-133 (372)
386 TIGR00580 mfd transcription-re 92.0 0.35 7.7E-06 55.7 7.2 81 353-433 490-579 (926)
387 TIGR02397 dnaX_nterm DNA polym 92.0 2.2 4.7E-05 43.8 12.5 41 259-303 115-155 (355)
388 KOG2170 ATPase of the AAA+ sup 92.0 0.57 1.2E-05 45.6 7.3 55 262-317 179-238 (344)
389 PRK06904 replicative DNA helic 91.9 2.4 5.3E-05 45.2 13.0 116 143-274 218-347 (472)
390 COG0466 Lon ATP-dependent Lon 91.5 0.49 1.1E-05 51.4 7.1 109 131-289 327-445 (782)
391 COG0593 DnaA ATPase involved i 91.5 1.1 2.3E-05 46.4 9.3 48 261-309 175-223 (408)
392 KOG2028 ATPase related to the 91.4 3 6.5E-05 41.9 11.7 108 147-316 163-270 (554)
393 PF05729 NACHT: NACHT domain 91.3 1.8 3.9E-05 38.4 9.8 25 148-173 2-26 (166)
394 KOG0344 ATP-dependent RNA heli 91.3 4.1 8.9E-05 43.3 13.2 97 155-271 366-466 (593)
395 COG0552 FtsY Signal recognitio 91.1 3.1 6.7E-05 41.4 11.6 133 148-316 141-281 (340)
396 KOG0738 AAA+-type ATPase [Post 91.0 2.7 5.9E-05 42.6 11.0 54 109-162 183-261 (491)
397 PRK06305 DNA polymerase III su 91.0 1.9 4.1E-05 45.7 10.9 41 259-303 119-159 (451)
398 PRK13897 type IV secretion sys 91.0 0.2 4.4E-06 54.7 3.7 50 147-211 159-208 (606)
399 COG2909 MalT ATP-dependent tra 90.9 0.87 1.9E-05 50.5 8.3 44 261-306 129-172 (894)
400 PRK11034 clpA ATP-dependent Cl 90.9 1.5 3.3E-05 49.4 10.6 18 146-163 207-224 (758)
401 KOG0741 AAA+-type ATPase [Post 90.8 3.8 8.3E-05 43.2 12.2 69 113-196 493-573 (744)
402 PRK10436 hypothetical protein; 90.6 0.43 9.4E-06 50.5 5.6 45 124-172 197-243 (462)
403 PRK14873 primosome assembly pr 90.4 0.96 2.1E-05 50.2 8.3 89 346-435 170-265 (665)
404 KOG2036 Predicted P-loop ATPas 90.4 7 0.00015 42.5 14.0 134 133-305 255-412 (1011)
405 PRK08506 replicative DNA helic 90.4 1.7 3.7E-05 46.5 9.9 114 145-274 191-315 (472)
406 COG2109 BtuR ATP:corrinoid ade 90.4 2.2 4.8E-05 38.7 9.0 141 149-314 31-175 (198)
407 PF02572 CobA_CobO_BtuR: ATP:c 90.2 5.2 0.00011 36.2 11.4 140 149-312 6-147 (172)
408 PF06733 DEAD_2: DEAD_2; Inte 90.2 0.18 4E-06 45.9 2.2 44 232-275 114-159 (174)
409 TIGR02524 dot_icm_DotB Dot/Icm 90.1 0.43 9.3E-06 48.9 5.0 27 145-172 133-159 (358)
410 PRK04328 hypothetical protein; 90.0 0.63 1.4E-05 45.2 5.9 53 145-211 22-74 (249)
411 PHA00729 NTP-binding motif con 89.9 3.3 7.1E-05 39.2 10.3 15 148-162 19-33 (226)
412 COG1221 PspF Transcriptional r 89.9 2.1 4.5E-05 44.2 9.6 22 142-163 97-118 (403)
413 cd01130 VirB11-like_ATPase Typ 89.9 0.42 9.1E-06 44.1 4.3 33 131-163 9-42 (186)
414 COG1618 Predicted nucleotide k 89.9 0.28 6.1E-06 43.2 2.9 117 147-288 6-129 (179)
415 PF03969 AFG1_ATPase: AFG1-lik 89.9 4.7 0.0001 41.4 12.2 111 146-308 62-172 (362)
416 PF12846 AAA_10: AAA-like doma 89.4 0.62 1.3E-05 46.3 5.5 43 146-201 1-43 (304)
417 PRK14970 DNA polymerase III su 89.4 5.6 0.00012 41.0 12.7 41 259-303 106-146 (367)
418 PRK13850 type IV secretion sys 89.2 0.35 7.6E-06 53.5 3.8 50 146-210 139-188 (670)
419 PF01443 Viral_helicase1: Vira 89.1 0.24 5.1E-06 47.5 2.2 23 413-435 184-206 (234)
420 PRK05564 DNA polymerase III su 89.1 3.4 7.4E-05 41.6 10.6 43 259-305 91-133 (313)
421 TIGR00631 uvrb excinuclease AB 89.1 6.6 0.00014 43.8 13.6 116 187-312 442-561 (655)
422 TIGR00767 rho transcription te 89.0 0.74 1.6E-05 47.3 5.6 28 144-172 166-193 (415)
423 COG3972 Superfamily I DNA and 89.0 0.79 1.7E-05 47.6 5.7 79 120-211 152-230 (660)
424 COG2255 RuvB Holliday junction 89.0 0.89 1.9E-05 44.0 5.8 18 147-164 53-70 (332)
425 PRK05917 DNA polymerase III su 88.9 3.1 6.7E-05 41.1 9.7 44 259-306 93-136 (290)
426 KOG0744 AAA+-type ATPase [Post 88.8 2.2 4.8E-05 42.1 8.4 113 146-277 177-325 (423)
427 TIGR02533 type_II_gspE general 88.8 0.98 2.1E-05 48.3 6.7 46 123-172 220-267 (486)
428 TIGR02012 tigrfam_recA protein 88.7 1.3 2.8E-05 44.4 7.1 29 145-173 54-82 (321)
429 TIGR02538 type_IV_pilB type IV 88.7 0.7 1.5E-05 50.6 5.6 46 123-172 294-341 (564)
430 PRK07004 replicative DNA helic 88.6 2.1 4.6E-05 45.5 9.1 26 144-169 211-236 (460)
431 cd01129 PulE-GspE PulE/GspE Th 88.6 1.2 2.6E-05 43.6 6.7 46 123-172 58-105 (264)
432 PF00265 TK: Thymidine kinase; 88.6 1.3 2.8E-05 40.4 6.4 35 149-196 4-38 (176)
433 COG0630 VirB11 Type IV secreto 88.6 0.98 2.1E-05 45.4 6.2 58 129-200 125-183 (312)
434 PF00437 T2SE: Type II/IV secr 88.5 0.58 1.2E-05 46.0 4.5 46 143-201 124-169 (270)
435 TIGR02639 ClpA ATP-dependent C 88.5 5.2 0.00011 45.4 12.6 19 146-164 203-221 (731)
436 TIGR02525 plasmid_TraJ plasmid 88.5 1.5 3.2E-05 45.1 7.5 28 145-173 148-175 (372)
437 TIGR03878 thermo_KaiC_2 KaiC d 88.5 1.3 2.8E-05 43.3 6.8 29 145-173 35-63 (259)
438 COG1198 PriA Primosomal protei 88.5 1.1 2.4E-05 49.8 7.0 91 342-433 223-319 (730)
439 PRK10689 transcription-repair 88.4 0.99 2.1E-05 53.4 6.9 73 361-433 647-728 (1147)
440 PRK08058 DNA polymerase III su 88.4 1.4 3E-05 44.7 7.2 42 259-304 108-149 (329)
441 PRK03992 proteasome-activating 88.3 2 4.3E-05 44.7 8.5 16 147-162 166-181 (389)
442 KOG0742 AAA+-type ATPase [Post 88.3 0.93 2E-05 46.0 5.6 16 147-162 385-400 (630)
443 PRK05748 replicative DNA helic 88.2 3.2 7E-05 44.1 10.2 26 144-169 201-226 (448)
444 KOG1513 Nuclear helicase MOP-3 88.1 0.64 1.4E-05 50.8 4.6 54 402-455 850-911 (1300)
445 PF03796 DnaB_C: DnaB-like hel 88.0 2.4 5.1E-05 41.4 8.5 141 145-303 18-179 (259)
446 PRK08840 replicative DNA helic 88.0 4.7 0.0001 43.0 11.1 42 128-169 199-240 (464)
447 TIGR03600 phage_DnaB phage rep 88.0 2.7 5.9E-05 44.3 9.4 43 128-170 176-218 (421)
448 cd03239 ABC_SMC_head The struc 88.0 0.74 1.6E-05 42.1 4.5 43 259-302 114-156 (178)
449 KOG2227 Pre-initiation complex 87.9 4.7 0.0001 41.9 10.4 18 145-162 174-191 (529)
450 KOG0739 AAA+-type ATPase [Post 87.9 8.2 0.00018 37.8 11.4 115 140-310 155-283 (439)
451 PF03237 Terminase_6: Terminas 87.8 12 0.00026 38.2 14.1 142 150-316 1-151 (384)
452 cd01125 repA Hexameric Replica 87.6 7 0.00015 37.5 11.3 46 148-194 3-48 (239)
453 PHA00350 putative assembly pro 87.6 2 4.3E-05 44.4 7.7 26 149-174 4-30 (399)
454 TIGR03743 SXT_TraD conjugative 87.6 1.6 3.4E-05 48.3 7.5 56 145-213 175-232 (634)
455 PRK09354 recA recombinase A; P 87.5 1.5 3.3E-05 44.4 6.8 44 145-201 59-102 (349)
456 TIGR03819 heli_sec_ATPase heli 87.5 1.5 3.3E-05 44.5 6.9 64 121-200 154-218 (340)
457 PRK13764 ATPase; Provisional 87.5 1.2 2.7E-05 48.5 6.5 27 145-172 256-282 (602)
458 TIGR00763 lon ATP-dependent pr 87.5 2 4.4E-05 49.0 8.6 18 145-162 346-363 (775)
459 PRK09087 hypothetical protein; 87.5 2.3 4.9E-05 40.6 7.7 39 264-306 90-128 (226)
460 TIGR03346 chaperone_ClpB ATP-d 87.4 7 0.00015 45.2 12.9 19 146-164 194-212 (852)
461 TIGR00635 ruvB Holliday juncti 87.4 1.1 2.3E-05 44.9 5.7 17 147-163 31-47 (305)
462 PRK05818 DNA polymerase III su 87.4 1.2 2.6E-05 43.0 5.7 42 260-305 87-128 (261)
463 KOG2543 Origin recognition com 87.2 8 0.00017 39.3 11.3 47 260-308 114-162 (438)
464 PRK13876 conjugal transfer cou 87.2 0.56 1.2E-05 51.9 3.7 50 146-210 144-193 (663)
465 PRK10263 DNA translocase FtsK; 87.1 3.1 6.7E-05 48.9 9.6 26 147-172 1011-1036(1355)
466 COG1122 CbiO ABC-type cobalt t 87.0 2.5 5.5E-05 40.4 7.7 31 261-291 156-186 (235)
467 COG0467 RAD55 RecA-superfamily 87.0 1.2 2.5E-05 43.6 5.6 54 145-212 22-75 (260)
468 PF01637 Arch_ATPase: Archaeal 87.0 0.56 1.2E-05 44.5 3.3 58 244-306 105-167 (234)
469 COG3267 ExeA Type II secretory 87.0 8 0.00017 37.1 10.7 32 141-173 45-77 (269)
470 PHA03372 DNA packaging termina 86.9 8.4 0.00018 41.7 12.0 126 147-304 203-337 (668)
471 TIGR02767 TraG-Ti Ti-type conj 86.7 0.65 1.4E-05 51.0 3.9 49 147-210 212-260 (623)
472 COG1110 Reverse gyrase [DNA re 86.7 1.4 3E-05 49.9 6.3 58 362-419 124-191 (1187)
473 TIGR00665 DnaB replicative DNA 86.6 3.6 7.7E-05 43.6 9.4 27 145-171 194-220 (434)
474 PRK04841 transcriptional regul 86.6 5.1 0.00011 46.8 11.6 44 261-306 121-164 (903)
475 PRK13822 conjugal transfer cou 86.4 0.62 1.3E-05 51.5 3.6 50 146-210 224-273 (641)
476 PHA00012 I assembly protein 86.4 2.6 5.6E-05 42.0 7.4 26 149-174 4-29 (361)
477 KOG0058 Peptide exporter, ABC 86.4 2.4 5.1E-05 46.5 7.7 41 259-302 620-660 (716)
478 TIGR03754 conj_TOL_TraD conjug 86.3 2.2 4.7E-05 46.9 7.6 56 145-213 179-236 (643)
479 TIGR03880 KaiC_arch_3 KaiC dom 86.3 1.6 3.6E-05 41.4 6.1 53 145-211 15-67 (224)
480 TIGR02868 CydC thiol reductant 86.3 1.2 2.7E-05 48.4 5.9 18 144-161 359-376 (529)
481 PRK04537 ATP-dependent RNA hel 86.1 3.4 7.3E-05 45.4 9.1 73 188-270 258-334 (572)
482 cd03276 ABC_SMC6_euk Eukaryoti 85.9 7 0.00015 36.4 9.9 48 259-306 129-177 (198)
483 TIGR02640 gas_vesic_GvpN gas v 85.7 0.79 1.7E-05 44.9 3.6 26 138-163 13-38 (262)
484 COG0210 UvrD Superfamily I DNA 85.6 2.3 5E-05 47.7 7.7 71 131-212 2-72 (655)
485 TIGR03345 VI_ClpV1 type VI sec 85.4 3.7 8E-05 47.3 9.2 16 148-163 598-613 (852)
486 cd00267 ABC_ATPase ABC (ATP-bi 85.3 2 4.2E-05 38.3 5.7 44 260-305 97-140 (157)
487 TIGR01243 CDC48 AAA family ATP 85.3 5.6 0.00012 45.2 10.6 18 145-162 211-228 (733)
488 cd01393 recA_like RecA is a b 85.2 3.2 7E-05 39.4 7.5 27 145-171 18-44 (226)
489 PRK09376 rho transcription ter 84.9 2 4.3E-05 44.1 6.1 29 144-173 167-195 (416)
490 cd01127 TrwB Bacterial conjuga 84.9 0.93 2E-05 47.6 3.9 50 140-202 36-85 (410)
491 KOG3089 Predicted DEAD-box-con 84.9 0.92 2E-05 41.7 3.2 34 236-269 195-228 (271)
492 PRK08006 replicative DNA helic 84.8 13 0.00029 39.7 12.5 115 145-274 223-349 (471)
493 PRK13880 conjugal transfer cou 84.8 0.72 1.6E-05 51.1 3.1 47 146-207 175-221 (636)
494 KOG2004 Mitochondrial ATP-depe 84.8 7.2 0.00016 42.8 10.2 94 131-274 415-518 (906)
495 KOG2228 Origin recognition com 84.7 14 0.0003 37.0 11.3 58 247-305 123-180 (408)
496 PF13555 AAA_29: P-loop contai 84.4 0.87 1.9E-05 33.4 2.4 18 145-162 22-39 (62)
497 TIGR02788 VirB11 P-type DNA tr 84.3 1.7 3.6E-05 43.7 5.3 20 143-162 141-160 (308)
498 KOG0733 Nuclear AAA ATPase (VC 84.2 3.6 7.8E-05 44.2 7.6 49 260-308 603-659 (802)
499 TIGR03345 VI_ClpV1 type VI sec 84.1 14 0.0003 42.8 13.0 28 136-163 192-225 (852)
500 TIGR00602 rad24 checkpoint pro 83.9 5 0.00011 44.3 9.0 48 105-163 77-127 (637)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-79 Score=584.55 Aligned_cols=369 Identities=34% Similarity=0.521 Sum_probs=344.7
Q ss_pred CCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCC
Q 008207 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (574)
Q Consensus 105 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~ 184 (574)
.....+|.++++.++++++++..||..||+||+++||.++.|+|+|+.|+||||||.+|++||++++...+.
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~-------- 128 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK-------- 128 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC--------
Confidence 445567999999999999999999999999999999999999999999999999999999999999998643
Q ss_pred CCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHh-cCCccCCCce
Q 008207 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE-RGNIDLSSLK 263 (574)
Q Consensus 185 ~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~-~~~~~l~~~~ 263 (574)
.+++|||+||||||.||.+.|+.++...|+++.++.||.+...|...+...+||+|||||||++|+. .+.+.+..++
T Consensus 129 --~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk 206 (476)
T KOG0330|consen 129 --LFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLK 206 (476)
T ss_pred --CceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhH
Confidence 4789999999999999999999999999999999999999999999999999999999999999998 5788999999
Q ss_pred EEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEe
Q 008207 264 FRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343 (574)
Q Consensus 264 ~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 343 (574)
++|+||||+++++.|.+.+..|+..+|. .+|+++||||||..+..+.+-.+ ..+..+... ..+.+..++.|.|+.
T Consensus 207 ~LVlDEADrlLd~dF~~~ld~ILk~ip~--erqt~LfsATMt~kv~kL~rasl-~~p~~v~~s--~ky~tv~~lkQ~ylf 281 (476)
T KOG0330|consen 207 FLVLDEADRLLDMDFEEELDYILKVIPR--ERQTFLFSATMTKKVRKLQRASL-DNPVKVAVS--SKYQTVDHLKQTYLF 281 (476)
T ss_pred HHhhchHHhhhhhhhHHHHHHHHHhcCc--cceEEEEEeecchhhHHHHhhcc-CCCeEEecc--chhcchHHhhhheEe
Confidence 9999999999999999999999999997 89999999999999999987776 556555544 446888899999999
Q ss_pred CCchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccc
Q 008207 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419 (574)
Q Consensus 344 ~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~ 419 (574)
++...|...|.++++.. .+..+||||++...++.++-+|+ .+..+||.|+|..|.-.++.|++|.+.||+|||++
T Consensus 282 v~~k~K~~yLV~ll~e~-~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVa 360 (476)
T KOG0330|consen 282 VPGKDKDTYLVYLLNEL-AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVA 360 (476)
T ss_pred ccccccchhHHHHHHhh-cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchh
Confidence 99999999999999976 67999999999999999999887 67789999999999999999999999999999999
Q ss_pred cccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHHhCCcceecCCCCH
Q 008207 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQP 489 (574)
Q Consensus 420 ~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~~~~ 489 (574)
+||+|+|.|++|||||+|.+..+||||+||+||+|++|.+|+|++.. ...+.+||..+|.+.+.+..+..
T Consensus 361 SRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~~ 431 (476)
T KOG0330|consen 361 SRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDKN 431 (476)
T ss_pred cccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcchH
Confidence 99999999999999999999999999999999999999999999997 78899999999999888776653
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.3e-79 Score=618.31 Aligned_cols=351 Identities=45% Similarity=0.719 Sum_probs=331.8
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCe
Q 008207 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPS 189 (574)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~ 189 (574)
.|+.++|++.+..+|+..||..|||||.++||.++.|+|+++.|.|||||||+|++|++.++...... .....+|+
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~----~~~~~~P~ 167 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGK----LSRGDGPI 167 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhcccc----ccCCCCCe
Confidence 89999999999999999999999999999999999999999999999999999999999999874221 23467899
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecC
Q 008207 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269 (574)
Q Consensus 190 ~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDE 269 (574)
+|||+||||||.||..++..++...++++.|+|||.+...|.+.+.++++|+|+|||||+++++.+.++|+++.|+||||
T Consensus 168 vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDE 247 (519)
T KOG0331|consen 168 VLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDE 247 (519)
T ss_pred EEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhh
Q 008207 270 ADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349 (574)
Q Consensus 270 ah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~ 349 (574)
||+|+++||..++..|+..++.. ..|++++|||+|.+++.++..|+. ++..+.+.......+..++.|+...|+...|
T Consensus 248 ADrMldmGFe~qI~~Il~~i~~~-~rQtlm~saTwp~~v~~lA~~fl~-~~~~i~ig~~~~~~a~~~i~qive~~~~~~K 325 (519)
T KOG0331|consen 248 ADRMLDMGFEPQIRKILSQIPRP-DRQTLMFSATWPKEVRQLAEDFLN-NPIQINVGNKKELKANHNIRQIVEVCDETAK 325 (519)
T ss_pred HHhhhccccHHHHHHHHHhcCCC-cccEEEEeeeccHHHHHHHHHHhc-CceEEEecchhhhhhhcchhhhhhhcCHHHH
Confidence 99999999999999999999653 459999999999999999999996 8888888766567888999999999999999
Q ss_pred hhhhhHHHHhhc--CCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccC
Q 008207 350 SQVIPDIIRCYS--SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423 (574)
Q Consensus 350 ~~~l~~ll~~~~--~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gl 423 (574)
...|..+|.... .++++||||+|+..|+.|...|+ .+..|||+.+|.+|..+++.|++|++.||||||+|+|||
T Consensus 326 ~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGL 405 (519)
T KOG0331|consen 326 LRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGL 405 (519)
T ss_pred HHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccC
Confidence 999999998874 66799999999999999999998 477999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 424 di~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
|||+|++|||||+|.+.++|+||+|||||+|+.|.+++|++..
T Consensus 406 Di~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~ 448 (519)
T KOG0331|consen 406 DVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSD 448 (519)
T ss_pred CCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHH
Confidence 9999999999999999999999999999999999999999987
No 3
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-76 Score=579.05 Aligned_cols=367 Identities=37% Similarity=0.522 Sum_probs=330.2
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 008207 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (574)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (574)
..+|.+++||..+++++..+||..|||||..+||..+.|+|++.||.||||||.||.+|+|+++...+.+ ...
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~-------~~~ 252 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK-------VAA 252 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc-------Ccc
Confidence 3489999999999999999999999999999999999999999999999999999999999999887653 345
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhc-CCccCCCceEEE
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLSSLKFRV 266 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~-~~~~l~~~~~lV 266 (574)
.|+|||+||||||.|++...++++.++.+.++.+.||.+...|...|+..|||||+|||||.|||.+ ..++++++.++|
T Consensus 253 TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLv 332 (691)
T KOG0338|consen 253 TRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLV 332 (691)
T ss_pred eeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999987 468999999999
Q ss_pred ecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCC-
Q 008207 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS- 345 (574)
Q Consensus 267 lDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~- 345 (574)
+||||+||+.||.+++..|+..+++ ++|+++|||||+..+..++..-+ +.|..|.+.+.. .+...+.|-++...
T Consensus 333 lDEADRMLeegFademnEii~lcpk--~RQTmLFSATMteeVkdL~slSL-~kPvrifvd~~~--~~a~~LtQEFiRIR~ 407 (691)
T KOG0338|consen 333 LDEADRMLEEGFADEMNEIIRLCPK--NRQTMLFSATMTEEVKDLASLSL-NKPVRIFVDPNK--DTAPKLTQEFIRIRP 407 (691)
T ss_pred echHHHHHHHHHHHHHHHHHHhccc--cccceeehhhhHHHHHHHHHhhc-CCCeEEEeCCcc--ccchhhhHHHheecc
Confidence 9999999999999999999999998 88999999999999999999999 567777665544 55666777666543
Q ss_pred --chhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccc
Q 008207 346 --SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419 (574)
Q Consensus 346 --~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~ 419 (574)
...+...+..++... ...++|||+.|++.|.++.-+|- .+.-+||.++|.+|...++.|++++++||||||+|
T Consensus 408 ~re~dRea~l~~l~~rt-f~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvA 486 (691)
T KOG0338|consen 408 KREGDREAMLASLITRT-FQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVA 486 (691)
T ss_pred ccccccHHHHHHHHHHh-cccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechh
Confidence 344666777777655 46799999999999999988775 78899999999999999999999999999999999
Q ss_pred cccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHH---hCCcceecCCC
Q 008207 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERE---SGVKFEHISAP 487 (574)
Q Consensus 420 ~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~---~~~~~~~~~~~ 487 (574)
+|||||++|..||||++|.+.+.|+||+|||+|+|+.|.+++|+... ...++.|-+. .+.++....+|
T Consensus 487 sRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~~~a~~klk~R~i~ 558 (691)
T KOG0338|consen 487 SRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSSTKAGSKLKNRNIP 558 (691)
T ss_pred hccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhhhhcccchhhcCCC
Confidence 99999999999999999999999999999999999999999999998 6777777766 45555554444
No 4
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2.2e-73 Score=557.89 Aligned_cols=371 Identities=34% Similarity=0.484 Sum_probs=343.0
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 008207 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (574)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (574)
...|+.+.|++..++++.++||..+|++|+.+|+.++.|+|+++.|.||||||+||++|+++.+.+.+... ..+
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~------r~~ 154 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP------RNG 154 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC------CCC
Confidence 35678899999999999999999999999999999999999999999999999999999999999876643 245
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCC-CceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcC-CccCCCceEE
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG-NIDLSSLKFR 265 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~-~~~l~~~~~l 265 (574)
..+||+|||||||.|++.+.+.+..+. ++.+..+.||.+.......+..+++|+|+|||||+||+++. .+..++++++
T Consensus 155 ~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~l 234 (543)
T KOG0342|consen 155 TGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCL 234 (543)
T ss_pred eeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhcccee
Confidence 679999999999999999999998888 99999999999999999999889999999999999999884 4567788999
Q ss_pred EecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCC
Q 008207 266 VLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (574)
Q Consensus 266 VlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 345 (574)
|+||||+++++||.+++..|+..+|. .+|+++||||.|+.|.++++..+..++.++++.......+...+.|.|+.++
T Consensus 235 vlDEADrlLd~GF~~di~~Ii~~lpk--~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~ 312 (543)
T KOG0342|consen 235 VLDEADRLLDIGFEEDVEQIIKILPK--QRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAP 312 (543)
T ss_pred EeecchhhhhcccHHHHHHHHHhccc--cceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEecc
Confidence 99999999999999999999999997 8899999999999999999999988899999999888899999999999999
Q ss_pred chhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccc
Q 008207 346 SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421 (574)
Q Consensus 346 ~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~ 421 (574)
...++.++..+++......++||||+|...+..++.+|. .|..+||+++|..|..+...|++.+.-|||||||+||
T Consensus 313 ~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaAR 392 (543)
T KOG0342|consen 313 SDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAAR 392 (543)
T ss_pred ccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhc
Confidence 999999999999887666999999999999999999998 6788999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHHhCCcceecCCCCH
Q 008207 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQP 489 (574)
Q Consensus 422 Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~~~~ 489 (574)
|+|+|+|++||+||+|.++++||||+|||||.|..|.+++|+.|. ..+++.+. ..++++.+.|..
T Consensus 393 GlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK---~lpl~~~e~~~~ 458 (543)
T KOG0342|consen 393 GLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK---KLPLEEFEFPPL 458 (543)
T ss_pred cCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh---hCCCcccCCCCC
Confidence 999999999999999999999999999999999999999999999 55555555 566777666654
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.4e-73 Score=601.12 Aligned_cols=371 Identities=38% Similarity=0.628 Sum_probs=339.3
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 008207 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (574)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (574)
..|+++++++.++++|.+.||..|||||.++||.++.|+|++++|+||||||+||++|+++.+..... ....
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~--------~~~~ 100 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVE--------RKYV 100 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccc--------cCCC
Confidence 67999999999999999999999999999999999999999999999999999999999999774310 1111
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCCC-CceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEe
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVl 267 (574)
.+||++||||||.|+++++..++.+. ++++.+++||.++..|...+..++||||+|||||++|+.++.++++.++++|+
T Consensus 101 ~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVl 180 (513)
T COG0513 101 SALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVL 180 (513)
T ss_pred ceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEe
Confidence 19999999999999999999999988 79999999999999999999989999999999999999999999999999999
Q ss_pred cCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCch
Q 008207 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (574)
Q Consensus 268 DEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 347 (574)
||||+|+++||.+++..|+..++. .+|+++||||+|..+..+++.++. ++..+.+.......+...+.|.++.+...
T Consensus 181 DEADrmLd~Gf~~~i~~I~~~~p~--~~qtllfSAT~~~~i~~l~~~~l~-~p~~i~v~~~~~~~~~~~i~q~~~~v~~~ 257 (513)
T COG0513 181 DEADRMLDMGFIDDIEKILKALPP--DRQTLLFSATMPDDIRELARRYLN-DPVEIEVSVEKLERTLKKIKQFYLEVESE 257 (513)
T ss_pred ccHhhhhcCCCHHHHHHHHHhCCc--ccEEEEEecCCCHHHHHHHHHHcc-CCcEEEEccccccccccCceEEEEEeCCH
Confidence 999999999999999999999998 789999999999999999999995 77777777555445788999999999987
Q ss_pred h-hhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEecccccc
Q 008207 348 A-RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (574)
Q Consensus 348 ~-~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~G 422 (574)
. +...|..++.... ..++||||+|+..++.|+..|. .+..+||+|+|.+|.++++.|++|+++||||||+++||
T Consensus 258 ~~k~~~L~~ll~~~~-~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRG 336 (513)
T COG0513 258 EEKLELLLKLLKDED-EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARG 336 (513)
T ss_pred HHHHHHHHHHHhcCC-CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhcc
Confidence 6 9999999998763 4589999999999999999887 68899999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC--chHHHHHHHHhCCcce-ecCCCCHHH
Q 008207 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERESGVKFE-HISAPQPAD 491 (574)
Q Consensus 423 ldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~--~~~~~~i~~~~~~~~~-~~~~~~~~~ 491 (574)
||||+|++|||||+|.+++.|+||+|||||+|+.|.+++|+.+. ...+..+++.++..++ ....|..+.
T Consensus 337 iDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~~~~ 408 (513)
T COG0513 337 LDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDEP 408 (513)
T ss_pred CCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCcchh
Confidence 99999999999999999999999999999999999999999975 6778999999877766 455555433
No 6
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-71 Score=523.44 Aligned_cols=371 Identities=35% Similarity=0.482 Sum_probs=339.0
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 008207 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (574)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (574)
...|+.+||++|+.+.|+.+|+..|||+|..+||.|+.|+|+|.+|.||||||++|.+|+++++...+. +
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~----------g 75 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPY----------G 75 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCC----------c
Confidence 457999999999999999999999999999999999999999999999999999999999999988753 4
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcC----CccCCCce
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG----NIDLSSLK 263 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~----~~~l~~~~ 263 (574)
..+||++||||||.|+.+.|..+++..++++.+++||++.-.|...+...+||+|+||||+.+++..+ .+.+.+++
T Consensus 76 iFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlk 155 (442)
T KOG0340|consen 76 IFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLK 155 (442)
T ss_pred ceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhcee
Confidence 57999999999999999999999999999999999999999999999999999999999999999775 35588999
Q ss_pred EEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEe
Q 008207 264 FRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343 (574)
Q Consensus 264 ~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 343 (574)
++|+||||+|++.+|.+++..+...+|. ++|+++||||+++.+..+........ ....+...+...+...+.+.|+.
T Consensus 156 flVlDEADrvL~~~f~d~L~~i~e~lP~--~RQtLlfSATitd~i~ql~~~~i~k~-~a~~~e~~~~vstvetL~q~yI~ 232 (442)
T KOG0340|consen 156 FLVLDEADRVLAGCFPDILEGIEECLPK--PRQTLLFSATITDTIKQLFGCPITKS-IAFELEVIDGVSTVETLYQGYIL 232 (442)
T ss_pred eEEecchhhhhccchhhHHhhhhccCCC--ccceEEEEeehhhHHHHhhcCCcccc-cceEEeccCCCCchhhhhhheee
Confidence 9999999999999999999999999998 68999999999998887766554321 22333333445777889999999
Q ss_pred CCchhhhhhhhHHHHhhcC--CCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEec
Q 008207 344 CSSSARSQVIPDIIRCYSS--GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (574)
Q Consensus 344 ~~~~~~~~~l~~ll~~~~~--~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd 417 (574)
++...+..++..++..+.. .+.++||+|+..+++.|+..|. .+..+||.|+|.+|...+.+|+.+..++|||||
T Consensus 233 ~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTD 312 (442)
T KOG0340|consen 233 VSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATD 312 (442)
T ss_pred cchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEec
Confidence 9999999999999998765 7899999999999999999987 677899999999999999999999999999999
Q ss_pred cccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHHhCCcceecCCCCHHH
Q 008207 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPAD 491 (574)
Q Consensus 418 ~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~ 491 (574)
+|+||+|||.|++|||||+|+++.+|+||+|||+|+|+.|.+++++++. ...+..||+.+|.++.+++......
T Consensus 313 VAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~~~~~ 387 (442)
T KOG0340|consen 313 VASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKVQRTV 387 (442)
T ss_pred hhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccccchhh
Confidence 9999999999999999999999999999999999999999999999988 8899999999999999888755433
No 7
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-72 Score=555.54 Aligned_cols=387 Identities=32% Similarity=0.482 Sum_probs=330.0
Q ss_pred CCCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCccc-
Q 008207 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK- 181 (574)
Q Consensus 104 ~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~-~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~- 181 (574)
...+...|..|.++..++++|..+||..|||||..+||++..| .|+++.|.||||||+||.+||++.+.........-
T Consensus 176 ~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~ 255 (731)
T KOG0347|consen 176 SKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELS 255 (731)
T ss_pred cccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhh
Confidence 3345577899999999999999999999999999999999988 89999999999999999999999766543321110
Q ss_pred CCCCCCC--eEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCc--
Q 008207 182 TGYGRAP--SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI-- 257 (574)
Q Consensus 182 ~~~~~~~--~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~-- 257 (574)
.....++ .+||++||||||.||...+..++..+++++..++||.....|.+.++..++|||+||||||.++..++.
T Consensus 256 ~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 256 NTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred hHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhh
Confidence 0112344 499999999999999999999999999999999999999999999999999999999999999988665
Q ss_pred -cCCCceEEEecCchhhhcCCcHHHHHHHHHhccC---ccCceEEEEeccCchh---------------------HHHHH
Q 008207 258 -DLSSLKFRVLDEADEMLRMGFVEDVELILGKVED---ANKVQTLLFSATLPSW---------------------VKHIS 312 (574)
Q Consensus 258 -~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~---~~~~q~ll~SAT~~~~---------------------~~~~~ 312 (574)
+++++++||+||||+|++.|+++.+..|+..+.. ...+|+++||||++-. +..+.
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lm 415 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLM 415 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHH
Confidence 5788999999999999999999999999998862 2468999999997531 22233
Q ss_pred HH-hcccCCeEEEEecCcccccccceeEEEEeCCchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCc
Q 008207 313 TK-FLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GAR 387 (574)
Q Consensus 313 ~~-~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~ 387 (574)
+. .++..+.+|++.... .+...+....+.|+...+...|+++|..+ +|++|||||+.+.+.+|+.+|. ...
T Consensus 416 k~ig~~~kpkiiD~t~q~--~ta~~l~Es~I~C~~~eKD~ylyYfl~ry--PGrTlVF~NsId~vKRLt~~L~~L~i~p~ 491 (731)
T KOG0347|consen 416 KKIGFRGKPKIIDLTPQS--ATASTLTESLIECPPLEKDLYLYYFLTRY--PGRTLVFCNSIDCVKRLTVLLNNLDIPPL 491 (731)
T ss_pred HHhCccCCCeeEecCcch--hHHHHHHHHhhcCCccccceeEEEEEeec--CCceEEEechHHHHHHHHHHHhhcCCCCc
Confidence 22 234566888876654 66667777778898888888898888775 5899999999999999999998 556
Q ss_pred cccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-
Q 008207 388 ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR- 466 (574)
Q Consensus 388 ~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~- 466 (574)
.+|+.|.|++|.+.+++|++..-.||||||+||||||||+|.|||||.+|.+.+.|+||+|||+|++..|.+++|+.|.
T Consensus 492 ~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 492 PLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQE 571 (731)
T ss_pred hhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chHHHHHHHHhCCcceecCCCCHHHHHH
Q 008207 467 KSSVSKIERESGVKFEHISAPQPADIAK 494 (574)
Q Consensus 467 ~~~~~~i~~~~~~~~~~~~~~~~~~i~~ 494 (574)
...+.++.+.+..+.+--..|-.+.+..
T Consensus 572 ~~~~~KL~ktL~k~~dlpifPv~~~~m~ 599 (731)
T KOG0347|consen 572 VGPLKKLCKTLKKKEDLPIFPVETDIMD 599 (731)
T ss_pred hHHHHHHHHHHhhccCCCceeccHHHHH
Confidence 7778888887765544333455555544
No 8
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7e-72 Score=509.90 Aligned_cols=369 Identities=30% Similarity=0.470 Sum_probs=341.3
Q ss_pred CCCCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccC
Q 008207 103 GESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKT 182 (574)
Q Consensus 103 ~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~ 182 (574)
........|+++||++++++.+...||+.|+.+|+.+|+.|+.|+|+|++|+.|+|||.+|.+.+++.+.-.
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~-------- 92 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS-------- 92 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc--------
Confidence 344556789999999999999999999999999999999999999999999999999999999999877654
Q ss_pred CCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCc
Q 008207 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSL 262 (574)
Q Consensus 183 ~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~ 262 (574)
.+..++||++||||||.|+.+.+..++.+.++.+..+.||.+.....+.+..+.+++.+||||+++++.++.+..+.+
T Consensus 93 --~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~v 170 (400)
T KOG0328|consen 93 --VRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAV 170 (400)
T ss_pred --cceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccce
Confidence 345689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEE
Q 008207 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (574)
Q Consensus 263 ~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 342 (574)
+++|+||||.|++.||.+++-.|+.++|+ ..|++++|||+|..+.++.+.|+ .+|..+-+..++ .+...++++++
T Consensus 171 kmlVLDEaDemL~kgfk~Qiydiyr~lp~--~~Qvv~~SATlp~eilemt~kfm-tdpvrilvkrde--ltlEgIKqf~v 245 (400)
T KOG0328|consen 171 KMLVLDEADEMLNKGFKEQIYDIYRYLPP--GAQVVLVSATLPHEILEMTEKFM-TDPVRILVKRDE--LTLEGIKQFFV 245 (400)
T ss_pred eEEEeccHHHHHHhhHHHHHHHHHHhCCC--CceEEEEeccCcHHHHHHHHHhc-CCceeEEEecCC--Cchhhhhhhee
Confidence 99999999999999999999999999987 78999999999999999999999 677666555443 66677999999
Q ss_pred eCCchh-hhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEec
Q 008207 343 PCSSSA-RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (574)
Q Consensus 343 ~~~~~~-~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd 417 (574)
.+..+. |.+.|+++...+ .-..++|||||+..++.|.+.++ .+..+||+|+|++|..+++.|+.|+.+|||+||
T Consensus 246 ~ve~EewKfdtLcdLYd~L-tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTD 324 (400)
T KOG0328|consen 246 AVEKEEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTD 324 (400)
T ss_pred eechhhhhHhHHHHHhhhh-ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEec
Confidence 887766 999999998876 45789999999999999999887 678899999999999999999999999999999
Q ss_pred cccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHHhCCcceecCCC
Q 008207 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487 (574)
Q Consensus 418 ~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~~ 487 (574)
+.+||+|+|.|++|||||+|.+.+.|+||+||.||.|++|.++.|+... ...++.||++++..+.+++..
T Consensus 325 VwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~n 395 (400)
T KOG0328|consen 325 VWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMN 395 (400)
T ss_pred hhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccch
Confidence 9999999999999999999999999999999999999999999999988 778899999999999887754
No 9
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.1e-70 Score=528.58 Aligned_cols=409 Identities=30% Similarity=0.449 Sum_probs=343.8
Q ss_pred CcccccC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCC
Q 008207 109 NAVSRFR--ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (574)
Q Consensus 109 ~~~~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (574)
..|++++ |++++++++...||..+||+|..+||.++.++||++.|+||||||+||++|+++.+........ ..
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~-----~~ 78 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTP-----PG 78 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCC-----cc
Confidence 3456554 6699999999999999999999999999999999999999999999999999999965443221 12
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhCC-CCceEEEEeCCcchHHHHHHh-cCCCcEEEEChHHHHHhHhcCC--ccCCCc
Q 008207 187 APSVLVLLPTRELAKQVHEDFDVYGGA-VGLTSCCLYGGAPYHAQEFKL-KKGIDVVIGTPGRIKDHIERGN--IDLSSL 262 (574)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l-~~~~~IlV~Tp~~l~~~l~~~~--~~l~~~ 262 (574)
.+-+|||+||||||.||.+.+..|... .++++.+++||.+.......+ ..+++|+|||||||.+++.+.. +++.++
T Consensus 79 ~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsL 158 (567)
T KOG0345|consen 79 QVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSL 158 (567)
T ss_pred ceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhcccccc
Confidence 456999999999999999999888766 789999999999888777665 4678999999999999998854 455699
Q ss_pred eEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEE
Q 008207 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (574)
Q Consensus 263 ~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 342 (574)
.+||+||||+++++||...+..|+..+|+ .+++=+||||....+..+.+..+ .++..+.+.......++..+...|+
T Consensus 159 e~LVLDEADrLldmgFe~~~n~ILs~LPK--QRRTGLFSATq~~~v~dL~raGL-RNpv~V~V~~k~~~~tPS~L~~~Y~ 235 (567)
T KOG0345|consen 159 EILVLDEADRLLDMGFEASVNTILSFLPK--QRRTGLFSATQTQEVEDLARAGL-RNPVRVSVKEKSKSATPSSLALEYL 235 (567)
T ss_pred ceEEecchHhHhcccHHHHHHHHHHhccc--ccccccccchhhHHHHHHHHhhc-cCceeeeecccccccCchhhcceee
Confidence 99999999999999999999999999999 77999999999999999999999 6788887777665568888999999
Q ss_pred eCCchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC------CCccccccCCHHHHHHHHHHHhCCCccEEEEe
Q 008207 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416 (574)
Q Consensus 343 ~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT 416 (574)
.|....+...+.+++... ...++|||++|...++.....|. .+..+||.|.+..|.+++..|++..-.||+||
T Consensus 236 v~~a~eK~~~lv~~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~T 314 (567)
T KOG0345|consen 236 VCEADEKLSQLVHLLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCT 314 (567)
T ss_pred EecHHHHHHHHHHHHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEee
Confidence 999999999999999875 56899999999999999988876 56789999999999999999999999999999
Q ss_pred ccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCCchHHHHHHHHh-CCcceecCCCCHHHHHHH
Q 008207 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSKIERES-GVKFEHISAPQPADIAKA 495 (574)
Q Consensus 417 d~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~i~~~ 495 (574)
|+++||||||+|++||+||+|.++..|+||+|||||+|+.|.+++|+.|++..+-.+.+.- ...++++..+....-.-.
T Consensus 315 DVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~e~~~~~~~~ 394 (567)
T KOG0345|consen 315 DVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDTEKASLSVYQ 394 (567)
T ss_pred hhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhcccccchhHHH
Confidence 9999999999999999999999999999999999999999999999999944444444443 356666666655442111
Q ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHhcc
Q 008207 496 AGVEAAETITQVSDSVIPAFKSAAEELLNNS 526 (574)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 526 (574)
....+.-.-..+-+.....|-.-++.+.+.+
T Consensus 395 ~ir~~~~~DR~~~dkG~kAFVS~VraY~~H~ 425 (567)
T KOG0345|consen 395 DIRSIISKDRAVLDKGLKAFVSHVRAYKKHH 425 (567)
T ss_pred HHHHHhcccHHHHhhhHHHHHHHHHHHhhcc
Confidence 1111111111233445677777777777666
No 10
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2e-70 Score=541.39 Aligned_cols=371 Identities=30% Similarity=0.449 Sum_probs=341.8
Q ss_pred CCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCC
Q 008207 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (574)
Q Consensus 105 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~ 184 (574)
...+..|.+|+|+...++.|+..+|..||.+|+.+||..+.|+|+|+.|.||||||+||++|++++|....|..
T Consensus 65 ~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~------ 138 (758)
T KOG0343|consen 65 STTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSP------ 138 (758)
T ss_pred hhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCC------
Confidence 34456799999999999999999999999999999999999999999999999999999999999999887754
Q ss_pred CCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhc-CCccCCCce
Q 008207 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLSSLK 263 (574)
Q Consensus 185 ~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~-~~~~l~~~~ 263 (574)
..+.-||||+||||||.|+++.+.+.+.++++..+.+.||.+...+...+. +.+|+|||||||+.||.. ..++.+++.
T Consensus 139 ~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQ 217 (758)
T KOG0343|consen 139 TDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQ 217 (758)
T ss_pred CCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcce
Confidence 455669999999999999999999999999999999999999876666654 499999999999999965 567889999
Q ss_pred EEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEe
Q 008207 264 FRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343 (574)
Q Consensus 264 ~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 343 (574)
+||+||||+|++|||...+..|+..+|. .+|+++||||-+..+..+++..+ .+|.+|.+.......++.+++|+|+.
T Consensus 218 mLvLDEADR~LDMGFk~tL~~Ii~~lP~--~RQTLLFSATqt~svkdLaRLsL-~dP~~vsvhe~a~~atP~~L~Q~y~~ 294 (758)
T KOG0343|consen 218 MLVLDEADRMLDMGFKKTLNAIIENLPK--KRQTLLFSATQTKSVKDLARLSL-KDPVYVSVHENAVAATPSNLQQSYVI 294 (758)
T ss_pred EEEeccHHHHHHHhHHHHHHHHHHhCCh--hheeeeeecccchhHHHHHHhhc-CCCcEEEEeccccccChhhhhheEEE
Confidence 9999999999999999999999999998 88999999999999999999998 78999998877778899999999999
Q ss_pred CCchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC------CCccccccCCHHHHHHHHHHHhCCCccEEEEec
Q 008207 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (574)
Q Consensus 344 ~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd 417 (574)
++...+..+|..++..+ ...++|||+.|++++..++..|. .+..+||.|+|..|..++..|...+..||+|||
T Consensus 295 v~l~~Ki~~L~sFI~sh-lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TD 373 (758)
T KOG0343|consen 295 VPLEDKIDMLWSFIKSH-LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTD 373 (758)
T ss_pred EehhhHHHHHHHHHHhc-cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeeh
Confidence 99999999999999987 56899999999999999998886 567899999999999999999999999999999
Q ss_pred cccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC--chHHHHHHHHhCCcceecCCC
Q 008207 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERESGVKFEHISAP 487 (574)
Q Consensus 418 ~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~--~~~~~~i~~~~~~~~~~~~~~ 487 (574)
+++||||+|.|+|||++|+|.++++||||+|||+|.+..|.|++++.|. +.++..+++. ++++.++...
T Consensus 374 v~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k-~I~i~~i~i~ 444 (758)
T KOG0343|consen 374 VAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK-KIPIKEIKID 444 (758)
T ss_pred hhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc-CCCHHhhccC
Confidence 9999999999999999999999999999999999999999999999998 4556666665 4777776654
No 11
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.1e-68 Score=576.03 Aligned_cols=423 Identities=35% Similarity=0.574 Sum_probs=373.5
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 008207 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (574)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (574)
..|.+++|++.++++|.++||..|||+|.++||.++.|+|+|++||||||||++|++|+++.+... ...+
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~----------~~~~ 75 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE----------LKAP 75 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc----------cCCC
Confidence 459999999999999999999999999999999999999999999999999999999999988643 2346
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCCC-CceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEe
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVl 267 (574)
++|||+|||+||.|+++.+..+.... ++.+..++||.++..+...+..+++|+|+||++|++++.++.+.++++++|||
T Consensus 76 ~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVl 155 (629)
T PRK11634 76 QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVL 155 (629)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEe
Confidence 89999999999999999999887654 79999999999999999999999999999999999999999999999999999
Q ss_pred cCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCch
Q 008207 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (574)
Q Consensus 268 DEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 347 (574)
||||+|++++|..++..|+..++. .+|+++||||+|..+..+...|+ .++..+.+.... .....+.+.++.+...
T Consensus 156 DEAd~ml~~gf~~di~~Il~~lp~--~~q~llfSAT~p~~i~~i~~~~l-~~~~~i~i~~~~--~~~~~i~q~~~~v~~~ 230 (629)
T PRK11634 156 DEADEMLRMGFIEDVETIMAQIPE--GHQTALFSATMPEAIRRITRRFM-KEPQEVRIQSSV--TTRPDISQSYWTVWGM 230 (629)
T ss_pred ccHHHHhhcccHHHHHHHHHhCCC--CCeEEEEEccCChhHHHHHHHHc-CCCeEEEccCcc--ccCCceEEEEEEechh
Confidence 999999999999999999999987 78999999999999999999998 566666554332 4456778888888888
Q ss_pred hhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccC
Q 008207 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423 (574)
Q Consensus 348 ~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gl 423 (574)
.+...+..++... ...++||||+|+..+..|+..|. .+..+||+|++.+|..+++.|++|+++|||||+++++||
T Consensus 231 ~k~~~L~~~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGI 309 (629)
T PRK11634 231 RKNEALVRFLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGL 309 (629)
T ss_pred hHHHHHHHHHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCC
Confidence 8888888888765 45789999999999999999987 567899999999999999999999999999999999999
Q ss_pred CCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHHhCCcceecCCCCHHHHHHHHHHHHHH
Q 008207 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAE 502 (574)
Q Consensus 424 di~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 502 (574)
|+|+|++|||||+|.+.+.|+||+|||||+|+.|.+++|+++. ...+..|++.++..++++..|..+++..........
T Consensus 310 Dip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~~~~~~~~~~~~~~~ 389 (629)
T PRK11634 310 DVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAA 389 (629)
T ss_pred CcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988 778999999999999999999999998877777766
Q ss_pred HHhh-cCCCCchHHHHHHHHHHhc---cCCCHHHHHHHHHHHhcccccc
Q 008207 503 TITQ-VSDSVIPAFKSAAEELLNN---SGLSAAELLAKALAKAVVSAFL 547 (574)
Q Consensus 503 ~~~~-~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~l~~~~~~~~~ 547 (574)
.+.. +.....+.|..++.++.+. ..+++.+++++++....+...+
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~a~~~~~~~~~~~ 438 (629)
T PRK11634 390 KVQQQLESSDLDQYRALLAKIQPTAEGEELDLETLAAALLKMAQGERPL 438 (629)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHHcCCCcc
Confidence 6654 3345577888999988865 2467888765555555444333
No 12
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=2.3e-69 Score=531.48 Aligned_cols=362 Identities=35% Similarity=0.553 Sum_probs=329.6
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 008207 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (574)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (574)
-.+|++.+++.++++.+...||..|+|||.++||..++++|+|+.|.||||||++|++|++..+...+.-.. ......+
T Consensus 244 lrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~-~en~~~g 322 (673)
T KOG0333|consen 244 LRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMAR-LENNIEG 322 (673)
T ss_pred ccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcch-hhhcccC
Confidence 367888999999999999999999999999999999999999999999999999999999999987663211 1123578
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEe
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVl 267 (574)
|+++|++|||+||+||.++-.+|+...+++++.++||.+...|-..+..+|+|+|+|||||.+.+.+..+.++.+.+||+
T Consensus 323 pyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvl 402 (673)
T KOG0333|consen 323 PYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVL 402 (673)
T ss_pred ceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhhhcCCcHHHHHHHHHhccCcc---------------------C--ceEEEEeccCchhHHHHHHHhcccCCeEEE
Q 008207 268 DEADEMLRMGFVEDVELILGKVEDAN---------------------K--VQTLLFSATLPSWVKHISTKFLKSDKKTID 324 (574)
Q Consensus 268 DEah~~l~~~~~~~~~~il~~l~~~~---------------------~--~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~ 324 (574)
||||+|+++||.+++..|+.++|..+ + +|+++||||||+.+..+++.|| ..|.++.
T Consensus 403 deadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~yl-r~pv~vt 481 (673)
T KOG0333|consen 403 DEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYL-RRPVVVT 481 (673)
T ss_pred cchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHh-hCCeEEE
Confidence 99999999999999999999998632 1 7999999999999999999999 5777776
Q ss_pred EecCcccccccceeEEEEeCCchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHH
Q 008207 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREV 400 (574)
Q Consensus 325 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~ 400 (574)
+... ......++|.++......+...|..++... ...++|||+|+++.|+.|++.|. .+..|||+-+|.+|..
T Consensus 482 ig~~--gk~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~ 558 (673)
T KOG0333|consen 482 IGSA--GKPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQREN 558 (673)
T ss_pred eccC--CCCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHH
Confidence 5443 356677889888888888899999999876 56899999999999999999998 6778999999999999
Q ss_pred HHHHHhCCCccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHH
Q 008207 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIE 474 (574)
Q Consensus 401 ~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~ 474 (574)
++..|++|...||||||+++||||||+|++|||||++.+.++|+||||||||+|+.|++++|+++. ...+..+-
T Consensus 559 aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLk 633 (673)
T KOG0333|consen 559 ALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLK 633 (673)
T ss_pred HHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998 34333433
No 13
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.4e-69 Score=498.80 Aligned_cols=366 Identities=29% Similarity=0.479 Sum_probs=341.8
Q ss_pred CCCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCC
Q 008207 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183 (574)
Q Consensus 104 ~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~ 183 (574)
....-+.|++|.|..+++..+.+.||..|+|+|.++||.++.|+|+++.|..|+|||.||++|+++.+....
T Consensus 80 t~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~-------- 151 (459)
T KOG0326|consen 80 TATKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKK-------- 151 (459)
T ss_pred ccccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccc--------
Confidence 344557899999999999999999999999999999999999999999999999999999999999987653
Q ss_pred CCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCce
Q 008207 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (574)
Q Consensus 184 ~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~ 263 (574)
...+++|++||||||.|+...+..+++++++.+...+||++.....-.+.+.+|++|+||||++|++.++--+++++.
T Consensus 152 --~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~ 229 (459)
T KOG0326|consen 152 --NVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCV 229 (459)
T ss_pred --cceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhce
Confidence 456899999999999999999999999999999999999999988888999999999999999999999999999999
Q ss_pred EEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEe
Q 008207 264 FRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343 (574)
Q Consensus 264 ~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 343 (574)
++|+||||.|++..|...++.++..+|. .+|++++|||+|-.+..+..+++ ..|..|.+.. ..+...+.|+|-.
T Consensus 230 ~lV~DEADKlLs~~F~~~~e~li~~lP~--~rQillySATFP~tVk~Fm~~~l-~kPy~INLM~---eLtl~GvtQyYaf 303 (459)
T KOG0326|consen 230 ILVMDEADKLLSVDFQPIVEKLISFLPK--ERQILLYSATFPLTVKGFMDRHL-KKPYEINLME---ELTLKGVTQYYAF 303 (459)
T ss_pred EEEechhhhhhchhhhhHHHHHHHhCCc--cceeeEEecccchhHHHHHHHhc-cCcceeehhh---hhhhcchhhheee
Confidence 9999999999999999999999999998 78999999999999999999999 5777777654 3677889999999
Q ss_pred CCchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccc
Q 008207 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419 (574)
Q Consensus 344 ~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~ 419 (574)
+....|...|..+...+ .-...|||||+...++.|+..+. .+.++|+.|.|+.|.+++..|++|.++.|||||.+
T Consensus 304 V~e~qKvhCLntLfskL-qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~ 382 (459)
T KOG0326|consen 304 VEERQKVHCLNTLFSKL-QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLF 382 (459)
T ss_pred echhhhhhhHHHHHHHh-cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhh
Confidence 99999999999988876 44688999999999999998765 67899999999999999999999999999999999
Q ss_pred cccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHHhCCcceecCC
Q 008207 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISA 486 (574)
Q Consensus 420 ~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~ 486 (574)
.||||+++|++|||||+|.++++|+||+||+||.|..|.++.|++-. ...+.+||+++|.+|..++.
T Consensus 383 TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~ 450 (459)
T KOG0326|consen 383 TRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPS 450 (459)
T ss_pred hcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCC
Confidence 99999999999999999999999999999999999999999999988 78899999999999988763
No 14
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.8e-66 Score=544.03 Aligned_cols=374 Identities=32% Similarity=0.521 Sum_probs=333.2
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 008207 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (574)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (574)
...|++++|++.++++|.+.||..|||+|.++||.+++|+|++++||||||||++|++|+++.+........ ....+
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~---~~~~~ 83 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPED---RKVNQ 83 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccc---cccCC
Confidence 357999999999999999999999999999999999999999999999999999999999999876432110 11346
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEe
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVl 267 (574)
+++|||+|||+||.|+++.+..++...++++..++||.+...+...+..+++|+|+||++|++++.++.+.++++++|||
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lVi 163 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVL 163 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEE
Confidence 78999999999999999999999999999999999999998888888888999999999999999998899999999999
Q ss_pred cCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCch
Q 008207 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (574)
Q Consensus 268 DEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 347 (574)
||||+|++++|..++..++..++.....+.++||||++..+..+...++ ..+..+.+.... .....+.+.++.+...
T Consensus 164 DEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~-~~p~~i~v~~~~--~~~~~i~~~~~~~~~~ 240 (423)
T PRK04837 164 DEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHM-NNPEYVEVEPEQ--KTGHRIKEELFYPSNE 240 (423)
T ss_pred ecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHC-CCCEEEEEcCCC--cCCCceeEEEEeCCHH
Confidence 9999999999999999999999865567899999999999999988888 566666654332 3445677777777777
Q ss_pred hhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccC
Q 008207 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423 (574)
Q Consensus 348 ~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gl 423 (574)
.+...+..++... ...++||||+++..++.++..|. .+..+||++++.+|..+++.|++|+++||||||+++|||
T Consensus 241 ~k~~~l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGi 319 (423)
T PRK04837 241 EKMRLLQTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGL 319 (423)
T ss_pred HHHHHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCC
Confidence 7888888887654 46799999999999999999986 678999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHHhCCcceecCCCC
Q 008207 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQ 488 (574)
Q Consensus 424 di~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~~~ 488 (574)
|+|+|++|||||+|.+...|+||+|||||.|+.|.|++|+++. ...+..+++.++..++....+.
T Consensus 320 Dip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 385 (423)
T PRK04837 320 HIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSKYDS 385 (423)
T ss_pred CccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCccCCh
Confidence 9999999999999999999999999999999999999999998 6778899999988887655443
No 15
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-66 Score=519.84 Aligned_cols=356 Identities=38% Similarity=0.606 Sum_probs=323.9
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 008207 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (574)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (574)
..|..-.+...+..++...||..|||+|+.+||.+..|+|+++||+||||||.||++|++..+...........+....|
T Consensus 74 ~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P 153 (482)
T KOG0335|consen 74 PTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYP 153 (482)
T ss_pred ccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCC
Confidence 46777778999999999999999999999999999999999999999999999999999999988765443333334579
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEec
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlD 268 (574)
++||++||||||.|++++.+++....++++..+|||.++..+.+.+.+++||+|||||||.++++++.+.|.+++|+|||
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLD 233 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLD 233 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cchhhhc-CCcHHHHHHHHHhccC--ccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCC
Q 008207 269 EADEMLR-MGFVEDVELILGKVED--ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (574)
Q Consensus 269 Eah~~l~-~~~~~~~~~il~~l~~--~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 345 (574)
|||+|++ ++|..++..|+..... ...+|+++||||+|..+..++..++..++..+.+..- .....++.|....+.
T Consensus 234 EADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rv--g~~~~ni~q~i~~V~ 311 (482)
T KOG0335|consen 234 EADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRV--GSTSENITQKILFVN 311 (482)
T ss_pred chHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeee--ccccccceeEeeeec
Confidence 9999999 9999999999987744 3578999999999999999999998655555554433 367789999999999
Q ss_pred chhhhhhhhHHHHhhc---CCC-----eEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEE
Q 008207 346 SSARSQVIPDIIRCYS---SGG-----RTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTL 413 (574)
Q Consensus 346 ~~~~~~~l~~ll~~~~---~~~-----~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vL 413 (574)
...+...|.+++.... ..+ .++|||.|++.+..+..+|. .+..+||+.+|.+|.+.++.|++|.+.+|
T Consensus 312 ~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvl 391 (482)
T KOG0335|consen 312 EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVL 391 (482)
T ss_pred chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceE
Confidence 9999999988887543 234 79999999999999999997 67789999999999999999999999999
Q ss_pred EEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 414 vaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
|||++++||||||+|+||||||+|.+..+|+||+|||||.|+.|.++.|++..
T Consensus 392 VaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~ 444 (482)
T KOG0335|consen 392 VATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEK 444 (482)
T ss_pred EEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccc
Confidence 99999999999999999999999999999999999999999999999999954
No 16
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-66 Score=511.15 Aligned_cols=366 Identities=31% Similarity=0.491 Sum_probs=315.3
Q ss_pred CCCCcccccCCCHHHHHHHH-HCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCC
Q 008207 106 EHPNAVSRFRISVPLREKLK-SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (574)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~ 184 (574)
.....|..+||++.+...|. .+++..||.+|.++||.+++|+|++|.|+||||||+||++|+++.+.....+.. +
T Consensus 133 fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~----R 208 (708)
T KOG0348|consen 133 FTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQ----R 208 (708)
T ss_pred cccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCcccc----c
Confidence 34567899999999999995 579999999999999999999999999999999999999999999987765443 4
Q ss_pred CCCCeEEEEeCcHHHHHHHHHHHHHhhCC-CCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhc-CCccCCCc
Q 008207 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGA-VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLSSL 262 (574)
Q Consensus 185 ~~~~~~Lil~PtreLa~Qv~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~-~~~~l~~~ 262 (574)
..++.+|||+||||||.|+++.++++... ..+-.+.+.||.....+...++.|++|+|+|||||+|||.+ ..+.++.+
T Consensus 209 s~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~L 288 (708)
T KOG0348|consen 209 SDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRL 288 (708)
T ss_pred cCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeee
Confidence 67899999999999999999999887654 45667888999999999999999999999999999999987 56889999
Q ss_pred eEEEecCchhhhcCCcHHHHHHHHHhccC-----------ccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCc--
Q 008207 263 KFRVLDEADEMLRMGFVEDVELILGKVED-----------ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNE-- 329 (574)
Q Consensus 263 ~~lVlDEah~~l~~~~~~~~~~il~~l~~-----------~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~-- 329 (574)
+|||+||||+++++||..++..|++.+.. ++..|.+++|||++..|.+++..-+ .++..|.+....
T Consensus 289 RwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sL-kDpv~I~ld~s~~~ 367 (708)
T KOG0348|consen 289 RWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSL-KDPVYISLDKSHSQ 367 (708)
T ss_pred eEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccc-cCceeeeccchhhh
Confidence 99999999999999999999999988832 1147999999999999999999888 677777622110
Q ss_pred ---------------------ccccccceeEEEEeCCchhhhhhhhHHHHhh---cCCCeEEEEecChHHHHHHHHhCC-
Q 008207 330 ---------------------KMKASTNVRHIVLPCSSSARSQVIPDIIRCY---SSGGRTIIFTETKESASQLADLLP- 384 (574)
Q Consensus 330 ---------------------~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~---~~~~~~lVF~~t~~~~~~l~~~l~- 384 (574)
....+.++.|.|..++..-++-.|..+|... ....++|||+.+.+.++.-+.+|.
T Consensus 368 ~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~ 447 (708)
T KOG0348|consen 368 LNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSE 447 (708)
T ss_pred cCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHh
Confidence 0233455667777787777777666666533 355689999999999998887774
Q ss_pred -------------------------CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEeCCCCC
Q 008207 385 -------------------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRD 439 (574)
Q Consensus 385 -------------------------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s 439 (574)
++.-+||+|+|.+|..+++.|...+-.||+|||+++||||+|+|++||+||+|.+
T Consensus 448 ~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s 527 (708)
T KOG0348|consen 448 ALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFS 527 (708)
T ss_pred hhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCC
Confidence 3456999999999999999999999899999999999999999999999999999
Q ss_pred HhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHH
Q 008207 440 VEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERE 476 (574)
Q Consensus 440 ~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~ 476 (574)
+++|+||+|||+|+|..|.+++|+.|. ..++..+...
T Consensus 528 ~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 528 TADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred HHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 999999999999999999999999999 4455555443
No 17
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3e-65 Score=542.05 Aligned_cols=367 Identities=36% Similarity=0.544 Sum_probs=333.4
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 008207 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (574)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (574)
..+|++++|++.++++|.++||..|||+|.++||.+++|+|++++||||||||++|++|+++.+.... ..
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~----------~~ 72 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR----------FR 72 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc----------CC
Confidence 35799999999999999999999999999999999999999999999999999999999999986432 24
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCC-CceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEE
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lV 266 (574)
+++||++|||+||.|++++++.++... ++++..++||.+...+...+..+++|+|+|||+|.+++.++.+.++++++||
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lV 152 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLV 152 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEE
Confidence 579999999999999999999887654 7899999999999999999999999999999999999999989999999999
Q ss_pred ecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCc
Q 008207 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (574)
Q Consensus 267 lDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 346 (574)
+||||+|++++|..++..++..++. ..|+++||||+|+.+..+...++ ..+..+.+.... ....+.+.++.+..
T Consensus 153 iDEad~~l~~g~~~~l~~i~~~~~~--~~q~ll~SAT~~~~~~~l~~~~~-~~~~~i~~~~~~---~~~~i~~~~~~~~~ 226 (460)
T PRK11776 153 LDEADRMLDMGFQDAIDAIIRQAPA--RRQTLLFSATYPEGIAAISQRFQ-RDPVEVKVESTH---DLPAIEQRFYEVSP 226 (460)
T ss_pred EECHHHHhCcCcHHHHHHHHHhCCc--ccEEEEEEecCcHHHHHHHHHhc-CCCEEEEECcCC---CCCCeeEEEEEeCc
Confidence 9999999999999999999999987 78999999999999999999988 566666654332 34558888888888
Q ss_pred hhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEecccccc
Q 008207 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (574)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~G 422 (574)
..+...+..++... .+.++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|+.+|||||++++||
T Consensus 227 ~~k~~~l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rG 305 (460)
T PRK11776 227 DERLPALQRLLLHH-QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARG 305 (460)
T ss_pred HHHHHHHHHHHHhc-CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccc
Confidence 88888898888765 45789999999999999999987 67789999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHHhCCcceecCCCCHHH
Q 008207 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPAD 491 (574)
Q Consensus 423 ldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~ 491 (574)
||+|++++|||||+|.++..|+||+|||||+|+.|.|++|+.+. ...+..+++.++..++...+|....
T Consensus 306 iDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~l~~~~~ 375 (460)
T PRK11776 306 LDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNWEPLPSLSP 375 (460)
T ss_pred cchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCceecCCchhh
Confidence 99999999999999999999999999999999999999999998 6778899999999888877776543
No 18
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-66 Score=494.39 Aligned_cols=350 Identities=36% Similarity=0.610 Sum_probs=319.2
Q ss_pred CCccc-ccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCC
Q 008207 108 PNAVS-RFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (574)
Q Consensus 108 ~~~~~-~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (574)
...|+ .|.-.+++++.+.+.||.+|||||.+++|.+|+|+|++++|+||+|||++|++|-+-++...+... +...
T Consensus 218 ~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~----~qr~ 293 (629)
T KOG0336|consen 218 VCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRR----EQRN 293 (629)
T ss_pred cCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhh----hccC
Confidence 34554 477889999999999999999999999999999999999999999999999999988887665433 2356
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEE
Q 008207 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (574)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lV 266 (574)
+|.+|+++|||+||.|+.-+..++. +.+++..|+|||.+...|...++.+.+|+|+|||||.++...+.+++.++.|||
T Consensus 294 ~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlV 372 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLV 372 (629)
T ss_pred CCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEE
Confidence 7899999999999999998887764 568999999999999999999999999999999999999999999999999999
Q ss_pred ecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCc
Q 008207 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (574)
Q Consensus 267 lDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 346 (574)
|||||+||+|||..++..|+-.+.+ .+|+++.|||+|..+..++..|+ +.+..+. .+.........+.|.++....
T Consensus 373 lDEADrMLDMgFEpqIrkilldiRP--DRqtvmTSATWP~~VrrLa~sY~-Kep~~v~-vGsLdL~a~~sVkQ~i~v~~d 448 (629)
T KOG0336|consen 373 LDEADRMLDMGFEPQIRKILLDIRP--DRQTVMTSATWPEGVRRLAQSYL-KEPMIVY-VGSLDLVAVKSVKQNIIVTTD 448 (629)
T ss_pred ecchhhhhcccccHHHHHHhhhcCC--cceeeeecccCchHHHHHHHHhh-hCceEEE-ecccceeeeeeeeeeEEeccc
Confidence 9999999999999999999988866 88999999999999999999999 4554443 444445666788888888889
Q ss_pred hhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEecccccc
Q 008207 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (574)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~G 422 (574)
..+...+..++...++..++||||..+..|+.|+.-|. ....+||+-.|.+|+..++.|+.|+++||||||+++||
T Consensus 449 ~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRG 528 (629)
T KOG0336|consen 449 SEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRG 528 (629)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcC
Confidence 99999999999999999999999999999999998776 56789999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 423 ldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
||+++++||+|||+|.+.+.|+||+|||||+|+.|.+++|++.+
T Consensus 529 lDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~ 572 (629)
T KOG0336|consen 529 LDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRN 572 (629)
T ss_pred CCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehh
Confidence 99999999999999999999999999999999999999999977
No 19
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=3.5e-65 Score=546.70 Aligned_cols=363 Identities=33% Similarity=0.579 Sum_probs=322.0
Q ss_pred CCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCC
Q 008207 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (574)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 185 (574)
.....|+++++++.++++|.++||..|||+|.++||.++.|+|+|++||||||||++|++|++.++...... ...
T Consensus 127 ~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~-----~~~ 201 (545)
T PTZ00110 127 KPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLL-----RYG 201 (545)
T ss_pred cccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccc-----cCC
Confidence 344678899999999999999999999999999999999999999999999999999999999888654321 124
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEE
Q 008207 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (574)
Q Consensus 186 ~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~l 265 (574)
.+|++|||+||||||.|+.+++..++...++++.+++||.+...+...+..+++|+|+||++|++++.++...++++++|
T Consensus 202 ~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~l 281 (545)
T PTZ00110 202 DGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYL 281 (545)
T ss_pred CCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEE
Confidence 56889999999999999999999999988999999999999998988899999999999999999999988899999999
Q ss_pred EecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCC
Q 008207 266 VLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (574)
Q Consensus 266 VlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 345 (574)
||||||+|++++|..++..|+..++. .+|+++||||+|..+..+++.++...+..+.+.... .....++.+.+..+.
T Consensus 282 ViDEAd~mld~gf~~~i~~il~~~~~--~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~-l~~~~~i~q~~~~~~ 358 (545)
T PTZ00110 282 VLDEADRMLDMGFEPQIRKIVSQIRP--DRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLD-LTACHNIKQEVFVVE 358 (545)
T ss_pred EeehHHhhhhcchHHHHHHHHHhCCC--CCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCc-cccCCCeeEEEEEEe
Confidence 99999999999999999999999876 789999999999999999998885555555543222 234456777777777
Q ss_pred chhhhhhhhHHHHhhc-CCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEecccc
Q 008207 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420 (574)
Q Consensus 346 ~~~~~~~l~~ll~~~~-~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~ 420 (574)
...+...|..++.... .+.++||||+++..|+.|+..|. .+..+||++++.+|..+++.|++|+.+|||||++++
T Consensus 359 ~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~ 438 (545)
T PTZ00110 359 EHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVAS 438 (545)
T ss_pred chhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhh
Confidence 7778888888887654 67899999999999999999997 567899999999999999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHH
Q 008207 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERE 476 (574)
Q Consensus 421 ~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~ 476 (574)
||||+|+|++|||||+|.+.++|+||+|||||+|+.|.|++|+++. ......+.+.
T Consensus 439 rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~ 495 (545)
T PTZ00110 439 RGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKV 495 (545)
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988 4444444444
No 20
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.6e-64 Score=532.45 Aligned_cols=369 Identities=35% Similarity=0.544 Sum_probs=329.2
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCe
Q 008207 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPS 189 (574)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~ 189 (574)
+|++|+|+++++++|.++||..|||+|.++||.++.|+|+|++||||||||++|++|+++.+....... .....++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~----~~~~~~~ 77 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHA----KGRRPVR 77 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhccccc----ccCCCce
Confidence 588999999999999999999999999999999999999999999999999999999999987543211 0123468
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecC
Q 008207 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269 (574)
Q Consensus 190 ~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDE 269 (574)
+|||+|||+||.|+.+.+..+....++.+..++||.+...+...+..+++|+|+||++|++++.+..+.++++++|||||
T Consensus 78 aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDE 157 (456)
T PRK10590 78 ALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDE 157 (456)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeec
Confidence 99999999999999999999999999999999999999988888888999999999999999998888999999999999
Q ss_pred chhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhh
Q 008207 270 ADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349 (574)
Q Consensus 270 ah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~ 349 (574)
||+|++++|..++..++..++. ..|+++||||++..+..+...++ .++..+.+.... .....+.+.+..+....+
T Consensus 158 ah~ll~~~~~~~i~~il~~l~~--~~q~l~~SAT~~~~~~~l~~~~~-~~~~~i~~~~~~--~~~~~i~~~~~~~~~~~k 232 (456)
T PRK10590 158 ADRMLDMGFIHDIRRVLAKLPA--KRQNLLFSATFSDDIKALAEKLL-HNPLEIEVARRN--TASEQVTQHVHFVDKKRK 232 (456)
T ss_pred HHHHhccccHHHHHHHHHhCCc--cCeEEEEeCCCcHHHHHHHHHHc-CCCeEEEEeccc--ccccceeEEEEEcCHHHH
Confidence 9999999999999999999987 78999999999999999998888 456555554322 344567777777777777
Q ss_pred hhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCC
Q 008207 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDI 425 (574)
Q Consensus 350 ~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi 425 (574)
..++..++... ...++||||+++..++.++..|. .+..+||++++.+|..+++.|++|+++|||||++++||||+
T Consensus 233 ~~~l~~l~~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDi 311 (456)
T PRK10590 233 RELLSQMIGKG-NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDI 311 (456)
T ss_pred HHHHHHHHHcC-CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCc
Confidence 77777777643 45789999999999999999997 56789999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHHhCCcceecCCCC
Q 008207 426 NDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQ 488 (574)
Q Consensus 426 ~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~~~ 488 (574)
|+|++|||||+|.++.+|+||+|||||+|..|.+++|+.+. ...++.+++.++.+++....+.
T Consensus 312 p~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~~~~~~~ 375 (456)
T PRK10590 312 EELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPG 375 (456)
T ss_pred ccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCcccccCC
Confidence 99999999999999999999999999999999999999988 7788999999998887666554
No 21
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.4e-64 Score=538.07 Aligned_cols=368 Identities=35% Similarity=0.562 Sum_probs=325.3
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCe
Q 008207 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPS 189 (574)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~ 189 (574)
.|++|+|++.++++|.+.||..|||+|.++||.++.|+|++++||||||||++|++|+++.+....... ......++
T Consensus 10 ~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~---~~~~~~~r 86 (572)
T PRK04537 10 TFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALA---DRKPEDPR 86 (572)
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccc---ccccCCce
Confidence 599999999999999999999999999999999999999999999999999999999999987532110 01123578
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcC-CccCCCceEEEec
Q 008207 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG-NIDLSSLKFRVLD 268 (574)
Q Consensus 190 ~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~-~~~l~~~~~lVlD 268 (574)
+|||+|||+||.|+++.+..++...++++..++||.++..+...+..+++|+|+||++|++++.+. .+.+..+++||||
T Consensus 87 aLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViD 166 (572)
T PRK04537 87 ALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLD 166 (572)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEec
Confidence 999999999999999999999999999999999999999988888888999999999999999775 4678999999999
Q ss_pred CchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchh
Q 008207 269 EADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348 (574)
Q Consensus 269 Eah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~ 348 (574)
|||+|++++|..++..|+..++....+|+++||||++..+..+...++. .+..+.+... ......+.+.++.+....
T Consensus 167 EAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~-~p~~i~v~~~--~~~~~~i~q~~~~~~~~~ 243 (572)
T PRK04537 167 EADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMN-EPEKLVVETE--TITAARVRQRIYFPADEE 243 (572)
T ss_pred CHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhc-CCcEEEeccc--cccccceeEEEEecCHHH
Confidence 9999999999999999999998755689999999999999999988884 4444433322 234556778777777777
Q ss_pred hhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCC
Q 008207 349 RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLD 424 (574)
Q Consensus 349 ~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gld 424 (574)
+...+..++... .+.++||||+|+..++.|++.|. .+..+||+|++.+|..+++.|++|+++||||||+++||||
T Consensus 244 k~~~L~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGID 322 (572)
T PRK04537 244 KQTLLLGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLH 322 (572)
T ss_pred HHHHHHHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCC
Confidence 777777777653 56799999999999999999986 6789999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHHhCCcceec
Q 008207 425 INDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHI 484 (574)
Q Consensus 425 i~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~ 484 (574)
+|+|++|||||+|.+.+.|+||+|||||.|..|.|++|+.+. ...+..+++.++.+++..
T Consensus 323 ip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~~ 383 (572)
T PRK04537 323 IDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVE 383 (572)
T ss_pred ccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCcc
Confidence 999999999999999999999999999999999999999987 667889999888777544
No 22
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-65 Score=490.93 Aligned_cols=359 Identities=27% Similarity=0.443 Sum_probs=324.0
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 008207 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (574)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (574)
..|++|+|++++++++.+.||..||-+|+.+||.+++|+|+++.|.||||||+||++|+++.+....... ....+|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~----~~e~~~ 94 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN----DGEQGP 94 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc----cccccc
Confidence 6799999999999999999999999999999999999999999999999999999999999998765432 346789
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCCCC--ceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCC-ccCCCceEE
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGAVG--LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN-IDLSSLKFR 265 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~--~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~-~~l~~~~~l 265 (574)
.++||+||||||+|++..+.++..+++ +++.-+...++.......+...++|+|+||++++.++..+. ..+..++++
T Consensus 95 sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~L 174 (569)
T KOG0346|consen 95 SAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFL 174 (569)
T ss_pred eeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeE
Confidence 999999999999999999998876654 56666666777777778888999999999999999999887 678899999
Q ss_pred EecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCC
Q 008207 266 VLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (574)
Q Consensus 266 VlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 345 (574)
|+||||.|+..||.+++..+..++|. ..|.++||||+..++..+...++ .+|..+.+...+. ..+..+.|+++.|+
T Consensus 175 VvDEADLllsfGYeedlk~l~~~LPr--~~Q~~LmSATl~dDv~~LKkL~l-~nPviLkl~e~el-~~~dqL~Qy~v~cs 250 (569)
T KOG0346|consen 175 VVDEADLLLSFGYEEDLKKLRSHLPR--IYQCFLMSATLSDDVQALKKLFL-HNPVILKLTEGEL-PNPDQLTQYQVKCS 250 (569)
T ss_pred EechhhhhhhcccHHHHHHHHHhCCc--hhhheeehhhhhhHHHHHHHHhc-cCCeEEEeccccC-CCcccceEEEEEec
Confidence 99999999999999999999999997 89999999999999999999999 6788888776553 46788999999999
Q ss_pred chhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEecc---
Q 008207 346 SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV--- 418 (574)
Q Consensus 346 ~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~--- 418 (574)
..+++.++..+++..--.|++|||+||.+.+.+|.-+|. ...+++|.|+.+.|..++++|..|-++++||||.
T Consensus 251 e~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~ 330 (569)
T KOG0346|consen 251 EEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSAD 330 (569)
T ss_pred cchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccc
Confidence 999999999999877778999999999999999998887 5678999999999999999999999999999992
Q ss_pred --------------------------------ccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 419 --------------------------------AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 419 --------------------------------~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
.+||||+..|..|||||+|.++..||||+|||+|+|++|.+++|+.|.
T Consensus 331 ~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~ 410 (569)
T KOG0346|consen 331 GDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPK 410 (569)
T ss_pred hhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecch
Confidence 469999999999999999999999999999999999999999999998
Q ss_pred -chHHHHHHH
Q 008207 467 -KSSVSKIER 475 (574)
Q Consensus 467 -~~~~~~i~~ 475 (574)
......++.
T Consensus 411 e~~g~~~le~ 420 (569)
T KOG0346|consen 411 EEFGKESLES 420 (569)
T ss_pred HHhhhhHHHH
Confidence 332334443
No 23
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.3e-63 Score=530.15 Aligned_cols=362 Identities=27% Similarity=0.458 Sum_probs=316.8
Q ss_pred CCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCC
Q 008207 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (574)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 185 (574)
.....|+++++++.+++.|.+.||..|||+|.++||.++.|+|++++||||||||++|++|++.++....... ....
T Consensus 118 ~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~---~~~~ 194 (518)
T PLN00206 118 PPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGH---PSEQ 194 (518)
T ss_pred chhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccc---cccc
Confidence 3456789999999999999999999999999999999999999999999999999999999999886432111 0113
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEE
Q 008207 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (574)
Q Consensus 186 ~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~l 265 (574)
.++++|||+|||+||.|+.+.++.++...++++.+++||.....+...+..+++|+|+|||+|.+++.++.+.++++++|
T Consensus 195 ~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~l 274 (518)
T PLN00206 195 RNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVL 274 (518)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEE
Confidence 56899999999999999999999999888999999999999988888888899999999999999999988899999999
Q ss_pred EecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCC
Q 008207 266 VLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (574)
Q Consensus 266 VlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 345 (574)
|+||||+|+++||..++..++..++ .+|+++||||++..+..+...++ ..+..+.+... ......+.+.++.+.
T Consensus 275 ViDEad~ml~~gf~~~i~~i~~~l~---~~q~l~~SATl~~~v~~l~~~~~-~~~~~i~~~~~--~~~~~~v~q~~~~~~ 348 (518)
T PLN00206 275 VLDEVDCMLERGFRDQVMQIFQALS---QPQVLLFSATVSPEVEKFASSLA-KDIILISIGNP--NRPNKAVKQLAIWVE 348 (518)
T ss_pred EeecHHHHhhcchHHHHHHHHHhCC---CCcEEEEEeeCCHHHHHHHHHhC-CCCEEEEeCCC--CCCCcceeEEEEecc
Confidence 9999999999999999999998885 47999999999999999988887 45655554432 234456778777787
Q ss_pred chhhhhhhhHHHHhhc-CCCeEEEEecChHHHHHHHHhCC-----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccc
Q 008207 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419 (574)
Q Consensus 346 ~~~~~~~l~~ll~~~~-~~~~~lVF~~t~~~~~~l~~~l~-----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~ 419 (574)
...+...+..++.... ..+++||||+++..++.++..|. .+..+||++++.+|..+++.|++|+.+|||||+++
T Consensus 349 ~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl 428 (518)
T PLN00206 349 TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVL 428 (518)
T ss_pred chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHh
Confidence 7777777777776542 34689999999999999998885 46689999999999999999999999999999999
Q ss_pred cccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHH
Q 008207 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERE 476 (574)
Q Consensus 420 ~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~ 476 (574)
+||||+|+|++|||||+|.+..+|+||+|||||.|..|.+++|+++. ...+..+.+.
T Consensus 429 ~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~ 486 (518)
T PLN00206 429 GRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVAL 486 (518)
T ss_pred hccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987 4445555444
No 24
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.1e-62 Score=517.14 Aligned_cols=362 Identities=34% Similarity=0.531 Sum_probs=321.5
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCe
Q 008207 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPS 189 (574)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~ 189 (574)
.|++|++++.+++.|.++||..|+++|.++|+.++.|+|++++||||+|||++|++|+++.+...... ....++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~------~~~~~~ 75 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR------KSGPPR 75 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc------CCCCce
Confidence 58999999999999999999999999999999999999999999999999999999999998754221 123568
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecC
Q 008207 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269 (574)
Q Consensus 190 ~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDE 269 (574)
+||++||++||.|+++.+..++...++.+..++||..+..+...+..+++|+|+|||+|++++.++.+.+.++++||+||
T Consensus 76 ~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDE 155 (434)
T PRK11192 76 ILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDE 155 (434)
T ss_pred EEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEEC
Confidence 99999999999999999999999999999999999999988888888899999999999999999999999999999999
Q ss_pred chhhhcCCcHHHHHHHHHhccCccCceEEEEeccCch-hHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCc-h
Q 008207 270 ADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS-WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS-S 347 (574)
Q Consensus 270 ah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~ 347 (574)
||+|++++|...+..+...++. ..|+++||||++. .+..+...++ ..+..+..... .....++.+++..+.. .
T Consensus 156 ah~~l~~~~~~~~~~i~~~~~~--~~q~~~~SAT~~~~~~~~~~~~~~-~~~~~i~~~~~--~~~~~~i~~~~~~~~~~~ 230 (434)
T PRK11192 156 ADRMLDMGFAQDIETIAAETRW--RKQTLLFSATLEGDAVQDFAERLL-NDPVEVEAEPS--RRERKKIHQWYYRADDLE 230 (434)
T ss_pred HHHHhCCCcHHHHHHHHHhCcc--ccEEEEEEeecCHHHHHHHHHHHc-cCCEEEEecCC--cccccCceEEEEEeCCHH
Confidence 9999999999999999988876 6799999999985 5777777776 56666655433 2445567777776653 5
Q ss_pred hhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccC
Q 008207 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423 (574)
Q Consensus 348 ~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gl 423 (574)
.+...+..++... ...++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|+++|||||++++|||
T Consensus 231 ~k~~~l~~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~Gi 309 (434)
T PRK11192 231 HKTALLCHLLKQP-EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGI 309 (434)
T ss_pred HHHHHHHHHHhcC-CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCc
Confidence 6777777777643 56799999999999999999987 577899999999999999999999999999999999999
Q ss_pred CCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHHhCCccee
Q 008207 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEH 483 (574)
Q Consensus 424 di~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~ 483 (574)
|+|+|++|||||+|.+...|+||+|||||+|..|.+++|++.. ...+..+++++...+..
T Consensus 310 Dip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~~ 370 (434)
T PRK11192 310 DIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLKA 370 (434)
T ss_pred cCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999987 67788888887766544
No 25
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=3.7e-65 Score=484.14 Aligned_cols=352 Identities=34% Similarity=0.538 Sum_probs=304.4
Q ss_pred CCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCC
Q 008207 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (574)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 185 (574)
....+|.++.++..+++.|++.|+.+|||+|.+.+|.++.|+|+|..|-||||||++|.+|++...+...... .-..+
T Consensus 167 PPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~l--Pf~~~ 244 (610)
T KOG0341|consen 167 PPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMML--PFARG 244 (610)
T ss_pred CchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcC--ccccC
Confidence 3446789999999999999999999999999999999999999999999999999999999987665433221 12346
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHHhhC------CCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccC
Q 008207 186 RAPSVLVLLPTRELAKQVHEDFDVYGG------AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDL 259 (574)
Q Consensus 186 ~~~~~Lil~PtreLa~Qv~~~~~~~~~------~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l 259 (574)
.+|..||+||+||||.|.++.+..+.. ...++...+.||.+...|....+.+.||+|+|||||.|++....+.|
T Consensus 245 EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sL 324 (610)
T KOG0341|consen 245 EGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSL 324 (610)
T ss_pred CCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccH
Confidence 789999999999999999998876543 34578899999999999999999999999999999999999999999
Q ss_pred CCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeE
Q 008207 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRH 339 (574)
Q Consensus 260 ~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~ 339 (574)
.-++|+++||||+|+++||.+++..|+.++.. .+|+++||||||..+..+++.-+ ..|..+++..- ...+.++-|
T Consensus 325 d~CRyL~lDEADRmiDmGFEddir~iF~~FK~--QRQTLLFSATMP~KIQ~FAkSAL-VKPvtvNVGRA--GAAsldViQ 399 (610)
T KOG0341|consen 325 DACRYLTLDEADRMIDMGFEDDIRTIFSFFKG--QRQTLLFSATMPKKIQNFAKSAL-VKPVTVNVGRA--GAASLDVIQ 399 (610)
T ss_pred HHHHHhhhhhHHHHhhccchhhHHHHHHHHhh--hhheeeeeccccHHHHHHHHhhc-ccceEEecccc--cccchhHHH
Confidence 99999999999999999999999999999988 78999999999999999999888 56666655332 233444433
Q ss_pred EEEeCCchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEE
Q 008207 340 IVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVA 415 (574)
Q Consensus 340 ~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLva 415 (574)
-+-.+..+.+.-.+..-|+. ...++||||..+..++.+.++|- .+..+||+-.|++|...++.|+.|+-+||||
T Consensus 400 evEyVkqEaKiVylLeCLQK--T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVA 477 (610)
T KOG0341|consen 400 EVEYVKQEAKIVYLLECLQK--TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVA 477 (610)
T ss_pred HHHHHHhhhhhhhHHHHhcc--CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEE
Confidence 33333344444444444433 45699999999999999999876 5678999999999999999999999999999
Q ss_pred eccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 416 Td~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
||+++.|+|+|++.||||||+|...+.|+||+|||||.|+.|.+.+|++..
T Consensus 478 TDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~ 528 (610)
T KOG0341|consen 478 TDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKN 528 (610)
T ss_pred ecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeeccc
Confidence 999999999999999999999999999999999999999999999999987
No 26
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-62 Score=478.03 Aligned_cols=351 Identities=34% Similarity=0.553 Sum_probs=319.5
Q ss_pred CCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCC
Q 008207 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (574)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 185 (574)
.+...|..|+++..|..++.+.-|.+|||+|.+++|..+.|+|++..|.||||||.||+.|++.++...+.-. ++
T Consensus 220 rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~-----~g 294 (731)
T KOG0339|consen 220 RPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELK-----PG 294 (731)
T ss_pred CCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhc-----CC
Confidence 3446789999999999999999999999999999999999999999999999999999999999998765432 36
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEE
Q 008207 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (574)
Q Consensus 186 ~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~l 265 (574)
.+|.+||++||||||.||+.++++|++..+++++++|||.+...|...|..++.|||||||||++++.-+..++.++.+|
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~L 374 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYL 374 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCC
Q 008207 266 VLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (574)
Q Consensus 266 VlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 345 (574)
||||||+|+++||..++..|..++.. .+|+|+||||++..+..+++.+| .++..+... +.......|.|.+..|.
T Consensus 375 V~DEadrmfdmGfe~qVrSI~~hirp--drQtllFsaTf~~kIe~lard~L-~dpVrvVqg--~vgean~dITQ~V~V~~ 449 (731)
T KOG0339|consen 375 VLDEADRMFDMGFEPQVRSIKQHIRP--DRQTLLFSATFKKKIEKLARDIL-SDPVRVVQG--EVGEANEDITQTVSVCP 449 (731)
T ss_pred EEechhhhhccccHHHHHHHHhhcCC--cceEEEeeccchHHHHHHHHHHh-cCCeeEEEe--ehhccccchhheeeecc
Confidence 99999999999999999999999987 89999999999999999999999 455544332 22345567777776665
Q ss_pred c-hhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEecccc
Q 008207 346 S-SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420 (574)
Q Consensus 346 ~-~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~ 420 (574)
+ ..|...|..-|......+++|||+.-+..++.++..|. .+..+||++.|.+|.+++..|+.+...|||+||+++
T Consensus 450 s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaa 529 (731)
T KOG0339|consen 450 SEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAA 529 (731)
T ss_pred CcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhh
Confidence 4 44555555555555577899999999999999999987 788999999999999999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 421 ~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
||+||+.+..|||||+-.+.+.|.||+|||||+|..|.+|++++++
T Consensus 530 rgldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeK 575 (731)
T KOG0339|consen 530 RGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEK 575 (731)
T ss_pred cCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechh
Confidence 9999999999999999999999999999999999999999999987
No 27
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.4e-61 Score=510.68 Aligned_cols=370 Identities=33% Similarity=0.542 Sum_probs=325.9
Q ss_pred CCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCC
Q 008207 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (574)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 185 (574)
.....|.+++|++.++++|.+.||..||++|.++|+.++.|+|+|++|+||||||++|++|+++.+........ ...
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~---~~~ 160 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKE---RYM 160 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccc---ccc
Confidence 44567899999999999999999999999999999999999999999999999999999999999876532110 112
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhc-CCCcEEEEChHHHHHhHhcCCccCCCceE
Q 008207 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK-KGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (574)
Q Consensus 186 ~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~ 264 (574)
..+++|||+||++||.|+++.+..+....++.+..++||.+...+...+. ..++|+|+||++|++++.++...++++++
T Consensus 161 ~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~ 240 (475)
T PRK01297 161 GEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEV 240 (475)
T ss_pred CCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCce
Confidence 35789999999999999999999999888999999999998888777664 56899999999999999988888999999
Q ss_pred EEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeC
Q 008207 265 RVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344 (574)
Q Consensus 265 lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~ 344 (574)
|||||||++++++|...+..++..++.....|+++||||++..+..+...++ ..+..+.+.... ....++.+.++.+
T Consensus 241 lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~~~~~~~~~ 317 (475)
T PRK01297 241 MVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWT-TDPAIVEIEPEN--VASDTVEQHVYAV 317 (475)
T ss_pred EEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhc-cCCEEEEeccCc--CCCCcccEEEEEe
Confidence 9999999999999999999999998765567999999999999999999888 456666554332 3344566666677
Q ss_pred CchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEecccc
Q 008207 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420 (574)
Q Consensus 345 ~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~ 420 (574)
....+...+..++... ...++||||+++..++.++..|. .+..+||++++.+|..+++.|++|+++|||||++++
T Consensus 318 ~~~~k~~~l~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~ 396 (475)
T PRK01297 318 AGSDKYKLLYNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAG 396 (475)
T ss_pred cchhHHHHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccc
Confidence 7777778888877654 45799999999999999999886 567899999999999999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHHhCCcce
Q 008207 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFE 482 (574)
Q Consensus 421 ~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~ 482 (574)
+|||++++++||+||+|.+..+|+||+||+||.|+.|.+++|+++. ..++..+++.++.+++
T Consensus 397 ~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~ 459 (475)
T PRK01297 397 RGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKIS 459 (475)
T ss_pred cCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999999999999999999987 6678899999998875
No 28
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-61 Score=473.72 Aligned_cols=359 Identities=30% Similarity=0.492 Sum_probs=309.4
Q ss_pred CcccccCCCHHHH----------HHHHHCCCCCCcHHHHHHHHHHh---------cCCcEEEEccCCChhHHHhHHHHHH
Q 008207 109 NAVSRFRISVPLR----------EKLKSKGIESLFPIQAMTFDMVL---------DGSDLVGRARTGQGKTLAFVLPILE 169 (574)
Q Consensus 109 ~~~~~~~l~~~l~----------~~l~~~g~~~~~~~Q~~~i~~il---------~~~dvi~~a~TGsGKTla~~lpil~ 169 (574)
..|+.++++..+. .++.+++++.++|+|..++|+++ ..+|++|.||||||||++|.+||++
T Consensus 127 q~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ 206 (620)
T KOG0350|consen 127 QIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQ 206 (620)
T ss_pred eeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHH
Confidence 3456666665544 45899999999999999999986 2589999999999999999999999
Q ss_pred HHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCC-----CcEEEEC
Q 008207 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKG-----IDVVIGT 244 (574)
Q Consensus 170 ~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~-----~~IlV~T 244 (574)
.+...+. +..||+||+|||+|+.||++.|..+..+.++.|+.+.|..+...+...+.+. .||+|+|
T Consensus 207 ~L~~R~v---------~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaT 277 (620)
T KOG0350|consen 207 LLSSRPV---------KRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVAT 277 (620)
T ss_pred HHccCCc---------cceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcC
Confidence 9987653 3478999999999999999999999999999999999999998888887643 3899999
Q ss_pred hHHHHHhHhc-CCccCCCceEEEecCchhhhcCCcHHHHHHHHHhccCc-------------------------------
Q 008207 245 PGRIKDHIER-GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA------------------------------- 292 (574)
Q Consensus 245 p~~l~~~l~~-~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~------------------------------- 292 (574)
||||++|+.+ ..++|++++|+||||||+|++..|.+|+..++..+...
T Consensus 278 PGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~ 357 (620)
T KOG0350|consen 278 PGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKL 357 (620)
T ss_pred chHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCc
Confidence 9999999985 67899999999999999999999999988887665432
Q ss_pred -cCceEEEEeccCchhHHHHHHHhcccCCeEEEEec--CcccccccceeEEEEeCCchhhhhhhhHHHHhhcCCCeEEEE
Q 008207 293 -NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVG--NEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIF 369 (574)
Q Consensus 293 -~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF 369 (574)
++.+.++||||+...-..+...-+ ..|....+.. ...+..+..+.+.++.+....+...+..++... ...++|+|
T Consensus 358 ~~~l~kL~~satLsqdP~Kl~~l~l-~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~-k~~r~lcf 435 (620)
T KOG0350|consen 358 YPPLWKLVFSATLSQDPSKLKDLTL-HIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN-KLNRTLCF 435 (620)
T ss_pred CchhHhhhcchhhhcChHHHhhhhc-CCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh-hcceEEEE
Confidence 235688999999887777777666 4454443332 234567778888888888888888888888876 66899999
Q ss_pred ecChHHHHHHHHhCC--------CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEeCCCCCHh
Q 008207 370 TETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVE 441 (574)
Q Consensus 370 ~~t~~~~~~l~~~l~--------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~ 441 (574)
+++.+.+.+++..|. .+..+.|.++.+.|.+.++.|..|.++||||||+++||||+.+|+.|||||+|.+..
T Consensus 436 ~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~k 515 (620)
T KOG0350|consen 436 VNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDK 515 (620)
T ss_pred ecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhh
Confidence 999999999999886 566799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccCCCcceEEEEECCC-chHHHHHHHHhC
Q 008207 442 AYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESG 478 (574)
Q Consensus 442 ~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~~~ 478 (574)
+|+||+|||||+|+.|.||++.+.. ...+.++.+..+
T Consensus 516 tyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~ 553 (620)
T KOG0350|consen 516 TYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTN 553 (620)
T ss_pred HHHHhhcccccccCCceEEEeeccccchHHHHHHHHhc
Confidence 9999999999999999999999988 677777776654
No 29
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-61 Score=456.58 Aligned_cols=370 Identities=31% Similarity=0.476 Sum_probs=327.4
Q ss_pred CCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCC
Q 008207 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183 (574)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~--~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~ 183 (574)
....+|++++|.|++++.|..++|..|+.||..++|.++.. +++|.+++.|+|||.||.+.+|.++...
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~--------- 157 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD--------- 157 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc---------
Confidence 34468999999999999999999999999999999999965 7899999999999999999999888654
Q ss_pred CCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhc-CCccCCCc
Q 008207 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLSSL 262 (574)
Q Consensus 184 ~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~-~~~~l~~~ 262 (574)
...|+++.|+||||||.|+-+.+.+.|++.+++......|.. +.+...-..+|+|+|||.++|++.+ ..+++..+
T Consensus 158 -~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk---~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~ki 233 (477)
T KOG0332|consen 158 -VVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSK---AKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKI 233 (477)
T ss_pred -ccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcc---cccCCcchhheeeCCCccHHHHHHHHHhhChhhc
Confidence 456789999999999999999999999999888887776652 1111122368999999999999988 78889999
Q ss_pred eEEEecCchhhhc-CCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEE
Q 008207 263 KFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV 341 (574)
Q Consensus 263 ~~lVlDEah~~l~-~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~ 341 (574)
+++|+||||.|++ .||.++-..|...+|. +.|.++||||+...+..++.+++ .++..+.+.... ....++.|+|
T Consensus 234 kvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~--~~QllLFSATf~e~V~~Fa~kiv-pn~n~i~Lk~ee--l~L~~IkQly 308 (477)
T KOG0332|consen 234 KVFVLDEADVMIDTQGFQDQSIRIMRSLPR--NQQLLLFSATFVEKVAAFALKIV-PNANVIILKREE--LALDNIKQLY 308 (477)
T ss_pred eEEEecchhhhhhcccccccchhhhhhcCC--cceEEeeechhHHHHHHHHHHhc-CCCceeeeehhh--ccccchhhhe
Confidence 9999999999986 5799999999999986 78999999999999999999999 677777666544 6678899999
Q ss_pred EeCCc-hhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEe
Q 008207 342 LPCSS-SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416 (574)
Q Consensus 342 ~~~~~-~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT 416 (574)
+.|.. ..|..+|.++.... .-+..||||.|+..|..|+..|. .+..+||+|...+|..++++|+.|..+|||+|
T Consensus 309 v~C~~~~~K~~~l~~lyg~~-tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitT 387 (477)
T KOG0332|consen 309 VLCACRDDKYQALVNLYGLL-TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITT 387 (477)
T ss_pred eeccchhhHHHHHHHHHhhh-hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEe
Confidence 99875 56788888865544 56789999999999999999987 78899999999999999999999999999999
Q ss_pred ccccccCCCCCCcEEEEeCCCC------CHhHHHHHhcccccCCCcceEEEEECCC--chHHHHHHHHhCCcceecCCCC
Q 008207 417 NVAARGLDINDVQLIIQCEPPR------DVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERESGVKFEHISAPQ 488 (574)
Q Consensus 417 d~~~~Gldi~~v~~VI~~d~p~------s~~~yiqr~GR~gR~g~~G~~i~l~~~~--~~~~~~i~~~~~~~~~~~~~~~ 488 (574)
++++||||++.|++|||||+|. ++++|+||+|||||.|+.|.+|.|++.. ...+..|+++++.++.++.+.+
T Consensus 388 nV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d 467 (477)
T KOG0332|consen 388 NVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDD 467 (477)
T ss_pred chhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCcc
Confidence 9999999999999999999995 6899999999999999999999999987 5667899999999999998877
Q ss_pred HHHHHH
Q 008207 489 PADIAK 494 (574)
Q Consensus 489 ~~~i~~ 494 (574)
.+++.+
T Consensus 468 ~~E~ek 473 (477)
T KOG0332|consen 468 LDELEK 473 (477)
T ss_pred HHHHHH
Confidence 777664
No 30
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-60 Score=454.46 Aligned_cols=361 Identities=30% Similarity=0.514 Sum_probs=333.9
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 008207 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (574)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (574)
.+|++++|++.|++.+...||+.|+.||+.+|.++..|.|+++++++|+|||.+|++++++.+.-.. ...
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~----------ke~ 95 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSV----------KET 95 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcch----------HHH
Confidence 4799999999999999999999999999999999999999999999999999999999999885432 344
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhc-CCCcEEEEChHHHHHhHhcCCccCCCceEEEe
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK-KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVl 267 (574)
+||+++|||+||.|+......++...++++..+.||.++..+...+. ..++|+|+||||+.+++.++.+....++++|+
T Consensus 96 qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvl 175 (397)
T KOG0327|consen 96 QALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVL 175 (397)
T ss_pred HHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEee
Confidence 69999999999999999999999999999999999999987766554 46999999999999999999888899999999
Q ss_pred cCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCch
Q 008207 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (574)
Q Consensus 268 DEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 347 (574)
||||+|+..||.+++..|+..+|. +.|++++|||+|.|+..+.+.|+ .++..+.+.... .+...+.|+|+.....
T Consensus 176 DEaDEmLs~gfkdqI~~if~~lp~--~vQv~l~SAT~p~~vl~vt~~f~-~~pv~i~vkk~~--ltl~gikq~~i~v~k~ 250 (397)
T KOG0327|consen 176 DEADEMLSRGFKDQIYDIFQELPS--DVQVVLLSATMPSDVLEVTKKFM-REPVRILVKKDE--LTLEGIKQFYINVEKE 250 (397)
T ss_pred cchHhhhccchHHHHHHHHHHcCc--chhheeecccCcHHHHHHHHHhc-cCceEEEecchh--hhhhheeeeeeecccc
Confidence 999999999999999999999998 78999999999999999999999 577777665544 6678899999999888
Q ss_pred hhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccC
Q 008207 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423 (574)
Q Consensus 348 ~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gl 423 (574)
.|...|+++.+ .-...+|||||++.+..+...|. .+..+||+|.+.+|..+++.|+.|..+|||.|+.++||+
T Consensus 251 ~k~~~l~dl~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argi 327 (397)
T KOG0327|consen 251 EKLDTLCDLYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGI 327 (397)
T ss_pred ccccHHHHHHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeecccccccc
Confidence 89999999988 44688999999999999999987 677899999999999999999999999999999999999
Q ss_pred CCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHHhCCcceecCCC
Q 008207 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487 (574)
Q Consensus 424 di~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~~ 487 (574)
|+..++.||||++|...++|+||+||+||.|++|.++.++... ...++++++.++..+++++..
T Consensus 328 dv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~ 392 (397)
T KOG0327|consen 328 DVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSN 392 (397)
T ss_pred chhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccc
Confidence 9999999999999999999999999999999999999999998 889999999999999987754
No 31
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=3.3e-58 Score=481.68 Aligned_cols=364 Identities=32% Similarity=0.524 Sum_probs=318.7
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 008207 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (574)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (574)
..+|+++++++.+.++|.+.||..|+|+|.++|+.+++|+|++++||||||||++|++|+++.+... ..+
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~----------~~~ 96 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD----------LNA 96 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC----------CCC
Confidence 4679999999999999999999999999999999999999999999999999999999999887532 234
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEe
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVl 267 (574)
.++|||+||++|+.|+.+.+..++...++.+..++|+.....+...+..+++|+|+||++|.+++.++.+.++++++||+
T Consensus 97 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvVi 176 (401)
T PTZ00424 97 CQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFIL 176 (401)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEE
Confidence 57999999999999999999999888888999999999888777788888999999999999999988888999999999
Q ss_pred cCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCc-
Q 008207 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS- 346 (574)
Q Consensus 268 DEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~- 346 (574)
||||++++.+|...+..++..++. ..|++++|||+|..+..+...++. .+..+.+.... .....+.+.+..+..
T Consensus 177 DEah~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 251 (401)
T PTZ00424 177 DEADEMLSRGFKGQIYDVFKKLPP--DVQVALFSATMPNEILELTTKFMR-DPKRILVKKDE--LTLEGIRQFYVAVEKE 251 (401)
T ss_pred ecHHHHHhcchHHHHHHHHhhCCC--CcEEEEEEecCCHHHHHHHHHHcC-CCEEEEeCCCC--cccCCceEEEEecChH
Confidence 999999999999999999988876 789999999999999888888883 44444333222 234456666666554
Q ss_pred hhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEecccccc
Q 008207 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (574)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~G 422 (574)
..+...+..++... ...++||||+++..++.++..|. .+..+||++++.+|..+++.|++|+++|||||+++++|
T Consensus 252 ~~~~~~l~~~~~~~-~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~G 330 (401)
T PTZ00424 252 EWKFDTLCDLYETL-TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARG 330 (401)
T ss_pred HHHHHHHHHHHHhc-CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCC
Confidence 33555566665543 45789999999999999999886 57789999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHHhCCcceecCCC
Q 008207 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487 (574)
Q Consensus 423 ldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~~ 487 (574)
||+|++++||+||+|.+...|+||+||+||.|+.|.|++|+++. ...+..+++..+..+++....
T Consensus 331 iDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~ 396 (401)
T PTZ00424 331 IDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPME 396 (401)
T ss_pred cCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCcc
Confidence 99999999999999999999999999999999999999999988 778899999998888775543
No 32
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-58 Score=493.13 Aligned_cols=369 Identities=34% Similarity=0.562 Sum_probs=329.0
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCC
Q 008207 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (574)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (574)
...+|...|++..++..++++||..|+|||.++||+|+.|+|||++|.||||||++|++|++.++...+.. ..+.
T Consensus 363 pv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~-----~~gd 437 (997)
T KOG0334|consen 363 PVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPL-----EEGD 437 (997)
T ss_pred ccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCCh-----hhCC
Confidence 34678899999999999999999999999999999999999999999999999999999999666655432 2356
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCcc---CCCce
Q 008207 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNID---LSSLK 263 (574)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~---l~~~~ 263 (574)
+|-+||++|||+||.|++++++.|...++++++++|||.....|...+++++.|+||||||+++++..+.-. +..+.
T Consensus 438 GPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t 517 (997)
T KOG0334|consen 438 GPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVT 517 (997)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999998655444 45555
Q ss_pred EEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEe
Q 008207 264 FRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343 (574)
Q Consensus 264 ~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 343 (574)
+||+||||+|++++|.+++..|+..++. .+|+++||||+|..+..+++..++ .|..+.+. ........+.+.+..
T Consensus 518 ~lv~deaDrmfdmgfePq~~~Ii~nlrp--drQtvlfSatfpr~m~~la~~vl~-~Pveiiv~--~~svV~k~V~q~v~V 592 (997)
T KOG0334|consen 518 YLVLDEADRMFDMGFEPQITRILQNLRP--DRQTVLFSATFPRSMEALARKVLK-KPVEIIVG--GRSVVCKEVTQVVRV 592 (997)
T ss_pred eeeechhhhhheeccCcccchHHhhcch--hhhhhhhhhhhhHHHHHHHHHhhc-CCeeEEEc--cceeEeccceEEEEE
Confidence 9999999999999999999999999976 889999999999999999999995 55544333 344677788888888
Q ss_pred CC-chhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEecc
Q 008207 344 CS-SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418 (574)
Q Consensus 344 ~~-~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~ 418 (574)
|. ...++..|..+|......+++||||..++.|..|...|. .+..+||+.++.+|..+++.|++|.+.+||||++
T Consensus 593 ~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsv 672 (997)
T KOG0334|consen 593 CAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSV 672 (997)
T ss_pred ecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhh
Confidence 88 889999999999988889999999999999999999887 3456999999999999999999999999999999
Q ss_pred ccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHHhCCcceecCCC
Q 008207 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487 (574)
Q Consensus 419 ~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~~ 487 (574)
++||||++.+.+|||||+|...+.|+||+|||||+|+.|.|++|++|. ..+.-.|.+.+ .+.....|
T Consensus 673 varGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al--~~~~~~~P 740 (997)
T KOG0334|consen 673 VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL--ELSKQPVP 740 (997)
T ss_pred hhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH--HhccCCCc
Confidence 999999999999999999999999999999999999999999999996 55555666665 34444444
No 33
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-59 Score=447.95 Aligned_cols=362 Identities=31% Similarity=0.441 Sum_probs=335.3
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 008207 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (574)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (574)
...|..+||+..+.+++.+.||.+|||+|+++||.++.++|++..|.||||||.||++|+++++.... ..+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s---------~~g 90 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS---------QTG 90 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc---------ccc
Confidence 46799999999999999999999999999999999999999999999999999999999999998764 346
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEe
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVl 267 (574)
.|+||++|||+||.|+.+.++.++.++++++++++||.+...|...+..++|||++|||+++...-.-.+.|+.+.|||+
T Consensus 91 ~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVf 170 (529)
T KOG0337|consen 91 LRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVF 170 (529)
T ss_pred cceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeee
Confidence 78999999999999999999999999999999999999999999999999999999999998887766788999999999
Q ss_pred cCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCch
Q 008207 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (574)
Q Consensus 268 DEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 347 (574)
||||+++.+||.+++..++..++. .+|+++||||+|..+..+++.-+ .+|..+.+.... .....++..+..+...
T Consensus 171 dEadrlfemgfqeql~e~l~rl~~--~~QTllfSatlp~~lv~fakaGl-~~p~lVRldvet--kise~lk~~f~~~~~a 245 (529)
T KOG0337|consen 171 DEADRLFEMGFQEQLHEILSRLPE--SRQTLLFSATLPRDLVDFAKAGL-VPPVLVRLDVET--KISELLKVRFFRVRKA 245 (529)
T ss_pred hhhhHHHhhhhHHHHHHHHHhCCC--cceEEEEeccCchhhHHHHHccC-CCCceEEeehhh--hcchhhhhheeeeccH
Confidence 999999999999999999999998 67999999999999999999888 678888766544 5667778888888999
Q ss_pred hhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccC
Q 008207 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423 (574)
Q Consensus 348 ~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gl 423 (574)
.+...|..++.......+++|||.|...++.+...|+ .+..++|.|++..|...+..|+.++..+||.||+++||+
T Consensus 246 ~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~ 325 (529)
T KOG0337|consen 246 EKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGL 325 (529)
T ss_pred HHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccC
Confidence 9999999999877666789999999999999999998 567899999999999999999999999999999999999
Q ss_pred CCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHHhCCccee
Q 008207 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEH 483 (574)
Q Consensus 424 di~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~ 483 (574)
|||..+.|||||+|.+...|+||+||++|+|+.|.+|.|+.+. ..++..+.-.+|..+.-
T Consensus 326 diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~ 386 (529)
T KOG0337|consen 326 DIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIF 386 (529)
T ss_pred CCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceee
Confidence 9999999999999999999999999999999999999999998 78888888888866543
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.7e-54 Score=476.88 Aligned_cols=368 Identities=19% Similarity=0.267 Sum_probs=288.2
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEe
Q 008207 115 RISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194 (574)
Q Consensus 115 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~ 194 (574)
.+++.+.++|.++||..||++|.++|+.+++|+|+++++|||||||+||++|+++.+... .++++|||+
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~-----------~~~~aL~l~ 88 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD-----------PRATALYLA 88 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC-----------CCcEEEEEc
Confidence 389999999999999999999999999999999999999999999999999999998753 245799999
Q ss_pred CcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCC----ccCCCceEEEecCc
Q 008207 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN----IDLSSLKFRVLDEA 270 (574)
Q Consensus 195 PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~----~~l~~~~~lVlDEa 270 (574)
|||+||.|+...++.++ ..++++..+.|+.+. .+...+..+++|+|+||++|...+.... ..++++++||||||
T Consensus 89 PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEa 166 (742)
T TIGR03817 89 PTKALAADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDEC 166 (742)
T ss_pred ChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeCh
Confidence 99999999999999887 457888887777764 4556667779999999999975443221 23789999999999
Q ss_pred hhhhcCCcHHHHHHHHHhccC-----ccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCC
Q 008207 271 DEMLRMGFVEDVELILGKVED-----ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (574)
Q Consensus 271 h~~l~~~~~~~~~~il~~l~~-----~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 345 (574)
|+|.+ .|..++..++..+.. ..++|+++||||+++... ++..++. .+..+ +.... .........+....
T Consensus 167 h~~~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g-~~~~~-i~~~~--~~~~~~~~~~~~p~ 240 (742)
T TIGR03817 167 HSYRG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIG-APVVA-VTEDG--SPRGARTVALWEPP 240 (742)
T ss_pred hhccC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcC-CCeEE-ECCCC--CCcCceEEEEecCC
Confidence 99965 477777766655532 125799999999998765 5666663 33222 22211 11111222221111
Q ss_pred ----------------chhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC------------CCccccccCCHHH
Q 008207 346 ----------------SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------------GARALHGDIQQSQ 397 (574)
Q Consensus 346 ----------------~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~------------~~~~lh~~~~~~~ 397 (574)
...+...+..++. .+.++||||+|++.++.++..+. .+..+||++++.+
T Consensus 241 ~~~~~~~~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~e 317 (742)
T TIGR03817 241 LTELTGENGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPED 317 (742)
T ss_pred ccccccccccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHH
Confidence 1123344445544 46799999999999999987653 4678999999999
Q ss_pred HHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC---chHHHHHH
Q 008207 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR---KSSVSKIE 474 (574)
Q Consensus 398 r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~---~~~~~~i~ 474 (574)
|.+++++|++|++++|||||++++||||+++++|||||+|.+..+|+||+|||||.|+.|.++++.... ...+..++
T Consensus 318 R~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~ 397 (742)
T TIGR03817 318 RRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPE 397 (742)
T ss_pred HHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998743 45566788
Q ss_pred HHhCCcceec-CCCCHHHHHHHHHHHHHHHH
Q 008207 475 RESGVKFEHI-SAPQPADIAKAAGVEAAETI 504 (574)
Q Consensus 475 ~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~ 504 (574)
+.++.+++.. ..|....+......-++.++
T Consensus 398 ~~~~~~~e~~~~~~~n~~il~~hl~~aa~e~ 428 (742)
T TIGR03817 398 ALFDRPVEATVFDPDNPYVLGPHLCCAAAEL 428 (742)
T ss_pred HHhcCCCccceeCCCcHHHHHHHHHHHHhcC
Confidence 8888888764 44777777765555555443
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=5.8e-56 Score=445.28 Aligned_cols=345 Identities=27% Similarity=0.458 Sum_probs=311.7
Q ss_pred CCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCC
Q 008207 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (574)
Q Consensus 105 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~ 184 (574)
...+..|+.+.|...++..|+..||..||++|..+||+++.+-|+|++|..|+|||++|.+.+++.+...
T Consensus 21 ~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~---------- 90 (980)
T KOG4284|consen 21 SNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR---------- 90 (980)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc----------
Confidence 3445678999999999999999999999999999999999999999999999999999999999888654
Q ss_pred CCCCeEEEEeCcHHHHHHHHHHHHHhhC-CCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCce
Q 008207 185 GRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (574)
Q Consensus 185 ~~~~~~Lil~PtreLa~Qv~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~ 263 (574)
...++++||+||||+|.||.+.+..++. +.|+++.+.+||+........++. ++|+|+||||+..+++.+.++.++++
T Consensus 91 ~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vr 169 (980)
T KOG4284|consen 91 SSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVR 169 (980)
T ss_pred cCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCcccee
Confidence 3567899999999999999999998876 568999999999998777666655 89999999999999999999999999
Q ss_pred EEEecCchhhhc-CCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEE
Q 008207 264 FRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (574)
Q Consensus 264 ~lVlDEah~~l~-~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 342 (574)
++||||||.|++ ..|.+++..|+..+|. .+|++.||||.|..+.+...+|| .++..|.+.... .....++|+++
T Consensus 170 lfVLDEADkL~~t~sfq~~In~ii~slP~--~rQv~a~SATYp~nLdn~Lsk~m-rdp~lVr~n~~d--~~L~GikQyv~ 244 (980)
T KOG4284|consen 170 LFVLDEADKLMDTESFQDDINIIINSLPQ--IRQVAAFSATYPRNLDNLLSKFM-RDPALVRFNADD--VQLFGIKQYVV 244 (980)
T ss_pred EEEeccHHhhhchhhHHHHHHHHHHhcch--hheeeEEeccCchhHHHHHHHHh-cccceeecccCC--ceeechhheee
Confidence 999999999998 5699999999999998 78999999999999999999999 688888876654 45567788776
Q ss_pred eCCch--------hhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCc
Q 008207 343 PCSSS--------ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410 (574)
Q Consensus 343 ~~~~~--------~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~ 410 (574)
..... .+...|..+++.. +-..+||||+....|+-++..|. .+.++.|.|+|++|..+++.++.-.+
T Consensus 245 ~~~s~nnsveemrlklq~L~~vf~~i-py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~ 323 (980)
T KOG4284|consen 245 AKCSPNNSVEEMRLKLQKLTHVFKSI-PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRV 323 (980)
T ss_pred eccCCcchHHHHHHHHHHHHHHHhhC-chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceE
Confidence 55432 3566777777765 45689999999999999999998 67789999999999999999999999
Q ss_pred cEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 411 ~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
+|||+||+.+||||-++|++|||.|+|.+.++|.||||||||.|..|.+++|+...
T Consensus 324 rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~ 379 (980)
T KOG4284|consen 324 RILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDE 379 (980)
T ss_pred EEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999877
No 36
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9e-55 Score=436.85 Aligned_cols=360 Identities=31% Similarity=0.479 Sum_probs=301.3
Q ss_pred cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEE
Q 008207 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193 (574)
Q Consensus 114 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil 193 (574)
|..+..+++.+...||..|+|+|.+++|.++.++|+++|||||||||++|.+|+++++...... ....+.+++|+
T Consensus 141 ~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~-----~~~~gl~a~Il 215 (593)
T KOG0344|consen 141 YSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQE-----KHKVGLRALIL 215 (593)
T ss_pred hhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcc-----cCccceEEEEe
Confidence 6689999999999999999999999999999999999999999999999999999999765421 12456789999
Q ss_pred eCcHHHHHHHHHHHHHhh--CCCCceEEEEeCCcch-HHHHHHhcCCCcEEEEChHHHHHhHhcCC--ccCCCceEEEec
Q 008207 194 LPTRELAKQVHEDFDVYG--GAVGLTSCCLYGGAPY-HAQEFKLKKGIDVVIGTPGRIKDHIERGN--IDLSSLKFRVLD 268 (574)
Q Consensus 194 ~PtreLa~Qv~~~~~~~~--~~~~~~~~~~~gg~~~-~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~--~~l~~~~~lVlD 268 (574)
.|||+||.|++.++..+. ...++++......... ..+.......++|+|+||-++..++..+. ++++++.++|+|
T Consensus 216 ~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~d 295 (593)
T KOG0344|consen 216 SPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVD 295 (593)
T ss_pred cchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeec
Confidence 999999999999999988 6666665544433221 12222233458999999999999998875 789999999999
Q ss_pred CchhhhcC-CcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCC-c
Q 008207 269 EADEMLRM-GFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS-S 346 (574)
Q Consensus 269 Eah~~l~~-~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~ 346 (574)
|||++++. +|..++..|+..+.. +...+-+||||++..+++++...+ .+...+.+. ........+.|-.+.|. .
T Consensus 296 EaD~lfe~~~f~~Qla~I~sac~s-~~i~~a~FSat~~~~VEE~~~~i~-~~~~~vivg--~~~sa~~~V~QelvF~gse 371 (593)
T KOG0344|consen 296 EADLLFEPEFFVEQLADIYSACQS-PDIRVALFSATISVYVEEWAELIK-SDLKRVIVG--LRNSANETVDQELVFCGSE 371 (593)
T ss_pred hHHhhhChhhHHHHHHHHHHHhcC-cchhhhhhhccccHHHHHHHHHhh-ccceeEEEe--cchhHhhhhhhhheeeecc
Confidence 99999999 999999999999976 467888999999999999999887 444444333 22344566777666665 4
Q ss_pred hhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC-----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccc
Q 008207 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421 (574)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~-----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~ 421 (574)
..+..++..++... -..++|||+.+.+.|..|+..|. .+.++||..++.+|..++++|+.|+++|||||++++|
T Consensus 372 ~~K~lA~rq~v~~g-~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~R 450 (593)
T KOG0344|consen 372 KGKLLALRQLVASG-FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLAR 450 (593)
T ss_pred hhHHHHHHHHHhcc-CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhc
Confidence 55777777777765 56799999999999999999994 7889999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHH---HhCCccee
Q 008207 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIER---ESGVKFEH 483 (574)
Q Consensus 422 Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~---~~~~~~~~ 483 (574)
|+|+.+|++|||||+|.+..+|+||+||+||+|+.|.+|+||+.. ...++.+.. .-|.++++
T Consensus 451 GiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~evpe 516 (593)
T KOG0344|consen 451 GIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGCEVPE 516 (593)
T ss_pred cccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCCcchH
Confidence 999999999999999999999999999999999999999999987 455554443 34554443
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=3.7e-50 Score=438.68 Aligned_cols=330 Identities=22% Similarity=0.276 Sum_probs=255.9
Q ss_pred cccCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeE
Q 008207 112 SRFRISVPLREKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSV 190 (574)
Q Consensus 112 ~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~ 190 (574)
..|+++..+...++. .||..++|+|.++|+.++.|+|+++++|||+|||++|++|++.. . ..+
T Consensus 440 ~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~---~-------------GiT 503 (1195)
T PLN03137 440 RNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC---P-------------GIT 503 (1195)
T ss_pred cCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---C-------------CcE
Confidence 368888888777765 69999999999999999999999999999999999999999842 1 248
Q ss_pred EEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhc------CCCcEEEEChHHHHH--hHhcC--Cc-cC
Q 008207 191 LVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK------KGIDVVIGTPGRIKD--HIERG--NI-DL 259 (574)
Q Consensus 191 Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~------~~~~IlV~Tp~~l~~--~l~~~--~~-~l 259 (574)
|||+|+++|+.++...+.. .++....+.++.....+...+. ..++|+|+||++|.. .+.+. .+ ..
T Consensus 504 LVISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~ 579 (1195)
T PLN03137 504 LVISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSR 579 (1195)
T ss_pred EEEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhc
Confidence 9999999999855444433 4688899999988776654432 468999999999853 22211 11 23
Q ss_pred CCceEEEecCchhhhcCC--cHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccce
Q 008207 260 SSLKFRVLDEADEMLRMG--FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337 (574)
Q Consensus 260 ~~~~~lVlDEah~~l~~~--~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 337 (574)
..+.+|||||||++++|| |+.++..+-......+..++++||||++..+.......+......+ +... ....++
T Consensus 580 ~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~v-fr~S---f~RpNL 655 (1195)
T PLN03137 580 GLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVV-FRQS---FNRPNL 655 (1195)
T ss_pred cccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEE-eecc---cCccce
Confidence 458999999999999998 7787765422111122578999999999988876666653322222 1111 222344
Q ss_pred eEEEEeCCchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEE
Q 008207 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTL 413 (574)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vL 413 (574)
...+... .......+..++.....+...||||+|+..++.++..|. .+..+||+|++.+|..+++.|..|+++||
T Consensus 656 ~y~Vv~k-~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VL 734 (1195)
T PLN03137 656 WYSVVPK-TKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINII 734 (1195)
T ss_pred EEEEecc-chhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEE
Confidence 3332221 122233445555443346789999999999999999887 67899999999999999999999999999
Q ss_pred EEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 414 vaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
|||++++||||+|+|++||||++|.+.+.|+||+|||||.|..|.|++||++.
T Consensus 735 VATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~ 787 (1195)
T PLN03137 735 CATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYS 787 (1195)
T ss_pred EEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHH
Confidence 99999999999999999999999999999999999999999999999999876
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.5e-49 Score=421.30 Aligned_cols=324 Identities=22% Similarity=0.287 Sum_probs=247.1
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHH
Q 008207 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (574)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~ 205 (574)
..||..|+|+|.++|+.++.|+|+++++|||||||++|++|++.. ...+|||+||++|+.|+..
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~----------------~~~~lVi~P~~~L~~dq~~ 69 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS----------------DGITLVISPLISLMEDQVL 69 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc----------------CCcEEEEecHHHHHHHHHH
Confidence 469999999999999999999999999999999999999999842 1248999999999999988
Q ss_pred HHHHhhCCCCceEEEEeCCcchHHHHH---H-hcCCCcEEEEChHHHHHhH-hcCCc-cCCCceEEEecCchhhhcCC--
Q 008207 206 DFDVYGGAVGLTSCCLYGGAPYHAQEF---K-LKKGIDVVIGTPGRIKDHI-ERGNI-DLSSLKFRVLDEADEMLRMG-- 277 (574)
Q Consensus 206 ~~~~~~~~~~~~~~~~~gg~~~~~~~~---~-l~~~~~IlV~Tp~~l~~~l-~~~~~-~l~~~~~lVlDEah~~l~~~-- 277 (574)
.+..+ ++.+..+.++.....+.. . ....++|+++||+++.... ....+ ...++++|||||||++++||
T Consensus 70 ~l~~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~ 145 (470)
T TIGR00614 70 QLKAS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHD 145 (470)
T ss_pred HHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccc
Confidence 88754 467777777766543322 1 2345899999999985432 11112 46789999999999999887
Q ss_pred cHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhhhhhhhHHH
Q 008207 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357 (574)
Q Consensus 278 ~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll 357 (574)
|...+..+.......+..++++||||++..+.......+......+.... ....++....... .......+..++
T Consensus 146 fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s----~~r~nl~~~v~~~-~~~~~~~l~~~l 220 (470)
T TIGR00614 146 FRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS----FDRPNLYYEVRRK-TPKILEDLLRFI 220 (470)
T ss_pred cHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC----CCCCCcEEEEEeC-CccHHHHHHHHH
Confidence 67766654322222235789999999999876665555432222222211 1122332222222 112333344444
Q ss_pred HhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEE
Q 008207 358 RCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ 433 (574)
Q Consensus 358 ~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~ 433 (574)
.....+..+||||+|++.++.++..|. .+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++|||
T Consensus 221 ~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~ 300 (470)
T TIGR00614 221 RKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIH 300 (470)
T ss_pred HHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEE
Confidence 433356677999999999999999986 5778999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHH
Q 008207 434 CEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIE 474 (574)
Q Consensus 434 ~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~ 474 (574)
|++|.+.+.|+||+|||||.|..|.|++|+++. ...++.+.
T Consensus 301 ~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~ 342 (470)
T TIGR00614 301 YSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLL 342 (470)
T ss_pred eCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHH
Confidence 999999999999999999999999999999987 44444443
No 39
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.5e-51 Score=366.86 Aligned_cols=334 Identities=27% Similarity=0.434 Sum_probs=291.1
Q ss_pred CCCCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccC
Q 008207 103 GESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKT 182 (574)
Q Consensus 103 ~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~ 182 (574)
+-+.+...|.+|-|.+++++++-..||..|+.+|.++||...-|-|++++|..|.|||.+|.+.-++.+.....
T Consensus 36 yv~ihssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g------ 109 (387)
T KOG0329|consen 36 YVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDG------ 109 (387)
T ss_pred EEEEeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCC------
Confidence 45567788999999999999999999999999999999999999999999999999999999999998865432
Q ss_pred CCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCC-CceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCC
Q 008207 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSS 261 (574)
Q Consensus 183 ~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~ 261 (574)
.+.+|++|.|||||.|+..++.+|.++. ++++.+.+||.++......+++.+||+|+||||++.+..++.+++++
T Consensus 110 ----~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~ 185 (387)
T KOG0329|consen 110 ----QVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKN 185 (387)
T ss_pred ----eEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhh
Confidence 3469999999999999999999998875 68999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCchhhhcC-CcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEE
Q 008207 262 LKFRVLDEADEMLRM-GFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340 (574)
Q Consensus 262 ~~~lVlDEah~~l~~-~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~ 340 (574)
++.+|+||||.|+.. ..+.++..|++..|. ..|+++||||++.+++...++|+ .+|-.|.+.+ +...+...++|+
T Consensus 186 vkhFvlDEcdkmle~lDMrRDvQEifr~tp~--~KQvmmfsatlskeiRpvC~kFm-QdPmEi~vDd-E~KLtLHGLqQ~ 261 (387)
T KOG0329|consen 186 VKHFVLDECDKMLEQLDMRRDVQEIFRMTPH--EKQVMMFSATLSKEIRPVCHKFM-QDPMEIFVDD-EAKLTLHGLQQY 261 (387)
T ss_pred cceeehhhHHHHHHHHHHHHHHHHHhhcCcc--cceeeeeeeecchhhHHHHHhhh-cCchhhhccc-hhhhhhhhHHHH
Confidence 999999999999853 578899999999987 67999999999999999999999 5666665544 334566788899
Q ss_pred EEeCCchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCCCCccccccCCHHHHHHHHHHHhCCCccEEEEecccc
Q 008207 341 VLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420 (574)
Q Consensus 341 ~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~ 420 (574)
|+......|...+.+++..+ .-..++||+.+... +. | ..+ +|||++++
T Consensus 262 YvkLke~eKNrkl~dLLd~L-eFNQVvIFvKsv~R--------------------------l~-f---~kr-~vat~lfg 309 (387)
T KOG0329|consen 262 YVKLKENEKNRKLNDLLDVL-EFNQVVIFVKSVQR--------------------------LS-F---QKR-LVATDLFG 309 (387)
T ss_pred HHhhhhhhhhhhhhhhhhhh-hhcceeEeeehhhh--------------------------hh-h---hhh-hHHhhhhc
Confidence 99999999999999999887 44689999988665 00 3 223 89999999
Q ss_pred ccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC--chHHHHHHHHhCCcce
Q 008207 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERESGVKFE 482 (574)
Q Consensus 421 ~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~--~~~~~~i~~~~~~~~~ 482 (574)
||+||..|+.|+|||+|.++.+|+||+|||||.|..|.+++|++.. ...+..+.......+.
T Consensus 310 rgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~ 373 (387)
T KOG0329|consen 310 RGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIK 373 (387)
T ss_pred cccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHh
Confidence 9999999999999999999999999999999999999999999876 3344555554444333
No 40
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=3.6e-48 Score=431.51 Aligned_cols=334 Identities=22% Similarity=0.379 Sum_probs=260.0
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 008207 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (574)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (574)
.|++++|++.+++.+.+.||..|+|+|.++++. ++.|+|++++||||||||++|.+|++..+..+ .
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~-------------~ 68 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARG-------------G 68 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcC-------------C
Confidence 478899999999999999999999999999998 77999999999999999999999999988532 2
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEec
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlD 268 (574)
++||++|+++||.|+++.|..++. .++++..++|+...... ....++|+|+||+++..++.++..++.++++||+|
T Consensus 69 kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViD 144 (737)
T PRK02362 69 KALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVD 144 (737)
T ss_pred cEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEE
Confidence 599999999999999999998754 47899999998764432 23458999999999988888766678999999999
Q ss_pred CchhhhcCCcHHHHHHHHHhccC-ccCceEEEEeccCchhHHHHHHHhcccCC-------eEE--EEecCccccccccee
Q 008207 269 EADEMLRMGFVEDVELILGKVED-ANKVQTLLFSATLPSWVKHISTKFLKSDK-------KTI--DLVGNEKMKASTNVR 338 (574)
Q Consensus 269 Eah~~l~~~~~~~~~~il~~l~~-~~~~q~ll~SAT~~~~~~~~~~~~~~~~~-------~~i--~~~~~~~~~~~~~i~ 338 (574)
|+|.+.+.+++..++.++..+.. .+..|+++||||+++. ..+. .|+.... ..+ .+.......... .
T Consensus 145 E~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la-~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~--~ 220 (737)
T PRK02362 145 EVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELA-DWLDAELVDSEWRPIDLREGVFYGGAIHFDD--S 220 (737)
T ss_pred CccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHH-HHhCCCcccCCCCCCCCeeeEecCCeecccc--c
Confidence 99999988888888888776642 2368999999999863 2333 3331110 000 000000000000 0
Q ss_pred EEEEeCCchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----------------------------------
Q 008207 339 HIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---------------------------------- 384 (574)
Q Consensus 339 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~---------------------------------- 384 (574)
+..+.. ..+...+..++.....++++||||+|+..++.++..|.
T Consensus 221 ~~~~~~--~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L 298 (737)
T PRK02362 221 QREVEV--PSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDL 298 (737)
T ss_pred cccCCC--ccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHH
Confidence 111111 11122333334444467899999999999877665442
Q ss_pred ------CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEE----eC-----CCCCHhHHHHHhcc
Q 008207 385 ------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----CE-----PPRDVEAYIHRSGR 449 (574)
Q Consensus 385 ------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~----~d-----~p~s~~~yiqr~GR 449 (574)
++.++||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.+..+|+||+||
T Consensus 299 ~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GR 378 (737)
T PRK02362 299 ADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGR 378 (737)
T ss_pred HHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhc
Confidence 4667899999999999999999999999999999999999999999997 76 68999999999999
Q ss_pred cccCCCc--ceEEEEECCC
Q 008207 450 TGRAGNT--GVAVMLYDPR 466 (574)
Q Consensus 450 ~gR~g~~--G~~i~l~~~~ 466 (574)
|||.|.. |.|++++...
T Consensus 379 AGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 379 AGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred CCCCCCCCCceEEEEecCc
Confidence 9999874 9999999765
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=5.8e-47 Score=425.33 Aligned_cols=371 Identities=19% Similarity=0.310 Sum_probs=263.0
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeC
Q 008207 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195 (574)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~P 195 (574)
+++.+.+.+.. +|..|||+|.++++.+++|+|++++||||||||++|.+|+++.+....... ....++++|||+|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~----~~~~~~~~LyIsP 92 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREG----ELEDKVYCLYVSP 92 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhcccc----CCCCCeEEEEEcC
Confidence 56777777665 799999999999999999999999999999999999999999887532110 1134678999999
Q ss_pred cHHHHHHHHHHHHH-------hh----CCC-CceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCc--cCCC
Q 008207 196 TRELAKQVHEDFDV-------YG----GAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI--DLSS 261 (574)
Q Consensus 196 treLa~Qv~~~~~~-------~~----~~~-~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~--~l~~ 261 (574)
||+|+.|+++.+.. +. ... ++++...+|+.+...+...+...++|+|+||++|..++.+..+ .+.+
T Consensus 93 traLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~ 172 (876)
T PRK13767 93 LRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRT 172 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhc
Confidence 99999999876542 22 233 6789999999998887778888899999999999887765433 4789
Q ss_pred ceEEEecCchhhhcCCcHHHHHHHHHhccC--ccCceEEEEeccCchhHHHHHHHhcccC-----CeEEEEecCcccccc
Q 008207 262 LKFRVLDEADEMLRMGFVEDVELILGKVED--ANKVQTLLFSATLPSWVKHISTKFLKSD-----KKTIDLVGNEKMKAS 334 (574)
Q Consensus 262 ~~~lVlDEah~~l~~~~~~~~~~il~~l~~--~~~~q~ll~SAT~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~ 334 (574)
+++||+||+|.|++..+...+..++..+.. .+..|+++||||+++. ..+.. ++... +..+.+.... ....
T Consensus 173 l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~-~L~~~~~~~~~r~~~iv~~~-~~k~ 249 (876)
T PRK13767 173 VKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAK-FLVGYEDDGEPRDCEIVDAR-FVKP 249 (876)
T ss_pred CCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHH-HhcCccccCCCCceEEEccC-CCcc
Confidence 999999999999987766666555544432 1267999999999862 23332 22111 1111121111 0000
Q ss_pred cceeEEE-----EeCCchhhhhhh-hHHHHhhcCCCeEEEEecChHHHHHHHHhCC----------CCccccccCCHHHH
Q 008207 335 TNVRHIV-----LPCSSSARSQVI-PDIIRCYSSGGRTIIFTETKESASQLADLLP----------GARALHGDIQQSQR 398 (574)
Q Consensus 335 ~~i~~~~-----~~~~~~~~~~~l-~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----------~~~~lh~~~~~~~r 398 (574)
..+.... ...........+ ..+......++++||||||+..|+.++..|. .+..+||+|++.+|
T Consensus 250 ~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R 329 (876)
T PRK13767 250 FDIKVISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVR 329 (876)
T ss_pred ceEEEeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHH
Confidence 1111000 001111111122 2222223356789999999999999888765 37789999999999
Q ss_pred HHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCC-CcceEEEEECCCch---HHHHHH
Q 008207 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG-NTGVAVMLYDPRKS---SVSKIE 474 (574)
Q Consensus 399 ~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g-~~G~~i~l~~~~~~---~~~~i~ 474 (574)
..+++.|++|.++|||||+++++|||+|+|++||+|+.|.+...|+||+|||||.+ ..+.++++...... ....++
T Consensus 330 ~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~ 409 (876)
T PRK13767 330 LEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLK 409 (876)
T ss_pred HHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999874 33333333332222 222334
Q ss_pred HHhCCcceecCCCC-HHHHHH
Q 008207 475 RESGVKFEHISAPQ-PADIAK 494 (574)
Q Consensus 475 ~~~~~~~~~~~~~~-~~~i~~ 494 (574)
......++.+..|. ..++..
T Consensus 410 ~~~~~~ie~~~~~~~~~dvl~ 430 (876)
T PRK13767 410 KAREGKIDRVHIPKNPLDVLA 430 (876)
T ss_pred HHHhCCCCCCCCCCCcHHHHH
Confidence 44455566665554 344443
No 42
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.1e-47 Score=417.14 Aligned_cols=326 Identities=21% Similarity=0.302 Sum_probs=249.2
Q ss_pred cCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEE
Q 008207 114 FRISVPLREKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLV 192 (574)
Q Consensus 114 ~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Li 192 (574)
+++.....+.|++ .||..++|+|.++|+.++.|+|+++++|||+|||++|++|++.. . ..+||
T Consensus 7 ~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~--~--------------g~tlV 70 (607)
T PRK11057 7 LNLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL--D--------------GLTLV 70 (607)
T ss_pred CCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc--C--------------CCEEE
Confidence 3445555566654 69999999999999999999999999999999999999999842 1 13899
Q ss_pred EeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHH----hcCCCcEEEEChHHHHHhHhcCCccCCCceEEEec
Q 008207 193 LLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK----LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268 (574)
Q Consensus 193 l~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~----l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlD 268 (574)
|+|+++|+.|+.+.+..+ ++.+.++.++.+...+... .....+|+++||++|........+...++++||||
T Consensus 71 isPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVID 146 (607)
T PRK11057 71 VSPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVD 146 (607)
T ss_pred EecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEe
Confidence 999999999999988764 4667777777665543322 23458999999999974322223445678999999
Q ss_pred CchhhhcCC--cHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCc
Q 008207 269 EADEMLRMG--FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (574)
Q Consensus 269 Eah~~l~~~--~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 346 (574)
|||+++++| |..++..+.......+..++++||||++..+.......+......+.... ....++..... ..
T Consensus 147 EaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~----~~r~nl~~~v~--~~ 220 (607)
T PRK11057 147 EAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS----FDRPNIRYTLV--EK 220 (607)
T ss_pred CccccccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECC----CCCCcceeeee--ec
Confidence 999999887 66665544322222235789999999998876544444422222332221 11223322221 22
Q ss_pred hhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEecccccc
Q 008207 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (574)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~G 422 (574)
......+..++... .+.++||||+|++.++.++..|. .+..+||+|++.+|..+++.|++|+++|||||+++++|
T Consensus 221 ~~~~~~l~~~l~~~-~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~G 299 (607)
T PRK11057 221 FKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMG 299 (607)
T ss_pred cchHHHHHHHHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhcc
Confidence 22333444444433 56799999999999999999997 57789999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 423 ldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
||+|+|++|||||+|.|.+.|+||+|||||.|.+|.|++|+++.
T Consensus 300 IDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~ 343 (607)
T PRK11057 300 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPA 343 (607)
T ss_pred CCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHH
Confidence 99999999999999999999999999999999999999999987
No 43
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=4.5e-47 Score=409.41 Aligned_cols=314 Identities=21% Similarity=0.257 Sum_probs=244.7
Q ss_pred CCCCCCcHHHHHHHHHHhcCC-cEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEE-EeCcHHHHHHHH
Q 008207 127 KGIESLFPIQAMTFDMVLDGS-DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLV-LLPTRELAKQVH 204 (574)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~~~-dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Li-l~PtreLa~Qv~ 204 (574)
.||. |||||.++|+.++.|+ ++++++|||||||.+|.++++.. ... ...++.|| ++|||+||.|++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~----------~~~~~rLv~~vPtReLa~Qi~ 79 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG----------AKVPRRLVYVVNRRTVVDQVT 79 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc----------ccccceEEEeCchHHHHHHHH
Confidence 4887 9999999999999998 58888999999999877666532 111 23455665 669999999999
Q ss_pred HHHHHhhCCC-----------------------CceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCcc---
Q 008207 205 EDFDVYGGAV-----------------------GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNID--- 258 (574)
Q Consensus 205 ~~~~~~~~~~-----------------------~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~--- 258 (574)
+.+..++... ++++.+++||.+...|...+..+++|||+|+ |++.++.++
T Consensus 80 ~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gY 155 (844)
T TIGR02621 80 EEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGY 155 (844)
T ss_pred HHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCcccccc
Confidence 9999888644 5889999999999999999999999999994 666555542
Q ss_pred -------------CCCceEEEecCchhhhcCCcHHHHHHHHHhc--cC-ccCceEEEEeccCchhHHHHHHHhcccCCeE
Q 008207 259 -------------LSSLKFRVLDEADEMLRMGFVEDVELILGKV--ED-ANKVQTLLFSATLPSWVKHISTKFLKSDKKT 322 (574)
Q Consensus 259 -------------l~~~~~lVlDEah~~l~~~~~~~~~~il~~l--~~-~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~ 322 (574)
+.++++||||||| ++++|.+++..|+..+ +. ..++|+++||||+|..+..+...++. .+..
T Consensus 156 g~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~-~p~~ 232 (844)
T TIGR02621 156 GCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSA-EDYK 232 (844)
T ss_pred ccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHcc-CCce
Confidence 7889999999999 6899999999999975 22 12379999999999988888777774 3444
Q ss_pred EEEecCcccccccceeEEEEeCCchhhhhhhhHHH-H-hhcCCCeEEEEecChHHHHHHHHhCC--CCccccccCCHHHH
Q 008207 323 IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII-R-CYSSGGRTIIFTETKESASQLADLLP--GARALHGDIQQSQR 398 (574)
Q Consensus 323 i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll-~-~~~~~~~~lVF~~t~~~~~~l~~~l~--~~~~lh~~~~~~~r 398 (574)
+.+... .....++.++ +.+....+...+...+ . ....++++||||||+..++.++..|. .+..+||+|++.+|
T Consensus 233 i~V~~~--~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~~lLHG~m~q~dR 309 (844)
T TIGR02621 233 HPVLKK--RLAAKKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKFELLTGTLRGAER 309 (844)
T ss_pred eecccc--cccccceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCCeEeeCCCCHHHH
Confidence 443322 2333455554 3444433333222221 1 12356789999999999999999997 55789999999999
Q ss_pred H-----HHHHHHhC----CC-------ccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcc-eEEE
Q 008207 399 E-----VTLAGFRS----GK-------FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG-VAVM 461 (574)
Q Consensus 399 ~-----~~~~~F~~----g~-------~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G-~~i~ 461 (574)
. .+++.|++ |. .+|||||+++++||||+. ++||++..| .++|+||+||+||.|+.| ..+.
T Consensus 310 ~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~ 386 (844)
T TIGR02621 310 DDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIA 386 (844)
T ss_pred hhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEE
Confidence 9 88999987 44 689999999999999987 899998877 689999999999999854 4466
Q ss_pred EECC
Q 008207 462 LYDP 465 (574)
Q Consensus 462 l~~~ 465 (574)
++.+
T Consensus 387 vv~~ 390 (844)
T TIGR02621 387 VVHL 390 (844)
T ss_pred EEee
Confidence 6644
No 44
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=3.6e-46 Score=406.84 Aligned_cols=317 Identities=22% Similarity=0.343 Sum_probs=250.7
Q ss_pred HHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHH
Q 008207 123 KLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (574)
Q Consensus 123 ~l~~-~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~ 201 (574)
.|++ .||.+++|+|.++|+.++.|+|+++++|||+|||++|++|++.. . ..++||+|+++|+.
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~--~--------------g~~lVisPl~sL~~ 67 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL--K--------------GLTVVISPLISLMK 67 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc--C--------------CcEEEEcCCHHHHH
Confidence 4543 79999999999999999999999999999999999999999832 1 13799999999999
Q ss_pred HHHHHHHHhhCCCCceEEEEeCCcchHHHHHH----hcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCC
Q 008207 202 QVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK----LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277 (574)
Q Consensus 202 Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~----l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~ 277 (574)
|+.+.+..+ ++.+..+.++.+....... .....+|+++||++|........+...++++|||||||++.++|
T Consensus 68 dq~~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g 143 (591)
T TIGR01389 68 DQVDQLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWG 143 (591)
T ss_pred HHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCccccccc
Confidence 999888765 4777888888776544332 24568999999999975443344556789999999999999877
Q ss_pred --cHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhhhhhhhH
Q 008207 278 --FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355 (574)
Q Consensus 278 --~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ 355 (574)
|...+..+.......+..++++||||.+..+.......+......+.... ....++..... ....+...+..
T Consensus 144 ~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~----~~r~nl~~~v~--~~~~~~~~l~~ 217 (591)
T TIGR01389 144 HDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFITS----FDRPNLRFSVV--KKNNKQKFLLD 217 (591)
T ss_pred CccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC----CCCCCcEEEEE--eCCCHHHHHHH
Confidence 77766665443332224569999999999887766666632222221111 11223322222 22334555666
Q ss_pred HHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEE
Q 008207 356 IIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLI 431 (574)
Q Consensus 356 ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~V 431 (574)
++... .+.++||||+|+..++.++..|. .+..+||+|++.+|..+++.|.+|.++|||||+++++|||+|+|++|
T Consensus 218 ~l~~~-~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~V 296 (591)
T TIGR01389 218 YLKKH-RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFV 296 (591)
T ss_pred HHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEE
Confidence 66544 36789999999999999999986 45789999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 432 IQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 432 I~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
|||++|.|.+.|+||+|||||.|..|.|+++|++.
T Consensus 297 I~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~ 331 (591)
T TIGR01389 297 IHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPA 331 (591)
T ss_pred EEcCCCCCHHHHhhhhccccCCCCCceEEEecCHH
Confidence 99999999999999999999999999999999876
No 45
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2.3e-45 Score=408.07 Aligned_cols=330 Identities=22% Similarity=0.332 Sum_probs=257.9
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 008207 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (574)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (574)
.|+++++++.+.+.|.+.||..|+|+|.++++. ++.|+|++++||||||||++|.+|++..+... +.
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~------------~~ 69 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE------------GG 69 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc------------CC
Confidence 467889999999999999999999999999986 78999999999999999999999999887642 23
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEec
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlD 268 (574)
++|||+|+++|+.|+++.+..+. ..++++..++|+.+.... ....++|+|+||+++..++.++..+++++++||+|
T Consensus 70 ~~l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViD 145 (720)
T PRK00254 70 KAVYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVAD 145 (720)
T ss_pred eEEEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEc
Confidence 69999999999999999998764 468999999998765422 23458999999999988887776778999999999
Q ss_pred CchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccc-cc-eeEEEEeCCc
Q 008207 269 EADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAS-TN-VRHIVLPCSS 346 (574)
Q Consensus 269 Eah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~-i~~~~~~~~~ 346 (574)
|+|.+.+.++...+..++..+.. .+|++++|||+++. ..+.. |+... . +. ........ .. +.+.+.....
T Consensus 146 E~H~l~~~~rg~~le~il~~l~~--~~qiI~lSATl~n~-~~la~-wl~~~-~-~~--~~~rpv~l~~~~~~~~~~~~~~ 217 (720)
T PRK00254 146 EIHLIGSYDRGATLEMILTHMLG--RAQILGLSATVGNA-EELAE-WLNAE-L-VV--SDWRPVKLRKGVFYQGFLFWED 217 (720)
T ss_pred CcCccCCccchHHHHHHHHhcCc--CCcEEEEEccCCCH-HHHHH-HhCCc-c-cc--CCCCCCcceeeEecCCeeeccC
Confidence 99999988899999999998876 68999999999863 44443 44221 1 10 00000000 00 0011111111
Q ss_pred h-------hhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC-----------------------------------
Q 008207 347 S-------ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----------------------------------- 384 (574)
Q Consensus 347 ~-------~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----------------------------------- 384 (574)
. .....+...+ ..++++||||+|+..++.++..|.
T Consensus 218 ~~~~~~~~~~~~~~~~~i---~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l 294 (720)
T PRK00254 218 GKIERFPNSWESLVYDAV---KKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKAL 294 (720)
T ss_pred cchhcchHHHHHHHHHHH---HhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 1 1112222333 356899999999999876553331
Q ss_pred --CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEE-------eCCCC-CHhHHHHHhcccccCC
Q 008207 385 --GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ-------CEPPR-DVEAYIHRSGRTGRAG 454 (574)
Q Consensus 385 --~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~-------~d~p~-s~~~yiqr~GR~gR~g 454 (574)
++.++||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||. |+.|. +..+|.||+|||||.|
T Consensus 295 ~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~ 374 (720)
T PRK00254 295 RGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPK 374 (720)
T ss_pred hhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCC
Confidence 4778999999999999999999999999999999999999999999994 55544 5679999999999975
Q ss_pred --CcceEEEEECCC
Q 008207 455 --NTGVAVMLYDPR 466 (574)
Q Consensus 455 --~~G~~i~l~~~~ 466 (574)
..|.++++....
T Consensus 375 ~d~~G~~ii~~~~~ 388 (720)
T PRK00254 375 YDEVGEAIIVATTE 388 (720)
T ss_pred cCCCceEEEEecCc
Confidence 579999998765
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=5.9e-44 Score=396.55 Aligned_cols=319 Identities=24% Similarity=0.289 Sum_probs=248.0
Q ss_pred cCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcC------CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCC
Q 008207 114 FRISVPLREKLKS-KGIESLFPIQAMTFDMVLDG------SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (574)
Q Consensus 114 ~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~il~~------~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (574)
|..+..++..+.+ .+| .|||+|.++|+.++++ .|++++|+||||||.+|++|++..+..+
T Consensus 434 ~~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g------------ 500 (926)
T TIGR00580 434 FPPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG------------ 500 (926)
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC------------
Confidence 3455566666655 578 5999999999999875 7999999999999999999999888653
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHH---Hhc-CCCcEEEEChHHHHHhHhcCCccCCCc
Q 008207 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF---KLK-KGIDVVIGTPGRIKDHIERGNIDLSSL 262 (574)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~-~~~~IlV~Tp~~l~~~l~~~~~~l~~~ 262 (574)
.+++|++||++||.|+++.|..+....++++..++|+.+...+.. .+. ..++|+|+||..+ +..+.+.++
T Consensus 501 -~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L 574 (926)
T TIGR00580 501 -KQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDL 574 (926)
T ss_pred -CeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccC
Confidence 369999999999999999999888878899999998877544332 333 3599999999433 345678999
Q ss_pred eEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEE
Q 008207 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (574)
Q Consensus 263 ~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 342 (574)
++|||||+|++. ......+..++. .+|+++||||+.+....+....+ .+...+...... ...+...+.
T Consensus 575 ~llVIDEahrfg-----v~~~~~L~~~~~--~~~vL~~SATpiprtl~~~l~g~-~d~s~I~~~p~~----R~~V~t~v~ 642 (926)
T TIGR00580 575 GLLIIDEEQRFG-----VKQKEKLKELRT--SVDVLTLSATPIPRTLHMSMSGI-RDLSIIATPPED----RLPVRTFVM 642 (926)
T ss_pred CEEEeecccccc-----hhHHHHHHhcCC--CCCEEEEecCCCHHHHHHHHhcC-CCcEEEecCCCC----ccceEEEEE
Confidence 999999999852 233445555554 68999999998776555544333 344444432211 223444444
Q ss_pred eCCchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC------CCccccccCCHHHHHHHHHHHhCCCccEEEEe
Q 008207 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416 (574)
Q Consensus 343 ~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT 416 (574)
..... .+...++.....+++++||||+++.++.++..|. .+..+||+|++.+|..++++|++|+++|||||
T Consensus 643 ~~~~~---~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT 719 (926)
T TIGR00580 643 EYDPE---LVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCT 719 (926)
T ss_pred ecCHH---HHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEC
Confidence 33221 1222233334467899999999999999888776 46789999999999999999999999999999
Q ss_pred ccccccCCCCCCcEEEEeCCCC-CHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 417 NVAARGLDINDVQLIIQCEPPR-DVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 417 d~~~~Gldi~~v~~VI~~d~p~-s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
+++++|||+|++++||+++.|. +..+|.||+||+||.|+.|.||+|+.+.
T Consensus 720 ~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 720 TIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred ChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 9999999999999999999976 6789999999999999999999999754
No 47
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.1e-43 Score=392.99 Aligned_cols=330 Identities=20% Similarity=0.286 Sum_probs=250.9
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCe
Q 008207 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPS 189 (574)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~ 189 (574)
.|++++|++.+++.+...+|. |+|+|.++++.+.+|++++++||||||||+++.++++..+..+ .+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~-------------~k 67 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG-------------LK 67 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhC-------------Cc
Confidence 467899999999999999996 9999999999999999999999999999999999999887643 24
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecC
Q 008207 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269 (574)
Q Consensus 190 ~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDE 269 (574)
++|++|+++||.|+++++.++. ..++++...+|+...... ....++|+|+||+++..++.+....+.++++||+||
T Consensus 68 ~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDE 143 (674)
T PRK01172 68 SIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADE 143 (674)
T ss_pred EEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEec
Confidence 8999999999999999998764 467888888888754322 224589999999999888877666789999999999
Q ss_pred chhhhcCCcHHHHHHHHHhccC-ccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccce-----eEEEEe
Q 008207 270 ADEMLRMGFVEDVELILGKVED-ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV-----RHIVLP 343 (574)
Q Consensus 270 ah~~l~~~~~~~~~~il~~l~~-~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i-----~~~~~~ 343 (574)
||++.+.++...++.++..+.. .++.|+++||||+++. ..+.. |+... .+..... ..+..+ .+.+..
T Consensus 144 aH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~-wl~~~--~~~~~~r---~vpl~~~i~~~~~~~~~ 216 (674)
T PRK01172 144 IHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQ-WLNAS--LIKSNFR---PVPLKLGILYRKRLILD 216 (674)
T ss_pred chhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHH-HhCCC--ccCCCCC---CCCeEEEEEecCeeeec
Confidence 9999888888888877765432 1268999999999863 34443 44211 1110000 000000 011111
Q ss_pred CCchhhhhhhhHHHH-hhcCCCeEEEEecChHHHHHHHHhCC-----------------------------CCccccccC
Q 008207 344 CSSSARSQVIPDIIR-CYSSGGRTIIFTETKESASQLADLLP-----------------------------GARALHGDI 393 (574)
Q Consensus 344 ~~~~~~~~~l~~ll~-~~~~~~~~lVF~~t~~~~~~l~~~l~-----------------------------~~~~lh~~~ 393 (574)
........ +..++. ....++++||||++++.++.++..|. ++.++||+|
T Consensus 217 ~~~~~~~~-~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl 295 (674)
T PRK01172 217 GYERSQVD-INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGL 295 (674)
T ss_pred cccccccc-HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCC
Confidence 11111111 223333 24567899999999999988886652 356799999
Q ss_pred CHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEeC---------CCCCHhHHHHHhcccccCCC--cceEEEE
Q 008207 394 QQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCE---------PPRDVEAYIHRSGRTGRAGN--TGVAVML 462 (574)
Q Consensus 394 ~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d---------~p~s~~~yiqr~GR~gR~g~--~G~~i~l 462 (574)
++.+|..+++.|++|.++|||||+++++|+|+|+..+|| +| .|.+..+|.||+|||||.|. .|.++++
T Consensus 296 ~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~ 374 (674)
T PRK01172 296 SNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIY 374 (674)
T ss_pred CHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEE
Confidence 999999999999999999999999999999999865544 44 35688999999999999985 6778877
Q ss_pred ECCC
Q 008207 463 YDPR 466 (574)
Q Consensus 463 ~~~~ 466 (574)
+...
T Consensus 375 ~~~~ 378 (674)
T PRK01172 375 AASP 378 (674)
T ss_pred ecCc
Confidence 6544
No 48
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.7e-43 Score=380.30 Aligned_cols=314 Identities=18% Similarity=0.232 Sum_probs=233.6
Q ss_pred HHHHHHHHHHhcCCcEEEEccCCChhHHH---------hHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHH
Q 008207 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLA---------FVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (574)
Q Consensus 134 ~~Q~~~i~~il~~~dvi~~a~TGsGKTla---------~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (574)
.+|.++++.+++|+|+|++|+||||||.+ |++|.+..+..-.. .....+++|++|||+||.|+.
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~-------~~~~~~ilvt~PrreLa~qi~ 239 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDP-------NFIERPIVLSLPRVALVRLHS 239 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhccc-------ccCCcEEEEECcHHHHHHHHH
Confidence 47999999999999999999999999997 44444444421100 023457999999999999999
Q ss_pred HHHHHhhCC---CCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHH
Q 008207 205 EDFDVYGGA---VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVED 281 (574)
Q Consensus 205 ~~~~~~~~~---~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~ 281 (574)
..+.....+ .+..+.+.+||.+. .+........+|+|+|++... ..++++++|||||||++..++ +.
T Consensus 240 ~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~l-------~~L~~v~~VVIDEaHEr~~~~--Dl 309 (675)
T PHA02653 240 ITLLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLTL-------NKLFDYGTVIIDEVHEHDQIG--DI 309 (675)
T ss_pred HHHHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcccc-------cccccCCEEEccccccCccch--hH
Confidence 998765433 46778889999873 222333346899999986321 258899999999999997765 44
Q ss_pred HHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCc----------hhhhh
Q 008207 282 VELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS----------SARSQ 351 (574)
Q Consensus 282 ~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~----------~~~~~ 351 (574)
+..++..+... .+|+++||||++..+..+ ..|+ .++..+.+.+ .+...+++.++.... ..+..
T Consensus 310 lL~llk~~~~~-~rq~ILmSATl~~dv~~l-~~~~-~~p~~I~I~g----rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~ 382 (675)
T PHA02653 310 IIAVARKHIDK-IRSLFLMTATLEDDRDRI-KEFF-PNPAFVHIPG----GTLFPISEVYVKNKYNPKNKRAYIEEEKKN 382 (675)
T ss_pred HHHHHHHhhhh-cCEEEEEccCCcHhHHHH-HHHh-cCCcEEEeCC----CcCCCeEEEEeecCcccccchhhhHHHHHH
Confidence 55555544321 359999999999888776 5677 4677776643 233456676654321 12222
Q ss_pred hhhHHHHhh-cCCCeEEEEecChHHHHHHHHhCC------CCccccccCCHHHHHHHHHHH-hCCCccEEEEeccccccC
Q 008207 352 VIPDIIRCY-SSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGF-RSGKFMTLVATNVAARGL 423 (574)
Q Consensus 352 ~l~~ll~~~-~~~~~~lVF~~t~~~~~~l~~~l~------~~~~lh~~~~~~~r~~~~~~F-~~g~~~vLvaTd~~~~Gl 423 (574)
.+..+.... ..++.+|||++++.+++.++..|. .+..+||++++. .+.+++| ++|+.+||||||+|+|||
T Consensus 383 ~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGI 460 (675)
T PHA02653 383 IVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSV 460 (675)
T ss_pred HHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccc
Confidence 333333222 245789999999999999998885 466899999975 5667777 689999999999999999
Q ss_pred CCCCCcEEEEeC---CCC---------CHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHH
Q 008207 424 DINDVQLIIQCE---PPR---------DVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIE 474 (574)
Q Consensus 424 di~~v~~VI~~d---~p~---------s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~ 474 (574)
|||+|++||++| .|. |.++|+||+|||||. ++|.|+.|+++. ...+.++.
T Consensus 461 DIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri~ 523 (675)
T PHA02653 461 TIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRID 523 (675)
T ss_pred cccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHHh
Confidence 999999999999 665 888999999999999 799999999987 33355555
No 49
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1e-42 Score=396.12 Aligned_cols=339 Identities=24% Similarity=0.339 Sum_probs=243.3
Q ss_pred EEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhh------------CCCCceE
Q 008207 151 GRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG------------GAVGLTS 218 (574)
Q Consensus 151 ~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~------------~~~~~~~ 218 (574)
|+||||||||++|.+|+++.+...............++++|||+|+|+|+.|+.+.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999999987543111000111345789999999999999999886411 1357899
Q ss_pred EEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcC-CccCCCceEEEecCchhhhcCCcHHH----HHHHHHhccCcc
Q 008207 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG-NIDLSSLKFRVLDEADEMLRMGFVED----VELILGKVEDAN 293 (574)
Q Consensus 219 ~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~-~~~l~~~~~lVlDEah~~l~~~~~~~----~~~il~~l~~~~ 293 (574)
...+|+++...+...+.+.+||+|+||++|..++.+. ...++++++|||||+|.|++..+..+ +..+...++.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~-- 158 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHT-- 158 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCC--
Confidence 9999999998877777888999999999999887654 34689999999999999987644444 4444444443
Q ss_pred CceEEEEeccCchhHHHHHHHhcccC-CeEEEEecCcccccccceeEEEEeCCchhh---------------------hh
Q 008207 294 KVQTLLFSATLPSWVKHISTKFLKSD-KKTIDLVGNEKMKASTNVRHIVLPCSSSAR---------------------SQ 351 (574)
Q Consensus 294 ~~q~ll~SAT~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~---------------------~~ 351 (574)
+.|+|+||||+++ ...+. .|+... +..+ .... ......+. ++++...... ..
T Consensus 159 ~~QrIgLSATI~n-~eevA-~~L~g~~pv~I--v~~~-~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~ 232 (1490)
T PRK09751 159 SAQRIGLSATVRS-ASDVA-AFLGGDRPVTV--VNPP-AMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPY 232 (1490)
T ss_pred CCeEEEEEeeCCC-HHHHH-HHhcCCCCEEE--ECCC-CCcccceE-EEEecCchhhccccccccccccchhhhhhhhHH
Confidence 6899999999987 45555 455322 3222 2111 11112232 2222211100 01
Q ss_pred hhhHHHHhhcCCCeEEEEecChHHHHHHHHhCCC-------------------------------------CccccccCC
Q 008207 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLPG-------------------------------------ARALHGDIQ 394 (574)
Q Consensus 352 ~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-------------------------------------~~~lh~~~~ 394 (574)
....++.....+.++||||||+..|+.++..|+. +..+||+|+
T Consensus 233 v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLS 312 (1490)
T PRK09751 233 IETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVS 312 (1490)
T ss_pred HHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCC
Confidence 1223444344568899999999999999877641 357999999
Q ss_pred HHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccC-CCcceEEEEECCCchHH---
Q 008207 395 QSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA-GNTGVAVMLYDPRKSSV--- 470 (574)
Q Consensus 395 ~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~-g~~G~~i~l~~~~~~~~--- 470 (574)
+++|..+++.|++|++++||||+.+++||||++|++||||+.|.+..+|+||+|||||. |..+.++++.......+
T Consensus 313 keeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~r~dlle~~ 392 (1490)
T PRK09751 313 KEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLVDSA 392 (1490)
T ss_pred HHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCcHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999996 22344554333322222
Q ss_pred HHHHHHhCCcceecCCCCHH-HHHHHHH
Q 008207 471 SKIERESGVKFEHISAPQPA-DIAKAAG 497 (574)
Q Consensus 471 ~~i~~~~~~~~~~~~~~~~~-~i~~~~~ 497 (574)
.-++....-.++.+..|... ++.....
T Consensus 393 ~~ve~~l~g~iE~~~~p~nplDVLaqqi 420 (1490)
T PRK09751 393 VIVECMFAGRLENLTPPHNPLDVLAQQT 420 (1490)
T ss_pred HHHHHHhcCCCCccCCCCChHHHHHHHH
Confidence 24777888888887777544 5655443
No 50
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=6.2e-43 Score=396.46 Aligned_cols=313 Identities=22% Similarity=0.227 Sum_probs=244.3
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHhcC------CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEE
Q 008207 119 PLREKLKSKGIESLFPIQAMTFDMVLDG------SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLV 192 (574)
Q Consensus 119 ~l~~~l~~~g~~~~~~~Q~~~i~~il~~------~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Li 192 (574)
+..+.....+| .||++|.++|+.++.+ .|++++|+||+|||.+|+.+++..+.. +.+++|
T Consensus 589 ~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~-------------g~qvlv 654 (1147)
T PRK10689 589 QYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN-------------HKQVAV 654 (1147)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc-------------CCeEEE
Confidence 34444566788 7999999999999987 899999999999999999888876643 346999
Q ss_pred EeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhc----CCCcEEEEChHHHHHhHhcCCccCCCceEEEec
Q 008207 193 LLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK----KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268 (574)
Q Consensus 193 l~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlD 268 (574)
|+||++||.|+++.|..++...++++.+++|+.+...+...+. ..++|+|+||+.+. ..+.+.++++||||
T Consensus 655 LvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVID 729 (1147)
T PRK10689 655 LVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVD 729 (1147)
T ss_pred EeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEe
Confidence 9999999999999999877767889999999888776654432 46899999997542 34567899999999
Q ss_pred CchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchh
Q 008207 269 EADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348 (574)
Q Consensus 269 Eah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~ 348 (574)
|+|++ |+. ....+..++. ++|+++||||+++....+....+ .++..+...... ...+.+++......
T Consensus 730 Eahrf---G~~--~~e~lk~l~~--~~qvLl~SATpiprtl~l~~~gl-~d~~~I~~~p~~----r~~v~~~~~~~~~~- 796 (1147)
T PRK10689 730 EEHRF---GVR--HKERIKAMRA--DVDILTLTATPIPRTLNMAMSGM-RDLSIIATPPAR----RLAVKTFVREYDSL- 796 (1147)
T ss_pred chhhc---chh--HHHHHHhcCC--CCcEEEEcCCCCHHHHHHHHhhC-CCcEEEecCCCC----CCCceEEEEecCcH-
Confidence 99986 432 2344556655 78999999998887777776666 455555543221 22344444433221
Q ss_pred hhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC------CCccccccCCHHHHHHHHHHHhCCCccEEEEecccccc
Q 008207 349 RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (574)
Q Consensus 349 ~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~G 422 (574)
.....++.....+++++||||+++.++.++..|. .+.++||+|++.+|.+++.+|++|+++|||||++++||
T Consensus 797 --~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierG 874 (1147)
T PRK10689 797 --VVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETG 874 (1147)
T ss_pred --HHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcc
Confidence 1223334444457899999999999888877764 57789999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEeCCC-CCHhHHHHHhcccccCCCcceEEEEECC
Q 008207 423 LDINDVQLIIQCEPP-RDVEAYIHRSGRTGRAGNTGVAVMLYDP 465 (574)
Q Consensus 423 ldi~~v~~VI~~d~p-~s~~~yiqr~GR~gR~g~~G~~i~l~~~ 465 (574)
||+|++++||..+.. .+..+|+||+||+||.|+.|.||+++..
T Consensus 875 IDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 875 IDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred cccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 999999999954432 2456799999999999999999999854
No 51
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=3.2e-42 Score=369.82 Aligned_cols=357 Identities=22% Similarity=0.333 Sum_probs=277.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeC
Q 008207 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195 (574)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~P 195 (574)
|++.+.+.+... |..|||.|.++||.+.+|+|+++.||||||||+|+.+|++..+..... .....+..+|||+|
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~-----~~~~~~i~~lYIsP 81 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGK-----GKLEDGIYALYISP 81 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccC-----CCCCCceEEEEeCc
Confidence 689999999988 999999999999999999999999999999999999999999987731 01245678999999
Q ss_pred cHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCc--cCCCceEEEecCchhh
Q 008207 196 TRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI--DLSSLKFRVLDEADEM 273 (574)
Q Consensus 196 treLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~--~l~~~~~lVlDEah~~ 273 (574)
.|+|.+.+...+..++...|+.+..-+|+++.....+...+.|||+|+||+.|.-++....+ .|.++++|||||.|.+
T Consensus 82 LkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel 161 (814)
T COG1201 82 LKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHAL 161 (814)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhh
Confidence 99999999999999999999999999999999888888999999999999999877765332 4899999999999999
Q ss_pred hcCCcHHHHHHHHHhccCcc-CceEEEEeccCchhHHHHHHHhcccCC---eEEEEecCcccccccceeEEEEeC-----
Q 008207 274 LRMGFVEDVELILGKVEDAN-KVQTLLFSATLPSWVKHISTKFLKSDK---KTIDLVGNEKMKASTNVRHIVLPC----- 344 (574)
Q Consensus 274 l~~~~~~~~~~il~~l~~~~-~~q~ll~SAT~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~i~~~~~~~----- 344 (574)
.+...+.++..-+..+.... ..|.|++|||..+. ...++ |+-... .++.+... ...+...+..
T Consensus 162 ~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~-~~var-fL~g~~~~~~Iv~~~~~------k~~~i~v~~p~~~~~ 233 (814)
T COG1201 162 AESKRGVQLALSLERLRELAGDFQRIGLSATVGPP-EEVAK-FLVGFGDPCEIVDVSAA------KKLEIKVISPVEDLI 233 (814)
T ss_pred hccccchhhhhhHHHHHhhCcccEEEeehhccCCH-HHHHH-HhcCCCCceEEEEcccC------CcceEEEEecCCccc
Confidence 87666666665555554322 68999999999853 33333 442332 33333221 1122221111
Q ss_pred ----CchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC-----CCccccccCCHHHHHHHHHHHhCCCccEEEE
Q 008207 345 ----SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSGKFMTLVA 415 (574)
Q Consensus 345 ----~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~-----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLva 415 (574)
........+..+++ ....+|||+||+..++.++..|. .+..+||.++...|..+.++|++|+.+++||
T Consensus 234 ~~~~~~~~~~~~i~~~v~---~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~ 310 (814)
T COG1201 234 YDEELWAALYERIAELVK---KHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVA 310 (814)
T ss_pred cccchhHHHHHHHHHHHh---hcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEE
Confidence 11223334444444 44689999999999999998886 5678999999999999999999999999999
Q ss_pred eccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccC-CCcceEEEEECCCchHHH---HHHHHhCCcceecCCCCH
Q 008207 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA-GNTGVAVMLYDPRKSSVS---KIERESGVKFEHISAPQP 489 (574)
Q Consensus 416 Td~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~-g~~G~~i~l~~~~~~~~~---~i~~~~~~~~~~~~~~~~ 489 (574)
|..++-|||+.+|+.||+|+.|.+...++||+||+|+. |..-..+.+.......+. -......-.++.+..|..
T Consensus 311 TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~ 388 (814)
T COG1201 311 TSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKN 388 (814)
T ss_pred ccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCCc
Confidence 99999999999999999999999999999999999964 444455555544322322 233444455665555543
No 52
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.5e-42 Score=381.58 Aligned_cols=299 Identities=21% Similarity=0.299 Sum_probs=233.6
Q ss_pred HHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHH-HhhC
Q 008207 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD-VYGG 212 (574)
Q Consensus 134 ~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~-~~~~ 212 (574)
.+-.+.+..+.+++++|++|+||||||++|.+++++.... +.+++|+.|||++|.|+++.+. .++.
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~-------------~~~ilvlqPrR~aA~qiA~rva~~~~~ 71 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI-------------GGKIIMLEPRRLAARSAAQRLASQLGE 71 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc-------------CCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 3445667778889999999999999999999999987521 2369999999999999999885 5555
Q ss_pred CCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchh-hhcCCcHHH-HHHHHHhcc
Q 008207 213 AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADE-MLRMGFVED-VELILGKVE 290 (574)
Q Consensus 213 ~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~-~l~~~~~~~-~~~il~~l~ 290 (574)
..+..++..+++.+ .....++|+|+|||+|++++.++ ..++++++|||||+|+ +++.++.-. +..+...++
T Consensus 72 ~~g~~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr 144 (819)
T TIGR01970 72 AVGQTVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLR 144 (819)
T ss_pred CcCcEEEEEEcccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcC
Confidence 56666766655533 23456899999999999999874 4799999999999995 777665433 344555565
Q ss_pred CccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhhh-----hhhhHHHHhhcCCCe
Q 008207 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS-----QVIPDIIRCYSSGGR 365 (574)
Q Consensus 291 ~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~-----~~l~~ll~~~~~~~~ 365 (574)
. +.|+++||||++... ...|+ .+...+...+.. ..+.+.|..+....+. ..+..++.. ..+.
T Consensus 145 ~--dlqlIlmSATl~~~~---l~~~l-~~~~vI~~~gr~-----~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~ 211 (819)
T TIGR01970 145 E--DLKILAMSATLDGER---LSSLL-PDAPVVESEGRS-----FPVEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGS 211 (819)
T ss_pred C--CceEEEEeCCCCHHH---HHHHc-CCCcEEEecCcc-----eeeeeEEeecchhhhHHHHHHHHHHHHHHh--cCCc
Confidence 4 789999999999753 35666 345556544322 2466667665443332 223333332 3588
Q ss_pred EEEEecChHHHHHHHHhCC-------CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEeCCCC
Q 008207 366 TIIFTETKESASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR 438 (574)
Q Consensus 366 ~lVF~~t~~~~~~l~~~l~-------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~ 438 (574)
+|||++++.+++.++..|. .+..+||+|++.+|.++++.|++|..+||||||++++|||||+|++|||+++|.
T Consensus 212 iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r 291 (819)
T TIGR01970 212 ILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLAR 291 (819)
T ss_pred EEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCccc
Confidence 9999999999999988875 256799999999999999999999999999999999999999999999999885
Q ss_pred ------------------CHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 439 ------------------DVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 439 ------------------s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
|..+|+||+|||||. .+|.||.|+++.
T Consensus 292 ~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~ 336 (819)
T TIGR01970 292 VARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEE 336 (819)
T ss_pred ccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHH
Confidence 345699999999999 799999999865
No 53
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=2.6e-42 Score=392.13 Aligned_cols=281 Identities=22% Similarity=0.329 Sum_probs=221.0
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHH
Q 008207 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (574)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (574)
.|+ .||++|..++|.++.|+|++++||||||||+ |++|++..+.. .++++|||+|||+||.|+++.
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~------------~g~~alIL~PTreLa~Qi~~~ 142 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK------------KGKKSYIIFPTRLLVEQVVEK 142 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh------------cCCeEEEEeccHHHHHHHHHH
Confidence 377 8999999999999999999999999999995 66666655532 235799999999999999999
Q ss_pred HHHhhCCCCceEEEEeCCcch-----HHHHHHhc-CCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhc-----
Q 008207 207 FDVYGGAVGLTSCCLYGGAPY-----HAQEFKLK-KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR----- 275 (574)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~-----~~~~~~l~-~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~----- 275 (574)
++.++...++.+..++|+.+. ..+...+. ..++|+|+||++|.+++. .+....+++||+||||+|++
T Consensus 143 l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~i 220 (1176)
T PRK09401 143 LEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNI 220 (1176)
T ss_pred HHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccch
Confidence 999998888888888877653 22223333 469999999999999886 45566799999999999996
Q ss_pred ------CCcH-HHHHHHHHhccCc----------------------cCceEEEEeccCchh-HHHHHHHhcccCCeEEEE
Q 008207 276 ------MGFV-EDVELILGKVEDA----------------------NKVQTLLFSATLPSW-VKHISTKFLKSDKKTIDL 325 (574)
Q Consensus 276 ------~~~~-~~~~~il~~l~~~----------------------~~~q~ll~SAT~~~~-~~~~~~~~~~~~~~~i~~ 325 (574)
+||. +++..++..++.. ...|+++||||+++. +.. .++ .....+.+
T Consensus 221 d~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~-~~ll~~~v 296 (1176)
T PRK09401 221 DKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLF-RELLGFEV 296 (1176)
T ss_pred hhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHh-hccceEEe
Confidence 7885 6788888777641 157999999999864 332 111 12222333
Q ss_pred ecCcccccccceeEEEEeCCchhhhhhhhHHHHhhcCCCeEEEEecChHH---HHHHHHhCC----CCccccccCCHHHH
Q 008207 326 VGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKES---ASQLADLLP----GARALHGDIQQSQR 398 (574)
Q Consensus 326 ~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~---~~~l~~~l~----~~~~lh~~~~~~~r 398 (574)
... .....++.+.++.+. .+...+..++... +.++||||+++.. ++.+++.|. .+..+||+|
T Consensus 297 ~~~--~~~~rnI~~~yi~~~--~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l----- 365 (1176)
T PRK09401 297 GSP--VFYLRNIVDSYIVDE--DSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF----- 365 (1176)
T ss_pred cCc--ccccCCceEEEEEcc--cHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----
Confidence 222 245567888888765 5566777777655 3589999999777 999999987 567899999
Q ss_pred HHHHHHHhCCCccEEEE----eccccccCCCCC-CcEEEEeCCCC
Q 008207 399 EVTLAGFRSGKFMTLVA----TNVAARGLDIND-VQLIIQCEPPR 438 (574)
Q Consensus 399 ~~~~~~F~~g~~~vLva----Td~~~~Gldi~~-v~~VI~~d~p~ 438 (574)
.+.+++|++|+++|||| ||+++||||+|+ |++|||||+|.
T Consensus 366 ~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 366 ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 23459999999999999 699999999999 89999999996
No 54
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=8.8e-42 Score=374.86 Aligned_cols=314 Identities=23% Similarity=0.352 Sum_probs=235.3
Q ss_pred HHHHHHH-HHCCCCCCcHHHHHHHHHHhcC------CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeE
Q 008207 118 VPLREKL-KSKGIESLFPIQAMTFDMVLDG------SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSV 190 (574)
Q Consensus 118 ~~l~~~l-~~~g~~~~~~~Q~~~i~~il~~------~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~ 190 (574)
..+.+.+ ...+| .||++|.++++.+..+ .+++++|+||||||++|++|++..+..+ .++
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g-------------~q~ 313 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAG-------------YQA 313 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcC-------------CeE
Confidence 4444444 55677 7999999999999876 4899999999999999999999888543 369
Q ss_pred EEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHH---HHhc-CCCcEEEEChHHHHHhHhcCCccCCCceEEE
Q 008207 191 LVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE---FKLK-KGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (574)
Q Consensus 191 Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~-~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lV 266 (574)
+|++||++||.|+++.++.++...++++..++|+.+..... ..+. ..++|+|+||+++.+ .+.+.++++||
T Consensus 314 lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvV 388 (681)
T PRK10917 314 ALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVI 388 (681)
T ss_pred EEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEE
Confidence 99999999999999999999988899999999999864433 3333 359999999998854 34688999999
Q ss_pred ecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCc
Q 008207 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (574)
Q Consensus 267 lDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 346 (574)
+||+|++.. . ....+..... .+++++||||+.+....+.. +...+...++... .....+...+....
T Consensus 389 IDE~Hrfg~----~-qr~~l~~~~~--~~~iL~~SATp~prtl~~~~-~g~~~~s~i~~~p----~~r~~i~~~~~~~~- 455 (681)
T PRK10917 389 IDEQHRFGV----E-QRLALREKGE--NPHVLVMTATPIPRTLAMTA-YGDLDVSVIDELP----PGRKPITTVVIPDS- 455 (681)
T ss_pred EechhhhhH----H-HHHHHHhcCC--CCCEEEEeCCCCHHHHHHHH-cCCCceEEEecCC----CCCCCcEEEEeCcc-
Confidence 999998632 1 2222333332 57899999998665433332 2111222222111 11223444444332
Q ss_pred hhhhhhhhHHHHhhcCCCeEEEEecChHH--------HH----HHHHhCC--CCccccccCCHHHHHHHHHHHhCCCccE
Q 008207 347 SARSQVIPDIIRCYSSGGRTIIFTETKES--------AS----QLADLLP--GARALHGDIQQSQREVTLAGFRSGKFMT 412 (574)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~lVF~~t~~~--------~~----~l~~~l~--~~~~lh~~~~~~~r~~~~~~F~~g~~~v 412 (574)
....++..+......+.+++|||+..++ +. .|...+. .+..+||+|++.+|..++++|++|+.+|
T Consensus 456 -~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~I 534 (681)
T PRK10917 456 -RRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDI 534 (681)
T ss_pred -cHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCE
Confidence 2233334444444577899999996532 33 3344443 6788999999999999999999999999
Q ss_pred EEEeccccccCCCCCCcEEEEeCCCC-CHhHHHHHhcccccCCCcceEEEEEC
Q 008207 413 LVATNVAARGLDINDVQLIIQCEPPR-DVEAYIHRSGRTGRAGNTGVAVMLYD 464 (574)
Q Consensus 413 LvaTd~~~~Gldi~~v~~VI~~d~p~-s~~~yiqr~GR~gR~g~~G~~i~l~~ 464 (574)
||||+++++|||+|++++||+|+.|. ....|.||+||+||.|..|.|+++++
T Consensus 535 LVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 535 LVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred EEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 99999999999999999999999997 46788889999999999999999995
No 55
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=8.4e-42 Score=372.78 Aligned_cols=316 Identities=21% Similarity=0.309 Sum_probs=235.1
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHhcC------CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEE
Q 008207 119 PLREKLKSKGIESLFPIQAMTFDMVLDG------SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLV 192 (574)
Q Consensus 119 ~l~~~l~~~g~~~~~~~Q~~~i~~il~~------~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Li 192 (574)
.+.+.+...+| +||++|.++|+.++.+ .+.+++|+||||||++|++|++..+..+ .+++|
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g-------------~qvli 289 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAG-------------YQVAL 289 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcC-------------CcEEE
Confidence 34456677888 7999999999999875 2589999999999999999999888643 35999
Q ss_pred EeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHH---HHh-cCCCcEEEEChHHHHHhHhcCCccCCCceEEEec
Q 008207 193 LLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE---FKL-KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268 (574)
Q Consensus 193 l~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l-~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlD 268 (574)
++||++||.|+++.+..++...++++..++|+.+..... ..+ ...++|+|+||+++.+ .+.+.++++||+|
T Consensus 290 laPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVID 364 (630)
T TIGR00643 290 MAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIID 364 (630)
T ss_pred ECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEe
Confidence 999999999999999999888899999999998765432 233 3458999999998854 3567899999999
Q ss_pred CchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchh
Q 008207 269 EADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348 (574)
Q Consensus 269 Eah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~ 348 (574)
|+|++.. .+...+.........+++++||||+.+....+.. +.......+.... .....+...+... ..
T Consensus 365 EaH~fg~----~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~-~~~l~~~~i~~~p----~~r~~i~~~~~~~--~~ 433 (630)
T TIGR00643 365 EQHRFGV----EQRKKLREKGQGGFTPHVLVMSATPIPRTLALTV-YGDLDTSIIDELP----PGRKPITTVLIKH--DE 433 (630)
T ss_pred chhhccH----HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHh-cCCcceeeeccCC----CCCCceEEEEeCc--ch
Confidence 9998632 2223333333311246899999997654333221 1111111121111 1112333333322 22
Q ss_pred hhhhhhHHHHhhcCCCeEEEEecChH--------HHHHHHHhCC------CCccccccCCHHHHHHHHHHHhCCCccEEE
Q 008207 349 RSQVIPDIIRCYSSGGRTIIFTETKE--------SASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLV 414 (574)
Q Consensus 349 ~~~~l~~ll~~~~~~~~~lVF~~t~~--------~~~~l~~~l~------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLv 414 (574)
+..++..+......+.+++|||+..+ .++.++..|. .+..+||+|++.+|..+++.|++|+.+|||
T Consensus 434 ~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILV 513 (630)
T TIGR00643 434 KDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILV 513 (630)
T ss_pred HHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 33444444444456789999998763 3444444433 578999999999999999999999999999
Q ss_pred EeccccccCCCCCCcEEEEeCCCC-CHhHHHHHhcccccCCCcceEEEEEC
Q 008207 415 ATNVAARGLDINDVQLIIQCEPPR-DVEAYIHRSGRTGRAGNTGVAVMLYD 464 (574)
Q Consensus 415 aTd~~~~Gldi~~v~~VI~~d~p~-s~~~yiqr~GR~gR~g~~G~~i~l~~ 464 (574)
||+++++|||+|++++||+++.|. +...|.||+||+||.|+.|.|++++.
T Consensus 514 aT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 514 ATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred ECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 999999999999999999999997 57888899999999999999999993
No 56
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=1.8e-43 Score=340.67 Aligned_cols=277 Identities=32% Similarity=0.507 Sum_probs=226.1
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHHhhC---CCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCc
Q 008207 186 RAPSVLVLLPTRELAKQVHEDFDVYGG---AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSL 262 (574)
Q Consensus 186 ~~~~~Lil~PtreLa~Qv~~~~~~~~~---~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~ 262 (574)
..|.++|+-|.|||+.|+++.+++|-. ...++...+.||.....|...+.+++||+|+||||+.+.+..+.+.++.+
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~c 364 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHC 364 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeee
Confidence 568999999999999999997666543 34567778999999999999999999999999999999999999999999
Q ss_pred eEEEecCchhhhcCCcHHHHHHHHHhccCc----cCceEEEEeccCch-hHHHHHHHhcccCCeEEEEecCcccccccce
Q 008207 263 KFRVLDEADEMLRMGFVEDVELILGKVEDA----NKVQTLLFSATLPS-WVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337 (574)
Q Consensus 263 ~~lVlDEah~~l~~~~~~~~~~il~~l~~~----~~~q~ll~SAT~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 337 (574)
+++|+||||.++..++.+.+..+...+|.. ..+|.+++|||+.. ++..+..+.| ..|..+++.+.+ ..+..+
T Consensus 365 rFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervm-hfptwVdLkgeD--~vpetv 441 (725)
T KOG0349|consen 365 RFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVM-HFPTWVDLKGED--LVPETV 441 (725)
T ss_pred EEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhc-cCceeEeccccc--ccchhh
Confidence 999999999999999888888888877652 35799999999864 4556666666 567777776544 333344
Q ss_pred eEEEEeCCch----------------------------------hhhhh-----hhHHHHhhcCCCeEEEEecChHHHHH
Q 008207 338 RHIVLPCSSS----------------------------------ARSQV-----IPDIIRCYSSGGRTIIFTETKESASQ 378 (574)
Q Consensus 338 ~~~~~~~~~~----------------------------------~~~~~-----l~~ll~~~~~~~~~lVF~~t~~~~~~ 378 (574)
.+....+... ....+ -...++.+ .-.++||||.|+..++.
T Consensus 442 Hhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h-~mdkaiifcrtk~dcDn 520 (725)
T KOG0349|consen 442 HHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH-AMDKAIIFCRTKQDCDN 520 (725)
T ss_pred ccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh-ccCceEEEEeccccchH
Confidence 4433222110 00000 00111111 23589999999999999
Q ss_pred HHHhCC-------CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccc
Q 008207 379 LADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451 (574)
Q Consensus 379 l~~~l~-------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~g 451 (574)
|..++. .+.++||+..+.+|...++.|+.+.+++|||||+++|||||.++-++||..+|.+...|+||+||.|
T Consensus 521 Ler~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvg 600 (725)
T KOG0349|consen 521 LERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVG 600 (725)
T ss_pred HHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccc
Confidence 999997 5778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEEECCC
Q 008207 452 RAGNTGVAVMLYDPR 466 (574)
Q Consensus 452 R~g~~G~~i~l~~~~ 466 (574)
|+.+-|.+|+++...
T Consensus 601 raermglaislvat~ 615 (725)
T KOG0349|consen 601 RAERMGLAISLVATV 615 (725)
T ss_pred hhhhcceeEEEeecc
Confidence 999999999988754
No 57
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=3.7e-42 Score=379.50 Aligned_cols=299 Identities=21% Similarity=0.300 Sum_probs=232.7
Q ss_pred HHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHH-HhhC
Q 008207 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD-VYGG 212 (574)
Q Consensus 134 ~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~-~~~~ 212 (574)
.+-.+.+..+.++++++++|+||||||++|.+|+++.... ..+++|++|||++|.|+++.+. .++.
T Consensus 8 ~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-------------~~~ilvlqPrR~aA~qia~rva~~l~~ 74 (812)
T PRK11664 8 AVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-------------NGKIIMLEPRRLAARNVAQRLAEQLGE 74 (812)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-------------CCeEEEECChHHHHHHHHHHHHHHhCc
Confidence 3445667778889999999999999999999999975321 1369999999999999999985 5666
Q ss_pred CCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchh-hhcCCc-HHHHHHHHHhcc
Q 008207 213 AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADE-MLRMGF-VEDVELILGKVE 290 (574)
Q Consensus 213 ~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~-~l~~~~-~~~~~~il~~l~ 290 (574)
..+..++..+++.+.. ...++|+|+|||+|++++.++ ..++++++|||||+|+ .++..+ ...+..++..++
T Consensus 75 ~~g~~VGy~vr~~~~~------~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr 147 (812)
T PRK11664 75 KPGETVGYRMRAESKV------GPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLR 147 (812)
T ss_pred ccCceEEEEecCcccc------CCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCC
Confidence 6777888777765432 234789999999999998864 4799999999999997 344332 222344555565
Q ss_pred CccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhhhh-----hhhHHHHhhcCCCe
Q 008207 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ-----VIPDIIRCYSSGGR 365 (574)
Q Consensus 291 ~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~l~~ll~~~~~~~~ 365 (574)
. +.|+++||||++... ...|+ .+...+...+. ...+.+.|+......+.. .+..++.. ..+.
T Consensus 148 ~--~lqlilmSATl~~~~---l~~~~-~~~~~I~~~gr-----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~ 214 (812)
T PRK11664 148 D--DLKLLIMSATLDNDR---LQQLL-PDAPVIVSEGR-----SFPVERRYQPLPAHQRFDEAVARATAELLRQ--ESGS 214 (812)
T ss_pred c--cceEEEEecCCCHHH---HHHhc-CCCCEEEecCc-----cccceEEeccCchhhhHHHHHHHHHHHHHHh--CCCC
Confidence 4 789999999998742 34666 34555554432 124666776665444332 23333332 4689
Q ss_pred EEEEecChHHHHHHHHhCC-------CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEeCCCC
Q 008207 366 TIIFTETKESASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR 438 (574)
Q Consensus 366 ~lVF~~t~~~~~~l~~~l~-------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~ 438 (574)
+|||++++.+++.+++.|. .+..+||+|++.+|.+++..|++|+.+||||||++++||||++|++|||+++|.
T Consensus 215 iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r 294 (812)
T PRK11664 215 LLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLER 294 (812)
T ss_pred EEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcc
Confidence 9999999999999998886 256799999999999999999999999999999999999999999999988775
Q ss_pred ------------------CHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 439 ------------------DVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 439 ------------------s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
|.++|+||+|||||. .+|.||.|+++.
T Consensus 295 ~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~ 339 (812)
T PRK11664 295 VARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKE 339 (812)
T ss_pred cccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHH
Confidence 346899999999999 699999999965
No 58
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.8e-40 Score=351.08 Aligned_cols=321 Identities=21% Similarity=0.242 Sum_probs=244.2
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHH
Q 008207 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (574)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (574)
.|+ .|||+|..+++.++.|+ |+.+.||+|||++|++|++.....+ ++++|++||++||.|.+++
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G-------------~~v~VvTptreLA~qdae~ 163 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAG-------------LPVHVITVNDYLAERDAEL 163 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcC-------------CeEEEEcCcHHHHHHHHHH
Confidence 355 89999999999999999 9999999999999999999876543 3599999999999999999
Q ss_pred HHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHH-HHhHhcC-------------------------CccCC
Q 008207 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG-------------------------NIDLS 260 (574)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~~-------------------------~~~l~ 260 (574)
+..+....++++++++||.+. +.+....++||+|+|...| .|+|..+ ....+
T Consensus 164 ~~~l~~~lGlsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r 241 (656)
T PRK12898 164 MRPLYEALGLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLR 241 (656)
T ss_pred HHHHHhhcCCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccc
Confidence 999999999999999999864 4555567799999999988 4444221 11245
Q ss_pred CceEEEecCchhhh----------------c--CCcHHHHHHHHHhccCc------c-----------------------
Q 008207 261 SLKFRVLDEADEML----------------R--MGFVEDVELILGKVEDA------N----------------------- 293 (574)
Q Consensus 261 ~~~~lVlDEah~~l----------------~--~~~~~~~~~il~~l~~~------~----------------------- 293 (574)
.+.+.||||+|.++ . ..++.....+...+... .
T Consensus 242 ~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~ 321 (656)
T PRK12898 242 GLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLP 321 (656)
T ss_pred ccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcch
Confidence 68999999999865 0 01111222221111100 0
Q ss_pred --------------------------------------------------------------------------------
Q 008207 294 -------------------------------------------------------------------------------- 293 (574)
Q Consensus 294 -------------------------------------------------------------------------------- 293 (574)
T Consensus 322 ~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~ 401 (656)
T PRK12898 322 PAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITY 401 (656)
T ss_pred hhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehH
Confidence
Q ss_pred ------CceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhhhhhhhHHHHhh-cCCCeE
Q 008207 294 ------KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY-SSGGRT 366 (574)
Q Consensus 294 ------~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~-~~~~~~ 366 (574)
-.++.+||||.+.....+...|. .++..|. ... .......+.++.+....|...+..++... ..+.++
T Consensus 402 q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~-l~vv~IP--t~k--p~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pv 476 (656)
T PRK12898 402 QRFFRRYLRLAGMTGTAREVAGELWSVYG-LPVVRIP--TNR--PSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPV 476 (656)
T ss_pred HHHHHhhHHHhcccCcChHHHHHHHHHHC-CCeEEeC--CCC--CccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCE
Confidence 03677888888877777777665 3333332 211 11222344556667777888888887653 346789
Q ss_pred EEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCC---CCc-----EEEEe
Q 008207 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN---DVQ-----LIIQC 434 (574)
Q Consensus 367 lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~---~v~-----~VI~~ 434 (574)
||||+|+..++.++..|. .+..+||++. +|+..+..|+.+...|+||||+++||+||+ +|. |||+|
T Consensus 477 LIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~ 554 (656)
T PRK12898 477 LVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILT 554 (656)
T ss_pred EEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEc
Confidence 999999999999999997 5678999854 566666667767778999999999999999 676 99999
Q ss_pred CCCCCHhHHHHHhcccccCCCcceEEEEECCCchHHHH
Q 008207 435 EPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472 (574)
Q Consensus 435 d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~~~~~~~ 472 (574)
++|.+...|+||+|||||.|.+|.+++|++..+..+..
T Consensus 555 d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l~~~ 592 (656)
T PRK12898 555 ERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLLQS 592 (656)
T ss_pred CCCCCHHHHHHhcccccCCCCCeEEEEEechhHHHHHh
Confidence 99999999999999999999999999999987544443
No 59
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=6.6e-40 Score=373.17 Aligned_cols=288 Identities=23% Similarity=0.331 Sum_probs=218.3
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHH
Q 008207 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE 198 (574)
Q Consensus 119 ~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptre 198 (574)
++.+.+.+.....|+|+|..++|.++.|+|++++||||||||+ |++|++..+... ++++|||+|||+
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~------------g~~vLIL~PTre 132 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKK------------GKRCYIILPTTL 132 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhc------------CCeEEEEeCHHH
Confidence 3445555545558999999999999999999999999999997 777877665431 357999999999
Q ss_pred HHHHHHHHHHHhhCCCCceEE---EEeCCcchHHHHH---Hhc-CCCcEEEEChHHHHHhHhcCCccCCCceEEEecCch
Q 008207 199 LAKQVHEDFDVYGGAVGLTSC---CLYGGAPYHAQEF---KLK-KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271 (574)
Q Consensus 199 La~Qv~~~~~~~~~~~~~~~~---~~~gg~~~~~~~~---~l~-~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah 271 (574)
||.|+++.+..++...++.+. +++||.+...+.. .+. ++++|+|+||++|.+++.+- .. +++++|+||||
T Consensus 133 La~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l--~~-~~~~iVvDEaD 209 (1171)
T TIGR01054 133 LVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL--GP-KFDFIFVDDVD 209 (1171)
T ss_pred HHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh--cC-CCCEEEEeChH
Confidence 999999999999887666543 4678888765432 233 45999999999999987752 22 89999999999
Q ss_pred hhhc-----------CCcHHH-HHHHHH----------------------hccCccCce--EEEEecc-CchhHHHHHHH
Q 008207 272 EMLR-----------MGFVED-VELILG----------------------KVEDANKVQ--TLLFSAT-LPSWVKHISTK 314 (574)
Q Consensus 272 ~~l~-----------~~~~~~-~~~il~----------------------~l~~~~~~q--~ll~SAT-~~~~~~~~~~~ 314 (574)
+|++ +||.++ +..++. .++. .+| +++|||| +|..+.. .
T Consensus 210 ~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~q~~li~~SAT~~p~~~~~---~ 284 (1171)
T TIGR01054 210 ALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPG--KKRGCLIVSSATGRPRGKRA---K 284 (1171)
T ss_pred hhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhh--ccCcEEEEEeCCCCccccHH---H
Confidence 9998 788764 555543 2333 334 6679999 5665432 2
Q ss_pred hcccCCeEEEEecCcccccccceeEEEEeCCchhhhhhhhHHHHhhcCCCeEEEEecCh---HHHHHHHHhCC----CCc
Q 008207 315 FLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETK---ESASQLADLLP----GAR 387 (574)
Q Consensus 315 ~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~---~~~~~l~~~l~----~~~ 387 (574)
++ .....+.+.. ......++.+.++.+.. +...+..+++.. +.++||||+++ +.++.|+..|. .+.
T Consensus 285 l~-r~ll~~~v~~--~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~ 357 (1171)
T TIGR01054 285 LF-RELLGFEVGG--GSDTLRNVVDVYVEDED--LKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAV 357 (1171)
T ss_pred Hc-ccccceEecC--ccccccceEEEEEeccc--HHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEE
Confidence 22 2222333322 23455678888776544 234566677654 46799999999 99999999997 457
Q ss_pred cccccCCHHHHHHHHHHHhCCCccEEEE----eccccccCCCCC-CcEEEEeCCCC
Q 008207 388 ALHGDIQQSQREVTLAGFRSGKFMTLVA----TNVAARGLDIND-VQLIIQCEPPR 438 (574)
Q Consensus 388 ~lh~~~~~~~r~~~~~~F~~g~~~vLva----Td~~~~Gldi~~-v~~VI~~d~p~ 438 (574)
.+||++++ .+++.|++|+++|||| ||+++||||+|+ |++|||||+|.
T Consensus 358 ~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 358 AYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred EEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 89999973 6899999999999999 599999999999 89999999883
No 60
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.7e-40 Score=343.03 Aligned_cols=320 Identities=24% Similarity=0.316 Sum_probs=253.0
Q ss_pred HHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHH
Q 008207 122 EKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (574)
Q Consensus 122 ~~l~~-~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa 200 (574)
..|+. .||..++|-|.++|..+++|+|+++..|||.||++||.+|.+-. .+ -+|||+|..+|.
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~--~G--------------~TLVVSPLiSLM 70 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL--EG--------------LTLVVSPLISLM 70 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc--CC--------------CEEEECchHHHH
Confidence 34543 59999999999999999999999999999999999999999843 22 279999999999
Q ss_pred HHHHHHHHHhhCCCCceEEEEeCCcchHHHHHH---h-cCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcC
Q 008207 201 KQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK---L-KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM 276 (574)
Q Consensus 201 ~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l-~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~ 276 (574)
....+.++.. |+.+.++.+..+....... + ....++++-+|++|..--....+.--.+.++||||||++.+|
T Consensus 71 ~DQV~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqW 146 (590)
T COG0514 71 KDQVDQLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQW 146 (590)
T ss_pred HHHHHHHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhc
Confidence 9888888764 4777777777665444322 2 345899999999996543333333556889999999999999
Q ss_pred C--cHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhhhhhhh
Q 008207 277 G--FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354 (574)
Q Consensus 277 ~--~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~ 354 (574)
| |++++..+-......+++.++.+|||.++.+..-+...+......+.... ...+|+........ .......
T Consensus 147 GhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s----fdRpNi~~~v~~~~-~~~~q~~- 220 (590)
T COG0514 147 GHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGS----FDRPNLALKVVEKG-EPSDQLA- 220 (590)
T ss_pred CCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec----CCCchhhhhhhhcc-cHHHHHH-
Confidence 8 99999888776665557889999999999988877776644433222221 22233333322222 1122222
Q ss_pred HHHH-hhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCc
Q 008207 355 DIIR-CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQ 429 (574)
Q Consensus 355 ~ll~-~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~ 429 (574)
.+.. .....+..||||.|++.++.++..|. .+..+||+|+..+|..+.++|.+++.+|+|||.++++|||.|+|+
T Consensus 221 fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVR 300 (590)
T COG0514 221 FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVR 300 (590)
T ss_pred HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCce
Confidence 2221 23356779999999999999999997 678999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCCc
Q 008207 430 LIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK 467 (574)
Q Consensus 430 ~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~~ 467 (574)
+|||||+|.|.+.|+|-+|||||.|.+..|++||++.+
T Consensus 301 fViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D 338 (590)
T COG0514 301 FVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPED 338 (590)
T ss_pred EEEEecCCCCHHHHHHHHhhccCCCCcceEEEeecccc
Confidence 99999999999999999999999999999999999883
No 61
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=7.1e-40 Score=379.45 Aligned_cols=315 Identities=18% Similarity=0.249 Sum_probs=241.0
Q ss_pred HHHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcH
Q 008207 119 PLREKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197 (574)
Q Consensus 119 ~l~~~l~~-~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr 197 (574)
++.+.+++ .|| .|+++|.+++|.++.|+|++++||||||||++++++++.... .+.++|||+|||
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~-------------~g~~aLVl~PTr 132 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL-------------KGKKCYIILPTT 132 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh-------------cCCeEEEEECHH
Confidence 34455655 799 699999999999999999999999999999966655554322 134699999999
Q ss_pred HHHHHHHHHHHHhhCCC--CceEEEEeCCcchHHHHH---Hhc-CCCcEEEEChHHHHHhHhcCCccCCCceEEEecCch
Q 008207 198 ELAKQVHEDFDVYGGAV--GLTSCCLYGGAPYHAQEF---KLK-KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271 (574)
Q Consensus 198 eLa~Qv~~~~~~~~~~~--~~~~~~~~gg~~~~~~~~---~l~-~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah 271 (574)
+|+.|+++.++.++... ++.+..++|+.+...+.. .+. ..++|+|+||++|.+++... . ..+++++||||||
T Consensus 133 eLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD 210 (1638)
T PRK14701 133 LLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVD 210 (1638)
T ss_pred HHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECce
Confidence 99999999999988764 467788889988776543 333 35999999999999877642 2 2679999999999
Q ss_pred hhhc-----------CCcHHHHHH----HHH----------------------hccCccCce-EEEEeccCchh--HHHH
Q 008207 272 EMLR-----------MGFVEDVEL----ILG----------------------KVEDANKVQ-TLLFSATLPSW--VKHI 311 (574)
Q Consensus 272 ~~l~-----------~~~~~~~~~----il~----------------------~l~~~~~~q-~ll~SAT~~~~--~~~~ 311 (574)
+|++ +||.+++.. |+. .++. ..| ++++|||++.. +..+
T Consensus 211 ~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~ll~~SAT~~~r~~~~~l 288 (1638)
T PRK14701 211 AFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGN--KIGCLIVASATGKAKGDRVKL 288 (1638)
T ss_pred eccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCC--CccEEEEEecCCCchhHHHHH
Confidence 9986 589888864 332 1222 344 67799999963 3222
Q ss_pred HHHhcccCCeEEEEecCcccccccceeEEEEeCCchhhhhhhhHHHHhhcCCCeEEEEecChHH---HHHHHHhCC----
Q 008207 312 STKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKES---ASQLADLLP---- 384 (574)
Q Consensus 312 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~---~~~l~~~l~---- 384 (574)
+ ..+..+.+.. ......++.+.++.+....+ ..+..++... +..+||||++++. |+.++..|.
T Consensus 289 ----~-~~~l~f~v~~--~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi 358 (1638)
T PRK14701 289 ----Y-RELLGFEVGS--GRSALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGF 358 (1638)
T ss_pred ----h-hcCeEEEecC--CCCCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCC
Confidence 2 2333344332 23455678888887665544 4566777654 4689999999875 488888887
Q ss_pred CCccccccCCHHHHHHHHHHHhCCCccEEEEe----ccccccCCCCC-CcEEEEeCCCC---CHhHHHHHh---------
Q 008207 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVAT----NVAARGLDIND-VQLIIQCEPPR---DVEAYIHRS--------- 447 (574)
Q Consensus 385 ~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT----d~~~~Gldi~~-v~~VI~~d~p~---s~~~yiqr~--------- 447 (574)
.+..+||+ |..++++|++|+++||||| ++++||||+|+ |++|||||+|. +.+.|.|..
T Consensus 359 ~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~ 433 (1638)
T PRK14701 359 KIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSE 433 (1638)
T ss_pred eEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHH
Confidence 56789985 8899999999999999999 59999999999 99999999999 888777766
Q ss_pred ----cccccCCCcceEEEEECCC
Q 008207 448 ----GRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 448 ----GR~gR~g~~G~~i~l~~~~ 466 (574)
||+||.|.++.+++.+.+.
T Consensus 434 ~~~~~~a~~~g~~~~~~~~~~~~ 456 (1638)
T PRK14701 434 ILKIEEELKEGIPIEGVLDVFPE 456 (1638)
T ss_pred HHHhhhhcccCCcchhHHHhHHH
Confidence 9999999887776544443
No 62
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.6e-38 Score=343.28 Aligned_cols=324 Identities=18% Similarity=0.257 Sum_probs=233.1
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHH
Q 008207 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (574)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (574)
.|+ .|+++|..+++.+..|+ |+.+.||+|||++|++|++.....+. +++|++||++||.|.++.
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~-------------~v~VvTpt~~LA~qd~e~ 138 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGK-------------GVHLITVNDYLAKRDAEE 138 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCC-------------CeEEEeCCHHHHHHHHHH
Confidence 466 99999999999998887 99999999999999999986666543 499999999999999999
Q ss_pred HHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHH-HHhHhcC------CccCCCceEEEecCchhhh-----
Q 008207 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG------NIDLSSLKFRVLDEADEML----- 274 (574)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~~------~~~l~~~~~lVlDEah~~l----- 274 (574)
+..+....|++++++.|+.+...+.+ ...++||+|+||++| .|++... ...++.+.++||||||.|+
T Consensus 139 ~~~l~~~lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~ 217 (790)
T PRK09200 139 MGQVYEFLGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQ 217 (790)
T ss_pred HHHHHhhcCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCC
Confidence 99999999999999999998544433 345699999999999 5555432 2356889999999999986
Q ss_pred -----------cCCcHHHHHHHHHhccCc------cCceEEEEecc---------------------CchhHHHHHH--H
Q 008207 275 -----------RMGFVEDVELILGKVEDA------NKVQTLLFSAT---------------------LPSWVKHIST--K 314 (574)
Q Consensus 275 -----------~~~~~~~~~~il~~l~~~------~~~q~ll~SAT---------------------~~~~~~~~~~--~ 314 (574)
...++..+..+...+... ...+.+.++.. +..++..... .
T Consensus 218 tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~ 297 (790)
T PRK09200 218 TPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHV 297 (790)
T ss_pred CceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHH
Confidence 111333444444444321 01122222221 0011111000 1
Q ss_pred hcccCCeE------------------------------------------------------------------------
Q 008207 315 FLKSDKKT------------------------------------------------------------------------ 322 (574)
Q Consensus 315 ~~~~~~~~------------------------------------------------------------------------ 322 (574)
.+..+..+
T Consensus 298 ~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~ 377 (790)
T PRK09200 298 LFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEE 377 (790)
T ss_pred HhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHH
Confidence 11111111
Q ss_pred -----------EEEecCcccccccceeEEEEeCCchhhhhhhhHHHHh-hcCCCeEEEEecChHHHHHHHHhCC----CC
Q 008207 323 -----------IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC-YSSGGRTIIFTETKESASQLADLLP----GA 386 (574)
Q Consensus 323 -----------i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~lVF~~t~~~~~~l~~~l~----~~ 386 (574)
+.+.. ..+....... ..+.+....+...+...+.. ...+.++||||+|++.++.++..|. .+
T Consensus 378 ~e~~~~Y~l~v~~IPt-~kp~~r~d~~-~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~ 455 (790)
T PRK09200 378 KEFFEVYNMEVVQIPT-NRPIIRIDYP-DKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPH 455 (790)
T ss_pred HHHHHHhCCcEEECCC-CCCcccccCC-CeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCE
Confidence 11100 0000001111 11233445677777666654 3567899999999999999999997 56
Q ss_pred ccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCC---CCCc-----EEEEeCCCCCHhHHHHHhcccccCCCcce
Q 008207 387 RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDI---NDVQ-----LIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458 (574)
Q Consensus 387 ~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi---~~v~-----~VI~~d~p~s~~~yiqr~GR~gR~g~~G~ 458 (574)
..+||++.+.++..+...++.| +|+||||+++||+|| ++|. |||+|++|.+...|+||+|||||.|.+|.
T Consensus 456 ~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~ 533 (790)
T PRK09200 456 NLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGS 533 (790)
T ss_pred EEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCee
Confidence 7899999988888888877766 799999999999999 6998 99999999999999999999999999999
Q ss_pred EEEEECCCchHHH
Q 008207 459 AVMLYDPRKSSVS 471 (574)
Q Consensus 459 ~i~l~~~~~~~~~ 471 (574)
+++|++..+..+.
T Consensus 534 s~~~is~eD~l~~ 546 (790)
T PRK09200 534 SQFFISLEDDLLK 546 (790)
T ss_pred EEEEEcchHHHHH
Confidence 9999998744443
No 63
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=8.5e-39 Score=329.54 Aligned_cols=295 Identities=22% Similarity=0.240 Sum_probs=207.9
Q ss_pred cEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcch
Q 008207 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227 (574)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~ 227 (574)
|+++.||||||||++|++|++..+... ...+++|++|+++|+.|+++.+..+... .+..++|+...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~-----------~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~ 66 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ-----------KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSF 66 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC-----------CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHH
Confidence 689999999999999999999886542 2346999999999999999999876422 23334443321
Q ss_pred HH------------HHHHh------cCCCcEEEEChHHHHHhHhcCC----ccC--CCceEEEecCchhhhcCCcHHHHH
Q 008207 228 HA------------QEFKL------KKGIDVVIGTPGRIKDHIERGN----IDL--SSLKFRVLDEADEMLRMGFVEDVE 283 (574)
Q Consensus 228 ~~------------~~~~l------~~~~~IlV~Tp~~l~~~l~~~~----~~l--~~~~~lVlDEah~~l~~~~~~~~~ 283 (574)
.. ..... ....+|+|+||++++..+.++. +.+ -..++||+||||.+.+.++.. +.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~ 145 (358)
T TIGR01587 67 KRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-IL 145 (358)
T ss_pred HHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HH
Confidence 10 00000 1236899999999988776521 111 123799999999998765433 66
Q ss_pred HHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEE--eCCchhhhhhhhHHHHhhc
Q 008207 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL--PCSSSARSQVIPDIIRCYS 361 (574)
Q Consensus 284 ~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~l~~ll~~~~ 361 (574)
.++..+.. ...|+++||||+|..+..+...+... ......... .......+.+. ......+...+..++....
T Consensus 146 ~~l~~l~~-~~~~~i~~SATlp~~l~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 220 (358)
T TIGR01587 146 AVLEVLKD-NDVPILLMSATLPKFLKEYAEKIGYV-EFNEPLDLK---EERRFERHRFIKIESDKVGEISSLERLLEFIK 220 (358)
T ss_pred HHHHHHHH-cCCCEEEEecCchHHHHHHHhcCCCc-ccccCCCCc---cccccccccceeeccccccCHHHHHHHHHHhh
Confidence 66666652 36799999999998776666554321 111000000 00001112221 1122344556666776666
Q ss_pred CCCeEEEEecChHHHHHHHHhCC------CCccccccCCHHHHHHH----HHHHhCCCccEEEEeccccccCCCCCCcEE
Q 008207 362 SGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVT----LAGFRSGKFMTLVATNVAARGLDINDVQLI 431 (574)
Q Consensus 362 ~~~~~lVF~~t~~~~~~l~~~l~------~~~~lh~~~~~~~r~~~----~~~F~~g~~~vLvaTd~~~~Gldi~~v~~V 431 (574)
.++++||||+|++.++.++..|. .+..+||++++.+|.+. ++.|++|+.+|||||+++++|||++ +++|
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~v 299 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVM 299 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEE
Confidence 77899999999999999998885 26789999999999764 8999999999999999999999995 8999
Q ss_pred EEeCCCCCHhHHHHHhcccccCCCc----ceEEEEECC
Q 008207 432 IQCEPPRDVEAYIHRSGRTGRAGNT----GVAVMLYDP 465 (574)
Q Consensus 432 I~~d~p~s~~~yiqr~GR~gR~g~~----G~~i~l~~~ 465 (574)
|++..| .++|+||+||+||.|+. |.++++...
T Consensus 300 i~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~ 335 (358)
T TIGR01587 300 ITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIA 335 (358)
T ss_pred EEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeec
Confidence 998877 78999999999999863 356666554
No 64
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=4.7e-38 Score=335.04 Aligned_cols=301 Identities=17% Similarity=0.169 Sum_probs=217.3
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHH
Q 008207 129 IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (574)
Q Consensus 129 ~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~ 208 (574)
...|+++|.++++.++.+++.++++|||+|||+++...+...+... ..++|||+||++|+.||.+.+.
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~------------~~~vLilvpt~eL~~Q~~~~l~ 179 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENY------------EGKVLIIVPTTSLVTQMIDDFV 179 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcC------------CCeEEEEECcHHHHHHHHHHHH
Confidence 4589999999999999999999999999999997654332222221 2269999999999999999999
Q ss_pred HhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHh
Q 008207 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (574)
Q Consensus 209 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~ 288 (574)
.++......+..+.||.... .+.+|+|+||+++.+... ..+.++++||+||||++... .+..++..
T Consensus 180 ~~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~ 245 (501)
T PHA02558 180 DYRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITK 245 (501)
T ss_pred HhccccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHh
Confidence 88765555566677765432 347999999999976542 24688999999999999753 45667777
Q ss_pred ccCccCceEEEEeccCchhHHHHHH--HhcccCCeEEEEecCc----ccccccceeEEE---------------------
Q 008207 289 VEDANKVQTLLFSATLPSWVKHIST--KFLKSDKKTIDLVGNE----KMKASTNVRHIV--------------------- 341 (574)
Q Consensus 289 l~~~~~~q~ll~SAT~~~~~~~~~~--~~~~~~~~~i~~~~~~----~~~~~~~i~~~~--------------------- 341 (574)
++. ..++++||||++........ .++ .+....+.... .......+....
T Consensus 246 ~~~--~~~~lGLTATp~~~~~~~~~~~~~f--G~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 321 (501)
T PHA02558 246 LDN--CKFKFGLTGSLRDGKANILQYVGLF--GDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIK 321 (501)
T ss_pred hhc--cceEEEEeccCCCccccHHHHHHhh--CCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHH
Confidence 754 56899999998653221111 111 11111100000 000000000000
Q ss_pred EeCCchhhhhhhhHHHHhh-cCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEe
Q 008207 342 LPCSSSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416 (574)
Q Consensus 342 ~~~~~~~~~~~l~~ll~~~-~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT 416 (574)
.......+...+..++... ..+.++||||++.++++.|++.|. .+..+||++++.+|..+++.|++|...|||||
T Consensus 322 ~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT 401 (501)
T PHA02558 322 YITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVAS 401 (501)
T ss_pred HHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEE
Confidence 0111222334444443322 356789999999999999999987 67889999999999999999999999999999
Q ss_pred -ccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceE
Q 008207 417 -NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 459 (574)
Q Consensus 417 -d~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~ 459 (574)
+++++|+|+|++++||++++|.+...|+||+||++|.+..+..
T Consensus 402 ~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~ 445 (501)
T PHA02558 402 YGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSI 445 (501)
T ss_pred cceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCce
Confidence 9999999999999999999999999999999999999765533
No 65
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=3.4e-38 Score=335.32 Aligned_cols=319 Identities=20% Similarity=0.255 Sum_probs=228.2
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHH
Q 008207 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (574)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (574)
.|+ .|+++|..+.+.+..|+ |+.++||+|||++|++|++.....+. +++|++||++||.|.+++
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~-------------~V~VvTpt~~LA~qdae~ 116 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGK-------------GVHVVTVNDYLAQRDAEW 116 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCC-------------CEEEEcCCHHHHHHHHHH
Confidence 355 88999999999888776 99999999999999999964444332 389999999999999999
Q ss_pred HHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHH-HHhHhcC------CccCCCceEEEecCchhhhcC---
Q 008207 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG------NIDLSSLKFRVLDEADEMLRM--- 276 (574)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~~------~~~l~~~~~lVlDEah~~l~~--- 276 (574)
+..+....++++.+++|+.+...+... ..++|+|+||++| .+++..+ .+.++.+.++||||+|.|+-.
T Consensus 117 ~~~l~~~LGLsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaR 194 (745)
T TIGR00963 117 MGQVYRFLGLSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEAR 194 (745)
T ss_pred HHHHhccCCCeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhh
Confidence 999999999999999999986544433 3489999999999 8888765 356789999999999998620
Q ss_pred ------C-------cHHHHHHHHHhccCc------cCceEEEE-------------------------------------
Q 008207 277 ------G-------FVEDVELILGKVEDA------NKVQTLLF------------------------------------- 300 (574)
Q Consensus 277 ------~-------~~~~~~~il~~l~~~------~~~q~ll~------------------------------------- 300 (574)
| .+.....|...+... .+.+.+.+
T Consensus 195 tpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~ 274 (745)
T TIGR00963 195 TPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKE 274 (745)
T ss_pred hHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHH
Confidence 1 111122222222210 01111222
Q ss_pred ------------------------------------------------------------------------eccCchhH
Q 008207 301 ------------------------------------------------------------------------SATLPSWV 308 (574)
Q Consensus 301 ------------------------------------------------------------------------SAT~~~~~ 308 (574)
|+|.....
T Consensus 275 l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~ 354 (745)
T TIGR00963 275 LFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEE 354 (745)
T ss_pred HHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHH
Confidence 22221111
Q ss_pred HHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhhhhhh-hHHHHhhcCCCeEEEEecChHHHHHHHHhCC---
Q 008207 309 KHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI-PDIIRCYSSGGRTIIFTETKESASQLADLLP--- 384 (574)
Q Consensus 309 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l-~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~--- 384 (574)
..+...|- -.++.+.... +......... +......+...+ ..+...+..+.++||||+|...++.++..|.
T Consensus 355 ~E~~~iY~---l~vv~IPtnk-p~~R~d~~d~-i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~g 429 (745)
T TIGR00963 355 EEFEKIYN---LEVVVVPTNR-PVIRKDLSDL-VYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERG 429 (745)
T ss_pred HHHHHHhC---CCEEEeCCCC-CeeeeeCCCe-EEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcC
Confidence 11111110 0001100000 0000000011 122233444444 4455566788999999999999999999997
Q ss_pred -CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCC-------CcEEEEeCCCCCHhHHHHHhcccccCCCc
Q 008207 385 -GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIND-------VQLIIQCEPPRDVEAYIHRSGRTGRAGNT 456 (574)
Q Consensus 385 -~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~-------v~~VI~~d~p~s~~~yiqr~GR~gR~g~~ 456 (574)
....+||+ +.+|+..+..|+.+...|+||||+|+||+||+. ..|||++++|.|...|.||+|||||.|.+
T Consensus 430 i~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~ 507 (745)
T TIGR00963 430 IPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDP 507 (745)
T ss_pred CCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCC
Confidence 45678888 889999999999999999999999999999998 55999999999999999999999999999
Q ss_pred ceEEEEECCCchHH
Q 008207 457 GVAVMLYDPRKSSV 470 (574)
Q Consensus 457 G~~i~l~~~~~~~~ 470 (574)
|.+.+|++..+..+
T Consensus 508 G~s~~~ls~eD~l~ 521 (745)
T TIGR00963 508 GSSRFFLSLEDNLM 521 (745)
T ss_pred cceEEEEeccHHHH
Confidence 99999999874444
No 66
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.2e-37 Score=303.88 Aligned_cols=322 Identities=24% Similarity=0.270 Sum_probs=235.5
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHH
Q 008207 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (574)
Q Consensus 128 g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~ 207 (574)
+..+++.||......++.+ +.+++.|||.|||+.+++.+..++.+.+. ++|+++||+.|+.|.++.|
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~------------kvlfLAPTKPLV~Qh~~~~ 78 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGG------------KVLFLAPTKPLVLQHAEFC 78 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCC------------eEEEecCCchHHHHHHHHH
Confidence 3457889999998888765 99999999999999999999999887543 5999999999999999999
Q ss_pred HHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHH
Q 008207 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287 (574)
Q Consensus 208 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~ 287 (574)
.++.....-.++.++|..+.... ...+...+|+|+||..+.+-|..|.+++.++.++|+||||+-...--+-.+..-
T Consensus 79 ~~v~~ip~~~i~~ltGev~p~~R-~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~-- 155 (542)
T COG1111 79 RKVTGIPEDEIAALTGEVRPEER-EELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKE-- 155 (542)
T ss_pred HHHhCCChhheeeecCCCChHHH-HHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHH--
Confidence 99887777788899998887644 344555899999999999999999999999999999999996532222222221
Q ss_pred hccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccc-----cceeEEEEe-------------------
Q 008207 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAS-----TNVRHIVLP------------------- 343 (574)
Q Consensus 288 ~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~i~~~~~~------------------- 343 (574)
++....++.++++|||.......+..-.-+-+...|.+......... ..+.-+-+.
T Consensus 156 y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~ 235 (542)
T COG1111 156 YLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPR 235 (542)
T ss_pred HHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHH
Confidence 22223367899999998765544433221111111111100000000 000000000
Q ss_pred --------------------------------CC-c--------------------------------------------
Q 008207 344 --------------------------------CS-S-------------------------------------------- 346 (574)
Q Consensus 344 --------------------------------~~-~-------------------------------------------- 346 (574)
.. .
T Consensus 236 Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~ 315 (542)
T COG1111 236 LKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATK 315 (542)
T ss_pred HHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcc
Confidence 00 0
Q ss_pred -------------------------------hhhhhhhhHHHHhh---cCCCeEEEEecChHHHHHHHHhCC----CCc-
Q 008207 347 -------------------------------SARSQVIPDIIRCY---SSGGRTIIFTETKESASQLADLLP----GAR- 387 (574)
Q Consensus 347 -------------------------------~~~~~~l~~ll~~~---~~~~~~lVF~~t~~~~~~l~~~l~----~~~- 387 (574)
..|...+..++... ..+.++|||++.+++++.+.++|. .+.
T Consensus 316 ~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~ 395 (542)
T COG1111 316 GGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARV 395 (542)
T ss_pred cchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCccee
Confidence 01111222222211 234699999999999999999987 221
Q ss_pred --------cccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceE
Q 008207 388 --------ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 459 (574)
Q Consensus 388 --------~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~ 459 (574)
-...||+|.++..+++.|++|.++|||||++++.|||||.|++||.|++-.|+..++||.|||||. +.|.+
T Consensus 396 rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv 474 (542)
T COG1111 396 RFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRV 474 (542)
T ss_pred EEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeE
Confidence 123579999999999999999999999999999999999999999999999999999999999998 79999
Q ss_pred EEEECCC
Q 008207 460 VMLYDPR 466 (574)
Q Consensus 460 i~l~~~~ 466 (574)
++|++.+
T Consensus 475 ~vLvt~g 481 (542)
T COG1111 475 VVLVTEG 481 (542)
T ss_pred EEEEecC
Confidence 9999887
No 67
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.3e-37 Score=348.56 Aligned_cols=296 Identities=21% Similarity=0.316 Sum_probs=213.0
Q ss_pred HHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCc----HHHHHHHHHHHHH
Q 008207 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT----RELAKQVHEDFDV 209 (574)
Q Consensus 134 ~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Pt----reLa~Qv~~~~~~ 209 (574)
.+..+.+..+..++.++++|+||||||+ .+|.+-..... +....+++..|. ++||.||++++..
T Consensus 77 ~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~----------g~~g~I~~TQPRRlAArsLA~RVA~El~~ 144 (1294)
T PRK11131 77 QKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR----------GVKGLIGHTQPRRLAARTVANRIAEELET 144 (1294)
T ss_pred HHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC----------CCCCceeeCCCcHHHHHHHHHHHHHHHhh
Confidence 4455677777888889999999999999 46743222111 111134555674 5899999998863
Q ss_pred -hhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCch-hhhcCCcHHHHHHHHH
Q 008207 210 -YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD-EMLRMGFVEDVELILG 287 (574)
Q Consensus 210 -~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah-~~l~~~~~~~~~~il~ 287 (574)
++...|+.+ .+. .....+++|+|+|||+|++++.++.+ ++++++||||||| ++++.+|... .+..
T Consensus 145 ~lG~~VGY~v-------rf~---~~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg--~Lk~ 211 (1294)
T PRK11131 145 ELGGCVGYKV-------RFN---DQVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILG--YLKE 211 (1294)
T ss_pred hhcceeceee-------cCc---cccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHH--HHHH
Confidence 565555443 111 12245699999999999999987654 9999999999999 5888887643 2233
Q ss_pred hccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchh---hhhhhhHHHHh-----
Q 008207 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA---RSQVIPDIIRC----- 359 (574)
Q Consensus 288 ~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~l~~ll~~----- 359 (574)
.++..++.|+|+||||++. ..+.+.|. +...+.+.+.. ..+.+.|.+..... +.+.+..++..
T Consensus 212 lL~~rpdlKvILmSATid~--e~fs~~F~--~apvI~V~Gr~-----~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~ 282 (1294)
T PRK11131 212 LLPRRPDLKVIITSATIDP--ERFSRHFN--NAPIIEVSGRT-----YPVEVRYRPIVEEADDTERDQLQAIFDAVDELG 282 (1294)
T ss_pred hhhcCCCceEEEeeCCCCH--HHHHHHcC--CCCEEEEcCcc-----ccceEEEeecccccchhhHHHHHHHHHHHHHHh
Confidence 3343346899999999985 35555443 34456655432 23556666553221 12223332221
Q ss_pred hcCCCeEEEEecChHHHHHHHHhCC-------CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEE
Q 008207 360 YSSGGRTIIFTETKESASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLII 432 (574)
Q Consensus 360 ~~~~~~~lVF~~t~~~~~~l~~~l~-------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI 432 (574)
....+.+|||+++..+++.+++.|. .+..+||++++.+|.++++. .|..+||||||++++|||||+|++||
T Consensus 283 ~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVI 360 (1294)
T PRK11131 283 REGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVI 360 (1294)
T ss_pred cCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEE
Confidence 2356889999999999999999986 24579999999999999886 57899999999999999999999999
Q ss_pred EeC---------------CC---CCHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 433 QCE---------------PP---RDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 433 ~~d---------------~p---~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
++| +| .|.++|.||+|||||. .+|.||.||++.
T Consensus 361 D~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~ 411 (1294)
T PRK11131 361 DPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSED 411 (1294)
T ss_pred ECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHH
Confidence 986 34 4568999999999999 699999999965
No 68
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.9e-37 Score=331.79 Aligned_cols=319 Identities=18% Similarity=0.234 Sum_probs=220.1
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHH
Q 008207 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (574)
Q Consensus 128 g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~ 207 (574)
|. .|+++|......+.. ..|+.++||+|||++|++|++.....+. .++|++|+++||.|+++++
T Consensus 68 gl-rpydVQlig~l~l~~--G~Iaem~TGeGKTLta~Lpa~l~aL~g~-------------~V~VVTpn~yLA~Rdae~m 131 (762)
T TIGR03714 68 GM-FPYDVQVLGAIVLHQ--GNIAEMKTGEGKTLTATMPLYLNALTGK-------------GAMLVTTNDYLAKRDAEEM 131 (762)
T ss_pred CC-CccHHHHHHHHHhcC--CceeEecCCcchHHHHHHHHHHHhhcCC-------------ceEEeCCCHHHHHHHHHHH
Confidence 54 555555555554444 4799999999999999999887665432 3899999999999999999
Q ss_pred HHhhCCCCceEEEEeCCcc---hHHHHHHhcCCCcEEEEChHHH-HHhHhc------CCccCCCceEEEecCchhhhcC-
Q 008207 208 DVYGGAVGLTSCCLYGGAP---YHAQEFKLKKGIDVVIGTPGRI-KDHIER------GNIDLSSLKFRVLDEADEMLRM- 276 (574)
Q Consensus 208 ~~~~~~~~~~~~~~~gg~~---~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~------~~~~l~~~~~lVlDEah~~l~~- 276 (574)
..+....|+++.+++++.. ...+.+....+++|+++||++| .+++.. ....++.+.++|+||||.|+-.
T Consensus 132 ~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDe 211 (762)
T TIGR03714 132 GPVYEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDS 211 (762)
T ss_pred HHHHhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhcc
Confidence 9999999999998887632 3333445556799999999999 454432 2345788999999999998611
Q ss_pred ---------------CcHHHHHHHHHhccCc------cCceEEEEe----------------------------------
Q 008207 277 ---------------GFVEDVELILGKVEDA------NKVQTLLFS---------------------------------- 301 (574)
Q Consensus 277 ---------------~~~~~~~~il~~l~~~------~~~q~ll~S---------------------------------- 301 (574)
.++.....+...+... .+.+.+.++
T Consensus 212 artpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A 291 (762)
T TIGR03714 212 AQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRA 291 (762)
T ss_pred CcCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHH
Confidence 1333333444444321 011222222
Q ss_pred ---------------------------------------------------------------------------ccCch
Q 008207 302 ---------------------------------------------------------------------------ATLPS 306 (574)
Q Consensus 302 ---------------------------------------------------------------------------AT~~~ 306 (574)
+|...
T Consensus 292 ~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~ 371 (762)
T TIGR03714 292 HYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKV 371 (762)
T ss_pred HHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChh
Confidence 22211
Q ss_pred hHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhhhhhhhHHHH-hhcCCCeEEEEecChHHHHHHHHhCC-
Q 008207 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR-CYSSGGRTIIFTETKESASQLADLLP- 384 (574)
Q Consensus 307 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~-~~~~~~~~lVF~~t~~~~~~l~~~l~- 384 (574)
...++.+.|- -.++.+... .+....... -.+.+....|...+...+. .+..+.++||||+|++.++.++..|.
T Consensus 372 ~~~Ef~~iY~---l~v~~IPt~-kp~~r~d~~-d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~ 446 (762)
T TIGR03714 372 AEKEFIETYS---LSVVKIPTN-KPIIRIDYP-DKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLR 446 (762)
T ss_pred HHHHHHHHhC---CCEEEcCCC-CCeeeeeCC-CeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHH
Confidence 1111111110 001111000 000000000 1233344556666666554 44578899999999999999999987
Q ss_pred ---CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCC---------CCcEEEEeCCCCCHhHHHHHhccccc
Q 008207 385 ---GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN---------DVQLIIQCEPPRDVEAYIHRSGRTGR 452 (574)
Q Consensus 385 ---~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~---------~v~~VI~~d~p~s~~~yiqr~GR~gR 452 (574)
.+.++||++.+.++..+..+|+.| .|+||||+++||+||+ ++.+|++|++|..... +||+|||||
T Consensus 447 ~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGR 523 (762)
T TIGR03714 447 EGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGR 523 (762)
T ss_pred CCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccC
Confidence 567899999998888888777777 7999999999999999 9999999999998777 999999999
Q ss_pred CCCcceEEEEECCCchHH
Q 008207 453 AGNTGVAVMLYDPRKSSV 470 (574)
Q Consensus 453 ~g~~G~~i~l~~~~~~~~ 470 (574)
.|.+|.+++|++..+..+
T Consensus 524 qG~~G~s~~~is~eD~l~ 541 (762)
T TIGR03714 524 QGDPGSSQFFVSLEDDLI 541 (762)
T ss_pred CCCceeEEEEEccchhhh
Confidence 999999999999874443
No 69
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.5e-36 Score=330.86 Aligned_cols=333 Identities=23% Similarity=0.343 Sum_probs=254.6
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEE
Q 008207 115 RISVPLREKLKSKGIESLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193 (574)
Q Consensus 115 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il-~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil 193 (574)
.+++.+.+-+...|+.+++|-|+.++...+ .++|+|+++|||||||+.+++.+++.+..+. .++++|
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~------------~k~vYi 82 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGG------------GKVVYI 82 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcC------------CcEEEE
Confidence 367788888888899899998888886654 6699999999999999999999999998752 249999
Q ss_pred eCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhh
Q 008207 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (574)
Q Consensus 194 ~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~ 273 (574)
||+|+||.+.+++|.+| ...|++|...+|+...... ...+++|+|+||+.+-..+.+...++..+++||+||+|.+
T Consensus 83 vPlkALa~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l 158 (766)
T COG1204 83 VPLKALAEEKYEEFSRL-EELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLL 158 (766)
T ss_pred eChHHHHHHHHHHhhhH-HhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeec
Confidence 99999999999999944 4678999999999875442 2345999999999997777776668899999999999988
Q ss_pred hcCCcHHHHHHHHHhccCcc-CceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCc------
Q 008207 274 LRMGFVEDVELILGKVEDAN-KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS------ 346 (574)
Q Consensus 274 l~~~~~~~~~~il~~l~~~~-~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~------ 346 (574)
.+......++.|...+...+ ..|++.+|||+|+.- +++ .|+..................... +.++....
T Consensus 159 ~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~-evA-~wL~a~~~~~~~rp~~l~~~v~~~-~~~~~~~~~~k~~~ 235 (766)
T COG1204 159 GDRTRGPVLESIVARMRRLNELIRIVGLSATLPNAE-EVA-DWLNAKLVESDWRPVPLRRGVPYV-GAFLGADGKKKTWP 235 (766)
T ss_pred CCcccCceehhHHHHHHhhCcceEEEEEeeecCCHH-HHH-HHhCCcccccCCCCcccccCCccc-eEEEEecCcccccc
Confidence 77766777777777665532 379999999999843 333 344222221111111111111111 22222221
Q ss_pred -hhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC-----------------------------------------
Q 008207 347 -SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----------------------------------------- 384 (574)
Q Consensus 347 -~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----------------------------------------- 384 (574)
......+..++.....++++||||+|+..+...+..+.
T Consensus 236 ~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~ 315 (766)
T COG1204 236 LLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLR 315 (766)
T ss_pred ccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHh
Confidence 23345666667777889999999999988765555442
Q ss_pred CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEE----EeC-----CCCCHhHHHHHhcccccCCC
Q 008207 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLII----QCE-----PPRDVEAYIHRSGRTGRAGN 455 (574)
Q Consensus 385 ~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI----~~d-----~p~s~~~yiqr~GR~gR~g~ 455 (574)
++..+|++++..+|..+.+.|+.|.++||+||..++.|+|+|.-..|| .|+ .+-+.-+|+|++|||||-|-
T Consensus 316 GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~ 395 (766)
T COG1204 316 GVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGY 395 (766)
T ss_pred CccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCc
Confidence 467899999999999999999999999999999999999999877777 477 66788999999999999885
Q ss_pred --cceEEEEECCC
Q 008207 456 --TGVAVMLYDPR 466 (574)
Q Consensus 456 --~G~~i~l~~~~ 466 (574)
.|.++.+.+..
T Consensus 396 d~~G~~~i~~~~~ 408 (766)
T COG1204 396 DDYGEAIILATSH 408 (766)
T ss_pred CCCCcEEEEecCc
Confidence 67777777433
No 70
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.3e-36 Score=303.17 Aligned_cols=339 Identities=25% Similarity=0.357 Sum_probs=267.4
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCC
Q 008207 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (574)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 185 (574)
+.-.++.+.+++.+.+.|+..|++.+.|+|..++.. +++|.|++++++|+||||+..-++-+..+..+..
T Consensus 192 ~r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~--------- 262 (830)
T COG1202 192 ERVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGK--------- 262 (830)
T ss_pred ccccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCC---------
Confidence 345678899999999999999999999999999987 7799999999999999999988888888876433
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHH----HHhcCCCcEEEEChHHHHHhHhcCCccCCC
Q 008207 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE----FKLKKGIDVVIGTPGRIKDHIERGNIDLSS 261 (574)
Q Consensus 186 ~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~----~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~ 261 (574)
+.|+++|..+||+|-+++|+.--..+++.+..-.|...+.... ......+||+|+|++.+-.++..+ -++.+
T Consensus 263 ---KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgd 338 (830)
T COG1202 263 ---KMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGD 338 (830)
T ss_pred ---eEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-Ccccc
Confidence 4899999999999999999865577888888777765443322 122345899999999995555555 67999
Q ss_pred ceEEEecCchhhhcCCcHHHHHHHHHhccCc-cCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEE
Q 008207 262 LKFRVLDEADEMLRMGFVEDVELILGKVEDA-NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340 (574)
Q Consensus 262 ~~~lVlDEah~~l~~~~~~~~~~il~~l~~~-~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~ 340 (574)
+..||+||+|.+-+......+.-++..+... +..|+|.+|||..+.- .+++.+- ...+.... ...+--.|+
T Consensus 339 iGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~-elA~~l~---a~lV~y~~----RPVplErHl 410 (830)
T COG1202 339 IGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPE-ELAKKLG---AKLVLYDE----RPVPLERHL 410 (830)
T ss_pred cceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChH-HHHHHhC---CeeEeecC----CCCChhHee
Confidence 9999999999886645445555554444321 2589999999997643 4454432 22332221 223334466
Q ss_pred EEeCCchhhhhhhhHHHHhh-------cCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCC
Q 008207 341 VLPCSSSARSQVIPDIIRCY-------SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409 (574)
Q Consensus 341 ~~~~~~~~~~~~l~~ll~~~-------~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~ 409 (574)
.+.-+...|..++..+.+.. ...+++|||++|+..|+.|+..|. .+.++|++|+..+|..+...|.+++
T Consensus 411 vf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~ 490 (830)
T COG1202 411 VFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQE 490 (830)
T ss_pred eeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCC
Confidence 66556788888888887643 245789999999999999999998 7889999999999999999999999
Q ss_pred ccEEEEeccccccCCCCCCcEEEE---eCCC-CCHhHHHHHhcccccCCC--cceEEEEECCC
Q 008207 410 FMTLVATNVAARGLDINDVQLIIQ---CEPP-RDVEAYIHRSGRTGRAGN--TGVAVMLYDPR 466 (574)
Q Consensus 410 ~~vLvaTd~~~~Gldi~~v~~VI~---~d~p-~s~~~yiqr~GR~gR~g~--~G~~i~l~~~~ 466 (574)
+.++|+|-+++.|+|+|.-.+|+- .+.- .|+..|.|+.|||||-+- .|.+|+++.|.
T Consensus 491 l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 491 LAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred cceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 999999999999999997654431 2222 389999999999999875 79999999998
No 71
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=3.5e-35 Score=331.29 Aligned_cols=322 Identities=25% Similarity=0.293 Sum_probs=232.8
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHH
Q 008207 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (574)
Q Consensus 128 g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~ 207 (574)
+..++++||.+++..++.+ ++++++|||+|||+++++++...+.. .+.++|||+||++|+.|+.+.+
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~------------~~~~vLvl~Pt~~L~~Q~~~~~ 78 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK------------KGGKVLILAPTKPLVEQHAEFF 78 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh------------CCCeEEEEeCcHHHHHHHHHHH
Confidence 4558899999999988877 99999999999999999999887732 1236999999999999999999
Q ss_pred HHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHH
Q 008207 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287 (574)
Q Consensus 208 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~ 287 (574)
+.+....+..+..++|+.+... ...+..+.+|+|+||+.+...+..+.+.+.++++||+||||++........+...+.
T Consensus 79 ~~~~~~~~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~ 157 (773)
T PRK13766 79 RKFLNIPEEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYH 157 (773)
T ss_pred HHHhCCCCceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHH
Confidence 9876554567888888877653 344555689999999999988888888899999999999999865433333333333
Q ss_pred hccCccCceEEEEeccCchhH---HHHHHHhccc-----------------CCe--EEEEecCcc---------------
Q 008207 288 KVEDANKVQTLLFSATLPSWV---KHISTKFLKS-----------------DKK--TIDLVGNEK--------------- 330 (574)
Q Consensus 288 ~l~~~~~~q~ll~SAT~~~~~---~~~~~~~~~~-----------------~~~--~i~~~~~~~--------------- 330 (574)
.... .+++++||||..... ..+....... ... .+.+.-...
T Consensus 158 ~~~~--~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~ 235 (773)
T PRK13766 158 EDAK--NPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDR 235 (773)
T ss_pred hcCC--CCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHH
Confidence 3322 568999999964322 1211111000 000 000000000
Q ss_pred ------cccc--c--------------ceeEEEE----------------------------------------------
Q 008207 331 ------MKAS--T--------------NVRHIVL---------------------------------------------- 342 (574)
Q Consensus 331 ------~~~~--~--------------~i~~~~~---------------------------------------------- 342 (574)
.... . .+.....
T Consensus 236 l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~ 315 (773)
T PRK13766 236 LKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEAR 315 (773)
T ss_pred HHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhcc
Confidence 0000 0 0000000
Q ss_pred --------------------------eCCchhhhhhhhHHHHhh---cCCCeEEEEecChHHHHHHHHhCC----CCccc
Q 008207 343 --------------------------PCSSSARSQVIPDIIRCY---SSGGRTIIFTETKESASQLADLLP----GARAL 389 (574)
Q Consensus 343 --------------------------~~~~~~~~~~l~~ll~~~---~~~~~~lVF~~t~~~~~~l~~~l~----~~~~l 389 (574)
......|...|..++... ..+.++||||+++..++.|...|. .+..+
T Consensus 316 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~ 395 (773)
T PRK13766 316 SSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRF 395 (773)
T ss_pred ccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEE
Confidence 000112334444455432 367899999999999999999985 34456
Q ss_pred ccc--------CCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEE
Q 008207 390 HGD--------IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461 (574)
Q Consensus 390 h~~--------~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~ 461 (574)
||. +++.+|.++++.|++|+++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| .|.+++
T Consensus 396 ~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~ 474 (773)
T PRK13766 396 VGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVV 474 (773)
T ss_pred EccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEE
Confidence 664 99999999999999999999999999999999999999999999999999999999999987 488888
Q ss_pred EECCC
Q 008207 462 LYDPR 466 (574)
Q Consensus 462 l~~~~ 466 (574)
|+...
T Consensus 475 l~~~~ 479 (773)
T PRK13766 475 LIAKG 479 (773)
T ss_pred EEeCC
Confidence 88765
No 72
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=5.5e-35 Score=298.20 Aligned_cols=289 Identities=19% Similarity=0.234 Sum_probs=198.2
Q ss_pred HHHHHHHHHhcCCc--EEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhC
Q 008207 135 IQAMTFDMVLDGSD--LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG 212 (574)
Q Consensus 135 ~Q~~~i~~il~~~d--vi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~ 212 (574)
+|.++++.+.++.+ ++++||||||||.+|++|++.. . .++++++|+++|+.|+++.+..+..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~---~-------------~~~~~~~P~~aL~~~~~~~~~~~~~ 64 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG---E-------------NDTIALYPTNALIEDQTEAIKEFVD 64 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc---C-------------CCEEEEeChHHHHHHHHHHHHHHHH
Confidence 49999999998875 7889999999999999999841 1 1389999999999999999887753
Q ss_pred C----CCceEEEEeCCcchH--HHH------------------HHhcCCCcEEEEChHHHHHhHhcC-----Cc---cCC
Q 008207 213 A----VGLTSCCLYGGAPYH--AQE------------------FKLKKGIDVVIGTPGRIKDHIERG-----NI---DLS 260 (574)
Q Consensus 213 ~----~~~~~~~~~gg~~~~--~~~------------------~~l~~~~~IlV~Tp~~l~~~l~~~-----~~---~l~ 260 (574)
. .+..+..+.|.+... ... ......++|+++||+.|..++.+. .. .+.
T Consensus 65 ~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~ 144 (357)
T TIGR03158 65 VFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYT 144 (357)
T ss_pred hcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhc
Confidence 2 356666666653221 000 111246889999999997654331 11 257
Q ss_pred CceEEEecCchhhhcCC-----cHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcc-----
Q 008207 261 SLKFRVLDEADEMLRMG-----FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK----- 330 (574)
Q Consensus 261 ~~~~lVlDEah~~l~~~-----~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~----- 330 (574)
++++||+||+|.+...+ +.-....++..... ..+++++|||+++.+..............+.+.+...
T Consensus 145 ~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~ 222 (357)
T TIGR03158 145 KFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFEC--RRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDN 222 (357)
T ss_pred CCCEEEEecccccCcccchhhhhhhHHHHHHHhhhc--CCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCC
Confidence 89999999999875333 11123333333332 4699999999999877766654211112222222200
Q ss_pred ------------cccccceeEEEEeCCchhhhhhhhHHHH----hh--cCCCeEEEEecChHHHHHHHHhCCC------C
Q 008207 331 ------------MKASTNVRHIVLPCSSSARSQVIPDIIR----CY--SSGGRTIIFTETKESASQLADLLPG------A 386 (574)
Q Consensus 331 ------------~~~~~~i~~~~~~~~~~~~~~~l~~ll~----~~--~~~~~~lVF~~t~~~~~~l~~~l~~------~ 386 (574)
......+.+.+.. ....+...+..++. .. ..++++||||+|+..++.++..|.. +
T Consensus 223 ~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~ 301 (357)
T TIGR03158 223 PELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDI 301 (357)
T ss_pred hhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceE
Confidence 0011245555544 22333333333222 22 2567999999999999999999972 4
Q ss_pred ccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccc
Q 008207 387 RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451 (574)
Q Consensus 387 ~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~g 451 (574)
..+||.+++.+|.+. ++..|||||++++||||++.+ +|| ++ |.+.+.|+||+||+|
T Consensus 302 ~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 302 GRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 578999999998764 478999999999999999987 666 55 899999999999997
No 73
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=9.8e-35 Score=321.10 Aligned_cols=334 Identities=22% Similarity=0.345 Sum_probs=264.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeC
Q 008207 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195 (574)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~P 195 (574)
....+..++.+.|+..|+++|.+++..+.+|+|+||+.+||||||.+|++||++.+...+.. ++|+|-|
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-----------~AL~lYP 123 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-----------RALLLYP 123 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-----------cEEEEec
Confidence 34556888999999999999999999999999999999999999999999999999987542 6999999
Q ss_pred cHHHHHHHHHHHHHhhCCCC--ceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCC----ccCCCceEEEecC
Q 008207 196 TRELAKQVHEDFDVYGGAVG--LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN----IDLSSLKFRVLDE 269 (574)
Q Consensus 196 treLa~Qv~~~~~~~~~~~~--~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~----~~l~~~~~lVlDE 269 (574)
|++||+.+.+.|.++....+ +.+..+.|.+..........+.++|+++||.+|..++.+.. +.++++++||+||
T Consensus 124 tnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDE 203 (851)
T COG1205 124 TNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDE 203 (851)
T ss_pred hhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEec
Confidence 99999999999998887776 88888888888877767788899999999999988666543 3467899999999
Q ss_pred chhhhcCCcHHHHHHHHHhccC-----ccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeC
Q 008207 270 ADEMLRMGFVEDVELILGKVED-----ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344 (574)
Q Consensus 270 ah~~l~~~~~~~~~~il~~l~~-----~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~ 344 (574)
+|.. .-.|+.++..++..+.. ..++|+|+.|||+...- .++..++....... +... ..+....++....
T Consensus 204 lHtY-rGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~-e~~~~l~~~~f~~~-v~~~---g~~~~~~~~~~~~ 277 (851)
T COG1205 204 LHTY-RGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPG-EFAEELFGRDFEVP-VDED---GSPRGLRYFVRRE 277 (851)
T ss_pred ceec-cccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChH-HHHHHhcCCcceee-ccCC---CCCCCceEEEEeC
Confidence 9976 44577777666655532 23689999999997754 45555553333331 2221 2233333333333
Q ss_pred C---------chhhhhhhhHHHH-hhcCCCeEEEEecChHHHHHHHHhCC------------CCccccccCCHHHHHHHH
Q 008207 345 S---------SSARSQVIPDIIR-CYSSGGRTIIFTETKESASQLADLLP------------GARALHGDIQQSQREVTL 402 (574)
Q Consensus 345 ~---------~~~~~~~l~~ll~-~~~~~~~~lVF~~t~~~~~~l~~~l~------------~~~~lh~~~~~~~r~~~~ 402 (574)
+ .......+..++. ....+-++|+|+.++..++.+....+ .+..++|++...+|.++.
T Consensus 278 p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie 357 (851)
T COG1205 278 PPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIE 357 (851)
T ss_pred CcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHH
Confidence 3 1123333333332 23467899999999999998862221 467899999999999999
Q ss_pred HHHhCCCccEEEEeccccccCCCCCCcEEEEeCCCC-CHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR-DVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 403 ~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~-s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
..|+.|+..++++|+++.-|+||.+++.||.++.|. +..++.||+||+||.++.+..+.++..+
T Consensus 358 ~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 358 AEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred HHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 999999999999999999999999999999999999 8999999999999999888887777754
No 74
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.9e-34 Score=324.46 Aligned_cols=305 Identities=19% Similarity=0.277 Sum_probs=213.2
Q ss_pred CCCCCcHHH---HHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHH
Q 008207 128 GIESLFPIQ---AMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (574)
Q Consensus 128 g~~~~~~~Q---~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (574)
.|....|+. .+.+..+..++.+|++|+||||||.. +|.+-.-.. . +...++++..|.|--|..++
T Consensus 61 ~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~-~---------~~~~~I~~tQPRRlAA~svA 128 (1283)
T TIGR01967 61 RYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELG-R---------GSHGLIGHTQPRRLAARTVA 128 (1283)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcC-C---------CCCceEecCCccHHHHHHHH
Confidence 344444544 35667777888899999999999994 564422211 1 12235777889998777777
Q ss_pred HHHH-HhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCch-hhhcCCcHHH-
Q 008207 205 EDFD-VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD-EMLRMGFVED- 281 (574)
Q Consensus 205 ~~~~-~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah-~~l~~~~~~~- 281 (574)
..+. .++...|-.|+.-.. ... .....+.|+|+|+|+|++.+.++. .++++++||||||| ++++.+|.-.
T Consensus 129 ~RvA~elg~~lG~~VGY~vR---~~~---~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~l 201 (1283)
T TIGR01967 129 QRIAEELGTPLGEKVGYKVR---FHD---QVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGY 201 (1283)
T ss_pred HHHHHHhCCCcceEEeeEEc---CCc---ccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHH
Confidence 6664 333333333332221 111 124568999999999999998765 48999999999999 5888877654
Q ss_pred HHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCch------hhhhhhhH
Q 008207 282 VELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS------ARSQVIPD 355 (574)
Q Consensus 282 ~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~l~~ 355 (574)
+..++... +.+|+|+||||++. ..+.+.|. +...+.+.+.. ..+...|...... .....+..
T Consensus 202 Lk~il~~r---pdLKlIlmSATld~--~~fa~~F~--~apvI~V~Gr~-----~PVev~Y~~~~~~~~~~~~~~~~~i~~ 269 (1283)
T TIGR01967 202 LKQLLPRR---PDLKIIITSATIDP--ERFSRHFN--NAPIIEVSGRT-----YPVEVRYRPLVEEQEDDDLDQLEAILD 269 (1283)
T ss_pred HHHHHhhC---CCCeEEEEeCCcCH--HHHHHHhc--CCCEEEECCCc-----ccceeEEecccccccchhhhHHHHHHH
Confidence 45554443 36899999999975 45555543 34456555432 2234444443211 12223333
Q ss_pred HHHhh--cCCCeEEEEecChHHHHHHHHhCC-------CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCC
Q 008207 356 IIRCY--SSGGRTIIFTETKESASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426 (574)
Q Consensus 356 ll~~~--~~~~~~lVF~~t~~~~~~l~~~l~-------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~ 426 (574)
.+... ...+.+|||+++..+++.++..|. .+..+||+|++.+|.++++.+ +..+||||||++++|||||
T Consensus 270 ~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIp 347 (1283)
T TIGR01967 270 AVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVP 347 (1283)
T ss_pred HHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccC
Confidence 33221 245899999999999999999886 256799999999999997654 3479999999999999999
Q ss_pred CCcEEEEeCCC------------------CCHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 427 DVQLIIQCEPP------------------RDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 427 ~v~~VI~~d~p------------------~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
+|++||+++++ .|.++|.||+|||||.| +|.||.||+..
T Consensus 348 gV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~ 404 (1283)
T TIGR01967 348 GIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEE 404 (1283)
T ss_pred CeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHH
Confidence 99999999954 36689999999999997 99999999965
No 75
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=3.4e-34 Score=300.71 Aligned_cols=322 Identities=24% Similarity=0.296 Sum_probs=228.6
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHH
Q 008207 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (574)
Q Consensus 128 g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~ 207 (574)
+...++.||.+.+..+| |+++|+++|||+|||++++..+++++.+.+. .++++++||+-|+.|....+
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-----------~KiVF~aP~~pLv~QQ~a~~ 126 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-----------GKVVFLAPTRPLVNQQIACF 126 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc-----------ceEEEeeCCchHHHHHHHHH
Confidence 45688999999999989 9999999999999999999999999988654 36999999999999999777
Q ss_pred HHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCcc-CCCceEEEecCchhhhcCCcHHHHHHHH
Q 008207 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNID-LSSLKFRVLDEADEMLRMGFVEDVELIL 286 (574)
Q Consensus 208 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~-l~~~~~lVlDEah~~l~~~~~~~~~~il 286 (574)
..++.. ..+....||.........+....+|+|+||..|.+.|.++..+ |+.+.++||||||+-....-+..+..-+
T Consensus 127 ~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~ 204 (746)
T KOG0354|consen 127 SIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREY 204 (746)
T ss_pred hhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHH
Confidence 777644 5666666775544445566677999999999999999886654 5999999999999976555455444333
Q ss_pred HhccCccCceEEEEeccCchhHHHHHHHhcccC-----------------------------------------------
Q 008207 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLKSD----------------------------------------------- 319 (574)
Q Consensus 287 ~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~----------------------------------------------- 319 (574)
-.++.. ..|+|++|||+............+-.
T Consensus 205 l~~k~~-~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l 283 (746)
T KOG0354|consen 205 LDLKNQ-GNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLL 283 (746)
T ss_pred HHhhhc-cccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHH
Confidence 333332 33999999996543322221110000
Q ss_pred -----CeEEEEecCcc----------ccccc--------------------------cee--------------------
Q 008207 320 -----KKTIDLVGNEK----------MKAST--------------------------NVR-------------------- 338 (574)
Q Consensus 320 -----~~~i~~~~~~~----------~~~~~--------------------------~i~-------------------- 338 (574)
...+....... ..... .++
T Consensus 284 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~ 363 (746)
T KOG0354|consen 284 QQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKY 363 (746)
T ss_pred HHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHH
Confidence 00000000000 00000 000
Q ss_pred ---------------------EEEEeC-CchhhhhhhhHHHHh---hcCCCeEEEEecChHHHHHHHHhCC-------CC
Q 008207 339 ---------------------HIVLPC-SSSARSQVIPDIIRC---YSSGGRTIIFTETKESASQLADLLP-------GA 386 (574)
Q Consensus 339 ---------------------~~~~~~-~~~~~~~~l~~ll~~---~~~~~~~lVF~~t~~~~~~l~~~l~-------~~ 386 (574)
++.... ....+...+..++.. ..+..++||||.+++.|..|..+|. +.
T Consensus 364 ~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~ 443 (746)
T KOG0354|consen 364 LKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKA 443 (746)
T ss_pred HHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhccccc
Confidence 000000 001122222222221 1345689999999999999998876 11
Q ss_pred cc--------ccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcce
Q 008207 387 RA--------LHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458 (574)
Q Consensus 387 ~~--------lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~ 458 (574)
.. -..+|+|.++..+++.|++|.++|||||.+++.||||+.|++||-||.-.++...+||.|| ||+ +.|.
T Consensus 444 ~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~ 521 (746)
T KOG0354|consen 444 EIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSK 521 (746)
T ss_pred ceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCe
Confidence 11 1248999999999999999999999999999999999999999999999999999999999 999 6899
Q ss_pred EEEEECCC
Q 008207 459 AVMLYDPR 466 (574)
Q Consensus 459 ~i~l~~~~ 466 (574)
|+++++..
T Consensus 522 ~vll~t~~ 529 (746)
T KOG0354|consen 522 CVLLTTGS 529 (746)
T ss_pred EEEEEcch
Confidence 99999843
No 76
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.1e-33 Score=302.88 Aligned_cols=323 Identities=19% Similarity=0.193 Sum_probs=224.4
Q ss_pred CCCcHHHHHHHHHHhc-C--CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHH
Q 008207 130 ESLFPIQAMTFDMVLD-G--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il~-~--~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (574)
..|+|+|.+++..+.. | +..+++.|||+|||++.+..+. .+.. ++|||||+..|+.||.++
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l~k---------------~tLILvps~~Lv~QW~~e 317 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TVKK---------------SCLVLCTSAVSVEQWKQQ 317 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-HhCC---------------CEEEEeCcHHHHHHHHHH
Confidence 4789999999998873 3 4789999999999998765544 2321 389999999999999999
Q ss_pred HHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcC--------CccCCCceEEEecCchhhhcCCc
Q 008207 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG--------NIDLSSLKFRVLDEADEMLRMGF 278 (574)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~--------~~~l~~~~~lVlDEah~~l~~~~ 278 (574)
|..|.......+..++|+... .......|+|+|+..+.....+. .+.-..+.+||+||||++..
T Consensus 318 f~~~~~l~~~~I~~~tg~~k~-----~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA--- 389 (732)
T TIGR00603 318 FKMWSTIDDSQICRFTSDAKE-----RFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA--- 389 (732)
T ss_pred HHHhcCCCCceEEEEecCccc-----ccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH---
Confidence 999875555666666665322 11234789999999885432221 12234688999999999853
Q ss_pred HHHHHHHHHhccCccCceEEEEeccCchhHHHH--HHHhcccCCeEEEEecCc----ccccccceeEEEE----------
Q 008207 279 VEDVELILGKVEDANKVQTLLFSATLPSWVKHI--STKFLKSDKKTIDLVGNE----KMKASTNVRHIVL---------- 342 (574)
Q Consensus 279 ~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~--~~~~~~~~~~~i~~~~~~----~~~~~~~i~~~~~---------- 342 (574)
..+..++..+.. ...++||||+...-... ...++ .+......-.+ ............+
T Consensus 390 -~~fr~il~~l~a---~~RLGLTATP~ReD~~~~~L~~Li--GP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~y 463 (732)
T TIGR00603 390 -AMFRRVLTIVQA---HCKLGLTATLVREDDKITDLNFLI--GPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREY 463 (732)
T ss_pred -HHHHHHHHhcCc---CcEEEEeecCcccCCchhhhhhhc--CCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHH
Confidence 445556666543 35799999985321111 11111 22222211100 0001111111111
Q ss_pred -----------eCCchhhhhhhhHHHHhhc-CCCeEEEEecChHHHHHHHHhCCCCccccccCCHHHHHHHHHHHhCC-C
Q 008207 343 -----------PCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSG-K 409 (574)
Q Consensus 343 -----------~~~~~~~~~~l~~ll~~~~-~~~~~lVF~~t~~~~~~l~~~l~~~~~lh~~~~~~~r~~~~~~F~~g-~ 409 (574)
...+..|...+..++..+. .+.++||||.+...+..++..|. +..+||++++.+|.++++.|+.| .
T Consensus 464 l~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-~~~I~G~ts~~ER~~il~~Fr~~~~ 542 (732)
T TIGR00603 464 LRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-KPFIYGPTSQQERMQILQNFQHNPK 542 (732)
T ss_pred HHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-CceEECCCCHHHHHHHHHHHHhCCC
Confidence 1122345556666776553 67899999999999999999994 67799999999999999999875 8
Q ss_pred ccEEEEeccccccCCCCCCcEEEEeCCC-CCHhHHHHHhcccccCCCcceE-------EEEECCC--chHH----HHHHH
Q 008207 410 FMTLVATNVAARGLDINDVQLIIQCEPP-RDVEAYIHRSGRTGRAGNTGVA-------VMLYDPR--KSSV----SKIER 475 (574)
Q Consensus 410 ~~vLvaTd~~~~Gldi~~v~~VI~~d~p-~s~~~yiqr~GR~gR~g~~G~~-------i~l~~~~--~~~~----~~i~~ 475 (574)
+++||+|+++.+|||+|++++||+++.| .|...|+||+||++|.+..|.+ |.|++++ +..+ +++.-
T Consensus 543 i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~ 622 (732)
T TIGR00603 543 VNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLV 622 (732)
T ss_pred ccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHH
Confidence 8999999999999999999999999998 4999999999999999876664 8899987 2222 23333
Q ss_pred HhCCccee
Q 008207 476 ESGVKFEH 483 (574)
Q Consensus 476 ~~~~~~~~ 483 (574)
..|..+.-
T Consensus 623 ~qGY~~~v 630 (732)
T TIGR00603 623 DQGYSFKV 630 (732)
T ss_pred HCCCeeEE
Confidence 44655555
No 77
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=5.1e-34 Score=312.87 Aligned_cols=320 Identities=23% Similarity=0.284 Sum_probs=253.6
Q ss_pred HHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHH
Q 008207 123 KLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ 202 (574)
Q Consensus 123 ~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Q 202 (574)
.....|+...+|-|.++|..++.|+|+++..|||.||+++|.+|++ +..+ -.|||.|..+|...
T Consensus 256 l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~--l~~g--------------itvVISPL~SLm~D 319 (941)
T KOG0351|consen 256 LKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPAL--LLGG--------------VTVVISPLISLMQD 319 (941)
T ss_pred HHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccc--ccCC--------------ceEEeccHHHHHHH
Confidence 3356799999999999999999999999999999999999999987 2222 47999999999987
Q ss_pred HHHHHHHhhCCCCceEEEEeCCcchHHHH---HHhc-C--CCcEEEEChHHHHHhH--hcCCccCCC---ceEEEecCch
Q 008207 203 VHEDFDVYGGAVGLTSCCLYGGAPYHAQE---FKLK-K--GIDVVIGTPGRIKDHI--ERGNIDLSS---LKFRVLDEAD 271 (574)
Q Consensus 203 v~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~-~--~~~IlV~Tp~~l~~~l--~~~~~~l~~---~~~lVlDEah 271 (574)
+...+. ..++....+.++.....+. ..+. . ..+|+..||+.+...- .+....+.. +..+|+||||
T Consensus 320 Qv~~L~----~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAH 395 (941)
T KOG0351|consen 320 QVTHLS----KKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAH 395 (941)
T ss_pred HHHhhh----hcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHH
Confidence 666553 3568888888888775332 2222 2 5899999999985432 222223444 8899999999
Q ss_pred hhhcCC--cHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhh
Q 008207 272 EMLRMG--FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349 (574)
Q Consensus 272 ~~l~~~--~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~ 349 (574)
+...|| |++++..+.......+...+|.+|||.+..+..-+-..+.-....+. .. .....|+...+..-.....
T Consensus 396 CVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~--~~--sfnR~NL~yeV~~k~~~~~ 471 (941)
T KOG0351|consen 396 CVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELF--KS--SFNRPNLKYEVSPKTDKDA 471 (941)
T ss_pred HhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCccee--cc--cCCCCCceEEEEeccCccc
Confidence 999998 88888877666555556789999999998887766666532222221 11 1333455444443333334
Q ss_pred hhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCC
Q 008207 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDI 425 (574)
Q Consensus 350 ~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi 425 (574)
...+...+....+....||||.++.+++.++..|+ .+..+|++|+..+|..+...|..++++|++||=++++|||.
T Consensus 472 ~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK 551 (941)
T KOG0351|consen 472 LLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDK 551 (941)
T ss_pred hHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCC
Confidence 44444555556688999999999999999999987 67799999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 426 NDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 426 ~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
|+|+.||||.+|.+.+.|.|-+|||||.|....|++|++..
T Consensus 552 ~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~ 592 (941)
T KOG0351|consen 552 PDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYA 592 (941)
T ss_pred CceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchh
Confidence 99999999999999999999999999999999999999987
No 78
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.5e-33 Score=270.49 Aligned_cols=329 Identities=22% Similarity=0.285 Sum_probs=239.9
Q ss_pred HHHHHHHHC-CCCC-CcHHHHHHHHHHh-cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeC
Q 008207 119 PLREKLKSK-GIES-LFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195 (574)
Q Consensus 119 ~l~~~l~~~-g~~~-~~~~Q~~~i~~il-~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~P 195 (574)
.+.++|++. |+.. -++.|.+++..+. .++||.|+.|||+||+++|.||.|.. .+ -.||++|
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~--~g--------------ITIV~SP 69 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH--GG--------------ITIVISP 69 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh--CC--------------eEEEehH
Confidence 456677654 6654 4799999998877 45799999999999999999999832 21 3799999
Q ss_pred cHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHh------cCCCcEEEEChHHHHHh----HhcCCccCCCceEE
Q 008207 196 TRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL------KKGIDVVIGTPGRIKDH----IERGNIDLSSLKFR 265 (574)
Q Consensus 196 treLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l------~~~~~IlV~Tp~~l~~~----l~~~~~~l~~~~~l 265 (574)
..+|.....+.+..+- +.+..+....+.....+.+ +....+++-||+....- +.++..+-..+.|+
T Consensus 70 LiALIkDQiDHL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~ 145 (641)
T KOG0352|consen 70 LIALIKDQIDHLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYI 145 (641)
T ss_pred HHHHHHHHHHHHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeE
Confidence 9999998888887653 4444444444443333222 34578999999875322 12222334558999
Q ss_pred EecCchhhhcCC--cHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhccc-CCeEEEEecCcccccccceeEEEE
Q 008207 266 VLDEADEMLRMG--FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKS-DKKTIDLVGNEKMKASTNVRHIVL 342 (574)
Q Consensus 266 VlDEah~~l~~~--~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~i~~~~~ 342 (574)
|+||||+...|| |++++..+-......+....+.++||.+..+.+-.-.-++- .|..+. .++.--..+++
T Consensus 146 vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiF-------kTP~FR~NLFY 218 (641)
T KOG0352|consen 146 VVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIF-------KTPTFRDNLFY 218 (641)
T ss_pred EechhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhc-------cCcchhhhhhH
Confidence 999999999998 88888776554444456789999999999887665544422 222221 11111111111
Q ss_pred eCC----chhhhhhhhHHHH-hhc-----------CCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHH
Q 008207 343 PCS----SSARSQVIPDIIR-CYS-----------SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTL 402 (574)
Q Consensus 343 ~~~----~~~~~~~l~~ll~-~~~-----------~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~ 402 (574)
... -.+....|.++-. .+. ..|..||||.|++.++.++-.|. .+..+|+++...+|..+.
T Consensus 219 D~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQ 298 (641)
T KOG0352|consen 219 DNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQ 298 (641)
T ss_pred HHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHH
Confidence 110 1122223333321 111 23578999999999999999887 567899999999999999
Q ss_pred HHHhCCCccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHH
Q 008207 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIE 474 (574)
Q Consensus 403 ~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~ 474 (574)
+.|.+++..|++||..+++|+|-|+|++|||+++|.|...|.|-+|||||.|....|-++|+.. ...+..+.
T Consensus 299 e~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 299 EKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred HHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987 55555443
No 79
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.1e-32 Score=290.00 Aligned_cols=329 Identities=18% Similarity=0.301 Sum_probs=246.3
Q ss_pred HCCCCCCcHHHHHHHHHHh-cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHH
Q 008207 126 SKGIESLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (574)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~il-~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (574)
-.+|..+..+|..++|.+. .+.++|+|||||||||-.|+|.|+..+....... .-.....+++||+|+++||..+.
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~---~i~k~~fKiVYIaPmKALa~Em~ 181 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQG---DIAKDDFKIVYIAPMKALAAEMV 181 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhcccc---ccccCCceEEEEechHHHHHHHH
Confidence 4578899999999999987 5789999999999999999999999998632211 11235668999999999999999
Q ss_pred HHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCc----cCCCceEEEecCchhhhcCCcHH
Q 008207 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI----DLSSLKFRVLDEADEMLRMGFVE 280 (574)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~----~l~~~~~lVlDEah~~l~~~~~~ 280 (574)
+.|.+-....|+.|..++|++...... -..++|+|+||+.+ |.+.|... .++.+++|||||+|.+ ....+.
T Consensus 182 ~~~~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlL-hd~RGp 256 (1230)
T KOG0952|consen 182 DKFSKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLL-HDDRGP 256 (1230)
T ss_pred HHHhhhcccccceEEEecCcchhhHHH---HHhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhh-cCcccc
Confidence 999876677899999999998776554 23499999999998 66655322 3577999999999955 566677
Q ss_pred HHHHHHHhcc-----CccCceEEEEeccCchhHHHHHHHhcccC-CeEEEEecCcccccccceeEEEEeCCch---hhh-
Q 008207 281 DVELILGKVE-----DANKVQTLLFSATLPSWVKHISTKFLKSD-KKTIDLVGNEKMKASTNVRHIVLPCSSS---ARS- 350 (574)
Q Consensus 281 ~~~~il~~l~-----~~~~~q~ll~SAT~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~i~~~~~~~~~~---~~~- 350 (574)
.++.|+..+. .....+++++|||+|+.. ++ ..|++.+ +.-+... +....+..+.+.++-+... ...
T Consensus 257 vlEtiVaRtlr~vessqs~IRivgLSATlPN~e-Dv-A~fL~vn~~~glfsF--d~~yRPvpL~~~~iG~k~~~~~~~~~ 332 (1230)
T KOG0952|consen 257 VLETIVARTLRLVESSQSMIRIVGLSATLPNYE-DV-ARFLRVNPYAGLFSF--DQRYRPVPLTQGFIGIKGKKNRQQKK 332 (1230)
T ss_pred hHHHHHHHHHHHHHhhhhheEEEEeeccCCCHH-HH-HHHhcCCCccceeee--cccccccceeeeEEeeecccchhhhh
Confidence 7888776654 123689999999999843 33 3445333 2222111 1123334455555544333 111
Q ss_pred ----hhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC---------------------------CCccccccCCHHHHH
Q 008207 351 ----QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---------------------------GARALHGDIQQSQRE 399 (574)
Q Consensus 351 ----~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~---------------------------~~~~lh~~~~~~~r~ 399 (574)
.....++.....+.+++|||.++..+.+.++.|. +.+.+|++|.-.+|.
T Consensus 333 ~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~ 412 (1230)
T KOG0952|consen 333 NIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQ 412 (1230)
T ss_pred hHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHH
Confidence 1233445556688999999999988877777663 567899999999999
Q ss_pred HHHHHHhCCCccEEEEeccccccCCCCCCcEEE----EeCCCC------CHhHHHHHhcccccC--CCcceEEEEECCC
Q 008207 400 VTLAGFRSGKFMTLVATNVAARGLDINDVQLII----QCEPPR------DVEAYIHRSGRTGRA--GNTGVAVMLYDPR 466 (574)
Q Consensus 400 ~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI----~~d~p~------s~~~yiqr~GR~gR~--g~~G~~i~l~~~~ 466 (574)
.+...|..|.++||+||..++.|+|+|+--.+| .||.-. ..-+-+|..|||||- +..|.++.+-+.+
T Consensus 413 l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~d 491 (1230)
T KOG0952|consen 413 LVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRD 491 (1230)
T ss_pred HHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEeccc
Confidence 999999999999999999999999999766555 244332 466789999999996 4579998888876
No 80
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=4.3e-31 Score=292.68 Aligned_cols=355 Identities=17% Similarity=0.178 Sum_probs=228.9
Q ss_pred CCcHHHHHHHHHHhc--CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHH
Q 008207 131 SLFPIQAMTFDMVLD--GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (574)
Q Consensus 131 ~~~~~Q~~~i~~il~--~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~ 208 (574)
.|.|+|..++..++. ...+|+...+|.|||+.+.+.+.+.+..+.. -++|||||+ .|..||..++.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~-----------~rvLIVvP~-sL~~QW~~El~ 219 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRA-----------ERVLILVPE-TLQHQWLVEML 219 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCC-----------CcEEEEcCH-HHHHHHHHHHH
Confidence 589999999877764 3479999999999999887777666554422 259999998 89999999996
Q ss_pred HhhCCCCceEEEEeCCcchHHHH---HHhcCCCcEEEEChHHHHHhHhc-CCccCCCceEEEecCchhhhcC--CcHHHH
Q 008207 209 VYGGAVGLTSCCLYGGAPYHAQE---FKLKKGIDVVIGTPGRIKDHIER-GNIDLSSLKFRVLDEADEMLRM--GFVEDV 282 (574)
Q Consensus 209 ~~~~~~~~~~~~~~gg~~~~~~~---~~l~~~~~IlV~Tp~~l~~~l~~-~~~~l~~~~~lVlDEah~~l~~--~~~~~~ 282 (574)
+.+ ++....+.++ ...... .......+++|+|.+.+...-.. ..+.-..+++|||||||++-.. .-...+
T Consensus 220 ~kF---~l~~~i~~~~-~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y 295 (956)
T PRK04914 220 RRF---NLRFSLFDEE-RYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREY 295 (956)
T ss_pred HHh---CCCeEEEcCc-chhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHH
Confidence 543 2333333222 211110 01123468999999988652111 1122346899999999998521 111112
Q ss_pred HHHHHhccCccCceEEEEeccCch-------------------hHHHH-------------HHHhcccCC----------
Q 008207 283 ELILGKVEDANKVQTLLFSATLPS-------------------WVKHI-------------STKFLKSDK---------- 320 (574)
Q Consensus 283 ~~il~~l~~~~~~q~ll~SAT~~~-------------------~~~~~-------------~~~~~~~~~---------- 320 (574)
. .+..+... ...++++|||.-. ....+ ...++...+
T Consensus 296 ~-~v~~La~~-~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~ 373 (956)
T PRK04914 296 Q-VVEQLAEV-IPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALG 373 (956)
T ss_pred H-HHHHHhhc-cCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHH
Confidence 2 22222211 2468999999310 00000 000010000
Q ss_pred ------e---------------------------------EEEEecCc--c-cccccceeEEEEeCC-------------
Q 008207 321 ------K---------------------------------TIDLVGNE--K-MKASTNVRHIVLPCS------------- 345 (574)
Q Consensus 321 ------~---------------------------------~i~~~~~~--~-~~~~~~i~~~~~~~~------------- 345 (574)
. .+-+.+.. . ......+..+.+..+
T Consensus 374 ~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~ 453 (956)
T PRK04914 374 ELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEA 453 (956)
T ss_pred HHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHH
Confidence 0 00000000 0 000001111111110
Q ss_pred -----------------------chhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC-----CCccccccCCHHH
Q 008207 346 -----------------------SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQ 397 (574)
Q Consensus 346 -----------------------~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~-----~~~~lh~~~~~~~ 397 (574)
...|...|..+++.. .+.++||||+++..+..|...|. .+..+||+|++.+
T Consensus 454 ~~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~e 532 (956)
T PRK04914 454 RARDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIE 532 (956)
T ss_pred HHHhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHH
Confidence 112344556666554 46799999999999999999994 4667999999999
Q ss_pred HHHHHHHHhCC--CccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHH
Q 008207 398 REVTLAGFRSG--KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIE 474 (574)
Q Consensus 398 r~~~~~~F~~g--~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~ 474 (574)
|.++++.|+++ .++|||||+++++|+|++.+++|||||+|+++..|+||+||+||.|+.|.+..++... ...-..|.
T Consensus 533 R~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~ 612 (956)
T PRK04914 533 RDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLF 612 (956)
T ss_pred HHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHH
Confidence 99999999984 6999999999999999999999999999999999999999999999999875555443 44455566
Q ss_pred HHhC--CcceecCCCCHHHHHHHHHHHHHHHH
Q 008207 475 RESG--VKFEHISAPQPADIAKAAGVEAAETI 504 (574)
Q Consensus 475 ~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~ 504 (574)
+.+. ..+-+...|+...+.......+...+
T Consensus 613 ~~~~~~l~ife~~~~~~~~v~~~~~~~l~~~l 644 (956)
T PRK04914 613 RWYHEGLNAFEHTCPTGRALYDEFGDELIPYL 644 (956)
T ss_pred HHHhhhcCceeccCCCHHHHHHHHHHHHHHHH
Confidence 6544 46677888888888776665555554
No 81
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.9e-33 Score=287.64 Aligned_cols=308 Identities=20% Similarity=0.264 Sum_probs=238.6
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHH
Q 008207 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (574)
.++-|+|..+|..+-++..|+|.|.|.+|||.++-++|...+...+ |+++.+|-++|.+|-++++..
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ-------------RVIYTSPIKALSNQKYREl~~ 194 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ-------------RVIYTSPIKALSNQKYRELLE 194 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcC-------------eEEeeChhhhhcchhHHHHHH
Confidence 4788999999999999999999999999999999999998887654 599999999999999999975
Q ss_pred hhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHhc
Q 008207 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289 (574)
Q Consensus 210 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l 289 (574)
-+.. |+.++|+.+.. ..+..+|+|.+.|..++.+|.-.++.+.|||+||+|+|-|...+-.|+.-+-.+
T Consensus 195 EF~D----VGLMTGDVTIn-------P~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIll 263 (1041)
T KOG0948|consen 195 EFKD----VGLMTGDVTIN-------PDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILL 263 (1041)
T ss_pred Hhcc----cceeecceeeC-------CCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEec
Confidence 5444 45677776654 347899999999999999999999999999999999998876666666666667
Q ss_pred cCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCc---------h--hhhh----h--
Q 008207 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS---------S--ARSQ----V-- 352 (574)
Q Consensus 290 ~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~---------~--~~~~----~-- 352 (574)
|. +.+.+++|||+|+.. +++.....-+.....+...+ ..++.++|+.++... . -+.+ .
T Consensus 264 P~--~vr~VFLSATiPNA~-qFAeWI~~ihkQPcHVVYTd--yRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~ 338 (1041)
T KOG0948|consen 264 PD--NVRFVFLSATIPNAR-QFAEWICHIHKQPCHVVYTD--YRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMS 338 (1041)
T ss_pred cc--cceEEEEeccCCCHH-HHHHHHHHHhcCCceEEeec--CCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHH
Confidence 77 789999999999854 34443332222222222222 344566676554321 0 0001 1
Q ss_pred --------------------------------hhHHHHhh--cCCCeEEEEecChHHHHHHHHhCC--------------
Q 008207 353 --------------------------------IPDIIRCY--SSGGRTIIFTETKESASQLADLLP-------------- 384 (574)
Q Consensus 353 --------------------------------l~~ll~~~--~~~~~~lVF~~t~~~~~~l~~~l~-------------- 384 (574)
+..+++.. ....++|||+-++++|+.++-.+.
T Consensus 339 ~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~ 418 (1041)
T KOG0948|consen 339 VLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVE 418 (1041)
T ss_pred HhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHH
Confidence 11111110 123589999999999998887762
Q ss_pred -----------------------------CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEE--
Q 008207 385 -----------------------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ-- 433 (574)
Q Consensus 385 -----------------------------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~-- 433 (574)
+++++||++-+--++-+.-.|.+|-+++|+||..++.|||+|.-++|+.
T Consensus 419 ~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~ 498 (1041)
T KOG0948|consen 419 TIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAV 498 (1041)
T ss_pred HHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeec
Confidence 6889999999999999999999999999999999999999998777763
Q ss_pred --eCCC----CCHhHHHHHhcccccCCC--cceEEEEECCC
Q 008207 434 --CEPP----RDVEAYIHRSGRTGRAGN--TGVAVMLYDPR 466 (574)
Q Consensus 434 --~d~p----~s~~~yiqr~GR~gR~g~--~G~~i~l~~~~ 466 (574)
||-- -+.-.|+|++|||||.|. .|.||++++..
T Consensus 499 rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 499 RKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred cccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 3321 256789999999999996 79999999976
No 82
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=4e-31 Score=289.50 Aligned_cols=305 Identities=22% Similarity=0.261 Sum_probs=208.7
Q ss_pred CCCcHHHHHHHHHHhcC---CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHH
Q 008207 130 ESLFPIQAMTFDMVLDG---SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il~~---~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (574)
..|++.|.++++.+..+ +++++.|+||||||.+|+.++.+.+..+ .++||++||++|+.|+.+.
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g-------------~~vLvLvPt~~L~~Q~~~~ 209 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQG-------------KQALVLVPEIALTPQMLAR 209 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcC-------------CeEEEEeCcHHHHHHHHHH
Confidence 36899999999999874 8899999999999999999888777643 2599999999999999999
Q ss_pred HHHhhCCCCceEEEEeCCcchHHHHH----HhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCC---c-
Q 008207 207 FDVYGGAVGLTSCCLYGGAPYHAQEF----KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG---F- 278 (574)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~----~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~---~- 278 (574)
++... +..+..++|+.+...... .....++|+|+|++.+. ..++++++||+||+|.....+ .
T Consensus 210 l~~~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~ 279 (679)
T PRK05580 210 FRARF---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPR 279 (679)
T ss_pred HHHHh---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCC
Confidence 98653 467888999887654432 23456899999999874 357889999999999764222 1
Q ss_pred --HHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeC--Cc---hhh-h
Q 008207 279 --VEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC--SS---SAR-S 350 (574)
Q Consensus 279 --~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~--~~---~~~-~ 350 (574)
..++...... . .+.+++++|||.+......+. ......+.+...........+....... .. ... .
T Consensus 280 y~~r~va~~ra~-~--~~~~~il~SATps~~s~~~~~---~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~ 353 (679)
T PRK05580 280 YHARDLAVVRAK-L--ENIPVVLGSATPSLESLANAQ---QGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSP 353 (679)
T ss_pred CcHHHHHHHHhh-c--cCCCEEEEcCCCCHHHHHHHh---ccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCH
Confidence 1222222222 2 267999999998755443332 1223333333221111111221111100 00 001 1
Q ss_pred hhhhHHHHhhcCCCeEEEEecChH--------------------------------------------------------
Q 008207 351 QVIPDIIRCYSSGGRTIIFTETKE-------------------------------------------------------- 374 (574)
Q Consensus 351 ~~l~~ll~~~~~~~~~lVF~~t~~-------------------------------------------------------- 374 (574)
.++..+-+....+.++|||+|++.
T Consensus 354 ~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~ 433 (679)
T PRK05580 354 PLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLV 433 (679)
T ss_pred HHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeE
Confidence 222333334456678999887532
Q ss_pred --------HHHHHHHhCC--CCccccccCCH--HHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEe--CCCCC-
Q 008207 375 --------SASQLADLLP--GARALHGDIQQ--SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQC--EPPRD- 439 (574)
Q Consensus 375 --------~~~~l~~~l~--~~~~lh~~~~~--~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~--d~p~s- 439 (574)
..+.|...|. .+..+|+++.+ .+++.+++.|++|+.+|||+|+++++|+|+|+|++|+.+ |.+.+
T Consensus 434 ~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~ 513 (679)
T PRK05580 434 PVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFS 513 (679)
T ss_pred EeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccC
Confidence 1233333333 45678999874 578999999999999999999999999999999999644 54432
Q ss_pred ---------HhHHHHHhcccccCCCcceEEEEE
Q 008207 440 ---------VEAYIHRSGRTGRAGNTGVAVMLY 463 (574)
Q Consensus 440 ---------~~~yiqr~GR~gR~g~~G~~i~l~ 463 (574)
.+.|+|++||+||.+..|.++...
T Consensus 514 pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT 546 (679)
T PRK05580 514 PDFRASERTFQLLTQVAGRAGRAEKPGEVLIQT 546 (679)
T ss_pred CccchHHHHHHHHHHHHhhccCCCCCCEEEEEe
Confidence 367999999999999999998654
No 83
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=7.2e-32 Score=290.82 Aligned_cols=323 Identities=21% Similarity=0.298 Sum_probs=226.7
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHH
Q 008207 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (574)
Q Consensus 128 g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~ 207 (574)
|. .|+++|...--.+..| -|+.++||+|||++|.+|++..+..+. .++|++||++||.|.++++
T Consensus 80 g~-~~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~G~-------------~V~VvTpn~yLA~qd~e~m 143 (896)
T PRK13104 80 GL-RHFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAISGR-------------GVHIVTVNDYLAKRDSQWM 143 (896)
T ss_pred CC-CcchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhcCC-------------CEEEEcCCHHHHHHHHHHH
Confidence 44 6777776655555444 488999999999999999997776542 3899999999999999999
Q ss_pred HHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHH-HHhHhcC-CccC-----CCceEEEecCchhhhc-----
Q 008207 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG-NIDL-----SSLKFRVLDEADEMLR----- 275 (574)
Q Consensus 208 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~~-~~~l-----~~~~~lVlDEah~~l~----- 275 (574)
..+...+|+++.+++||.+...+.... .+||+|+||++| .|++..+ .+.+ +.+.++||||||.||=
T Consensus 144 ~~l~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArt 221 (896)
T PRK13104 144 KPIYEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEART 221 (896)
T ss_pred HHHhcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCC
Confidence 999999999999999998877665544 589999999999 8998776 3334 5899999999999871
Q ss_pred -----------CCcHHHHHHHHHhccCc------------cCceEEEEeccCchhHHH----------------------
Q 008207 276 -----------MGFVEDVELILGKVEDA------------NKVQTLLFSATLPSWVKH---------------------- 310 (574)
Q Consensus 276 -----------~~~~~~~~~il~~l~~~------------~~~q~ll~SAT~~~~~~~---------------------- 310 (574)
..++..+..+...+... .+.+.+.+|-.--..+..
T Consensus 222 PLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~ 301 (896)
T PRK13104 222 PLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIML 301 (896)
T ss_pred ceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhH
Confidence 01333344444433321 012233333321001111
Q ss_pred ------HH--HHhcccCCeEEE------EecCcc----------------------------------------------
Q 008207 311 ------IS--TKFLKSDKKTID------LVGNEK---------------------------------------------- 330 (574)
Q Consensus 311 ------~~--~~~~~~~~~~i~------~~~~~~---------------------------------------------- 330 (574)
.. ..++..+..+|. +++...
T Consensus 302 ~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~k 381 (896)
T PRK13104 302 MHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNK 381 (896)
T ss_pred HHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcch
Confidence 00 111112211111 111000
Q ss_pred --------------cccccceeEEE---------------EeCCchhhhh-hhhHHHHhhcCCCeEEEEecChHHHHHHH
Q 008207 331 --------------MKASTNVRHIV---------------LPCSSSARSQ-VIPDIIRCYSSGGRTIIFTETKESASQLA 380 (574)
Q Consensus 331 --------------~~~~~~i~~~~---------------~~~~~~~~~~-~l~~ll~~~~~~~~~lVF~~t~~~~~~l~ 380 (574)
.....++.... +......|.. ++..+...+..+.|+||||+|++.++.|+
T Consensus 382 LsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls 461 (896)
T PRK13104 382 LSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLS 461 (896)
T ss_pred hccCCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHH
Confidence 00001111111 1112233333 44555566778999999999999999999
Q ss_pred HhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCC------------------------------
Q 008207 381 DLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN------------------------------ 426 (574)
Q Consensus 381 ~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~------------------------------ 426 (574)
.+|. ...++|+++.+.+|..+.++|+.| .|+||||+|+||+||.
T Consensus 462 ~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (896)
T PRK13104 462 QLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQK 539 (896)
T ss_pred HHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhh
Confidence 9997 567899999999999999999999 5999999999999987
Q ss_pred --------CCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCCchHH
Q 008207 427 --------DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 470 (574)
Q Consensus 427 --------~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~~~~~ 470 (574)
+==|||-...+.|..---|-.||+||.|.+|.+-+|++-.+..+
T Consensus 540 ~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~ 591 (896)
T PRK13104 540 RHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLM 591 (896)
T ss_pred hhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 22379999999999999999999999999999988888764443
No 84
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=8.6e-31 Score=281.78 Aligned_cols=149 Identities=23% Similarity=0.330 Sum_probs=133.7
Q ss_pred ccccCCCHHHHHHHH-----HCCCCCC---cHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccC
Q 008207 111 VSRFRISVPLREKLK-----SKGIESL---FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKT 182 (574)
Q Consensus 111 ~~~~~l~~~l~~~l~-----~~g~~~~---~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~ 182 (574)
.+.|++..++.+.+. ..||..| +|+|.++++.++.++++|+.++||+|||++|++|++..+..+.
T Consensus 64 ~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~------- 136 (970)
T PRK12899 64 PEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK------- 136 (970)
T ss_pred HHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC-------
Confidence 457889999988877 6899999 9999999999999999999999999999999999998876432
Q ss_pred CCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHH-HHhHhcCCccCC-
Q 008207 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERGNIDLS- 260 (574)
Q Consensus 183 ~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~~~~~l~- 260 (574)
.++||+||++||.|+++.+..++.+.++++.+++||.+...+...+ ++||+|||||+| .+++..+.+.++
T Consensus 137 ------~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~ 208 (970)
T PRK12899 137 ------PVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRK 208 (970)
T ss_pred ------CeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCH
Confidence 2799999999999999999999999999999999999998887665 599999999999 999988766665
Q ss_pred ------CceEEEecCchhhh
Q 008207 261 ------SLKFRVLDEADEML 274 (574)
Q Consensus 261 ------~~~~lVlDEah~~l 274 (574)
.+.++||||||.|+
T Consensus 209 ~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 209 EEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred HHhhcccccEEEEechhhhh
Confidence 46899999999987
No 85
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.98 E-value=2.5e-31 Score=253.03 Aligned_cols=334 Identities=20% Similarity=0.289 Sum_probs=252.7
Q ss_pred CcccccCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 008207 109 NAVSRFRISVPLREKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (574)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (574)
+.-++|+++.+....|+. ......+|.|..+|...+.|.|+++..|||.||+++|.+|++- ..
T Consensus 71 wdkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~--ad-------------- 134 (695)
T KOG0353|consen 71 WDKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC--AD-------------- 134 (695)
T ss_pred cccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh--cC--------------
Confidence 444689999999888865 4778899999999999999999999999999999999999872 22
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHH---HHH---hcCCCcEEEEChHHHHHh---Hhc--CC
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ---EFK---LKKGIDVVIGTPGRIKDH---IER--GN 256 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~---l~~~~~IlV~Tp~~l~~~---l~~--~~ 256 (574)
..+||+||...|+....-.++.++ +....+....+.... ... ......+++.||+.+... +.+ ..
T Consensus 135 g~alvi~plislmedqil~lkqlg----i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka 210 (695)
T KOG0353|consen 135 GFALVICPLISLMEDQILQLKQLG----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKA 210 (695)
T ss_pred CceEeechhHHHHHHHHHHHHHhC----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHH
Confidence 248999999999987777777765 444434333332211 111 124578999999988432 211 33
Q ss_pred ccCCCceEEEecCchhhhcCC--cHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccc
Q 008207 257 IDLSSLKFRVLDEADEMLRMG--FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAS 334 (574)
Q Consensus 257 ~~l~~~~~lVlDEah~~l~~~--~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 334 (574)
+....+..+-+||+|+...|| |+.++..+--.-...+...++.++||.+..+..-++..+... ....+... ...
T Consensus 211 ~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie-~~~tf~a~---fnr 286 (695)
T KOG0353|consen 211 LEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIE-AAFTFRAG---FNR 286 (695)
T ss_pred hhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHH-hhheeecc---cCC
Confidence 456678999999999999988 777765432211222357899999999998888777776322 22222111 222
Q ss_pred cceeEEEEe--CCchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCC
Q 008207 335 TNVRHIVLP--CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408 (574)
Q Consensus 335 ~~i~~~~~~--~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g 408 (574)
+++...+.. -+..+..+-+..+++....+...||||-++..++.++..|. .+..+|+.|.+.+|.-+-+.|..|
T Consensus 287 ~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~ 366 (695)
T KOG0353|consen 287 PNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAG 366 (695)
T ss_pred CCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCcccccccccccccc
Confidence 333333322 22334445555566555577889999999999999999997 577899999999999999999999
Q ss_pred CccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHH-------------------------------------------
Q 008207 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIH------------------------------------------- 445 (574)
Q Consensus 409 ~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiq------------------------------------------- 445 (574)
++.|+|||-++++|||-|+|++|||..+|.|.+.|.|
T Consensus 367 eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsek 446 (695)
T KOG0353|consen 367 EIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEK 446 (695)
T ss_pred ceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecch
Confidence 9999999999999999999999999999999999999
Q ss_pred HhcccccCCCcceEEEEECCC
Q 008207 446 RSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 446 r~GR~gR~g~~G~~i~l~~~~ 466 (574)
-.||+||.+.+..|+++|.-.
T Consensus 447 esgragrd~~~a~cilyy~~~ 467 (695)
T KOG0353|consen 447 ESGRAGRDDMKADCILYYGFA 467 (695)
T ss_pred hccccccCCCcccEEEEechH
Confidence 789999999999999998744
No 86
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.98 E-value=9e-31 Score=247.78 Aligned_cols=200 Identities=43% Similarity=0.675 Sum_probs=181.8
Q ss_pred ccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeE
Q 008207 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSV 190 (574)
Q Consensus 111 ~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~ 190 (574)
|+++++++.+.+.|.+.|+..|+++|.++++.+.+|+|+++++|||+|||++|++|+++.+..... ..++++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~--------~~~~~v 72 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPK--------KDGPQA 72 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcc--------cCCceE
Confidence 678999999999999999999999999999999999999999999999999999999999877531 235689
Q ss_pred EEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCc
Q 008207 191 LVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270 (574)
Q Consensus 191 Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEa 270 (574)
+|++||++|+.|+...+..+....++.+..++|+.........+..+++|+|+||++|.+++.++...+.+++++|+||+
T Consensus 73 iii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~ 152 (203)
T cd00268 73 LILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEA 152 (203)
T ss_pred EEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeCh
Confidence 99999999999999999999888889999999999887777777778999999999999999988888999999999999
Q ss_pred hhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCe
Q 008207 271 DEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321 (574)
Q Consensus 271 h~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~ 321 (574)
|.+.+.++...+..++..++. .+|++++|||+++.+..+...++. ++.
T Consensus 153 h~~~~~~~~~~~~~~~~~l~~--~~~~~~~SAT~~~~~~~~~~~~~~-~~~ 200 (203)
T cd00268 153 DRMLDMGFEDQIREILKLLPK--DRQTLLFSATMPKEVRDLARKFLR-NPV 200 (203)
T ss_pred HHhhccChHHHHHHHHHhCCc--ccEEEEEeccCCHHHHHHHHHHCC-CCE
Confidence 999989999999999999876 789999999999999999888883 443
No 87
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.98 E-value=5.2e-31 Score=276.22 Aligned_cols=310 Identities=22% Similarity=0.269 Sum_probs=233.9
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHH
Q 008207 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (574)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (574)
..| .|-.+|+++|-++..|..|+|.|+|.+|||+++-++|...-.+ ..|++|.+|-++|.+|-++.
T Consensus 294 ~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h-------------~TR~iYTSPIKALSNQKfRD 359 (1248)
T KOG0947|consen 294 YPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKH-------------MTRTIYTSPIKALSNQKFRD 359 (1248)
T ss_pred CCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhh-------------ccceEecchhhhhccchHHH
Confidence 344 7889999999999999999999999999999877766544333 23599999999999999999
Q ss_pred HHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHH
Q 008207 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286 (574)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il 286 (574)
|+.-+...| .++|+.... ....++|+|.+.|..++.++.--++++.+||+||+|++-|...+-.++.++
T Consensus 360 Fk~tF~Dvg----LlTGDvqin-------PeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEVi 428 (1248)
T KOG0947|consen 360 FKETFGDVG----LLTGDVQIN-------PEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVI 428 (1248)
T ss_pred HHHhccccc----eeecceeeC-------CCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeee
Confidence 986655444 677876544 448999999999999999998779999999999999998888788888999
Q ss_pred HhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCc--------------------
Q 008207 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS-------------------- 346 (574)
Q Consensus 287 ~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-------------------- 346 (574)
-++|. ..++|++|||.|+.. +++...-+...+.|.++... ..+-.+.|+++.-.+
T Consensus 429 IMlP~--HV~~IlLSATVPN~~-EFA~WIGRtK~K~IyViST~--kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~ 503 (1248)
T KOG0947|consen 429 IMLPR--HVNFILLSATVPNTL-EFADWIGRTKQKTIYVISTS--KRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAK 503 (1248)
T ss_pred eeccc--cceEEEEeccCCChH-HHHHHhhhccCceEEEEecC--CCccceEEEEEeccceehhhcccchhhhhcchhhh
Confidence 89988 899999999999755 33333332233333333221 111122222111000
Q ss_pred -------------------------------------------hhhh--hhhhHHHHhhc--CCCeEEEEecChHHHHHH
Q 008207 347 -------------------------------------------SARS--QVIPDIIRCYS--SGGRTIIFTETKESASQL 379 (574)
Q Consensus 347 -------------------------------------------~~~~--~~l~~ll~~~~--~~~~~lVF~~t~~~~~~l 379 (574)
..+. ....+++.... .--|+||||-+++.|+..
T Consensus 504 ~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~ 583 (1248)
T KOG0947|consen 504 DSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEY 583 (1248)
T ss_pred hhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHH
Confidence 0000 12233333221 234899999999999998
Q ss_pred HHhCC-------------------------------------------CCccccccCCHHHHHHHHHHHhCCCccEEEEe
Q 008207 380 ADLLP-------------------------------------------GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416 (574)
Q Consensus 380 ~~~l~-------------------------------------------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT 416 (574)
++.|. +++++||++-+--+.-+.-.|..|-++||+||
T Consensus 584 a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFAT 663 (1248)
T KOG0947|consen 584 ADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFAT 663 (1248)
T ss_pred HHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeeh
Confidence 88872 67889999999999999999999999999999
Q ss_pred ccccccCCCCCCcEEEEeC--------CCCCHhHHHHHhcccccCCC--cceEEEEECCC
Q 008207 417 NVAARGLDINDVQLIIQCE--------PPRDVEAYIHRSGRTGRAGN--TGVAVMLYDPR 466 (574)
Q Consensus 417 d~~~~Gldi~~v~~VI~~d--------~p~s~~~yiqr~GR~gR~g~--~G~~i~l~~~~ 466 (574)
..+|+|+|+|.-.+|+.-= .-..+-.|.|++|||||.|- .|+++++....
T Consensus 664 ETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 664 ETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred hhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 9999999999877776311 12367899999999999985 78888877644
No 88
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.1e-29 Score=273.96 Aligned_cols=319 Identities=20% Similarity=0.245 Sum_probs=229.0
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHH
Q 008207 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (574)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (574)
.|+ .|+++|.-+.-.+..|+ |+.++||+|||+++.+|++-....+. .+-|++||+.||.|.+++
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~-------------~V~IvTpn~yLA~rd~e~ 141 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTGK-------------GVHVVTVNDYLAKRDAEW 141 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcCC-------------CEEEEecCHHHHHHHHHH
Confidence 355 78899987776666664 99999999999999999964333332 267999999999999999
Q ss_pred HHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHH-HHhHhcCC------ccCCCceEEEecCchhhh-----
Q 008207 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERGN------IDLSSLKFRVLDEADEML----- 274 (574)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~~~------~~l~~~~~lVlDEah~~l----- 274 (574)
+..+...+|+++++++|+.+...+.... .+||+++||++| .|++..+. ..++.+.++||||||.||
T Consensus 142 ~~~l~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeAr 219 (830)
T PRK12904 142 MGPLYEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEAR 219 (830)
T ss_pred HHHHHhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCC
Confidence 9999999999999999999887766664 499999999999 88887643 347789999999999986
Q ss_pred -----------cCCcHHHHHHHHHhccCc------cCceEEEEe------------------------------------
Q 008207 275 -----------RMGFVEDVELILGKVEDA------NKVQTLLFS------------------------------------ 301 (574)
Q Consensus 275 -----------~~~~~~~~~~il~~l~~~------~~~q~ll~S------------------------------------ 301 (574)
...++..+..+...+... .+.+.+.+|
T Consensus 220 tpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~ 299 (830)
T PRK12904 220 TPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHE 299 (830)
T ss_pred CceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHH
Confidence 111344444555544221 011222222
Q ss_pred -------------------------------------------------------------------------ccCchhH
Q 008207 302 -------------------------------------------------------------------------ATLPSWV 308 (574)
Q Consensus 302 -------------------------------------------------------------------------AT~~~~~ 308 (574)
+|.....
T Consensus 300 l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~ 379 (830)
T PRK12904 300 LFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEA 379 (830)
T ss_pred HHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHH
Confidence 2222211
Q ss_pred HHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhhhhhhhHHHHh-hcCCCeEEEEecChHHHHHHHHhCC---
Q 008207 309 KHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC-YSSGGRTIIFTETKESASQLADLLP--- 384 (574)
Q Consensus 309 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~lVF~~t~~~~~~l~~~l~--- 384 (574)
..+...|- -.++.+... .+........ .+......|...+...+.. +..+.++||||+|++.++.|+..|.
T Consensus 380 ~E~~~iY~---l~vv~IPtn-kp~~r~d~~d-~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~g 454 (830)
T PRK12904 380 EEFREIYN---LDVVVIPTN-RPMIRIDHPD-LIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAG 454 (830)
T ss_pred HHHHHHhC---CCEEEcCCC-CCeeeeeCCC-eEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 11111110 001111100 0000001111 1223345566666666643 4577899999999999999999997
Q ss_pred -CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCC-----------------------------------
Q 008207 385 -GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV----------------------------------- 428 (574)
Q Consensus 385 -~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v----------------------------------- 428 (574)
....+||. +.+|+..+..|+.+...|+||||+|+||+||+--
T Consensus 455 i~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 532 (830)
T PRK12904 455 IPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLE 532 (830)
T ss_pred CceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHH
Confidence 55678885 7899999999999999999999999999999742
Q ss_pred ---cEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCCchHH
Q 008207 429 ---QLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 470 (574)
Q Consensus 429 ---~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~~~~~ 470 (574)
=|||-...|.|..---|-.||+||.|.+|.+-+|++-.+..+
T Consensus 533 ~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l~ 577 (830)
T PRK12904 533 AGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLM 577 (830)
T ss_pred cCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHHH
Confidence 389999999999999999999999999999998888764444
No 89
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=3e-29 Score=276.48 Aligned_cols=311 Identities=21% Similarity=0.217 Sum_probs=206.1
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHH
Q 008207 129 IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (574)
Q Consensus 129 ~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~ 208 (574)
...|+|+|..+........-+|+.||||+|||.++++++...+..+ ...+++|.+||+++++|+++.+.
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~-----------~~~gi~~aLPT~Atan~m~~Rl~ 352 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQG-----------LADSIIFALPTQATANAMLSRLE 352 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-----------CCCeEEEECcHHHHHHHHHHHHH
Confidence 3489999998865544567799999999999999877666444332 12359999999999999999987
Q ss_pred HhhCC--CCceEEEEeCCcchHHHH---------------------HHhc---C---CCcEEEEChHHHHHhHhcC-Ccc
Q 008207 209 VYGGA--VGLTSCCLYGGAPYHAQE---------------------FKLK---K---GIDVVIGTPGRIKDHIERG-NID 258 (574)
Q Consensus 209 ~~~~~--~~~~~~~~~gg~~~~~~~---------------------~~l~---~---~~~IlV~Tp~~l~~~l~~~-~~~ 258 (574)
.+... ....+...+|........ ..+. + -.+|+|||...++..+... ...
T Consensus 353 ~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~ 432 (878)
T PRK09694 353 ALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRF 432 (878)
T ss_pred HHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHH
Confidence 54321 134566677665422110 1111 1 1689999999998654432 222
Q ss_pred CCC----ceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHH-HHHhccc-------CCeEEEEe
Q 008207 259 LSS----LKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHI-STKFLKS-------DKKTIDLV 326 (574)
Q Consensus 259 l~~----~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~-~~~~~~~-------~~~~i~~~ 326 (574)
++. -++|||||+|.+ +.-....+..++..+... ...+|+||||+|...... ...|-.. .+..+...
T Consensus 433 lR~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~-g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~ 510 (878)
T PRK09694 433 IRGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQA-GGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWR 510 (878)
T ss_pred HHHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccc
Confidence 222 258999999987 443344556666655432 467999999999876543 3333110 01111110
Q ss_pred cCc---cccccc-----ceeE-EEE-eC--Cc-hhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC-------CC
Q 008207 327 GNE---KMKAST-----NVRH-IVL-PC--SS-SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP-------GA 386 (574)
Q Consensus 327 ~~~---~~~~~~-----~i~~-~~~-~~--~~-~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~-------~~ 386 (574)
... ...... ...+ +.+ .. .. .....++..++.....++++||||||++.++.++..|+ .+
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v 590 (878)
T PRK09694 511 GVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDI 590 (878)
T ss_pred ccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceE
Confidence 000 000000 0001 111 00 11 11234455566655678899999999999999998886 36
Q ss_pred ccccccCCHHHH----HHHHHHH-hCCC---ccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCC
Q 008207 387 RALHGDIQQSQR----EVTLAGF-RSGK---FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN 455 (574)
Q Consensus 387 ~~lh~~~~~~~r----~~~~~~F-~~g~---~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~ 455 (574)
..+||.+++.+| .++++.| ++|+ ..|||||+++++|||| +++++|....| .+.|+||+||+||.++
T Consensus 591 ~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 591 DLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 789999999999 4678888 6666 4799999999999999 58999998888 6799999999999875
No 90
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.5e-29 Score=259.21 Aligned_cols=303 Identities=19% Similarity=0.268 Sum_probs=215.5
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHH-Hh
Q 008207 132 LFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD-VY 210 (574)
Q Consensus 132 ~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~-~~ 210 (574)
.+.+-.+.+..+.+++-+|+.|+||||||...-..+.+.-. ....++.+..|+|--|.-++.... ..
T Consensus 52 I~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~------------~~~g~I~~TQPRRVAavslA~RVAeE~ 119 (674)
T KOG0922|consen 52 IYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGF------------ASSGKIACTQPRRVAAVSLAKRVAEEM 119 (674)
T ss_pred HHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhccc------------ccCCcEEeecCchHHHHHHHHHHHHHh
Confidence 34455678888889999999999999999953333332222 222348899999966666655442 22
Q ss_pred hCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcH-HHHHHHHHhc
Q 008207 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV-EDVELILGKV 289 (574)
Q Consensus 211 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~-~~~~~il~~l 289 (574)
+...|-.|+.... ........+.|.+.|.|.|++.+..+. .|+++++|||||||+- ... +-+--+++.+
T Consensus 120 ~~~lG~~VGY~IR------Fed~ts~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHER---sl~TDiLlGlLKki 189 (674)
T KOG0922|consen 120 GCQLGEEVGYTIR------FEDSTSKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHER---SLHTDILLGLLKKI 189 (674)
T ss_pred CCCcCceeeeEEE------ecccCCCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhh---hhHHHHHHHHHHHH
Confidence 2222222222211 112223358899999999999998776 4999999999999963 222 2222333322
Q ss_pred -cCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhh-hhhhhHHHH--hhcCCCe
Q 008207 290 -EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR-SQVIPDIIR--CYSSGGR 365 (574)
Q Consensus 290 -~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~l~~ll~--~~~~~~~ 365 (574)
...+..++|++|||+.. .....|+ ....++.+.+.. ..++.+|...+..+- ...+..+++ ...+.+.
T Consensus 190 ~~~R~~LklIimSATlda---~kfS~yF-~~a~i~~i~GR~-----fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GD 260 (674)
T KOG0922|consen 190 LKKRPDLKLIIMSATLDA---EKFSEYF-NNAPILTIPGRT-----FPVEILYLKEPTADYVDAALITVIQIHLTEPPGD 260 (674)
T ss_pred HhcCCCceEEEEeeeecH---HHHHHHh-cCCceEeecCCC-----CceeEEeccCCchhhHHHHHHHHHHHHccCCCCC
Confidence 23336799999999986 4556666 456777766653 344555554433332 233333333 2257789
Q ss_pred EEEEecChHHHHHHHHhCC--------C----CccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEE
Q 008207 366 TIIFTETKESASQLADLLP--------G----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ 433 (574)
Q Consensus 366 ~lVF~~t~~~~~~l~~~l~--------~----~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~ 433 (574)
+|||.+.+++++.+++.|. . +.++||.|+..++.++++.-..|..+|++||++++..|.|+++.+||+
T Consensus 261 ILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVD 340 (674)
T KOG0922|consen 261 ILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVD 340 (674)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEc
Confidence 9999999999999998886 1 357999999999999999998999999999999999999999999997
Q ss_pred eC------------------CCCCHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 434 CE------------------PPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 434 ~d------------------~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
.+ .|-|..+-.||+|||||.| +|.||.+|+..
T Consensus 341 sG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~ 390 (674)
T KOG0922|consen 341 SGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTES 390 (674)
T ss_pred CCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHH
Confidence 55 3568899999999999996 99999999965
No 91
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=4.8e-29 Score=271.99 Aligned_cols=316 Identities=20% Similarity=0.265 Sum_probs=236.0
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHH
Q 008207 125 KSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (574)
Q Consensus 125 ~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (574)
...+| .|.++|++++..+..|..|+++||||||||.+.-.++...+..+. ++++++|.++|.+|.+
T Consensus 114 ~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~q-------------rviYTsPIKALsNQKy 179 (1041)
T COG4581 114 REYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQ-------------RVIYTSPIKALSNQKY 179 (1041)
T ss_pred HhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCC-------------ceEeccchhhhhhhHH
Confidence 44566 899999999999999999999999999999998888888887664 3899999999999999
Q ss_pred HHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHH
Q 008207 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284 (574)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~ 284 (574)
++|........-.++.++|+.+++ .++.|+|+|.+.|.+++.++...+..+.+||+||+|.|-+...+..++.
T Consensus 180 rdl~~~fgdv~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE 252 (1041)
T COG4581 180 RDLLAKFGDVADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEE 252 (1041)
T ss_pred HHHHHHhhhhhhhccceecceeeC-------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHH
Confidence 998644322223356677776654 4589999999999999999999999999999999999999888888999
Q ss_pred HHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeC-------Cchhh------hh
Q 008207 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC-------SSSAR------SQ 351 (574)
Q Consensus 285 il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~-------~~~~~------~~ 351 (574)
++-.+|. ..++++||||+|+.. ++...+-......+.++... ..+..+.++++.- ....+ ..
T Consensus 253 ~Ii~lP~--~v~~v~LSATv~N~~-EF~~Wi~~~~~~~~~vv~t~--~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~ 327 (1041)
T COG4581 253 VIILLPD--HVRFVFLSATVPNAE-EFAEWIQRVHSQPIHVVSTE--HRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPS 327 (1041)
T ss_pred HHHhcCC--CCcEEEEeCCCCCHH-HHHHHHHhccCCCeEEEeec--CCCCCeEEEEecCCceeeeecccccchhhcchh
Confidence 9999988 789999999998754 22222221122222222222 1122233322211 00000 00
Q ss_pred hhhH--------------------------------------HHHhh--cCCCeEEEEecChHHHHHHHHhCC-------
Q 008207 352 VIPD--------------------------------------IIRCY--SSGGRTIIFTETKESASQLADLLP------- 384 (574)
Q Consensus 352 ~l~~--------------------------------------ll~~~--~~~~~~lVF~~t~~~~~~l~~~l~------- 384 (574)
+... +++.. ...-++|+|+-++..|+..+..+.
T Consensus 328 a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~ 407 (1041)
T COG4581 328 ANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLT 407 (1041)
T ss_pred hhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccC
Confidence 0000 11110 133589999999999977666552
Q ss_pred --------------------------------------CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCC
Q 008207 385 --------------------------------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426 (574)
Q Consensus 385 --------------------------------------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~ 426 (574)
+++++|++|-+..|..+...|..|-++|++||.+++.|+|+|
T Consensus 408 ~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmP 487 (1041)
T COG4581 408 EEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMP 487 (1041)
T ss_pred CcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCc
Confidence 456799999999999999999999999999999999999999
Q ss_pred CCcEEE----EeC----CCCCHhHHHHHhcccccCCC--cceEEEEECCC
Q 008207 427 DVQLII----QCE----PPRDVEAYIHRSGRTGRAGN--TGVAVMLYDPR 466 (574)
Q Consensus 427 ~v~~VI----~~d----~p~s~~~yiqr~GR~gR~g~--~G~~i~l~~~~ 466 (574)
.-++|+ .+| .+-++..|.|+.|||||.|. .|.++++-.+.
T Consensus 488 artvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 488 ARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred ccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 877666 222 45579999999999999996 68888875544
No 92
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.9e-29 Score=255.67 Aligned_cols=365 Identities=18% Similarity=0.197 Sum_probs=249.1
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHH
Q 008207 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (574)
Q Consensus 128 g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~ 207 (574)
.....+++-.+.+.++..++-+|+.|.||||||...-..+.+.-.. ..+-++-+..|.|--|..|+...
T Consensus 262 ksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGyt-----------k~gk~IgcTQPRRVAAmSVAaRV 330 (902)
T KOG0923|consen 262 KSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYT-----------KGGKKIGCTQPRRVAAMSVAARV 330 (902)
T ss_pred hcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccc-----------cCCceEeecCcchHHHHHHHHHH
Confidence 4556678888899999999999999999999999533333322221 12234788999998887776554
Q ss_pred H-----HhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhh-cCC-cHH
Q 008207 208 D-----VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML-RMG-FVE 280 (574)
Q Consensus 208 ~-----~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l-~~~-~~~ 280 (574)
. ++|..+|+.+- ...-....+-|-++|.|+|+..+.... +|.+++++||||||+-. ... ...
T Consensus 331 A~EMgvkLG~eVGYsIR----------FEdcTSekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAHERTL~TDILfg 399 (902)
T KOG0923|consen 331 AEEMGVKLGHEVGYSIR----------FEDCTSEKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAHERTLHTDILFG 399 (902)
T ss_pred HHHhCcccccccceEEE----------eccccCcceeeeeecchhHHHHHhccc-cccceeEEEeehhhhhhhhhhHHHH
Confidence 3 34444444432 122223457899999999999887654 79999999999999742 111 233
Q ss_pred HHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhhhh-hhhHHHHh
Q 008207 281 DVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ-VIPDIIRC 359 (574)
Q Consensus 281 ~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~l~~ll~~ 359 (574)
.+..|...-| .+++++.|||+.. .-...|+ .+..+..+.+.. ..+.-+|..++..+-.+ ++..+++.
T Consensus 400 LvKDIar~Rp---dLKllIsSAT~DA---ekFS~fF-DdapIF~iPGRR-----yPVdi~Yt~~PEAdYldAai~tVlqI 467 (902)
T KOG0923|consen 400 LVKDIARFRP---DLKLLISSATMDA---EKFSAFF-DDAPIFRIPGRR-----YPVDIFYTKAPEADYLDAAIVTVLQI 467 (902)
T ss_pred HHHHHHhhCC---cceEEeeccccCH---HHHHHhc-cCCcEEeccCcc-----cceeeecccCCchhHHHHHHhhheee
Confidence 3444444443 6899999999986 3445666 455555555432 34555666666554443 33444432
Q ss_pred --hcCCCeEEEEecChHHHHHHHHhCC-------------CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCC
Q 008207 360 --YSSGGRTIIFTETKESASQLADLLP-------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLD 424 (574)
Q Consensus 360 --~~~~~~~lVF~~t~~~~~~l~~~l~-------------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gld 424 (574)
..+.+.+|||...+++.+.....|. -+.++|+.+++..+.++++.-.+|..+|++||++|...|.
T Consensus 468 H~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlT 547 (902)
T KOG0923|consen 468 HLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLT 547 (902)
T ss_pred EeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhcee
Confidence 2477899999999999887776664 3568999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeC------------------CCCCHhHHHHHhcccccCCCcceEEEEECCCchHHHHHHHHhCCcceecCC
Q 008207 425 INDVQLIIQCE------------------PPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSKIERESGVKFEHISA 486 (574)
Q Consensus 425 i~~v~~VI~~d------------------~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~~~~~~~i~~~~~~~~~~~~~ 486 (574)
|++|.+||+-+ .|-|..+-.||+|||||.| +|.||.||+.. .+.+.+|...--+|.+.++
T Consensus 548 IdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~-aY~~eLE~~t~PEIqRtnL 625 (902)
T KOG0923|consen 548 IDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW-AYEHELEEMTVPEIQRTNL 625 (902)
T ss_pred ecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh-hhhhhhccCCCcceeeccc
Confidence 99999999755 3557888999999999997 99999999964 2334555544344444444
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHhccCC
Q 008207 487 PQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGL 528 (574)
Q Consensus 487 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 528 (574)
...--.+++.+..-+-...-++++-.+....+.+.|...|.+
T Consensus 626 ~nvVL~LkSLGI~Dl~~FdFmDpPp~etL~~aLE~LyaLGAL 667 (902)
T KOG0923|consen 626 GNVVLLLKSLGIHDLIHFDFLDPPPTETLLKALEQLYALGAL 667 (902)
T ss_pred hhHHHHHHhcCcchhcccccCCCCChHHHHHHHHHHHHhhcc
Confidence 443333333333222223334555555555655555555433
No 93
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=4.1e-29 Score=268.42 Aligned_cols=325 Identities=19% Similarity=0.269 Sum_probs=222.0
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHH
Q 008207 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (574)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (574)
.|+ .|+++|.-+.-.+..|+ |+...||+|||+++.+|++.....+.. +-|++||.-||.|-++.
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~~-------------v~vvT~neyLA~Rd~e~ 140 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGKG-------------VHVVTVNEYLSSRDATE 140 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCCC-------------eEEEeccHHHHHhhHHH
Confidence 354 88999988776666666 999999999999999999888877653 89999999999999999
Q ss_pred HHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHH-HhHhc------CCccCCCceEEEecCchhhhc----
Q 008207 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIK-DHIER------GNIDLSSLKFRVLDEADEMLR---- 275 (574)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~-~~l~~------~~~~l~~~~~lVlDEah~~l~---- 275 (574)
+..+...+|++++++.|+.+....... ..+||+++|...|- |+|.. .....+.+.+.||||+|.||=
T Consensus 141 ~~~~~~~LGl~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDear 218 (796)
T PRK12906 141 MGELYRWLGLTVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEAR 218 (796)
T ss_pred HHHHHHhcCCeEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCC
Confidence 999999999999999998776544333 35899999998873 33322 112346789999999999760
Q ss_pred -----------C-CcHHHHHHHHHhccCc-----------------cCceEEEEecc---------------------Cc
Q 008207 276 -----------M-GFVEDVELILGKVEDA-----------------NKVQTLLFSAT---------------------LP 305 (574)
Q Consensus 276 -----------~-~~~~~~~~il~~l~~~-----------------~~~q~ll~SAT---------------------~~ 305 (574)
+ .++..+..+...+... ...+.+.++.. +.
T Consensus 219 tPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~ 298 (796)
T PRK12906 219 TPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALA 298 (796)
T ss_pred CceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHH
Confidence 0 1223333333332210 01112222211 01
Q ss_pred hhHHHHHHH--hcccCCeEE------EEecCcc-----------------------------------------------
Q 008207 306 SWVKHISTK--FLKSDKKTI------DLVGNEK----------------------------------------------- 330 (574)
Q Consensus 306 ~~~~~~~~~--~~~~~~~~i------~~~~~~~----------------------------------------------- 330 (574)
.++.....- ++..+..++ .+++...
T Consensus 299 ~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl 378 (796)
T PRK12906 299 HHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKL 378 (796)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchh
Confidence 111111111 111111111 0110000
Q ss_pred -------------cccccceeEE---------------EEeCCchhhhhhhhHHH-HhhcCCCeEEEEecChHHHHHHHH
Q 008207 331 -------------MKASTNVRHI---------------VLPCSSSARSQVIPDII-RCYSSGGRTIIFTETKESASQLAD 381 (574)
Q Consensus 331 -------------~~~~~~i~~~---------------~~~~~~~~~~~~l~~ll-~~~~~~~~~lVF~~t~~~~~~l~~ 381 (574)
.....++... .+......+...+...+ ..+..+.++||||+|+..++.++.
T Consensus 379 ~GmTGTa~~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~ 458 (796)
T PRK12906 379 SGMTGTAKTEEEEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSH 458 (796)
T ss_pred hccCCCCHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHH
Confidence 0000001111 11222344555555555 345678999999999999999999
Q ss_pred hCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCC---CCc-----EEEEeCCCCCHhHHHHHhcc
Q 008207 382 LLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN---DVQ-----LIIQCEPPRDVEAYIHRSGR 449 (574)
Q Consensus 382 ~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~---~v~-----~VI~~d~p~s~~~yiqr~GR 449 (574)
.|. ....+||++.+.++..+.++++.|. |+|||++|+||+||+ +|. |||++++|.|...|.||.||
T Consensus 459 ~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GR 536 (796)
T PRK12906 459 LLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGR 536 (796)
T ss_pred HHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhh
Confidence 997 5678999998887788877777775 999999999999994 899 99999999999999999999
Q ss_pred cccCCCcceEEEEECCCchHHH
Q 008207 450 TGRAGNTGVAVMLYDPRKSSVS 471 (574)
Q Consensus 450 ~gR~g~~G~~i~l~~~~~~~~~ 471 (574)
|||.|.+|.+.+|++..+..++
T Consensus 537 tGRqG~~G~s~~~~sleD~l~~ 558 (796)
T PRK12906 537 SGRQGDPGSSRFYLSLEDDLMR 558 (796)
T ss_pred hccCCCCcceEEEEeccchHHH
Confidence 9999999999999998744443
No 94
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=6.4e-29 Score=262.77 Aligned_cols=287 Identities=24% Similarity=0.319 Sum_probs=191.0
Q ss_pred EEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHH
Q 008207 150 VGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229 (574)
Q Consensus 150 i~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~ 229 (574)
++.|+||||||.+|+..+...+..+ .++||++|+++|+.|+++.|+..+ +..+..++|+.+...
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g-------------~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~e 64 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALG-------------KSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSE 64 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcC-------------CeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHH
Confidence 4689999999999987766665443 259999999999999999998653 356778888876543
Q ss_pred HH----HHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCC---c---HHHHHHHHHhccCccCceEEE
Q 008207 230 QE----FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG---F---VEDVELILGKVEDANKVQTLL 299 (574)
Q Consensus 230 ~~----~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~---~---~~~~~~il~~l~~~~~~q~ll 299 (574)
.. .......+|+|+|+..+. ..+.++++|||||+|...-.+ . ..++........ +.++++
T Consensus 65 r~~~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~---~~~vil 134 (505)
T TIGR00595 65 KLQAWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKF---NCPVVL 134 (505)
T ss_pred HHHHHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhc---CCCEEE
Confidence 32 223356899999999874 357889999999999765322 1 122333333332 578999
Q ss_pred EeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchh----h-hhhhhHHHHhhcCCCeEEEEecChH
Q 008207 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA----R-SQVIPDIIRCYSSGGRTIIFTETKE 374 (574)
Q Consensus 300 ~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~----~-~~~l~~ll~~~~~~~~~lVF~~t~~ 374 (574)
+|||.+.+....+ .......+.+...........+.. +...... . ..++..+.+....++++|||+|++.
T Consensus 135 ~SATPsles~~~~---~~g~~~~~~l~~r~~~~~~p~v~v--id~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrG 209 (505)
T TIGR00595 135 GSATPSLESYHNA---KQKAYRLLVLTRRVSGRKPPEVKL--IDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRG 209 (505)
T ss_pred EeCCCCHHHHHHH---hcCCeEEeechhhhcCCCCCeEEE--EecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCc
Confidence 9999665433222 112222232222111111111211 1111111 1 1233344445557789999987654
Q ss_pred H----------------------------------------------------------------HHHHHHhCC--CCcc
Q 008207 375 S----------------------------------------------------------------ASQLADLLP--GARA 388 (574)
Q Consensus 375 ~----------------------------------------------------------------~~~l~~~l~--~~~~ 388 (574)
. .+.|...|. .+..
T Consensus 210 ya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~ 289 (505)
T TIGR00595 210 YSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIAR 289 (505)
T ss_pred CCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEE
Confidence 2 233444444 5667
Q ss_pred ccccCCHHHH--HHHHHHHhCCCccEEEEeccccccCCCCCCcEEE--EeCC----CC------CHhHHHHHhcccccCC
Q 008207 389 LHGDIQQSQR--EVTLAGFRSGKFMTLVATNVAARGLDINDVQLII--QCEP----PR------DVEAYIHRSGRTGRAG 454 (574)
Q Consensus 389 lh~~~~~~~r--~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI--~~d~----p~------s~~~yiqr~GR~gR~g 454 (574)
+|+++++..+ ..+++.|++|+.+|||+|+++++|+|+|+|++|+ ++|. |. ..+.|+|++||+||.+
T Consensus 290 ~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~ 369 (505)
T TIGR00595 290 IDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAE 369 (505)
T ss_pred EecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCC
Confidence 8999987766 8999999999999999999999999999999985 5664 32 2568999999999999
Q ss_pred CcceEEE-EECCCc
Q 008207 455 NTGVAVM-LYDPRK 467 (574)
Q Consensus 455 ~~G~~i~-l~~~~~ 467 (574)
..|.+++ .+.|+.
T Consensus 370 ~~g~viiqt~~p~~ 383 (505)
T TIGR00595 370 DPGQVIIQTYNPNH 383 (505)
T ss_pred CCCEEEEEeCCCCC
Confidence 9998874 445543
No 95
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=4e-29 Score=271.22 Aligned_cols=304 Identities=21% Similarity=0.281 Sum_probs=221.1
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHH-Hh
Q 008207 132 LFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD-VY 210 (574)
Q Consensus 132 ~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~-~~ 210 (574)
.+....+.+.++.+++-+|++|+||||||...-..+++.... .+..+.++-|.|--|..+++.+. .+
T Consensus 51 v~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~------------~~g~I~~tQPRRlAArsvA~RvAeel 118 (845)
T COG1643 51 VTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG------------IAGKIGCTQPRRLAARSVAERVAEEL 118 (845)
T ss_pred cHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc------------cCCeEEecCchHHHHHHHHHHHHHHh
Confidence 355667788888899999999999999999766666655432 22358899999977777776663 44
Q ss_pred hCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhh-cCCc-HHHHHHHHHh
Q 008207 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML-RMGF-VEDVELILGK 288 (574)
Q Consensus 211 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l-~~~~-~~~~~~il~~ 288 (574)
+...|-.|+...-. .......+.|-++|.|.|+..+.++.+ |+.+++||+||||+-. +..| ..-+..++..
T Consensus 119 ~~~~G~~VGY~iRf------e~~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~ 191 (845)
T COG1643 119 GEKLGETVGYSIRF------ESKVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLAR 191 (845)
T ss_pred CCCcCceeeEEEEe------eccCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhh
Confidence 44434333332222 222345689999999999999998775 9999999999999743 1111 1122333444
Q ss_pred ccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCC-chh-hhhhhhHHHHhh--cCCC
Q 008207 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS-SSA-RSQVIPDIIRCY--SSGG 364 (574)
Q Consensus 289 l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~-~~~~l~~ll~~~--~~~~ 364 (574)
.+. ..++|+||||+.. +-...|+ .+..++.+.+.. ..++..|.... ... ....+...+... ...|
T Consensus 192 rr~--DLKiIimSATld~---~rfs~~f-~~apvi~i~GR~-----fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~G 260 (845)
T COG1643 192 RRD--DLKLIIMSATLDA---ERFSAYF-GNAPVIEIEGRT-----YPVEIRYLPEAEADYILLDAIVAAVDIHLREGSG 260 (845)
T ss_pred cCC--CceEEEEecccCH---HHHHHHc-CCCCEEEecCCc-----cceEEEecCCCCcchhHHHHHHHHHHHhccCCCC
Confidence 443 5899999999987 3345566 467777776654 33444443322 222 334444444332 3578
Q ss_pred eEEEEecChHHHHHHHHhCC--------CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEeCC
Q 008207 365 RTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEP 436 (574)
Q Consensus 365 ~~lVF~~t~~~~~~l~~~l~--------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~ 436 (574)
.+|||.+...+.+.+++.|. .+.++||.|+..++.++++.-..|+.+|++||++|+.+|.|++|.+||+.+.
T Consensus 261 dILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ 340 (845)
T COG1643 261 SILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGL 340 (845)
T ss_pred CEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCc
Confidence 99999999999998887776 3568999999999999998888888889999999999999999999997663
Q ss_pred ------------------CCCHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 437 ------------------PRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 437 ------------------p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
|-|.++..||.|||||.+ +|.||.+|+..
T Consensus 341 ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~ 387 (845)
T COG1643 341 AKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEE 387 (845)
T ss_pred ccccccccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHH
Confidence 457889999999999995 99999999964
No 96
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=9.8e-29 Score=265.13 Aligned_cols=336 Identities=20% Similarity=0.290 Sum_probs=245.4
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEe
Q 008207 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDG-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194 (574)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~-~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~ 194 (574)
++.+-..++ .|..++.++|..+.+..+.+ .++++|||||+|||..+++-+++.+.++.... +.......++.+++
T Consensus 296 lP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~d--gs~nl~~fKIVYIA 371 (1674)
T KOG0951|consen 296 LPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLRED--GSVNLAPFKIVYIA 371 (1674)
T ss_pred Ccchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccc--cceecccceEEEEe
Confidence 455544443 36677999999999998865 57999999999999999999999998765421 11223445899999
Q ss_pred CcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCcc---CCCceEEEecCch
Q 008207 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNID---LSSLKFRVLDEAD 271 (574)
Q Consensus 195 PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~---l~~~~~lVlDEah 271 (574)
|...|++.|...|.+.....|++|.-.+|+.....+. -.+++|+||||+.+ |.+.++.-+ .+-++.+|+||.|
T Consensus 372 PmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIH 447 (1674)
T KOG0951|consen 372 PMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIH 447 (1674)
T ss_pred eHHHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhh
Confidence 9999999999999888888999999999987654332 23489999999998 777765333 3458999999999
Q ss_pred hhhcCCcHHHHHHHHHhccCc-----cCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCc
Q 008207 272 EMLRMGFVEDVELILGKVEDA-----NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (574)
Q Consensus 272 ~~l~~~~~~~~~~il~~l~~~-----~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 346 (574)
.+ ....+..++.|....... ..++.+++|||+|+... ...|+..++.-+...+. ...+..+.|-++.+..
T Consensus 448 LL-hDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~D--V~~Fl~v~~~glf~fd~--syRpvPL~qq~Igi~e 522 (1674)
T KOG0951|consen 448 LL-HDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYED--VASFLRVDPEGLFYFDS--SYRPVPLKQQYIGITE 522 (1674)
T ss_pred hc-ccccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhh--hHHHhccCcccccccCc--ccCcCCccceEecccc
Confidence 55 445566676666544322 26799999999998432 33344344433333222 2445566676766554
Q ss_pred hhhhh--------hhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----------------------------------
Q 008207 347 SARSQ--------VIPDIIRCYSSGGRTIIFTETKESASQLADLLP---------------------------------- 384 (574)
Q Consensus 347 ~~~~~--------~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~---------------------------------- 384 (574)
..... ....++... ..+++|||+.++++..+.++.++
T Consensus 523 k~~~~~~qamNe~~yeKVm~~a-gk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~d 601 (1674)
T KOG0951|consen 523 KKPLKRFQAMNEACYEKVLEHA-GKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPD 601 (1674)
T ss_pred CCchHHHHHHHHHHHHHHHHhC-CCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChh
Confidence 33221 223334444 44899999999987655444431
Q ss_pred -------CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEE----EeCC------CCCHhHHHHHh
Q 008207 385 -------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLII----QCEP------PRDVEAYIHRS 447 (574)
Q Consensus 385 -------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI----~~d~------p~s~~~yiqr~ 447 (574)
+++++|++|+..+|..+.+.|++|.++|||+|-.+++|+|+|+-+++| -||+ +.++.+-+||.
T Consensus 602 LkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qml 681 (1674)
T KOG0951|consen 602 LKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQML 681 (1674)
T ss_pred HHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHH
Confidence 567899999999999999999999999999999999999999888777 3553 46899999999
Q ss_pred cccccCCC--cceEEEEECC
Q 008207 448 GRTGRAGN--TGVAVMLYDP 465 (574)
Q Consensus 448 GR~gR~g~--~G~~i~l~~~ 465 (574)
||+||.+- .|..+..-+.
T Consensus 682 gragrp~~D~~gegiiit~~ 701 (1674)
T KOG0951|consen 682 GRAGRPQYDTCGEGIIITDH 701 (1674)
T ss_pred hhcCCCccCcCCceeeccCc
Confidence 99999864 3444444443
No 97
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=4.2e-28 Score=253.62 Aligned_cols=294 Identities=23% Similarity=0.258 Sum_probs=199.1
Q ss_pred CCCCcHHHHHHHHHHhc----CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHH
Q 008207 129 IESLFPIQAMTFDMVLD----GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (574)
Q Consensus 129 ~~~~~~~Q~~~i~~il~----~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (574)
...|+++|++++..+.. ++..++++|||+|||..++..+.... . .+|||+||++|+.||+
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~-~---------------~~Lvlv~~~~L~~Qw~ 97 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK-R---------------STLVLVPTKELLDQWA 97 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc-C---------------CEEEEECcHHHHHHHH
Confidence 44799999999999998 89999999999999998766554322 1 2899999999999999
Q ss_pred HHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHH
Q 008207 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284 (574)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~ 284 (574)
+.+..+.... -.+..+.|+. ... .. ..|.|+|...+...-....+....+.+||+||||++....+ ..
T Consensus 98 ~~~~~~~~~~-~~~g~~~~~~-~~~-----~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~----~~ 165 (442)
T COG1061 98 EALKKFLLLN-DEIGIYGGGE-KEL-----EP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSY----RR 165 (442)
T ss_pred HHHHHhcCCc-cccceecCce-ecc-----CC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHH----HH
Confidence 7776554321 1233333332 211 11 46999999999774211223344789999999999875543 33
Q ss_pred HHHhccCccCceEEEEeccCchhH-HHHHHHhcccCCeEEEEecCc----ccccccceeEEEE-----------------
Q 008207 285 ILGKVEDANKVQTLLFSATLPSWV-KHISTKFLKSDKKTIDLVGNE----KMKASTNVRHIVL----------------- 342 (574)
Q Consensus 285 il~~l~~~~~~q~ll~SAT~~~~~-~~~~~~~~~~~~~~i~~~~~~----~~~~~~~i~~~~~----------------- 342 (574)
+...+.. ....++||||++... ......+....+......... ....+..+..+..
T Consensus 166 ~~~~~~~--~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~ 243 (442)
T COG1061 166 ILELLSA--AYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARF 243 (442)
T ss_pred HHHhhhc--ccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhh
Confidence 4444433 112899999976322 111111111112222211110 0011111111111
Q ss_pred -------------------eCCchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCCC---CccccccCCHHHHHH
Q 008207 343 -------------------PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG---ARALHGDIQQSQREV 400 (574)
Q Consensus 343 -------------------~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~---~~~lh~~~~~~~r~~ 400 (574)
......+...+..++..+..+.+++||+.+...+..++..|.. +..+.|..+..+|..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~~ 323 (442)
T COG1061 244 RELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREA 323 (442)
T ss_pred hhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCceEEEECCCCHHHHHH
Confidence 0011122223333333332467999999999999999999973 358999999999999
Q ss_pred HHHHHhCCCccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhccccc
Q 008207 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452 (574)
Q Consensus 401 ~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR 452 (574)
+++.|+.|.+++|+++.++..|+|+|+++++|...+..|...|+||+||.-|
T Consensus 324 il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 324 ILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred HHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 9999999999999999999999999999999999999999999999999999
No 98
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=3.1e-28 Score=261.96 Aligned_cols=323 Identities=22% Similarity=0.283 Sum_probs=222.4
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHH
Q 008207 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (574)
Q Consensus 128 g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~ 207 (574)
|+ .|+++|...--.+.. --|+.++||+|||++|.+|++.....+.. |.||+|+++||.|.++++
T Consensus 80 gm-~~ydVQliGgl~L~~--G~IaEm~TGEGKTL~a~lp~~l~al~g~~-------------VhIvT~ndyLA~RD~e~m 143 (908)
T PRK13107 80 EM-RHFDVQLLGGMVLDS--NRIAEMRTGEGKTLTATLPAYLNALTGKG-------------VHVITVNDYLARRDAENN 143 (908)
T ss_pred CC-CcCchHHhcchHhcC--CccccccCCCCchHHHHHHHHHHHhcCCC-------------EEEEeCCHHHHHHHHHHH
Confidence 44 677888655444444 45889999999999999999987776543 999999999999999999
Q ss_pred HHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHH-HHhHhcC-Ccc-----CCCceEEEecCchhhhcC----
Q 008207 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG-NID-----LSSLKFRVLDEADEMLRM---- 276 (574)
Q Consensus 208 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~~-~~~-----l~~~~~lVlDEah~~l~~---- 276 (574)
..+..++|+++.++.++.+.. .+.-...+||+++||++| .|+|..+ .+. .+.+.++||||||.|+-.
T Consensus 144 ~~l~~~lGlsv~~i~~~~~~~--~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArt 221 (908)
T PRK13107 144 RPLFEFLGLTVGINVAGLGQQ--EKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEART 221 (908)
T ss_pred HHHHHhcCCeEEEecCCCCHH--HHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCC
Confidence 999999999999999998863 333344699999999999 8887665 223 377999999999998621
Q ss_pred ------------CcHHHHHHHHHhccCc-----------------cCceEEEEecc--------C---------------
Q 008207 277 ------------GFVEDVELILGKVEDA-----------------NKVQTLLFSAT--------L--------------- 304 (574)
Q Consensus 277 ------------~~~~~~~~il~~l~~~-----------------~~~q~ll~SAT--------~--------------- 304 (574)
.++..+..+...+... .+.+.+-||-. +
T Consensus 222 PLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~ 301 (908)
T PRK13107 222 PLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSA 301 (908)
T ss_pred ceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCc
Confidence 1233333333322210 01122222211 0
Q ss_pred -----chhHHHHHH--HhcccCCeEEE------EecCcc-----------------------------------------
Q 008207 305 -----PSWVKHIST--KFLKSDKKTID------LVGNEK----------------------------------------- 330 (574)
Q Consensus 305 -----~~~~~~~~~--~~~~~~~~~i~------~~~~~~----------------------------------------- 330 (574)
..++....+ .++..+..++. +++...
T Consensus 302 ~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfF 381 (908)
T PRK13107 302 ANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYF 381 (908)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHH
Confidence 001111111 01111111111 111000
Q ss_pred -------------------cccccceeE----------------EEEeCCchhhhhhhhHHHHhhcCCCeEEEEecChHH
Q 008207 331 -------------------MKASTNVRH----------------IVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKES 375 (574)
Q Consensus 331 -------------------~~~~~~i~~----------------~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~ 375 (574)
.....++.. .++......-..++..+...+..+.++||||+|.+.
T Consensus 382 r~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~ 461 (908)
T PRK13107 382 RQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQ 461 (908)
T ss_pred HhhhHhhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHH
Confidence 000001111 111111222234455566667789999999999999
Q ss_pred HHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCC-------------------------
Q 008207 376 ASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN------------------------- 426 (574)
Q Consensus 376 ~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~------------------------- 426 (574)
++.++.+|. ...++|+++++.++..+.+.|+.|. |+|||++|+||+||.
T Consensus 462 se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~ 539 (908)
T PRK13107 462 SELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKA 539 (908)
T ss_pred HHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHH
Confidence 999999997 5668999999999999999999997 999999999999997
Q ss_pred ------------CCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCCchHH
Q 008207 427 ------------DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 470 (574)
Q Consensus 427 ------------~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~~~~~ 470 (574)
+==|||-...+.|..---|-.||+||.|.+|.+.+|++-.+..+
T Consensus 540 ~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L~ 595 (908)
T PRK13107 540 DWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLM 595 (908)
T ss_pred HHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHHH
Confidence 22489999999999999999999999999999998888764433
No 99
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=2.9e-27 Score=245.17 Aligned_cols=321 Identities=23% Similarity=0.351 Sum_probs=240.1
Q ss_pred cCCCHHHHHHH-HHCCCCCCcHHHHHHHHHHhcC------CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCC
Q 008207 114 FRISVPLREKL-KSKGIESLFPIQAMTFDMVLDG------SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (574)
Q Consensus 114 ~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~il~~------~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (574)
++.+..+++.+ ..+.| +||..|..++..|... -+-+++|.-|||||+++++.++..+..+.
T Consensus 245 ~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~----------- 312 (677)
T COG1200 245 LPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGY----------- 312 (677)
T ss_pred CCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCC-----------
Confidence 34555666555 55666 9999999999999853 35789999999999999999999887653
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHH---Hhc-CCCcEEEEChHHHHHhHhcCCccCCCc
Q 008207 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF---KLK-KGIDVVIGTPGRIKDHIERGNIDLSSL 262 (574)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~-~~~~IlV~Tp~~l~~~l~~~~~~l~~~ 262 (574)
++...+||--||.|.++.+.+|....++++..++|...-..... .+. ...+|+|+|..-+ +....+.++
T Consensus 313 --Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi-----Qd~V~F~~L 385 (677)
T COG1200 313 --QAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI-----QDKVEFHNL 385 (677)
T ss_pred --eeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh-----hcceeecce
Confidence 59999999999999999999999999999999999876554433 333 4599999997555 446779999
Q ss_pred eEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEE
Q 008207 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (574)
Q Consensus 263 ~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 342 (574)
.++|+||=|+.. ..+-..+...-.. .+..++||||.=+....+.. |-.-+-..|+ +.+.-...+....+
T Consensus 386 gLVIiDEQHRFG----V~QR~~L~~KG~~--~Ph~LvMTATPIPRTLAlt~-fgDldvS~Id----ElP~GRkpI~T~~i 454 (677)
T COG1200 386 GLVIIDEQHRFG----VHQRLALREKGEQ--NPHVLVMTATPIPRTLALTA-FGDLDVSIID----ELPPGRKPITTVVI 454 (677)
T ss_pred eEEEEecccccc----HHHHHHHHHhCCC--CCcEEEEeCCCchHHHHHHH-hccccchhhc----cCCCCCCceEEEEe
Confidence 999999999863 2222223322221 36799999996553333222 1111222221 11122234444444
Q ss_pred eCCchhhhhhhhHHHHhhcCCCeEEEEecChHHHH--------HHHHhC----C--CCccccccCCHHHHHHHHHHHhCC
Q 008207 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESAS--------QLADLL----P--GARALHGDIQQSQREVTLAGFRSG 408 (574)
Q Consensus 343 ~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~--------~l~~~l----~--~~~~lh~~~~~~~r~~~~~~F~~g 408 (574)
. ...+..++..+......+.++.|.|+-.++.+ .++..| . .+..+||.|++.+++.++.+|++|
T Consensus 455 ~--~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~ 532 (677)
T COG1200 455 P--HERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEG 532 (677)
T ss_pred c--cccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcC
Confidence 3 35556666666666678899999999776543 333333 3 488999999999999999999999
Q ss_pred CccEEEEeccccccCCCCCCcEEEEeCCCC-CHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 409 KFMTLVATNVAARGLDINDVQLIIQCEPPR-DVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 409 ~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~-s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
+++|||||.+.+-|||+|+.++.|.++.-+ -.++.-|--||+||.+....|++++.+.
T Consensus 533 e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~ 591 (677)
T COG1200 533 EIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPP 591 (677)
T ss_pred CCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCC
Confidence 999999999999999999999998888765 4677788889999999999999999987
No 100
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.96 E-value=4.8e-27 Score=253.82 Aligned_cols=410 Identities=19% Similarity=0.226 Sum_probs=272.9
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcH
Q 008207 118 VPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197 (574)
Q Consensus 118 ~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr 197 (574)
....+.+....--..+..+...+..+.+++.++++|.||+|||......+++...... ...++++..|+|
T Consensus 160 ~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~----------~~~~IicTQPRR 229 (924)
T KOG0920|consen 160 ESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG----------AACNIICTQPRR 229 (924)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC----------CCCeEEecCCch
Confidence 3344444444444567888999999999999999999999999988888888775543 233589999999
Q ss_pred HHHHHHHHHHH-HhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhc-
Q 008207 198 ELAKQVHEDFD-VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR- 275 (574)
Q Consensus 198 eLa~Qv~~~~~-~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~- 275 (574)
--|.-+++.+. ..+...|-.|+...+..+ .....+.+++||.|.|++.+..+. .+.++.+||+||+|+-.-
T Consensus 230 IsAIsvAeRVa~ER~~~~g~~VGYqvrl~~------~~s~~t~L~fcTtGvLLr~L~~~~-~l~~vthiivDEVHER~i~ 302 (924)
T KOG0920|consen 230 ISAISVAERVAKERGESLGEEVGYQVRLES------KRSRETRLLFCTTGVLLRRLQSDP-TLSGVTHIIVDEVHERSIN 302 (924)
T ss_pred HHHHHHHHHHHHHhccccCCeeeEEEeeec------ccCCceeEEEecHHHHHHHhccCc-ccccCceeeeeeEEEccCC
Confidence 88888888774 334444544443333322 122348899999999999998744 689999999999997532
Q ss_pred CCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccc--------------cceeEEE
Q 008207 276 MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAS--------------TNVRHIV 341 (574)
Q Consensus 276 ~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------------~~i~~~~ 341 (574)
..|.-.+.+. .++..+.+++|+||||+.. +..+.|+ ....++.+.+....... ....+..
T Consensus 303 ~DflLi~lk~--lL~~~p~LkvILMSAT~da---e~fs~YF-~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~ 376 (924)
T KOG0920|consen 303 TDFLLILLKD--LLPRNPDLKVILMSATLDA---ELFSDYF-GGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARS 376 (924)
T ss_pred cccHHHHHHH--HhhhCCCceEEEeeeecch---HHHHHHh-CCCceEeecCCCcchHHHHHHHHHHHhccccccccccc
Confidence 2233222222 2333458999999999984 5667777 46777766654321100 0000110
Q ss_pred Ee------------CCchhhhhhhhHHHHhh---cCCCeEEEEecChHHHHHHHHhCC-----------CCccccccCCH
Q 008207 342 LP------------CSSSARSQVIPDIIRCY---SSGGRTIIFTETKESASQLADLLP-----------GARALHGDIQQ 395 (574)
Q Consensus 342 ~~------------~~~~~~~~~l~~ll~~~---~~~~~~lVF~~t~~~~~~l~~~l~-----------~~~~lh~~~~~ 395 (574)
.. ....-...++..++... ...+.+|||.++..++..+.+.|. .+.++|+.|+.
T Consensus 377 ~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s 456 (924)
T KOG0920|consen 377 GPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPS 456 (924)
T ss_pred ccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCCh
Confidence 00 00111233444444332 356899999999999999999885 24579999999
Q ss_pred HHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEeC--------CCC----------CHhHHHHHhcccccCCCcc
Q 008207 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCE--------PPR----------DVEAYIHRSGRTGRAGNTG 457 (574)
Q Consensus 396 ~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d--------~p~----------s~~~yiqr~GR~gR~g~~G 457 (574)
.+++.++.....|..+|++||++|+.+|.|++|-+||+.+ +-. |...-.||.|||||. ++|
T Consensus 457 ~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G 535 (924)
T KOG0920|consen 457 EEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPG 535 (924)
T ss_pred HHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCC
Confidence 9999999999999999999999999999999999999754 322 456778999999999 799
Q ss_pred eEEEEECCCchHHHHHHHHhC-CcceecCCCCHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHhccCCCHHHHHHH
Q 008207 458 VAVMLYDPRKSSVSKIERESG-VKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAK 536 (574)
Q Consensus 458 ~~i~l~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 536 (574)
.||.+|+... .++... ..+ .+|....+++..-.++-+...... +...++++- ++.+++..
T Consensus 536 ~cy~L~~~~~-----~~~~~~~~q~--------PEilR~pL~~l~L~iK~l~~~~~~---~fLskaldp---P~~~~v~~ 596 (924)
T KOG0920|consen 536 ICYHLYTRSR-----YEKLMLAYQL--------PEILRTPLEELCLHIKVLEQGSIK---AFLSKALDP---PPADAVDL 596 (924)
T ss_pred eeEEeechhh-----hhhcccccCC--------hHHHhChHHHhhheeeeccCCCHH---HHHHHhcCC---CChHHHHH
Confidence 9999999651 111111 222 334443344444344433333333 333334433 33444444
Q ss_pred HHHHhcccccccccCCCce---EEecCccccccccccc
Q 008207 537 ALAKAVVSAFLFSSSSNSL---SLTSGTMCFFRLTSEF 571 (574)
Q Consensus 537 ~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 571 (574)
|+..+. .-|.++..+.-| .+.+..|+++++.+.+
T Consensus 597 a~~~L~-~igaL~~~e~LT~LG~~la~lPvd~~igK~l 633 (924)
T KOG0920|consen 597 AIERLK-QIGALDESEELTPLGLHLASLPVDVRIGKLL 633 (924)
T ss_pred HHHHHH-HhccccCcccchHHHHHHHhCCCccccchhh
Confidence 443321 118888888777 8888899999987653
No 101
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.95 E-value=4.5e-27 Score=215.63 Aligned_cols=167 Identities=33% Similarity=0.530 Sum_probs=146.6
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhC
Q 008207 133 FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG 212 (574)
Q Consensus 133 ~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~ 212 (574)
||+|.++++.+.+|+++++.||||+|||++|.+|+++.+.... ..+++|++|+++|+.|+.+.+..++.
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~-----------~~~~lii~P~~~l~~q~~~~~~~~~~ 69 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGK-----------DARVLIIVPTRALAEQQFERLRKFFS 69 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTS-----------SSEEEEEESSHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCC-----------CceEEEEeeccccccccccccccccc
Confidence 7999999999999999999999999999999999999998752 12699999999999999999999988
Q ss_pred CCCceEEEEeCCcchH-HHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHhccC
Q 008207 213 AVGLTSCCLYGGAPYH-AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291 (574)
Q Consensus 213 ~~~~~~~~~~gg~~~~-~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~ 291 (574)
..++++..++|+.... .....+..+++|+|+||++|.+++..+..++.++++||+||+|.+...++...+..++..+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~ 149 (169)
T PF00270_consen 70 NTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKR 149 (169)
T ss_dssp TTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHT
T ss_pred ccccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcC
Confidence 8889999999999865 444555667999999999999999886667788999999999999988889999999998866
Q ss_pred ccCceEEEEeccCchhHHH
Q 008207 292 ANKVQTLLFSATLPSWVKH 310 (574)
Q Consensus 292 ~~~~q~ll~SAT~~~~~~~ 310 (574)
..+.|++++|||++..++.
T Consensus 150 ~~~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 150 FKNIQIILLSATLPSNVEK 168 (169)
T ss_dssp TTTSEEEEEESSSTHHHHH
T ss_pred CCCCcEEEEeeCCChhHhh
Confidence 5468999999999976654
No 102
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.95 E-value=7.2e-26 Score=247.27 Aligned_cols=321 Identities=23% Similarity=0.274 Sum_probs=249.2
Q ss_pred ccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhc----C--CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCC
Q 008207 113 RFRISVPLREKLKSKGIESLFPIQAMTFDMVLD----G--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (574)
Q Consensus 113 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~----~--~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (574)
.|+.+...+..+.+.--..-||-|..+|..+.. + -|=++||.-|-|||-+++=+++-....++
T Consensus 576 af~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GK----------- 644 (1139)
T COG1197 576 AFPPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGK----------- 644 (1139)
T ss_pred CCCCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCC-----------
Confidence 355566666666655444789999999999873 3 48999999999999999988888877653
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHh----cCCCcEEEEChHHHHHhHhcCCccCCCc
Q 008207 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSL 262 (574)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~~l~~~l~~~~~~l~~~ 262 (574)
+|.||+||--||.|.++.|+..+.+.++++..+..-.+...+...+ ....||||||.--| +..+.+.++
T Consensus 645 --QVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdL 717 (1139)
T COG1197 645 --QVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDL 717 (1139)
T ss_pred --eEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh-----CCCcEEecC
Confidence 6999999999999999999988888899999998877776665444 35699999996444 456789999
Q ss_pred eEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEE
Q 008207 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (574)
Q Consensus 263 ~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 342 (574)
.+|||||-|+.. -.-..-++.+.. +.-++-||||.=+....++-.-+ .+-.+|...+. ....++-++.
T Consensus 718 GLlIIDEEqRFG-----Vk~KEkLK~Lr~--~VDvLTLSATPIPRTL~Msm~Gi-RdlSvI~TPP~----~R~pV~T~V~ 785 (1139)
T COG1197 718 GLLIIDEEQRFG-----VKHKEKLKELRA--NVDVLTLSATPIPRTLNMSLSGI-RDLSVIATPPE----DRLPVKTFVS 785 (1139)
T ss_pred CeEEEechhhcC-----ccHHHHHHHHhc--cCcEEEeeCCCCcchHHHHHhcc-hhhhhccCCCC----CCcceEEEEe
Confidence 999999999863 222334444544 67899999997665556655554 34444443332 2233444444
Q ss_pred eCCchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC------CCccccccCCHHHHHHHHHHHhCCCccEEEEe
Q 008207 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416 (574)
Q Consensus 343 ~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT 416 (574)
+.+. ..+-..+++....+|++...+|..+..+.++..|+ .+.+.||.|+..+-++++..|-+|+++|||||
T Consensus 786 ~~d~---~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~T 862 (1139)
T COG1197 786 EYDD---LLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCT 862 (1139)
T ss_pred cCCh---HHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEe
Confidence 3333 23333445555688999999999999988888776 68899999999999999999999999999999
Q ss_pred ccccccCCCCCCcEEEEeCCCC-CHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 417 NVAARGLDINDVQLIIQCEPPR-DVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 417 d~~~~Gldi~~v~~VI~~d~p~-s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
.+.+.|||||+++.+|..+... -.++..|.-||+||..+.|.||+++.+.
T Consensus 863 TIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 863 TIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred eeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 9999999999999988666543 4788999999999999999999999975
No 103
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=6.6e-27 Score=241.36 Aligned_cols=306 Identities=18% Similarity=0.221 Sum_probs=205.7
Q ss_pred HHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHH-HhhCCC
Q 008207 136 QAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD-VYGGAV 214 (574)
Q Consensus 136 Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~-~~~~~~ 214 (574)
-++++.+|..+.-+|+||.||||||...-..+++.-...... ..+.-+-|..|+|--|..++.... .++. .
T Consensus 261 Eq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~-------~~~gmIGITqPRRVAaiamAkRVa~EL~~-~ 332 (1172)
T KOG0926|consen 261 EQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQS-------SSPGMIGITQPRRVAAIAMAKRVAFELGV-L 332 (1172)
T ss_pred HHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccC-------CCCCeeeecCchHHHHHHHHHHHHHHhcc-C
Confidence 346777888888899999999999996555555443332211 112246788999977776665543 3332 2
Q ss_pred CceEE--EEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHhc---
Q 008207 215 GLTSC--CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV--- 289 (574)
Q Consensus 215 ~~~~~--~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l--- 289 (574)
+-.|+ .-+.|+ ....+.|.++|.|.|+..+.++. .|+.++.|||||||+-.- +.+.+.-++..+
T Consensus 333 ~~eVsYqIRfd~t--------i~e~T~IkFMTDGVLLrEi~~Df-lL~kYSvIIlDEAHERSv--nTDILiGmLSRiV~L 401 (1172)
T KOG0926|consen 333 GSEVSYQIRFDGT--------IGEDTSIKFMTDGVLLREIENDF-LLTKYSVIILDEAHERSV--NTDILIGMLSRIVPL 401 (1172)
T ss_pred ccceeEEEEeccc--------cCCCceeEEecchHHHHHHHHhH-hhhhceeEEechhhhccc--hHHHHHHHHHHHHHH
Confidence 22222 223222 23458899999999999998865 499999999999997421 111112222211
Q ss_pred ----c----CccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhhh---hhhhHHHH
Q 008207 290 ----E----DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS---QVIPDIIR 358 (574)
Q Consensus 290 ----~----~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~l~~ll~ 358 (574)
. ...+++.|+||||+.-.-..-.++.+...+..|.+.....+. .+ |+--..+..... ...+.+.+
T Consensus 402 R~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPV---sI-HF~krT~~DYi~eAfrKtc~IH~ 477 (1172)
T KOG0926|consen 402 RQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPV---SI-HFNKRTPDDYIAEAFRKTCKIHK 477 (1172)
T ss_pred HHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCce---EE-EeccCCCchHHHHHHHHHHHHhh
Confidence 1 122678999999986543333344555566677765543211 11 222222222222 23334444
Q ss_pred hhcCCCeEEEEecChHHHHHHHHhCC------------------------------------------------------
Q 008207 359 CYSSGGRTIIFTETKESASQLADLLP------------------------------------------------------ 384 (574)
Q Consensus 359 ~~~~~~~~lVF~~t~~~~~~l~~~l~------------------------------------------------------ 384 (574)
.+ +.|.+|||+..+.+++.|+..|+
T Consensus 478 kL-P~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~ 556 (1172)
T KOG0926|consen 478 KL-PPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQEL 556 (1172)
T ss_pred cC-CCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhh
Confidence 44 77899999999999998888772
Q ss_pred -------------------------------------------------CCccccccCCHHHHHHHHHHHhCCCccEEEE
Q 008207 385 -------------------------------------------------GARALHGDIQQSQREVTLAGFRSGKFMTLVA 415 (574)
Q Consensus 385 -------------------------------------------------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLva 415 (574)
.+.++++-++..++.++++.-..|..-++||
T Consensus 557 ~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVa 636 (1172)
T KOG0926|consen 557 VDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVA 636 (1172)
T ss_pred hcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEe
Confidence 1334778889999999999999999999999
Q ss_pred eccccccCCCCCCcEEEEeCCC--------C----------CHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 416 TNVAARGLDINDVQLIIQCEPP--------R----------DVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 416 Td~~~~Gldi~~v~~VI~~d~p--------~----------s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
|++|...|.||+|.+||+.+.- . |..+--||+|||||.| +|.||.||+..
T Consensus 637 TNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 637 TNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred ccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 9999999999999999976533 2 4455679999999997 99999999965
No 104
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.1e-24 Score=205.97 Aligned_cols=298 Identities=19% Similarity=0.243 Sum_probs=207.3
Q ss_pred CCcHHHHHHHHHH----hcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHH
Q 008207 131 SLFPIQAMTFDMV----LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (574)
Q Consensus 131 ~~~~~Q~~~i~~i----l~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (574)
+++|.|+.+-..+ .+.++.|+.|-||+|||-...-.+-..+..+ .++.|.+|....+..++..
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G-------------~~vciASPRvDVclEl~~R 163 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG-------------GRVCIASPRVDVCLELYPR 163 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC-------------CeEEEecCcccchHHHHHH
Confidence 7899998766554 4678999999999999987444444444443 3589999999999999999
Q ss_pred HHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHH
Q 008207 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286 (574)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il 286 (574)
++.-+ .+..+.++||+.+..-+ .+++|+|.-.|+.+ -..++++|+||+|..--.. -..+..-.
T Consensus 164 lk~aF--~~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrF-------k~aFD~liIDEVDAFP~~~-d~~L~~Av 226 (441)
T COG4098 164 LKQAF--SNCDIDLLYGDSDSYFR-------APLVVATTHQLLRF-------KQAFDLLIIDEVDAFPFSD-DQSLQYAV 226 (441)
T ss_pred HHHhh--ccCCeeeEecCCchhcc-------ccEEEEehHHHHHH-------HhhccEEEEeccccccccC-CHHHHHHH
Confidence 87654 45777889988764322 78999999999874 3357899999999753111 11222222
Q ss_pred H-hccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhhh------hhhhHHHH-
Q 008207 287 G-KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS------QVIPDIIR- 358 (574)
Q Consensus 287 ~-~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~------~~l~~ll~- 358 (574)
+ .... .--+|.+|||.+..+. +.........+.+..... ..+..+..+...-++..+. ..|...++
T Consensus 227 ~~ark~--~g~~IylTATp~k~l~---r~~~~g~~~~~klp~RfH-~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lek 300 (441)
T COG4098 227 KKARKK--EGATIYLTATPTKKLE---RKILKGNLRILKLPARFH-GKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEK 300 (441)
T ss_pred HHhhcc--cCceEEEecCChHHHH---HHhhhCCeeEeecchhhc-CCCCCCCceEEeccHHHHhhhccCCHHHHHHHHH
Confidence 2 2222 3468999999997543 444433444444443322 2222222222222333222 23444444
Q ss_pred hhcCCCeEEEEecChHHHHHHHHhCC------CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEE
Q 008207 359 CYSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLII 432 (574)
Q Consensus 359 ~~~~~~~~lVF~~t~~~~~~l~~~l~------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI 432 (574)
....+.+++||+++.+..+.++..|+ .+...|+.- ..|.+..++|++|++++||+|.+++||+.+|+|++++
T Consensus 301 q~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~V 378 (441)
T COG4098 301 QRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFV 378 (441)
T ss_pred HHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEE
Confidence 44577899999999999999999984 445677654 4788999999999999999999999999999999866
Q ss_pred EeCC--CCCHhHHHHHhcccccCCC--cceEEEEECCC
Q 008207 433 QCEP--PRDVEAYIHRSGRTGRAGN--TGVAVMLYDPR 466 (574)
Q Consensus 433 ~~d~--p~s~~~yiqr~GR~gR~g~--~G~~i~l~~~~ 466 (574)
.-.- -.+.+..+|.+||+||.-. .|.++.|....
T Consensus 379 lgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~ 416 (441)
T COG4098 379 LGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGK 416 (441)
T ss_pred ecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccc
Confidence 4332 3678899999999999743 67777776544
No 105
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=6.4e-26 Score=230.49 Aligned_cols=310 Identities=18% Similarity=0.215 Sum_probs=216.2
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHH
Q 008207 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (574)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~ 205 (574)
...+...+.++.+.+..|..++-+|+.+.||||||......+++.-. ....-+-+..|.|.-|..++.
T Consensus 351 qrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY------------~~~GmIGcTQPRRvAAiSVAk 418 (1042)
T KOG0924|consen 351 QRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGY------------ADNGMIGCTQPRRVAAISVAK 418 (1042)
T ss_pred HHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhccc------------ccCCeeeecCchHHHHHHHHH
Confidence 34566778889999999999999999999999999965444443222 222346778899998888887
Q ss_pred HHH-HhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHH
Q 008207 206 DFD-VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284 (574)
Q Consensus 206 ~~~-~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~ 284 (574)
.+. ..+...|-.|+.-+.-.+. ....+-|-++|.|.|+....... .|.++++||+||||+-.-. .+.+--
T Consensus 419 rVa~EM~~~lG~~VGYsIRFEdv------T~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslN--tDilfG 489 (1042)
T KOG0924|consen 419 RVAEEMGVTLGDTVGYSIRFEDV------TSEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLN--TDILFG 489 (1042)
T ss_pred HHHHHhCCccccccceEEEeeec------CCCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccc--hHHHHH
Confidence 764 3433333333222111111 12347799999999988765544 5889999999999974211 112222
Q ss_pred HHHh-ccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhhh-hhhhHHHHhh--
Q 008207 285 ILGK-VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS-QVIPDIIRCY-- 360 (574)
Q Consensus 285 il~~-l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~l~~ll~~~-- 360 (574)
+++. +....++++|+.||||.. +-...|+ .+.+...+.+.. ..+...+...+..+-. .++...+..+
T Consensus 490 llk~~larRrdlKliVtSATm~a---~kf~nfF-gn~p~f~IpGRT-----yPV~~~~~k~p~eDYVeaavkq~v~Ihl~ 560 (1042)
T KOG0924|consen 490 LLKKVLARRRDLKLIVTSATMDA---QKFSNFF-GNCPQFTIPGRT-----YPVEIMYTKTPVEDYVEAAVKQAVQIHLS 560 (1042)
T ss_pred HHHHHHHhhccceEEEeeccccH---HHHHHHh-CCCceeeecCCc-----cceEEEeccCchHHHHHHHHhhheEeecc
Confidence 2221 222336899999999986 3344555 355555555443 2344444444433322 2333333322
Q ss_pred cCCCeEEEEecChHHHHHHHHhCC--------------CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCC
Q 008207 361 SSGGRTIIFTETKESASQLADLLP--------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426 (574)
Q Consensus 361 ~~~~~~lVF~~t~~~~~~l~~~l~--------------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~ 426 (574)
...|.+|||...++.++..+..+. .+.++++.|++..+.++++.-..|..+++|||++|+..|.||
T Consensus 561 ~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~ 640 (1042)
T KOG0924|consen 561 GPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIP 640 (1042)
T ss_pred CCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeec
Confidence 355889999999988776665543 466899999999999999988899999999999999999999
Q ss_pred CCcEEEEeC------------------CCCCHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 427 DVQLIIQCE------------------PPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 427 ~v~~VI~~d------------------~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
++.+||+.+ .|.|...--||+|||||.| +|.||.+|+..
T Consensus 641 gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 641 GIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred ceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 999999765 4678888999999999997 99999999974
No 106
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.94 E-value=6.1e-26 Score=240.28 Aligned_cols=329 Identities=23% Similarity=0.306 Sum_probs=235.5
Q ss_pred HHHHHHHCCCCCCcHHHHHHH--HHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcH
Q 008207 120 LREKLKSKGIESLFPIQAMTF--DMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197 (574)
Q Consensus 120 l~~~l~~~g~~~~~~~Q~~~i--~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr 197 (574)
..-..+..|...++.||.+++ |.++.++++|..+||+.|||++.-+-++..+.-... .++.+.|-.
T Consensus 212 ~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr------------~~llilp~v 279 (1008)
T KOG0950|consen 212 SHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR------------NVLLILPYV 279 (1008)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh------------ceeEeccee
Confidence 334446679999999999998 778899999999999999999998888877765433 278899999
Q ss_pred HHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhc--CCccCCCceEEEecCchhhhc
Q 008207 198 ELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER--GNIDLSSLKFRVLDEADEMLR 275 (574)
Q Consensus 198 eLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~--~~~~l~~~~~lVlDEah~~l~ 275 (574)
..++.-...+..++...|+.+.+.+|+.+.... ....++.|||.++-..++.+ ..-.+..+.+||+||.|.+.+
T Consensus 280 siv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d 355 (1008)
T KOG0950|consen 280 SIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGD 355 (1008)
T ss_pred ehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeec
Confidence 888888888889999999999998877665432 23478999999987655543 122466799999999999999
Q ss_pred CCcHHHHHHHHHhcc---CccCceEEEEeccCchhHHHHHHHhcccC-----CeEEEEecCc----------ccccccce
Q 008207 276 MGFVEDVELILGKVE---DANKVQTLLFSATLPSWVKHISTKFLKSD-----KKTIDLVGNE----------KMKASTNV 337 (574)
Q Consensus 276 ~~~~~~~~~il~~l~---~~~~~q~ll~SAT~~~~~~~~~~~~~~~~-----~~~i~~~~~~----------~~~~~~~i 337 (574)
.+....++.++..+- .....|+|+||||+|+. .+.+.++... ...+.+.... ......++
T Consensus 356 ~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~i 433 (1008)
T KOG0950|consen 356 KGRGAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREI 433 (1008)
T ss_pred cccchHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHHh
Confidence 998888888876542 22246899999999972 3334444210 1111110000 00000000
Q ss_pred eEEEEeCCchhhhhhhhHHH-HhhcCCCeEEEEecChHHHHHHHHhCC--------------------------------
Q 008207 338 RHIVLPCSSSARSQVIPDII-RCYSSGGRTIIFTETKESASQLADLLP-------------------------------- 384 (574)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~ll-~~~~~~~~~lVF~~t~~~~~~l~~~l~-------------------------------- 384 (574)
...+.........+.+..+. .....+.++||||+++..++.++..+.
T Consensus 434 a~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~l 513 (1008)
T KOG0950|consen 434 ANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGIL 513 (1008)
T ss_pred hhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCccc
Confidence 00000000000001122221 222345679999999999988775541
Q ss_pred ----------CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEe---C-CCCCHhHHHHHhccc
Q 008207 385 ----------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQC---E-PPRDVEAYIHRSGRT 450 (574)
Q Consensus 385 ----------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~---d-~p~s~~~yiqr~GR~ 450 (574)
++.++|++++..+|..+...|++|...|++||+.++.|++.|..+++|-. + .+.+.-+|.||+|||
T Consensus 514 d~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRA 593 (1008)
T KOG0950|consen 514 DPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRA 593 (1008)
T ss_pred chHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhh
Confidence 56789999999999999999999999999999999999999999988853 2 234678999999999
Q ss_pred ccCCC--cceEEEEECCC
Q 008207 451 GRAGN--TGVAVMLYDPR 466 (574)
Q Consensus 451 gR~g~--~G~~i~l~~~~ 466 (574)
||+|- .|.+++++.+.
T Consensus 594 GR~gidT~GdsiLI~k~~ 611 (1008)
T KOG0950|consen 594 GRTGIDTLGDSILIIKSS 611 (1008)
T ss_pred hhcccccCcceEEEeecc
Confidence 99985 79999999987
No 107
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.94 E-value=2.7e-25 Score=252.09 Aligned_cols=316 Identities=16% Similarity=0.214 Sum_probs=197.2
Q ss_pred CCCcHHHHHHHHHHh----c-CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHH
Q 008207 130 ESLFPIQAMTFDMVL----D-GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il----~-~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (574)
..++++|.++|..+. . .+.++++++||||||++++. ++..+.... ...++|||+|+++|+.|+.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~~----------~~~rVLfLvDR~~L~~Qa~ 480 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKAK----------RFRRILFLVDRSALGEQAE 480 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhcC----------ccCeEEEEecHHHHHHHHH
Confidence 368999999998765 2 36799999999999987443 444444321 2237999999999999999
Q ss_pred HHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcC-----CccCCCceEEEecCchhhhc----
Q 008207 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG-----NIDLSSLKFRVLDEADEMLR---- 275 (574)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~-----~~~l~~~~~lVlDEah~~l~---- 275 (574)
+.|..++...+.....+++...... ........|+|+|...|...+... .+.+..+++||+||||+-..
T Consensus 481 ~~F~~~~~~~~~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~ 558 (1123)
T PRK11448 481 DAFKDTKIEGDQTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKE 558 (1123)
T ss_pred HHHHhcccccccchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccc
Confidence 9998764332222222222111111 112345799999999997765321 24567899999999998521
Q ss_pred -----C------CcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHH--------------Hhccc--CCeEEEEecC
Q 008207 276 -----M------GFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST--------------KFLKS--DKKTIDLVGN 328 (574)
Q Consensus 276 -----~------~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~--------------~~~~~--~~~~i~~~~~ 328 (574)
. .+...+..++.+.. ...|+||||.......+.. .|+.. .+..+...-.
T Consensus 559 ~~~~~~~~~~~~~~~~~yr~iL~yFd----A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~ 634 (1123)
T PRK11448 559 MSEGELQFRDQLDYVSKYRRVLDYFD----AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLS 634 (1123)
T ss_pred cccchhccchhhhHHHHHHHHHhhcC----ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEec
Confidence 0 12455677777653 3579999997532221111 11110 0111111000
Q ss_pred cc---cccc----------cceeEEEEe------CCc-------hhhh-hhhhHHHHhh--cCCCeEEEEecChHHHHHH
Q 008207 329 EK---MKAS----------TNVRHIVLP------CSS-------SARS-QVIPDIIRCY--SSGGRTIIFTETKESASQL 379 (574)
Q Consensus 329 ~~---~~~~----------~~i~~~~~~------~~~-------~~~~-~~l~~ll~~~--~~~~~~lVF~~t~~~~~~l 379 (574)
.. .... ..+....+. ... .... .++..++... ..++++||||.+..+|+.+
T Consensus 635 ~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i 714 (1123)
T PRK11448 635 QEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMV 714 (1123)
T ss_pred cccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHH
Confidence 00 0000 000000000 000 0000 1112233222 1347999999999999988
Q ss_pred HHhCC-------------CCccccccCCHHHHHHHHHHHhCCCc-cEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHH
Q 008207 380 ADLLP-------------GARALHGDIQQSQREVTLAGFRSGKF-MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIH 445 (574)
Q Consensus 380 ~~~l~-------------~~~~lh~~~~~~~r~~~~~~F~~g~~-~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiq 445 (574)
...|. .+..+||+.+ ++..+++.|+++.. +|+|+++++.+|+|+|.|.+||++.++.|...|+|
T Consensus 715 ~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~Q 792 (1123)
T PRK11448 715 VRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQ 792 (1123)
T ss_pred HHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHH
Confidence 77653 1234788875 57789999999887 69999999999999999999999999999999999
Q ss_pred HhcccccCCC--cceEEEEEC
Q 008207 446 RSGRTGRAGN--TGVAVMLYD 464 (574)
Q Consensus 446 r~GR~gR~g~--~G~~i~l~~ 464 (574)
|+||+.|.-. ....+++++
T Consensus 793 mIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 793 MLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred HHhhhccCCccCCCceEEEEe
Confidence 9999999743 233455555
No 108
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.94 E-value=5.5e-25 Score=245.03 Aligned_cols=316 Identities=16% Similarity=0.220 Sum_probs=210.2
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHH
Q 008207 131 SLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (574)
Q Consensus 131 ~~~~~Q~~~i~~il----~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (574)
+|.|+|.+++.++. +|.+.|++..+|.|||+..+.. +..+.... +....+|||||. .+..||.++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIal-L~~L~~~~---------~~~gp~LIVvP~-SlL~nW~~E 237 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISL-LGYLHEYR---------GITGPHMVVAPK-STLGNWMNE 237 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHHHHhc---------CCCCCEEEEeCh-HHHHHHHHH
Confidence 78999999999875 5788999999999999975433 33333211 111238999998 778889999
Q ss_pred HHHhhCCCCceEEEEeCCcchHHHHH---HhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHH
Q 008207 207 FDVYGGAVGLTSCCLYGGAPYHAQEF---KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283 (574)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~ 283 (574)
+.+|+. .+++..++|......... ......+|+|+|++.+..... .+.--.+.+|||||||++-+. ...+.
T Consensus 238 i~kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~--~Skls 311 (1033)
T PLN03142 238 IRRFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNE--NSLLS 311 (1033)
T ss_pred HHHHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCH--HHHHH
Confidence 999874 466677777544322211 123468999999999876432 233345789999999998543 23344
Q ss_pred HHHHhccCccCceEEEEeccCch-hHHHH----------------------------------------HHHhc-c----
Q 008207 284 LILGKVEDANKVQTLLFSATLPS-WVKHI----------------------------------------STKFL-K---- 317 (574)
Q Consensus 284 ~il~~l~~~~~~q~ll~SAT~~~-~~~~~----------------------------------------~~~~~-~---- 317 (574)
..+..+.. ...+++|||.-. .+..+ .+.++ +
T Consensus 312 kalr~L~a---~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~Ks 388 (1033)
T PLN03142 312 KTMRLFST---NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKS 388 (1033)
T ss_pred HHHHHhhc---CcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHH
Confidence 55555543 356899999311 00000 00000 0
Q ss_pred ----c-CCe---EEEEecCcccc---------------c---cc---c----e----eEEEE---------------eCC
Q 008207 318 ----S-DKK---TIDLVGNEKMK---------------A---ST---N----V----RHIVL---------------PCS 345 (574)
Q Consensus 318 ----~-~~~---~i~~~~~~~~~---------------~---~~---~----i----~~~~~---------------~~~ 345 (574)
. ++. .+.+.-..... . .. + + .|-++ ...
T Consensus 389 dV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie 468 (1033)
T PLN03142 389 DVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVE 468 (1033)
T ss_pred HHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhh
Confidence 0 000 00000000000 0 00 0 0 00000 001
Q ss_pred chhhhhhhhHHHHhh-cCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCC---CccEEEEec
Q 008207 346 SSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG---KFMTLVATN 417 (574)
Q Consensus 346 ~~~~~~~l~~ll~~~-~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g---~~~vLvaTd 417 (574)
.+.|..+|..++... ..+.++|||+......+.|.++|. .+..+||+++..+|..+++.|+.. .+.+|++|.
T Consensus 469 ~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTr 548 (1033)
T PLN03142 469 NSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTR 548 (1033)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEecc
Confidence 234455555555433 356799999999999999988875 567899999999999999999753 356799999
Q ss_pred cccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceE--EEEECCC
Q 008207 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA--VMLYDPR 466 (574)
Q Consensus 418 ~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~--i~l~~~~ 466 (574)
+++.|||+..+++||+||+||++..+.|++||+.|.|+...| |.|+..+
T Consensus 549 AGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 549 AGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred ccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 999999999999999999999999999999999999987644 6777776
No 109
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=4.6e-24 Score=209.78 Aligned_cols=318 Identities=19% Similarity=0.228 Sum_probs=224.6
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 008207 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (574)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (574)
.+.|+..+.++...+.|+++---..+..+.+.+..+.+++-++++|.||||||...-.+.+........
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~----------- 92 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLT----------- 92 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhcc-----------
Confidence 678999999999999999887777788888889999999999999999999999766566655544321
Q ss_pred CeEEEEeCcHHHHHHHHHHHH-----HhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCc
Q 008207 188 PSVLVLLPTRELAKQVHEDFD-----VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSL 262 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~-----~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~ 262 (574)
.+....|.|.-|.+++.... .+|...|+.+- +..-...++-.-+||.|+|+.......+ +..+
T Consensus 93 -~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIr----------fEdC~~~~T~Lky~tDgmLlrEams~p~-l~~y 160 (699)
T KOG0925|consen 93 -GVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIR----------FEDCTSPNTLLKYCTDGMLLREAMSDPL-LGRY 160 (699)
T ss_pred -ceeecCchHHHHHHHHHHHHHHhccccchhcccccc----------ccccCChhHHHHHhcchHHHHHHhhCcc-cccc
Confidence 37888899987777765542 34444443321 1111111233457888998887766553 8899
Q ss_pred eEEEecCchhhhcCC--cHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEE
Q 008207 263 KFRVLDEADEMLRMG--FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340 (574)
Q Consensus 263 ~~lVlDEah~~l~~~--~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~ 340 (574)
++||+||||+-.-.. ....+..++.. .+.++++++|||+.. .-.+.|+ .+...+.+.+. ..+..+
T Consensus 161 ~viiLDeahERtlATDiLmGllk~v~~~---rpdLk~vvmSatl~a---~Kfq~yf-~n~Pll~vpg~------~PvEi~ 227 (699)
T KOG0925|consen 161 GVIILDEAHERTLATDILMGLLKEVVRN---RPDLKLVVMSATLDA---EKFQRYF-GNAPLLAVPGT------HPVEIF 227 (699)
T ss_pred cEEEechhhhhhHHHHHHHHHHHHHHhh---CCCceEEEeecccch---HHHHHHh-CCCCeeecCCC------CceEEE
Confidence 999999999742110 11122223322 247899999999875 4456666 56777766542 234456
Q ss_pred EEeCCchhhhhh-hhHHHHh--hcCCCeEEEEecChHHHHHHHHhCC-------------CCccccccCCHHHHHHHHHH
Q 008207 341 VLPCSSSARSQV-IPDIIRC--YSSGGRTIIFTETKESASQLADLLP-------------GARALHGDIQQSQREVTLAG 404 (574)
Q Consensus 341 ~~~~~~~~~~~~-l~~ll~~--~~~~~~~lVF~~t~~~~~~l~~~l~-------------~~~~lh~~~~~~~r~~~~~~ 404 (574)
|......+..+. +..++.. ....|.+|||..+.++++..++.+. .+.++| +.++.++++.
T Consensus 228 Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep 303 (699)
T KOG0925|consen 228 YTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEP 303 (699)
T ss_pred ecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCC
Confidence 665555554443 3333332 2467899999999999888877664 455666 6666666654
Q ss_pred HhC---C--CccEEEEeccccccCCCCCCcEEEEeC------------------CCCCHhHHHHHhcccccCCCcceEEE
Q 008207 405 FRS---G--KFMTLVATNVAARGLDINDVQLIIQCE------------------PPRDVEAYIHRSGRTGRAGNTGVAVM 461 (574)
Q Consensus 405 F~~---g--~~~vLvaTd~~~~Gldi~~v~~VI~~d------------------~p~s~~~yiqr~GR~gR~g~~G~~i~ 461 (574)
... | ..+|+|+|+++...+.+++|.+||+.+ .|.|..+-.||.||+||. ++|.|+.
T Consensus 304 ~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfr 382 (699)
T KOG0925|consen 304 APEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFR 382 (699)
T ss_pred CCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEE
Confidence 432 2 458999999999999999999999766 366888999999999998 6999999
Q ss_pred EECCC
Q 008207 462 LYDPR 466 (574)
Q Consensus 462 l~~~~ 466 (574)
+|++.
T Consensus 383 LYte~ 387 (699)
T KOG0925|consen 383 LYTEE 387 (699)
T ss_pred eecHH
Confidence 99964
No 110
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=2.7e-23 Score=224.74 Aligned_cols=122 Identities=24% Similarity=0.320 Sum_probs=105.3
Q ss_pred hhhhhhhhHHHH-hhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccc
Q 008207 347 SARSQVIPDIIR-CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421 (574)
Q Consensus 347 ~~~~~~l~~ll~-~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~ 421 (574)
..|...+...+. ....+.++||||+|++.++.|+..|. ...++|+ .+.+|+..+..|+.+...|+||||+|+|
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGR 658 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGR 658 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCC
Confidence 456666666664 34578899999999999999999997 4567886 6889999999999999999999999999
Q ss_pred cCCCC---CCc-----EEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCCchHH
Q 008207 422 GLDIN---DVQ-----LIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 470 (574)
Q Consensus 422 Gldi~---~v~-----~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~~~~~ 470 (574)
|+||+ +|. +||+++.|.|...|.||+|||||.|.+|.+++|++..+..+
T Consensus 659 GtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lm 715 (1025)
T PRK12900 659 GTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELM 715 (1025)
T ss_pred CCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHH
Confidence 99999 554 45999999999999999999999999999999999874443
No 111
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.90 E-value=2.2e-21 Score=206.94 Aligned_cols=282 Identities=22% Similarity=0.305 Sum_probs=191.6
Q ss_pred HHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHH
Q 008207 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (574)
Q Consensus 124 l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv 203 (574)
..+.....|+..|.-....++.|+++-+.||||.|||.--++..+-....+ -+++||+||+.|+.|+
T Consensus 75 F~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kg-------------kr~yii~PT~~Lv~Q~ 141 (1187)
T COG1110 75 FKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKG-------------KRVYIIVPTTTLVRQV 141 (1187)
T ss_pred HHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcC-------------CeEEEEecCHHHHHHH
Confidence 344433499999999999999999999999999999964333333222222 3699999999999999
Q ss_pred HHHHHHhhCCCC-ceEEEEe-CCcchHHHHH---H-hcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCC
Q 008207 204 HEDFDVYGGAVG-LTSCCLY-GGAPYHAQEF---K-LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277 (574)
Q Consensus 204 ~~~~~~~~~~~~-~~~~~~~-gg~~~~~~~~---~-l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~ 277 (574)
++.+..++...+ +.+..+| +..+...... . .+.+.||+|+|..-|...+.. +.--+++++++|.+|.++..+
T Consensus 142 ~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~Lkas 219 (1187)
T COG1110 142 YERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKAS 219 (1187)
T ss_pred HHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhcc
Confidence 999999886655 5554434 4434433222 2 245799999999888766553 111368999999999987433
Q ss_pred -----------cHHH-------HHHHHHhcc----------------------CccCceEEEEeccCchhH--HHHHHHh
Q 008207 278 -----------FVED-------VELILGKVE----------------------DANKVQTLLFSATLPSWV--KHISTKF 315 (574)
Q Consensus 278 -----------~~~~-------~~~il~~l~----------------------~~~~~q~ll~SAT~~~~~--~~~~~~~ 315 (574)
|.++ +..+...+. ....-++++.|||..+.- ..+.+..
T Consensus 220 kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReL 299 (1187)
T COG1110 220 KNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFREL 299 (1187)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHH
Confidence 3221 111111111 112358899999975432 2334444
Q ss_pred cccCCeEEEEecCcccccccceeEEEEeCCchhhhhhhhHHHHhhcCCCeEEEEecC---hHHHHHHHHhCC----CCcc
Q 008207 316 LKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTET---KESASQLADLLP----GARA 388 (574)
Q Consensus 316 ~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t---~~~~~~l~~~l~----~~~~ 388 (574)
+. +..+.......|+...|... .....+..+++... ...|||++. ++.++.+++.|+ ++..
T Consensus 300 lg-------FevG~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG--~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~ 367 (1187)
T COG1110 300 LG-------FEVGSGGEGLRNIVDIYVES---ESLEKVVELVKKLG--DGGLIFVPIDYGREKAEELAEYLRSHGINAEL 367 (1187)
T ss_pred hC-------CccCccchhhhheeeeeccC---ccHHHHHHHHHHhC--CCeEEEEEcHHhHHHHHHHHHHHHhcCceEEE
Confidence 42 11122223445666666655 34455566666653 468999999 999999999998 4445
Q ss_pred ccccCCHHHHHHHHHHHhCCCccEEEEe----ccccccCCCCC-CcEEEEeCCC
Q 008207 389 LHGDIQQSQREVTLAGFRSGKFMTLVAT----NVAARGLDIND-VQLIIQCEPP 437 (574)
Q Consensus 389 lh~~~~~~~r~~~~~~F~~g~~~vLvaT----d~~~~Gldi~~-v~~VI~~d~p 437 (574)
+|+ ...+.++.|..|++++||.. .++-||||+|. +.++|+|++|
T Consensus 368 ~~a-----~~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 368 IHA-----EKEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred eec-----cchhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 555 33788999999999999975 57889999995 7899999988
No 112
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.90 E-value=6.9e-21 Score=215.34 Aligned_cols=345 Identities=17% Similarity=0.196 Sum_probs=214.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHH----HHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEE
Q 008207 116 ISVPLREKLKSKGIESLFPIQAMTFD----MVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVL 191 (574)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i~----~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~L 191 (574)
+++.+.+.+...||+ ++|.|.+.+. .+.+++++++.||||+|||++|++|++..+..+ .+++
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~~-------------~~vv 296 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAITE-------------KPVV 296 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcCC-------------CeEE
Confidence 445677788888986 8899998666 556789999999999999999999998776521 1499
Q ss_pred EEeCcHHHHHHHHH-HHHHhhCCCC--ceEEEEeCCcchH---HHH----------------------------------
Q 008207 192 VLLPTRELAKQVHE-DFDVYGGAVG--LTSCCLYGGAPYH---AQE---------------------------------- 231 (574)
Q Consensus 192 il~PtreLa~Qv~~-~~~~~~~~~~--~~~~~~~gg~~~~---~~~---------------------------------- 231 (574)
|.+||++|..|+.. ++..+....+ ++++.+.|+.++- ...
T Consensus 297 i~t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el 376 (850)
T TIGR01407 297 ISTNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDEL 376 (850)
T ss_pred EEeCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhc
Confidence 99999999999865 5665554433 7777777776430 000
Q ss_pred ----------------------------------HHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcC-
Q 008207 232 ----------------------------------FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM- 276 (574)
Q Consensus 232 ----------------------------------~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~- 276 (574)
+.....+||||+...-|+..+......+....++||||||++.+.
T Consensus 377 ~~~~~~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a 456 (850)
T TIGR01407 377 NLKGGNKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIA 456 (850)
T ss_pred cCCCcchhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHH
Confidence 000113789999999998887554434566789999999997421
Q ss_pred ------Cc-----HHH----------------------------------------------------------------
Q 008207 277 ------GF-----VED---------------------------------------------------------------- 281 (574)
Q Consensus 277 ------~~-----~~~---------------------------------------------------------------- 281 (574)
.+ ...
T Consensus 457 ~~~~~~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~ 536 (850)
T TIGR01407 457 ENQLQEELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQ 536 (850)
T ss_pred HHHhcceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 00 000
Q ss_pred HHHHHHh-----------c----------c-----C--------------------ccCceEEEEeccCch--hHHHHHH
Q 008207 282 VELILGK-----------V----------E-----D--------------------ANKVQTLLFSATLPS--WVKHIST 313 (574)
Q Consensus 282 ~~~il~~-----------l----------~-----~--------------------~~~~q~ll~SAT~~~--~~~~~~~ 313 (574)
+...+.. + . . .....+|++|||++. ....+.+
T Consensus 537 l~~~~~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~ 616 (850)
T TIGR01407 537 LRKFDLALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQ 616 (850)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHH
Confidence 0000000 0 0 0 012477899999973 1222222
Q ss_pred HhcccCCeEEEEecCcccccccceeEEEEeCC--------chhhhhhhhHHH-Hhh-cCCCeEEEEecChHHHHHHHHhC
Q 008207 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS--------SSARSQVIPDII-RCY-SSGGRTIIFTETKESASQLADLL 383 (574)
Q Consensus 314 ~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~--------~~~~~~~l~~ll-~~~-~~~~~~lVF~~t~~~~~~l~~~l 383 (574)
..--.......+.... .....-..++++.. ...-...+...+ ... ..++++|||++|....+.++..|
T Consensus 617 ~lGl~~~~~~~~~~sp--f~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L 694 (850)
T TIGR01407 617 LLGLTDVHFNTIEPTP--LNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDML 694 (850)
T ss_pred hcCCCccccceecCCC--CCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHH
Confidence 2211111112221110 11011112232211 111111222222 211 24579999999999999999887
Q ss_pred CC------CccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCc--EEEEeCCCCC----------------
Q 008207 384 PG------ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQ--LIIQCEPPRD---------------- 439 (574)
Q Consensus 384 ~~------~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~--~VI~~d~p~s---------------- 439 (574)
.. ...+..+.. ..|..++++|++|+..||++|+.+++|||+++.. .||...+|..
T Consensus 695 ~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~ 773 (850)
T TIGR01407 695 NELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQ 773 (850)
T ss_pred hhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence 52 333444433 5789999999999999999999999999999877 4666666631
Q ss_pred --------------HhHHHHHhcccccCCCcceEEEEECCC---chHHHHHHHHh
Q 008207 440 --------------VEAYIHRSGRTGRAGNTGVAVMLYDPR---KSSVSKIERES 477 (574)
Q Consensus 440 --------------~~~yiqr~GR~gR~g~~G~~i~l~~~~---~~~~~~i~~~~ 477 (574)
...+.|.+||.-|.....-++++++++ ..+-+.+.+.+
T Consensus 774 ~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sL 828 (850)
T TIGR01407 774 EGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSL 828 (850)
T ss_pred hcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhC
Confidence 124568999999987655467777776 23334444443
No 113
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.89 E-value=1.6e-21 Score=211.35 Aligned_cols=124 Identities=29% Similarity=0.415 Sum_probs=108.2
Q ss_pred hhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCC
Q 008207 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426 (574)
Q Consensus 351 ~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~ 426 (574)
.++..+......+.++||||+|+..++.|+..|. .+..+||++++.+|..++..|+.|++.|||||+++++|+|+|
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP 509 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLP 509 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeC
Confidence 4444454455678899999999999999999997 567799999999999999999999999999999999999999
Q ss_pred CCcEEEEeC-----CCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHH
Q 008207 427 DVQLIIQCE-----PPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIER 475 (574)
Q Consensus 427 ~v~~VI~~d-----~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~ 475 (574)
++++||++| .|.+..+|+||+|||||. ..|.+++|++.. ......|++
T Consensus 510 ~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 510 EVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred CCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 999999998 899999999999999998 689999999976 444444433
No 114
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.89 E-value=7.5e-22 Score=218.64 Aligned_cols=322 Identities=21% Similarity=0.257 Sum_probs=212.9
Q ss_pred CCcHHHHHHHHHHhcC---C-cEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHH
Q 008207 131 SLFPIQAMTFDMVLDG---S-DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (574)
Q Consensus 131 ~~~~~Q~~~i~~il~~---~-dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (574)
..++.|..++..++.. . .+++.||||+|||.+.+++++..+.... ....+++++.|+|.++.++++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~---------~~~~r~i~vlP~~t~ie~~~~r 265 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKI---------KLKSRVIYVLPFRTIIEDMYRR 265 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccc---------cccceEEEEccHHHHHHHHHHH
Confidence 3488999999887743 4 7899999999999999999988776631 1345799999999999999999
Q ss_pred HHHhhCCCCceEEEEeCCcchHHHHHH-----h---------cCCCcEEEEChHHHHHhHhcC-Ccc-C--CCceEEEec
Q 008207 207 FDVYGGAVGLTSCCLYGGAPYHAQEFK-----L---------KKGIDVVIGTPGRIKDHIERG-NID-L--SSLKFRVLD 268 (574)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~-----l---------~~~~~IlV~Tp~~l~~~l~~~-~~~-l--~~~~~lVlD 268 (574)
+..++...++......|.......... . .....+.++||-......... ... + =..+.+|+|
T Consensus 266 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlD 345 (733)
T COG1203 266 AKEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILD 345 (733)
T ss_pred HHhhhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhc
Confidence 987665443333222222221111100 0 011345555555554422221 111 1 124789999
Q ss_pred CchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchh
Q 008207 269 EADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348 (574)
Q Consensus 269 Eah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~ 348 (574)
|+|.+.+......+..++..+... ...++++|||+|+........++....................+.+.... ....
T Consensus 346 E~h~~~~~~~~~~l~~~i~~l~~~-g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~ 423 (733)
T COG1203 346 EVHLYADETMLAALLALLEALAEA-GVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERV-DVED 423 (733)
T ss_pred cHHhhcccchHHHHHHHHHHHHhC-CCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccch-hhhh
Confidence 999886653344445555544432 56899999999999988888877443333221110000000111111000 0011
Q ss_pred h--hhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC---C-CccccccCCHHHHHHHHHHH----hCCCccEEEEecc
Q 008207 349 R--SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---G-ARALHGDIQQSQREVTLAGF----RSGKFMTLVATNV 418 (574)
Q Consensus 349 ~--~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~---~-~~~lh~~~~~~~r~~~~~~F----~~g~~~vLvaTd~ 418 (574)
. .............+.+++|.|||+..|.+++..|+ . +..+||.+...+|.+.++.+ ..+...|+|||.+
T Consensus 424 ~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQV 503 (733)
T COG1203 424 GPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQV 503 (733)
T ss_pred hhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeE
Confidence 1 12344444555678999999999999999999998 3 78899999999998888754 4578899999999
Q ss_pred ccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCC--CcceEEEEECCC
Q 008207 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG--NTGVAVMLYDPR 466 (574)
Q Consensus 419 ~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g--~~G~~i~l~~~~ 466 (574)
.+-|+|+. .+++|- =+....+.+||+||++|.| ..|.++.+....
T Consensus 504 IEagvDid-fd~mIT--e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 504 IEAGVDID-FDVLIT--ELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred EEEEeccc-cCeeee--cCCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 99999996 666663 3445889999999999999 577777777655
No 115
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=1.7e-20 Score=198.00 Aligned_cols=322 Identities=20% Similarity=0.225 Sum_probs=212.0
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHH
Q 008207 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (574)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (574)
.|+ .|+++|.-+.-.++.|+ |+...||+|||++..+|++.....+.. +.|++|+.-||.|-+++
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~~-------------VhvvT~NdyLA~RDae~ 138 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGRR-------------VHVITVNDYLARRDAEW 138 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCCC-------------eEEEcCCHHHHHHHHHH
Confidence 355 88999999988888774 779999999999999999887776643 89999999999999999
Q ss_pred HHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHH-HhHhc------CCccCCCceEEEecCchhhhc----
Q 008207 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIK-DHIER------GNIDLSSLKFRVLDEADEMLR---- 275 (574)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~-~~l~~------~~~~l~~~~~lVlDEah~~l~---- 275 (574)
+..+...+|++++++.++.+........ .+||+++|..-|- |+|.. +....+.+.+.||||+|.||-
T Consensus 139 m~~ly~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeAr 216 (764)
T PRK12326 139 MGPLYEALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEAL 216 (764)
T ss_pred HHHHHHhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheecccc
Confidence 9999999999999999988765433333 5899999988763 22221 222356789999999999761
Q ss_pred -----------CCcHHHHHHHHHhccCc------cCceEEEE--------------------------------------
Q 008207 276 -----------MGFVEDVELILGKVEDA------NKVQTLLF-------------------------------------- 300 (574)
Q Consensus 276 -----------~~~~~~~~~il~~l~~~------~~~q~ll~-------------------------------------- 300 (574)
......+..+...+... .+.+.+.+
T Consensus 217 tPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~ 296 (764)
T PRK12326 217 VPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHA 296 (764)
T ss_pred CceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHH
Confidence 11333344444444321 01122222
Q ss_pred ------------------------------------------------------------------------eccCchhH
Q 008207 301 ------------------------------------------------------------------------SATLPSWV 308 (574)
Q Consensus 301 ------------------------------------------------------------------------SAT~~~~~ 308 (574)
|+|.....
T Consensus 297 l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~ 376 (764)
T PRK12326 297 LLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAG 376 (764)
T ss_pred HHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHH
Confidence 22222111
Q ss_pred HHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCCCCc-
Q 008207 309 KHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR- 387 (574)
Q Consensus 309 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~~~- 387 (574)
.++.+-|- -.++.+... .+....+....++.+....-..++..+...+..+.|+||.|.|.+.++.|+..|....
T Consensus 377 ~Ef~~iY~---l~Vv~IPtn-kp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI 452 (764)
T PRK12326 377 EQLRQFYD---LGVSVIPPN-KPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGV 452 (764)
T ss_pred HHHHHHhC---CcEEECCCC-CCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCC
Confidence 11111110 001111000 0000111111122222222334455566677789999999999999999999998433
Q ss_pred ---cccccCCHHHHHHHHHHHhCC-CccEEEEeccccccCCCC---------------CCcEEEEeCCCCCHhHHHHHhc
Q 008207 388 ---ALHGDIQQSQREVTLAGFRSG-KFMTLVATNVAARGLDIN---------------DVQLIIQCEPPRDVEAYIHRSG 448 (574)
Q Consensus 388 ---~lh~~~~~~~r~~~~~~F~~g-~~~vLvaTd~~~~Gldi~---------------~v~~VI~~d~p~s~~~yiqr~G 448 (574)
++++.-. .++.-+-. ..| .-.|.|||++|+||.||. +==|||-...|.|..---|-.|
T Consensus 453 ~h~vLNAk~~--~~EA~IIa-~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrG 529 (764)
T PRK12326 453 PAVVLNAKND--AEEARIIA-EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRG 529 (764)
T ss_pred cceeeccCch--HhHHHHHH-hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhc
Confidence 4555432 23222211 123 448999999999999987 3348999999999999999999
Q ss_pred ccccCCCcceEEEEECCCchHHHHH
Q 008207 449 RTGRAGNTGVAVMLYDPRKSSVSKI 473 (574)
Q Consensus 449 R~gR~g~~G~~i~l~~~~~~~~~~i 473 (574)
|+||.|.+|.+.+|++-.+..+..+
T Consensus 530 RaGRQGDpGss~f~lSleDdl~~~f 554 (764)
T PRK12326 530 RAGRQGDPGSSVFFVSLEDDVVAAN 554 (764)
T ss_pred ccccCCCCCceeEEEEcchhHHHhc
Confidence 9999999999999988775555444
No 116
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.88 E-value=1.2e-20 Score=202.45 Aligned_cols=316 Identities=24% Similarity=0.336 Sum_probs=214.0
Q ss_pred CCCcHHHHHHHHHHhcC----CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHH
Q 008207 130 ESLFPIQAMTFDMVLDG----SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il~~----~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~ 205 (574)
..+.+-|..++..+... +..++.+.||||||-+|+-.+-..+..++ ++|||+|-..|-.|+..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gk-------------qvLvLVPEI~Ltpq~~~ 263 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGK-------------QVLVLVPEIALTPQLLA 263 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCC-------------EEEEEeccccchHHHHH
Confidence 36678899999998765 67999999999999999988888887764 49999999999999999
Q ss_pred HHHHhhCCCCceEEEEeCCc----chHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhc---CC-
Q 008207 206 DFDVYGGAVGLTSCCLYGGA----PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR---MG- 277 (574)
Q Consensus 206 ~~~~~~~~~~~~~~~~~gg~----~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~---~~- 277 (574)
.|+..+. .++..++++. .+..+.+.......|+|||-..+. ..+.++.+|||||=|.-.- .+
T Consensus 264 rf~~rFg---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~p 333 (730)
T COG1198 264 RFKARFG---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGP 333 (730)
T ss_pred HHHHHhC---CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCC
Confidence 9975432 4445555544 455556666788999999987773 4688999999999995421 11
Q ss_pred --cHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhh-----h
Q 008207 278 --FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR-----S 350 (574)
Q Consensus 278 --~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~-----~ 350 (574)
...++........ ++++|+-|||.+-+-...+ ....+..+.+.........+.+.-+......... .
T Consensus 334 rYhARdvA~~Ra~~~---~~pvvLgSATPSLES~~~~---~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~ 407 (730)
T COG1198 334 RYHARDVAVLRAKKE---NAPVVLGSATPSLESYANA---ESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSP 407 (730)
T ss_pred CcCHHHHHHHHHHHh---CCCEEEecCCCCHHHHHhh---hcCceEEEEccccccccCCCcceEEeccccccccCccCCH
Confidence 3334444444443 5789999999775433332 2233455555544432223333333222211111 2
Q ss_pred hhhhHHHHhhcCCCeEEEEecChHHH------------------------------------------------------
Q 008207 351 QVIPDIIRCYSSGGRTIIFTETKESA------------------------------------------------------ 376 (574)
Q Consensus 351 ~~l~~ll~~~~~~~~~lVF~~t~~~~------------------------------------------------------ 376 (574)
.++..+-.....+.++|+|+|.+.-+
T Consensus 408 ~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~ 487 (730)
T COG1198 408 ALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLR 487 (730)
T ss_pred HHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeE
Confidence 34444444556778888888854433
Q ss_pred ----------HHHHHhCCC--CccccccCCHHH--HHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEeCCC-----
Q 008207 377 ----------SQLADLLPG--ARALHGDIQQSQ--REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP----- 437 (574)
Q Consensus 377 ----------~~l~~~l~~--~~~lh~~~~~~~--r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p----- 437 (574)
+.|...|.. +..+.++.+... -...+..|.+|+.+|||.|.+++.|.|+|++++|...|..
T Consensus 488 ~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~ 567 (730)
T COG1198 488 AVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGS 567 (730)
T ss_pred EecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcC
Confidence 444445543 334555554433 3577999999999999999999999999999998755532
Q ss_pred -------CCHhHHHHHhcccccCCCcceEEE-EECCCchHHHHHH
Q 008207 438 -------RDVEAYIHRSGRTGRAGNTGVAVM-LYDPRKSSVSKIE 474 (574)
Q Consensus 438 -------~s~~~yiqr~GR~gR~g~~G~~i~-l~~~~~~~~~~i~ 474 (574)
+....+.|-+|||||.+.+|.+++ -+.|+...+..+.
T Consensus 568 ~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~ 612 (730)
T COG1198 568 PDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALK 612 (730)
T ss_pred CCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHH
Confidence 135678999999999988887754 4555544444443
No 117
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.88 E-value=3.1e-21 Score=199.52 Aligned_cols=317 Identities=21% Similarity=0.308 Sum_probs=217.0
Q ss_pred CCCcHHHHHHHHHHh----cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHH
Q 008207 130 ESLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il----~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~ 205 (574)
..+++||.+.+.++. +|-+.|+...+|-|||+. .+.++..+...... .+ -.||+||...|.+ |.+
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~~--------~G-PfLVi~P~StL~N-W~~ 234 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKGI--------PG-PFLVIAPKSTLDN-WMN 234 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcCC--------CC-CeEEEeeHhhHHH-HHH
Confidence 378999999998865 678899999999999986 33344444332110 11 2699999977765 778
Q ss_pred HHHHhhCCCCceEEEEeCCcchHHHHH---HhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHH
Q 008207 206 DFDVYGGAVGLTSCCLYGGAPYHAQEF---KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282 (574)
Q Consensus 206 ~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~ 282 (574)
+|++|+ +++++.+++|......... ......+|+|+|++..+.- +..+.--.++|+||||||++-+.. ..+
T Consensus 235 Ef~rf~--P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~--s~L 308 (971)
T KOG0385|consen 235 EFKRFT--PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEK--SKL 308 (971)
T ss_pred HHHHhC--CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchh--hHH
Confidence 899888 5688899999875433322 1234789999999998764 223344468999999999997653 445
Q ss_pred HHHHHhccCccCceEEEEeccC----------------ch----------hH------------HH---HHHHhc-----
Q 008207 283 ELILGKVEDANKVQTLLFSATL----------------PS----------WV------------KH---ISTKFL----- 316 (574)
Q Consensus 283 ~~il~~l~~~~~~q~ll~SAT~----------------~~----------~~------------~~---~~~~~~----- 316 (574)
..++..+.. ...+++|+|. |. |. .. +.+-|+
T Consensus 309 ~~~lr~f~~---~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K 385 (971)
T KOG0385|consen 309 SKILREFKT---DNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIK 385 (971)
T ss_pred HHHHHHhcc---cceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHH
Confidence 566766654 3468888982 10 00 00 000000
Q ss_pred ----c--cCCeEEEE-ecCc---------------------c-----------cccccceeEEEEe--------------
Q 008207 317 ----K--SDKKTIDL-VGNE---------------------K-----------MKASTNVRHIVLP-------------- 343 (574)
Q Consensus 317 ----~--~~~~~i~~-~~~~---------------------~-----------~~~~~~i~~~~~~-------------- 343 (574)
. .+...+.+ .+-. . +.......|-|+.
T Consensus 386 ~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdeh 465 (971)
T KOG0385|consen 386 SDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEH 465 (971)
T ss_pred HhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchH
Confidence 0 00000100 0000 0 0000011111111
Q ss_pred -CCchhhhhhhhHHHHhh-cCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCC---CccEEE
Q 008207 344 -CSSSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG---KFMTLV 414 (574)
Q Consensus 344 -~~~~~~~~~l~~ll~~~-~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g---~~~vLv 414 (574)
+..+.|..+|..+|..+ ..|.+||||.+.....+-|.+++. .+..+.|.++..+|...++.|... .+-+|+
T Consensus 466 Lv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlL 545 (971)
T KOG0385|consen 466 LVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLL 545 (971)
T ss_pred HHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEE
Confidence 12345666777776543 477899999999998888888765 566799999999999999999763 566799
Q ss_pred EeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcc--eEEEEECCC
Q 008207 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG--VAVMLYDPR 466 (574)
Q Consensus 415 aTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G--~~i~l~~~~ 466 (574)
+|.+.+-|||+...++||.||-.|+|..-+|..-||+|.|+.. .+|.|++.+
T Consensus 546 STRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 546 STRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred eccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 9999999999999999999999999999999999999999865 568889887
No 118
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.88 E-value=8.7e-21 Score=207.29 Aligned_cols=135 Identities=27% Similarity=0.385 Sum_probs=114.4
Q ss_pred hhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCC
Q 008207 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426 (574)
Q Consensus 351 ~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~ 426 (574)
.++..+......+.++||||+|+..++.|+..|. .+..+||++++.+|..++..|+.|.+.|||||+++++|+|+|
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp 513 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIP 513 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCcccc
Confidence 4444444445578899999999999999999998 456799999999999999999999999999999999999999
Q ss_pred CCcEEEEeCC-----CCCHhHHHHHhcccccCCCcceEEEEECCC----------chHHHHHHHHhCCcceecCC
Q 008207 427 DVQLIIQCEP-----PRDVEAYIHRSGRTGRAGNTGVAVMLYDPR----------KSSVSKIERESGVKFEHISA 486 (574)
Q Consensus 427 ~v~~VI~~d~-----p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~----------~~~~~~i~~~~~~~~~~~~~ 486 (574)
++++||++|. |.+..+|+||+|||||. ..|.|++|++.. ....+.++..++.+...++.
T Consensus 514 ~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 587 (652)
T PRK05298 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPK 587 (652)
T ss_pred CCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCCh
Confidence 9999999885 78999999999999996 799999999842 44556677766666655443
No 119
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.87 E-value=3.2e-21 Score=203.53 Aligned_cols=159 Identities=19% Similarity=0.110 Sum_probs=114.6
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHh
Q 008207 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (574)
Q Consensus 131 ~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (574)
.|..||.+.+..+-.+..++++|||.+|||++-...+=..+..... -.+|+++||++|+.|+...+...
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~-----------~VVIyvaPtKaLVnQvsa~VyaR 579 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDS-----------DVVIYVAPTKALVNQVSANVYAR 579 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCC-----------CEEEEecchHHHhhhhhHHHHHh
Confidence 5778999999999999999999999999999755555444444332 24899999999999999887543
Q ss_pred h-CCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhc---CCccCCCceEEEecCchhhhcCCcHHHHHHHH
Q 008207 211 G-GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER---GNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286 (574)
Q Consensus 211 ~-~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~---~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il 286 (574)
. ...-.+...+.|.....-+.. .-.|+|+|+-|+.+-.+|.. ...+...++++|+||+|.+.+..-.--++.++
T Consensus 580 F~~~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll 657 (1330)
T KOG0949|consen 580 FDTKTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLL 657 (1330)
T ss_pred hccCccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHH
Confidence 3 333344445555544333222 12499999999999888876 34568899999999999986543222233444
Q ss_pred HhccCccCceEEEEeccCch
Q 008207 287 GKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 287 ~~l~~~~~~q~ll~SAT~~~ 306 (574)
..+ ++.++++|||+.+
T Consensus 658 ~li----~CP~L~LSATigN 673 (1330)
T KOG0949|consen 658 LLI----PCPFLVLSATIGN 673 (1330)
T ss_pred Hhc----CCCeeEEecccCC
Confidence 333 5789999999754
No 120
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=2.5e-20 Score=193.76 Aligned_cols=324 Identities=16% Similarity=0.247 Sum_probs=213.6
Q ss_pred cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh----cCCcEEEEccCCChhHHHhHHHHHHHHhCC-CCCCcccCCCCCCC
Q 008207 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNG-PTKASKKTGYGRAP 188 (574)
Q Consensus 114 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il----~~~dvi~~a~TGsGKTla~~lpil~~l~~~-~~~~~~~~~~~~~~ 188 (574)
|.++-.+ +..++|+|++++.++. ++.--|+-..+|-|||...+.. |..+... ... -
T Consensus 196 ~~vPg~I--------~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisF-LaaL~~S~k~~----------~ 256 (923)
T KOG0387|consen 196 FKVPGFI--------WSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISF-LAALHHSGKLT----------K 256 (923)
T ss_pred ccccHHH--------HHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHH-HHHHhhccccc----------C
Confidence 5666665 3467899999999976 4667899999999999853222 2222222 111 1
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchH---------HHHH----HhcCCCcEEEEChHHHHHhHhcC
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYH---------AQEF----KLKKGIDVVIGTPGRIKDHIERG 255 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~---------~~~~----~l~~~~~IlV~Tp~~l~~~l~~~ 255 (574)
.+|||||. .+..||..+|..|.. .++|..++|..+.. .... ......+|+|+|+..+.- ...
T Consensus 257 paLIVCP~-Tii~qW~~E~~~w~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d 331 (923)
T KOG0387|consen 257 PALIVCPA-TIIHQWMKEFQTWWP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGD 331 (923)
T ss_pred ceEEEccH-HHHHHHHHHHHHhCc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCc
Confidence 38999999 888999999999874 57777777765521 1111 112356899999988843 222
Q ss_pred CccCCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCc-hhHHHHH----------------------
Q 008207 256 NIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP-SWVKHIS---------------------- 312 (574)
Q Consensus 256 ~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~-~~~~~~~---------------------- 312 (574)
.+.-..+.|+|+||.|++-+.. .++...+..++ ..+.|++|+|.= +.+.++.
T Consensus 332 ~l~~~~W~y~ILDEGH~IrNpn--s~islackki~---T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~ 406 (923)
T KOG0387|consen 332 DLLGILWDYVILDEGHRIRNPN--SKISLACKKIR---TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFE 406 (923)
T ss_pred ccccccccEEEecCcccccCCc--cHHHHHHHhcc---ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhh
Confidence 3334457999999999986554 34444445554 457788899821 1010000
Q ss_pred ------------------------------HHhc-------------c-cCCeEEEEec---------------------
Q 008207 313 ------------------------------TKFL-------------K-SDKKTIDLVG--------------------- 327 (574)
Q Consensus 313 ------------------------------~~~~-------------~-~~~~~i~~~~--------------------- 327 (574)
+-|+ . +...++.+.-
T Consensus 407 ~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ 486 (923)
T KOG0387|consen 407 HPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKIL 486 (923)
T ss_pred hheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHH
Confidence 0000 0 0000000000
Q ss_pred -Ccc--------cccccceeEEE--------------EeCCchhhhhhhhHHHHh-hcCCCeEEEEecChHHHHHHHHhC
Q 008207 328 -NEK--------MKASTNVRHIV--------------LPCSSSARSQVIPDIIRC-YSSGGRTIIFTETKESASQLADLL 383 (574)
Q Consensus 328 -~~~--------~~~~~~i~~~~--------------~~~~~~~~~~~l~~ll~~-~~~~~~~lVF~~t~~~~~~l~~~l 383 (574)
+.. .....+-..++ -......+..++..++.. ...+.++|+|..++...+-|..+|
T Consensus 487 ng~~~~l~Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL 566 (923)
T KOG0387|consen 487 NGKRNCLSGIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFL 566 (923)
T ss_pred cCCccceechHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHH
Confidence 000 00000000000 011123456667777654 357789999999999999999888
Q ss_pred C-----CCccccccCCHHHHHHHHHHHhCCCc--cEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCc
Q 008207 384 P-----GARALHGDIQQSQREVTLAGFRSGKF--MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNT 456 (574)
Q Consensus 384 ~-----~~~~lh~~~~~~~r~~~~~~F~~g~~--~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~ 456 (574)
. .+..+.|..+...|..++++|.++.. -+|++|.+.+-|+|+-+.+-||.||+.|+|++-.|..-||-|.|++
T Consensus 567 ~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQk 646 (923)
T KOG0387|consen 567 RRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQK 646 (923)
T ss_pred HhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCc
Confidence 7 34568899999999999999997643 4688999999999999999999999999999999999999999985
Q ss_pred c--eEEEEECCC
Q 008207 457 G--VAVMLYDPR 466 (574)
Q Consensus 457 G--~~i~l~~~~ 466 (574)
. .+|.|++..
T Consensus 647 kdV~VYRL~t~g 658 (923)
T KOG0387|consen 647 KDVVVYRLMTAG 658 (923)
T ss_pred cceEEEEEecCC
Confidence 4 347888876
No 121
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.86 E-value=6.6e-20 Score=183.30 Aligned_cols=163 Identities=24% Similarity=0.313 Sum_probs=128.2
Q ss_pred CceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhhhhhhhHHHHhhcCCCeEEEEecCh
Q 008207 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETK 373 (574)
Q Consensus 294 ~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~ 373 (574)
..|+++.|||..++-.... ...++...-.......+. +.+........+++..+......+.++||-+-|+
T Consensus 386 ~~q~i~VSATPg~~E~e~s------~~~vveQiIRPTGLlDP~---ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTK 456 (663)
T COG0556 386 IPQTIYVSATPGDYELEQS------GGNVVEQIIRPTGLLDPE---IEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTK 456 (663)
T ss_pred cCCEEEEECCCChHHHHhc------cCceeEEeecCCCCCCCc---eeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehH
Confidence 3699999999987654432 222232222211111111 1223334455667777777777889999999999
Q ss_pred HHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEeC-----CCCCHhHHH
Q 008207 374 ESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCE-----PPRDVEAYI 444 (574)
Q Consensus 374 ~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d-----~p~s~~~yi 444 (574)
+.|+.|.++|. ++.++|++...-+|..+++..+.|.++|||.-+.+-.|||+|.|++|..+| +.+|-.+.|
T Consensus 457 kmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLI 536 (663)
T COG0556 457 KMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLI 536 (663)
T ss_pred HHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHH
Confidence 99999999998 678999999999999999999999999999999999999999999999887 567899999
Q ss_pred HHhcccccCCCcceEEEEECCC
Q 008207 445 HRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 445 qr~GR~gR~g~~G~~i~l~~~~ 466 (574)
|-+|||+|. -.|.++++.+.-
T Consensus 537 QtIGRAARN-~~GkvIlYAD~i 557 (663)
T COG0556 537 QTIGRAARN-VNGKVILYADKI 557 (663)
T ss_pred HHHHHHhhc-cCCeEEEEchhh
Confidence 999999997 489999988865
No 122
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=8.2e-20 Score=197.41 Aligned_cols=326 Identities=20% Similarity=0.276 Sum_probs=205.2
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHH
Q 008207 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (574)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (574)
.|. .|+++|...--.+ .+--|+...||+|||+++.+|++.....+.. +.|++||.-||.|-+++
T Consensus 79 lGm-~~ydVQliGg~~L--h~G~iaEM~TGEGKTLvA~l~a~l~al~G~~-------------VhvvT~ndyLA~RD~e~ 142 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTL--HEGKIAEMRTGEGKTLVGTLAVYLNALSGKG-------------VHVVTVNDYLARRDANW 142 (913)
T ss_pred hCC-CcchhHHHhhhHh--ccCccccccCCCCChHHHHHHHHHHHHcCCC-------------EEEEeCCHHHHHHHHHH
Confidence 353 7777786554444 3456789999999999999999877776543 89999999999999999
Q ss_pred HHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHH-HHhHhcC------CccCCCceEEEecCchhhhc----
Q 008207 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG------NIDLSSLKFRVLDEADEMLR---- 275 (574)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~~------~~~l~~~~~lVlDEah~~l~---- 275 (574)
+..+....|+++.++.++.+......... +||+++|..-| .|+|..+ ....+.+.++||||+|.+|=
T Consensus 143 m~~l~~~lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEAr 220 (913)
T PRK13103 143 MRPLYEFLGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEAR 220 (913)
T ss_pred HHHHhcccCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccC
Confidence 99999999999999998887654444433 99999999987 3333221 12247899999999999760
Q ss_pred ------------CCcHHHHHHHHHhccCc-----------------cCceEEEEeccCchhHHH----------------
Q 008207 276 ------------MGFVEDVELILGKVEDA-----------------NKVQTLLFSATLPSWVKH---------------- 310 (574)
Q Consensus 276 ------------~~~~~~~~~il~~l~~~-----------------~~~q~ll~SAT~~~~~~~---------------- 310 (574)
...+..+..+...+... .+.+.+.+|-.--..+..
T Consensus 221 tPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~ 300 (913)
T PRK13103 221 TPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYS 300 (913)
T ss_pred CceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccC
Confidence 01222333333333110 011112211110000000
Q ss_pred -------------H-HHHhcccCCeEE------EEecCcc----------------------------------------
Q 008207 311 -------------I-STKFLKSDKKTI------DLVGNEK---------------------------------------- 330 (574)
Q Consensus 311 -------------~-~~~~~~~~~~~i------~~~~~~~---------------------------------------- 330 (574)
+ +...+..+..++ .+++...
T Consensus 301 ~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~Qnf 380 (913)
T PRK13103 301 AHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNY 380 (913)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHH
Confidence 0 001111111111 1111000
Q ss_pred ------------------------------------cccccceeEEEEeCCchhhhhhhhHHHHhhcCCCeEEEEecChH
Q 008207 331 ------------------------------------MKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKE 374 (574)
Q Consensus 331 ------------------------------------~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~ 374 (574)
+.........++......-..++..+...+..+.||||-+.|.+
T Consensus 381 Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe 460 (913)
T PRK13103 381 FRLYNKLSGMTGTADTEAFEFRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIE 460 (913)
T ss_pred HHhcchhccCCCCCHHHHHHHHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHH
Confidence 00000111111112222223455566667778999999999999
Q ss_pred HHHHHHHhCCCCccccccCC--HHHHHHHHHHHhCC-CccEEEEeccccccCCCC-------------------------
Q 008207 375 SASQLADLLPGARALHGDIQ--QSQREVTLAGFRSG-KFMTLVATNVAARGLDIN------------------------- 426 (574)
Q Consensus 375 ~~~~l~~~l~~~~~lh~~~~--~~~r~~~~~~F~~g-~~~vLvaTd~~~~Gldi~------------------------- 426 (574)
..+.|+.+|.....-|--+. +..++.-+-+ ..| .-.|.|||++|+||-||.
T Consensus 461 ~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa-~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~ 539 (913)
T PRK13103 461 TSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIA-QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKA 539 (913)
T ss_pred HHHHHHHHHHHcCCcHHHhccccchhHHHHHH-cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHH
Confidence 99999999985444343222 1233322222 234 458999999999999995
Q ss_pred ------------CCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCCchHHH
Q 008207 427 ------------DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS 471 (574)
Q Consensus 427 ------------~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~~~~~~ 471 (574)
+==|||-...|.|..---|-.||+||.|.+|.+-+|++-.+..++
T Consensus 540 ~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~Lmr 596 (913)
T PRK13103 540 DWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSLMR 596 (913)
T ss_pred HHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHHH
Confidence 334899999999999999999999999999999888887644443
No 123
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.84 E-value=1.8e-19 Score=169.15 Aligned_cols=179 Identities=41% Similarity=0.620 Sum_probs=148.1
Q ss_pred HCCCCCCcHHHHHHHHHHhcC-CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHH
Q 008207 126 SKGIESLFPIQAMTFDMVLDG-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (574)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~il~~-~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (574)
..++.+++++|.++++.+..+ +.+++.++||||||.+++.+++..+.... ..++||++|++.++.|+.
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-----------~~~~l~~~p~~~~~~~~~ 71 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-----------GKRVLVLVPTRELAEQWA 71 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-----------CCcEEEEeCCHHHHHHHH
Confidence 357889999999999999988 99999999999999999999998887642 124999999999999999
Q ss_pred HHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCC-cEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHH
Q 008207 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGI-DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283 (574)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~-~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~ 283 (574)
..+..+............++............+. +|+++|++.+.+.+.........++++|+||||.+....+...+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~ 151 (201)
T smart00487 72 EELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLE 151 (201)
T ss_pred HHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHH
Confidence 9998877655545555666655444444444445 999999999999998877778889999999999997657788888
Q ss_pred HHHHhccCccCceEEEEeccCchhHHHHHHHhcc
Q 008207 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLK 317 (574)
Q Consensus 284 ~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~ 317 (574)
.++..++. ..+++++|||++.........++.
T Consensus 152 ~~~~~~~~--~~~~v~~saT~~~~~~~~~~~~~~ 183 (201)
T smart00487 152 KLLKLLPK--NVQLLLLSATPPEEIENLLELFLN 183 (201)
T ss_pred HHHHhCCc--cceEEEEecCCchhHHHHHHHhcC
Confidence 88888844 678999999999988888888874
No 124
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=2.1e-18 Score=184.66 Aligned_cols=325 Identities=21% Similarity=0.265 Sum_probs=207.3
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHH
Q 008207 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (574)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (574)
.|+ .|+++|.-+--.+..|+ |+...||-|||+++.+|++-..+.+.. |-|++..--||..=+++
T Consensus 75 lG~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~Gkg-------------VhVVTvNdYLA~RDae~ 138 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTGKG-------------VIVSTVNEYLAERDAEE 138 (925)
T ss_pred hCC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcCCc-------------eEEEecchhhhhhhHHH
Confidence 355 88899987776666654 799999999999999999766555543 78999999999999999
Q ss_pred HHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHH-HhHhcC------CccCCCceEEEecCchhhhc----
Q 008207 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIK-DHIERG------NIDLSSLKFRVLDEADEMLR---- 275 (574)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~-~~l~~~------~~~l~~~~~lVlDEah~~l~---- 275 (574)
+..+..++|++|+++..+.+...... ...+||+++|..-|- |+|... ....+.+.+.||||+|.+|=
T Consensus 139 mg~vy~fLGLsvG~i~~~~~~~~rr~--aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEAr 216 (925)
T PRK12903 139 MGKVFNFLGLSVGINKANMDPNLKRE--AYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAK 216 (925)
T ss_pred HHHHHHHhCCceeeeCCCCChHHHHH--hccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccC
Confidence 99999999999999988776654333 345999999998873 333221 12356789999999999760
Q ss_pred ------------CCcHHHHHHHHHhccCc-----cCceEEEEeccCc---------------------hhHHHHHH--Hh
Q 008207 276 ------------MGFVEDVELILGKVEDA-----NKVQTLLFSATLP---------------------SWVKHIST--KF 315 (574)
Q Consensus 276 ------------~~~~~~~~~il~~l~~~-----~~~q~ll~SAT~~---------------------~~~~~~~~--~~ 315 (574)
..++..+..+...+... .+.+.+.++..-- .++....+ .+
T Consensus 217 TPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~l 296 (925)
T PRK12903 217 TPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKV 296 (925)
T ss_pred CcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHH
Confidence 01333344444433220 0112233332100 00100000 01
Q ss_pred cccCCeEE------EEecCcc-----------------------------------------------------------
Q 008207 316 LKSDKKTI------DLVGNEK----------------------------------------------------------- 330 (574)
Q Consensus 316 ~~~~~~~i------~~~~~~~----------------------------------------------------------- 330 (574)
+..+..++ .+++...
T Consensus 297 f~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~ 376 (925)
T PRK12903 297 MKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQ 376 (925)
T ss_pred HhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHH
Confidence 11111111 0110000
Q ss_pred -cccccceeEEE---------------EeCCchhhhh-hhhHHHHhhcCCCeEEEEecChHHHHHHHHhCCCCccccccC
Q 008207 331 -MKASTNVRHIV---------------LPCSSSARSQ-VIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDI 393 (574)
Q Consensus 331 -~~~~~~i~~~~---------------~~~~~~~~~~-~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~~~~lh~~~ 393 (574)
.....++.... +......+.. ++..+...+..+.|+||.|.|.+.++.|+.+|....+-|.-+
T Consensus 377 Ef~~iY~l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vL 456 (925)
T PRK12903 377 EFIDIYNMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVL 456 (925)
T ss_pred HHHHHhCCCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceee
Confidence 00000011111 1112233333 445555567789999999999999999999998555545444
Q ss_pred C--HHHHHHHHHHHhCC-CccEEEEeccccccCCCCCCc--------EEEEeCCCCCHhHHHHHhcccccCCCcceEEEE
Q 008207 394 Q--QSQREVTLAGFRSG-KFMTLVATNVAARGLDINDVQ--------LIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462 (574)
Q Consensus 394 ~--~~~r~~~~~~F~~g-~~~vLvaTd~~~~Gldi~~v~--------~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l 462 (574)
. +.+++..+-. ..| .-.|.|||++|+||.||.--. |||....|.|..---|..||+||.|.+|.+-+|
T Consensus 457 NAk~~e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 457 NAKQNAREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred cccchhhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 4 2334433332 344 558999999999999997332 999999999999999999999999999999888
Q ss_pred ECCCchHH
Q 008207 463 YDPRKSSV 470 (574)
Q Consensus 463 ~~~~~~~~ 470 (574)
++-.+..+
T Consensus 536 lSLeD~L~ 543 (925)
T PRK12903 536 ISLDDQLF 543 (925)
T ss_pred EecchHHH
Confidence 87664333
No 125
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.81 E-value=8.5e-20 Score=197.55 Aligned_cols=312 Identities=17% Similarity=0.272 Sum_probs=209.4
Q ss_pred CCCcHHHHHHHHHHh----cCCcEEEEccCCChhHH---HhHHHHHHHH-hCCCCCCcccCCCCCCCeEEEEeCcHHHHH
Q 008207 130 ESLFPIQAMTFDMVL----DGSDLVGRARTGQGKTL---AFVLPILESL-TNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il----~~~dvi~~a~TGsGKTl---a~~lpil~~l-~~~~~~~~~~~~~~~~~~~Lil~PtreLa~ 201 (574)
.+++.||.+.+.+++ .++++|+....|.|||+ +|+-.+++.. ..++ .|||+|...+ .
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gp--------------flvvvplst~-~ 433 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGP--------------FLVVVPLSTI-T 433 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCC--------------eEEEeehhhh-H
Confidence 689999999999876 68999999999999997 4555555544 2222 6999999554 4
Q ss_pred HHHHHHHHhhCCCCceEEEEeCCcchHHHHHHh----cC-----CCcEEEEChHHHHHhHhcCCccCCCceEEEecCchh
Q 008207 202 QVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KK-----GIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADE 272 (574)
Q Consensus 202 Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~-----~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~ 272 (574)
.|.++|..|. .+++++++|.......++.. .. .++++++|++.++.--. .+.--.+.++++||||+
T Consensus 434 ~W~~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahr 508 (1373)
T KOG0384|consen 434 AWEREFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHR 508 (1373)
T ss_pred HHHHHHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhh
Confidence 5778888886 58888888876554444332 12 48999999999865322 12223468999999999
Q ss_pred hhcCCcHHHHHHHHHhccCccCceEEEEeccCc-hhHHHHHHHh--c---------------------------------
Q 008207 273 MLRMGFVEDVELILGKVEDANKVQTLLFSATLP-SWVKHISTKF--L--------------------------------- 316 (574)
Q Consensus 273 ~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~-~~~~~~~~~~--~--------------------------------- 316 (574)
+-+.. ..+-..+..+.. -..+++|+|.- +.+.++.... +
T Consensus 509 LkN~~--~~l~~~l~~f~~---~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~ 583 (1373)
T KOG0384|consen 509 LKNDE--SKLYESLNQFKM---NHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPF 583 (1373)
T ss_pred cCchH--HHHHHHHHHhcc---cceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHH
Confidence 86432 122222333332 24677888831 1122211100 0
Q ss_pred --c--------c----CCeEEEEecCc--c-------------------ccc----------ccceeEEEEeCC------
Q 008207 317 --K--------S----DKKTIDLVGNE--K-------------------MKA----------STNVRHIVLPCS------ 345 (574)
Q Consensus 317 --~--------~----~~~~i~~~~~~--~-------------------~~~----------~~~i~~~~~~~~------ 345 (574)
+ . ...++.+.-.. . ... ...-.|-|+.-.
T Consensus 584 ~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~ 663 (1373)
T KOG0384|consen 584 LLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKIL 663 (1373)
T ss_pred HHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHH
Confidence 0 0 00011111000 0 000 000011111110
Q ss_pred -----------------chhhhhhhhHHHHhh-cCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHH
Q 008207 346 -----------------SSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLA 403 (574)
Q Consensus 346 -----------------~~~~~~~l~~ll~~~-~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~ 403 (574)
.+.|.-+|..||-.+ ..|.+||||.+.....+-|+++|. ....|.|.+..+.|+..++
T Consensus 664 ~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AID 743 (1373)
T KOG0384|consen 664 GDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAID 743 (1373)
T ss_pred HhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHH
Confidence 111222333344333 356899999999999999999997 5667999999999999999
Q ss_pred HHhC---CCccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcce--EEEEECCC
Q 008207 404 GFRS---GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV--AVMLYDPR 466 (574)
Q Consensus 404 ~F~~---g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~--~i~l~~~~ 466 (574)
.|.. ..+.+|+||-+.+-|||+...+.||.||-.|+|+.-+|.--||+|.|+... +|.|++.+
T Consensus 744 hFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 744 HFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred hccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 9975 578899999999999999999999999999999999999999999999764 59999987
No 126
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.81 E-value=6.9e-19 Score=189.86 Aligned_cols=332 Identities=16% Similarity=0.218 Sum_probs=221.8
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHH
Q 008207 131 SLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (574)
Q Consensus 131 ~~~~~Q~~~i~~il----~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (574)
.++.||++.+.++. -+-+.|+|..+|-|||+...-.+.....+.+... ......-.|||||. .|+--|..+
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~----~e~~~~PSLIVCPs-TLtGHW~~E 1049 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSES----SEFNRLPSLIVCPS-TLTGHWKSE 1049 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccc----hhhccCCeEEECCc-hhhhHHHHH
Confidence 45678999999865 2458999999999999975554444444432211 11223338999998 899999999
Q ss_pred HHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHH
Q 008207 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286 (574)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il 286 (574)
+.+|+.. +++....|+.......+.--++.+|+|++++.+.+-+.. +.-..+.|.|+||-|-|-+. ...+..-.
T Consensus 1050 ~~kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kav 1123 (1549)
T KOG0392|consen 1050 VKKFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAV 1123 (1549)
T ss_pred HHHhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHH
Confidence 9999876 778888888776666666666789999999998743321 22334679999999977433 33344444
Q ss_pred HhccCccCceEEEEeccC--------------------------------------------------------------
Q 008207 287 GKVEDANKVQTLLFSATL-------------------------------------------------------------- 304 (574)
Q Consensus 287 ~~l~~~~~~q~ll~SAT~-------------------------------------------------------------- 304 (574)
+.+.. -..+++|+|.
T Consensus 1124 kqL~a---~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVL 1200 (1549)
T KOG0392|consen 1124 KQLRA---NHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVL 1200 (1549)
T ss_pred HHHhh---cceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHH
Confidence 44443 3568889991
Q ss_pred chhHHH---------------------------HHHHhcccCCeEEEEe--cCcc-ccc-ccc----e-------eE--E
Q 008207 305 PSWVKH---------------------------ISTKFLKSDKKTIDLV--GNEK-MKA-STN----V-------RH--I 340 (574)
Q Consensus 305 ~~~~~~---------------------------~~~~~~~~~~~~i~~~--~~~~-~~~-~~~----i-------~~--~ 340 (574)
|--+++ +.+.|.......+... +... ..+ ..+ + .| +
T Consensus 1201 PF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaL 1280 (1549)
T KOG0392|consen 1201 PFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPAL 1280 (1549)
T ss_pred HHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcce
Confidence 100111 1111110000000000 0000 000 000 0 00 0
Q ss_pred EEe----------------------CCchhhhhhhhHHHHhhc---------------CCCeEEEEecChHHHHHHHHhC
Q 008207 341 VLP----------------------CSSSARSQVIPDIIRCYS---------------SGGRTIIFTETKESASQLADLL 383 (574)
Q Consensus 341 ~~~----------------------~~~~~~~~~l~~ll~~~~---------------~~~~~lVF~~t~~~~~~l~~~l 383 (574)
... .....|..+|..++.... .+.++||||+-+...+-+.+-|
T Consensus 1281 vlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL 1360 (1549)
T KOG0392|consen 1281 VLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDL 1360 (1549)
T ss_pred eeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHH
Confidence 000 011334555666665332 2368999999999998888665
Q ss_pred C-----CCc--cccccCCHHHHHHHHHHHhCC-CccEEE-EeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCC
Q 008207 384 P-----GAR--ALHGDIQQSQREVTLAGFRSG-KFMTLV-ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454 (574)
Q Consensus 384 ~-----~~~--~lh~~~~~~~r~~~~~~F~~g-~~~vLv-aTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g 454 (574)
- .+. .+.|..++.+|.++.++|+++ .++||+ +|-+.+-|+|+-+.+.||+++-.|+|-.-.|..-||+|.|
T Consensus 1361 ~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIG 1440 (1549)
T KOG0392|consen 1361 FKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIG 1440 (1549)
T ss_pred hhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhc
Confidence 4 333 789999999999999999998 777755 6799999999999999999999999999999999999999
Q ss_pred CcceE--EEEECCC--chHHHHHHHH
Q 008207 455 NTGVA--VMLYDPR--KSSVSKIERE 476 (574)
Q Consensus 455 ~~G~~--i~l~~~~--~~~~~~i~~~ 476 (574)
++..+ |.|++.+ +..+..+++.
T Consensus 1441 QKrvVNVyRlItrGTLEEKVMgLQkF 1466 (1549)
T KOG0392|consen 1441 QKRVVNVYRLITRGTLEEKVMGLQKF 1466 (1549)
T ss_pred CceeeeeeeehhcccHHHHHhhHHHH
Confidence 97754 8999988 7777777765
No 127
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.81 E-value=1.6e-17 Score=185.50 Aligned_cols=326 Identities=19% Similarity=0.229 Sum_probs=200.8
Q ss_pred CCCCCCcHHHHHHHHH----HhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHH
Q 008207 127 KGIESLFPIQAMTFDM----VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ 202 (574)
Q Consensus 127 ~g~~~~~~~Q~~~i~~----il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Q 202 (574)
.|| .+++-|.+.... +..++++++.|+||+|||++|++|++.... +.+++|++||++|+.|
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~~--------------~~~vvI~t~T~~Lq~Q 306 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQSD--------------QRQIIVSVPTKILQDQ 306 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhcC--------------CCcEEEEeCcHHHHHH
Confidence 455 689999885544 346788999999999999999999886531 2359999999999999
Q ss_pred H-HHHHHHhhCCCCceEEEEeCCcchHHHH---HHh--------------------------------------------
Q 008207 203 V-HEDFDVYGGAVGLTSCCLYGGAPYHAQE---FKL-------------------------------------------- 234 (574)
Q Consensus 203 v-~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l-------------------------------------------- 234 (574)
+ .+.+..++...++++.++.|+.++--.. ..+
T Consensus 307 l~~~~i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i 386 (820)
T PRK07246 307 IMAEEVKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQL 386 (820)
T ss_pred HHHHHHHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHh
Confidence 9 5778888877888888888876431100 000
Q ss_pred ------------------------cCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCC-----c-------
Q 008207 235 ------------------------KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG-----F------- 278 (574)
Q Consensus 235 ------------------------~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~-----~------- 278 (574)
...+||+|+....|+.++..+. .+...+++||||||++.+.. .
T Consensus 387 ~~~~~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~ 465 (820)
T PRK07246 387 KHDGNLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSF 465 (820)
T ss_pred hccCCCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHH
Confidence 0127999999998888775544 36789999999999974210 0
Q ss_pred HHHH-------------------------------------------HH---H------------HHhc--cC-------
Q 008207 279 VEDV-------------------------------------------EL---I------------LGKV--ED------- 291 (574)
Q Consensus 279 ~~~~-------------------------------------------~~---i------------l~~l--~~------- 291 (574)
...+ .. . ...+ ..
T Consensus 466 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~ 545 (820)
T PRK07246 466 LQTIQKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLES 545 (820)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 0000 00 0 0000 00
Q ss_pred -------------------------ccCceEEEEeccCc--hhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEe-
Q 008207 292 -------------------------ANKVQTLLFSATLP--SWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP- 343 (574)
Q Consensus 292 -------------------------~~~~q~ll~SAT~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~- 343 (574)
.....+|++|||++ +.. .+....--.......+. .....-..+++.
T Consensus 546 ~~~~~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~~~~lGl~~~~~~~~~-----~~~~~~~~~~i~~ 619 (820)
T PRK07246 546 EKQSEKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRV-SLADLLGFEEYLFHKIE-----KDKKQDQLVVVDQ 619 (820)
T ss_pred cCCCCcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-cHHHHcCCCccceecCC-----CChHHccEEEeCC
Confidence 00146788899985 222 23222211111111110 000111112221
Q ss_pred -CC------chhhhhhhhHHH-HhhcCCCeEEEEecChHHHHHHHHhCCC---CccccccCCHHHHHHHHHHHhCCCccE
Q 008207 344 -CS------SSARSQVIPDII-RCYSSGGRTIIFTETKESASQLADLLPG---ARALHGDIQQSQREVTLAGFRSGKFMT 412 (574)
Q Consensus 344 -~~------~~~~~~~l~~ll-~~~~~~~~~lVF~~t~~~~~~l~~~l~~---~~~lh~~~~~~~r~~~~~~F~~g~~~v 412 (574)
.+ .......+...+ .....+++++|+++|.+..+.++..|.. .....|... .|.+++++|+++.-.|
T Consensus 620 ~~p~~~~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~l~Qg~~~--~~~~l~~~F~~~~~~v 697 (820)
T PRK07246 620 DMPLVTETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSHLAQEKNG--TAYNIKKRFDRGEQQI 697 (820)
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcEEEeCCCc--cHHHHHHHHHcCCCeE
Confidence 11 111121222222 2224578999999999999999888752 112223221 3567899999998899
Q ss_pred EEEeccccccCCCCC--CcEEEEeCCCC----C--------------------------HhHHHHHhcccccCCC-cceE
Q 008207 413 LVATNVAARGLDIND--VQLIIQCEPPR----D--------------------------VEAYIHRSGRTGRAGN-TGVA 459 (574)
Q Consensus 413 LvaTd~~~~Gldi~~--v~~VI~~d~p~----s--------------------------~~~yiqr~GR~gR~g~-~G~~ 459 (574)
|++|+.+.+|||+|+ ...||...+|. + ...+.|-+||.-|... .| +
T Consensus 698 LlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~G-v 776 (820)
T PRK07246 698 LLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKS-A 776 (820)
T ss_pred EEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcE-E
Confidence 999999999999974 45566666552 2 2245799999999875 45 5
Q ss_pred EEEECCC---chHHHHHHHHh
Q 008207 460 VMLYDPR---KSSVSKIERES 477 (574)
Q Consensus 460 i~l~~~~---~~~~~~i~~~~ 477 (574)
+.+++++ ..+-+.+.+.+
T Consensus 777 v~ilD~R~~~k~Yg~~~l~sL 797 (820)
T PRK07246 777 VLILDRRILTKSYGKQILASL 797 (820)
T ss_pred EEEECCcccccHHHHHHHHhC
Confidence 6677776 33445555554
No 128
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.80 E-value=9.7e-18 Score=184.16 Aligned_cols=309 Identities=14% Similarity=0.113 Sum_probs=177.6
Q ss_pred CcHHHHHHHHHHh----c------CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHH
Q 008207 132 LFPIQAMTFDMVL----D------GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (574)
Q Consensus 132 ~~~~Q~~~i~~il----~------~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~ 201 (574)
+.++|..++..+. . .+..+++.+||||||++.+..+...+.. ...+++|||+|+++|..
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~-----------~~~~~vl~lvdR~~L~~ 307 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL-----------LKNPKVFFVVDRRELDY 307 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh-----------cCCCeEEEEECcHHHHH
Confidence 6788988887653 2 2579999999999999765554433321 23457999999999999
Q ss_pred HHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhc-CCCcEEEEChHHHHHhHhcC--CccCCCc-eEEEecCchhhhcCC
Q 008207 202 QVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK-KGIDVVIGTPGRIKDHIERG--NIDLSSL-KFRVLDEADEMLRMG 277 (574)
Q Consensus 202 Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~IlV~Tp~~l~~~l~~~--~~~l~~~-~~lVlDEah~~l~~~ 277 (574)
|+.+.|..++... ..+..+...-...+. ....|+|+|...|...+... .+....- -+||+||||+.-.
T Consensus 308 Q~~~~f~~~~~~~------~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~-- 379 (667)
T TIGR00348 308 QLMKEFQSLQKDC------AERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY-- 379 (667)
T ss_pred HHHHHHHhhCCCC------CcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc--
Confidence 9999999876321 111112222223332 34789999999997644321 1111111 2899999997642
Q ss_pred cHHHHHHHHHhccCccCceEEEEeccCchhHHHHH-HHhcccCCeEEEEec-Ccc--cccccceeEEEEe----CCc---
Q 008207 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS-TKFLKSDKKTIDLVG-NEK--MKASTNVRHIVLP----CSS--- 346 (574)
Q Consensus 278 ~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~-~~~~~~~~~~i~~~~-~~~--~~~~~~i~~~~~~----~~~--- 346 (574)
......+...++ +...++||||.-....... ..+.......+.... ... ......+...... ...
T Consensus 380 -~~~~~~l~~~~p---~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l 455 (667)
T TIGR00348 380 -GELAKNLKKALK---NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKL 455 (667)
T ss_pred -hHHHHHHHhhCC---CCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHH
Confidence 222223334555 3579999999743111100 111100001111000 000 0000000000000 000
Q ss_pred ------------------------------------hh-hhhhhhHHHHhh-----cCCCeEEEEecChHHHHHHHHhCC
Q 008207 347 ------------------------------------SA-RSQVIPDIIRCY-----SSGGRTIIFTETKESASQLADLLP 384 (574)
Q Consensus 347 ------------------------------------~~-~~~~l~~ll~~~-----~~~~~~lVF~~t~~~~~~l~~~l~ 384 (574)
.. ......+++..+ ..+++++|||.++..|..+...|.
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~ 535 (667)
T TIGR00348 456 DAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALD 535 (667)
T ss_pred HHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHH
Confidence 00 001111222221 124899999999999998887763
Q ss_pred C---------CccccccCCHH---------------------HHHHHHHHHhC-CCccEEEEeccccccCCCCCCcEEEE
Q 008207 385 G---------ARALHGDIQQS---------------------QREVTLAGFRS-GKFMTLVATNVAARGLDINDVQLIIQ 433 (574)
Q Consensus 385 ~---------~~~lh~~~~~~---------------------~r~~~~~~F~~-g~~~vLvaTd~~~~Gldi~~v~~VI~ 433 (574)
. +.++++..... ....++++|++ +..+|||++|++..|+|.|.+++++.
T Consensus 536 ~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyl 615 (667)
T TIGR00348 536 EELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYL 615 (667)
T ss_pred hhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEE
Confidence 1 22334332211 23478889976 78999999999999999999999886
Q ss_pred eCCCCCHhHHHHHhcccccC-CC---cceEEEEEC
Q 008207 434 CEPPRDVEAYIHRSGRTGRA-GN---TGVAVMLYD 464 (574)
Q Consensus 434 ~d~p~s~~~yiqr~GR~gR~-g~---~G~~i~l~~ 464 (574)
.-+-.+ ..++|.+||+-|. +. .|.++-++.
T Consensus 616 dKplk~-h~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 616 DKPLKY-HGLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred eccccc-cHHHHHHHHhccccCCCCCCEEEEECcC
Confidence 665554 5689999999994 32 344454544
No 129
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.79 E-value=2.8e-18 Score=180.91 Aligned_cols=294 Identities=18% Similarity=0.205 Sum_probs=190.8
Q ss_pred CCCCcHHHHHHHHHHh----cC-CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHH
Q 008207 129 IESLFPIQAMTFDMVL----DG-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (574)
Q Consensus 129 ~~~~~~~Q~~~i~~il----~~-~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv 203 (574)
-..++.+|..+|..+. +| +.++++..||+|||.++ +.++.+|.+..+ ..|+|+|+-++.|+.|.
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~~----------~KRVLFLaDR~~Lv~QA 231 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSGW----------VKRVLFLADRNALVDQA 231 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcch----------hheeeEEechHHHHHHH
Confidence 3468899999997654 44 34999999999999874 455566655433 33699999999999999
Q ss_pred HHHHHHhhCCCC-ceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcC-----CccCCCceEEEecCchhhhcCC
Q 008207 204 HEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG-----NIDLSSLKFRVLDEADEMLRMG 277 (574)
Q Consensus 204 ~~~~~~~~~~~~-~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~-----~~~l~~~~~lVlDEah~~l~~~ 277 (574)
+..+..+...-. .+...-..+. ..++|.|+|..++...+... .+....+++||+||||+=.
T Consensus 232 ~~af~~~~P~~~~~n~i~~~~~~----------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi--- 298 (875)
T COG4096 232 YGAFEDFLPFGTKMNKIEDKKGD----------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI--- 298 (875)
T ss_pred HHHHHHhCCCccceeeeecccCC----------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH---
Confidence 999988764321 2222111111 14799999999999888654 2334558999999999743
Q ss_pred cHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcc------------------cCCeEEEEecCc--ccccccc-
Q 008207 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLK------------------SDKKTIDLVGNE--KMKASTN- 336 (574)
Q Consensus 278 ~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~------------------~~~~~i~~~~~~--~~~~~~~- 336 (574)
......|+.++.. -+++++||+...+..-.-.|+. -++..+.+.... ....+..
T Consensus 299 -~~~~~~I~dYFdA----~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~ 373 (875)
T COG4096 299 -YSEWSSILDYFDA----ATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAG 373 (875)
T ss_pred -HhhhHHHHHHHHH----HHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCcc
Confidence 5556688888754 2344599976644333333331 122222221100 0000000
Q ss_pred ----------e--e-EEEE----------eCCchhhhhhhhHHHHhh--c-CCCeEEEEecChHHHHHHHHhCC------
Q 008207 337 ----------V--R-HIVL----------PCSSSARSQVIPDIIRCY--S-SGGRTIIFTETKESASQLADLLP------ 384 (574)
Q Consensus 337 ----------i--~-~~~~----------~~~~~~~~~~l~~ll~~~--~-~~~~~lVF~~t~~~~~~l~~~l~------ 384 (574)
+ . +.+- ..........+...+... . ..+++||||.+..+|+.+...|.
T Consensus 374 serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~ 453 (875)
T COG4096 374 SEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEY 453 (875)
T ss_pred chhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccc
Confidence 0 0 0000 000011112233333321 1 14689999999999999999886
Q ss_pred ---CCccccccCCHHHHHHHHHHHhC--CCccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccC
Q 008207 385 ---GARALHGDIQQSQREVTLAGFRS--GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA 453 (574)
Q Consensus 385 ---~~~~lh~~~~~~~r~~~~~~F~~--g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~ 453 (574)
-+..+.|+-.+.+ ..++.|.. .--+|.|+.|++..|||+|.|..++.+-.-.|..-|.|++||.-|.
T Consensus 454 ~~~~a~~IT~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 454 NGRYAMKITGDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred cCceEEEEeccchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 2445666665433 44555543 4558889999999999999999999999999999999999999996
No 130
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.79 E-value=1.5e-17 Score=179.30 Aligned_cols=130 Identities=22% Similarity=0.292 Sum_probs=99.9
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHH
Q 008207 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (574)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (574)
.|+ .|+++|.-+.-.+ .+.-|+...||.|||+++.+|++-....+.. |.|++++..||.+-+++
T Consensus 73 lG~-r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~-------------VhVvT~NdyLA~RD~e~ 136 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALTGKG-------------VHIVTVNDYLAKRDQEW 136 (870)
T ss_pred hCC-CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhcCCc-------------eEEEeCCHHHHHHHHHH
Confidence 465 5888887665433 4568899999999999999999655544432 89999999999999999
Q ss_pred HHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHH-----HHhHhc--CCccCCCceEEEecCchhhh
Q 008207 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-----KDHIER--GNIDLSSLKFRVLDEADEML 274 (574)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l-----~~~l~~--~~~~l~~~~~lVlDEah~~l 274 (574)
+..+...+|++++++.++.+..... -...+||+++|..-| .|.+.. .....+.+.+.||||+|.+|
T Consensus 137 m~pvy~~LGLsvg~i~~~~~~~err--~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 137 MGQIYRFLGLTVGLIQEGMSSEERK--KNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HHHHHHHcCCceeeeCCCCChHHHH--HhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 9999999999999999888765433 334589999999755 333321 12235678999999999976
No 131
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.79 E-value=6.7e-19 Score=174.14 Aligned_cols=309 Identities=18% Similarity=0.184 Sum_probs=213.6
Q ss_pred CCCCcHHHHHHHHHHhcC---CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHH
Q 008207 129 IESLFPIQAMTFDMVLDG---SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (574)
Q Consensus 129 ~~~~~~~Q~~~i~~il~~---~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~ 205 (574)
-+.++|+|.+++..+..+ +.-|++-|.|+|||++-+-+++ .+ ..++||||.+-..+.||..
T Consensus 300 st~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-ti---------------kK~clvLcts~VSVeQWkq 363 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-TI---------------KKSCLVLCTSAVSVEQWKQ 363 (776)
T ss_pred ccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-ee---------------cccEEEEecCccCHHHHHH
Confidence 357899999999998843 5789999999999987544333 12 2249999999999999999
Q ss_pred HHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcC--------CccCCCceEEEecCchhhhcCC
Q 008207 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG--------NIDLSSLKFRVLDEADEMLRMG 277 (574)
Q Consensus 206 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~--------~~~l~~~~~lVlDEah~~l~~~ 277 (574)
+|..|..-.+-.++..+... ......++.|+|+|+.++..--.+. .+.-..+.++++||+|-+...-
T Consensus 364 Qfk~wsti~d~~i~rFTsd~-----Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~M 438 (776)
T KOG1123|consen 364 QFKQWSTIQDDQICRFTSDA-----KERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKM 438 (776)
T ss_pred HHHhhcccCccceEEeeccc-----cccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHH
Confidence 99999765555555554432 2334567899999998885432221 1223558899999999987666
Q ss_pred cHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEE----------------EEec---Cc------ccc
Q 008207 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTI----------------DLVG---NE------KMK 332 (574)
Q Consensus 278 ~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i----------------~~~~---~~------~~~ 332 (574)
|+..+..+-.++ .++++||+-.+-..+....+-..|+.. .... .. .+.
T Consensus 439 FRRVlsiv~aHc-------KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL 511 (776)
T KOG1123|consen 439 FRRVLSIVQAHC-------KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYL 511 (776)
T ss_pred HHHHHHHHHHHh-------hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHH
Confidence 777666665554 378999974322222211110111111 0000 00 000
Q ss_pred cccceeEEEEeCCchhhhhhhhHHHHhhc-CCCeEEEEecChHHHHHHHHhCCCCccccccCCHHHHHHHHHHHhC-CCc
Q 008207 333 ASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRS-GKF 410 (574)
Q Consensus 333 ~~~~i~~~~~~~~~~~~~~~l~~ll~~~~-~~~~~lVF~~t~~~~~~l~~~l~~~~~lh~~~~~~~r~~~~~~F~~-g~~ 410 (574)
....-+...+.+-+..|+.+...+++.+. .+.++|||..+.-.....+-.|.+. .++|..+|.+|.++++.|+- ..+
T Consensus 512 ~~~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~Kp-fIYG~Tsq~ERm~ILqnFq~n~~v 590 (776)
T KOG1123|consen 512 RENTRKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGKP-FIYGPTSQNERMKILQNFQTNPKV 590 (776)
T ss_pred hhhhhhhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCCc-eEECCCchhHHHHHHHhcccCCcc
Confidence 11112223344455677888888887664 6779999999988888888777543 68899999999999999985 578
Q ss_pred cEEEEeccccccCCCCCCcEEEEeCCC-CCHhHHHHHhcccccCCC---cc---eEEEEECCC
Q 008207 411 MTLVATNVAARGLDINDVQLIIQCEPP-RDVEAYIHRSGRTGRAGN---TG---VAVMLYDPR 466 (574)
Q Consensus 411 ~vLvaTd~~~~Gldi~~v~~VI~~d~p-~s~~~yiqr~GR~gR~g~---~G---~~i~l~~~~ 466 (574)
+.++-+-++...+|+|..+++|+...- .|..+=.||.||.-|+.+ ++ .-|+|++.+
T Consensus 591 NTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~D 653 (776)
T KOG1123|consen 591 NTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKD 653 (776)
T ss_pred ceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecc
Confidence 899999999999999999999987654 467788999999999853 23 346677766
No 132
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.78 E-value=3.1e-17 Score=175.38 Aligned_cols=320 Identities=17% Similarity=0.193 Sum_probs=199.7
Q ss_pred CCcHHHHHHHHHHhc---C-------CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHH
Q 008207 131 SLFPIQAMTFDMVLD---G-------SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (574)
Q Consensus 131 ~~~~~Q~~~i~~il~---~-------~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa 200 (574)
.++|+|++.+..+.. | .-+|+.-.+|+|||+.....+...+...+...+ .--++|||+|. .|+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~------~~~k~lVV~P~-sLv 310 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKP------LINKPLVVAPS-SLV 310 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccc------cccccEEEccH-HHH
Confidence 688999999987652 2 237788889999999865555444544433110 11358999998 899
Q ss_pred HHHHHHHHHhhCCCCceEEEEeCCcch--HHHHHHh-----cCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhh
Q 008207 201 KQVHEDFDVYGGAVGLTSCCLYGGAPY--HAQEFKL-----KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (574)
Q Consensus 201 ~Qv~~~~~~~~~~~~~~~~~~~gg~~~--~~~~~~l-----~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~ 273 (574)
..|+++|.+|.....+....++|+.+. ..+...+ ....-|++-+++.+.+++.. +....+++||+||.|++
T Consensus 311 ~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrl 388 (776)
T KOG0390|consen 311 NNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRL 388 (776)
T ss_pred HHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCc
Confidence 999999999877667888888888774 1111111 12356888899999776654 44667899999999998
Q ss_pred hcCCcHHHHHHHHHhccCccCceEEEEeccCc------------------------------------------------
Q 008207 274 LRMGFVEDVELILGKVEDANKVQTLLFSATLP------------------------------------------------ 305 (574)
Q Consensus 274 l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~------------------------------------------------ 305 (574)
-+.. ..++..+......+.|++|+|+=
T Consensus 389 kN~~-----s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~ 463 (776)
T KOG0390|consen 389 KNSD-----SLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRER 463 (776)
T ss_pred cchh-----hHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhh
Confidence 5432 33333333333567889999920
Q ss_pred ----hhHHHHHHHhcccC------------CeEEEEecCcc----------cc-ccc-----------------------
Q 008207 306 ----SWVKHISTKFLKSD------------KKTIDLVGNEK----------MK-AST----------------------- 335 (574)
Q Consensus 306 ----~~~~~~~~~~~~~~------------~~~i~~~~~~~----------~~-~~~----------------------- 335 (574)
.++..+...|+... ...+-+..... .. ...
T Consensus 464 ~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~ 543 (776)
T KOG0390|consen 464 EERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLL 543 (776)
T ss_pred HHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhh
Confidence 00122222222111 01110000000 00 000
Q ss_pred ----------------------ceeEEEEeCCchhhhhhhhHHHHhhcCCCeEEEE---ecChHHHHHHHH-hCC----C
Q 008207 336 ----------------------NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIF---TETKESASQLAD-LLP----G 385 (574)
Q Consensus 336 ----------------------~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF---~~t~~~~~~l~~-~l~----~ 385 (574)
..++.........+...|..++... ..++++| +........+.. +.+ .
T Consensus 544 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~--~ek~~~~~v~Isny~~tldl~e~~~~~~g~~ 621 (776)
T KOG0390|consen 544 LLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVI--REKLLVKSVLISNYTQTLDLFEQLCRWRGYE 621 (776)
T ss_pred cccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHH--hhhcceEEEEeccHHHHHHHHHHHHhhcCce
Confidence 0000000001123334444554222 2333333 333333333333 222 5
Q ss_pred CccccccCCHHHHHHHHHHHhCC--C-ccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceE--E
Q 008207 386 ARALHGDIQQSQREVTLAGFRSG--K-FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA--V 460 (574)
Q Consensus 386 ~~~lh~~~~~~~r~~~~~~F~~g--~-~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~--i 460 (574)
+..+||.|+..+|+.+++.|.+. . .-+|.+|-+.+.||++-+.+.||.||++|+|+.-.|.++|+-|.|++-.| |
T Consensus 622 ~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 622 VLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred EEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 67899999999999999999873 3 34566778999999999999999999999999999999999999998766 6
Q ss_pred EEECCC
Q 008207 461 MLYDPR 466 (574)
Q Consensus 461 ~l~~~~ 466 (574)
.|++..
T Consensus 702 rLlatG 707 (776)
T KOG0390|consen 702 RLLATG 707 (776)
T ss_pred EeecCC
Confidence 778776
No 133
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=9.6e-18 Score=167.26 Aligned_cols=347 Identities=18% Similarity=0.203 Sum_probs=231.0
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccC-CChh--HHHhHHHHHHHHhCCCCCCcccCC------------------CCCC
Q 008207 129 IESLFPIQAMTFDMVLDGSDLVGRART-GQGK--TLAFVLPILESLTNGPTKASKKTG------------------YGRA 187 (574)
Q Consensus 129 ~~~~~~~Q~~~i~~il~~~dvi~~a~T-GsGK--Tla~~lpil~~l~~~~~~~~~~~~------------------~~~~ 187 (574)
-..+|+.|.+.+..+.+.+|++.--.| +.|+ +-.|++.+++++.+.+....++.. --.+
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 357999999999999999998765433 3455 457999999988764332111111 1257
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCc---------eEEEEeCC----------------------cc--------hH
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGL---------TSCCLYGG----------------------AP--------YH 228 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~---------~~~~~~gg----------------------~~--------~~ 228 (574)
|+||||||+|+-|..+.+.+..+..+.+- +..--|+| ++ +.
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 89999999999999999988766332211 00111111 00 00
Q ss_pred HHHHHh---cCCCcEEEEChHHHHHhHhcC------CccCCCceEEEecCchhhhcCCcHHHHHHHHHhccCcc------
Q 008207 229 AQEFKL---KKGIDVVIGTPGRIKDHIERG------NIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN------ 293 (574)
Q Consensus 229 ~~~~~l---~~~~~IlV~Tp~~l~~~l~~~------~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~------ 293 (574)
.....| -...||+||+|-.|.-.+.+. .-.|+++.++|||-||-|+.. .|+.+..|+.++...|
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~Q-NwEhl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQ-NWEHLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHh-hHHHHHHHHHHhhcCcccccCC
Confidence 000001 124899999999998777632 123789999999999998744 4888889988886543
Q ss_pred ----------------CceEEEEeccCchhHHHHHHHhcccCCeEEEEecCccc----ccccceeEEEEe--CC-----c
Q 008207 294 ----------------KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKM----KASTNVRHIVLP--CS-----S 346 (574)
Q Consensus 294 ----------------~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~i~~~~~~--~~-----~ 346 (574)
-+|+++||+-..+.+..+...++.+....+........ .....+.|.+.. +. .
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 16999999999998888888888666555543332211 111222222211 11 1
Q ss_pred hhhhhhh-hHHHHhhc--CCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccc
Q 008207 347 SARSQVI-PDIIRCYS--SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419 (574)
Q Consensus 347 ~~~~~~l-~~ll~~~~--~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~ 419 (574)
..++... ..++-.+. ....+|||.++.-.--++.+++. ....+|...+..+-.+.-+.|-.|...||+.|.-+
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 1122211 11221111 23568999999999999999998 44567777777888888899999999999999887
Q ss_pred c--ccCCCCCCcEEEEeCCCCCHhHH---HHHhcccccCCC----cceEEEEECCCchHHHHHHHHhC
Q 008207 420 A--RGLDINDVQLIIQCEPPRDVEAY---IHRSGRTGRAGN----TGVAVMLYDPRKSSVSKIERESG 478 (574)
Q Consensus 420 ~--~Gldi~~v~~VI~~d~p~s~~~y---iqr~GR~gR~g~----~G~~i~l~~~~~~~~~~i~~~~~ 478 (574)
. |-.+|.+|..||+|.+|.+|.-| +.+.+|+.-.|+ .-.|.++|+.. ....+++.+|
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKy--D~i~Le~ivG 678 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKY--DRIRLENIVG 678 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeech--hhHHHHHhhh
Confidence 5 78999999999999999998766 566677755543 34667777743 3334555544
No 134
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.77 E-value=2.1e-16 Score=160.67 Aligned_cols=289 Identities=20% Similarity=0.225 Sum_probs=211.2
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHHhhCCC-Cce----EEEEeC---------------CcchHHHHHHhc----------
Q 008207 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLT----SCCLYG---------------GAPYHAQEFKLK---------- 235 (574)
Q Consensus 186 ~~~~~Lil~PtreLa~Qv~~~~~~~~~~~-~~~----~~~~~g---------------g~~~~~~~~~l~---------- 235 (574)
.+|++|||+|+|..|.++.+.+..+.... .+. ...-+| +...........
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 57899999999999999998887665431 000 000011 000111111111
Q ss_pred --------------CCCcEEEEChHHHHHhHhc------CCccCCCceEEEecCchhhhcCCcHHHHHHHHHhccCcc--
Q 008207 236 --------------KGIDVVIGTPGRIKDHIER------GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN-- 293 (574)
Q Consensus 236 --------------~~~~IlV~Tp~~l~~~l~~------~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~-- 293 (574)
..+|||||+|=.|...+.. ..-.|+++.++|+|.||-|+ |..|+.+..++..++..+
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~-MQNW~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL-MQNWEHVLHVFEHLNLQPKK 194 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH-HhhHHHHHHHHHHhccCCCC
Confidence 1389999999999888874 23348999999999999885 666899999998887644
Q ss_pred --------------------CceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcc-----cccccceeEEEEeCCchh
Q 008207 294 --------------------KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK-----MKASTNVRHIVLPCSSSA 348 (574)
Q Consensus 294 --------------------~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~i~~~~~~~~~~~ 348 (574)
-+|+|+||+...+.+..+...++.+....+.+..... ......+.|.+...+...
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 2799999999999999999998867666666554433 244566777776543221
Q ss_pred -------hh-----hhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccE
Q 008207 349 -------RS-----QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMT 412 (574)
Q Consensus 349 -------~~-----~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~v 412 (574)
+. .++..+.+ ....+.+|||++|.-+--+|.++|. ....+|-..++.+-.+....|..|+.++
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~-~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~i 353 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKR-DSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPI 353 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhh-ccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceE
Confidence 22 23333332 3356899999999999999999998 4567899999999999999999999999
Q ss_pred EEEecccc--ccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCC------cceEEEEECCCchHHHHHHHHhC
Q 008207 413 LVATNVAA--RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN------TGVAVMLYDPRKSSVSKIERESG 478 (574)
Q Consensus 413 LvaTd~~~--~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~------~G~~i~l~~~~~~~~~~i~~~~~ 478 (574)
|+.|.-+. +-..|.++.+||.|++|..+.-|-..++-.+.... ...|.++|+.. ...++|+.+|
T Consensus 354 LL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~--D~~~LErIVG 425 (442)
T PF06862_consen 354 LLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKY--DALRLERIVG 425 (442)
T ss_pred EEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHh--HHHHHHHHhC
Confidence 99998765 78889999999999999999999888765554432 56889999854 4456666665
No 135
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.77 E-value=3.5e-17 Score=170.38 Aligned_cols=327 Identities=19% Similarity=0.267 Sum_probs=213.2
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHH
Q 008207 131 SLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (574)
Q Consensus 131 ~~~~~Q~~~i~~il----~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (574)
++-+||.-.+.|+. .+-+.|+....|-|||.. ++..+..|.......+ -|||||...|-+ |-++
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~~gp----------HLVVvPsSTleN-WlrE 466 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGNPGP----------HLVVVPSSTLEN-WLRE 466 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCCCCC----------cEEEecchhHHH-HHHH
Confidence 46789999998865 456789999999999975 3334444443322221 489999977655 6678
Q ss_pred HHHhhCCCCceEEEEeCCcchHHHHHHh----cCCCcEEEEChHHHHHhH-hcCCccCCCceEEEecCchhhhcCCcHHH
Q 008207 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHI-ERGNIDLSSLKFRVLDEADEMLRMGFVED 281 (574)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~~l~~~l-~~~~~~l~~~~~lVlDEah~~l~~~~~~~ 281 (574)
|.+|+ +.++|..+||......+.+.. ..+.+|+++|+.....-- .+..+.-.++.++|+||+|.+-++. ...
T Consensus 467 f~kwC--Psl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeR 543 (941)
T KOG0389|consen 467 FAKWC--PSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SER 543 (941)
T ss_pred HHHhC--CceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHH
Confidence 88888 458999999998776665543 236899999997764211 1122334568899999999887665 333
Q ss_pred HHHHHHhccCccCceEEEEeccC----------------ch---------------------------------------
Q 008207 282 VELILGKVEDANKVQTLLFSATL----------------PS--------------------------------------- 306 (574)
Q Consensus 282 ~~~il~~l~~~~~~q~ll~SAT~----------------~~--------------------------------------- 306 (574)
+..++. ++ ..+.+++|+|. |.
T Consensus 544 y~~LM~-I~---An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~i 619 (941)
T KOG0389|consen 544 YKHLMS-IN---ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTI 619 (941)
T ss_pred HHHhcc-cc---ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHh
Confidence 333332 22 34678888881 00
Q ss_pred ---h-HHHHHHHhcccCCe---EEEEecCcc-----------------cccccc---------------------eeEEE
Q 008207 307 ---W-VKHISTKFLKSDKK---TIDLVGNEK-----------------MKASTN---------------------VRHIV 341 (574)
Q Consensus 307 ---~-~~~~~~~~~~~~~~---~i~~~~~~~-----------------~~~~~~---------------------i~~~~ 341 (574)
. ++++....+..-|+ .|....-.. .....+ ++++|
T Consensus 620 m~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y 699 (941)
T KOG0389|consen 620 MKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIY 699 (941)
T ss_pred hhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhc
Confidence 0 00011111111111 111000000 000000 00000
Q ss_pred ----------------------------------------------------E---eCCchhhhhhhhHHHHhh-cCCCe
Q 008207 342 ----------------------------------------------------L---PCSSSARSQVIPDIIRCY-SSGGR 365 (574)
Q Consensus 342 ----------------------------------------------------~---~~~~~~~~~~l~~ll~~~-~~~~~ 365 (574)
+ ..-.+.|...|..+|... ..|.+
T Consensus 700 ~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~R 779 (941)
T KOG0389|consen 700 TDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDR 779 (941)
T ss_pred cHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCE
Confidence 0 000133444555555433 35689
Q ss_pred EEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCC--ccEEEEeccccccCCCCCCcEEEEeCCCCC
Q 008207 366 TIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK--FMTLVATNVAARGLDINDVQLIIQCEPPRD 439 (574)
Q Consensus 366 ~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~--~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s 439 (574)
||||.......+-|.-.|. ....+.|...-..|+.+++.|...+ +-+|++|-+.+-|||+...++||.||+..+
T Consensus 780 VLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFN 859 (941)
T KOG0389|consen 780 VLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFN 859 (941)
T ss_pred EEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCC
Confidence 9999999888888887776 5667899999999999999998643 456899999999999999999999999999
Q ss_pred HhHHHHHhcccccCCCcc--eEEEEECCC--chHHHHHHHH
Q 008207 440 VEAYIHRSGRTGRAGNTG--VAVMLYDPR--KSSVSKIERE 476 (574)
Q Consensus 440 ~~~yiqr~GR~gR~g~~G--~~i~l~~~~--~~~~~~i~~~ 476 (574)
|-.-.|.--||+|.|+.. .+|.|++.. +..+.++.+.
T Consensus 860 P~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~ 900 (941)
T KOG0389|consen 860 PYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKT 900 (941)
T ss_pred CcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHH
Confidence 999999999999999854 568899987 5555555543
No 136
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=4.3e-17 Score=163.56 Aligned_cols=346 Identities=14% Similarity=0.081 Sum_probs=233.5
Q ss_pred HHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHH
Q 008207 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (574)
Q Consensus 124 l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv 203 (574)
+..+.-.....+|.++|..+-+|+++++.-.|.+||.++|.+.....+..... ...+++.|+.++++..
T Consensus 279 ~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~-----------s~~~~~~~~~~~~~~~ 347 (1034)
T KOG4150|consen 279 LNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHA-----------TNSLLPSEMVEHLRNG 347 (1034)
T ss_pred HhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcc-----------cceecchhHHHHhhcc
Confidence 34555667789999999999999999999999999999998887766654332 2378999999998865
Q ss_pred HHHHHHhh---CCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCcc----CCCceEEEecCchhhhcC
Q 008207 204 HEDFDVYG---GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNID----LSSLKFRVLDEADEMLRM 276 (574)
Q Consensus 204 ~~~~~~~~---~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~----l~~~~~lVlDEah~~l~~ 276 (574)
.+-+.-.. ....-.++-.+.+.+......-.+.+.+++++.|......+.-+.+. +-...++++||+|-.+-
T Consensus 348 ~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~- 426 (1034)
T KOG4150|consen 348 SKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLF- 426 (1034)
T ss_pred CCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeec-
Confidence 44322110 01112234445555554444555677999999999987766544433 33457789999997642
Q ss_pred CcHHH----HHHHHHh---ccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCC----
Q 008207 277 GFVED----VELILGK---VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS---- 345 (574)
Q Consensus 277 ~~~~~----~~~il~~---l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~---- 345 (574)
-|... +..++.. +....+.|++-.|||+-..+......+-.+.-..+...+ .+..-+++++-.+
T Consensus 427 ~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DG-----SPs~~K~~V~WNP~~~P 501 (1034)
T KOG4150|consen 427 PTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDG-----SPSSEKLFVLWNPSAPP 501 (1034)
T ss_pred chhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecC-----CCCccceEEEeCCCCCC
Confidence 22322 2222222 222346899999999988776655554323333333322 2233334433211
Q ss_pred --chhhhhhhh---H-HHHhhcCCCeEEEEecChHHHHHHHHhCC------------CCccccccCCHHHHHHHHHHHhC
Q 008207 346 --SSARSQVIP---D-IIRCYSSGGRTIIFTETKESASQLADLLP------------GARALHGDIQQSQREVTLAGFRS 407 (574)
Q Consensus 346 --~~~~~~~l~---~-ll~~~~~~~~~lVF~~t~~~~~~l~~~l~------------~~~~lh~~~~~~~r~~~~~~F~~ 407 (574)
...+...+. . +......+-++|-||.+++-++.+....+ .+..+.|+-...+|.++....-.
T Consensus 502 ~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~ 581 (1034)
T KOG4150|consen 502 TSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFG 581 (1034)
T ss_pred cchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhC
Confidence 122222111 1 12223366799999999999987776554 34568899999999999999999
Q ss_pred CCccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC---chHHHHHHHHhCCcceec
Q 008207 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR---KSSVSKIERESGVKFEHI 484 (574)
Q Consensus 408 g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~---~~~~~~i~~~~~~~~~~~ 484 (574)
|+..-+|||+++.-||||.+.+.|++.++|.|...+.|..|||||.+++..++.++... ..++.--+...+.+-.++
T Consensus 582 G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL 661 (1034)
T KOG4150|consen 582 GKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEEL 661 (1034)
T ss_pred CeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCccee
Confidence 99999999999999999999999999999999999999999999999888776665543 444444444445444444
Q ss_pred CC
Q 008207 485 SA 486 (574)
Q Consensus 485 ~~ 486 (574)
.+
T Consensus 662 ~L 663 (1034)
T KOG4150|consen 662 HL 663 (1034)
T ss_pred EE
Confidence 33
No 137
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=1.5e-16 Score=171.08 Aligned_cols=129 Identities=22% Similarity=0.301 Sum_probs=102.7
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHH
Q 008207 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (574)
Q Consensus 128 g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~ 207 (574)
|. .|+++|..+--.+ .+--|+...||-|||+++.+|++-..+.+.. |-||+++..||.+-++++
T Consensus 83 G~-r~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL~Gkg-------------VhVVTvNdYLA~RDae~m 146 (939)
T PRK12902 83 GM-RHFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNALTGKG-------------VHVVTVNDYLARRDAEWM 146 (939)
T ss_pred CC-CcchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhhcCCC-------------eEEEeCCHHHHHhHHHHH
Confidence 44 6777776555444 4556889999999999999999877666543 899999999999999999
Q ss_pred HHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHH-----HHhHhc--CCccCCCceEEEecCchhhh
Q 008207 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-----KDHIER--GNIDLSSLKFRVLDEADEML 274 (574)
Q Consensus 208 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l-----~~~l~~--~~~~l~~~~~lVlDEah~~l 274 (574)
..+...+|++|+++.++.+.. .+.....+||+++|+..| .|.+.. +....+.+.+.||||+|.+|
T Consensus 147 ~~vy~~LGLtvg~i~~~~~~~--err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 147 GQVHRFLGLSVGLIQQDMSPE--ERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HHHHHHhCCeEEEECCCCChH--HHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 999999999999998877654 344556799999999988 554432 22346789999999999976
No 138
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.75 E-value=1.2e-15 Score=163.14 Aligned_cols=112 Identities=18% Similarity=0.210 Sum_probs=80.5
Q ss_pred CCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhC----CCccEEEEeccccccCCC--------
Q 008207 362 SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS----GKFMTLVATNVAARGLDI-------- 425 (574)
Q Consensus 362 ~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~----g~~~vLvaTd~~~~Gldi-------- 425 (574)
.+|+++|.+.|....+.++..|. ....+.|..+ .+...+++|+. |.-.||++|+.+..|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 56899999999999999998885 2234455432 45678888887 478999999999999999
Q ss_pred --CCCcEEEEeCCCCC-------------------------HhHHHHHhcccccCCCc--ceEEEEECCC--chHHHHHH
Q 008207 426 --NDVQLIIQCEPPRD-------------------------VEAYIHRSGRTGRAGNT--GVAVMLYDPR--KSSVSKIE 474 (574)
Q Consensus 426 --~~v~~VI~~d~p~s-------------------------~~~yiqr~GR~gR~g~~--G~~i~l~~~~--~~~~~~i~ 474 (574)
..+++||..-+|.. .-.+.|-+||--|.... --++.+++++ ..+-..+.
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R~~~~yg~~~~ 626 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGRIHWPYMESWQ 626 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCCCCchhHHHHH
Confidence 34889998777731 12456888999998654 3355556655 44444444
Q ss_pred H
Q 008207 475 R 475 (574)
Q Consensus 475 ~ 475 (574)
.
T Consensus 627 ~ 627 (636)
T TIGR03117 627 E 627 (636)
T ss_pred H
Confidence 3
No 139
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.74 E-value=1.7e-17 Score=144.95 Aligned_cols=124 Identities=38% Similarity=0.696 Sum_probs=108.1
Q ss_pred eEEEEeCCchhhhhhhhHHHHhhc-CCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccE
Q 008207 338 RHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMT 412 (574)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~ll~~~~-~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~v 412 (574)
.+.+...+. .+...+..++.... .++++||||++...++.++..|. .+..+||+++..+|..+++.|.+|...+
T Consensus 3 ~~~~~~~~~-~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 81 (131)
T cd00079 3 KQYVLPVED-EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVV 81 (131)
T ss_pred EEEEEECCH-HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcE
Confidence 344444432 56666777766543 57899999999999999999985 5678999999999999999999999999
Q ss_pred EEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEE
Q 008207 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462 (574)
Q Consensus 413 LvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l 462 (574)
|++|.++++|+|+|++++||++++|++...|+|++||++|.|+.|.++++
T Consensus 82 li~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 82 LVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred EEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999999999999999988764
No 140
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.73 E-value=1.2e-15 Score=151.16 Aligned_cols=325 Identities=12% Similarity=0.168 Sum_probs=210.1
Q ss_pred CCCCcHHHHHHHHHHh-cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHH
Q 008207 129 IESLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (574)
Q Consensus 129 ~~~~~~~Q~~~i~~il-~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~ 207 (574)
+..+.|+|.+.+...+ .|..+++...+|-|||+.++.-+.-.....+ .||+||. .+-.-|.+.+
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEwp--------------lliVcPA-svrftWa~al 260 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEWP--------------LLIVCPA-SVRFTWAKAL 260 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcCc--------------EEEEecH-HHhHHHHHHH
Confidence 3467899999998765 7889999999999999975433322222221 7999998 6777789999
Q ss_pred HHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHH
Q 008207 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287 (574)
Q Consensus 208 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~ 287 (574)
.+|...... +.++.++.+.-. .+-....|.|.+++.+..+- ..+.-..+++||+||.|.+-+ +-......++.
T Consensus 261 ~r~lps~~p-i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~--~~l~~~~~~vvI~DEsH~Lk~-sktkr~Ka~~d 333 (689)
T KOG1000|consen 261 NRFLPSIHP-IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLH--DILKKEKYRVVIFDESHMLKD-SKTKRTKAATD 333 (689)
T ss_pred HHhcccccc-eEEEecccCCcc---ccccCCeEEEEEHHHHHHHH--HHHhcccceEEEEechhhhhc-cchhhhhhhhh
Confidence 988765433 555655544321 12223679999999885432 234455689999999997743 32333444444
Q ss_pred hccCccCceEEEEeccCc-------------------hhHHHHHHHhcccCCeE--EEEecCcc----------------
Q 008207 288 KVEDANKVQTLLFSATLP-------------------SWVKHISTKFLKSDKKT--IDLVGNEK---------------- 330 (574)
Q Consensus 288 ~l~~~~~~q~ll~SAT~~-------------------~~~~~~~~~~~~~~~~~--i~~~~~~~---------------- 330 (574)
.+.. -.++|++|+|.. +...++..+|....... .+..+...
T Consensus 334 llk~--akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRR 411 (689)
T KOG1000|consen 334 LLKV--AKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRR 411 (689)
T ss_pred HHHH--hhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHH
Confidence 4444 347899999931 12233444444211111 11111110
Q ss_pred ------cccccceeEEEEeCCch-------------------------------------hhhhhhh-HHHH----hhcC
Q 008207 331 ------MKASTNVRHIVLPCSSS-------------------------------------ARSQVIP-DIIR----CYSS 362 (574)
Q Consensus 331 ------~~~~~~i~~~~~~~~~~-------------------------------------~~~~~l~-~ll~----~~~~ 362 (574)
...+..-++..+.+... .|...+. .++. ....
T Consensus 412 lK~dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~ 491 (689)
T KOG1000|consen 412 LKADVLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAP 491 (689)
T ss_pred HHHHHHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCC
Confidence 01112222222222210 0111111 2222 1135
Q ss_pred CCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCC-CccE-EEEeccccccCCCCCCcEEEEeCC
Q 008207 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG-KFMT-LVATNVAARGLDINDVQLIIQCEP 436 (574)
Q Consensus 363 ~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g-~~~v-LvaTd~~~~Gldi~~v~~VI~~d~ 436 (574)
+.+.+||+......+.+...+. +...+.|..++..|....+.|+.. +++| +++-.+++.||++...+.|++..+
T Consensus 492 ~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL 571 (689)
T KOG1000|consen 492 PRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAEL 571 (689)
T ss_pred CceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEe
Confidence 6789999999999999988886 445688999999999999999864 5555 455678899999999999999999
Q ss_pred CCCHhHHHHHhcccccCCCcceE--EEEECCC---chHHHHHHHHh
Q 008207 437 PRDVEAYIHRSGRTGRAGNTGVA--VMLYDPR---KSSVSKIERES 477 (574)
Q Consensus 437 p~s~~~yiqr~GR~gR~g~~G~~--i~l~~~~---~~~~~~i~~~~ 477 (574)
|+++.-.+|.=.|++|.|+...+ +.|+... ++.+..+.+.+
T Consensus 572 ~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL 617 (689)
T KOG1000|consen 572 HWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKL 617 (689)
T ss_pred cCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHH
Confidence 99999999999999999986544 5556555 55566666654
No 141
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.71 E-value=3e-16 Score=157.77 Aligned_cols=276 Identities=18% Similarity=0.189 Sum_probs=178.2
Q ss_pred CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCc
Q 008207 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA 225 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~ 225 (574)
.+-++-+|||.||||.- +++++..... +++--|.|-||..|++.++..+ +.+-.++|..
T Consensus 191 RkIi~H~GPTNSGKTy~----ALqrl~~aks-------------GvycGPLrLLA~EV~~r~na~g----ipCdL~TGeE 249 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYR----ALQRLKSAKS-------------GVYCGPLRLLAHEVYDRLNALG----IPCDLLTGEE 249 (700)
T ss_pred heEEEEeCCCCCchhHH----HHHHHhhhcc-------------ceecchHHHHHHHHHHHhhhcC----CCccccccce
Confidence 45577889999999975 4555554432 6899999999999999998765 5555666654
Q ss_pred chHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHH-HHHHhccCccCceEEEEeccC
Q 008207 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE-LILGKVEDANKVQTLLFSATL 304 (574)
Q Consensus 226 ~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~-~il~~l~~~~~~q~ll~SAT~ 304 (574)
....... ...++.+=||-+++ . .-..+++.||||+..|-+...+..++ .++..... .++.++=
T Consensus 250 ~~~~~~~--~~~a~hvScTVEM~-------s-v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~Ad--EiHLCGe---- 313 (700)
T KOG0953|consen 250 RRFVLDN--GNPAQHVSCTVEMV-------S-VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAAD--EIHLCGE---- 313 (700)
T ss_pred eeecCCC--CCcccceEEEEEEe-------e-cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhh--hhhccCC----
Confidence 3222111 12366777777665 1 23458999999999998765444444 44444333 3443332
Q ss_pred chhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC
Q 008207 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP 384 (574)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~ 384 (574)
+.+..+.+..+......+.+.. |-....-...+.+..-+....+|..++.| |++.+..+...+.
T Consensus 314 -psvldlV~~i~k~TGd~vev~~-------------YeRl~pL~v~~~~~~sl~nlk~GDCvV~F--Skk~I~~~k~kIE 377 (700)
T KOG0953|consen 314 -PSVLDLVRKILKMTGDDVEVRE-------------YERLSPLVVEETALGSLSNLKPGDCVVAF--SKKDIFTVKKKIE 377 (700)
T ss_pred -chHHHHHHHHHhhcCCeeEEEe-------------ecccCcceehhhhhhhhccCCCCCeEEEe--ehhhHHHHHHHHH
Confidence 2344555555532222222111 11111111111222333334344444444 4555554444433
Q ss_pred -----CCccccccCCHHHHHHHHHHHhC--CCccEEEEeccccccCCCCCCcEEEEeCCC---------CCHhHHHHHhc
Q 008207 385 -----GARALHGDIQQSQREVTLAGFRS--GKFMTLVATNVAARGLDINDVQLIIQCEPP---------RDVEAYIHRSG 448 (574)
Q Consensus 385 -----~~~~lh~~~~~~~r~~~~~~F~~--g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p---------~s~~~yiqr~G 448 (574)
.+.+++|.+++..|...-..|++ ++++||||||+.++|+|+ +++-||+|++- .+..+..|.+|
T Consensus 378 ~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAG 456 (700)
T KOG0953|consen 378 KAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAG 456 (700)
T ss_pred HhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhh
Confidence 58999999999999999999987 999999999999999999 68999988853 46788999999
Q ss_pred ccccCCC---cceEEEEECCCchHHHHHHH
Q 008207 449 RTGRAGN---TGVAVMLYDPRKSSVSKIER 475 (574)
Q Consensus 449 R~gR~g~---~G~~i~l~~~~~~~~~~i~~ 475 (574)
||||.|. .|.+.+|..++-..++++.+
T Consensus 457 RAGRf~s~~~~G~vTtl~~eDL~~L~~~l~ 486 (700)
T KOG0953|consen 457 RAGRFGSKYPQGEVTTLHSEDLKLLKRILK 486 (700)
T ss_pred cccccccCCcCceEEEeeHhhHHHHHHHHh
Confidence 9999975 68888888877445555544
No 142
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.70 E-value=8.2e-16 Score=135.68 Aligned_cols=144 Identities=44% Similarity=0.555 Sum_probs=111.2
Q ss_pred CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcc
Q 008207 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~ 226 (574)
+++++.++||+|||.+++.++........ ..+++|++|++.++.|+.+.+..+... +..+..+.++..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~-----------~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~ 68 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLK-----------GGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTS 68 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhccc-----------CCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcc
Confidence 46899999999999999888887776521 235999999999999999999877765 677777887776
Q ss_pred hHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccC
Q 008207 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304 (574)
Q Consensus 227 ~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~ 304 (574)
............+|+++|++.+...+.........++++|+||+|.+....+............ ...+++++|||+
T Consensus 69 ~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~--~~~~~i~~saTp 144 (144)
T cd00046 69 IKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLP--KDRQVLLLSATP 144 (144)
T ss_pred hhHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCC--ccceEEEEeccC
Confidence 6666555667899999999999988877655567789999999999976554443212222222 267899999995
No 143
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.70 E-value=1.4e-14 Score=164.88 Aligned_cols=116 Identities=18% Similarity=0.147 Sum_probs=85.8
Q ss_pred CCCeEEEEecChHHHHHHHHhCCC------CccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCC--cEEEE
Q 008207 362 SGGRTIIFTETKESASQLADLLPG------ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV--QLIIQ 433 (574)
Q Consensus 362 ~~~~~lVF~~t~~~~~~l~~~l~~------~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v--~~VI~ 433 (574)
.++++|||++|.+..+.++..|.. ...+.-+++...|.++++.|+++.-.||++|..+.+|||+|+- ++||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 567999999999999999988752 2233334444568999999999988999999999999999974 78888
Q ss_pred eCCCC----C--------------------------HhHHHHHhcccccCCCcceEEEEECCC---chHHHHHHHHh
Q 008207 434 CEPPR----D--------------------------VEAYIHRSGRTGRAGNTGVAVMLYDPR---KSSVSKIERES 477 (574)
Q Consensus 434 ~d~p~----s--------------------------~~~yiqr~GR~gR~g~~G~~i~l~~~~---~~~~~~i~~~~ 477 (574)
..+|. + ...+.|.+||.-|....--++++++++ ..+-+.+.+.+
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sL 907 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESL 907 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhC
Confidence 77664 1 123468899999987644467777776 33444554443
No 144
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.69 E-value=6.7e-17 Score=127.41 Aligned_cols=70 Identities=39% Similarity=0.722 Sum_probs=68.2
Q ss_pred CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCC
Q 008207 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454 (574)
Q Consensus 385 ~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g 454 (574)
.+..+||++++.+|..+++.|+++...|||||+++++|||+|++++||+|++|+++..|+|++||+||.|
T Consensus 9 ~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 9 KVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp SEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred cEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 6778999999999999999999999999999999999999999999999999999999999999999986
No 145
>COG4889 Predicted helicase [General function prediction only]
Probab=99.65 E-value=4.5e-16 Score=163.08 Aligned_cols=335 Identities=18% Similarity=0.263 Sum_probs=201.8
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC----CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCC
Q 008207 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG----SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (574)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~----~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 185 (574)
.|+.|.- .++..+|.-..-..|+|+|+.+|.....| ..-=+....|+|||++. |-|.+.+...
T Consensus 141 DW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTs-LkisEala~~----------- 207 (1518)
T COG4889 141 DWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTS-LKISEALAAA----------- 207 (1518)
T ss_pred ChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchH-HHHHHHHhhh-----------
Confidence 3444432 45556665566789999999999998754 22334566799999984 5566666542
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHH-------------------------HHHhcCCCcE
Q 008207 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ-------------------------EFKLKKGIDV 240 (574)
Q Consensus 186 ~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~-------------------------~~~l~~~~~I 240 (574)
++|+|+|+..|..|..+++..-. ...++...++.+....+. .+.-..+--|
T Consensus 208 ---~iL~LvPSIsLLsQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~v 283 (1518)
T COG4889 208 ---RILFLVPSISLLSQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTV 283 (1518)
T ss_pred ---heEeecchHHHHHHHHHHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEE
Confidence 48999999999999888775432 334555555444321111 1122345679
Q ss_pred EEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHhccCc---cCceEEEEeccCchh---H------
Q 008207 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA---NKVQTLLFSATLPSW---V------ 308 (574)
Q Consensus 241 lV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~---~~~q~ll~SAT~~~~---~------ 308 (574)
+++|+..+...-+....-+..+++||+||||+-.......+=..-+..+... ...+.+.|+||..-. .
T Consensus 284 vFsTYQSl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd 363 (1518)
T COG4889 284 VFSTYQSLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKD 363 (1518)
T ss_pred EEEcccchHHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhh
Confidence 9999999876655444557889999999999954211111111111111110 023456777773210 0
Q ss_pred ------------------------HHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhhhhhhhHHHHhh----
Q 008207 309 ------------------------KHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY---- 360 (574)
Q Consensus 309 ------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~---- 360 (574)
+.+.+..+ .+++++.+..+.. .....+..........-..+-...++-+.
T Consensus 364 ~s~~l~SMDDe~~fGeef~rl~FgeAv~rdlL-TDYKVmvlaVd~~-~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGla 441 (1518)
T COG4889 364 HSAELSSMDDELTFGEEFHRLGFGEAVERDLL-TDYKVMVLAVDKE-VIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLA 441 (1518)
T ss_pred ccceeeccchhhhhchhhhcccHHHHHHhhhh-ccceEEEEEechh-hhhhhhhhhccCcccccchhhhhhhhhhhhhhh
Confidence 11122222 3444443333221 11111111111111111111111111111
Q ss_pred ----------------cCCCeEEEEecChHHHHHHHHhCC-------------------CCccccccCCHHHHHHHHH--
Q 008207 361 ----------------SSGGRTIIFTETKESASQLADLLP-------------------GARALHGDIQQSQREVTLA-- 403 (574)
Q Consensus 361 ----------------~~~~~~lVF~~t~~~~~~l~~~l~-------------------~~~~lh~~~~~~~r~~~~~-- 403 (574)
.+-.++|-||.+.++...+++.|. .+..+.|.|...+|...+.
T Consensus 442 kr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~ 521 (1518)
T COG4889 442 KRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELK 521 (1518)
T ss_pred hhccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhcc
Confidence 012478999999999988887774 3445678899888865544
Q ss_pred -HHhCCCccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCC---cceEEEEE
Q 008207 404 -GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN---TGVAVMLY 463 (574)
Q Consensus 404 -~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~---~G~~i~l~ 463 (574)
.|...+++||--...++.|+|+|.++.||+|++-.+.-+.+|.+||..|-.. -|..|+-+
T Consensus 522 ~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 522 NTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred CCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 3566889999989999999999999999999999999999999999999632 46665543
No 146
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.63 E-value=7.8e-15 Score=159.65 Aligned_cols=119 Identities=24% Similarity=0.276 Sum_probs=90.7
Q ss_pred hhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCCCCccccccCC--HHHHHHHHHHHhCCCccEEEEeccccccCCCC--
Q 008207 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQ--QSQREVTLAGFRSGKFMTLVATNVAARGLDIN-- 426 (574)
Q Consensus 351 ~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~~~~lh~~~~--~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~-- 426 (574)
.++..+...+..+.|+||-+.|.+..+.|+.+|....+-|.-|. +.+++.-+-.-..-.-.|.|||++|+||-||.
T Consensus 616 Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~GaVTIATNMAGRGTDIkLg 695 (1112)
T PRK12901 616 AVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPGTVTIATNMAGRGTDIKLS 695 (1112)
T ss_pred HHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCCcEEEeccCcCCCcCcccc
Confidence 45566666778899999999999999999999984443333332 12333322222222448999999999999997
Q ss_pred ------CCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCCchH
Q 008207 427 ------DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS 469 (574)
Q Consensus 427 ------~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~~~~ 469 (574)
+==|||-...+.|..---|-.||+||.|.+|.+-+|++-.+..
T Consensus 696 ~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdL 744 (1112)
T PRK12901 696 PEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNL 744 (1112)
T ss_pred hhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHH
Confidence 4468999999999999999999999999999998888866433
No 147
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.63 E-value=1.9e-14 Score=154.65 Aligned_cols=118 Identities=19% Similarity=0.317 Sum_probs=95.7
Q ss_pred hhhhhhHHHHhh-cCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCC--ccEEEEeccccc
Q 008207 349 RSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK--FMTLVATNVAAR 421 (574)
Q Consensus 349 ~~~~l~~ll~~~-~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~--~~vLvaTd~~~~ 421 (574)
|+..|.-+|+.+ ..+.++|||+......+-|..+|. .+..|.|....++|+..+++|+... +.++++|--.+.
T Consensus 1261 KLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggv 1340 (1958)
T KOG0391|consen 1261 KLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGV 1340 (1958)
T ss_pred hHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcc
Confidence 445555555543 467899999999999999999997 3445778899999999999998643 467889999999
Q ss_pred cCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcc--eEEEEECCC
Q 008207 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG--VAVMLYDPR 466 (574)
Q Consensus 422 Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G--~~i~l~~~~ 466 (574)
|||+-+.+.||+||-.|++..-.|.--|+.|.|+.. ..|.|++..
T Consensus 1341 GiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1341 GINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred ccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 999999999999999999887777777777777644 458888876
No 148
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.63 E-value=2.7e-14 Score=155.28 Aligned_cols=308 Identities=18% Similarity=0.262 Sum_probs=210.1
Q ss_pred cHHHHHHHHHHhc-CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHH-Hh
Q 008207 133 FPIQAMTFDMVLD-GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD-VY 210 (574)
Q Consensus 133 ~~~Q~~~i~~il~-~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~-~~ 210 (574)
.|+|.++++.+.+ +.++++.||+|||||.++-+.++. + ....++++++|.-+.+..++..+. +|
T Consensus 1145 n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-----~---------~~~~~~vyi~p~~~i~~~~~~~w~~~f 1210 (1674)
T KOG0951|consen 1145 NPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-----P---------DTIGRAVYIAPLEEIADEQYRDWEKKF 1210 (1674)
T ss_pred CCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-----C---------ccceEEEEecchHHHHHHHHHHHHHhh
Confidence 6889999988764 567999999999999998887774 1 233479999999999998888774 77
Q ss_pred hCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCC-----cHHHHHHH
Q 008207 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG-----FVEDVELI 285 (574)
Q Consensus 211 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~-----~~~~~~~i 285 (574)
....|+.+..+.|..+.... +....+|+|+||+++ +.++ ....+++.|.||+|.+.... ..-.+..|
T Consensus 1211 ~~~~G~~~~~l~ge~s~~lk---l~~~~~vii~tpe~~-d~lq----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~i 1282 (1674)
T KOG0951|consen 1211 SKLLGLRIVKLTGETSLDLK---LLQKGQVIISTPEQW-DLLQ----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYI 1282 (1674)
T ss_pred ccccCceEEecCCccccchH---HhhhcceEEechhHH-HHHh----hhhhcceEeeehhhhhcccCCceEEEEeeHHHH
Confidence 77889999999888876533 444589999999998 4443 57789999999999775211 00114555
Q ss_pred HHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCccccccccee-EEEEeCCchh-----hhhhhhHHHHh
Q 008207 286 LGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR-HIVLPCSSSA-----RSQVIPDIIRC 359 (574)
Q Consensus 286 l~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~-~~~~~~~~~~-----~~~~l~~ll~~ 359 (574)
...+.+ +.+++.+|..+.+.- .+ -++ ....++.+..+.... +..+. |.+-...... .......+.+.
T Consensus 1283 a~q~~k--~ir~v~ls~~lana~-d~--ig~-s~~~v~Nf~p~~R~~-Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~ 1355 (1674)
T KOG0951|consen 1283 ASQLEK--KIRVVALSSSLANAR-DL--IGA-SSSGVFNFSPSVRPV-PLEIHIQSVDISHFESRMLAMTKPTYTAIVRH 1355 (1674)
T ss_pred HHHHHh--heeEEEeehhhccch-hh--ccc-cccceeecCcccCCC-ceeEEEEEeccchhHHHHHHhhhhHHHHHHHH
Confidence 556655 678889888876532 22 122 233344444333211 11111 1111111111 11233344445
Q ss_pred hcCCCeEEEEecChHHHHHHHHhCC--------------------------CCccccccCCHHHHHHHHHHHhCCCccEE
Q 008207 360 YSSGGRTIIFTETKESASQLADLLP--------------------------GARALHGDIQQSQREVTLAGFRSGKFMTL 413 (574)
Q Consensus 360 ~~~~~~~lVF~~t~~~~~~l~~~l~--------------------------~~~~lh~~~~~~~r~~~~~~F~~g~~~vL 413 (574)
...+.+.+||+++++.+..++.-|- ..++-|-+++..+..-+-..|..|.+.|+
T Consensus 1356 a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~ 1435 (1674)
T KOG0951|consen 1356 AGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVC 1435 (1674)
T ss_pred hcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEE
Confidence 5678899999999999987775542 22333889999999999999999999999
Q ss_pred EEeccccccCCCCCCcEEE----EeC------CCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHH
Q 008207 414 VATNVAARGLDINDVQLII----QCE------PPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKI 473 (574)
Q Consensus 414 vaTd~~~~Gldi~~v~~VI----~~d------~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i 473 (574)
|...- ..|+-...--+|+ .|| .+.+.....|+.|+|.| .|.|+++.... +.+++++
T Consensus 1436 v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1436 VMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred EEEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHh
Confidence 98765 6777665433333 244 45678899999999999 46899888876 5555443
No 149
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.61 E-value=8.3e-15 Score=135.93 Aligned_cols=152 Identities=20% Similarity=0.201 Sum_probs=103.6
Q ss_pred CCcHHHHHHHHHHhc-------CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHH
Q 008207 131 SLFPIQAMTFDMVLD-------GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (574)
Q Consensus 131 ~~~~~Q~~~i~~il~-------~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv 203 (574)
+|+++|.+++..+.. ++.+++.++||||||.+++..+..... +++|++|+..|+.|+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----------------~~l~~~p~~~l~~Q~ 66 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----------------KVLIVAPNISLLEQW 66 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----------------EEEEEESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----------------ceeEecCHHHHHHHH
Confidence 589999999998883 689999999999999988765555443 389999999999999
Q ss_pred HHHHHHhhCCCCceEE-----------EEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCC-----------ccCCC
Q 008207 204 HEDFDVYGGAVGLTSC-----------CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN-----------IDLSS 261 (574)
Q Consensus 204 ~~~~~~~~~~~~~~~~-----------~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~-----------~~l~~ 261 (574)
.+.+..+......... ...................++++.|...|........ .....
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 146 (184)
T PF04851_consen 67 YDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNK 146 (184)
T ss_dssp HHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGS
T ss_pred HHHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhcccc
Confidence 9999766543211111 1111112222333445678999999999988765321 23456
Q ss_pred ceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCc
Q 008207 262 LKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (574)
Q Consensus 262 ~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~ 305 (574)
..+||+||||++....- +..++. . +...+|+||||++
T Consensus 147 ~~~vI~DEaH~~~~~~~---~~~i~~-~---~~~~~l~lTATp~ 183 (184)
T PF04851_consen 147 FDLVIIDEAHHYPSDSS---YREIIE-F---KAAFILGLTATPF 183 (184)
T ss_dssp ESEEEEETGGCTHHHHH---HHHHHH-S---SCCEEEEEESS-S
T ss_pred CCEEEEehhhhcCCHHH---HHHHHc-C---CCCeEEEEEeCcc
Confidence 78999999998863321 445554 2 2567999999975
No 150
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.57 E-value=4.9e-13 Score=148.72 Aligned_cols=105 Identities=22% Similarity=0.250 Sum_probs=78.9
Q ss_pred CCCeEEEEecChHHHHHHHHhCCCCc--cccccCCHHHHHHHHHHHhCCCc-cEEEEeccccccCCCCCC--cEEEEeCC
Q 008207 362 SGGRTIIFTETKESASQLADLLPGAR--ALHGDIQQSQREVTLAGFRSGKF-MTLVATNVAARGLDINDV--QLIIQCEP 436 (574)
Q Consensus 362 ~~~~~lVF~~t~~~~~~l~~~l~~~~--~lh~~~~~~~r~~~~~~F~~g~~-~vLvaTd~~~~Gldi~~v--~~VI~~d~ 436 (574)
.++++|||++|.+..+.+.+.+.... ..+-......+...++.|+.+.- .++|+|..+++|||+++= ..||...+
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~l 557 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDEREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGL 557 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEec
Confidence 45699999999999999999987322 12333344455588888887554 999999999999999974 77888887
Q ss_pred CCC------------------------------HhHHHHHhcccccCCCcceEEEEECCC
Q 008207 437 PRD------------------------------VEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 437 p~s------------------------------~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
|.- .....|.+||.-|.-...-++++++.+
T Consensus 558 Pfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R 617 (654)
T COG1199 558 PFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKR 617 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEeccc
Confidence 741 335679999999976655556666665
No 151
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.55 E-value=4.3e-12 Score=140.31 Aligned_cols=102 Identities=24% Similarity=0.318 Sum_probs=75.4
Q ss_pred CCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHh----CCCccEEEEeccccccCCCCC--CcEE
Q 008207 362 SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFR----SGKFMTLVATNVAARGLDIND--VQLI 431 (574)
Q Consensus 362 ~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~----~g~~~vLvaTd~~~~Gldi~~--v~~V 431 (574)
.++.+|||++|.+..+.++..|. .-...+|. ..|..+++.|+ .|+-.||++|..+..|||+|+ +++|
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 45569999999999999988875 12233453 35677887776 467789999999999999987 7889
Q ss_pred EEeCCCC----CH--------------------------hHHHHHhcccccCCCcceEEEEECCC
Q 008207 432 IQCEPPR----DV--------------------------EAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 432 I~~d~p~----s~--------------------------~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
|...+|. ++ ..+.|.+||.-|....--++.+++++
T Consensus 610 II~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 610 IITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 9888763 11 13468889999986544456777776
No 152
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.54 E-value=1e-12 Score=142.73 Aligned_cols=280 Identities=12% Similarity=0.106 Sum_probs=167.0
Q ss_pred EccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHH--
Q 008207 152 RARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA-- 229 (574)
Q Consensus 152 ~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~-- 229 (574)
.+-+|||||.+|+-.+-..+..++ ++|||+|...|..|+...|+..+. +-.+..++++.+...
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~~Gk-------------~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~ 230 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLRAGR-------------GALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRY 230 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHHcCC-------------eEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHH
Confidence 334699999999988888777654 499999999999999999986553 245677777766543
Q ss_pred --HHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhc---CCcH---HHHHHHHHhccCccCceEEEEe
Q 008207 230 --QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR---MGFV---EDVELILGKVEDANKVQTLLFS 301 (574)
Q Consensus 230 --~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~---~~~~---~~~~~il~~l~~~~~~q~ll~S 301 (574)
+.........|+|||-..+. ..+.++.+|||||=|.-.- .+.+ .++....... .+..+|+.|
T Consensus 231 ~~w~~~~~G~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~---~~~~lvLgS 300 (665)
T PRK14873 231 RRWLAVLRGQARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQ---HGCALLIGG 300 (665)
T ss_pred HHHHHHhCCCCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHH---cCCcEEEEC
Confidence 33344566899999987773 4688999999999985431 1122 2333333333 267899999
Q ss_pred ccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeC------Cch----hhhhhhhHHHHhhcCCCeEEEEec
Q 008207 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC------SSS----ARSQVIPDIIRCYSSGGRTIIFTE 371 (574)
Q Consensus 302 AT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~------~~~----~~~~~l~~ll~~~~~~~~~lVF~~ 371 (574)
||.+-+....+..- ....+...........+.+.-.-... +.. --..++..+-+....+ ++|||+|
T Consensus 301 aTPSles~~~~~~g---~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~ln 376 (665)
T PRK14873 301 HARTAEAQALVESG---WAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVP 376 (665)
T ss_pred CCCCHHHHHHHhcC---cceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEec
Confidence 99876554333211 11111111100001111111111100 000 0012333333444455 9999988
Q ss_pred ChHHH---------------------------------------------------------------HHHHHhCCCCcc
Q 008207 372 TKESA---------------------------------------------------------------SQLADLLPGARA 388 (574)
Q Consensus 372 t~~~~---------------------------------------------------------------~~l~~~l~~~~~ 388 (574)
.+-.+ +.|...|..+.+
T Consensus 377 RrGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V 456 (665)
T PRK14873 377 RRGYVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPV 456 (665)
T ss_pred CCCCCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCE
Confidence 65443 222222222222
Q ss_pred ccccCCHHHHHHHHHHHhCCCccEEEEec----cccccCCCCCCcEEEEeCC------CC------CHhHHHHHhccccc
Q 008207 389 LHGDIQQSQREVTLAGFRSGKFMTLVATN----VAARGLDINDVQLIIQCEP------PR------DVEAYIHRSGRTGR 452 (574)
Q Consensus 389 lh~~~~~~~r~~~~~~F~~g~~~vLvaTd----~~~~Gldi~~v~~VI~~d~------p~------s~~~yiqr~GR~gR 452 (574)
+.. +++.+++.|. ++.+|||+|. +++ ++++.|+..|. |. ....+.|-+||+||
T Consensus 457 ~r~-----d~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr 525 (665)
T PRK14873 457 VTS-----GGDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRP 525 (665)
T ss_pred EEE-----ChHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcC
Confidence 211 2345788886 5999999998 555 36777766553 21 34566889999999
Q ss_pred CCCcceEEEEECCCchHHH
Q 008207 453 AGNTGVAVMLYDPRKSSVS 471 (574)
Q Consensus 453 ~g~~G~~i~l~~~~~~~~~ 471 (574)
.+..|.+++..+++...+.
T Consensus 526 ~~~~G~V~iq~~p~~~~~~ 544 (665)
T PRK14873 526 RADGGQVVVVAESSLPTVQ 544 (665)
T ss_pred CCCCCEEEEEeCCCCHHHH
Confidence 9999999887666543333
No 153
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.54 E-value=7.3e-13 Score=131.57 Aligned_cols=119 Identities=13% Similarity=0.221 Sum_probs=93.6
Q ss_pred CeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCC-CccEE-EEeccccccCCCCCCcEEEEeCCC
Q 008207 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG-KFMTL-VATNVAARGLDINDVQLIIQCEPP 437 (574)
Q Consensus 364 ~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g-~~~vL-vaTd~~~~Gldi~~v~~VI~~d~p 437 (574)
-+.|||.+.....+.+.-.|. .+.-+.|+|++..|...++.|.+. .++|+ ++-.+.+..+|+-..++|+..|+-
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPW 718 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPW 718 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeeccc
Confidence 367888888888887777776 445689999999999999999874 66664 455777788999999999999999
Q ss_pred CCHhHHHHHhcccccCCC--cceEEEEECCC--chHHHHHHHHhCCcce
Q 008207 438 RDVEAYIHRSGRTGRAGN--TGVAVMLYDPR--KSSVSKIERESGVKFE 482 (574)
Q Consensus 438 ~s~~~yiqr~GR~gR~g~--~G~~i~l~~~~--~~~~~~i~~~~~~~~~ 482 (574)
|++.--.|.-.|.+|.|+ +=.++.|+-++ +..+-.+++.....|+
T Consensus 719 WNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mih 767 (791)
T KOG1002|consen 719 WNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIH 767 (791)
T ss_pred ccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhh
Confidence 999998898899999887 45677777766 6666666665433333
No 154
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.54 E-value=1.8e-14 Score=153.95 Aligned_cols=318 Identities=18% Similarity=0.235 Sum_probs=194.3
Q ss_pred CCCCcHHHHHHHHHHh----cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHH
Q 008207 129 IESLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (574)
Q Consensus 129 ~~~~~~~Q~~~i~~il----~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (574)
-.++.+||...+.++. ++-+-|+...+|-|||.+-.- ++..+..... ..+| .||++|+..|.+ |.
T Consensus 392 GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIs-LitYLmE~K~--------~~GP-~LvivPlstL~N-W~ 460 (1157)
T KOG0386|consen 392 GGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTIS-LITYLMEHKQ--------MQGP-FLIIVPLSTLVN-WS 460 (1157)
T ss_pred CCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHH-HHHHHHHHcc--------cCCC-eEEeccccccCC-ch
Confidence 3488999999998865 445789999999999986433 3333332221 1122 589999988877 56
Q ss_pred HHHHHhhCCCCceEEEEeCCcchHHH--HHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHH
Q 008207 205 EDFDVYGGAVGLTSCCLYGGAPYHAQ--EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282 (574)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~gg~~~~~~--~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~ 282 (574)
.+|..|+. .+......|......- ........+|+++|++.+.. .+..+.--++.++||||.|+|.+.. ..+
T Consensus 461 ~Ef~kWaP--Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~--~KL 534 (1157)
T KOG0386|consen 461 SEFPKWAP--SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAI--CKL 534 (1157)
T ss_pred hhcccccc--ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchh--hHH
Confidence 77877763 3444444443221111 12223679999999988865 1111222346789999999985432 222
Q ss_pred HHHHHhccCccCceEEEEecc-----------------------------------------------------------
Q 008207 283 ELILGKVEDANKVQTLLFSAT----------------------------------------------------------- 303 (574)
Q Consensus 283 ~~il~~l~~~~~~q~ll~SAT----------------------------------------------------------- 303 (574)
...+..--. ....+++++|
T Consensus 535 t~~L~t~y~--~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkV 612 (1157)
T KOG0386|consen 535 TDTLNTHYR--AQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKV 612 (1157)
T ss_pred HHHhhcccc--chhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHh
Confidence 222221101 1233444444
Q ss_pred ----------------CchhHHHHHHHhc-----------ccCC-eEEEE-ecCccccc--------ccceeEEEEe---
Q 008207 304 ----------------LPSWVKHISTKFL-----------KSDK-KTIDL-VGNEKMKA--------STNVRHIVLP--- 343 (574)
Q Consensus 304 ----------------~~~~~~~~~~~~~-----------~~~~-~~i~~-~~~~~~~~--------~~~i~~~~~~--- 343 (574)
+|..+..+.+.-+ .... ..++- .+...... ..-..|-+++
T Consensus 613 LRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~v 692 (1157)
T KOG0386|consen 613 LRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANV 692 (1157)
T ss_pred hhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhh
Confidence 1111111111000 0000 00000 00000000 0000000000
Q ss_pred -------------CCchhhhhhhhHHHHhh-cCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHH
Q 008207 344 -------------CSSSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGF 405 (574)
Q Consensus 344 -------------~~~~~~~~~l~~ll~~~-~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F 405 (574)
.....++.+|..++-.+ ..++++|.||....-..-+..+|. ....+.|.....+|-..++.|
T Consensus 693 e~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~F 772 (1157)
T KOG0386|consen 693 ENSYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIF 772 (1157)
T ss_pred ccccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHh
Confidence 11234556666666433 468899999999999988888887 567789999999999999999
Q ss_pred hCC---CccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceE--EEEECC
Q 008207 406 RSG---KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA--VMLYDP 465 (574)
Q Consensus 406 ~~g---~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~--i~l~~~ 465 (574)
..- -+.+|.+|.+.+.|+|+...+.||.||..|++....|+--|+.|.|+...+ +.+.+-
T Consensus 773 N~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv 837 (1157)
T KOG0386|consen 773 NAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITV 837 (1157)
T ss_pred cCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehh
Confidence 863 456788999999999999999999999999999999999999999986655 444443
No 155
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.52 E-value=5.4e-13 Score=146.23 Aligned_cols=310 Identities=20% Similarity=0.165 Sum_probs=177.3
Q ss_pred CCCcHHHHHHHHHHhc--------CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHH
Q 008207 130 ESLFPIQAMTFDMVLD--------GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il~--------~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~ 201 (574)
..-+.||.+++..+.. |-=++-.|.||+|||++=+= |+..+... ..+.|..|-.-.|.|-.
T Consensus 407 ~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd~----------~~g~RfsiALGLRTLTL 475 (1110)
T TIGR02562 407 HPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRDD----------KQGARFAIALGLRSLTL 475 (1110)
T ss_pred CCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCCC----------CCCceEEEEccccceec
Confidence 3457899999988763 22267779999999997433 33333332 35668889999999999
Q ss_pred HHHHHHHHhhCCCCceEEEEeCCcchHHHHH-------------------------------------------HhcC--
Q 008207 202 QVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF-------------------------------------------KLKK-- 236 (574)
Q Consensus 202 Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~-------------------------------------------~l~~-- 236 (574)
|.-+.++.-..--.-...+++|+.....-.. .+..
T Consensus 476 QTGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~ 555 (1110)
T TIGR02562 476 QTGHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDD 555 (1110)
T ss_pred cchHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccCh
Confidence 9988887644333444556666643221110 0000
Q ss_pred ------CCcEEEEChHHHHHhHh--cCCc-cCC----CceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEecc
Q 008207 237 ------GIDVVIGTPGRIKDHIE--RGNI-DLS----SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (574)
Q Consensus 237 ------~~~IlV~Tp~~l~~~l~--~~~~-~l~----~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT 303 (574)
...|+|||+..++.... ++.. .+. .-+.|||||+|.+- ......+..++..+... ...+++||||
T Consensus 556 k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD-~~~~~~L~rlL~w~~~l-G~~VlLmSAT 633 (1110)
T TIGR02562 556 KEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYE-PEDLPALLRLVQLAGLL-GSRVLLSSAT 633 (1110)
T ss_pred hhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCC-HHHHHHHHHHHHHHHHc-CCCEEEEeCC
Confidence 16899999999988763 2211 111 13679999999763 22233344444422221 4689999999
Q ss_pred CchhHHHHH-HHhcc---------c---CCeEEEEecCccc-----------------------------ccccceeEEE
Q 008207 304 LPSWVKHIS-TKFLK---------S---DKKTIDLVGNEKM-----------------------------KASTNVRHIV 341 (574)
Q Consensus 304 ~~~~~~~~~-~~~~~---------~---~~~~i~~~~~~~~-----------------------------~~~~~i~~~~ 341 (574)
+|+.+.... .-|.. . .+..|...--++. ..+..-.-..
T Consensus 634 LP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i 713 (1110)
T TIGR02562 634 LPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAEL 713 (1110)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEE
Confidence 998764433 22210 1 1111111110000 0000011112
Q ss_pred EeCCchh-----hhh-----hhhHHHH---hh----c-CCCe---EEEEecChHHHHHHHHhCC----------CCcccc
Q 008207 342 LPCSSSA-----RSQ-----VIPDIIR---CY----S-SGGR---TIIFTETKESASQLADLLP----------GARALH 390 (574)
Q Consensus 342 ~~~~~~~-----~~~-----~l~~ll~---~~----~-~~~~---~lVF~~t~~~~~~l~~~l~----------~~~~lh 390 (574)
++++... ... +...++. .+ . .+.+ .+|-++++..+-.++..|. .+.++|
T Consensus 714 ~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yH 793 (1110)
T TIGR02562 714 LSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYH 793 (1110)
T ss_pred eecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEec
Confidence 2332221 111 1111111 11 1 1222 3566666666655555543 366789
Q ss_pred ccCCHHHHHHHHHHH----------------------hC----CCccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHH
Q 008207 391 GDIQQSQREVTLAGF----------------------RS----GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444 (574)
Q Consensus 391 ~~~~~~~r~~~~~~F----------------------~~----g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yi 444 (574)
+......|..+.+.. .+ +...|+|+|.+.+-|+|+. .+++| --|.+....+
T Consensus 794 Sr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~--~~~~~~~sli 870 (1110)
T TIGR02562 794 AQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAI--ADPSSMRSII 870 (1110)
T ss_pred ccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeee--eccCcHHHHH
Confidence 998877776655432 12 4678999999999999984 45554 3467799999
Q ss_pred HHhcccccCCC
Q 008207 445 HRSGRTGRAGN 455 (574)
Q Consensus 445 qr~GR~gR~g~ 455 (574)
||+||+.|.|.
T Consensus 871 Q~aGR~~R~~~ 881 (1110)
T TIGR02562 871 QLAGRVNRHRL 881 (1110)
T ss_pred HHhhccccccc
Confidence 99999999875
No 156
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.50 E-value=3e-14 Score=113.17 Aligned_cols=70 Identities=47% Similarity=0.752 Sum_probs=67.7
Q ss_pred CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCC
Q 008207 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454 (574)
Q Consensus 385 ~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g 454 (574)
.+..+||++++.+|..+++.|+++...|||+|+++++|+|++.+++||.+++|++...|.|++||++|.|
T Consensus 13 ~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 13 KVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 5678999999999999999999999999999999999999999999999999999999999999999976
No 157
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.46 E-value=2.1e-11 Score=135.86 Aligned_cols=72 Identities=19% Similarity=0.293 Sum_probs=59.0
Q ss_pred CCCCcHHHHHHHHH----HhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHH
Q 008207 129 IESLFPIQAMTFDM----VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (574)
Q Consensus 129 ~~~~~~~Q~~~i~~----il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (574)
|..++|.|.+.+.. +..++++++.||||+|||++.+.|++.++...+ ..+++++.+.|..-..|+.
T Consensus 8 y~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~----------~~~kIiy~sRThsQl~q~i 77 (705)
T TIGR00604 8 YEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP----------EVRKIIYASRTHSQLEQAT 77 (705)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc----------ccccEEEEcccchHHHHHH
Confidence 66679999887755 447899999999999999999999998876432 2246899999999889999
Q ss_pred HHHHHh
Q 008207 205 EDFDVY 210 (574)
Q Consensus 205 ~~~~~~ 210 (574)
+++++.
T Consensus 78 ~Elk~~ 83 (705)
T TIGR00604 78 EELRKL 83 (705)
T ss_pred HHHHhh
Confidence 998874
No 158
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.43 E-value=3.1e-12 Score=132.03 Aligned_cols=120 Identities=18% Similarity=0.293 Sum_probs=102.1
Q ss_pred hhhhhhhhHHHHhh-cCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCC-ccEEEEecccc
Q 008207 347 SARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK-FMTLVATNVAA 420 (574)
Q Consensus 347 ~~~~~~l~~ll~~~-~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~-~~vLvaTd~~~ 420 (574)
+.++..|..+|..+ ..+.++|+|+...+..+.+.++|. ....+.|.....+|..+++.|+... +-+|++|.+.+
T Consensus 1027 SgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGG 1106 (1185)
T ss_pred ccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCc
Confidence 45666676666544 467899999999999999999986 4556889999999999999998754 45688999999
Q ss_pred ccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcc--eEEEEECCC
Q 008207 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG--VAVMLYDPR 466 (574)
Q Consensus 421 ~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G--~~i~l~~~~ 466 (574)
-||++...+.||+||..|++..-.|...||+|.|+.. .+|.++...
T Consensus 1107 LGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1107 LGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred ccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccc
Confidence 9999999999999999999999999999999999855 467777765
No 159
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.42 E-value=9.6e-13 Score=138.96 Aligned_cols=314 Identities=18% Similarity=0.244 Sum_probs=195.0
Q ss_pred HHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHH-H----
Q 008207 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD-V---- 209 (574)
Q Consensus 135 ~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~-~---- 209 (574)
+-...+..+..+.-+++.+.||+|||..+.--||+.+..+..- ...-+.+-.|+|-.++-+++.+. .
T Consensus 382 ~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g--------~~~na~v~qprrisaisiaerva~er~e~ 453 (1282)
T KOG0921|consen 382 YRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNG--------ASFNAVVSQPRRISAISLAERVANERGEE 453 (1282)
T ss_pred HHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcccc--------ccccceeccccccchHHHHHHHHHhhHHh
Confidence 3445566667788899999999999999999999998876442 22237788899988888887763 2
Q ss_pred hhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHhc
Q 008207 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289 (574)
Q Consensus 210 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l 289 (574)
.+..++..+.-. .......--|+.||-|-++..++++ +..+.++|+||.|+..-. .+-+..++..+
T Consensus 454 ~g~tvgy~vRf~---------Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~--~dfll~~lr~m 519 (1282)
T KOG0921|consen 454 VGETCGYNVRFD---------SATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVD--TDFVLIVLREM 519 (1282)
T ss_pred hccccccccccc---------ccccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccc--hHHHHHHHHhh
Confidence 222222222110 0011122469999999999988874 556789999999975321 12222222222
Q ss_pred -cCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcc-----------------ccccccee-------------
Q 008207 290 -EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK-----------------MKASTNVR------------- 338 (574)
Q Consensus 290 -~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~-----------------~~~~~~i~------------- 338 (574)
.-.+.+..+++|||+..+ +...|+..-+.. .+.+... +......+
T Consensus 520 ~~ty~dl~v~lmsatIdTd---~f~~~f~~~p~~-~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~d 595 (1282)
T KOG0921|consen 520 ISTYRDLRVVLMSATIDTD---LFTNFFSSIPDV-TVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVD 595 (1282)
T ss_pred hccchhhhhhhhhcccchh---hhhhhhccccce-eeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhh
Confidence 112245566666665432 112222111110 0000000 00000000
Q ss_pred ----EEEEeCCc-------------------hhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC-----------
Q 008207 339 ----HIVLPCSS-------------------SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----------- 384 (574)
Q Consensus 339 ----~~~~~~~~-------------------~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----------- 384 (574)
..-..|.. ....+.+...+....-.+-++||.+.....-.|...+.
T Consensus 596 dK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y 675 (1282)
T KOG0921|consen 596 DKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKY 675 (1282)
T ss_pred hcccccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhc
Confidence 00000000 01112222222223355789999999999988888775
Q ss_pred CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEeCCC------------------CCHhHHHHH
Q 008207 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP------------------RDVEAYIHR 446 (574)
Q Consensus 385 ~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p------------------~s~~~yiqr 446 (574)
.+..+|+.+...++.++++....|..+++++|.++...+.+.++.+||..+.- .+....+||
T Consensus 676 ~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr 755 (1282)
T KOG0921|consen 676 EILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQR 755 (1282)
T ss_pred ccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhh
Confidence 56789999999999999999999999999999999999999999888865532 245677999
Q ss_pred hcccccCCCcceEEEEECCCchHHHHHHHHh
Q 008207 447 SGRTGRAGNTGVAVMLYDPRKSSVSKIERES 477 (574)
Q Consensus 447 ~GR~gR~g~~G~~i~l~~~~~~~~~~i~~~~ 477 (574)
.||+||. ++|.|+.+.+.. .+..+++..
T Consensus 756 ~gr~grv-R~G~~f~lcs~a--rF~~l~~~~ 783 (1282)
T KOG0921|consen 756 KGRAGRV-RPGFCFHLCSRA--RFEALEDHG 783 (1282)
T ss_pred cccCcee-cccccccccHHH--HHHHHHhcC
Confidence 9999998 699999988743 444555443
No 160
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.33 E-value=1.4e-10 Score=123.26 Aligned_cols=118 Identities=16% Similarity=0.218 Sum_probs=96.7
Q ss_pred hhhhhhHHHHh-hcCCCeEEEEecChHHHHHHHHhCC--------------------------CCccccccCCHHHHHHH
Q 008207 349 RSQVIPDIIRC-YSSGGRTIIFTETKESASQLADLLP--------------------------GARALHGDIQQSQREVT 401 (574)
Q Consensus 349 ~~~~l~~ll~~-~~~~~~~lVF~~t~~~~~~l~~~l~--------------------------~~~~lh~~~~~~~r~~~ 401 (574)
+.-+|..+|+. ..-|.++|||..+....+.+..+|. ....|.|.....+|...
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 34456666653 3467899999999999988888874 24458899999999999
Q ss_pred HHHHhCC----CccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcc--eEEEEECCC
Q 008207 402 LAGFRSG----KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG--VAVMLYDPR 466 (574)
Q Consensus 402 ~~~F~~g----~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G--~~i~l~~~~ 466 (574)
...|.+- -.-.||+|-+.+-|||+-+.+-||.||..|+|.--+|-+=|+.|.|+.. .+|.|+...
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqG 1277 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQG 1277 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcc
Confidence 9999862 2346999999999999999999999999999999999999999999865 446666654
No 161
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.33 E-value=4.1e-11 Score=129.34 Aligned_cols=320 Identities=20% Similarity=0.238 Sum_probs=196.8
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhC
Q 008207 133 FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG 212 (574)
Q Consensus 133 ~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~ 212 (574)
+|+=.+.+-.+.....-|+-..||-|||++..+|+.-..+.+.. +.+++..--||..-++++..+..
T Consensus 80 ~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkg-------------VhvVTvNdYLA~RDae~m~~l~~ 146 (822)
T COG0653 80 RHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKG-------------VHVVTVNDYLARRDAEWMGPLYE 146 (822)
T ss_pred ChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCC-------------cEEeeehHHhhhhCHHHHHHHHH
Confidence 33334455555556667889999999999999999766655543 78999999999999999999999
Q ss_pred CCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHH-HhHhc------CCccCCCceEEEecCchhhh----------c
Q 008207 213 AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIK-DHIER------GNIDLSSLKFRVLDEADEML----------R 275 (574)
Q Consensus 213 ~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~-~~l~~------~~~~l~~~~~lVlDEah~~l----------~ 275 (574)
+.|+++++...+.+....... ..+||..+|-..|- |.+.. .......+.+.|+||+|-++ .
T Consensus 147 ~LGlsvG~~~~~m~~~ek~~a--Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiIS 224 (822)
T COG0653 147 FLGLSVGVILAGMSPEEKRAA--YACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIIS 224 (822)
T ss_pred HcCCceeeccCCCChHHHHHH--HhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeee
Confidence 999999999999976655444 34999999988772 22211 12235578999999999875 1
Q ss_pred C------CcHHHHHHHHHhccCcc------CceEEEEecc-Cch--------------h------HHH-H-HHHhcccCC
Q 008207 276 M------GFVEDVELILGKVEDAN------KVQTLLFSAT-LPS--------------W------VKH-I-STKFLKSDK 320 (574)
Q Consensus 276 ~------~~~~~~~~il~~l~~~~------~~q~ll~SAT-~~~--------------~------~~~-~-~~~~~~~~~ 320 (574)
. .++..+..+...+.... +.+.+.|+-. +.. . +.. + +...+..+.
T Consensus 225 G~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~ 304 (822)
T COG0653 225 GPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDV 304 (822)
T ss_pred cccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCC
Confidence 1 12444444443332210 1122222221 000 0 000 0 000111111
Q ss_pred eEEEE------ecCcc------------------------------------------------------------cccc
Q 008207 321 KTIDL------VGNEK------------------------------------------------------------MKAS 334 (574)
Q Consensus 321 ~~i~~------~~~~~------------------------------------------------------------~~~~ 334 (574)
.+|.- .+... ...-
T Consensus 305 dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~i 384 (822)
T COG0653 305 DYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVI 384 (822)
T ss_pred eeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhc
Confidence 11110 00000 0001
Q ss_pred cceeEEEEeC----------------CchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCCCCccccccCCH--H
Q 008207 335 TNVRHIVLPC----------------SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQ--S 396 (574)
Q Consensus 335 ~~i~~~~~~~----------------~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~~~~lh~~~~~--~ 396 (574)
.++...+++. ....-..++..+...+..+.|+||-+.+.+..+.++..|....+-|--+.. .
T Consensus 385 Y~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h 464 (822)
T COG0653 385 YGLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH 464 (822)
T ss_pred cCCceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH
Confidence 1111122221 122333456667777889999999999999999999999855554433321 2
Q ss_pred HHHHHHHHHhCCCccEEEEeccccccCCCCCCc-----------EEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECC
Q 008207 397 QREVTLAGFRSGKFMTLVATNVAARGLDINDVQ-----------LIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465 (574)
Q Consensus 397 ~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~-----------~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~ 465 (574)
.|+.-+-.+..-.-.|-|||++|+||-||.--. +||-...-.|..---|--||+||.|-+|.+-.|++-
T Consensus 465 ~~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSl 544 (822)
T COG0653 465 AREAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSL 544 (822)
T ss_pred HHHHHHHhhcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhh
Confidence 444444444433447899999999999986322 466555555666666889999999999999777775
Q ss_pred Cc
Q 008207 466 RK 467 (574)
Q Consensus 466 ~~ 467 (574)
..
T Consensus 545 eD 546 (822)
T COG0653 545 ED 546 (822)
T ss_pred HH
Confidence 53
No 162
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.30 E-value=1.1e-10 Score=134.86 Aligned_cols=119 Identities=17% Similarity=0.284 Sum_probs=99.6
Q ss_pred hhhhhhhHHH-H-hhcCCC--eEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCC--CccEEEEec
Q 008207 348 ARSQVIPDII-R-CYSSGG--RTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG--KFMTLVATN 417 (574)
Q Consensus 348 ~~~~~l~~ll-~-~~~~~~--~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g--~~~vLvaTd 417 (574)
.+...+..++ . ....+. ++|||++......-+...+. ....++|.++...|...++.|.++ ..-+++++.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 4566666666 2 334555 89999999999988888776 466799999999999999999985 556677788
Q ss_pred cccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceE--EEEECCC
Q 008207 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA--VMLYDPR 466 (574)
Q Consensus 418 ~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~--i~l~~~~ 466 (574)
+++.|+|+...++||+||+.|++....|...|+.|.|+...+ +.++..+
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~ 822 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRG 822 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCC
Confidence 999999999999999999999999999999999999987654 6666665
No 163
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.28 E-value=3.5e-10 Score=121.52 Aligned_cols=286 Identities=19% Similarity=0.217 Sum_probs=173.2
Q ss_pred CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCc
Q 008207 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA 225 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~ 225 (574)
..-.++.||+|||||.+..-++-+.+... ..++|+|+.++.|+.+.+..|+..+- .++....-.++.
T Consensus 49 ~~V~vVRSpMGTGKTtaLi~wLk~~l~~~------------~~~VLvVShRrSL~~sL~~rf~~~~l-~gFv~Y~d~~~~ 115 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTALIRWLKDALKNP------------DKSVLVVSHRRSLTKSLAERFKKAGL-SGFVNYLDSDDY 115 (824)
T ss_pred CCeEEEECCCCCCcHHHHHHHHHHhccCC------------CCeEEEEEhHHHHHHHHHHHHhhcCC-Ccceeeeccccc
Confidence 44578999999999998766555444322 23599999999999999999875431 122211111111
Q ss_pred chHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHH------HHHHHHHh-ccCccCceEE
Q 008207 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVE------DVELILGK-VEDANKVQTL 298 (574)
Q Consensus 226 ~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~------~~~~il~~-l~~~~~~q~l 298 (574)
.+. ....+-+++..+.|...-. -.+.++++|||||+-..+..-|.. ++..++.. +.. ...+|
T Consensus 116 ~i~------~~~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~--ak~VI 184 (824)
T PF02399_consen 116 IID------GRPYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRN--AKTVI 184 (824)
T ss_pred ccc------ccccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHh--CCeEE
Confidence 110 0125677777777765432 246679999999999887543222 22222322 233 35789
Q ss_pred EEeccCchhHHHHHHHhcccCCeEEEEecCccccccccee--EEEE----------------------------------
Q 008207 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR--HIVL---------------------------------- 342 (574)
Q Consensus 299 l~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~--~~~~---------------------------------- 342 (574)
++-||+....-++...+. .. ..|.++.+.. ...+.. +.++
T Consensus 185 ~~DA~ln~~tvdFl~~~R-p~-~~i~vI~n~y--~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (824)
T PF02399_consen 185 VMDADLNDQTVDFLASCR-PD-ENIHVIVNTY--ASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTA 260 (824)
T ss_pred EecCCCCHHHHHHHHHhC-CC-CcEEEEEeee--ecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCcccc
Confidence 999999999888888864 22 2233222221 000000 0000
Q ss_pred -eCCchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEec
Q 008207 343 -PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (574)
Q Consensus 343 -~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd 417 (574)
.............++.....+.++-||++|...++.+++... .+..++|.-+..+ + +. =++++|++.|.
T Consensus 261 ~~~~~~~~~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~--W~~~~VviYT~ 334 (824)
T PF02399_consen 261 TAAISNDETTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ES--WKKYDVVIYTP 334 (824)
T ss_pred ccccccchhhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-cc--ccceeEEEEec
Confidence 000112234455556666678899999999999888887765 5566666655442 1 22 26789999999
Q ss_pred cccccCCCCCCc--EEEEeCCC----CCHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 418 VAARGLDINDVQ--LIIQCEPP----RDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 418 ~~~~Gldi~~v~--~VI~~d~p----~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
+..-|+++.... -|.-|=-| .+..+..|++||.-... ....++.++..
T Consensus 335 ~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~~ 388 (824)
T PF02399_consen 335 VITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDAS 388 (824)
T ss_pred eEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEecc
Confidence 999999997553 24444222 23456899999994443 45555555543
No 164
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.28 E-value=7.5e-11 Score=122.26 Aligned_cols=113 Identities=12% Similarity=0.163 Sum_probs=82.9
Q ss_pred CCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhC--CCccEEE-EeccccccCCCCCCcEEEEe
Q 008207 362 SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS--GKFMTLV-ATNVAARGLDINDVQLIIQC 434 (574)
Q Consensus 362 ~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~--g~~~vLv-aTd~~~~Gldi~~v~~VI~~ 434 (574)
...+++|...-.....-+...+. ....+||....++|..+++.|.. |..+|++ +-.+.+-|||+-+.+|+|..
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILV 824 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEE
Confidence 44566665444444444444444 45679999999999999999964 5556654 44677899999999999999
Q ss_pred CCCCCHhHHHHHhcccccCCCcceE--EEEECCC--chHHHHHH
Q 008207 435 EPPRDVEAYIHRSGRTGRAGNTGVA--VMLYDPR--KSSVSKIE 474 (574)
Q Consensus 435 d~p~s~~~yiqr~GR~gR~g~~G~~--i~l~~~~--~~~~~~i~ 474 (574)
|+-|++.-=.|...|.-|.|+...+ +.|+... +..+..++
T Consensus 825 DlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQ 868 (901)
T KOG4439|consen 825 DLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQ 868 (901)
T ss_pred ecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHH
Confidence 9999999999999999999987655 4455544 44444443
No 165
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.20 E-value=8.9e-11 Score=100.28 Aligned_cols=138 Identities=17% Similarity=0.146 Sum_probs=80.9
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCC
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg 224 (574)
.|+-.++-..+|+|||.-.+--++..... ++.|+|||.|||.++..+++.++. .++++....-+
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~------------~~~rvLvL~PTRvva~em~~aL~~----~~~~~~t~~~~ 66 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK------------RRLRVLVLAPTRVVAEEMYEALKG----LPVRFHTNARM 66 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH------------TT--EEEEESSHHHHHHHHHHTTT----SSEEEESTTSS
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH------------ccCeEEEecccHHHHHHHHHHHhc----CCcccCceeee
Confidence 45557888999999998655444443332 233699999999999999888753 23333221111
Q ss_pred cchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccC
Q 008207 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304 (574)
Q Consensus 225 ~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~ 304 (574)
. ....+.-|-|+|.+.+.+.+.+ ...+.+++++|+||||-+ |..-..- ...+..+.......+|++|||.
T Consensus 67 ~-------~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~-Dp~sIA~-rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 67 R-------THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFT-DPTSIAA-RGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp -----------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT---SHHHHHH-HHHHHHHHHTTS-EEEEEESS-
T ss_pred c-------cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccC-CHHHHhh-heeHHHhhhccCeeEEEEeCCC
Confidence 0 1234567899999999888877 456789999999999975 2211111 1122222222246799999999
Q ss_pred chhH
Q 008207 305 PSWV 308 (574)
Q Consensus 305 ~~~~ 308 (574)
|-..
T Consensus 137 PG~~ 140 (148)
T PF07652_consen 137 PGSE 140 (148)
T ss_dssp TT--
T ss_pred CCCC
Confidence 8644
No 166
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.20 E-value=1.9e-10 Score=115.54 Aligned_cols=154 Identities=19% Similarity=0.155 Sum_probs=93.7
Q ss_pred HHHHHHHHHh-------------cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHH
Q 008207 135 IQAMTFDMVL-------------DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (574)
Q Consensus 135 ~Q~~~i~~il-------------~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~ 201 (574)
+|..++.+++ ..+.+|++..+|+|||+..+..+.......... ..-.+|||||. .+..
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~--------~~~~~LIv~P~-~l~~ 71 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQR--------GEKKTLIVVPS-SLLS 71 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTS--------S-S-EEEEE-T-TTHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccc--------cccceeEeecc-chhh
Confidence 5777777663 346799999999999988665554333222211 11138999999 8889
Q ss_pred HHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHH-----HhHhcCCccCCCceEEEecCchhhhcC
Q 008207 202 QVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIK-----DHIERGNIDLSSLKFRVLDEADEMLRM 276 (574)
Q Consensus 202 Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~-----~~l~~~~~~l~~~~~lVlDEah~~l~~ 276 (574)
||..++..+.....+++..+.|+..............+|+|+|++.+. .... .+.--++++||+||+|.+-+.
T Consensus 72 ~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~--~l~~~~~~~vIvDEaH~~k~~ 149 (299)
T PF00176_consen 72 QWKEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKE--DLKQIKWDRVIVDEAHRLKNK 149 (299)
T ss_dssp HHHHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTH--HHHTSEEEEEEETTGGGGTTT
T ss_pred hhhhhhccccccccccccccccccccccccccccccceeeecccccccccccccccc--ccccccceeEEEecccccccc
Confidence 999999999865567777666665222223333456899999999998 1111 111234899999999998433
Q ss_pred CcHHHHHHHHHhccCccCceEEEEeccC
Q 008207 277 GFVEDVELILGKVEDANKVQTLLFSATL 304 (574)
Q Consensus 277 ~~~~~~~~il~~l~~~~~~q~ll~SAT~ 304 (574)
. ......+..+. ....+++|||.
T Consensus 150 ~--s~~~~~l~~l~---~~~~~lLSgTP 172 (299)
T PF00176_consen 150 D--SKRYKALRKLR---ARYRWLLSGTP 172 (299)
T ss_dssp T--SHHHHHHHCCC---ECEEEEE-SS-
T ss_pred c--ccccccccccc---cceEEeecccc
Confidence 3 22333343444 45789999995
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.14 E-value=5.1e-10 Score=110.82 Aligned_cols=73 Identities=22% Similarity=0.212 Sum_probs=57.3
Q ss_pred CCcHHHHHHH----HHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHH
Q 008207 131 SLFPIQAMTF----DMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (574)
Q Consensus 131 ~~~~~Q~~~i----~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (574)
.|+|.|.+.+ ..+..|+++++.||||+|||++|++|++..+...... ....+++|.++|..+..|...+
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-------~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-------IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-------ccccceeEEeccHHHHHHHHHH
Confidence 4699999944 5556889999999999999999999999877653321 0223689999999998888777
Q ss_pred HHHh
Q 008207 207 FDVY 210 (574)
Q Consensus 207 ~~~~ 210 (574)
++++
T Consensus 81 l~~~ 84 (289)
T smart00488 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7655
No 168
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.14 E-value=5.1e-10 Score=110.82 Aligned_cols=73 Identities=22% Similarity=0.212 Sum_probs=57.3
Q ss_pred CCcHHHHHHH----HHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHH
Q 008207 131 SLFPIQAMTF----DMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (574)
Q Consensus 131 ~~~~~Q~~~i----~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (574)
.|+|.|.+.+ ..+..|+++++.||||+|||++|++|++..+...... ....+++|.++|..+..|...+
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-------~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-------IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-------ccccceeEEeccHHHHHHHHHH
Confidence 4699999944 5556889999999999999999999999877653321 0223689999999998888777
Q ss_pred HHHh
Q 008207 207 FDVY 210 (574)
Q Consensus 207 ~~~~ 210 (574)
++++
T Consensus 81 l~~~ 84 (289)
T smart00489 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7655
No 169
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.06 E-value=4e-09 Score=101.64 Aligned_cols=130 Identities=22% Similarity=0.310 Sum_probs=97.9
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHH
Q 008207 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (574)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (574)
.|+ .|++.|..++=.+..|+ |+...||-|||++..+|++-....+.. |-|++.+..||.+=+++
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~-------------V~vvT~NdyLA~RD~~~ 137 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKG-------------VHVVTSNDYLAKRDAEE 137 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS--------------EEEEESSHHHHHHHHHH
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCC-------------cEEEeccHHHhhccHHH
Confidence 344 89999998887776666 999999999999988888777666543 88999999999999999
Q ss_pred HHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHH-hHhc----CC--ccCCCceEEEecCchhhh
Q 008207 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKD-HIER----GN--IDLSSLKFRVLDEADEML 274 (574)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~-~l~~----~~--~~l~~~~~lVlDEah~~l 274 (574)
+..+....|+++.+++++.+........ .++|+++|.+.+.- .|.. +. ...+.+.++||||||.|+
T Consensus 138 ~~~~y~~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 138 MRPFYEFLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHHHHTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHHHHHhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999999999999999998864433333 37899999998853 3322 11 125789999999999986
No 170
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.78 E-value=9.2e-07 Score=100.99 Aligned_cols=289 Identities=15% Similarity=0.184 Sum_probs=161.5
Q ss_pred CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcc
Q 008207 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~ 226 (574)
+..++.=-||||||++.... ...+... ...|.+++|+-+++|-.|+.++|..++....... ...+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~-A~~l~~~----------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s 338 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKL-ARLLLEL----------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAES 338 (962)
T ss_pred CceEEEeecCCchHHHHHHH-HHHHHhc----------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccC
Confidence 45899999999999974333 3333332 2356799999999999999999998875443322 2334
Q ss_pred hHHHHHHhcCC-CcEEEEChHHHHHhHhcC-Cc-cCCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEecc
Q 008207 227 YHAQEFKLKKG-IDVVIGTPGRIKDHIERG-NI-DLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (574)
Q Consensus 227 ~~~~~~~l~~~-~~IlV~Tp~~l~~~l~~~-~~-~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT 303 (574)
...-...+..+ ..|+|+|-..|-..+... .. .-.+=-+||+||||+- ..| ..-..+-..++ +...++||+|
T Consensus 339 ~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS-Q~G--~~~~~~~~~~~---~a~~~gFTGT 412 (962)
T COG0610 339 TSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS-QYG--ELAKLLKKALK---KAIFIGFTGT 412 (962)
T ss_pred HHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc-ccc--HHHHHHHHHhc---cceEEEeeCC
Confidence 43444445433 489999999998877553 11 1222346899999974 333 33333344444 3689999999
Q ss_pred CchhH-----HHHHHHhcccCCeEEEEecCcccccccceeEEEEeC---C--c---------------------------
Q 008207 304 LPSWV-----KHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC---S--S--------------------------- 346 (574)
Q Consensus 304 ~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~---~--~--------------------------- 346 (574)
.-..- ......|+ ........ ......+...|... . .
T Consensus 413 Pi~~~d~~tt~~~fg~yl-----h~Y~i~da-I~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 486 (962)
T COG0610 413 PIFKEDKDTTKDVFGDYL-----HTYTITDA-IRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKK 486 (962)
T ss_pred ccccccccchhhhhccee-----EEEecchh-hccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHH
Confidence 63211 11222222 11110000 00000000000000 0 0
Q ss_pred ------------hhhhhhhhHH----HHhhcCCCeEEEEecChHHHHHHHHhCC-------------C------------
Q 008207 347 ------------SARSQVIPDI----IRCYSSGGRTIIFTETKESASQLADLLP-------------G------------ 385 (574)
Q Consensus 347 ------------~~~~~~l~~l----l~~~~~~~~~lVF~~t~~~~~~l~~~l~-------------~------------ 385 (574)
.....+..++ ......+.++++.+.++..+..+.+... .
T Consensus 487 ~~~~~~~~~~~~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 566 (962)
T COG0610 487 KTKNLEFLAMLAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETD 566 (962)
T ss_pred HHhhhhHHhcchHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccc
Confidence 0000111111 1111234567777777774444443321 0
Q ss_pred --CccccccCCHHHHHHHHHHH--hCCCccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCC----cc
Q 008207 386 --ARALHGDIQQSQREVTLAGF--RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN----TG 457 (574)
Q Consensus 386 --~~~lh~~~~~~~r~~~~~~F--~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~----~G 457 (574)
....|... ...+.....+| .....++||.+|++-.|.|-|.+.. +-.|-|.-....+|.+-||.|.-. .|
T Consensus 567 ~~~~~~~~~~-~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~T-mYvDK~Lk~H~L~QAisRtNR~~~~~K~~G 644 (962)
T COG0610 567 FDKKQSHAKL-KDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNT-LYVDKPLKYHNLIQAISRTNRVFPGKKKFG 644 (962)
T ss_pred hhhhhhhHHH-HHHHhhhhhhhcCcCCCCCEEEEEccccccCCccccce-EEeccccccchHHHHHHHhccCCCCCCCCc
Confidence 00012222 22233444443 4578999999999999999997655 457888888899999999999632 46
Q ss_pred eEEEEEC
Q 008207 458 VAVMLYD 464 (574)
Q Consensus 458 ~~i~l~~ 464 (574)
..+.|..
T Consensus 645 ~IVDf~g 651 (962)
T COG0610 645 LIVDFRG 651 (962)
T ss_pred EEEECcc
Confidence 6666666
No 171
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.54 E-value=2.1e-06 Score=95.50 Aligned_cols=66 Identities=11% Similarity=-0.049 Sum_probs=50.9
Q ss_pred CCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEecc
Q 008207 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (574)
Q Consensus 236 ~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT 303 (574)
....|+++||..|..-+..+.+++..+..|||||||++....-..-+..++..-++ ..-+.+|||.
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~--~gfIkafSds 71 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNK--TGFIKAFSDN 71 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCC--CcceEEecCC
Confidence 34679999999999888899999999999999999998755544455555544443 3456677777
No 172
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.53 E-value=1.6e-06 Score=91.42 Aligned_cols=103 Identities=18% Similarity=0.263 Sum_probs=85.0
Q ss_pred CCeEEEEecChHHHHHHHHhCC----------------------CCccccccCCHHHHHHHHHHHhC--CC-ccEEEEec
Q 008207 363 GGRTIIFTETKESASQLADLLP----------------------GARALHGDIQQSQREVTLAGFRS--GK-FMTLVATN 417 (574)
Q Consensus 363 ~~~~lVF~~t~~~~~~l~~~l~----------------------~~~~lh~~~~~~~r~~~~~~F~~--g~-~~vLvaTd 417 (574)
+.++|||..+......+...|. ...-+.|..+..+|.+.+++|.. |- .-+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 3589999999988888888875 12247788899999999999976 22 36788999
Q ss_pred cccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceE--EEEECC
Q 008207 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA--VMLYDP 465 (574)
Q Consensus 418 ~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~--i~l~~~ 465 (574)
...-||++-..+-+|.||.-|++.--.|.+-|.-|.|+..-| |.++-.
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD 848 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMD 848 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhh
Confidence 999999999899999999999999999999999999987766 445543
No 173
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.48 E-value=1.3e-06 Score=97.14 Aligned_cols=143 Identities=17% Similarity=0.231 Sum_probs=86.3
Q ss_pred CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHH---------HhhCCCCce
Q 008207 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD---------VYGGAVGLT 217 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~---------~~~~~~~~~ 217 (574)
.++.+..+||||||.+|+-.|++....-.. .++||+||+.++-..+...+. .......+.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~-----------~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~ 128 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGL-----------FKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIE 128 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCC-----------cEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeE
Confidence 478999999999999999888876654322 359999999988887775544 111222344
Q ss_pred EEEEeCCc-------chHHHHHHhc-------CCCcEEEEChHHHHHhHh-c---------CC-ccC---CC-ceEEEec
Q 008207 218 SCCLYGGA-------PYHAQEFKLK-------KGIDVVIGTPGRIKDHIE-R---------GN-IDL---SS-LKFRVLD 268 (574)
Q Consensus 218 ~~~~~gg~-------~~~~~~~~l~-------~~~~IlV~Tp~~l~~~l~-~---------~~-~~l---~~-~~~lVlD 268 (574)
...+.++. ++..+.+... +..+|+|+|-+.|..-.. + +. ..+ .. =-+||+|
T Consensus 129 ~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiD 208 (986)
T PRK15483 129 LYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIID 208 (986)
T ss_pred EEEEecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEE
Confidence 44443322 2222222221 257999999999865221 1 00 111 11 1368999
Q ss_pred CchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCch
Q 008207 269 EADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 269 Eah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~ 306 (574)
|.|++-.. ...+..| ..+. +.-++.||||.+.
T Consensus 209 EPh~~~~~--~k~~~~i-~~ln---pl~~lrysAT~~~ 240 (986)
T PRK15483 209 EPHRFPRD--NKFYQAI-EALK---PQMIIRFGATFPD 240 (986)
T ss_pred CCCCCCcc--hHHHHHH-HhcC---cccEEEEeeecCC
Confidence 99998432 2233444 3343 2346779999986
No 174
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.33 E-value=2e-06 Score=82.80 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=49.1
Q ss_pred CCcHHHHHHHHHHhcCCc-EEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHH
Q 008207 131 SLFPIQAMTFDMVLDGSD-LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (574)
Q Consensus 131 ~~~~~Q~~~i~~il~~~d-vi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (574)
++.+-|.+++..++.... .++.||+|||||.+..- ++..+..... ......+.++|+++|+..-+.++.+.+..
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~----~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLAS-IIAQLLQRFK----SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHH-HHHHH-----------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHH-HHHHhccchh----hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999998 99999999999965333 3333311000 00012344699999999999999888766
No 175
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.31 E-value=2.4e-07 Score=100.92 Aligned_cols=137 Identities=24% Similarity=0.300 Sum_probs=99.6
Q ss_pred CcHHHHHHHHHHh-cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHh
Q 008207 132 LFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (574)
Q Consensus 132 ~~~~Q~~~i~~il-~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (574)
..|+|.+.+-.+. ...++++-+|||+|||++|-+.++..+...+. .++++++|-..|+..-.+.+...
T Consensus 928 fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~-----------~kvvyIap~kalvker~~Dw~~r 996 (1230)
T KOG0952|consen 928 FNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPG-----------SKVVYIAPDKALVKERSDDWSKR 996 (1230)
T ss_pred cCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCC-----------ccEEEEcCCchhhcccccchhhh
Confidence 3445555543332 34578899999999999999999887776543 35999999999999888888655
Q ss_pred hCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhc--CCccCCCceEEEecCchhhhcCCcHHHHH
Q 008207 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER--GNIDLSSLKFRVLDEADEMLRMGFVEDVE 283 (574)
Q Consensus 211 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~--~~~~l~~~~~lVlDEah~~l~~~~~~~~~ 283 (574)
....|+++.-+.|....... . ...++|+|+||.++-.+..+ ..-.+.++..+|+||.|.+. .+.++.++
T Consensus 997 ~~~~g~k~ie~tgd~~pd~~--~-v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg-~~rgPVle 1067 (1230)
T KOG0952|consen 997 DELPGIKVIELTGDVTPDVK--A-VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLG-EDRGPVLE 1067 (1230)
T ss_pred cccCCceeEeccCccCCChh--h-eecCceEEcccccccCccccccchhhhccccceeeccccccc-CCCcceEE
Confidence 55558999999988766522 2 23489999999999776652 33357889999999999774 34333333
No 176
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.26 E-value=8.1e-06 Score=76.21 Aligned_cols=121 Identities=21% Similarity=0.252 Sum_probs=71.9
Q ss_pred CCcHHHHHHHHHHhcCC--cEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHH
Q 008207 131 SLFPIQAMTFDMVLDGS--DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (574)
Q Consensus 131 ~~~~~Q~~~i~~il~~~--dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~ 208 (574)
++++-|.+++..++.+. -+++.|+.|+|||.+. -.+...+... +.++++++||...+..+.+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~~------------g~~v~~~apT~~Aa~~L~~~~~ 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEAA------------GKRVIGLAPTNKAAKELREKTG 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHHT------------T--EEEEESSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHhC------------CCeEEEECCcHHHHHHHHHhhC
Confidence 47889999999997554 4778899999999863 3344444432 2359999999888887665521
Q ss_pred HhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCC----ccCCCceEEEecCchhhhcCCcHHHHHH
Q 008207 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN----IDLSSLKFRVLDEADEMLRMGFVEDVEL 284 (574)
Q Consensus 209 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~----~~l~~~~~lVlDEah~~l~~~~~~~~~~ 284 (574)
+. ..|-.+++....... ..+...++||||||-.+. ...+..
T Consensus 68 -------~~------------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ 112 (196)
T PF13604_consen 68 -------IE------------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLAR 112 (196)
T ss_dssp -------S-------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHH
T ss_pred -------cc------------------------hhhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHH
Confidence 11 122222222211111 115567899999999764 566777
Q ss_pred HHHhccCccCceEEEE
Q 008207 285 ILGKVEDANKVQTLLF 300 (574)
Q Consensus 285 il~~l~~~~~~q~ll~ 300 (574)
++..++.. ..+++++
T Consensus 113 ll~~~~~~-~~klilv 127 (196)
T PF13604_consen 113 LLRLAKKS-GAKLILV 127 (196)
T ss_dssp HHHHS-T--T-EEEEE
T ss_pred HHHHHHhc-CCEEEEE
Confidence 88777652 3455444
No 177
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.20 E-value=3.4e-06 Score=78.23 Aligned_cols=144 Identities=19% Similarity=0.316 Sum_probs=72.4
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHH---H
Q 008207 129 IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH---E 205 (574)
Q Consensus 129 ~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~---~ 205 (574)
+...++-|..++.+++..+-+++.||.|||||+.++..+++.+..+.- -+++|+-|..+....+- .
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~-----------~kiii~Rp~v~~~~~lGflpG 70 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEY-----------DKIIITRPPVEAGEDLGFLPG 70 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS------------SEEEEEE-S--TT----SS--
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCC-----------cEEEEEecCCCCccccccCCC
Confidence 456788999999999988889999999999999988888888877432 24788888765321110 0
Q ss_pred HH-HHhhCCCC-c--eEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHH
Q 008207 206 DF-DVYGGAVG-L--TSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVED 281 (574)
Q Consensus 206 ~~-~~~~~~~~-~--~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~ 281 (574)
.+ +++..+.. + ....+.+... ...+.....|-+.++.-+ ||. .+.+ .+||+|||..+. ..+
T Consensus 71 ~~~eK~~p~~~p~~d~l~~~~~~~~----~~~~~~~~~Ie~~~~~~i-----RGr-t~~~-~~iIvDEaQN~t----~~~ 135 (205)
T PF02562_consen 71 DLEEKMEPYLRPIYDALEELFGKEK----LEELIQNGKIEIEPLAFI-----RGR-TFDN-AFIIVDEAQNLT----PEE 135 (205)
T ss_dssp -------TTTHHHHHHHTTTS-TTC----HHHHHHTTSEEEEEGGGG-----TT---B-S-EEEEE-SGGG------HHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhChHh----HHHHhhcCeEEEEehhhh-----cCc-cccc-eEEEEecccCCC----HHH
Confidence 00 00000000 0 0000001111 111112244555544333 111 2333 899999999775 678
Q ss_pred HHHHHHhccCccCceEEEE
Q 008207 282 VELILGKVEDANKVQTLLF 300 (574)
Q Consensus 282 ~~~il~~l~~~~~~q~ll~ 300 (574)
+..++..+.. +.+++++
T Consensus 136 ~k~ilTR~g~--~skii~~ 152 (205)
T PF02562_consen 136 LKMILTRIGE--GSKIIIT 152 (205)
T ss_dssp HHHHHTTB-T--T-EEEEE
T ss_pred HHHHHcccCC--CcEEEEe
Confidence 8899988876 4555554
No 178
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.16 E-value=1e-05 Score=87.40 Aligned_cols=141 Identities=23% Similarity=0.273 Sum_probs=90.4
Q ss_pred CCCcHHHHHHHHHHh----cCCcEEEEccCCChhHHHhHHHHHHHHhCCC---CCC----cc---------------cCC
Q 008207 130 ESLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGP---TKA----SK---------------KTG 183 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il----~~~dvi~~a~TGsGKTla~~lpil~~l~~~~---~~~----~~---------------~~~ 183 (574)
.+|+|.|...+..++ ...+.++.+|||+|||++.+-..|.+..... ... .+ ...
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e 99 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEE 99 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhh
Confidence 378999988776655 5688999999999999875544443322211 000 00 000
Q ss_pred -------CCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCc-------------------------------
Q 008207 184 -------YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA------------------------------- 225 (574)
Q Consensus 184 -------~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~------------------------------- 225 (574)
+...|++.+-+-|-.-..|+.+++++.+-. ++..++....
T Consensus 100 ~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~--vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~ 177 (945)
T KOG1132|consen 100 AGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR--VKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCH 177 (945)
T ss_pred hcCccccccCCceEEEecchHHHHHHHHHHHhhcCCC--CceEEeecchhhccCHHHhhhhcchhhhhHHHhhccccccc
Confidence 013678888888888888999999876533 2222221111
Q ss_pred ----------------------------------chHHHHHHhcCCCcEEEEChHHHHHhHhcCC--ccCCCceEEEecC
Q 008207 226 ----------------------------------PYHAQEFKLKKGIDVVIGTPGRIKDHIERGN--IDLSSLKFRVLDE 269 (574)
Q Consensus 226 ----------------------------------~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~--~~l~~~~~lVlDE 269 (574)
+|.. .+.+...++|++|-+..|+|-..|+. ++|.+ .+||+||
T Consensus 178 f~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfa-SR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDE 255 (945)
T KOG1132|consen 178 FYKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFA-SRELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDE 255 (945)
T ss_pred ccccccccccccccCCCcccHHHHHHhCccCcCCcchh-hhhhcccCcEEEechhhhcCHhhhccccccccc-cEEEEec
Confidence 0000 03344458999999999999887765 55555 7899999
Q ss_pred chhhh
Q 008207 270 ADEML 274 (574)
Q Consensus 270 ah~~l 274 (574)
||.|-
T Consensus 256 AHNiE 260 (945)
T KOG1132|consen 256 AHNIE 260 (945)
T ss_pred cccHH
Confidence 99975
No 179
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.13 E-value=3e-05 Score=81.03 Aligned_cols=81 Identities=21% Similarity=0.194 Sum_probs=63.6
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHH
Q 008207 125 KSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (574)
Q Consensus 125 ~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (574)
...|+..+..-|..|+.++|++.=.|++||+|+|||.+-.--+++.+.... ..+|+.+|+.--+.|++
T Consensus 404 s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~------------~~VLvcApSNiAVDqLa 471 (935)
T KOG1802|consen 404 SVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHA------------GPVLVCAPSNIAVDQLA 471 (935)
T ss_pred cCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcC------------CceEEEcccchhHHHHH
Confidence 345777888999999999999999999999999999976666665554432 24999999999999999
Q ss_pred HHHHHhhCCCCceEEEE
Q 008207 205 EDFDVYGGAVGLTSCCL 221 (574)
Q Consensus 205 ~~~~~~~~~~~~~~~~~ 221 (574)
+.+.+. +++++-+
T Consensus 472 eKIh~t----gLKVvRl 484 (935)
T KOG1802|consen 472 EKIHKT----GLKVVRL 484 (935)
T ss_pred HHHHhc----CceEeee
Confidence 888654 3555444
No 180
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.11 E-value=2e-05 Score=71.59 Aligned_cols=103 Identities=18% Similarity=0.259 Sum_probs=75.3
Q ss_pred CCCeEEEEecChHHHHHHHHhCCCC------ccccccCCHHHHHHHHHHHhCCCccEEEEec--cccccCCCCC--CcEE
Q 008207 362 SGGRTIIFTETKESASQLADLLPGA------RALHGDIQQSQREVTLAGFRSGKFMTLVATN--VAARGLDIND--VQLI 431 (574)
Q Consensus 362 ~~~~~lVF~~t~~~~~~l~~~l~~~------~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd--~~~~Gldi~~--v~~V 431 (574)
.++.+|||++|....+.+...+... .++.. ....+..+++.|+.+.-.||+|+. .++.|||+++ ++.|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 4589999999999999999998732 23333 356889999999999999999998 9999999996 7789
Q ss_pred EEeCCCCC----H--------------------------hHHHHHhcccccCCCcceEEEEECCC
Q 008207 432 IQCEPPRD----V--------------------------EAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 432 I~~d~p~s----~--------------------------~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
|..++|.. + ....|.+||+-|....--++.+++++
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 99998841 1 12358899999998766667777876
No 181
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.09 E-value=1.7e-05 Score=86.36 Aligned_cols=113 Identities=14% Similarity=0.170 Sum_probs=88.6
Q ss_pred CeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCC-CccE-EEEeccccccCCCCCCcEEEEeCCC
Q 008207 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG-KFMT-LVATNVAARGLDINDVQLIIQCEPP 437 (574)
Q Consensus 364 ~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g-~~~v-LvaTd~~~~Gldi~~v~~VI~~d~p 437 (574)
.+++||++-...+.-+...+. ....+.|.|+...|.+.+..|..+ ..+| +++.-+..-|+++-...||+..|+=
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 489999998888877776665 456788999999999999999864 2333 5567888899999999999999999
Q ss_pred CCHhHHHHHhcccccCCCcceE--EEEECCC--chHHHHHHHH
Q 008207 438 RDVEAYIHRSGRTGRAGNTGVA--VMLYDPR--KSSVSKIERE 476 (574)
Q Consensus 438 ~s~~~yiqr~GR~gR~g~~G~~--i~l~~~~--~~~~~~i~~~ 476 (574)
|++..--|.+-|+.|.|+.-.+ ..|.-.+ +..+.+|.+.
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~ 662 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEK 662 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHH
Confidence 9999999999999999986654 2333333 4455555443
No 182
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.06 E-value=7.4e-05 Score=72.55 Aligned_cols=178 Identities=16% Similarity=0.120 Sum_probs=113.5
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh----------cCCcEEEEccCCChhHHHhHHHHHHHHhCCCC
Q 008207 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVL----------DGSDLVGRARTGQGKTLAFVLPILESLTNGPT 176 (574)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il----------~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~ 176 (574)
.|...-.+.|+..++. . ..++..|.+++-.+. .+.-.++-..||.||--...--|++....++.
T Consensus 19 ~P~~~y~~~lp~~~~~----~--g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~ 92 (303)
T PF13872_consen 19 PPDPTYRLHLPEEVID----S--GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRK 92 (303)
T ss_pred CCCCCcccCCCHHHHh----c--ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCC
Confidence 3444445566665543 2 246888888886654 23458888999999998777778888777643
Q ss_pred CCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCC
Q 008207 177 KASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN 256 (574)
Q Consensus 177 ~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~ 256 (574)
++|+++.+-.|-....+.++.++.. .+.+..+.. ..+. ....-.-.|+++|+..|...-..+.
T Consensus 93 ------------r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~-~~~~---~~~~~~~GvlF~TYs~L~~~~~~~~ 155 (303)
T PF13872_consen 93 ------------RAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNK-FKYG---DIIRLKEGVLFSTYSTLISESQSGG 155 (303)
T ss_pred ------------ceEEEECChhhhhHHHHHHHHhCCC-cccceechh-hccC---cCCCCCCCccchhHHHHHhHHhccC
Confidence 4899999999999999999988754 343333322 1000 0011235699999999977643211
Q ss_pred ---cc-------C--CCceEEEecCchhhhcCCc--------HHHHHHHHHhccCccCceEEEEeccCchhHHH
Q 008207 257 ---ID-------L--SSLKFRVLDEADEMLRMGF--------VEDVELILGKVEDANKVQTLLFSATLPSWVKH 310 (574)
Q Consensus 257 ---~~-------l--~~~~~lVlDEah~~l~~~~--------~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~ 310 (574)
.. + ..=.+||+||||.+-+..- ...+..+-..+|. -+++.+|||-..+..+
T Consensus 156 ~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~---ARvvY~SATgasep~N 226 (303)
T PF13872_consen 156 KYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPN---ARVVYASATGASEPRN 226 (303)
T ss_pred CccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCC---CcEEEecccccCCCce
Confidence 01 1 1124899999999876532 1233334445554 5699999997664443
No 183
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.94 E-value=5.1e-05 Score=77.87 Aligned_cols=108 Identities=17% Similarity=0.214 Sum_probs=67.0
Q ss_pred cEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcch
Q 008207 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227 (574)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~ 227 (574)
-++|.|..|||||+..+- ++..+... ..+..++++++...|...+...+..-..
T Consensus 3 v~~I~G~aGTGKTvla~~-l~~~l~~~----------~~~~~~~~l~~n~~l~~~l~~~l~~~~~--------------- 56 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALN-LAKELQNS----------EEGKKVLYLCGNHPLRNKLREQLAKKYN--------------- 56 (352)
T ss_pred EEEEEecCCcCHHHHHHH-HHHHhhcc----------ccCCceEEEEecchHHHHHHHHHhhhcc---------------
Confidence 478999999999987443 33334111 1233589999999999988887754320
Q ss_pred HHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCC-------cHHHHHHHHHh
Q 008207 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG-------FVEDVELILGK 288 (574)
Q Consensus 228 ~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~-------~~~~~~~il~~ 288 (574)
.......+..+..+...+.........+++|||||||+|...+ ....+..++..
T Consensus 57 -------~~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 57 -------PKLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred -------cchhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0002233444444444333222356789999999999998732 23556666654
No 184
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.93 E-value=5.7e-05 Score=78.68 Aligned_cols=64 Identities=23% Similarity=0.312 Sum_probs=52.6
Q ss_pred CCcHHHHHHHHHHhcCCc-EEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHH
Q 008207 131 SLFPIQAMTFDMVLDGSD-LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (574)
Q Consensus 131 ~~~~~Q~~~i~~il~~~d-vi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~ 207 (574)
.+.+-|..++....+.++ .++.||+|+|||.+...-|.+.+..+. ++||.+||.+-+..+.+.+
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k-------------~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKK-------------RVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCC-------------eEEEEcCchHHHHHHHHHh
Confidence 566889999999888866 778999999999987777777666543 5999999999888888754
No 185
>PRK10536 hypothetical protein; Provisional
Probab=97.89 E-value=0.00034 Score=66.83 Aligned_cols=47 Identities=19% Similarity=0.118 Sum_probs=39.3
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhC
Q 008207 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173 (574)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~ 173 (574)
.++...+..|...+.++.++.-+++.|++|||||+......++.+..
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~ 101 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH 101 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 35667788999999999988889999999999999877777766644
No 186
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.87 E-value=4.3e-05 Score=72.95 Aligned_cols=87 Identities=26% Similarity=0.352 Sum_probs=66.0
Q ss_pred CCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCc-chHHHHHHhc-CCCcEEEEChHHHHHhHhcCCccCCCc
Q 008207 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA-PYHAQEFKLK-KGIDVVIGTPGRIKDHIERGNIDLSSL 262 (574)
Q Consensus 185 ~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~-~~~~~~~~l~-~~~~IlV~Tp~~l~~~l~~~~~~l~~~ 262 (574)
...|.+|||+..---|..+.+.++.|. ..+..++-++.-. ....|...+. ..++|.||||+|+..+++.+.+.++++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~-~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFK-GKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhc-cCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 457889999998666666666666553 1224444455443 5667777776 478999999999999999999999999
Q ss_pred eEEEecCchh
Q 008207 263 KFRVLDEADE 272 (574)
Q Consensus 263 ~~lVlDEah~ 272 (574)
.+||||--|.
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999997664
No 187
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.85 E-value=0.00015 Score=79.71 Aligned_cols=66 Identities=23% Similarity=0.258 Sum_probs=52.4
Q ss_pred CCcHHHHHHHHHHhcC-CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHH
Q 008207 131 SLFPIQAMTFDMVLDG-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (574)
Q Consensus 131 ~~~~~Q~~~i~~il~~-~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (574)
.+.+.|..++..++.. ..+++.||+|||||.+..-.+.+.+..+ .++|+++||..-+.++.+.+..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g-------------~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRG-------------LRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcC-------------CCEEEEcCcHHHHHHHHHHHHh
Confidence 5689999999998876 6788999999999987554454444332 2599999999999998888765
No 188
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.84 E-value=0.00013 Score=68.33 Aligned_cols=150 Identities=21% Similarity=0.279 Sum_probs=94.1
Q ss_pred ccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhc---CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 008207 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLD---GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (574)
Q Consensus 111 ~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~---~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (574)
|+....+.+++=.+.. + .-+++.|.+....+.+ |++.+.+.-+|.|||.+ ++|++..+..+...
T Consensus 5 w~p~~~P~wLl~E~e~-~-iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~---------- 71 (229)
T PF12340_consen 5 WDPMEYPDWLLFEIES-N-ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSR---------- 71 (229)
T ss_pred CCchhChHHHHHHHHc-C-ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCc----------
Confidence 4444556666544432 2 3789999999888774 68999999999999987 67888777765432
Q ss_pred CeEEEEeCcHHHHHHHHHHHH-HhhCCCCceEEEE--eCCcchHH----HH----HHhcCCCcEEEEChHHHHHhHhc--
Q 008207 188 PSVLVLLPTRELAKQVHEDFD-VYGGAVGLTSCCL--YGGAPYHA----QE----FKLKKGIDVVIGTPGRIKDHIER-- 254 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~-~~~~~~~~~~~~~--~gg~~~~~----~~----~~l~~~~~IlV~Tp~~l~~~l~~-- 254 (574)
-+-+++|. .|..|....+. +++.-.+-.+..+ .-...... .. ......-.|+++||+.++.+...
T Consensus 72 -LvrviVpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~l 149 (229)
T PF12340_consen 72 -LVRVIVPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGL 149 (229)
T ss_pred -EEEEEcCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHH
Confidence 26677776 79999998886 4554333333322 22222111 11 12234567999999998765422
Q ss_pred -----CCc-----------cCCCceEEEecCchhhhc
Q 008207 255 -----GNI-----------DLSSLKFRVLDEADEMLR 275 (574)
Q Consensus 255 -----~~~-----------~l~~~~~lVlDEah~~l~ 275 (574)
+.. ++.....=|+||+|..+.
T Consensus 150 e~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 150 ERLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 110 123333458999998763
No 189
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.78 E-value=0.00027 Score=76.88 Aligned_cols=140 Identities=19% Similarity=0.160 Sum_probs=83.1
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhh
Q 008207 132 LFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (574)
Q Consensus 132 ~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~ 211 (574)
..++|..++...+.++-+++.|++|+|||.+..- ++..+..... ....++++.+||..-|..+.+.+....
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~-ll~~l~~~~~--------~~~~~i~l~APTgkAA~rL~e~~~~~~ 223 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTVAK-LLAALIQLAD--------GERCRIRLAAPTGKAAARLTESLGKAL 223 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH-HHHHHHHhcC--------CCCcEEEEECCcHHHHHHHHHHHHhhh
Confidence 3589999999999999999999999999986322 2222221100 122468999999999988887765433
Q ss_pred CCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhc------CCccCCCceEEEecCchhhhcCCcHHHHHHH
Q 008207 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER------GNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285 (574)
Q Consensus 212 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~------~~~~l~~~~~lVlDEah~~l~~~~~~~~~~i 285 (574)
...++. . ... .....-..|--+|+..... ..-+.-.+++||||||-++ + ...+..+
T Consensus 224 ~~~~~~-----~-----~~~----~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-d---~~lm~~l 285 (615)
T PRK10875 224 RQLPLT-----D-----EQK----KRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-D---LPMMARL 285 (615)
T ss_pred hccccc-----h-----hhh----hcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-c---HHHHHHH
Confidence 222110 0 000 0011122333333322111 1112334689999999955 3 5667778
Q ss_pred HHhccCccCceEEEE
Q 008207 286 LGKVEDANKVQTLLF 300 (574)
Q Consensus 286 l~~l~~~~~~q~ll~ 300 (574)
+..++. ..++|++
T Consensus 286 l~al~~--~~rlIlv 298 (615)
T PRK10875 286 IDALPP--HARVIFL 298 (615)
T ss_pred HHhccc--CCEEEEe
Confidence 888876 5566665
No 190
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.75 E-value=0.00011 Score=79.31 Aligned_cols=70 Identities=17% Similarity=0.193 Sum_probs=54.4
Q ss_pred CCccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCC--CcceE-----------EEEECCC-chHHHHH
Q 008207 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG--NTGVA-----------VMLYDPR-KSSVSKI 473 (574)
Q Consensus 408 g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g--~~G~~-----------i~l~~~~-~~~~~~i 473 (574)
...+.+++--++-.|-|=|+|-.++-.....|..+=.|-+||.-|.. +.|.= .++++.. ...+..+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 45789999999999999999999999999999999999999999952 33322 2344544 5566666
Q ss_pred HHHh
Q 008207 474 ERES 477 (574)
Q Consensus 474 ~~~~ 477 (574)
.+++
T Consensus 562 qkEI 565 (985)
T COG3587 562 QKEI 565 (985)
T ss_pred HHHH
Confidence 5543
No 191
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.74 E-value=0.00044 Score=75.13 Aligned_cols=137 Identities=17% Similarity=0.129 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhcCCcEEEEccCCChhHHHh--HHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhh
Q 008207 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAF--VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (574)
Q Consensus 134 ~~Q~~~i~~il~~~dvi~~a~TGsGKTla~--~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~ 211 (574)
++|..++..++.++-+++.|+.|||||.+. ++.++...... ...+++++.+||---|..+.+.+....
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~----------~~~~~I~l~APTGkAA~rL~e~~~~~~ 217 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPK----------QGKLRIALAAPTGKAAARLAESLRKAV 217 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccc----------cCCCcEEEECCcHHHHHHHHHHHHhhh
Confidence 799999999999999999999999999853 22223222111 012469999999888887777665432
Q ss_pred CCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhc------CCccCCCceEEEecCchhhhcCCcHHHHHHH
Q 008207 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER------GNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285 (574)
Q Consensus 212 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~------~~~~l~~~~~lVlDEah~~l~~~~~~~~~~i 285 (574)
...+.. . . ......+-..|--+|+..... ..-+...+++||||||-++ + ...+..+
T Consensus 218 ~~l~~~---------~-~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv-d---~~l~~~l 279 (586)
T TIGR01447 218 KNLAAA---------E-A----LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV-D---LPLMAKL 279 (586)
T ss_pred cccccc---------h-h----hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC-C---HHHHHHH
Confidence 211110 0 0 000011223343333322110 1112335799999999955 3 4567778
Q ss_pred HHhccCccCceEEEE
Q 008207 286 LGKVEDANKVQTLLF 300 (574)
Q Consensus 286 l~~l~~~~~~q~ll~ 300 (574)
+..++. ..++|++
T Consensus 280 l~al~~--~~rlIlv 292 (586)
T TIGR01447 280 LKALPP--NTKLILL 292 (586)
T ss_pred HHhcCC--CCEEEEE
Confidence 888876 5566654
No 192
>PF13245 AAA_19: Part of AAA domain
Probab=97.73 E-value=0.00013 Score=56.48 Aligned_cols=53 Identities=32% Similarity=0.402 Sum_probs=37.4
Q ss_pred CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHH
Q 008207 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~ 207 (574)
+.-+++.|++|||||...+--+...+..... . +.++|+++||+..+.++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~--------~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARAD--------P-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcC--------C-CCeEEEECCCHHHHHHHHHHH
Confidence 4446669999999997655555554432110 1 336999999999999988877
No 193
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.60 E-value=0.00089 Score=74.90 Aligned_cols=128 Identities=23% Similarity=0.220 Sum_probs=76.1
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHH
Q 008207 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (574)
..+++-|.+++..+..++-+++.|+.|||||.+. -.++..+.... ....+++++||-.-|.++.+..
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~----------~~~~v~l~ApTg~AA~~L~e~~-- 388 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELG----------GLLPVGLAAPTGRAAKRLGEVT-- 388 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcC----------CCceEEEEeCchHHHHHHHHhc--
Confidence 4799999999999999999999999999999753 23333333221 0124888999987776554432
Q ss_pred hhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHhc
Q 008207 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289 (574)
Q Consensus 210 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l 289 (574)
+... ...... +... ++..... ..-.....++||||||+.+. ...+..++..+
T Consensus 389 -----g~~a------~Tih~l---L~~~-------~~~~~~~---~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~ 440 (720)
T TIGR01448 389 -----GLTA------STIHRL---LGYG-------PDTFRHN---HLEDPIDCDLLIVDESSMMD----TWLALSLLAAL 440 (720)
T ss_pred -----CCcc------ccHHHH---hhcc-------CCccchh---hhhccccCCEEEEeccccCC----HHHHHHHHHhC
Confidence 1111 111111 1000 0000000 00012457899999999653 44567777777
Q ss_pred cCccCceEEEE
Q 008207 290 EDANKVQTLLF 300 (574)
Q Consensus 290 ~~~~~~q~ll~ 300 (574)
+. ..+++++
T Consensus 441 ~~--~~rlilv 449 (720)
T TIGR01448 441 PD--HARLLLV 449 (720)
T ss_pred CC--CCEEEEE
Confidence 65 5566665
No 194
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.44 E-value=0.00089 Score=69.72 Aligned_cols=152 Identities=21% Similarity=0.222 Sum_probs=79.9
Q ss_pred EEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHH-hhCCCCceEEEEeCCcchHH
Q 008207 151 GRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV-YGGAVGLTSCCLYGGAPYHA 229 (574)
Q Consensus 151 ~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~-~~~~~~~~~~~~~gg~~~~~ 229 (574)
....||||||++.+-.|++....+-. ..|+.|..-....-....|.. .....-+.-...+++....-
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr------------~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~i 69 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYR------------NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEI 69 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchh------------hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeee
Confidence 35789999999988888887766532 267777765554433332211 00000011111222221110
Q ss_pred H----HHHhcCCCcEEEEChHHHHHhHhcC---Cc---cCCCceE-EEecCchhhhcCC---------cHHHHHH-HHHh
Q 008207 230 Q----EFKLKKGIDVVIGTPGRIKDHIERG---NI---DLSSLKF-RVLDEADEMLRMG---------FVEDVEL-ILGK 288 (574)
Q Consensus 230 ~----~~~l~~~~~IlV~Tp~~l~~~l~~~---~~---~l~~~~~-lVlDEah~~l~~~---------~~~~~~~-il~~ 288 (574)
. ...-..+..|+++|...|...+.+. .+ ++.+..+ ++-||||++-... -...++. ++-.
T Consensus 70 kkvn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la 149 (812)
T COG3421 70 KKVNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLA 149 (812)
T ss_pred eeecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHH
Confidence 0 0112356789999999998777542 22 2444444 4669999984211 1111222 2223
Q ss_pred ccCccCceEEEEeccCchhHHHHHHHh
Q 008207 289 VEDANKVQTLLFSATLPSWVKHISTKF 315 (574)
Q Consensus 289 l~~~~~~q~ll~SAT~~~~~~~~~~~~ 315 (574)
+...+.--++.||||.|. -..+...|
T Consensus 150 ~~~nkd~~~lef~at~~k-~k~v~~ky 175 (812)
T COG3421 150 LEQNKDNLLLEFSATIPK-EKSVEDKY 175 (812)
T ss_pred HhcCCCceeehhhhcCCc-cccHHHHh
Confidence 333334456779999994 34455555
No 195
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.29 E-value=0.00092 Score=67.35 Aligned_cols=123 Identities=21% Similarity=0.123 Sum_probs=75.7
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhh
Q 008207 132 LFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (574)
Q Consensus 132 ~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~ 211 (574)
+++-|.+++.. ..+.++|.|..|||||.+.+.-++..+..... ...++|++++|+..|..+.+.+....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~---------~~~~Il~lTft~~aa~e~~~ri~~~l 69 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGV---------PPERILVLTFTNAAAQEMRERIRELL 69 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSS---------TGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccC---------ChHHheecccCHHHHHHHHHHHHHhc
Confidence 57889999988 78899999999999999877777766665532 22359999999999999998887643
Q ss_pred CCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCC--CceEEEecCch
Q 008207 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLS--SLKFRVLDEAD 271 (574)
Q Consensus 212 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~--~~~~lVlDEah 271 (574)
....... ...............+.|+|-..+...+.+...... .-.+-++|+..
T Consensus 70 ~~~~~~~------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 70 EEEQQES------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp HHCCHCC------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred Ccccccc------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 2211000 000011112222356889998877665543221111 12456677766
No 196
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.27 E-value=0.0052 Score=69.11 Aligned_cols=122 Identities=20% Similarity=0.167 Sum_probs=72.6
Q ss_pred CCCcHHHHHHHHHHhcC-CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHH
Q 008207 130 ESLFPIQAMTFDMVLDG-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il~~-~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~ 208 (574)
..+++-|..++..++.+ +-+++.|++|+|||... -.+...+... +.++++++||---|..+.+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~~------------g~~V~~~ApTg~Aa~~L~~~-- 415 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEAA------------GYRVIGAALSGKAAEGLQAE-- 415 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHhC------------CCeEEEEeCcHHHHHHHHhc--
Confidence 36899999999998874 66899999999999753 2334333321 23589999996666554322
Q ss_pred HhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHh
Q 008207 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (574)
Q Consensus 209 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~ 288 (574)
.++... |-.+++..+.++...+...++||||||-.+. ...+..++..
T Consensus 416 -----~g~~a~------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~----~~~~~~Ll~~ 462 (744)
T TIGR02768 416 -----SGIESR------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVG----SRQMARVLKE 462 (744)
T ss_pred -----cCCcee------------------------eHHHHHhhhccCcccCCCCcEEEEECcccCC----HHHHHHHHHH
Confidence 222211 1112211122233346678999999999653 3344555554
Q ss_pred ccCccCceEEEE
Q 008207 289 VEDANKVQTLLF 300 (574)
Q Consensus 289 l~~~~~~q~ll~ 300 (574)
.... ..++|++
T Consensus 463 ~~~~-~~kliLV 473 (744)
T TIGR02768 463 AEEA-GAKVVLV 473 (744)
T ss_pred HHhc-CCEEEEE
Confidence 3321 3455544
No 197
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.26 E-value=0.00096 Score=57.69 Aligned_cols=23 Identities=26% Similarity=0.125 Sum_probs=14.3
Q ss_pred cCCcEEEEccCCChhHHHhHHHH
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPI 167 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpi 167 (574)
+++.+++.|++|+|||.+....+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~ 25 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLA 25 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHH
Confidence 35678999999999998644333
No 198
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.26 E-value=0.0041 Score=71.07 Aligned_cols=125 Identities=24% Similarity=0.219 Sum_probs=75.5
Q ss_pred CCCCCCcHHHHHHHHHHhcCCc-EEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHH
Q 008207 127 KGIESLFPIQAMTFDMVLDGSD-LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (574)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~~~d-vi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~ 205 (574)
.|+ .+++-|.+++..++.+++ +++.|..|+|||.+ +-.+...+.. .+.+++.++||---|..+.+
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~------------~G~~V~~~ApTGkAA~~L~e 408 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA------------AGYEVRGAALSGIAAENLEG 408 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH------------cCCeEEEecCcHHHHHHHhh
Confidence 444 799999999999998655 78999999999986 3344444332 13358999999665544322
Q ss_pred HHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHH
Q 008207 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285 (574)
Q Consensus 206 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~i 285 (574)
..++.. .|-.+|+.-..++...+...++||||||-.+. ...+..+
T Consensus 409 -------~tGi~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~----~~~m~~L 453 (988)
T PRK13889 409 -------GSGIAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG----TRQLERV 453 (988)
T ss_pred -------ccCcch------------------------hhHHHHHhhhcccccccccCcEEEEECcccCC----HHHHHHH
Confidence 122211 11122221112233346677899999999553 3455666
Q ss_pred HHhccCccCceEEEEe
Q 008207 286 LGKVEDANKVQTLLFS 301 (574)
Q Consensus 286 l~~l~~~~~~q~ll~S 301 (574)
+...... ..++|++-
T Consensus 454 L~~a~~~-garvVLVG 468 (988)
T PRK13889 454 LSHAADA-GAKVVLVG 468 (988)
T ss_pred HHhhhhC-CCEEEEEC
Confidence 6554322 45566553
No 199
>PRK04296 thymidine kinase; Provisional
Probab=97.23 E-value=0.0014 Score=60.95 Aligned_cols=110 Identities=18% Similarity=0.159 Sum_probs=58.2
Q ss_pred CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCc---HHHHHHHHHHHHHhhCCCCceEEEEeC
Q 008207 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT---RELAKQVHEDFDVYGGAVGLTSCCLYG 223 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Pt---reLa~Qv~~~~~~~~~~~~~~~~~~~g 223 (574)
.-.++.|++|+|||.+.+-.+......+ .+++|+-|. |....++ ....++..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g-------------~~v~i~k~~~d~~~~~~~i-------~~~lg~~~----- 57 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERG-------------MKVLVFKPAIDDRYGEGKV-------VSRIGLSR----- 57 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcC-------------CeEEEEeccccccccCCcE-------ecCCCCcc-----
Confidence 3468899999999976554444333332 247888663 2221111 11111111
Q ss_pred CcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEecc
Q 008207 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (574)
Q Consensus 224 g~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT 303 (574)
..+.+..+..+++.+.. .-.++++|||||||.+- .+++..++..+.. .-..+++++-
T Consensus 58 --------------~~~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~--~g~~vi~tgl 114 (190)
T PRK04296 58 --------------EAIPVSSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDD--LGIPVICYGL 114 (190)
T ss_pred --------------cceEeCChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHHH--cCCeEEEEec
Confidence 01223445556555544 23467899999998642 2335556665433 2245555554
Q ss_pred C
Q 008207 304 L 304 (574)
Q Consensus 304 ~ 304 (574)
.
T Consensus 115 ~ 115 (190)
T PRK04296 115 D 115 (190)
T ss_pred C
Confidence 3
No 200
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.04 E-value=0.0054 Score=62.54 Aligned_cols=133 Identities=17% Similarity=0.214 Sum_probs=67.0
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCC
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg 224 (574)
.|..+++.||||+|||....--+......... .++.+++ +...-.--.+.++.|+...++.+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~-----------~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~----- 198 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGA-----------SKVALLT-TDSYRIGGHEQLRIFGKILGVPVH----- 198 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-----------CeEEEEe-cccccccHHHHHHHHHHHcCCceE-----
Confidence 36789999999999998755444333322110 1233333 322211223444445444444332
Q ss_pred cchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCC-cHHHHHHHHHhccCccCceEEEEecc
Q 008207 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSAT 303 (574)
Q Consensus 225 ~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~-~~~~~~~il~~l~~~~~~q~ll~SAT 303 (574)
.+.+++.+...+. .+.+.++|+||.+-+.-... ..+.+..+..... +...++++|||
T Consensus 199 ----------------~~~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~--~~~~lLVLsAt 256 (374)
T PRK14722 199 ----------------AVKDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADT--PVQRLLLLNAT 256 (374)
T ss_pred ----------------ecCCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCC--CCeEEEEecCc
Confidence 3334444433333 25567899999987542111 2222332222111 12357788999
Q ss_pred Cchh-HHHHHHHhc
Q 008207 304 LPSW-VKHISTKFL 316 (574)
Q Consensus 304 ~~~~-~~~~~~~~~ 316 (574)
.... +....+.|.
T Consensus 257 s~~~~l~evi~~f~ 270 (374)
T PRK14722 257 SHGDTLNEVVQAYR 270 (374)
T ss_pred cChHHHHHHHHHHH
Confidence 8554 345556554
No 201
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.03 E-value=0.0017 Score=66.82 Aligned_cols=123 Identities=17% Similarity=0.235 Sum_probs=69.5
Q ss_pred CCcHHHHHHHHHH------hcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHH-
Q 008207 131 SLFPIQAMTFDMV------LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV- 203 (574)
Q Consensus 131 ~~~~~Q~~~i~~i------l~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv- 203 (574)
++++-|+.++..+ ..+..+++.|+-|+|||..+ -.+....... +..+++++||---|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~--~~i~~~~~~~-----------~~~~~~~a~tg~AA~~i~ 67 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI--KAIIDYLRSR-----------GKKVLVTAPTGIAAFNIP 67 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH--HHHHHHhccc-----------cceEEEecchHHHHHhcc
Confidence 3667799998888 67889999999999999853 2332222221 22489999996666544
Q ss_pred -HHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHH
Q 008207 204 -HEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282 (574)
Q Consensus 204 -~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~ 282 (574)
-..+..++. .++.. . ..... .+.+.- .....+..+++||+||+-.+ .......+
T Consensus 68 ~G~T~hs~f~-i~~~~------~----------~~~~~---~~~~~~----~~~~~l~~~~~lIiDEism~-~~~~l~~i 122 (364)
T PF05970_consen 68 GGRTIHSFFG-IPINN------N----------EKSQC---KISKNS----RLRERLRKADVLIIDEISMV-SADMLDAI 122 (364)
T ss_pred CCcchHHhcC-ccccc------c----------ccccc---cccccc----hhhhhhhhheeeecccccch-hHHHHHHH
Confidence 122222211 01100 0 00000 111110 11124788999999999955 45555666
Q ss_pred HHHHHhccC
Q 008207 283 ELILGKVED 291 (574)
Q Consensus 283 ~~il~~l~~ 291 (574)
...+..+..
T Consensus 123 ~~~lr~i~~ 131 (364)
T PF05970_consen 123 DRRLRDIRK 131 (364)
T ss_pred HHhhhhhhc
Confidence 666665543
No 202
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.97 E-value=0.014 Score=67.29 Aligned_cols=137 Identities=18% Similarity=0.158 Sum_probs=81.6
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhc-CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEE
Q 008207 115 RISVPLREKLKSKGIESLFPIQAMTFDMVLD-GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193 (574)
Q Consensus 115 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~-~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil 193 (574)
++++..+......+ ..+++-|.+++..+.. ++-+++.|+.|+|||.+. -++...+... +.+++.+
T Consensus 366 ~v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~~------------G~~V~g~ 431 (1102)
T PRK13826 366 GVREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEAA------------GYRVVGG 431 (1102)
T ss_pred CCCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHHc------------CCeEEEE
Confidence 34555555444443 4799999999998864 566889999999999863 3344433321 2358999
Q ss_pred eCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhh
Q 008207 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (574)
Q Consensus 194 ~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~ 273 (574)
+||---|..+.+. .|+...++ .+|+.....+...+..-.+||||||..+
T Consensus 432 ApTgkAA~~L~e~-------~Gi~a~TI------------------------as~ll~~~~~~~~l~~~~vlVIDEAsMv 480 (1102)
T PRK13826 432 ALAGKAAEGLEKE-------AGIQSRTL------------------------SSWELRWNQGRDQLDNKTVFVLDEAGMV 480 (1102)
T ss_pred cCcHHHHHHHHHh-------hCCCeeeH------------------------HHHHhhhccCccCCCCCcEEEEECcccC
Confidence 9996665544332 23332221 1111111112234666789999999955
Q ss_pred hcCCcHHHHHHHHHhccCccCceEEEEe
Q 008207 274 LRMGFVEDVELILGKVEDANKVQTLLFS 301 (574)
Q Consensus 274 l~~~~~~~~~~il~~l~~~~~~q~ll~S 301 (574)
. ..++..++...+.. ..+++++-
T Consensus 481 ~----~~~m~~Ll~~~~~~-garvVLVG 503 (1102)
T PRK13826 481 A----SRQMALFVEAVTRA-GAKLVLVG 503 (1102)
T ss_pred C----HHHHHHHHHHHHhc-CCEEEEEC
Confidence 3 45566677666532 45666653
No 203
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.95 E-value=0.0038 Score=68.72 Aligned_cols=125 Identities=20% Similarity=0.169 Sum_probs=78.8
Q ss_pred CCCCcHHHHHHHHHHhcCCc-EEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHH
Q 008207 129 IESLFPIQAMTFDMVLDGSD-LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (574)
Q Consensus 129 ~~~~~~~Q~~~i~~il~~~d-vi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~ 207 (574)
+..+..-|++|+-.++..+| .++.|-+|||||.+....+--.+..++ ++|+.+-|-.-+..+--.+
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gk-------------kVLLtsyThsAVDNILiKL 733 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGK-------------KVLLTSYTHSAVDNILIKL 733 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCC-------------eEEEEehhhHHHHHHHHHH
Confidence 34678889999988887766 788999999999865444332233222 4899999977777666555
Q ss_pred HHhhCCCCceEEEEeCCcchHHH-----------------HHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCc
Q 008207 208 DVYGGAVGLTSCCLYGGAPYHAQ-----------------EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270 (574)
Q Consensus 208 ~~~~~~~~~~~~~~~gg~~~~~~-----------------~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEa 270 (574)
..++ +...-+-.+.....+ ....-+.+.||.+|=-.+.+.+ +..+.++|.|||||
T Consensus 734 ~~~~----i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl----f~~R~FD~cIiDEA 805 (1100)
T KOG1805|consen 734 KGFG----IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL----FVNRQFDYCIIDEA 805 (1100)
T ss_pred hccC----cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh----hhccccCEEEEccc
Confidence 5433 222211112211111 1223356888888854443322 34566899999999
Q ss_pred hhhh
Q 008207 271 DEML 274 (574)
Q Consensus 271 h~~l 274 (574)
-.++
T Consensus 806 SQI~ 809 (1100)
T KOG1805|consen 806 SQIL 809 (1100)
T ss_pred cccc
Confidence 9875
No 204
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.94 E-value=0.012 Score=51.35 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=15.3
Q ss_pred CCcEEEEccCCChhHHH
Q 008207 146 GSDLVGRARTGQGKTLA 162 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla 162 (574)
++.+++.|++|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999964
No 205
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.94 E-value=0.0033 Score=60.99 Aligned_cols=67 Identities=16% Similarity=0.268 Sum_probs=54.8
Q ss_pred HHHHHHhCCCccEEEEeccccccCCCCCC--------cEEEEeCCCCCHhHHHHHhcccccCCC-cceEEEEECCC
Q 008207 400 VTLAGFRSGKFMTLVATNVAARGLDINDV--------QLIIQCEPPRDVEAYIHRSGRTGRAGN-TGVAVMLYDPR 466 (574)
Q Consensus 400 ~~~~~F~~g~~~vLvaTd~~~~Gldi~~v--------~~VI~~d~p~s~~~yiqr~GR~gR~g~-~G~~i~l~~~~ 466 (574)
...+.|.+|+..|+|.|++++.||.+..- ++-|...+||+....+|..||+.|.|+ ..-.|.++...
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~ 127 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTD 127 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecC
Confidence 55678999999999999999999988642 345678899999999999999999998 44445555444
No 206
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.79 E-value=0.033 Score=57.37 Aligned_cols=132 Identities=18% Similarity=0.208 Sum_probs=69.5
Q ss_pred CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeE-EEEeCc-HHHHHHHHHHHHHhhCCCCceEEEEeC
Q 008207 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSV-LVLLPT-RELAKQVHEDFDVYGGAVGLTSCCLYG 223 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~-Lil~Pt-reLa~Qv~~~~~~~~~~~~~~~~~~~g 223 (574)
.+.+++.||||+|||.+..--+......... .+.++ +|-+-| |.-+.. ++..++...++.+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~---------~g~~V~lit~Dt~R~aa~e---QL~~~a~~lgvpv~~--- 238 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDD---------KSLNIKIITIDNYRIGAKK---QIQTYGDIMGIPVKA--- 238 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhcc---------CCCeEEEEeccCccHHHHH---HHHHHhhcCCcceEe---
Confidence 3568899999999998754333222211100 01123 333333 333332 245555544454322
Q ss_pred CcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCC-cHHHHHHHHHhccCccCceEEEEec
Q 008207 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSA 302 (574)
Q Consensus 224 g~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~-~~~~~~~il~~l~~~~~~q~ll~SA 302 (574)
+.++..+...+.+ +.+.++|++|++.++.... ....+..++..... +.-..+++||
T Consensus 239 ------------------~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~-~~e~~LVlsa 295 (388)
T PRK12723 239 ------------------IESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGR-DAEFHLAVSS 295 (388)
T ss_pred ------------------eCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCC-CCeEEEEEcC
Confidence 2234445444432 4678999999999874211 23344555554432 1235688999
Q ss_pred cCch-hHHHHHHHh
Q 008207 303 TLPS-WVKHISTKF 315 (574)
Q Consensus 303 T~~~-~~~~~~~~~ 315 (574)
|... .+......|
T Consensus 296 t~~~~~~~~~~~~~ 309 (388)
T PRK12723 296 TTKTSDVKEIFHQF 309 (388)
T ss_pred CCCHHHHHHHHHHh
Confidence 9864 445555555
No 207
>PRK14974 cell division protein FtsY; Provisional
Probab=96.76 E-value=0.015 Score=58.61 Aligned_cols=55 Identities=11% Similarity=0.155 Sum_probs=39.1
Q ss_pred CCceEEEecCchhhh-cCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhc
Q 008207 260 SSLKFRVLDEADEML-RMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (574)
Q Consensus 260 ~~~~~lVlDEah~~l-~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~ 316 (574)
.+.++|++|.|.++- +..+..++..+...+.. ...+++++||........++.|.
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~p--d~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKP--DLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCC--ceEEEeeccccchhHHHHHHHHH
Confidence 356799999999874 33456677777666544 45678899998877666666654
No 208
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.76 E-value=0.038 Score=56.30 Aligned_cols=129 Identities=19% Similarity=0.243 Sum_probs=67.4
Q ss_pred CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeE-EEEe-CcH-HHHHHHHHHHHHhhCCCCceEEEEeC
Q 008207 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSV-LVLL-PTR-ELAKQVHEDFDVYGGAVGLTSCCLYG 223 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~-Lil~-Ptr-eLa~Qv~~~~~~~~~~~~~~~~~~~g 223 (574)
+.+.+.||||+|||.....-+......+ .++ +|-+ |.| ..+.|+. .++...++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~G-------------kkVglI~aDt~RiaAvEQLk----~yae~lgipv----- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKK-------------KTVGFITTDHSRIGTVQQLQ----DYVKTIGFEV----- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcC-------------CcEEEEecCCcchHHHHHHH----HHhhhcCCcE-----
Confidence 5688999999999986544443332221 124 3444 333 2333433 3322222222
Q ss_pred CcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcC-CcHHHHHHHHHhccCccCceEEEEec
Q 008207 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM-GFVEDVELILGKVEDANKVQTLLFSA 302 (574)
Q Consensus 224 g~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~-~~~~~~~~il~~l~~~~~~q~ll~SA 302 (574)
+++.+|..+.+.+..-. ...++++|+||-+=+.... .....+..++..... ..-.+.+||
T Consensus 300 ----------------~v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~P--devlLVLsA 360 (436)
T PRK11889 300 ----------------IAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEP--DYICLTLSA 360 (436)
T ss_pred ----------------EecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCC--CeEEEEECC
Confidence 22446777766554311 1125789999988765322 123344444443322 234566899
Q ss_pred cCc-hhHHHHHHHhc
Q 008207 303 TLP-SWVKHISTKFL 316 (574)
Q Consensus 303 T~~-~~~~~~~~~~~ 316 (574)
|.. ..+..+.+.|-
T Consensus 361 Ttk~~d~~~i~~~F~ 375 (436)
T PRK11889 361 SMKSKDMIEIITNFK 375 (436)
T ss_pred ccChHHHHHHHHHhc
Confidence 765 45566666664
No 209
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.74 E-value=0.023 Score=57.36 Aligned_cols=35 Identities=14% Similarity=0.199 Sum_probs=27.5
Q ss_pred CCcHHHHHHHHHHhcCC----cEEEEccCCChhHHHhHH
Q 008207 131 SLFPIQAMTFDMVLDGS----DLVGRARTGQGKTLAFVL 165 (574)
Q Consensus 131 ~~~~~Q~~~i~~il~~~----dvi~~a~TGsGKTla~~l 165 (574)
.++|||...+..+.... -.++.||.|.|||..+..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~ 41 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER 41 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH
Confidence 45899999998877442 488999999999976443
No 210
>PRK08181 transposase; Validated
Probab=96.72 E-value=0.02 Score=55.94 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=18.7
Q ss_pred HHhcCCcEEEEccCCChhHHHhH
Q 008207 142 MVLDGSDLVGRARTGQGKTLAFV 164 (574)
Q Consensus 142 ~il~~~dvi~~a~TGsGKTla~~ 164 (574)
++-.++++++.||+|+|||....
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~ 124 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAA 124 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHH
Confidence 34578899999999999996533
No 211
>PRK06526 transposase; Provisional
Probab=96.70 E-value=0.0081 Score=58.32 Aligned_cols=31 Identities=23% Similarity=0.169 Sum_probs=22.2
Q ss_pred HHHhcCCcEEEEccCCChhHHHhHHHHHHHH
Q 008207 141 DMVLDGSDLVGRARTGQGKTLAFVLPILESL 171 (574)
Q Consensus 141 ~~il~~~dvi~~a~TGsGKTla~~lpil~~l 171 (574)
.++..+.++++.||+|+|||.....-..+..
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHH
Confidence 3455788999999999999976444333333
No 212
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.70 E-value=0.029 Score=57.02 Aligned_cols=132 Identities=18% Similarity=0.216 Sum_probs=71.6
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHH-hCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeC
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESL-TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l-~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~g 223 (574)
.++.+.+.||||-|||.+.+=-+.... ..... --+||.+-|=-.+ -+++++.++.-.++.+.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~-----------kVaiITtDtYRIG--A~EQLk~Ya~im~vp~~---- 264 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKK-----------KVAIITTDTYRIG--AVEQLKTYADIMGVPLE---- 264 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCc-----------ceEEEEeccchhh--HHHHHHHHHHHhCCceE----
Confidence 378899999999999986432222222 12211 1356666553322 23556666665566554
Q ss_pred CcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhh-hcCCcHHHHHHHHHhccCccCceEEEEec
Q 008207 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM-LRMGFVEDVELILGKVEDANKVQTLLFSA 302 (574)
Q Consensus 224 g~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~-l~~~~~~~~~~il~~l~~~~~~q~ll~SA 302 (574)
+|-+|.-|...+. .+.++++|.||=+-+= .|.....++..++..... ---.+.+||
T Consensus 265 -----------------vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~--i~~~Lvlsa 321 (407)
T COG1419 265 -----------------VVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHS--IEVYLVLSA 321 (407)
T ss_pred -----------------EecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhcccc--ceEEEEEec
Confidence 4444555544443 3555667777755431 111234455555555532 234567888
Q ss_pred cCc-hhHHHHHHHhc
Q 008207 303 TLP-SWVKHISTKFL 316 (574)
Q Consensus 303 T~~-~~~~~~~~~~~ 316 (574)
|.- .++..+...|-
T Consensus 322 t~K~~dlkei~~~f~ 336 (407)
T COG1419 322 TTKYEDLKEIIKQFS 336 (407)
T ss_pred CcchHHHHHHHHHhc
Confidence 875 34555666554
No 213
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.70 E-value=0.0065 Score=68.79 Aligned_cols=154 Identities=14% Similarity=0.080 Sum_probs=92.4
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCC---c--ccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEE
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA---S--KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC 219 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~---~--~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~ 219 (574)
.|+++++.-..|.|||.+-+.-.+..+....... . .+.......-.|||||. .+..||.+++....... +++.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEE
Confidence 4678899999999999976555443322111000 0 00000112237999999 88899999998776543 6766
Q ss_pred EEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCC--------------ccCCC------ceEEEecCchhhhcCCcH
Q 008207 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN--------------IDLSS------LKFRVLDEADEMLRMGFV 279 (574)
Q Consensus 220 ~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~--------------~~l~~------~~~lVlDEah~~l~~~~~ 279 (574)
.+.|=.....-...-.-.+|||++|+..|...+.... .+..+ +=-|+||||..+ .. -.
T Consensus 451 ~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMv-es-ss 528 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMV-ES-SS 528 (1394)
T ss_pred EEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhh-cc-hH
Confidence 6665322111111112349999999999987764321 11111 122799999955 44 35
Q ss_pred HHHHHHHHhccCccCceEEEEeccCc
Q 008207 280 EDVELILGKVEDANKVQTLLFSATLP 305 (574)
Q Consensus 280 ~~~~~il~~l~~~~~~q~ll~SAT~~ 305 (574)
......+..++. ......|+|.-
T Consensus 529 S~~a~M~~rL~~---in~W~VTGTPi 551 (1394)
T KOG0298|consen 529 SAAAEMVRRLHA---INRWCVTGTPI 551 (1394)
T ss_pred HHHHHHHHHhhh---hceeeecCCch
Confidence 556666666664 56889999943
No 214
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.52 E-value=0.027 Score=54.20 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=25.6
Q ss_pred CCCceEEEecCchhhhcCCcHH-HHHHHHHhccCccCceEEEEeccCc
Q 008207 259 LSSLKFRVLDEADEMLRMGFVE-DVELILGKVEDANKVQTLLFSATLP 305 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~-~~~~il~~l~~~~~~q~ll~SAT~~ 305 (574)
+.++++|||||++......+.. .+..|+..... ....+++.|---+
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~-~~~~tiitSNl~~ 206 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSS-SKRPTGMLTNSNM 206 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHh-CCCCEEEeCCCCH
Confidence 5578899999999865333332 34445554321 1345665554433
No 215
>PHA02533 17 large terminase protein; Provisional
Probab=96.50 E-value=0.022 Score=61.30 Aligned_cols=150 Identities=12% Similarity=0.065 Sum_probs=85.4
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHh
Q 008207 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (574)
Q Consensus 131 ~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (574)
.|.|+|...+..+..++-.++..+=..|||.+.+..++......+ +..+++++|++.-|..+.+.++..
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~-----------~~~v~i~A~~~~QA~~vF~~ik~~ 127 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNK-----------DKNVGILAHKASMAAEVLDRTKQA 127 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCC-----------CCEEEEEeCCHHHHHHHHHHHHHH
Confidence 678999999988766666677778888999977654544333221 236999999999999988887654
Q ss_pred hCCCC--ceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHh
Q 008207 211 GGAVG--LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (574)
Q Consensus 211 ~~~~~--~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~ 288 (574)
....+ +....... ......+.++..|.+.|.+. +...=.++.++|+||+|.+.+ +.+.+..+...
T Consensus 128 ie~~P~l~~~~i~~~----~~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~ 194 (534)
T PHA02533 128 IELLPDFLQPGIVEW----NKGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPV 194 (534)
T ss_pred HHhCHHHhhcceeec----CccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC--HHHHHHHHHHH
Confidence 33211 01000000 01111224555665544321 111223467899999997643 23334444444
Q ss_pred ccCccCceEEEEeccC
Q 008207 289 VEDANKVQTLLFSATL 304 (574)
Q Consensus 289 l~~~~~~q~ll~SAT~ 304 (574)
+......+++++|..-
T Consensus 195 lasg~~~r~iiiSTp~ 210 (534)
T PHA02533 195 ISSGRSSKIIITSTPN 210 (534)
T ss_pred HHcCCCceEEEEECCC
Confidence 4432223555655553
No 216
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.46 E-value=0.015 Score=57.58 Aligned_cols=142 Identities=20% Similarity=0.270 Sum_probs=81.0
Q ss_pred CCCCCCcHHHHHHHHHHhcCC--cEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHH
Q 008207 127 KGIESLFPIQAMTFDMVLDGS--DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (574)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~~~--dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (574)
.|+....-.|.-++..++.-. =|.+.|+.|||||+.++.+.++.....+. .-+++|.=|+..+...+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~----------y~KiiVtRp~vpvG~dI- 292 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR----------YRKIIVTRPTVPVGEDI- 292 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh----------hceEEEecCCcCccccc-
Confidence 477777788999999988543 37788999999999777777766554322 22477777775544221
Q ss_pred HHHHHhhCCCCceEEEEeCCcc--hHHHHHHhcCC----CcEEEEChHHHHHhHhcCCccCCC----------ceEEEec
Q 008207 205 EDFDVYGGAVGLTSCCLYGGAP--YHAQEFKLKKG----IDVVIGTPGRIKDHIERGNIDLSS----------LKFRVLD 268 (574)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~gg~~--~~~~~~~l~~~----~~IlV~Tp~~l~~~l~~~~~~l~~----------~~~lVlD 268 (574)
+.+-|... ...|...+... ...-=++.+.+-..+.++.+.+.. =.++|+|
T Consensus 293 --------------GfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIID 358 (436)
T COG1875 293 --------------GFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIID 358 (436)
T ss_pred --------------CcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEe
Confidence 11111100 00011000000 111112244555555554443222 2589999
Q ss_pred CchhhhcCCcHHHHHHHHHhccCccCceEEE
Q 008207 269 EADEMLRMGFVEDVELILGKVEDANKVQTLL 299 (574)
Q Consensus 269 Eah~~l~~~~~~~~~~il~~l~~~~~~q~ll 299 (574)
||..+- ..++..|+..+-. ..++++
T Consensus 359 EaQNLT----pheikTiltR~G~--GsKIVl 383 (436)
T COG1875 359 EAQNLT----PHELKTILTRAGE--GSKIVL 383 (436)
T ss_pred hhhccC----HHHHHHHHHhccC--CCEEEE
Confidence 999775 6778899988876 445544
No 217
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.46 E-value=0.0067 Score=52.54 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=15.6
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
+..+++.||+|+|||...
T Consensus 2 ~~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA 19 (148)
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 567999999999999864
No 218
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=96.39 E-value=0.00014 Score=78.45 Aligned_cols=74 Identities=23% Similarity=0.427 Sum_probs=58.2
Q ss_pred hhhhhhHHHH-hhcCCCeEEEEecChHHHHHHHHhCC---CCccccccCCHHHHHHHHHHHhC---CCccEEEEeccccc
Q 008207 349 RSQVIPDIIR-CYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRS---GKFMTLVATNVAAR 421 (574)
Q Consensus 349 ~~~~l~~ll~-~~~~~~~~lVF~~t~~~~~~l~~~l~---~~~~lh~~~~~~~r~~~~~~F~~---g~~~vLvaTd~~~~ 421 (574)
+..+|..+++ ....+.+++||.......+-|.+++. ....+.|......|+..+.+|.. .++..|++|.+.+-
T Consensus 616 k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~ 695 (696)
T KOG0383|consen 616 KLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEGKYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGL 695 (696)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccCcceeccCCccchhhhhhccccCCCCccceEEEeecccccC
Confidence 3344444444 33577899999999999999998887 56678999999999999999983 57788999987655
Q ss_pred c
Q 008207 422 G 422 (574)
Q Consensus 422 G 422 (574)
|
T Consensus 696 g 696 (696)
T KOG0383|consen 696 G 696 (696)
T ss_pred C
Confidence 4
No 219
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.37 E-value=0.009 Score=57.82 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=28.1
Q ss_pred ccCCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccC
Q 008207 257 IDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304 (574)
Q Consensus 257 ~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~ 304 (574)
.....++++|+||||.|.... +..+...+...+. ...+++.+-.+
T Consensus 125 ~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~--~trFiLIcnyl 169 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDA-QAALRRTMEDFSR--TTRFILICNYL 169 (346)
T ss_pred CCCCcceEEEEechhhhhHHH-HHHHHHHHhcccc--ceEEEEEcCCh
Confidence 356678999999999986332 4445555554333 45566655544
No 220
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.34 E-value=0.18 Score=62.64 Aligned_cols=210 Identities=11% Similarity=0.128 Sum_probs=112.7
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHH
Q 008207 131 SLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (574)
Q Consensus 131 ~~~~~Q~~~i~~il~~--~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~ 208 (574)
.+++-|.+++..++.. +-.++.|+.|+|||.+ +-.++..+.. .+.++++++||-.-+.++.+...
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~------------~G~~V~~lAPTgrAA~~L~e~~g 495 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASE------------QGYEIQIITAGSLSAQELRQKIP 495 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHh------------cCCeEEEEeCCHHHHHHHHHHhc
Confidence 6889999999998875 5689999999999975 3333333332 12359999999877766655432
Q ss_pred HhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHh
Q 008207 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (574)
Q Consensus 209 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~ 288 (574)
..+ .........+... .-..|..+|+ +....+..-++||||||-.+. ..++..++..
T Consensus 496 ~~A-------------~Ti~~~l~~l~~~--~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~ 552 (1960)
T TIGR02760 496 RLA-------------STFITWVKNLFND--DQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDK 552 (1960)
T ss_pred chh-------------hhHHHHHHhhccc--ccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHH
Confidence 111 0111111111111 1122222332 222345677899999999654 4567777766
Q ss_pred ccCccCceEEEEecc--Cch----hHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhhh-hhhhHHHHhhc
Q 008207 289 VEDANKVQTLLFSAT--LPS----WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS-QVIPDIIRCYS 361 (574)
Q Consensus 289 l~~~~~~q~ll~SAT--~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~l~~ll~~~~ 361 (574)
.... ..++|++-=+ +|. .+..+... .....+.+.... .....+ .+.......+. .+...++....
T Consensus 553 a~~~-garvVlvGD~~QL~sV~aG~~f~~L~~---~gv~t~~l~~i~--rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~ 624 (1960)
T TIGR02760 553 AEQH-NSKLILLNDSAQRQGMSAGSAIDLLKE---GGVTTYAWVDTK--QQKASV--EISEAVDKLRVDYIASAWLDLTP 624 (1960)
T ss_pred Hhhc-CCEEEEEcChhhcCccccchHHHHHHH---CCCcEEEeeccc--ccCcce--eeeccCchHHHHHHHHHHHhccc
Confidence 6432 4677766433 222 22233222 122233332211 111111 12222222222 23344444333
Q ss_pred CCCeEEEEecChHHHHHHHHhCC
Q 008207 362 SGGRTIIFTETKESASQLADLLP 384 (574)
Q Consensus 362 ~~~~~lVF~~t~~~~~~l~~~l~ 384 (574)
....++|+..+..+...|....+
T Consensus 625 ~r~~tliv~~t~~dr~~Ln~~iR 647 (1960)
T TIGR02760 625 DRQNSQVLATTHREQQDLTQIIR 647 (1960)
T ss_pred ccCceEEEcCCcHHHHHHHHHHH
Confidence 44468999999999888887765
No 221
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.32 E-value=0.014 Score=65.91 Aligned_cols=71 Identities=18% Similarity=0.133 Sum_probs=54.1
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHH
Q 008207 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (574)
..++|-|.+++.+ ....++|.|..|||||.+...-+...+..... ..-++|+|+.|+..|..+.+.+..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v---------~p~~IL~lTFTnkAA~em~~Rl~~ 71 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENA---------SPHSIMAVTFTNKAAAEMRHRIGA 71 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCC---------CHHHeEeeeccHHHHHHHHHHHHH
Confidence 4689999999865 35689999999999999866555555543211 123599999999999999998876
Q ss_pred hh
Q 008207 210 YG 211 (574)
Q Consensus 210 ~~ 211 (574)
+.
T Consensus 72 ~~ 73 (715)
T TIGR01075 72 LL 73 (715)
T ss_pred Hh
Confidence 64
No 222
>PRK05642 DNA replication initiation factor; Validated
Probab=96.29 E-value=0.013 Score=56.35 Aligned_cols=46 Identities=20% Similarity=0.336 Sum_probs=29.0
Q ss_pred CCCceEEEecCchhhhcC-CcHHHHHHHHHhccCccCceEEEEeccCch
Q 008207 259 LSSLKFRVLDEADEMLRM-GFVEDVELILGKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~-~~~~~~~~il~~l~~~~~~q~ll~SAT~~~ 306 (574)
+.++++||+|++|.+... .+...+-.++..+... ...++++++.++
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~--g~~ilits~~~p 141 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDS--GRRLLLAASKSP 141 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhc--CCEEEEeCCCCH
Confidence 345678999999977432 2345566777666542 245677777654
No 223
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.26 E-value=0.012 Score=54.78 Aligned_cols=55 Identities=16% Similarity=0.206 Sum_probs=33.5
Q ss_pred CCceEEEecCchhhh-cCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhc
Q 008207 260 SSLKFRVLDEADEML-RMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (574)
Q Consensus 260 ~~~~~lVlDEah~~l-~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~ 316 (574)
+++++|++|=+-+.. +.....++..++..+.. ..-.+++|||...........+.
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~--~~~~LVlsa~~~~~~~~~~~~~~ 137 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNP--DEVHLVLSATMGQEDLEQALAFY 137 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSS--SEEEEEEEGGGGGHHHHHHHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCC--ccceEEEecccChHHHHHHHHHh
Confidence 456788888776532 12235566677766643 45677899998776544444443
No 224
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.25 E-value=0.031 Score=51.49 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=33.9
Q ss_pred EEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhh
Q 008207 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (574)
Q Consensus 149 vi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~ 211 (574)
+++.|++|+|||...+-.+...+..+. .+++++. .+...++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~-------------~v~~~s~-e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGE-------------PGLYVTL-EESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCC-------------cEEEEEC-CCCHHHHHHHHHHcC
Confidence 689999999999866555555554432 3777764 466777777776653
No 225
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=96.23 E-value=0.0035 Score=73.60 Aligned_cols=90 Identities=24% Similarity=0.416 Sum_probs=74.1
Q ss_pred eEEEEecChHHHHHHHHhCC-----CCccccccCC-----------HHHHHHHHHHHhCCCccEEEEeccccccCCCCCC
Q 008207 365 RTIIFTETKESASQLADLLP-----GARALHGDIQ-----------QSQREVTLAGFRSGKFMTLVATNVAARGLDINDV 428 (574)
Q Consensus 365 ~~lVF~~t~~~~~~l~~~l~-----~~~~lh~~~~-----------~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v 428 (574)
..++|++....+..+...+. .+..+.|.+. ...+..++..|....+++|++|.++..|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 46899999988888877775 2223333322 2336788999999999999999999999999999
Q ss_pred cEEEEeCCCCCHhHHHHHhcccccCC
Q 008207 429 QLIIQCEPPRDVEAYIHRSGRTGRAG 454 (574)
Q Consensus 429 ~~VI~~d~p~s~~~yiqr~GR~gR~g 454 (574)
+.|+.++.|.....|+|+.||+-+++
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999996654
No 226
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.13 E-value=0.036 Score=52.87 Aligned_cols=21 Identities=19% Similarity=0.147 Sum_probs=17.0
Q ss_pred cCCcEEEEccCCChhHHHhHH
Q 008207 145 DGSDLVGRARTGQGKTLAFVL 165 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~l 165 (574)
.+..+++.|++|+|||.....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 456899999999999976443
No 227
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.12 E-value=0.15 Score=53.53 Aligned_cols=130 Identities=22% Similarity=0.254 Sum_probs=66.6
Q ss_pred CCcEEEEccCCChhHHHhHHHHHHHH-hCCCCCCcccCCCCCCCeEEEE-eCc-HHHHHHHHHHHHHhhCCCCceEEEEe
Q 008207 146 GSDLVGRARTGQGKTLAFVLPILESL-TNGPTKASKKTGYGRAPSVLVL-LPT-RELAKQVHEDFDVYGGAVGLTSCCLY 222 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~lpil~~l-~~~~~~~~~~~~~~~~~~~Lil-~Pt-reLa~Qv~~~~~~~~~~~~~~~~~~~ 222 (574)
++.+++.||||+|||.+..--+.... .... .++.++ +-+ |.-+ .+.+..++...++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g------------~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~---- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGK------------KKVALITLDTYRIGA---VEQLKTYAKIMGIPV---- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC------------CeEEEEECCccHHHH---HHHHHHHHHHhCCce----
Confidence 56789999999999986543333322 2221 124433 322 3222 233444443333322
Q ss_pred CCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhh-cCCcHHHHHHHHHhccCccCceEEEEe
Q 008207 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML-RMGFVEDVELILGKVEDANKVQTLLFS 301 (574)
Q Consensus 223 gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l-~~~~~~~~~~il~~l~~~~~~q~ll~S 301 (574)
..+.++..+...+.+ +.++++|+||-+-+.- +......+..++..... +....+++|
T Consensus 282 -----------------~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~-~~~~~LVl~ 339 (424)
T PRK05703 282 -----------------EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGE-PIDVYLVLS 339 (424)
T ss_pred -----------------EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCC-CCeEEEEEE
Confidence 223445555555542 3467899999886532 11123445555552211 134577899
Q ss_pred ccCch-hHHHHHHHhc
Q 008207 302 ATLPS-WVKHISTKFL 316 (574)
Q Consensus 302 AT~~~-~~~~~~~~~~ 316 (574)
||... .+..+...|-
T Consensus 340 a~~~~~~l~~~~~~f~ 355 (424)
T PRK05703 340 ATTKYEDLKDIYKHFS 355 (424)
T ss_pred CCCCHHHHHHHHHHhC
Confidence 98764 4555555553
No 228
>PRK06893 DNA replication initiation factor; Validated
Probab=96.11 E-value=0.032 Score=53.47 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=29.2
Q ss_pred CCCceEEEecCchhhhcCC-cHHHHHHHHHhccCccCceEEEEeccCch
Q 008207 259 LSSLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~-~~~~~~~il~~l~~~~~~q~ll~SAT~~~ 306 (574)
+.+.++|||||+|.+.... +...+..++..+... ..+++++|++.++
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~-~~~illits~~~p 136 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQ-GKTLLLISADCSP 136 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHc-CCcEEEEeCCCCh
Confidence 3467899999999875322 333455555555432 3456778888654
No 229
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.10 E-value=0.024 Score=63.54 Aligned_cols=69 Identities=20% Similarity=0.133 Sum_probs=52.7
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhh
Q 008207 132 LFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (574)
Q Consensus 132 ~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~ 211 (574)
++|-|.+++.. ...+++|.|..|||||.+.+--+...+..... ...++|+|+.|+..|.++.+.+....
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~---------~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGY---------KARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC---------CHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 68889998865 35689999999999999876666665543211 12359999999999999998886543
No 230
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.10 E-value=0.023 Score=49.82 Aligned_cols=78 Identities=21% Similarity=0.187 Sum_probs=54.5
Q ss_pred ccccCCHHHHHHHHHHHhCCC-ccEEEEeccccccCCCCC--CcEEEEeCCCCC--------------------------
Q 008207 389 LHGDIQQSQREVTLAGFRSGK-FMTLVATNVAARGLDIND--VQLIIQCEPPRD-------------------------- 439 (574)
Q Consensus 389 lh~~~~~~~r~~~~~~F~~g~-~~vLvaTd~~~~Gldi~~--v~~VI~~d~p~s-------------------------- 439 (574)
+.-+....+...+++.|+... ..||++|.-++.|||+++ ++.||...+|..
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~ 106 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFV 106 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHH
Confidence 333455556788899998754 379999988999999997 467888887731
Q ss_pred -----HhHHHHHhcccccCCCcceEEEEECCC
Q 008207 440 -----VEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 440 -----~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
.....|.+||.-|....--++.+++++
T Consensus 107 ~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D~R 138 (141)
T smart00492 107 SLPDAMRTLAQCVGRLIRGANDYGVVVIADKR 138 (141)
T ss_pred HHHHHHHHHHHHhCccccCcCceEEEEEEecc
Confidence 123357889999876543455555543
No 231
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.09 E-value=0.021 Score=59.30 Aligned_cols=33 Identities=12% Similarity=0.071 Sum_probs=26.3
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCCChhHHHhH
Q 008207 132 LFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164 (574)
Q Consensus 132 ~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~ 164 (574)
+-......+..+..++++++.|++|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 444556667777889999999999999997653
No 232
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.08 E-value=0.018 Score=64.92 Aligned_cols=71 Identities=18% Similarity=0.116 Sum_probs=53.6
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHH
Q 008207 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (574)
..++|-|.+++.+. ...++|.|..|||||.+...-+...+..... ..-++|+|+-|+..|..+.+.+..
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v---------~p~~IL~lTFT~kAA~Em~~Rl~~ 76 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENA---------SPYSIMAVTFTNKAAAEMRHRIEQ 76 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCC---------ChhHeEeeeccHHHHHHHHHHHHH
Confidence 35899999998753 4689999999999998865555544432211 122599999999999999998876
Q ss_pred hh
Q 008207 210 YG 211 (574)
Q Consensus 210 ~~ 211 (574)
+.
T Consensus 77 ~~ 78 (721)
T PRK11773 77 LL 78 (721)
T ss_pred Hh
Confidence 54
No 233
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.06 E-value=0.058 Score=48.12 Aligned_cols=20 Identities=30% Similarity=0.262 Sum_probs=15.2
Q ss_pred EEEEccCCChhHHHhHHHHH
Q 008207 149 LVGRARTGQGKTLAFVLPIL 168 (574)
Q Consensus 149 vi~~a~TGsGKTla~~lpil 168 (574)
+++.|++|+|||......+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~ 21 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLAL 21 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHH
Confidence 67899999999986544433
No 234
>PRK06921 hypothetical protein; Provisional
Probab=96.03 E-value=0.13 Score=50.46 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=19.3
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~ 172 (574)
.+..+++.|++|+|||... ..+...+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~ 142 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELM 142 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHh
Confidence 3677999999999999753 33444443
No 235
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.01 E-value=0.026 Score=54.63 Aligned_cols=27 Identities=15% Similarity=0.375 Sum_probs=21.8
Q ss_pred EEEEccCCChhHHHhHHHHHHHHhCCCC
Q 008207 149 LVGRARTGQGKTLAFVLPILESLTNGPT 176 (574)
Q Consensus 149 vi~~a~TGsGKTla~~lpil~~l~~~~~ 176 (574)
++|.||||||||.+ +..++.++.....
T Consensus 128 ILVTGpTGSGKSTT-lAamId~iN~~~~ 154 (353)
T COG2805 128 ILVTGPTGSGKSTT-LAAMIDYINKHKA 154 (353)
T ss_pred EEEeCCCCCcHHHH-HHHHHHHHhccCC
Confidence 88999999999987 5667788876543
No 236
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.00 E-value=0.061 Score=55.60 Aligned_cols=47 Identities=17% Similarity=0.216 Sum_probs=32.5
Q ss_pred CCCCcHHHHHHHHH----HhcCCcEEEEccCCChhHHHhHHHHHHHHhCCC
Q 008207 129 IESLFPIQAMTFDM----VLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175 (574)
Q Consensus 129 ~~~~~~~Q~~~i~~----il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~ 175 (574)
|...+|-|.+-+-. +-.+.+.++-.|+|+|||.+.+--++......+
T Consensus 14 Y~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p 64 (755)
T KOG1131|consen 14 YDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYP 64 (755)
T ss_pred CcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCC
Confidence 45566777654433 336778999999999999986666665555443
No 237
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.99 E-value=0.0032 Score=57.02 Aligned_cols=124 Identities=19% Similarity=0.161 Sum_probs=56.0
Q ss_pred EEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHH
Q 008207 150 VGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229 (574)
Q Consensus 150 i~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~ 229 (574)
++.|+-|-|||.+..+.+...+..+. .+++|.+|+.+-+..+.+.+..-....+++........ .
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~------------~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~---~ 65 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGK------------IRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIG---Q 65 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----------------EEEE-SS--S-HHHHHCC----------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcC------------ceEEEecCCHHHHHHHHHHHHhhccccccccccccccc---c
Confidence 57899999999987776654443322 35999999999888877766543333333220000000 0
Q ss_pred HHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCc
Q 008207 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (574)
Q Consensus 230 ~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~ 305 (574)
.......+..|-+..|..+... ....++||||||=.+- ...+..++.. ...++||.|..
T Consensus 66 ~~~~~~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~ll~~------~~~vv~stTi~ 124 (177)
T PF05127_consen 66 IIKLRFNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAIP----LPLLKQLLRR------FPRVVFSTTIH 124 (177)
T ss_dssp -------CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCC------SSEEEEEEEBS
T ss_pred ccccccccceEEEECCHHHHhC-------cCCCCEEEEechhcCC----HHHHHHHHhh------CCEEEEEeecc
Confidence 0001112466777777777432 2235899999999764 4444555422 24578888864
No 238
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.95 E-value=0.039 Score=61.34 Aligned_cols=72 Identities=25% Similarity=0.207 Sum_probs=52.7
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHH
Q 008207 129 IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (574)
Q Consensus 129 ~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~ 208 (574)
-..+++-|.+++-. ...+++|.|..|||||.+..--+...+.... ..+-++|+++.|+..|..+.+.+.
T Consensus 194 ~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~---------~~~~~IL~ltft~~AA~em~eRL~ 262 (684)
T PRK11054 194 SSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQ---------AQPEQILLLAFGRQAAEEMDERIR 262 (684)
T ss_pred CCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCC---------CCHHHeEEEeccHHHHHHHHHHHH
Confidence 35799999999864 3457899999999999875554444443321 122369999999999999998886
Q ss_pred Hhh
Q 008207 209 VYG 211 (574)
Q Consensus 209 ~~~ 211 (574)
...
T Consensus 263 ~~l 265 (684)
T PRK11054 263 ERL 265 (684)
T ss_pred Hhc
Confidence 543
No 239
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.95 E-value=0.39 Score=51.15 Aligned_cols=21 Identities=29% Similarity=0.310 Sum_probs=17.1
Q ss_pred cCCcEEEEccCCChhHHHhHH
Q 008207 145 DGSDLVGRARTGQGKTLAFVL 165 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~l 165 (574)
.|+.+.+.|+||+|||.....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaak 369 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAK 369 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 567888999999999986533
No 240
>PRK08727 hypothetical protein; Validated
Probab=95.94 E-value=0.038 Score=53.08 Aligned_cols=16 Identities=31% Similarity=0.202 Sum_probs=13.8
Q ss_pred CcEEEEccCCChhHHH
Q 008207 147 SDLVGRARTGQGKTLA 162 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla 162 (574)
..+++.|++|+|||..
T Consensus 42 ~~l~l~G~~G~GKThL 57 (233)
T PRK08727 42 DWLYLSGPAGTGKTHL 57 (233)
T ss_pred CeEEEECCCCCCHHHH
Confidence 3499999999999964
No 241
>PRK12377 putative replication protein; Provisional
Probab=95.94 E-value=0.11 Score=50.28 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=29.1
Q ss_pred CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHH
Q 008207 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~ 207 (574)
...+++.|++|+|||... ..+.+.+..... .+ +.++..+|..++...+
T Consensus 101 ~~~l~l~G~~GtGKThLa-~AIa~~l~~~g~------------~v-~~i~~~~l~~~l~~~~ 148 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLA-AAIGNRLLAKGR------------SV-IVVTVPDVMSRLHESY 148 (248)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHHcCC------------Ce-EEEEHHHHHHHHHHHH
Confidence 467999999999999753 333444443211 24 4445567777665443
No 242
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.90 E-value=0.1 Score=52.89 Aligned_cols=44 Identities=16% Similarity=0.183 Sum_probs=28.9
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCch
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~ 306 (574)
....+++|||+||+|- ......+++.+..+++.-++++.++-+.
T Consensus 130 ~~~~kV~iI~~ae~m~----~~AaNaLLKtLEEPp~~t~fiL~t~~~~ 173 (342)
T PRK06964 130 RGGARVVVLYPAEALN----VAAANALLKTLEEPPPGTVFLLVSARID 173 (342)
T ss_pred cCCceEEEEechhhcC----HHHHHHHHHHhcCCCcCcEEEEEECChh
Confidence 4568999999999985 4445666666655544445555555443
No 243
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.89 E-value=0.044 Score=54.02 Aligned_cols=29 Identities=28% Similarity=0.261 Sum_probs=21.4
Q ss_pred HhcCCcEEEEccCCChhHHHhHHHHHHHH
Q 008207 143 VLDGSDLVGRARTGQGKTLAFVLPILESL 171 (574)
Q Consensus 143 il~~~dvi~~a~TGsGKTla~~lpil~~l 171 (574)
+..|.-+++.|++|+|||...+..+.+.+
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~ 55 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLI 55 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45678899999999999975554444443
No 244
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.88 E-value=0.022 Score=63.61 Aligned_cols=70 Identities=19% Similarity=0.118 Sum_probs=53.1
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHh
Q 008207 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (574)
Q Consensus 131 ~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (574)
.+++-|.+++.+ ....++|.|..|||||.+...-+...+..... ..-++|+|+.|+..|..+.+.+..+
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v---------~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY---------QARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC---------CHHHeeeEechHHHHHHHHHHHHHH
Confidence 478999999875 35678999999999999866666655543211 1225999999999999999888765
Q ss_pred h
Q 008207 211 G 211 (574)
Q Consensus 211 ~ 211 (574)
.
T Consensus 71 l 71 (672)
T PRK10919 71 L 71 (672)
T ss_pred h
Confidence 3
No 245
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.87 E-value=0.17 Score=53.79 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=27.5
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCch
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~ 306 (574)
....+++||||+|.|.. .....+++.+..+++.-+++|.+|-+.
T Consensus 114 ~~~~KVvIIDEah~Ls~----~A~NaLLK~LEePp~~v~fIlatte~~ 157 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSN----SAFNALLKTLEEPAPHVKFILATTEVK 157 (491)
T ss_pred cCCceEEEEeChHhCCH----HHHHHHHHHHhCCCCCeEEEEEeCChH
Confidence 45789999999998753 344556666655443334555555433
No 246
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.87 E-value=0.24 Score=48.43 Aligned_cols=131 Identities=18% Similarity=0.215 Sum_probs=69.3
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeE-EEEeCc-H-HHHHHHHHHHHHhhCCCCceEEEE
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSV-LVLLPT-R-ELAKQVHEDFDVYGGAVGLTSCCL 221 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~-Lil~Pt-r-eLa~Qv~~~~~~~~~~~~~~~~~~ 221 (574)
.+..+.+.+++|+|||..+..-+......+ .++ +|-+-+ | ..+.|+..... ..++.+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~-------------~~v~~i~~D~~ri~~~~ql~~~~~----~~~~~~~-- 134 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK-------------KTVGFITTDHSRIGTVQQLQDYVK----TIGFEVI-- 134 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcC-------------CeEEEEecCCCCHHHHHHHHHHhh----hcCceEE--
Confidence 456789999999999987654443322211 123 333322 2 44555543332 2223221
Q ss_pred eCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhc-CCcHHHHHHHHHhccCccCceEEEE
Q 008207 222 YGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLF 300 (574)
Q Consensus 222 ~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~-~~~~~~~~~il~~l~~~~~~q~ll~ 300 (574)
...+|..+.+.+..- -...+++++|+|-+=++-. ......+..++..... ..-.+++
T Consensus 135 -------------------~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~--~~~~LVl 192 (270)
T PRK06731 135 -------------------AVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEP--DYICLTL 192 (270)
T ss_pred -------------------ecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCC--CeEEEEE
Confidence 123455555544321 0124578999998876531 1223444455444332 2346679
Q ss_pred eccCc-hhHHHHHHHhc
Q 008207 301 SATLP-SWVKHISTKFL 316 (574)
Q Consensus 301 SAT~~-~~~~~~~~~~~ 316 (574)
|||.. ......++.|-
T Consensus 193 ~a~~~~~d~~~~~~~f~ 209 (270)
T PRK06731 193 SASMKSKDMIEIITNFK 209 (270)
T ss_pred cCccCHHHHHHHHHHhC
Confidence 99864 56667777764
No 247
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.85 E-value=0.036 Score=59.39 Aligned_cols=148 Identities=14% Similarity=0.107 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhc-----C----CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHH
Q 008207 134 PIQAMTFDMVLD-----G----SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (574)
Q Consensus 134 ~~Q~~~i~~il~-----~----~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (574)
|||.-.+..++. | +.+++.-+=|.|||......++..+.-.. ..+..+++++++++-|..++
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g---------~~~~~i~~~A~~~~QA~~~f 71 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDG---------EPGAEIYCAANTRDQAKIVF 71 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCC---------ccCceEEEEeCCHHHHHHHH
Confidence 688877777662 2 35888889999999855444444443221 23567999999999999999
Q ss_pred HHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhc--CCccCCCceEEEecCchhhhcCCcHHHH
Q 008207 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER--GNIDLSSLKFRVLDEADEMLRMGFVEDV 282 (574)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~--~~~~l~~~~~lVlDEah~~l~~~~~~~~ 282 (574)
+.+............ ..+ . .... ...-.|.....+.++..+.+ +..+=.+..++|+||+|.+-+....+.+
T Consensus 72 ~~~~~~i~~~~~l~~-~~~-~----~~~~-~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l 144 (477)
T PF03354_consen 72 DEAKKMIEASPELRK-RKK-P----KIIK-SNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDAL 144 (477)
T ss_pred HHHHHHHHhChhhcc-chh-h----hhhh-hhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHH
Confidence 988766543211100 000 0 0000 01123443333333333332 2223345789999999988654444444
Q ss_pred HHHHHhccCccCceEEEE
Q 008207 283 ELILGKVEDANKVQTLLF 300 (574)
Q Consensus 283 ~~il~~l~~~~~~q~ll~ 300 (574)
..-....+ +.+++..
T Consensus 145 ~~g~~~r~---~pl~~~I 159 (477)
T PF03354_consen 145 ESGMGARP---NPLIIII 159 (477)
T ss_pred HhhhccCC---CceEEEE
Confidence 44443332 4455544
No 248
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.85 E-value=0.15 Score=51.18 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=28.2
Q ss_pred CCCCcHHHHHHHHHHh----cCC---cEEEEccCCChhHHHhHH
Q 008207 129 IESLFPIQAMTFDMVL----DGS---DLVGRARTGQGKTLAFVL 165 (574)
Q Consensus 129 ~~~~~~~Q~~~i~~il----~~~---dvi~~a~TGsGKTla~~l 165 (574)
+..++|||..++..+. .|+ -+++.||.|+||+..+..
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~ 45 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA 45 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH
Confidence 4568899999887765 333 489999999999975433
No 249
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.82 E-value=0.15 Score=51.20 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=28.7
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCch
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~ 306 (574)
-...+++|||+||.|. ......+++.+..++..-++++.++-+.
T Consensus 105 ~g~~KV~iI~~a~~m~----~~AaNaLLKtLEEPp~~~~fiL~t~~~~ 148 (325)
T PRK06871 105 QGGNKVVYIQGAERLT----EAAANALLKTLEEPRPNTYFLLQADLSA 148 (325)
T ss_pred cCCceEEEEechhhhC----HHHHHHHHHHhcCCCCCeEEEEEECChH
Confidence 3467999999999985 3445666666665544445555555443
No 250
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=95.81 E-value=0.028 Score=49.31 Aligned_cols=71 Identities=25% Similarity=0.262 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhCCCc---cEEEEecc--ccccCCCCC--CcEEEEeCCCCC----H------------------------
Q 008207 396 SQREVTLAGFRSGKF---MTLVATNV--AARGLDIND--VQLIIQCEPPRD----V------------------------ 440 (574)
Q Consensus 396 ~~r~~~~~~F~~g~~---~vLvaTd~--~~~Gldi~~--v~~VI~~d~p~s----~------------------------ 440 (574)
.+...+++.|++..- .||+++.- ++.|||+++ ++.||..++|.. +
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLF 110 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 345678888887443 69998877 999999997 578998887731 1
Q ss_pred ---hHHHHHhcccccCCCcceEEEEECCC
Q 008207 441 ---EAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 441 ---~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
....|.+||.-|....--++++++++
T Consensus 111 ~a~~~~~Qa~GR~iR~~~D~g~i~l~D~R 139 (142)
T smart00491 111 DAMRALAQAIGRAIRHKNDYGVVVLLDKR 139 (142)
T ss_pred HHHHHHHHHhCccccCccceEEEEEEecc
Confidence 13358889999987654456666654
No 251
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.81 E-value=0.13 Score=54.49 Aligned_cols=22 Identities=27% Similarity=0.178 Sum_probs=17.3
Q ss_pred CCcEEEEccCCChhHHHhHHHH
Q 008207 146 GSDLVGRARTGQGKTLAFVLPI 167 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~lpi 167 (574)
|+-+.+.||||+|||.+.....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHH
Confidence 4568899999999998755444
No 252
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.71 E-value=0.11 Score=54.08 Aligned_cols=133 Identities=15% Similarity=0.200 Sum_probs=63.8
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCC
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg 224 (574)
.|.-+.+.|+||+|||.....-+...+..... ..-.++.+.+--.+ ..+.+..++...++.+....
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~----------~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v~-- 255 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGA----------DKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSIK-- 255 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC----------CeEEEEecCCcchh--HHHHHHHHHHHcCCceecCC--
Confidence 45668899999999998654433322222110 01245666663322 22334444444444443222
Q ss_pred cchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhc-CCcHHHHHHHHHhccCccCceEEEEecc
Q 008207 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSAT 303 (574)
Q Consensus 225 ~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~-~~~~~~~~~il~~l~~~~~~q~ll~SAT 303 (574)
++..+...+. .+.+.+.+++|.+-+.-. .....++..+..... +....+++|||
T Consensus 256 -------------------~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~--~~~~~LVl~at 310 (420)
T PRK14721 256 -------------------DIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGT--QVKHLLLLNAT 310 (420)
T ss_pred -------------------CHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCC--CceEEEEEcCC
Confidence 2222322222 255667788887632210 011223333322111 13456779999
Q ss_pred Cch-hHHHHHHHhc
Q 008207 304 LPS-WVKHISTKFL 316 (574)
Q Consensus 304 ~~~-~~~~~~~~~~ 316 (574)
... .+.++...|-
T Consensus 311 ~~~~~~~~~~~~f~ 324 (420)
T PRK14721 311 SSGDTLDEVISAYQ 324 (420)
T ss_pred CCHHHHHHHHHHhc
Confidence 754 4555555553
No 253
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.70 E-value=0.084 Score=55.33 Aligned_cols=53 Identities=19% Similarity=0.232 Sum_probs=33.0
Q ss_pred ceEEEecCchhhh-cCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhc
Q 008207 262 LKFRVLDEADEML-RMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (574)
Q Consensus 262 ~~~lVlDEah~~l-~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~ 316 (574)
.++||+|.+-++- +....+++..+...... ..-++.++||........++.|.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~p--devlLVvda~~gq~av~~a~~F~ 229 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKP--DEVLLVIDATIGQQAKNQAKAFH 229 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcc--cceeEEEeccccHHHHHHHHHHH
Confidence 3789999995542 22234455566555543 45677889988766656665543
No 254
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.70 E-value=0.055 Score=56.57 Aligned_cols=147 Identities=15% Similarity=0.307 Sum_probs=80.3
Q ss_pred cEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHH-HHHHHHHHHHHhhCCCCceEEEEeCCcc
Q 008207 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE-LAKQVHEDFDVYGGAVGLTSCCLYGGAP 226 (574)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptre-La~Qv~~~~~~~~~~~~~~~~~~~gg~~ 226 (574)
-.++.|..|||||.+.++-++..+.... .+.+++++-|+.. |..-+...+.......++....-....+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~----------~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~ 72 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK----------KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSS 72 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC----------CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCc
Confidence 3678999999999988888877776531 2246899999986 6666677766443333332111111110
Q ss_pred hHHHHHHhcC-CCcEEEECh-HHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccC
Q 008207 227 YHAQEFKLKK-GIDVVIGTP-GRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304 (574)
Q Consensus 227 ~~~~~~~l~~-~~~IlV~Tp-~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~ 304 (574)
. ...+.. +..|++..- +..-+ +. ....+.++.+|||..+. .+.+..++..+........+++|.|.
T Consensus 73 ~---~i~~~~~g~~i~f~g~~d~~~~-ik----~~~~~~~~~idEa~~~~----~~~~~~l~~rlr~~~~~~~i~~t~NP 140 (396)
T TIGR01547 73 M---EIKILNTGKKFIFKGLNDKPNK-LK----SGAGIAIIWFEEASQLT----FEDIKELIPRLRETGGKKFIIFSSNP 140 (396)
T ss_pred c---EEEecCCCeEEEeecccCChhH-hh----CcceeeeehhhhhhhcC----HHHHHHHHHHhhccCCccEEEEEcCc
Confidence 0 000111 334554332 11111 11 12336899999999874 23455555555432222357888887
Q ss_pred chhHHHHHHHhc
Q 008207 305 PSWVKHISTKFL 316 (574)
Q Consensus 305 ~~~~~~~~~~~~ 316 (574)
+..-..+.+.|+
T Consensus 141 ~~~~~w~~~~f~ 152 (396)
T TIGR01547 141 ESPLHWVKKRFI 152 (396)
T ss_pred CCCccHHHHHHH
Confidence 653344445554
No 255
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.69 E-value=0.083 Score=63.22 Aligned_cols=63 Identities=27% Similarity=0.330 Sum_probs=45.3
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEccCCChhHHHh--HHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHH
Q 008207 131 SLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAF--VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (574)
Q Consensus 131 ~~~~~Q~~~i~~il~~--~dvi~~a~TGsGKTla~--~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (574)
.+++-|.+++..++.. +-+++.|..|+|||.+. ++-++..+... .+.+++.++||---+..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~-----------~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPES-----------ERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhc-----------cCceEEEEechHHHHHHHH
Confidence 7899999999999965 66999999999999863 23333333221 2345888999976666553
No 256
>PRK08116 hypothetical protein; Validated
Probab=95.66 E-value=0.31 Score=47.84 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=28.6
Q ss_pred CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHH
Q 008207 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~ 207 (574)
.-+++.|++|+|||..+. .+.+.+.... ..+++ .+..+|...+...+
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~~~------------~~v~~-~~~~~ll~~i~~~~ 161 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIEKG------------VPVIF-VNFPQLLNRIKSTY 161 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHHcC------------CeEEE-EEHHHHHHHHHHHH
Confidence 349999999999997643 4555554321 12444 45556666554443
No 257
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.64 E-value=0.11 Score=49.93 Aligned_cols=44 Identities=11% Similarity=0.218 Sum_probs=25.4
Q ss_pred ceEEEecCchhhhcC-CcHHHHHHHHHhccCccCceEEEEeccCch
Q 008207 262 LKFRVLDEADEMLRM-GFVEDVELILGKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 262 ~~~lVlDEah~~l~~-~~~~~~~~il~~l~~~~~~q~ll~SAT~~~ 306 (574)
+++|||||+|.+... .+...+-.++..+....+. .+++|++.|+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~-~li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRT-RLLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCC-eEEEeCCCCh
Confidence 478999999987532 2344455555554332223 4556666554
No 258
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.60 E-value=0.1 Score=54.94 Aligned_cols=19 Identities=21% Similarity=0.095 Sum_probs=15.5
Q ss_pred cEEEEccCCChhHHHhHHH
Q 008207 148 DLVGRARTGQGKTLAFVLP 166 (574)
Q Consensus 148 dvi~~a~TGsGKTla~~lp 166 (574)
.+|++||.|+|||.++.+.
T Consensus 42 a~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARIL 60 (484)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3799999999999875443
No 259
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.59 E-value=0.13 Score=51.93 Aligned_cols=36 Identities=14% Similarity=0.267 Sum_probs=26.5
Q ss_pred CcHHHHHHHHHHhc--C---CcEEEEccCCChhHHHhHHHH
Q 008207 132 LFPIQAMTFDMVLD--G---SDLVGRARTGQGKTLAFVLPI 167 (574)
Q Consensus 132 ~~~~Q~~~i~~il~--~---~dvi~~a~TGsGKTla~~lpi 167 (574)
++|||...+..+.. + +-+++.||.|.|||..+...+
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a 42 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAA 42 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHH
Confidence 36888888877763 2 348899999999997654433
No 260
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.59 E-value=0.14 Score=62.26 Aligned_cols=65 Identities=26% Similarity=0.327 Sum_probs=44.5
Q ss_pred CCCcHHHHHHHHHHhcC--CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHH
Q 008207 130 ESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il~~--~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv 203 (574)
..+++.|.+++..++.+ +-+++.|..|+|||... -.++..+.... ...+.+++.++||---|.++
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~--------~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLP--------ESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhh--------cccCceEEEECCcHHHHHHH
Confidence 47899999999999975 46899999999999863 22332222100 01233588899997666554
No 261
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.53 E-value=0.032 Score=60.62 Aligned_cols=126 Identities=19% Similarity=0.141 Sum_probs=74.3
Q ss_pred CCCcHHHHHHHHHHhcC--CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHH-H
Q 008207 130 ESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE-D 206 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il~~--~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~-~ 206 (574)
...+|+|.+.+..+... +.|+++.++-+|||.+.+..+...+...+. -+|++.||.++|..+.. .
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~------------~~l~v~Pt~~~a~~~~~~r 82 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPG------------PMLYVQPTDDAAKDFSKER 82 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCC------------CEEEEEEcHHHHHHHHHHH
Confidence 36789999999888754 579999999999999665555544444432 28999999999998874 4
Q ss_pred HHHhhCCCCceEEEEeC----CcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhh
Q 008207 207 FDVYGGAVGLTSCCLYG----GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (574)
Q Consensus 207 ~~~~~~~~~~~~~~~~g----g~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l 274 (574)
+.........--..+.. ..........+. +..+.++..+.- ..+.-..+++|++||+|.+.
T Consensus 83 l~Pmi~~sp~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 83 LDPMIRASPVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSP------SNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHHHHHhCHHHHHHhCchhhcccCCchhheecC-CCEEEEEeCCCC------cccccCCcCEEEEechhhcc
Confidence 54433322110011111 000001111111 233444322111 12345568999999999984
No 262
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.44 E-value=0.21 Score=50.80 Aligned_cols=23 Identities=26% Similarity=0.098 Sum_probs=17.5
Q ss_pred CCcEEEEccCCChhHHHhHHHHH
Q 008207 146 GSDLVGRARTGQGKTLAFVLPIL 168 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~lpil 168 (574)
++.++++||||+|||....--+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56788999999999986544443
No 263
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.43 E-value=0.89 Score=49.06 Aligned_cols=112 Identities=19% Similarity=0.227 Sum_probs=73.4
Q ss_pred CCeEEEEecChHHHHHHHHhCCCCc----------cccccCCHHHHHHHHHHHh----CCCccEEEEe--ccccccCCCC
Q 008207 363 GGRTIIFTETKESASQLADLLPGAR----------ALHGDIQQSQREVTLAGFR----SGKFMTLVAT--NVAARGLDIN 426 (574)
Q Consensus 363 ~~~~lVF~~t~~~~~~l~~~l~~~~----------~lh~~~~~~~r~~~~~~F~----~g~~~vLvaT--d~~~~Gldi~ 426 (574)
++.+++|+++.+-...+...+..-+ ++.-.... -..+++.|. .|.-.+|+|. .-++.|||+.
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~--~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~ 706 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT--VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFS 706 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc--HHHHHHHHHHHhhcCCCeEEEEEeccccccccccc
Confidence 3789999999998887777664111 11111111 345566664 3555677765 5678999998
Q ss_pred C--CcEEEEeCCCCC------------------------Hh--------HHHHHhcccccCCCcceEEEEECCC--chHH
Q 008207 427 D--VQLIIQCEPPRD------------------------VE--------AYIHRSGRTGRAGNTGVAVMLYDPR--KSSV 470 (574)
Q Consensus 427 ~--v~~VI~~d~p~s------------------------~~--------~yiqr~GR~gR~g~~G~~i~l~~~~--~~~~ 470 (574)
+ ++.||..++|.. -+ .--|-+|||-|..+.=.++.|++.+ ....
T Consensus 707 D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~RY~~p~~ 786 (821)
T KOG1133|consen 707 DDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDKRYARPLS 786 (821)
T ss_pred cccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehhhhcCchh
Confidence 6 788999998852 11 2248899999987777888888876 3334
Q ss_pred HHHHHH
Q 008207 471 SKIERE 476 (574)
Q Consensus 471 ~~i~~~ 476 (574)
+++-++
T Consensus 787 RKLp~W 792 (821)
T KOG1133|consen 787 RKLPKW 792 (821)
T ss_pred hhccHH
Confidence 444333
No 264
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.43 E-value=0.2 Score=45.73 Aligned_cols=104 Identities=20% Similarity=0.134 Sum_probs=60.8
Q ss_pred cEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcch
Q 008207 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227 (574)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~ 227 (574)
=.++.||++||||...+--+......+ -++++..|-..- +++ ...+.-.-|..
T Consensus 6 l~~i~gpM~SGKT~eLl~r~~~~~~~g-------------~~v~vfkp~iD~---------R~~----~~~V~Sr~G~~- 58 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRARRYKEAG-------------MKVLVFKPAIDT---------RYG----VGKVSSRIGLS- 58 (201)
T ss_pred EEEEEccCcCcchHHHHHHHHHHHHcC-------------CeEEEEeccccc---------ccc----cceeeeccCCc-
Confidence 357899999999986555444444333 248888886210 111 11111111211
Q ss_pred HHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHhc
Q 008207 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289 (574)
Q Consensus 228 ~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l 289 (574)
..-++|-.+..+.+.+........ +++|.||||+-+ +......+..+...+
T Consensus 59 ---------~~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~-~~~~v~~l~~lad~l 109 (201)
T COG1435 59 ---------SEAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFF-DEELVYVLNELADRL 109 (201)
T ss_pred ---------ccceecCChHHHHHHHHhcccCCC-cCEEEEehhHhC-CHHHHHHHHHHHhhc
Confidence 145777788888888876443332 889999999955 444445555555543
No 265
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.43 E-value=0.071 Score=63.74 Aligned_cols=124 Identities=20% Similarity=0.190 Sum_probs=79.7
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHh
Q 008207 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (574)
Q Consensus 131 ~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (574)
++|+-|.++|. ..+++++|.|..|||||.+..--++..+..+.. .-++|+|+=|+..|..+.+.+..-
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~----------~~~il~~tFt~~aa~e~~~ri~~~ 68 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVD----------IDRLLVVTFTNAAAREMKERIEEA 68 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCC----------HhhEEEEeccHHHHHHHHHHHHHH
Confidence 36889999997 468899999999999999877777776654411 124899999999999888877543
Q ss_pred hCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCc--eEEEecCchh
Q 008207 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSL--KFRVLDEADE 272 (574)
Q Consensus 211 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~--~~lVlDEah~ 272 (574)
.... +. .........+.+..-...-|+|-..+...+.+.....-++ .+=|.||...
T Consensus 69 l~~~-~~-----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 69 LQKA-LQ-----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred HHHH-Hh-----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 2110 00 0001111222333335678999988877665543322222 4456888775
No 266
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.37 E-value=0.14 Score=54.31 Aligned_cols=91 Identities=21% Similarity=0.158 Sum_probs=60.6
Q ss_pred CCCHH-HHHHHHHCCCCCCcH----HHHHHHHHHh--cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 008207 115 RISVP-LREKLKSKGIESLFP----IQAMTFDMVL--DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (574)
Q Consensus 115 ~l~~~-l~~~l~~~g~~~~~~----~Q~~~i~~il--~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (574)
++..+ |+..|++.--..+.. +|.+==..|. .++-++|+|..|||||.+++--+...+...+.. ..+
T Consensus 188 ~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~-------l~~ 260 (747)
T COG3973 188 GGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGP-------LQA 260 (747)
T ss_pred chHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccc-------ccc
Confidence 34444 556777765555554 3444333344 466799999999999998766655555554332 122
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhC
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGG 212 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~ 212 (574)
..+||+.|.+-+..-+.+.+-.+|.
T Consensus 261 k~vlvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 261 KPVLVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred CceEEEcCcHHHHHHHHHhchhhcc
Confidence 2399999999999998888877764
No 267
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.36 E-value=0.11 Score=57.17 Aligned_cols=156 Identities=17% Similarity=0.141 Sum_probs=91.7
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHhcCC--cEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEe
Q 008207 117 SVPLREKLKSKGIESLFPIQAMTFDMVLDGS--DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194 (574)
Q Consensus 117 ~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~--dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~ 194 (574)
++..-..+.....+....-|.+.+..++.++ -+++.|.-|=|||.+..+.+........ ..+++|.+
T Consensus 200 ~~~~~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~-----------~~~iiVTA 268 (758)
T COG1444 200 DPVFPRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAG-----------SVRIIVTA 268 (758)
T ss_pred CCCCCHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcC-----------CceEEEeC
Confidence 3333444666666666666666777777543 5889999999999998877743332221 34699999
Q ss_pred CcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhh
Q 008207 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (574)
Q Consensus 195 PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l 274 (574)
|+.+-+..+...+.+-....|++-......... ....-.+...|=+-+|.... ..-++||||||=.+-
T Consensus 269 P~~~nv~~Lf~fa~~~l~~lg~~~~v~~d~~g~--~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp 336 (758)
T COG1444 269 PTPANVQTLFEFAGKGLEFLGYKRKVAPDALGE--IREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP 336 (758)
T ss_pred CCHHHHHHHHHHHHHhHHHhCCccccccccccc--eeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC
Confidence 999988887776654433344332211111000 00000112335555555442 116799999998663
Q ss_pred cCCcHHHHHHHHHhccCccCceEEEEeccCc
Q 008207 275 RMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (574)
Q Consensus 275 ~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~ 305 (574)
..-+..++... +.++||.|+.
T Consensus 337 ----lplL~~l~~~~------~rv~~sTTIh 357 (758)
T COG1444 337 ----LPLLHKLLRRF------PRVLFSTTIH 357 (758)
T ss_pred ----hHHHHHHHhhc------CceEEEeeec
Confidence 44555555433 5688999964
No 268
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.33 E-value=0.051 Score=52.79 Aligned_cols=50 Identities=24% Similarity=0.346 Sum_probs=35.0
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHH
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~ 208 (574)
++.++++.|++|+|||..+.. +.+.+.... . -++.+++.+|+.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~A-i~~~l~~~g------------~-sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIA-IGNELLKAG------------I-SVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHH-HHHHHHHcC------------C-eEEEEEHHHHHHHHHHHHh
Confidence 788999999999999986433 334444321 2 3455688899998877664
No 269
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.32 E-value=0.19 Score=52.54 Aligned_cols=42 Identities=14% Similarity=0.247 Sum_probs=27.1
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccC
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~ 304 (574)
....+++||||+|.|.. .....++..+..+++.-+++|.++-
T Consensus 125 ~~~~kvvIIdea~~l~~----~~~~~LLk~LEep~~~t~~Il~t~~ 166 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSI----AAFNAFLKTLEEPPPHAIFIFATTE 166 (397)
T ss_pred cCCeEEEEEeChhhCCH----HHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 56779999999999853 3445566666554344455555553
No 270
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.32 E-value=0.12 Score=57.48 Aligned_cols=131 Identities=15% Similarity=0.219 Sum_probs=64.5
Q ss_pred CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEE-eCcHHHHHHHHHHHHHhhCCCCceEEEEeCC
Q 008207 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL-LPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil-~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg 224 (574)
++-+.++||||+|||.++..-.......... .++.++ +-|--.+ ..+.++.++...++.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~-----------kkV~lit~Dt~Rig--A~eQL~~~a~~~gvpv------ 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGA-----------DQLALLTTDSFRIG--ALEQLRIYGRILGVPV------ 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCC-----------CeEEEecCcccchH--HHHHHHHHHHhCCCCc------
Confidence 4557899999999998755444333222110 023333 3221111 1234444444333332
Q ss_pred cchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcC-CcHHHHHHHHHhccCccCceEEEEecc
Q 008207 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM-GFVEDVELILGKVEDANKVQTLLFSAT 303 (574)
Q Consensus 225 ~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~-~~~~~~~~il~~l~~~~~~q~ll~SAT 303 (574)
.++.+|..+.+.+.. +.+.++|+||=+=+.-.. .....+..+...... ...++++|||
T Consensus 246 ---------------~~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p--~e~~LVLsAt 304 (767)
T PRK14723 246 ---------------HAVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRP--VRRLLLLNAA 304 (767)
T ss_pred ---------------cccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCC--CeEEEEECCC
Confidence 223456666555542 445678888877654211 122333333332222 3456778888
Q ss_pred Cch-hHHHHHHHhc
Q 008207 304 LPS-WVKHISTKFL 316 (574)
Q Consensus 304 ~~~-~~~~~~~~~~ 316 (574)
... .+.++...|-
T Consensus 305 ~~~~~l~~i~~~f~ 318 (767)
T PRK14723 305 SHGDTLNEVVHAYR 318 (767)
T ss_pred CcHHHHHHHHHHHh
Confidence 653 3444555553
No 271
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.30 E-value=0.077 Score=52.07 Aligned_cols=124 Identities=15% Similarity=0.180 Sum_probs=63.3
Q ss_pred CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHH-HhhCCCCceEEEEeCCc
Q 008207 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD-VYGGAVGLTSCCLYGGA 225 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~-~~~~~~~~~~~~~~gg~ 225 (574)
.+++++|+||.|||... ++.......... .....-|-++|-+|...-....+..+- .++.. ++. ..
T Consensus 62 p~lLivG~snnGKT~Ii-----~rF~~~hp~~~d-~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP--~~~-----~~ 128 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII-----ERFRRLHPPQSD-EDAERIPVVYVQMPPEPDERRFYSAILEALGAP--YRP-----RD 128 (302)
T ss_pred CceEEecCCCCcHHHHH-----HHHHHHCCCCCC-CCCccccEEEEecCCCCChHHHHHHHHHHhCcc--cCC-----CC
Confidence 57999999999999832 222211111111 112344677888888776666666653 33321 110 11
Q ss_pred chHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHH--HHHHHHHhccCccCceEEEEecc
Q 008207 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVE--DVELILGKVEDANKVQTLLFSAT 303 (574)
Q Consensus 226 ~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~--~~~~il~~l~~~~~~q~ll~SAT 303 (574)
+...... ..+.++ .--++++|||||.|.++..+... .+...++.+.+.-.+.++++ +|
T Consensus 129 ~~~~~~~--------------~~~~ll-----r~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~v-Gt 188 (302)
T PF05621_consen 129 RVAKLEQ--------------QVLRLL-----RRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGV-GT 188 (302)
T ss_pred CHHHHHH--------------HHHHHH-----HHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEe-cc
Confidence 1111000 111222 23457899999999998655332 23344444443223444443 44
No 272
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.29 E-value=0.11 Score=49.63 Aligned_cols=44 Identities=9% Similarity=0.128 Sum_probs=25.5
Q ss_pred CceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCch
Q 008207 261 SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 261 ~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~ 306 (574)
+.++|||||+|.+.. .-...+..++...... ...+++++++.++
T Consensus 90 ~~~~liiDdi~~l~~-~~~~~L~~~~~~~~~~-~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDD-AQQIALFNLFNRVRAH-GQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCc-hHHHHHHHHHHHHHHc-CCcEEEEeCCCCH
Confidence 456899999998742 2234444455444331 2234677777654
No 273
>CHL00181 cbbX CbbX; Provisional
Probab=95.29 E-value=0.32 Score=48.27 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=16.9
Q ss_pred CCcEEEEccCCChhHHHhHHH
Q 008207 146 GSDLVGRARTGQGKTLAFVLP 166 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~lp 166 (574)
+.++++.||+|+|||..+-.-
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 557999999999999865443
No 274
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.28 E-value=0.26 Score=49.77 Aligned_cols=27 Identities=30% Similarity=0.317 Sum_probs=19.5
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~ 172 (574)
.+.++++.|+||+|||.... .+...+.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~-aIa~~l~ 208 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSN-CIAKELL 208 (329)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHH
Confidence 45889999999999997533 3444443
No 275
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.27 E-value=0.042 Score=52.22 Aligned_cols=108 Identities=19% Similarity=0.227 Sum_probs=60.5
Q ss_pred cEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcch
Q 008207 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227 (574)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~ 227 (574)
-+++.|++|+|||-. +..+.+.+... ..+.+++++... +....+...+..
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~----------~~~~~v~y~~~~-~f~~~~~~~~~~------------------ 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQ----------HPGKRVVYLSAE-EFIREFADALRD------------------ 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHH----------CTTS-EEEEEHH-HHHHHHHHHHHT------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhc----------cccccceeecHH-HHHHHHHHHHHc------------------
Confidence 489999999999973 44444444321 112347776533 444444333321
Q ss_pred HHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCC-cHHHHHHHHHhccCccCceEEEEeccCch
Q 008207 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 228 ~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~-~~~~~~~il~~l~~~~~~q~ll~SAT~~~ 306 (574)
.....+.+ .+.+.++|+||.+|.+.... ....+-.++..+... ..++|+.|...|.
T Consensus 86 ---------------~~~~~~~~-------~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~-~k~li~ts~~~P~ 142 (219)
T PF00308_consen 86 ---------------GEIEEFKD-------RLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIES-GKQLILTSDRPPS 142 (219)
T ss_dssp ---------------TSHHHHHH-------HHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT-TSEEEEEESS-TT
T ss_pred ---------------ccchhhhh-------hhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhh-CCeEEEEeCCCCc
Confidence 01111222 25578999999999875432 344555666665443 4577776767665
Q ss_pred hH
Q 008207 307 WV 308 (574)
Q Consensus 307 ~~ 308 (574)
.+
T Consensus 143 ~l 144 (219)
T PF00308_consen 143 EL 144 (219)
T ss_dssp TT
T ss_pred cc
Confidence 44
No 276
>PLN03025 replication factor C subunit; Provisional
Probab=95.27 E-value=0.19 Score=50.86 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=15.0
Q ss_pred CcEEEEccCCChhHHHhH
Q 008207 147 SDLVGRARTGQGKTLAFV 164 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~~ 164 (574)
.++++.||+|+|||....
T Consensus 35 ~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 35 PNLILSGPPGTGKTTSIL 52 (319)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999997543
No 277
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.23 E-value=0.12 Score=46.61 Aligned_cols=43 Identities=23% Similarity=0.376 Sum_probs=26.7
Q ss_pred CCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCch
Q 008207 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 260 ~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~ 306 (574)
...+++|||+||.|. ......+++.+..++..-.++|.++-+.
T Consensus 101 ~~~KviiI~~ad~l~----~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLT----EEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-----HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CCceEEEeehHhhhh----HHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 568999999999885 3445556665555444445555555443
No 278
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.22 E-value=0.11 Score=50.91 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=15.7
Q ss_pred CCcEEEEccCCChhHHHhH
Q 008207 146 GSDLVGRARTGQGKTLAFV 164 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~ 164 (574)
..++++.||+|+|||..+-
T Consensus 42 ~~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred cceEEEEcCCCCCHHHHHH
Confidence 3579999999999998643
No 279
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.21 E-value=0.15 Score=54.25 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=27.0
Q ss_pred CCceEEEecCchhhhcCC-cHHHHHHHHHhccCccCceEEEEeccCc-hhHH
Q 008207 260 SSLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATLP-SWVK 309 (574)
Q Consensus 260 ~~~~~lVlDEah~~l~~~-~~~~~~~il~~l~~~~~~q~ll~SAT~~-~~~~ 309 (574)
.++++|||||+|.+.... ....+-.++..+... ..++ +++++.+ ..+.
T Consensus 210 ~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~-~~~i-iits~~~p~~l~ 259 (450)
T PRK00149 210 RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEA-GKQI-VLTSDRPPKELP 259 (450)
T ss_pred hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC-CCcE-EEECCCCHHHHH
Confidence 357799999999874322 233455555555432 3454 4555544 4443
No 280
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.20 E-value=0.33 Score=47.71 Aligned_cols=57 Identities=16% Similarity=0.250 Sum_probs=31.7
Q ss_pred CCceEEEecCchhhh-cCCcHHHHHHHHHhcc----CccCceEEEEeccCchhHHHHHHHhc
Q 008207 260 SSLKFRVLDEADEML-RMGFVEDVELILGKVE----DANKVQTLLFSATLPSWVKHISTKFL 316 (574)
Q Consensus 260 ~~~~~lVlDEah~~l-~~~~~~~~~~il~~l~----~~~~~q~ll~SAT~~~~~~~~~~~~~ 316 (574)
.++++||+|=+-++- +.....++..+...++ ..+.--+++++||........+..|.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFN 214 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHH
Confidence 445677777665542 2223445555554443 12245678899997765555555554
No 281
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.19 E-value=0.19 Score=53.21 Aligned_cols=111 Identities=14% Similarity=0.106 Sum_probs=59.8
Q ss_pred CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcc
Q 008207 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~ 226 (574)
..+++.|++|+|||... ..+.+.+.... .+.+++++.+ .++...+...+..-.
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~----------~~~~v~yv~~-~~f~~~~~~~l~~~~--------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNF----------SDLKVSYMSG-DEFARKAVDILQKTH--------------- 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhC----------CCCeEEEEEH-HHHHHHHHHHHHHhh---------------
Confidence 45899999999999642 34444443221 1234666654 566666555543200
Q ss_pred hHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcC-CcHHHHHHHHHhccCccCceEEEEeccCc
Q 008207 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM-GFVEDVELILGKVEDANKVQTLLFSATLP 305 (574)
Q Consensus 227 ~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~-~~~~~~~~il~~l~~~~~~q~ll~SAT~~ 305 (574)
+.+..... .+.++++|||||+|.+... ...+.+-.++..+... ..|+|+.|-..|
T Consensus 195 -------------------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~-~k~iIltsd~~P 250 (450)
T PRK14087 195 -------------------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIEN-DKQLFFSSDKSP 250 (450)
T ss_pred -------------------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHc-CCcEEEECCCCH
Confidence 01111111 2456789999999977432 2345566666665442 235554444444
Q ss_pred hhH
Q 008207 306 SWV 308 (574)
Q Consensus 306 ~~~ 308 (574)
...
T Consensus 251 ~~l 253 (450)
T PRK14087 251 ELL 253 (450)
T ss_pred HHH
Confidence 333
No 282
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.19 E-value=0.11 Score=54.91 Aligned_cols=55 Identities=9% Similarity=0.132 Sum_probs=31.1
Q ss_pred CCCceEEEecCchhhhcCC-cHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHH
Q 008207 259 LSSLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTK 314 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~-~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~ 314 (574)
+.+.++|+|||+|.+.... ....+-.++..+... ..++++.|-+.|..+..+...
T Consensus 200 ~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~-~k~IIlts~~~p~~l~~l~~r 255 (445)
T PRK12422 200 YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTE-GKLIVISSTCAPQDLKAMEER 255 (445)
T ss_pred cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHC-CCcEEEecCCCHHHHhhhHHH
Confidence 3467899999999875432 244455555544332 345555444456555444333
No 283
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.15 E-value=0.49 Score=48.99 Aligned_cols=57 Identities=11% Similarity=0.108 Sum_probs=31.9
Q ss_pred CCceEEEecCchhhh-cCCcHHHHHHHHHhccC-ccCceEEEEeccCch-hHHHHHHHhc
Q 008207 260 SSLKFRVLDEADEML-RMGFVEDVELILGKVED-ANKVQTLLFSATLPS-WVKHISTKFL 316 (574)
Q Consensus 260 ~~~~~lVlDEah~~l-~~~~~~~~~~il~~l~~-~~~~q~ll~SAT~~~-~~~~~~~~~~ 316 (574)
.+.++|+||=+-++. +......+..++..... .+.-.++++|||... .+......|-
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~ 357 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYE 357 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhc
Confidence 456789999665442 12223444455544322 112356788999876 5555555553
No 284
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.15 E-value=0.14 Score=52.22 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=14.8
Q ss_pred cEEEEccCCChhHHHhH
Q 008207 148 DLVGRARTGQGKTLAFV 164 (574)
Q Consensus 148 dvi~~a~TGsGKTla~~ 164 (574)
.+++.||+|+|||....
T Consensus 38 ~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVR 54 (337)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 79999999999998643
No 285
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.14 E-value=0.28 Score=49.79 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=29.6
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCch
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~ 306 (574)
....+++|||+||+|- ......+++.+..++..-++++.+.-+.
T Consensus 106 ~g~~kV~iI~~ae~m~----~~AaNaLLKtLEEPp~~t~fiL~t~~~~ 149 (334)
T PRK07993 106 LGGAKVVWLPDAALLT----DAAANALLKTLEEPPENTWFFLACREPA 149 (334)
T ss_pred cCCceEEEEcchHhhC----HHHHHHHHHHhcCCCCCeEEEEEECChh
Confidence 4568999999999995 4455667777766555455555555443
No 286
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.13 E-value=0.066 Score=58.32 Aligned_cols=43 Identities=16% Similarity=0.284 Sum_probs=26.4
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCc
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~ 305 (574)
....+++||||+|.|.. .....+++.+..++..-+++|.+|-+
T Consensus 117 ~~~~kViIIDE~~~Lt~----~a~naLLKtLEepp~~~ifIlatt~~ 159 (559)
T PRK05563 117 EAKYKVYIIDEVHMLST----GAFNALLKTLEEPPAHVIFILATTEP 159 (559)
T ss_pred cCCeEEEEEECcccCCH----HHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 45689999999998853 33455565555443333444555544
No 287
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.12 E-value=0.19 Score=55.50 Aligned_cols=42 Identities=17% Similarity=0.319 Sum_probs=24.2
Q ss_pred CCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCc
Q 008207 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (574)
Q Consensus 260 ~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~ 305 (574)
..++++||||+|.|.... ...+++.+...+..-+++|++|-+
T Consensus 118 gr~KVIIIDEah~LT~~A----~NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA----FNAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred CCceEEEEeChhhCCHHH----HHHHHHHHHhcCCCeEEEEEECCh
Confidence 457899999999885433 333444443322334455555543
No 288
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.12 E-value=0.53 Score=51.58 Aligned_cols=43 Identities=16% Similarity=0.312 Sum_probs=26.5
Q ss_pred CCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCch
Q 008207 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 260 ~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~ 306 (574)
..++++||||+|+|.. .....+++.+..++..-+++|.+|-+.
T Consensus 123 g~~KV~IIDEvh~Ls~----~a~NaLLKtLEEPP~~~~fIL~Ttd~~ 165 (618)
T PRK14951 123 GRFKVFMIDEVHMLTN----TAFNAMLKTLEEPPEYLKFVLATTDPQ 165 (618)
T ss_pred CCceEEEEEChhhCCH----HHHHHHHHhcccCCCCeEEEEEECCch
Confidence 4689999999998853 334556666655433334455555443
No 289
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.11 E-value=0.072 Score=53.54 Aligned_cols=67 Identities=21% Similarity=0.258 Sum_probs=44.2
Q ss_pred HHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHH
Q 008207 121 REKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTREL 199 (574)
Q Consensus 121 ~~~l~~~g~~~~~~~Q~~~i~~-il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreL 199 (574)
+..|...|+ +++.|.+.+.. +..+++++++|+||||||.. +-.++..+.... ...+++++-.+.||
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~----------~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQD----------PTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcC----------CCceEEEEcCCCcc
Confidence 445555565 45677777765 55788999999999999953 444554442111 12357888888877
Q ss_pred H
Q 008207 200 A 200 (574)
Q Consensus 200 a 200 (574)
.
T Consensus 191 ~ 191 (319)
T PRK13894 191 Q 191 (319)
T ss_pred c
Confidence 4
No 290
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.08 E-value=0.17 Score=54.19 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=25.2
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEecc
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT 303 (574)
....+++||||+|.|.. ..+..+++.+..++..-+++|.+|
T Consensus 126 ~~~~KVvIIDEa~~Ls~----~a~naLLk~LEepp~~~vfI~aTt 166 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSK----GAFNALLKTLEEPPPHIIFIFATT 166 (507)
T ss_pred cCCcEEEEEEChhhcCH----HHHHHHHHHHhhcCCCEEEEEEeC
Confidence 45689999999998753 344555555554433334445444
No 291
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.05 E-value=0.42 Score=52.54 Aligned_cols=40 Identities=20% Similarity=0.372 Sum_probs=24.1
Q ss_pred CCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEecc
Q 008207 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (574)
Q Consensus 260 ~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT 303 (574)
...+++||||||+|.. .....+++.+..++..-+++|..|
T Consensus 118 g~~KV~IIDEah~Ls~----~a~NALLKtLEEPp~~v~FIL~Tt 157 (647)
T PRK07994 118 GRFKVYLIDEVHMLSR----HSFNALLKTLEEPPEHVKFLLATT 157 (647)
T ss_pred CCCEEEEEechHhCCH----HHHHHHHHHHHcCCCCeEEEEecC
Confidence 4678999999998853 334555555544333333444444
No 292
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.03 E-value=0.16 Score=53.07 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=17.7
Q ss_pred CcEEEEccCCChhHHHhHHHHHHHH
Q 008207 147 SDLVGRARTGQGKTLAFVLPILESL 171 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l 171 (574)
.++++.|++|+|||... --++..+
T Consensus 56 ~~~lI~G~~GtGKT~l~-~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV-KKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHH
Confidence 57999999999999863 3334444
No 293
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.038 Score=53.86 Aligned_cols=28 Identities=36% Similarity=0.428 Sum_probs=19.7
Q ss_pred hcCCcEEEEccCCChhHHHhHHHHHHHHhC
Q 008207 144 LDGSDLVGRARTGQGKTLAFVLPILESLTN 173 (574)
Q Consensus 144 l~~~dvi~~a~TGsGKTla~~lpil~~l~~ 173 (574)
+...|+++.||||||||+.+ --+..+++
T Consensus 95 L~KSNILLiGPTGsGKTlLA--qTLAk~Ln 122 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLA--QTLAKILN 122 (408)
T ss_pred eeeccEEEECCCCCcHHHHH--HHHHHHhC
Confidence 34568999999999999843 23344444
No 294
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.00 E-value=0.19 Score=53.47 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=25.4
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCc
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~ 305 (574)
....++|||||+|+|.. .....++..+..++..-++++.+|-+
T Consensus 115 ~~~~kVvIIDE~h~Lt~----~a~~~LLk~LE~p~~~vv~Ilattn~ 157 (472)
T PRK14962 115 EGKYKVYIIDEVHMLTK----EAFNALLKTLEEPPSHVVFVLATTNL 157 (472)
T ss_pred cCCeEEEEEEChHHhHH----HHHHHHHHHHHhCCCcEEEEEEeCCh
Confidence 45678999999998852 33455555554433323334455533
No 295
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.98 E-value=0.26 Score=54.11 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=26.6
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEecc
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT 303 (574)
+...+++||||+|.|.. .....+++.+..++..-+++|.+|
T Consensus 125 ~~~~KVvIIdEad~Lt~----~a~naLLK~LEePp~~tv~IL~t~ 165 (620)
T PRK14954 125 KGRYRVYIIDEVHMLST----AAFNAFLKTLEEPPPHAIFIFATT 165 (620)
T ss_pred cCCCEEEEEeChhhcCH----HHHHHHHHHHhCCCCCeEEEEEeC
Confidence 56789999999998853 345566666665443334445444
No 296
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.97 E-value=0.17 Score=62.99 Aligned_cols=62 Identities=23% Similarity=0.315 Sum_probs=44.5
Q ss_pred CCCcHHHHHHHHHHhcC--CcEEEEccCCChhHHHhH---HHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHH
Q 008207 130 ESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFV---LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il~~--~dvi~~a~TGsGKTla~~---lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv 203 (574)
..+++.|.+++..++.+ +-+++.|..|+|||.... -++.+.+.. .+.+++.++||-.-|.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~------------~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES------------EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh------------cCCeEEEEeChHHHHHHH
Confidence 47899999999999866 457889999999998641 233333332 123588899996666554
No 297
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.97 E-value=0.23 Score=53.37 Aligned_cols=19 Identities=21% Similarity=0.128 Sum_probs=15.3
Q ss_pred cEEEEccCCChhHHHhHHH
Q 008207 148 DLVGRARTGQGKTLAFVLP 166 (574)
Q Consensus 148 dvi~~a~TGsGKTla~~lp 166 (574)
-.|+.||.|+|||.++.+.
T Consensus 40 a~Lf~Gp~G~GKTt~A~~l 58 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRIL 58 (509)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4699999999999865443
No 298
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.97 E-value=0.11 Score=53.79 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=27.7
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCch
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~ 306 (574)
....+++||||+|+|... ....+++.+..++..-++++.+|-+.
T Consensus 115 ~~~~kViiIDead~m~~~----aanaLLk~LEep~~~~~fIL~a~~~~ 158 (394)
T PRK07940 115 TGRWRIVVIEDADRLTER----AANALLKAVEEPPPRTVWLLCAPSPE 158 (394)
T ss_pred cCCcEEEEEechhhcCHH----HHHHHHHHhhcCCCCCeEEEEECChH
Confidence 346789999999999532 23445555544444456666666554
No 299
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.96 E-value=0.23 Score=50.16 Aligned_cols=40 Identities=13% Similarity=0.134 Sum_probs=22.9
Q ss_pred CceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEecc
Q 008207 261 SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (574)
Q Consensus 261 ~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT 303 (574)
..++|||||+|.+........+..++...+. ..++ +++++
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~--~~~~-Ilt~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSK--NCSF-IITAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCC--CceE-EEEcC
Confidence 4679999999988322233445555554433 3444 44554
No 300
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.92 E-value=0.18 Score=54.07 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=25.9
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccC
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~ 304 (574)
+...++|||||+|.|. ...+..++..+..++..-++++.++-
T Consensus 114 ~~~~kVVIIDEad~ls----~~a~naLLk~LEep~~~t~~Il~t~~ 155 (504)
T PRK14963 114 RGGRKVYILDEAHMMS----KSAFNALLKTLEEPPEHVIFILATTE 155 (504)
T ss_pred cCCCeEEEEECccccC----HHHHHHHHHHHHhCCCCEEEEEEcCC
Confidence 4568899999999874 34455666666553332344455543
No 301
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.91 E-value=0.33 Score=48.68 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=29.6
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCch
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~ 306 (574)
....+++|||+||+|. ......+++.+..++..-+++|.++-+.
T Consensus 106 ~~~~kV~iI~~ae~m~----~~AaNaLLKtLEEPp~~t~fiL~t~~~~ 149 (319)
T PRK06090 106 LNGYRLFVIEPADAMN----ESASNALLKTLEEPAPNCLFLLVTHNQK 149 (319)
T ss_pred cCCceEEEecchhhhC----HHHHHHHHHHhcCCCCCeEEEEEECChh
Confidence 4568999999999985 4445666776765555455556655443
No 302
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.90 E-value=0.3 Score=41.77 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=13.0
Q ss_pred EEEEccCCChhHHHh
Q 008207 149 LVGRARTGQGKTLAF 163 (574)
Q Consensus 149 vi~~a~TGsGKTla~ 163 (574)
+++.||+|+|||...
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 689999999999853
No 303
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.86 E-value=0.17 Score=53.51 Aligned_cols=52 Identities=10% Similarity=0.191 Sum_probs=28.9
Q ss_pred CceEEEecCchhhhcCC-cHHHHHHHHHhccCccCceEEEEeccCchhHHHHHH
Q 008207 261 SLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313 (574)
Q Consensus 261 ~~~~lVlDEah~~l~~~-~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~ 313 (574)
+.++|+|||+|.+.+.. ....+..++..+... ..++++.|-..|..+..+..
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~-~k~iIitsd~~p~~l~~l~~ 246 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDS-GKQIVICSDREPQKLSEFQD 246 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHc-CCeEEEECCCCHHHHHHHHH
Confidence 46799999999876432 233455555555432 23544444444554444433
No 304
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.80 E-value=0.077 Score=57.70 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=27.5
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCch
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~ 306 (574)
....++|||||+|.|. ......+++.+..++..-+++|.+|-+.
T Consensus 117 ~g~~kVIIIDEad~Lt----~~a~naLLk~LEEP~~~~ifILaTt~~~ 160 (624)
T PRK14959 117 EGRYKVFIIDEAHMLT----REAFNALLKTLEEPPARVTFVLATTEPH 160 (624)
T ss_pred cCCceEEEEEChHhCC----HHHHHHHHHHhhccCCCEEEEEecCChh
Confidence 3467899999999885 3445566666654333344556666544
No 305
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.77 E-value=0.35 Score=53.20 Aligned_cols=41 Identities=17% Similarity=0.327 Sum_probs=25.7
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEecc
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT 303 (574)
+...++|||||+|.|.. ..+..+++.+...+..-+++|.+|
T Consensus 118 ~~~~kVvIIDEa~~L~~----~a~naLLk~LEepp~~tv~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLST----AAFNALLKTLEEPPPHAIFILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCH----HHHHHHHHHHhcCCCCeEEEEEeC
Confidence 45689999999998853 334555666554433344555554
No 306
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.77 E-value=0.2 Score=54.81 Aligned_cols=41 Identities=17% Similarity=0.313 Sum_probs=25.0
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEecc
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT 303 (574)
+...+++||||+|.|.. .....+++.+..++..-+++|.+|
T Consensus 130 ~a~~KVvIIDEad~Ls~----~a~naLLKtLEePp~~~~fIl~tt 170 (598)
T PRK09111 130 SARYKVYIIDEVHMLST----AAFNALLKTLEEPPPHVKFIFATT 170 (598)
T ss_pred cCCcEEEEEEChHhCCH----HHHHHHHHHHHhCCCCeEEEEEeC
Confidence 45689999999998853 344555555544333333444444
No 307
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.74 E-value=0.3 Score=49.36 Aligned_cols=44 Identities=23% Similarity=0.394 Sum_probs=28.6
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCch
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~ 306 (574)
....+++||||||.|.. +....++..+..++....++|++.-+.
T Consensus 107 ~~~~kviiidead~mt~----~A~nallk~lEep~~~~~~il~~n~~~ 150 (325)
T COG0470 107 EGGYKVVIIDEADKLTE----DAANALLKTLEEPPKNTRFILITNDPS 150 (325)
T ss_pred CCCceEEEeCcHHHHhH----HHHHHHHHHhccCCCCeEEEEEcCChh
Confidence 36789999999999863 444555555544445566666665433
No 308
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.74 E-value=0.12 Score=56.40 Aligned_cols=20 Identities=20% Similarity=0.117 Sum_probs=15.7
Q ss_pred cEEEEccCCChhHHHhHHHH
Q 008207 148 DLVGRARTGQGKTLAFVLPI 167 (574)
Q Consensus 148 dvi~~a~TGsGKTla~~lpi 167 (574)
-+|++||.|+|||.++.+.+
T Consensus 39 AyLF~GPpGvGKTTlAriLA 58 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILA 58 (702)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46999999999998654433
No 309
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.73 E-value=0.11 Score=49.63 Aligned_cols=128 Identities=18% Similarity=0.229 Sum_probs=68.9
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhC-CCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeC
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTN-GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~-~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~g 223 (574)
.|..+++.|++|+|||.-.+-.+.+.+.+ +.. +++++- .+-..++.+.++.++-. +
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~-------------vlyvs~-ee~~~~l~~~~~s~g~d--~------- 74 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEK-------------VLYVSF-EEPPEELIENMKSFGWD--L------- 74 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT---------------EEEEES-SS-HHHHHHHHHTTTS---H-------
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCc-------------EEEEEe-cCCHHHHHHHHHHcCCc--H-------
Confidence 45789999999999998766666666665 432 778774 45567777777655421 0
Q ss_pred CcchHHHHHHhcCCCcEE----------EEChHHHHHhHhcCCccCCCceEEEecCchhhhcC----CcHHHHHHHHHhc
Q 008207 224 GAPYHAQEFKLKKGIDVV----------IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM----GFVEDVELILGKV 289 (574)
Q Consensus 224 g~~~~~~~~~l~~~~~Il----------V~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~----~~~~~~~~il~~l 289 (574)
..... .....++ -..+..+...+.+. +.-.+.+.+|||-...+... .+...+..+...+
T Consensus 75 ----~~~~~--~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~-i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l 147 (226)
T PF06745_consen 75 ----EEYED--SGKLKIIDAFPERIGWSPNDLEELLSKIREA-IEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFL 147 (226)
T ss_dssp ----HHHHH--TTSEEEEESSGGGST-TSCCHHHHHHHHHHH-HHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHH
T ss_pred ----HHHhh--cCCEEEEecccccccccccCHHHHHHHHHHH-HHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 00000 0011111 11233333333221 11112379999998887222 2455566666666
Q ss_pred cCccCceEEEEeccC
Q 008207 290 EDANKVQTLLFSATL 304 (574)
Q Consensus 290 ~~~~~~q~ll~SAT~ 304 (574)
.. .-.+.++++..
T Consensus 148 ~~--~~~t~llt~~~ 160 (226)
T PF06745_consen 148 KS--RGVTTLLTSEM 160 (226)
T ss_dssp HH--TTEEEEEEEEE
T ss_pred HH--CCCEEEEEEcc
Confidence 54 33566666663
No 310
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.70 E-value=0.32 Score=46.55 Aligned_cols=54 Identities=19% Similarity=0.119 Sum_probs=33.7
Q ss_pred hcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhh
Q 008207 144 LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (574)
Q Consensus 144 l~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~ 211 (574)
..|.-+++.|++|+|||......+...+..+ .++++++.. +-..+..+.+..++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-------------~~~~yi~~e-~~~~~~~~~~~~~g 75 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNG-------------YSVSYVSTQ-LTTTEFIKQMMSLG 75 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-------------CcEEEEeCC-CCHHHHHHHHHHhC
Confidence 4577899999999999986444444433332 237888743 44455555554443
No 311
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.67 E-value=0.73 Score=50.25 Aligned_cols=148 Identities=11% Similarity=0.054 Sum_probs=82.0
Q ss_pred CcHHHHHHHHHHh---cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHH
Q 008207 132 LFPIQAMTFDMVL---DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (574)
Q Consensus 132 ~~~~Q~~~i~~il---~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~ 208 (574)
|.|.=.+-|..++ ..+-.++.+|=|.|||.+..+.+...+... +.+++|.+|...-+.++.+.++
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~------------Gi~IlvTAH~~~ts~evF~rv~ 237 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFL------------EIDIVVQAQRKTMCLTLYNRVE 237 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhc------------CCeEEEECCChhhHHHHHHHHH
Confidence 3454444444433 456688889999999987665555433311 2359999999999999888776
Q ss_pred HhhCCCC--------ceEEEEeCCcc---hHHHHHHhc-CCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcC
Q 008207 209 VYGGAVG--------LTSCCLYGGAP---YHAQEFKLK-KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM 276 (574)
Q Consensus 209 ~~~~~~~--------~~~~~~~gg~~---~~~~~~~l~-~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~ 276 (574)
......+ ..+..+.||.. +... .... .+..|.+++-+ .+...-.++++||+|||..+-.
T Consensus 238 ~~le~lg~~~~fp~~~~iv~vkgg~E~I~f~~p-~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~~- 308 (752)
T PHA03333 238 TVVHAYQHKPWFPEEFKIVTLKGTDENLEYISD-PAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVNP- 308 (752)
T ss_pred HHHHHhccccccCCCceEEEeeCCeeEEEEecC-cccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCCH-
Confidence 6554221 11222223221 0000 0000 01223332211 1222333568999999997753
Q ss_pred CcHHHHHHHHHhccCccCceEEEEeccC
Q 008207 277 GFVEDVELILGKVEDANKVQTLLFSATL 304 (574)
Q Consensus 277 ~~~~~~~~il~~l~~~~~~q~ll~SAT~ 304 (574)
+.+..++..+... ..+.+++|.+.
T Consensus 309 ---~~l~aIlP~l~~~-~~k~IiISS~~ 332 (752)
T PHA03333 309 ---GALLSVLPLMAVK-GTKQIHISSPV 332 (752)
T ss_pred ---HHHHHHHHHHccC-CCceEEEeCCC
Confidence 5566666666543 34566677765
No 312
>PRK09183 transposase/IS protein; Provisional
Probab=94.65 E-value=0.25 Score=48.23 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=18.7
Q ss_pred HhcCCcEEEEccCCChhHHHhHH
Q 008207 143 VLDGSDLVGRARTGQGKTLAFVL 165 (574)
Q Consensus 143 il~~~dvi~~a~TGsGKTla~~l 165 (574)
+..+.++++.||+|+|||.....
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIA 121 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHH
Confidence 45688999999999999975443
No 313
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.64 E-value=0.094 Score=51.93 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=16.8
Q ss_pred CCcEEEEccCCChhHHHhHHHH
Q 008207 146 GSDLVGRARTGQGKTLAFVLPI 167 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~lpi 167 (574)
++.++++||||+|||....--+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa 215 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLA 215 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4568899999999998654333
No 314
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.63 E-value=0.14 Score=57.48 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=25.1
Q ss_pred CCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCch
Q 008207 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 260 ~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~ 306 (574)
...+++||||||+|. ......+++.+..++..-++++..|-+.
T Consensus 118 gk~KViIIDEAh~LT----~eAqNALLKtLEEPP~~vrFILaTTe~~ 160 (944)
T PRK14949 118 GRFKVYLIDEVHMLS----RSSFNALLKTLEEPPEHVKFLLATTDPQ 160 (944)
T ss_pred CCcEEEEEechHhcC----HHHHHHHHHHHhccCCCeEEEEECCCch
Confidence 457899999999884 3444555555544333233444444433
No 315
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.63 E-value=0.13 Score=51.55 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=43.0
Q ss_pred HHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHH
Q 008207 122 EKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (574)
Q Consensus 122 ~~l~~~g~~~~~~~Q~~~i~~-il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa 200 (574)
..+...|. +++.|...+.. +..+++++++|+||||||.. +-.++..+.... ..-+++++-.+.||.
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~----------~~~rivtiEd~~El~ 187 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA----------PEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC----------CCceEEEecCCcccc
Confidence 34445555 56777777755 44678999999999999974 344555553221 122578888888874
No 316
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.62 E-value=0.24 Score=56.19 Aligned_cols=21 Identities=19% Similarity=0.069 Sum_probs=16.7
Q ss_pred cEEEEccCCChhHHHhHHHHH
Q 008207 148 DLVGRARTGQGKTLAFVLPIL 168 (574)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil 168 (574)
-+|+.|+.|+|||.+..+.+-
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lAr 59 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILAR 59 (824)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 479999999999987655443
No 317
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.58 E-value=0.37 Score=49.64 Aligned_cols=40 Identities=20% Similarity=0.362 Sum_probs=23.3
Q ss_pred CCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEecc
Q 008207 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (574)
Q Consensus 260 ~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT 303 (574)
...+++||||+|.|... ....+++.+..++..-.++|.+|
T Consensus 118 ~~~kviIIDEa~~l~~~----a~naLLk~lEe~~~~~~fIl~t~ 157 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRH----SFNALLKTLEEPPQHIKFILATT 157 (363)
T ss_pred CCceEEEEEChhhcCHH----HHHHHHHHHhcCCCCeEEEEEcC
Confidence 45789999999988532 23445555544323333444444
No 318
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.55 E-value=0.38 Score=47.71 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=15.7
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
+.++++.||+|||||.++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 558999999999999865
No 319
>PTZ00293 thymidine kinase; Provisional
Probab=94.53 E-value=0.35 Score=45.15 Aligned_cols=38 Identities=16% Similarity=0.021 Sum_probs=25.5
Q ss_pred CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCc
Q 008207 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT 196 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Pt 196 (574)
|.=-++.||++||||.-.+-.+......+. +++++-|.
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~ag~-------------kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYSEK-------------KCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHcCC-------------ceEEEEec
Confidence 444678999999999765554444443332 37888886
No 320
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.47 E-value=0.21 Score=54.09 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=25.5
Q ss_pred CCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCch
Q 008207 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 260 ~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~ 306 (574)
...+++||||||.|.. .....++..+..++..-+++|.+|-+.
T Consensus 118 ~~~KVIIIDEad~Lt~----~A~NaLLKtLEEPp~~tvfIL~Tt~~~ 160 (605)
T PRK05896 118 FKYKVYIIDEAHMLST----SAWNALLKTLEEPPKHVVFIFATTEFQ 160 (605)
T ss_pred CCcEEEEEechHhCCH----HHHHHHHHHHHhCCCcEEEEEECCChH
Confidence 4578999999998742 234455555544333344555555443
No 321
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.46 E-value=0.66 Score=42.78 Aligned_cols=41 Identities=12% Similarity=0.256 Sum_probs=25.6
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEecc
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT 303 (574)
....+++||||+|.|.. .....++..+..+++.-.++|.++
T Consensus 94 ~~~~kviiide~~~l~~----~~~~~Ll~~le~~~~~~~~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNE----AAANALLKTLEEPPPNTLFILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCH----HHHHHHHHHhcCCCCCeEEEEEEC
Confidence 45678999999999853 334555665554333344555554
No 322
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.44 E-value=0.63 Score=52.21 Aligned_cols=27 Identities=11% Similarity=0.224 Sum_probs=17.5
Q ss_pred CCceEEEecCchhhhcCCcHHHHHHHHH
Q 008207 260 SSLKFRVLDEADEMLRMGFVEDVELILG 287 (574)
Q Consensus 260 ~~~~~lVlDEah~~l~~~~~~~~~~il~ 287 (574)
..+.+|||||+|.+...+ .+.+-.++.
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR 894 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFD 894 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHH
Confidence 346789999999987542 333444444
No 323
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.44 E-value=0.078 Score=55.34 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=33.0
Q ss_pred cHHHHHHHHHHhcCCc--EEEEccCCChhHHHhHHHHHHHHhCCC
Q 008207 133 FPIQAMTFDMVLDGSD--LVGRARTGQGKTLAFVLPILESLTNGP 175 (574)
Q Consensus 133 ~~~Q~~~i~~il~~~d--vi~~a~TGsGKTla~~lpil~~l~~~~ 175 (574)
++.|...+..+++... +++.||||||||.+ ++.+++.+....
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~~ 286 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTPE 286 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCCC
Confidence 7888888888776554 88999999999987 667777776553
No 324
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.43 E-value=0.34 Score=50.88 Aligned_cols=38 Identities=24% Similarity=0.233 Sum_probs=24.0
Q ss_pred CceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCc
Q 008207 261 SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (574)
Q Consensus 261 ~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~ 305 (574)
.-.+|+|||+|++. ......++..+.. ..++++.+|-.
T Consensus 92 ~~~vL~IDEi~~l~----~~~q~~LL~~le~---~~iilI~att~ 129 (413)
T PRK13342 92 RRTILFIDEIHRFN----KAQQDALLPHVED---GTITLIGATTE 129 (413)
T ss_pred CceEEEEechhhhC----HHHHHHHHHHhhc---CcEEEEEeCCC
Confidence 45689999999875 2334455555543 34666666643
No 325
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.41 E-value=0.26 Score=51.67 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=24.9
Q ss_pred CceEEEecCchhhhcCC-cHHHHHHHHHhccCccCceEEEEeccCch
Q 008207 261 SLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 261 ~~~~lVlDEah~~l~~~-~~~~~~~il~~l~~~~~~q~ll~SAT~~~ 306 (574)
++++|||||+|.+.... ....+-.++..+... ..++ +++++.++
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~-~~~i-iits~~~p 243 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHEN-GKQI-VLTSDRPP 243 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC-CCCE-EEecCCCH
Confidence 46799999999875432 223344555554332 3454 55665543
No 326
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.39 E-value=0.6 Score=48.69 Aligned_cols=54 Identities=6% Similarity=0.155 Sum_probs=30.0
Q ss_pred CceEEEecCchhhhc-CCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhc
Q 008207 261 SLKFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (574)
Q Consensus 261 ~~~~lVlDEah~~l~-~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~ 316 (574)
.+++||+|=+-++-. .....++..+...... ..-+++++||........++.|.
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p--~e~lLVlda~~Gq~a~~~a~~F~ 236 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQP--DNIIFVMDGSIGQAAEAQAKAFK 236 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCC--cEEEEEeccccChhHHHHHHHHH
Confidence 345666665544311 1133445555544433 34577889998766666666664
No 327
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.38 E-value=0.28 Score=53.38 Aligned_cols=42 Identities=14% Similarity=0.252 Sum_probs=24.9
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccC
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~ 304 (574)
...++++||||+|+|... ..+.+++.+..++..-+++|..|-
T Consensus 122 ~gr~KViIIDEah~Ls~~----AaNALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNH----AFNAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred cCCceEEEEEChHhcCHH----HHHHHHHhhccCCCCceEEEEeCC
Confidence 346789999999988533 344555555443332344444453
No 328
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.29 E-value=0.13 Score=50.51 Aligned_cols=36 Identities=11% Similarity=-0.031 Sum_probs=24.4
Q ss_pred CCCCcHHHHHHHHHHh----cCC-cEEEEccCCChhHHHhH
Q 008207 129 IESLFPIQAMTFDMVL----DGS-DLVGRARTGQGKTLAFV 164 (574)
Q Consensus 129 ~~~~~~~Q~~~i~~il----~~~-dvi~~a~TGsGKTla~~ 164 (574)
+..+++.+.+++..+. .+. .+++.|++|+|||...-
T Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 21 FFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 3355666666666543 233 58899999999998543
No 329
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=94.28 E-value=0.12 Score=58.61 Aligned_cols=71 Identities=20% Similarity=0.184 Sum_probs=54.0
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHH
Q 008207 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (574)
..++|-|.+++.+ ....++|.|..|||||.+...-+...+..... ..-++|+++-|+..|..+.+.+..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i---------~P~~IL~lTFT~kAA~em~~Rl~~ 71 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNV---------APWNILAITFTNKAAREMKERVEK 71 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCC---------CHHHeeeeeccHHHHHHHHHHHHH
Confidence 4689999999975 35689999999999999876666655543211 112599999999999999888876
Q ss_pred hh
Q 008207 210 YG 211 (574)
Q Consensus 210 ~~ 211 (574)
+.
T Consensus 72 ~~ 73 (726)
T TIGR01073 72 LL 73 (726)
T ss_pred Hh
Confidence 54
No 330
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=0.59 Score=48.00 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=26.3
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCch
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~ 306 (574)
....-+||+||+|.|.+..- +.+-.++...... ..++.++.-+...
T Consensus 121 ~~~~~IvvLDEid~L~~~~~-~~LY~L~r~~~~~-~~~v~vi~i~n~~ 166 (366)
T COG1474 121 KGKTVIVILDEVDALVDKDG-EVLYSLLRAPGEN-KVKVSIIAVSNDD 166 (366)
T ss_pred cCCeEEEEEcchhhhccccc-hHHHHHHhhcccc-ceeEEEEEEeccH
Confidence 34456899999999987653 4444444433322 3444444444433
No 331
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.11 E-value=0.37 Score=52.53 Aligned_cols=43 Identities=23% Similarity=0.353 Sum_probs=25.9
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCc
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~ 305 (574)
....+++||||+|.|.. .....+++.+..++..-+++|..|-+
T Consensus 116 ~~~~KVvIIDEah~Lt~----~A~NALLK~LEEpp~~~~fIL~tte~ 158 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTT----AGFNALLKIVEEPPEHLIFIFATTEP 158 (584)
T ss_pred cCCceEEEEECCCcCCH----HHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 35689999999998853 34445555555443333444444544
No 332
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.10 E-value=0.095 Score=52.04 Aligned_cols=63 Identities=16% Similarity=0.116 Sum_probs=44.7
Q ss_pred CCCCCCcHHHHHHHHHHhcCC-cEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHH
Q 008207 127 KGIESLFPIQAMTFDMVLDGS-DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (574)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~~~-dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv 203 (574)
..|..+++-|...+..+...+ +++++|.||||||.. +-.++..+.. .-|++.+--|.||-.+.
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~~-------------~eRvItiEDtaELql~~ 216 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFIDS-------------DERVITIEDTAELQLAH 216 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCCC-------------cccEEEEeehhhhccCC
Confidence 357789999999998877665 999999999999973 1112211211 11689998888876543
No 333
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.06 E-value=0.61 Score=48.84 Aligned_cols=21 Identities=19% Similarity=0.059 Sum_probs=16.0
Q ss_pred cEEEEccCCChhHHHhHHHHH
Q 008207 148 DLVGRARTGQGKTLAFVLPIL 168 (574)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil 168 (574)
-++++|++|+|||.+..--+.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 488999999999986544333
No 334
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.04 E-value=0.39 Score=52.62 Aligned_cols=44 Identities=20% Similarity=0.337 Sum_probs=26.0
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCch
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~ 306 (574)
....+++||||+|.|.. .....+++.+..++..-+++|.+|-+.
T Consensus 117 ~~~~KVvIIdev~~Lt~----~a~naLLk~LEepp~~~~fIl~t~~~~ 160 (576)
T PRK14965 117 RSRYKIFIIDEVHMLST----NAFNALLKTLEEPPPHVKFIFATTEPH 160 (576)
T ss_pred cCCceEEEEEChhhCCH----HHHHHHHHHHHcCCCCeEEEEEeCChh
Confidence 45689999999998753 334455555544333334445555443
No 335
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=93.98 E-value=0.14 Score=57.43 Aligned_cols=83 Identities=17% Similarity=0.247 Sum_probs=66.8
Q ss_pred hhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC--------CCccccccCCHHHHHHHHHHHhCCCccEEEEecc-ccc
Q 008207 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV-AAR 421 (574)
Q Consensus 351 ~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~--------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~-~~~ 421 (574)
..+..++.....+.+++|.++|..-|...+..+. .+..+||+++..+|..++....+|+..|+|+|.. +..
T Consensus 298 va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~ 377 (681)
T PRK10917 298 VAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD 377 (681)
T ss_pred HHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc
Confidence 3444455555577899999999998887766554 4678999999999999999999999999999964 445
Q ss_pred cCCCCCCcEEEE
Q 008207 422 GLDINDVQLIIQ 433 (574)
Q Consensus 422 Gldi~~v~~VI~ 433 (574)
.+.+.++.+||.
T Consensus 378 ~v~~~~l~lvVI 389 (681)
T PRK10917 378 DVEFHNLGLVII 389 (681)
T ss_pred cchhcccceEEE
Confidence 678889999884
No 336
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.98 E-value=0.72 Score=49.85 Aligned_cols=19 Identities=26% Similarity=0.092 Sum_probs=15.2
Q ss_pred EEEEccCCChhHHHhHHHH
Q 008207 149 LVGRARTGQGKTLAFVLPI 167 (574)
Q Consensus 149 vi~~a~TGsGKTla~~lpi 167 (574)
+|+.||.|+|||..+.+.+
T Consensus 41 ~Lf~Gp~GvGKTTlAr~lA 59 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRLLA 59 (546)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999998654433
No 337
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.88 E-value=0.46 Score=48.55 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=17.6
Q ss_pred cEEEEccCCChhHHHhHHHHHHHHhC
Q 008207 148 DLVGRARTGQGKTLAFVLPILESLTN 173 (574)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil~~l~~ 173 (574)
-+++.||.|+|||.... .+...+..
T Consensus 47 a~L~~G~~G~GKttlA~-~lA~~Llc 71 (351)
T PRK09112 47 ALLFEGPEGIGKATLAF-HLANHILS 71 (351)
T ss_pred eEeeECCCCCCHHHHHH-HHHHHHcC
Confidence 48999999999997543 33444443
No 338
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.81 E-value=0.3 Score=45.84 Aligned_cols=16 Identities=25% Similarity=0.214 Sum_probs=14.1
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
++|+.||+|+|||..+
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 6999999999999743
No 339
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.75 E-value=0.69 Score=41.24 Aligned_cols=52 Identities=19% Similarity=0.286 Sum_probs=36.0
Q ss_pred CCCceEEEecCchhhhcCCcH--HHHHHHHHhccCccCceEEEEeccCchhHHHHH
Q 008207 259 LSSLKFRVLDEADEMLRMGFV--EDVELILGKVEDANKVQTLLFSATLPSWVKHIS 312 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~--~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~ 312 (574)
...+++||+||+=..++.++. +++..+++..|. ..-+|+.+-..|+++..++
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~--~~evIlTGr~~p~~l~e~A 146 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPE--DLELVLTGRNAPKELIEAA 146 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCC--CCEEEEECCCCCHHHHHhC
Confidence 456899999999998888743 455556665554 4556666666777766554
No 340
>PF13173 AAA_14: AAA domain
Probab=93.72 E-value=0.91 Score=38.89 Aligned_cols=40 Identities=10% Similarity=0.316 Sum_probs=25.3
Q ss_pred CceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCch
Q 008207 261 SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 261 ~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~ 306 (574)
.-.+|+|||+|++- ++...+..+...-+ +.+++ +|++...
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~~---~~~ii-~tgS~~~ 100 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNGP---NIKII-LTGSSSS 100 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhcc---CceEE-EEccchH
Confidence 45689999999984 45666666666442 34444 4555433
No 341
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.60 E-value=0.39 Score=44.11 Aligned_cols=145 Identities=17% Similarity=0.168 Sum_probs=72.4
Q ss_pred hcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeC
Q 008207 144 LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223 (574)
Q Consensus 144 l~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~g 223 (574)
.....+++..++|.|||.+++--++..+..+. +++|+.=.+.-. -+.+...+....++.......
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~-------------~V~ivQFlKg~~--~~GE~~~l~~l~~v~~~~~g~ 84 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGK-------------KVGVVQFIKGAW--STGERNLLEFGGGVEFHVMGT 84 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCC-------------eEEEEEEecCCC--ccCHHHHHhcCCCcEEEECCC
Confidence 35678999999999999987777776665543 477775332210 011222222111233222111
Q ss_pred CcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHH--HHHHHHHhccCccCceEEEEe
Q 008207 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVE--DVELILGKVEDANKVQTLLFS 301 (574)
Q Consensus 224 g~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~--~~~~il~~l~~~~~~q~ll~S 301 (574)
+..... ...+--.......+..... .+.-..+++||+||+=..++.|+.+ ++..++...|. -.-+++|
T Consensus 85 ~~~~~~------~~~~e~~~~~~~~~~~a~~-~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~---~~evVlT 154 (191)
T PRK05986 85 GFTWET------QDRERDIAAAREGWEEAKR-MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPG---MQHVVIT 154 (191)
T ss_pred CCcccC------CCcHHHHHHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCC---CCEEEEE
Confidence 111100 0000000011112222211 2223568999999999999988553 44455554443 3445555
Q ss_pred cc-CchhHHHHHH
Q 008207 302 AT-LPSWVKHIST 313 (574)
Q Consensus 302 AT-~~~~~~~~~~ 313 (574)
.- .|+++..++.
T Consensus 155 GR~~p~~Lie~AD 167 (191)
T PRK05986 155 GRGAPRELIEAAD 167 (191)
T ss_pred CCCCCHHHHHhCc
Confidence 54 5666655543
No 342
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.57 E-value=1.4 Score=39.89 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=29.9
Q ss_pred CCceEEEecCchhhh-cCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhc
Q 008207 260 SSLKFRVLDEADEML-RMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (574)
Q Consensus 260 ~~~~~lVlDEah~~l-~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~ 316 (574)
...+++|+|....+. +......+..+..... +..-++.++|+.+.........+.
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~--~~~~~lVv~~~~~~~~~~~~~~~~ 136 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVK--PDEVLLVVDAMTGQDAVNQAKAFN 136 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcC--CCeEEEEEECCCChHHHHHHHHHH
Confidence 356788999888652 1122333333333322 244566777876665555555554
No 343
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.52 E-value=0.39 Score=52.94 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=25.0
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEecc
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT 303 (574)
....+++||||||.|.. .....+++.+..++..-+++|.++
T Consensus 119 ~~~~KViIIDEad~Lt~----~a~naLLK~LEePp~~tvfIL~t~ 159 (620)
T PRK14948 119 QARWKVYVIDECHMLST----AAFNALLKTLEEPPPRVVFVLATT 159 (620)
T ss_pred cCCceEEEEECccccCH----HHHHHHHHHHhcCCcCeEEEEEeC
Confidence 34678999999998853 345566666655333333444444
No 344
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.46 E-value=0.33 Score=48.43 Aligned_cols=67 Identities=24% Similarity=0.321 Sum_probs=42.3
Q ss_pred HHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHH
Q 008207 121 REKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTREL 199 (574)
Q Consensus 121 ~~~l~~~g~~~~~~~Q~~~i~~-il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreL 199 (574)
+..|.+.|. +++-|...+.. +..+++++++|+||||||.. +-.++..+.... ..-+++++-.+.|+
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~----------~~~ri~tiEd~~El 174 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKND----------PTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccC----------CCceEEEECCchhh
Confidence 444555554 44555555544 45678999999999999975 344455543311 12258888888887
Q ss_pred H
Q 008207 200 A 200 (574)
Q Consensus 200 a 200 (574)
.
T Consensus 175 ~ 175 (299)
T TIGR02782 175 Q 175 (299)
T ss_pred c
Confidence 4
No 345
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=93.45 E-value=0.8 Score=49.76 Aligned_cols=134 Identities=17% Similarity=0.196 Sum_probs=81.3
Q ss_pred CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCC--CceEEEEeCC
Q 008207 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV--GLTSCCLYGG 224 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~--~~~~~~~~gg 224 (574)
+-.++..|==.|||.... +++..+... -.+.++++++|.+..+..+++++..+.... +-.+..+.|
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s----------~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG- 322 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALAT----------FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG- 322 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHh----------CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-
Confidence 567888888899998655 555544422 124469999999999999999887654311 111222222
Q ss_pred cchHHHHHHhcCC--CcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEec
Q 008207 225 APYHAQEFKLKKG--IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302 (574)
Q Consensus 225 ~~~~~~~~~l~~~--~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SA 302 (574)
..+ ...+.++ ..|.++|- -..+...=.+++++|||||+.+-+ +.+..++..+... +.++|++|.
T Consensus 323 e~I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~----~al~~ilp~l~~~-n~k~I~ISS 388 (738)
T PHA03368 323 ETI---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRP----DAVQTIMGFLNQT-NCKIIFVSS 388 (738)
T ss_pred cEE---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCH----HHHHHHHHHHhcc-CccEEEEec
Confidence 111 0011112 24444421 112223344789999999998853 5566676666554 678999998
Q ss_pred cCch
Q 008207 303 TLPS 306 (574)
Q Consensus 303 T~~~ 306 (574)
|-+.
T Consensus 389 ~Ns~ 392 (738)
T PHA03368 389 TNTG 392 (738)
T ss_pred CCCC
Confidence 8654
No 346
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.43 E-value=1 Score=49.63 Aligned_cols=41 Identities=15% Similarity=0.333 Sum_probs=26.9
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEecc
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT 303 (574)
....+++||||||.|.. .....+++.+..++..-+++|.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~----~a~naLLK~LEepp~~tifIL~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQ----AAFNAFLKTLEEPPSYAIFILATT 159 (614)
T ss_pred cCCcEEEEEECcccCCH----HHHHHHHHHHhCCCCCeEEEEEeC
Confidence 56789999999998853 345556666655434345556665
No 347
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.38 E-value=0.46 Score=53.25 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=27.6
Q ss_pred CceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHH
Q 008207 261 SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313 (574)
Q Consensus 261 ~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~ 313 (574)
...+|||||+|++.. .....++..+.. .++++.+||-++....+..
T Consensus 109 ~~~IL~IDEIh~Ln~----~qQdaLL~~lE~---g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 109 KRTILFIDEVHRFNK----AQQDALLPWVEN---GTITLIGATTENPYFEVNK 154 (725)
T ss_pred CceEEEEeChhhCCH----HHHHHHHHHhcC---ceEEEEEecCCChHhhhhh
Confidence 456899999998742 223344444433 4677778876554433333
No 348
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.36 E-value=0.17 Score=47.30 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=15.6
Q ss_pred CcEEEEccCCChhHHHhH
Q 008207 147 SDLVGRARTGQGKTLAFV 164 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~~ 164 (574)
.++|+.||+|+|||.+..
T Consensus 49 P~liisGpPG~GKTTsi~ 66 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSIL 66 (333)
T ss_pred CceEeeCCCCCchhhHHH
Confidence 579999999999998743
No 349
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=93.35 E-value=0.46 Score=51.75 Aligned_cols=43 Identities=16% Similarity=0.286 Sum_probs=27.9
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCc
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~ 305 (574)
....+++||||+|.|.. .....+++.+..++..-+++|.+|-+
T Consensus 117 ~~~~KVvIIDEa~~Ls~----~a~naLLK~LEepp~~~vfI~~tte~ 159 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSN----SAFNALLKTIEEPPPYIVFIFATTEV 159 (563)
T ss_pred cCCCEEEEEEChhhcCH----HHHHHHHHhhccCCCCEEEEEecCCh
Confidence 45789999999998853 34556666666544444555555533
No 350
>PRK04195 replication factor C large subunit; Provisional
Probab=93.35 E-value=0.56 Score=50.36 Aligned_cols=18 Identities=28% Similarity=0.183 Sum_probs=15.5
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
.+.+++.||+|+|||...
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999754
No 351
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.30 E-value=0.21 Score=54.90 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=16.4
Q ss_pred CcEEEEccCCChhHHHhHHHH
Q 008207 147 SDLVGRARTGQGKTLAFVLPI 167 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpi 167 (574)
+.+|++|+.|+|||....+.+
T Consensus 39 Ha~Lf~GP~GvGKTTlAriLA 59 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARILA 59 (709)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 358999999999998654433
No 352
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.27 E-value=0.33 Score=49.15 Aligned_cols=37 Identities=24% Similarity=0.281 Sum_probs=24.8
Q ss_pred eEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCch
Q 008207 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 263 ~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~ 306 (574)
-+|+|||+|++- ..+-..++.++. +-.+++.-||--+
T Consensus 106 tiLflDEIHRfn----K~QQD~lLp~vE---~G~iilIGATTEN 142 (436)
T COG2256 106 TILFLDEIHRFN----KAQQDALLPHVE---NGTIILIGATTEN 142 (436)
T ss_pred eEEEEehhhhcC----hhhhhhhhhhhc---CCeEEEEeccCCC
Confidence 378999999984 334455555554 3467888888543
No 353
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.22 E-value=0.051 Score=47.41 Aligned_cols=15 Identities=27% Similarity=0.282 Sum_probs=13.4
Q ss_pred cEEEEccCCChhHHH
Q 008207 148 DLVGRARTGQGKTLA 162 (574)
Q Consensus 148 dvi~~a~TGsGKTla 162 (574)
++++.|++|+|||..
T Consensus 1 ~vlL~G~~G~GKt~l 15 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTL 15 (139)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred CEEEECCCCCCHHHH
Confidence 489999999999975
No 354
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.19 E-value=0.12 Score=55.42 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=34.7
Q ss_pred CCCcHHHHHHHHHHh----cCCcEEEEccCCChhHHHhHHHHHHHHhC
Q 008207 130 ESLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTN 173 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il----~~~dvi~~a~TGsGKTla~~lpil~~l~~ 173 (574)
.+|+.||...+..+. .|+-.|.-+|||+|||+..+-..+.+|..
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHH
Confidence 378999988776544 79999999999999999766666666543
No 355
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.15 E-value=0.74 Score=49.84 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=19.8
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCc
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~ 292 (574)
....+++||||+|+|.. .....+++.+..+
T Consensus 117 ~~~~kVvIIDEad~ls~----~a~naLLK~LEep 146 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSK----SAFNAMLKTLEEP 146 (527)
T ss_pred cCCceEEEEcCcccCCH----HHHHHHHHHHhCC
Confidence 35678999999998853 2344555555443
No 356
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.15 E-value=0.21 Score=45.77 Aligned_cols=49 Identities=27% Similarity=0.408 Sum_probs=28.9
Q ss_pred HHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHH
Q 008207 141 DMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (574)
Q Consensus 141 ~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv 203 (574)
.++-.++++++.|++|+|||..+..-+-+.+..+. .++++ +..+|...+
T Consensus 42 ~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~-------------~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTHLAVAIANEAIRKGY-------------SVLFI-TASDLLDEL 90 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHHHHHHHHHHHHHTT---------------EEEE-EHHHHHHHH
T ss_pred CCcccCeEEEEEhhHhHHHHHHHHHHHHHhccCCc-------------ceeEe-ecCceeccc
Confidence 33456889999999999999865444444444332 25554 566776654
No 357
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.14 E-value=0.89 Score=43.41 Aligned_cols=52 Identities=17% Similarity=0.244 Sum_probs=31.6
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (574)
.|..+++.|++|+|||......+.+.+..+. .+++++- .+.+.++.+....+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~-------------~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGD-------------PVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCC-------------eEEEEEc-cCCHHHHHHHHHHh
Confidence 4678999999999999755444444443321 3666664 34445555444443
No 358
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.12 E-value=0.24 Score=54.84 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=27.3
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCch
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~ 306 (574)
....+++||||||.|.. .....++..+..++..-+++|.+|-+.
T Consensus 116 ~g~~KV~IIDEa~~LT~----~A~NALLKtLEEPP~~tifILaTte~~ 159 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSK----SAFNALLKTLEEPPKHVIFILATTEVH 159 (725)
T ss_pred cCCCEEEEEEChhhCCH----HHHHHHHHHhhcCCCceEEEEEcCChh
Confidence 45788999999998753 345556666655433334455555443
No 359
>PRK10867 signal recognition particle protein; Provisional
Probab=93.11 E-value=0.81 Score=47.97 Aligned_cols=21 Identities=19% Similarity=-0.007 Sum_probs=15.8
Q ss_pred cEEEEccCCChhHHHhHHHHH
Q 008207 148 DLVGRARTGQGKTLAFVLPIL 168 (574)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil 168 (574)
-++++|++|+|||.+..--+.
T Consensus 102 vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 478999999999986544333
No 360
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.95 E-value=0.63 Score=49.30 Aligned_cols=53 Identities=23% Similarity=0.223 Sum_probs=34.5
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhh
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~ 211 (574)
.|.-+++.|++|+|||...+..+.+....+ .+++|++- .+-..|+.....+++
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g-------------~~vlYvs~-Ees~~qi~~ra~rlg 131 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAG-------------GKVLYVSG-EESASQIKLRAERLG 131 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcC-------------CeEEEEEc-cccHHHHHHHHHHcC
Confidence 356789999999999986444444333221 24788874 466677776666554
No 361
>PRK08939 primosomal protein DnaI; Reviewed
Probab=92.94 E-value=0.67 Score=46.39 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=18.8
Q ss_pred CCcEEEEccCCChhHHHhHHHHHHHHh
Q 008207 146 GSDLVGRARTGQGKTLAFVLPILESLT 172 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~lpil~~l~ 172 (574)
++.+++.|++|+|||.... .+.+.+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l~ 181 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANELA 181 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 5679999999999998643 3334443
No 362
>PRK05580 primosome assembly protein PriA; Validated
Probab=92.92 E-value=0.37 Score=53.95 Aligned_cols=76 Identities=16% Similarity=0.236 Sum_probs=61.9
Q ss_pred hhcCCCeEEEEecChHHHHHHHHhCC-----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEE
Q 008207 359 CYSSGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ 433 (574)
Q Consensus 359 ~~~~~~~~lVF~~t~~~~~~l~~~l~-----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~ 433 (574)
....+.++||.++++.-+..+.+.|. .+..+||+++..+|...+.+...|..+|+|+|..+.. +.+.++.+||.
T Consensus 186 ~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVv 264 (679)
T PRK05580 186 VLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIV 264 (679)
T ss_pred HHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEE
Confidence 34457799999999999887777665 4678999999999999999999999999999974432 56778888885
Q ss_pred eC
Q 008207 434 CE 435 (574)
Q Consensus 434 ~d 435 (574)
-+
T Consensus 265 DE 266 (679)
T PRK05580 265 DE 266 (679)
T ss_pred EC
Confidence 44
No 363
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.87 E-value=0.51 Score=42.63 Aligned_cols=53 Identities=17% Similarity=0.273 Sum_probs=34.7
Q ss_pred CCCceEEEecCchhhhcCCcHH--HHHHHHHhccCccCceEEEEeccCchhHHHHHH
Q 008207 259 LSSLKFRVLDEADEMLRMGFVE--DVELILGKVEDANKVQTLLFSATLPSWVKHIST 313 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~--~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~ 313 (574)
-..+++||+||+=..++.|+.+ ++..++...|. ..-+|+..-..|+++..++.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~--~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPG--HQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCC--CCEEEEECCCCCHHHHHhCc
Confidence 3568999999999998888543 45555555444 44555555556776655543
No 364
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=92.85 E-value=1.5 Score=45.11 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=25.1
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCc
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~ 305 (574)
....+++||||+|.|- ......+++.+..++...++++.+.-+
T Consensus 139 ~~~~kVviIDead~m~----~~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 139 EGGWRVVIVDTADEMN----ANAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred cCCCEEEEEechHhcC----HHHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 4568899999999884 333445555554433333444444433
No 365
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.79 E-value=0.13 Score=52.23 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=19.1
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhC
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTN 173 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~ 173 (574)
...++|+.+|||||||+.. --|.++.+
T Consensus 225 eKSNvLllGPtGsGKTlla--qTLAr~ld 251 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLA--QTLARVLD 251 (564)
T ss_pred ecccEEEECCCCCchhHHH--HHHHHHhC
Confidence 4567999999999999843 23344444
No 366
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.77 E-value=0.55 Score=50.20 Aligned_cols=41 Identities=20% Similarity=0.345 Sum_probs=25.3
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEecc
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT 303 (574)
....+++||||||.|.. .....++..+..++..-+++|.+|
T Consensus 117 ~~~~KVvIIDEad~Lt~----~a~naLLk~LEepp~~~v~Il~tt 157 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTK----EAFNALLKTLEEPPPRTIFILCTT 157 (486)
T ss_pred cCCeeEEEEEChhhcCH----HHHHHHHHHHhcCCCCeEEEEEEC
Confidence 45678999999998753 234455555555433445555444
No 367
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=92.69 E-value=0.96 Score=47.95 Aligned_cols=147 Identities=14% Similarity=0.043 Sum_probs=83.9
Q ss_pred CCCcHHHHHHHHHHhc------C----CcEEEEccCCChhHHHhH-HHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHH
Q 008207 130 ESLFPIQAMTFDMVLD------G----SDLVGRARTGQGKTLAFV-LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE 198 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il~------~----~dvi~~a~TGsGKTla~~-lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptre 198 (574)
..+-|||.-++-.++. | +..++.-|-+-|||.... +.....+.... .+-+..|++|+.+
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~----------~~~~~~i~A~s~~ 129 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWR----------SGAGIYILAPSVE 129 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhh----------cCCcEEEEeccHH
Confidence 3677999999988872 1 347788888889996433 44444443331 2335899999999
Q ss_pred HHHHHHHHHHHhhCCCC-ceEEEEeCCcchHHHHHHhcCCCcEEEEChH---HHHHhHhc--CCccCCCceEEEecCchh
Q 008207 199 LAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG---RIKDHIER--GNIDLSSLKFRVLDEADE 272 (574)
Q Consensus 199 La~Qv~~~~~~~~~~~~-~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~---~l~~~l~~--~~~~l~~~~~lVlDEah~ 272 (574)
-+.+....++....... ++ .......+-...+.+ ..+..+.. +..+-.+..+.|+||.|.
T Consensus 130 qa~~~F~~ar~mv~~~~~l~--------------~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~ 195 (546)
T COG4626 130 QAANSFNPARDMVKRDDDLR--------------DLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHL 195 (546)
T ss_pred HHHHhhHHHHHHHHhCcchh--------------hhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhh
Confidence 99988887764322111 11 111111222222222 22222222 334455678999999997
Q ss_pred hhcCCcHHHHHHHHHhccCccCceEEEEec
Q 008207 273 MLRMGFVEDVELILGKVEDANKVQTLLFSA 302 (574)
Q Consensus 273 ~l~~~~~~~~~~il~~l~~~~~~q~ll~SA 302 (574)
..+.+ ..+..+..-+...++.+++..|-
T Consensus 196 f~~~~--~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 196 FGKQE--DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred hcCHH--HHHHHHHhhhccCcCceEEEEec
Confidence 75442 45555555555444556666554
No 368
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.67 E-value=0.52 Score=48.61 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=17.7
Q ss_pred CcEEEEccCCChhHHHhHHHHHHHH
Q 008207 147 SDLVGRARTGQGKTLAFVLPILESL 171 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l 171 (574)
.++++.||+|+|||.+. -.++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 57999999999999763 3344433
No 369
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.64 E-value=0.49 Score=51.42 Aligned_cols=49 Identities=14% Similarity=0.157 Sum_probs=28.9
Q ss_pred CCCceEEEecCchhhhcCC-cHHHHHHHHHhccCccCceEEEEeccCchhH
Q 008207 259 LSSLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATLPSWV 308 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~-~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~ 308 (574)
+.++++||||++|.+.... ....+-.++..+... ..++|+.|-..|..+
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~-gk~IIITSd~~P~eL 424 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNA-NKQIVLSSDRPPKQL 424 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhc-CCCEEEecCCChHhh
Confidence 4457899999999875432 234455666665442 345665444444443
No 370
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.58 E-value=0.24 Score=47.71 Aligned_cols=53 Identities=17% Similarity=0.240 Sum_probs=38.5
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhh
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~ 211 (574)
.|..+++.|++|+|||...+-.+.+.+..+. .+++++ +.+-..|+.+.+..++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge-------------~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGE-------------PGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC-------------cEEEEE-eeCCHHHHHHHHHHhC
Confidence 4677999999999999876666666664433 378887 4567777777776654
No 371
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=92.51 E-value=0.27 Score=54.72 Aligned_cols=82 Identities=18% Similarity=0.269 Sum_probs=65.8
Q ss_pred hhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC--------CCccccccCCHHHHHHHHHHHhCCCccEEEEeccc-ccc
Q 008207 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA-ARG 422 (574)
Q Consensus 352 ~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~--------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~-~~G 422 (574)
.+..++.....+.+++|.++|..-|...+..+. .+..+||+++..+|...++...+|+..|+|+|..+ ...
T Consensus 273 a~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~ 352 (630)
T TIGR00643 273 AALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK 352 (630)
T ss_pred HHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc
Confidence 344455555577899999999998887765543 46789999999999999999999999999999654 456
Q ss_pred CCCCCCcEEEE
Q 008207 423 LDINDVQLIIQ 433 (574)
Q Consensus 423 ldi~~v~~VI~ 433 (574)
+.+.++.+||.
T Consensus 353 ~~~~~l~lvVI 363 (630)
T TIGR00643 353 VEFKRLALVII 363 (630)
T ss_pred ccccccceEEE
Confidence 78888998884
No 372
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.39 E-value=0.4 Score=51.65 Aligned_cols=75 Identities=17% Similarity=0.296 Sum_probs=60.8
Q ss_pred hcCCCeEEEEecChHHHHHHHHhCC-----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEe
Q 008207 360 YSSGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQC 434 (574)
Q Consensus 360 ~~~~~~~lVF~~t~~~~~~l~~~l~-----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~ 434 (574)
...++++||.+++..-+..+...|. .+..+||+++..+|.+.+....+|+.+|+|+|..+.. +.++++.+||.-
T Consensus 22 l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVD 100 (505)
T TIGR00595 22 LALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVD 100 (505)
T ss_pred HHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEE
Confidence 3467799999999988877776664 5778999999999999999999999999999975443 467788888854
Q ss_pred C
Q 008207 435 E 435 (574)
Q Consensus 435 d 435 (574)
+
T Consensus 101 E 101 (505)
T TIGR00595 101 E 101 (505)
T ss_pred C
Confidence 3
No 373
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.38 E-value=0.22 Score=50.54 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=30.6
Q ss_pred HHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHH
Q 008207 142 MVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (574)
Q Consensus 142 ~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa 200 (574)
.+..+++++++|+||||||.. +-.++..+... -+++.+-.+.||.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl-l~aLl~~i~~~-------------~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM-SKTLISAIPPQ-------------ERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH-HHHHHcccCCC-------------CCEEEECCCcccc
Confidence 345789999999999999974 33344333221 2477777887774
No 374
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.38 E-value=1.3 Score=47.69 Aligned_cols=42 Identities=17% Similarity=0.355 Sum_probs=24.5
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccC
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~ 304 (574)
....+++||||||+|.. .....+++.+..++..-+++|.+|-
T Consensus 115 ~~~~KVvIIDEad~Lt~----~A~NALLK~LEEpp~~t~FIL~ttd 156 (535)
T PRK08451 115 MARFKIFIIDEVHMLTK----EAFNALLKTLEEPPSYVKFILATTD 156 (535)
T ss_pred cCCeEEEEEECcccCCH----HHHHHHHHHHhhcCCceEEEEEECC
Confidence 45689999999998853 3344455555443222334444453
No 375
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=92.36 E-value=1.6 Score=43.93 Aligned_cols=17 Identities=35% Similarity=0.385 Sum_probs=14.5
Q ss_pred cEEEEccCCChhHHHhH
Q 008207 148 DLVGRARTGQGKTLAFV 164 (574)
Q Consensus 148 dvi~~a~TGsGKTla~~ 164 (574)
.+++.|++|+|||.+.-
T Consensus 40 ~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 40 HLLFAGPPGTGKTTAAL 56 (319)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 59999999999997643
No 376
>PRK05973 replicative DNA helicase; Provisional
Probab=92.36 E-value=0.44 Score=45.57 Aligned_cols=66 Identities=21% Similarity=0.294 Sum_probs=42.1
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHh
Q 008207 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (574)
Q Consensus 131 ~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (574)
.+||.. +...-+..|.-+++.|++|+|||...+-.+.+.+.++. +++|++-- +-..|+.+.+..+
T Consensus 50 ~~~p~~-~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge-------------~vlyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 50 ATTPAE-ELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGR-------------TGVFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred CCCCHH-HhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC-------------eEEEEEEe-CCHHHHHHHHHHc
Confidence 445522 23344556778999999999999876666665554432 36777533 4466777777665
Q ss_pred h
Q 008207 211 G 211 (574)
Q Consensus 211 ~ 211 (574)
+
T Consensus 115 g 115 (237)
T PRK05973 115 G 115 (237)
T ss_pred C
Confidence 3
No 377
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.36 E-value=2.2 Score=42.95 Aligned_cols=57 Identities=18% Similarity=0.245 Sum_probs=32.4
Q ss_pred CCceEEEecCchhhh-cCCcHHHHHHHHHhc----cCccCceEEEEeccCchhHHHHHHHhc
Q 008207 260 SSLKFRVLDEADEML-RMGFVEDVELILGKV----EDANKVQTLLFSATLPSWVKHISTKFL 316 (574)
Q Consensus 260 ~~~~~lVlDEah~~l-~~~~~~~~~~il~~l----~~~~~~q~ll~SAT~~~~~~~~~~~~~ 316 (574)
.++++||+|=+-++- +....+++..+...+ +..+.--++.++||........+..|.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH 256 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH
Confidence 456788888776653 222334555555432 233344578899997665444455554
No 378
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=92.26 E-value=0.16 Score=55.23 Aligned_cols=159 Identities=16% Similarity=0.092 Sum_probs=92.5
Q ss_pred CCCCCcHHHHHHHHHHhcCC----------cEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcH
Q 008207 128 GIESLFPIQAMTFDMVLDGS----------DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197 (574)
Q Consensus 128 g~~~~~~~Q~~~i~~il~~~----------dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr 197 (574)
....+...|.+++-.+.+-+ -.++-...|-||--+..-.|++..+++++ ++|++.-+.
T Consensus 261 ~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRK------------rAlW~SVSs 328 (1300)
T KOG1513|consen 261 DSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRK------------RALWFSVSS 328 (1300)
T ss_pred cccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccc------------eeEEEEecc
Confidence 34467778888886654322 24555555666654444456676666654 589999998
Q ss_pred HHHHHHHHHHHHhhCCCCceEEEEeCCcchHHH--HHHhcCCCcEEEEChHHHHHhHhcCCc-----------c-CCC-c
Q 008207 198 ELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ--EFKLKKGIDVVIGTPGRIKDHIERGNI-----------D-LSS-L 262 (574)
Q Consensus 198 eLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~--~~~l~~~~~IlV~Tp~~l~~~l~~~~~-----------~-l~~-~ 262 (574)
.|-....+.+..++. +++.|..+.-- .|..- ...-.-.-.|+++|+..|+-.-....- + -.+ =
T Consensus 329 DLKfDAERDL~DigA-~~I~V~alnK~-KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~fe 406 (1300)
T KOG1513|consen 329 DLKFDAERDLRDIGA-TGIAVHALNKF-KYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFE 406 (1300)
T ss_pred ccccchhhchhhcCC-CCccceehhhc-ccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccc
Confidence 888887778877764 34666544210 00000 000111246999999887654331110 0 011 2
Q ss_pred eEEEecCchhhhcCC---------cHHHHHHHHHhccCccCceEEEEecc
Q 008207 263 KFRVLDEADEMLRMG---------FVEDVELILGKVEDANKVQTLLFSAT 303 (574)
Q Consensus 263 ~~lVlDEah~~l~~~---------~~~~~~~il~~l~~~~~~q~ll~SAT 303 (574)
.+||+||||+--+.. -...+..+-+.+| +.+++.-|||
T Consensus 407 GvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP---~ARVVYASAT 453 (1300)
T KOG1513|consen 407 GVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP---NARVVYASAT 453 (1300)
T ss_pred eeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCC---CceEEEeecc
Confidence 589999999965411 3344555555665 4678899999
No 379
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=92.24 E-value=0.17 Score=54.16 Aligned_cols=50 Identities=30% Similarity=0.347 Sum_probs=38.9
Q ss_pred CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhh
Q 008207 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~ 211 (574)
.++++.|+||||||..+++|.+-. ... -++|+=|--||.......++..+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~--~~~-------------s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN--YPG-------------SMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh--ccC-------------CEEEEECCCcHHHHHHHHHHHCC
Confidence 479999999999999999997632 221 28999999999887777665543
No 380
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=92.22 E-value=0.12 Score=53.86 Aligned_cols=48 Identities=31% Similarity=0.321 Sum_probs=36.6
Q ss_pred cEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHh
Q 008207 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (574)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (574)
++++.|+||||||.++++|-+-... ..++|+=|.-|+........+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~~---------------~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTWP---------------GSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcCC---------------CCEEEEccchhHHHHHHHHHHHc
Confidence 5789999999999999988764321 13899999999987766655543
No 381
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=92.19 E-value=1.8 Score=43.48 Aligned_cols=59 Identities=19% Similarity=0.287 Sum_probs=34.2
Q ss_pred cEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEecc
Q 008207 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (574)
Q Consensus 239 ~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT 303 (574)
.|-|-....+.+.+....+ ....+++|||+||.|- ......+++.+..+++.. ++|.++
T Consensus 103 ~I~id~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~----~~aaNaLLK~LEEPp~~~-fILi~~ 161 (314)
T PRK07399 103 QIRLEQIREIKRFLSRPPL-EAPRKVVVIEDAETMN----EAAANALLKTLEEPGNGT-LILIAP 161 (314)
T ss_pred cCcHHHHHHHHHHHccCcc-cCCceEEEEEchhhcC----HHHHHHHHHHHhCCCCCe-EEEEEC
Confidence 3444444445555554443 3578999999999885 334555666665544443 444444
No 382
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=92.16 E-value=2.8 Score=40.13 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=34.2
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhh
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~ 211 (574)
.|.-+++.|++|+|||......+...+.++. +++++.-- +-..++.+.+..++
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~-------------~~~y~~~e-~~~~~~~~~~~~~g 76 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGK-------------KVYVITTE-NTSKSYLKQMESVK 76 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCC-------------EEEEEEcC-CCHHHHHHHHHHCC
Confidence 3567899999999999866555555554332 36666543 44456666666554
No 383
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.15 E-value=1.4 Score=42.38 Aligned_cols=30 Identities=20% Similarity=0.070 Sum_probs=21.6
Q ss_pred hcCCcEEEEccCCChhHHHhHHHHHHHHhC
Q 008207 144 LDGSDLVGRARTGQGKTLAFVLPILESLTN 173 (574)
Q Consensus 144 l~~~dvi~~a~TGsGKTla~~lpil~~l~~ 173 (574)
..|.-+++.|++|+|||...+--+++.+..
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~ 40 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKK 40 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 356778999999999997655445555443
No 384
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.11 E-value=0.42 Score=48.38 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=29.9
Q ss_pred HhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHH
Q 008207 143 VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (574)
Q Consensus 143 il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~ 201 (574)
+..+++++++|+||||||.. +-.++..+... -+++++--+.||..
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~ip~~-------------~ri~tiEd~~El~l 201 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREIPAI-------------ERLITVEDAREIVL 201 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhCCCC-------------CeEEEecCCCcccc
Confidence 44789999999999999974 33444444322 24677666666543
No 385
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.04 E-value=1.1 Score=46.20 Aligned_cols=53 Identities=23% Similarity=0.233 Sum_probs=33.4
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhh
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~ 211 (574)
.|.-+++.|++|+|||...+..+.+....+ .+++|+.-. +-..|+.....+++
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g-------------~~VlYvs~E-Es~~qi~~Ra~rlg 133 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRG-------------GKVLYVSGE-ESPEQIKLRADRLG 133 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcC-------------CeEEEEECC-cCHHHHHHHHHHcC
Confidence 356789999999999986544443333221 147888654 45567666655553
No 386
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=92.04 E-value=0.35 Score=55.67 Aligned_cols=81 Identities=17% Similarity=0.232 Sum_probs=65.1
Q ss_pred hhHHHHhhcCCCeEEEEecChHHHHHHHHhCC--------CCccccccCCHHHHHHHHHHHhCCCccEEEEec-cccccC
Q 008207 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN-VAARGL 423 (574)
Q Consensus 353 l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~--------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd-~~~~Gl 423 (574)
+..++.....+.+++|.++|..-|...+..+. .+..++|..+..++..+++.+.+|+.+|+|+|. .+...+
T Consensus 490 l~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v 569 (926)
T TIGR00580 490 MRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDV 569 (926)
T ss_pred HHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCC
Confidence 33444444567899999999999988776654 345689999999999999999999999999996 455678
Q ss_pred CCCCCcEEEE
Q 008207 424 DINDVQLIIQ 433 (574)
Q Consensus 424 di~~v~~VI~ 433 (574)
.+.++.+||.
T Consensus 570 ~f~~L~llVI 579 (926)
T TIGR00580 570 KFKDLGLLII 579 (926)
T ss_pred CcccCCEEEe
Confidence 8889998884
No 387
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=92.00 E-value=2.2 Score=43.77 Aligned_cols=41 Identities=15% Similarity=0.308 Sum_probs=23.7
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEecc
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT 303 (574)
....++|||||||.|.. .....++..+..++..-++++.++
T Consensus 115 ~~~~~vviidea~~l~~----~~~~~Ll~~le~~~~~~~lIl~~~ 155 (355)
T TIGR02397 115 SGKYKVYIIDEVHMLSK----SAFNALLKTLEEPPEHVVFILATT 155 (355)
T ss_pred cCCceEEEEeChhhcCH----HHHHHHHHHHhCCccceeEEEEeC
Confidence 45678999999998853 334555555544322223334443
No 388
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=91.98 E-value=0.57 Score=45.62 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=38.1
Q ss_pred ceEEEecCchhhhcCCcHHHHHHHHHhccC-----ccCceEEEEeccCchhHHHHHHHhcc
Q 008207 262 LKFRVLDEADEMLRMGFVEDVELILGKVED-----ANKVQTLLFSATLPSWVKHISTKFLK 317 (574)
Q Consensus 262 ~~~lVlDEah~~l~~~~~~~~~~il~~l~~-----~~~~q~ll~SAT~~~~~~~~~~~~~~ 317 (574)
=.++|+||+|.| ..|..+.+.-.+.+-+. .++.-.|++|-+-...+.+++-.+.+
T Consensus 179 rslFIFDE~DKm-p~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~ 238 (344)
T KOG2170|consen 179 RSLFIFDEVDKL-PPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALENAR 238 (344)
T ss_pred CceEEechhhhc-CHhHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHHHHH
Confidence 357899999998 56666667666665432 12456788998888777766666553
No 389
>PRK06904 replicative DNA helicase; Validated
Probab=91.94 E-value=2.4 Score=45.19 Aligned_cols=116 Identities=17% Similarity=0.124 Sum_probs=55.8
Q ss_pred HhcCCcEEEEccCCChhHHHhHHHHHHHH-hCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEE
Q 008207 143 VLDGSDLVGRARTGQGKTLAFVLPILESL-TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCL 221 (574)
Q Consensus 143 il~~~dvi~~a~TGsGKTla~~lpil~~l-~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~ 221 (574)
+..|.=+|+.|.||.|||... +-+...+ .... ..+++++.- --..|+...+-... .++....+
T Consensus 218 l~~G~LiiIaarPg~GKTafa-lnia~~~a~~~g------------~~Vl~fSlE-Ms~~ql~~Rlla~~--s~v~~~~i 281 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFA-MNLCENAAMASE------------KPVLVFSLE-MPAEQIMMRMLASL--SRVDQTKI 281 (472)
T ss_pred cCCCcEEEEEeCCCCChHHHH-HHHHHHHHHhcC------------CeEEEEecc-CCHHHHHHHHHHhh--CCCCHHHh
Confidence 334555788999999999744 4343333 2211 126666533 34555555443222 22222112
Q ss_pred -eC-CcchHHHH------HHhcCCCcEEEE-----ChHHHHHhHhcCCccCCCceEEEecCchhhh
Q 008207 222 -YG-GAPYHAQE------FKLKKGIDVVIG-----TPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (574)
Q Consensus 222 -~g-g~~~~~~~------~~l~~~~~IlV~-----Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l 274 (574)
.| ..+...+. ..+...+++.|- |+..+...+.+-......+++||||=.+.|.
T Consensus 282 ~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 347 (472)
T PRK06904 282 RTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMR 347 (472)
T ss_pred ccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcC
Confidence 22 22222221 223234556663 4444443332211112257899999888774
No 390
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=91.54 E-value=0.49 Score=51.45 Aligned_cols=109 Identities=20% Similarity=0.218 Sum_probs=61.3
Q ss_pred CCcHHHHHHHHHHh--------cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHH
Q 008207 131 SLFPIQAMTFDMVL--------DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ 202 (574)
Q Consensus 131 ~~~~~Q~~~i~~il--------~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Q 202 (574)
-+-.+-...+..+. .|.=++++||+|.|||- |+..
T Consensus 327 GLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTS-------------------------------------LgkS 369 (782)
T COG0466 327 GLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTS-------------------------------------LGKS 369 (782)
T ss_pred CchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchh-------------------------------------HHHH
Confidence 44555555554432 45568899999999994 2333
Q ss_pred HHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEE-EChHHHHHhHhcCC-ccCCCceEEEecCchhhhcCCcHH
Q 008207 203 VHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVI-GTPGRIKDHIERGN-IDLSSLKFRVLDEADEMLRMGFVE 280 (574)
Q Consensus 203 v~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV-~Tp~~l~~~l~~~~-~~l~~~~~lVlDEah~~l~~~~~~ 280 (574)
+++.+.+- -+-.-.||.....+. +..-.=.| +-||+++.-|.+-. .+ -++++||+|.|...-.++
T Consensus 370 IA~al~Rk------fvR~sLGGvrDEAEI---RGHRRTYIGamPGrIiQ~mkka~~~N----Pv~LLDEIDKm~ss~rGD 436 (782)
T COG0466 370 IAKALGRK------FVRISLGGVRDEAEI---RGHRRTYIGAMPGKIIQGMKKAGVKN----PVFLLDEIDKMGSSFRGD 436 (782)
T ss_pred HHHHhCCC------EEEEecCccccHHHh---ccccccccccCChHHHHHHHHhCCcC----CeEEeechhhccCCCCCC
Confidence 33333211 122234565443333 33333444 45999999887633 22 278999999996443334
Q ss_pred HHHHHHHhc
Q 008207 281 DVELILGKV 289 (574)
Q Consensus 281 ~~~~il~~l 289 (574)
--..++.-+
T Consensus 437 PaSALLEVL 445 (782)
T COG0466 437 PASALLEVL 445 (782)
T ss_pred hHHHHHhhc
Confidence 344445444
No 391
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=91.53 E-value=1.1 Score=46.36 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=33.4
Q ss_pred CceEEEecCchhhhcC-CcHHHHHHHHHhccCccCceEEEEeccCchhHH
Q 008207 261 SLKFRVLDEADEMLRM-GFVEDVELILGKVEDANKVQTLLFSATLPSWVK 309 (574)
Q Consensus 261 ~~~~lVlDEah~~l~~-~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~ 309 (574)
+++++++|.++.+... .....+-.++..+.... .|+++.|-..|..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~-kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENG-KQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcC-CEEEEEcCCCchhhc
Confidence 7899999999987544 34555666777776543 377777777776554
No 392
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=91.43 E-value=3 Score=41.87 Aligned_cols=108 Identities=17% Similarity=0.118 Sum_probs=61.2
Q ss_pred CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcc
Q 008207 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~ 226 (574)
..+|+.||.|+|||..+-+.+. .. +....+.+=+.-|..-.+.+.+.|+.--..
T Consensus 163 pSmIlWGppG~GKTtlArlia~-----ts--------k~~SyrfvelSAt~a~t~dvR~ife~aq~~------------- 216 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIAS-----TS--------KKHSYRFVELSATNAKTNDVRDIFEQAQNE------------- 216 (554)
T ss_pred CceEEecCCCCchHHHHHHHHh-----hc--------CCCceEEEEEeccccchHHHHHHHHHHHHH-------------
Confidence 4699999999999975433221 11 122345677777766666666555432100
Q ss_pred hHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCch
Q 008207 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 227 ~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~ 306 (574)
......-.+|++||+|+.- . .+-..++-++. +--+++.-||-.+
T Consensus 217 -----------------------------~~l~krkTilFiDEiHRFN-k---sQQD~fLP~VE---~G~I~lIGATTEN 260 (554)
T KOG2028|consen 217 -----------------------------KSLTKRKTILFIDEIHRFN-K---SQQDTFLPHVE---NGDITLIGATTEN 260 (554)
T ss_pred -----------------------------HhhhcceeEEEeHHhhhhh-h---hhhhcccceec---cCceEEEecccCC
Confidence 0112233578999999873 2 22223333332 3457788888765
Q ss_pred hHHHHHHHhc
Q 008207 307 WVKHISTKFL 316 (574)
Q Consensus 307 ~~~~~~~~~~ 316 (574)
.-.++..-.+
T Consensus 261 PSFqln~aLl 270 (554)
T KOG2028|consen 261 PSFQLNAALL 270 (554)
T ss_pred CccchhHHHH
Confidence 5555555555
No 393
>PF05729 NACHT: NACHT domain
Probab=91.27 E-value=1.8 Score=38.44 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=17.5
Q ss_pred cEEEEccCCChhHHHhHHHHHHHHhC
Q 008207 148 DLVGRARTGQGKTLAFVLPILESLTN 173 (574)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil~~l~~ 173 (574)
-+++.|++|+|||.... -++..+..
T Consensus 2 ~l~I~G~~G~GKStll~-~~~~~~~~ 26 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR-KLAQQLAE 26 (166)
T ss_pred EEEEECCCCCChHHHHH-HHHHHHHh
Confidence 47899999999998643 34444443
No 394
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.27 E-value=4.1 Score=43.30 Aligned_cols=97 Identities=22% Similarity=0.295 Sum_probs=75.2
Q ss_pred CCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHh
Q 008207 155 TGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234 (574)
Q Consensus 155 TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l 234 (574)
.+.||+..-++.+.+.+..+ -.|.+||.+-+.+-|.|++.++. .+.++++..++|..+.......+
T Consensus 366 vF~gse~~K~lA~rq~v~~g-----------~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~ 431 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASG-----------FKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETM 431 (593)
T ss_pred eeeecchhHHHHHHHHHhcc-----------CCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHH
Confidence 47888888788888777665 34558999999999999999886 34678999999997765444333
Q ss_pred ----cCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCch
Q 008207 235 ----KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271 (574)
Q Consensus 235 ----~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah 271 (574)
.....++||| +.+.+| +++.++.+||-+..-
T Consensus 432 ~~FR~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 432 ERFRIGKIWVLICT-----DLLARG-IDFKGVNLVINYDFP 466 (593)
T ss_pred HHHhccCeeEEEeh-----hhhhcc-ccccCcceEEecCCC
Confidence 3468999999 677776 799999999997654
No 395
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.13 E-value=3.1 Score=41.43 Aligned_cols=133 Identities=19% Similarity=0.217 Sum_probs=70.2
Q ss_pred cEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeC--cHHHHHHHHHHHHHhhCCCCceEEEE-eCC
Q 008207 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP--TRELAKQVHEDFDVYGGAVGLTSCCL-YGG 224 (574)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~P--treLa~Qv~~~~~~~~~~~~~~~~~~-~gg 224 (574)
-++++|-.|+|||.+..=-+ .++.... .++++.+- .|+=|. ++++.|+...++.+..- +|+
T Consensus 141 Vil~vGVNG~GKTTTIaKLA-~~l~~~g------------~~VllaA~DTFRAaAi---EQL~~w~er~gv~vI~~~~G~ 204 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLA-KYLKQQG------------KSVLLAAGDTFRAAAI---EQLEVWGERLGVPVISGKEGA 204 (340)
T ss_pred EEEEEecCCCchHhHHHHHH-HHHHHCC------------CeEEEEecchHHHHHH---HHHHHHHHHhCCeEEccCCCC
Confidence 37889999999998744333 3333221 23555542 344443 34445555556666542 333
Q ss_pred cchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhc-CCcHHHHHHHHHhccCc----cCceEEE
Q 008207 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR-MGFVEDVELILGKVEDA----NKVQTLL 299 (574)
Q Consensus 225 ~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~-~~~~~~~~~il~~l~~~----~~~q~ll 299 (574)
.+... ..+.++. -.-+++++|++|=|-||-+ .+..+++.+|.+-+.+. |.--++.
T Consensus 205 DpAaV------------------afDAi~~--Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llv 264 (340)
T COG0552 205 DPAAV------------------AFDAIQA--AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLV 264 (340)
T ss_pred CcHHH------------------HHHHHHH--HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEE
Confidence 32211 1222222 1234566777777776643 23556677776655431 2223444
Q ss_pred EeccCchhHHHHHHHhc
Q 008207 300 FSATLPSWVKHISTKFL 316 (574)
Q Consensus 300 ~SAT~~~~~~~~~~~~~ 316 (574)
+=||....-..-++.|-
T Consensus 265 lDAttGqnal~QAk~F~ 281 (340)
T COG0552 265 LDATTGQNALSQAKIFN 281 (340)
T ss_pred EEcccChhHHHHHHHHH
Confidence 58998876656565553
No 396
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.99 E-value=2.7 Score=42.57 Aligned_cols=54 Identities=17% Similarity=0.205 Sum_probs=32.6
Q ss_pred CcccccCCCHHHHHHHHHC----CCC-CCc----------HHHHHHH-----HHHhcC-----CcEEEEccCCChhHHH
Q 008207 109 NAVSRFRISVPLREKLKSK----GIE-SLF----------PIQAMTF-----DMVLDG-----SDLVGRARTGQGKTLA 162 (574)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~----g~~-~~~----------~~Q~~~i-----~~il~~-----~dvi~~a~TGsGKTla 162 (574)
..|+..+....|.+.|+.- +.. ... -++..++ |...+| +-++..||+|+|||+.
T Consensus 183 ~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 183 KKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLL 261 (491)
T ss_pred CCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHH
Confidence 4577778888888877652 110 111 1122222 333344 6799999999999974
No 397
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=90.99 E-value=1.9 Score=45.73 Aligned_cols=41 Identities=20% Similarity=0.351 Sum_probs=24.1
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEecc
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT 303 (574)
....+++||||+|.|.. .....+++.+..++..-+++|.++
T Consensus 119 ~~~~kvvIIdead~lt~----~~~n~LLk~lEep~~~~~~Il~t~ 159 (451)
T PRK06305 119 KSRYKIYIIDEVHMLTK----EAFNSLLKTLEEPPQHVKFFLATT 159 (451)
T ss_pred cCCCEEEEEecHHhhCH----HHHHHHHHHhhcCCCCceEEEEeC
Confidence 35678999999998853 234455555554333233444443
No 398
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=90.96 E-value=0.2 Score=54.69 Aligned_cols=50 Identities=28% Similarity=0.169 Sum_probs=40.3
Q ss_pred CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhh
Q 008207 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~ 211 (574)
.++++.||||||||..+++|-+.... . .++|+=|--|+........++.+
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~--~-------------S~VV~DpKGEl~~~Ta~~R~~~G 208 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWE--D-------------SVVVHDIKLENYELTSGWREKQG 208 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCC--C-------------CEEEEeCcHHHHHHHHHHHHHCC
Confidence 57999999999999999999875432 1 28999999999988877766543
No 399
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.92 E-value=0.87 Score=50.55 Aligned_cols=44 Identities=16% Similarity=0.265 Sum_probs=37.6
Q ss_pred CceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCch
Q 008207 261 SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 261 ~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~ 306 (574)
+.=++|+|..|++.+.-....+..++++.|. +.+.++.|-+-|.
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~--~l~lvv~SR~rP~ 172 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKHAPE--NLTLVVTSRSRPQ 172 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHhCCC--CeEEEEEeccCCC
Confidence 3458999999999888888889999999988 8899998888664
No 400
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=90.88 E-value=1.5 Score=49.42 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=15.7
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
..++++.||+|+|||...
T Consensus 207 ~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 468999999999999864
No 401
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.78 E-value=3.8 Score=43.20 Aligned_cols=69 Identities=23% Similarity=0.208 Sum_probs=44.6
Q ss_pred ccCCCHHHHHHHHHCCCCCCcHHHHHHHHH----Hhc--------CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcc
Q 008207 113 RFRISVPLREKLKSKGIESLFPIQAMTFDM----VLD--------GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASK 180 (574)
Q Consensus 113 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~----il~--------~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~ 180 (574)
.||.+.+-++.....|+....|-=...+.. +.+ -..+++.+|.|||||..++-.++ .
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~---~-------- 561 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIAL---S-------- 561 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHh---h--------
Confidence 478999999988888876655544433322 111 13599999999999964332222 1
Q ss_pred cCCCCCCCeEEEEeCc
Q 008207 181 KTGYGRAPSVLVLLPT 196 (574)
Q Consensus 181 ~~~~~~~~~~Lil~Pt 196 (574)
..-|.+=|++|.
T Consensus 562 ----S~FPFvKiiSpe 573 (744)
T KOG0741|consen 562 ----SDFPFVKIISPE 573 (744)
T ss_pred ----cCCCeEEEeChH
Confidence 234567788875
No 402
>PRK10436 hypothetical protein; Provisional
Probab=90.61 E-value=0.43 Score=50.50 Aligned_cols=45 Identities=29% Similarity=0.457 Sum_probs=29.9
Q ss_pred HHHCCCCCCcHHHHHHHHHHh--cCCcEEEEccCCChhHHHhHHHHHHHHh
Q 008207 124 LKSKGIESLFPIQAMTFDMVL--DGSDLVGRARTGQGKTLAFVLPILESLT 172 (574)
Q Consensus 124 l~~~g~~~~~~~Q~~~i~~il--~~~dvi~~a~TGsGKTla~~lpil~~l~ 172 (574)
|.++|+ .+-|.+.+..++ .+.-++++||||||||... ..++..+.
T Consensus 197 L~~LG~---~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~ 243 (462)
T PRK10436 197 LETLGM---TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLN 243 (462)
T ss_pred HHHcCc---CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhC
Confidence 445554 555666666554 3456899999999999863 44555554
No 403
>PRK14873 primosome assembly protein PriA; Provisional
Probab=90.41 E-value=0.96 Score=50.22 Aligned_cols=89 Identities=12% Similarity=0.184 Sum_probs=69.8
Q ss_pred chhhhhhhhHHHHh-hcCCCeEEEEecChHHHHHHHHhCC------CCccccccCCHHHHHHHHHHHhCCCccEEEEecc
Q 008207 346 SSARSQVIPDIIRC-YSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418 (574)
Q Consensus 346 ~~~~~~~l~~ll~~-~~~~~~~lVF~~t~~~~~~l~~~l~------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~ 418 (574)
.+.|.+....++.. ...++.+||.++....+..+...|. .+..+|++++..+|.+.+.+..+|+.+|+|.|-.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 34566666666543 4567899999999988877766664 4678999999999999999999999999999975
Q ss_pred ccccCCCCCCcEEEEeC
Q 008207 419 AARGLDINDVQLIIQCE 435 (574)
Q Consensus 419 ~~~Gldi~~v~~VI~~d 435 (574)
+. =.-+++..+||..+
T Consensus 250 Av-FaP~~~LgLIIvdE 265 (665)
T PRK14873 250 AV-FAPVEDLGLVAIWD 265 (665)
T ss_pred eE-EeccCCCCEEEEEc
Confidence 43 35677888888655
No 404
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=90.40 E-value=7 Score=42.54 Aligned_cols=134 Identities=22% Similarity=0.205 Sum_probs=78.5
Q ss_pred cHHHHHHHHHHhc-------CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHH
Q 008207 133 FPIQAMTFDMVLD-------GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (574)
Q Consensus 133 ~~~Q~~~i~~il~-------~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~ 205 (574)
|--|..++-.+.. +--+-+.|.-|-||+.|..+.+...+..+-. .+.|.+|.-+=..-+++
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~Gys------------nIyvtSPspeNlkTlFe 322 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFGYS------------NIYVTSPSPENLKTLFE 322 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcCcc------------eEEEcCCChHHHHHHHH
Confidence 4568777654432 2346688999999999999999988876643 27888899776555544
Q ss_pred HHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhc-----------------CCccCCCceEEEec
Q 008207 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-----------------GNIDLSSLKFRVLD 268 (574)
Q Consensus 206 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~-----------------~~~~l~~~~~lVlD 268 (574)
.+-+=+...++.-. -..+|+-.|..-+...+.+ +...+...++||||
T Consensus 323 Fv~kGfDaL~Yqeh----------------~Dy~iI~s~np~fkkaivRInifr~hrQtIQYi~P~D~~kl~q~eLlVID 386 (1011)
T KOG2036|consen 323 FVFKGFDALEYQEH----------------VDYDIIQSTNPDFKKAIVRINIFREHRQTIQYISPHDHQKLGQAELLVID 386 (1011)
T ss_pred HHHcchhhhcchhh----------------cchhhhhhcChhhhhhEEEEEEeccccceeEeeccchhhhccCCcEEEec
Confidence 33211111111000 0123333333333222211 22346778999999
Q ss_pred CchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCc
Q 008207 269 EADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (574)
Q Consensus 269 Eah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~ 305 (574)
||-.+- ..-+..++ .+.+++|+.|+.
T Consensus 387 EAAAIP----Lplvk~Li-------gPylVfmaSTin 412 (1011)
T KOG2036|consen 387 EAAAIP----LPLVKKLI-------GPYLVFMASTIN 412 (1011)
T ss_pred hhhcCC----HHHHHHhh-------cceeEEEeeccc
Confidence 999774 34444443 346888998864
No 405
>PRK08506 replicative DNA helicase; Provisional
Probab=90.38 E-value=1.7 Score=46.47 Aligned_cols=114 Identities=16% Similarity=0.106 Sum_probs=54.6
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCC
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg 224 (574)
.|.=+++.|+||.|||...+--+.+.+..+ ..+++++.- .-+.|+...+-......++.-. ..|.
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~~g-------------~~V~~fSlE-Ms~~ql~~Rlla~~s~v~~~~i-~~~~ 255 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALNQD-------------KGVAFFSLE-MPAEQLMLRMLSAKTSIPLQNL-RTGD 255 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHhcC-------------CcEEEEeCc-CCHHHHHHHHHHHhcCCCHHHH-hcCC
Confidence 455688899999999975544444443222 126666532 4455555554322212211110 1223
Q ss_pred cchHHH------HHHhcCCCcEEEE-----ChHHHHHhHhcCCccCCCceEEEecCchhhh
Q 008207 225 APYHAQ------EFKLKKGIDVVIG-----TPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (574)
Q Consensus 225 ~~~~~~------~~~l~~~~~IlV~-----Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l 274 (574)
.+...+ ...+.+ ..+.|- |+..+...+.+-......+++||||=.+.|.
T Consensus 256 l~~~e~~~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 256 LDDDEWERLSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred CCHHHHHHHHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 222221 122223 335443 3334443333211112357899999988764
No 406
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=90.37 E-value=2.2 Score=38.73 Aligned_cols=141 Identities=19% Similarity=0.256 Sum_probs=70.1
Q ss_pred EEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHH-HHHHHHHhhCCCCceEEEEeCCcch
Q 008207 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ-VHEDFDVYGGAVGLTSCCLYGGAPY 227 (574)
Q Consensus 149 vi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Q-v~~~~~~~~~~~~~~~~~~~gg~~~ 227 (574)
++|.-..|-|||.+++--++..+-++ .+++|+.=-+-=... =...+..++ ..+....+--+...
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG-------------~rv~vvQFiKg~~~~GE~~~~~~~~--~~v~~~~~~~g~tw 95 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHG-------------LRVGVVQFIKGGWKYGEEAALEKFG--LGVEFHGMGEGFTW 95 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCC-------------CEEEEEEEeecCcchhHHHHHHhhc--cceeEEecCCceeC
Confidence 66777788899998777777666544 357776522211000 011122221 11222111111111
Q ss_pred HHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcH--HHHHHHHHhccCccCceEEEEecc-C
Q 008207 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV--EDVELILGKVEDANKVQTLLFSAT-L 304 (574)
Q Consensus 228 ~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~--~~~~~il~~l~~~~~~q~ll~SAT-~ 304 (574)
..+.+. .++ ......+.+... .+.-..+++||+||.-.++..++. +++..++..-| .-+.+++|.. .
T Consensus 96 ~~~~~~----~d~--~aa~~~w~~a~~-~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP---~~~~vIiTGr~a 165 (198)
T COG2109 96 ETQDRE----ADI--AAAKAGWEHAKE-ALADGKYDLVILDELNYALRYGLLPLEEVVALLKARP---EHTHVIITGRGA 165 (198)
T ss_pred CCcCcH----HHH--HHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCC---CCcEEEEECCCC
Confidence 111100 122 223333333222 122336899999999999988844 44455554444 4456666664 6
Q ss_pred chhHHHHHHH
Q 008207 305 PSWVKHISTK 314 (574)
Q Consensus 305 ~~~~~~~~~~ 314 (574)
|+++.+++..
T Consensus 166 p~~lie~ADl 175 (198)
T COG2109 166 PPELIELADL 175 (198)
T ss_pred CHHHHHHHHH
Confidence 7776666544
No 407
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=90.22 E-value=5.2 Score=36.19 Aligned_cols=140 Identities=14% Similarity=0.149 Sum_probs=59.6
Q ss_pred EEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchH
Q 008207 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYH 228 (574)
Q Consensus 149 vi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~ 228 (574)
+.+....|-|||.|++--++..+-.+ .+++|+.=.+. ..-+.++..+....++..... |. .+.
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~G-------------~rV~ivQFlKg--~~~~GE~~~l~~l~~~~~~~~-g~-~f~ 68 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGHG-------------MRVLIVQFLKG--GRYSGELKALKKLPNVEIERF-GK-GFV 68 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCTT---------------EEEEESS----SS--HHHHHHGGGT--EEEE---T-T--
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhCC-------------CEEEEEEEecC--CCCcCHHHHHHhCCeEEEEEc-CC-ccc
Confidence 55667789999998777777666544 35888864443 111233333322222333221 11 111
Q ss_pred HHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHH--HHHHHHHhccCccCceEEEEeccCch
Q 008207 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVE--DVELILGKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 229 ~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~--~~~~il~~l~~~~~~q~ll~SAT~~~ 306 (574)
....... .+ .......++... ..+.-..+++||+||+=..++.++.+ ++..++...|. ..-+|+.--..|+
T Consensus 69 ~~~~~~~--~~--~~~~~~~~~~a~-~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~--~~evVlTGR~~~~ 141 (172)
T PF02572_consen 69 WRMNEEE--ED--RAAAREGLEEAK-EAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPE--SLEVVLTGRNAPE 141 (172)
T ss_dssp --GGGHH--HH--HHHHHHHHHHHH-HHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-T--T-EEEEE-SS--H
T ss_pred ccCCCcH--HH--HHHHHHHHHHHH-HHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCC--CeEEEEECCCCCH
Confidence 0000000 00 000111122211 12234568999999999999988653 44555554443 4444444445666
Q ss_pred hHHHHH
Q 008207 307 WVKHIS 312 (574)
Q Consensus 307 ~~~~~~ 312 (574)
++...+
T Consensus 142 ~l~e~A 147 (172)
T PF02572_consen 142 ELIEAA 147 (172)
T ss_dssp HHHHH-
T ss_pred HHHHhC
Confidence 665544
No 408
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=90.18 E-value=0.18 Score=45.91 Aligned_cols=44 Identities=23% Similarity=0.166 Sum_probs=30.4
Q ss_pred HHhcCCCcEEEEChHHHHHhHhcCCcc--CCCceEEEecCchhhhc
Q 008207 232 FKLKKGIDVVIGTPGRIKDHIERGNID--LSSLKFRVLDEADEMLR 275 (574)
Q Consensus 232 ~~l~~~~~IlV~Tp~~l~~~l~~~~~~--l~~~~~lVlDEah~~l~ 275 (574)
+.....++|||+++..|++-..+..+. ..+-.+|||||||.+.+
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 444556999999999998765443322 23457999999998864
No 409
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=90.15 E-value=0.43 Score=48.86 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=20.1
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~ 172 (574)
.+.-++++||||||||... ..++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 5678999999999999853 44555553
No 410
>PRK04328 hypothetical protein; Provisional
Probab=90.01 E-value=0.63 Score=45.16 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=37.0
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhh
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~ 211 (574)
.|.-+++.|++|+|||...+..+.+.+.++. .+++++ +.+-..++.+.+..++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge-------------~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGE-------------PGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCC-------------cEEEEE-eeCCHHHHHHHHHHcC
Confidence 4667999999999999866666666665543 267776 5566667777766654
No 411
>PHA00729 NTP-binding motif containing protein
Probab=89.94 E-value=3.3 Score=39.24 Aligned_cols=15 Identities=33% Similarity=0.308 Sum_probs=13.7
Q ss_pred cEEEEccCCChhHHH
Q 008207 148 DLVGRARTGQGKTLA 162 (574)
Q Consensus 148 dvi~~a~TGsGKTla 162 (574)
++++.|++|+|||..
T Consensus 19 nIlItG~pGvGKT~L 33 (226)
T PHA00729 19 SAVIFGKQGSGKTTY 33 (226)
T ss_pred EEEEECCCCCCHHHH
Confidence 799999999999964
No 412
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=89.93 E-value=2.1 Score=44.18 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=18.5
Q ss_pred HHhcCCcEEEEccCCChhHHHh
Q 008207 142 MVLDGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 142 ~il~~~dvi~~a~TGsGKTla~ 163 (574)
..-.+..|++.|+||+||++.+
T Consensus 97 ~ap~~~~vLi~GetGtGKel~A 118 (403)
T COG1221 97 YAPSGLPVLIIGETGTGKELFA 118 (403)
T ss_pred hCCCCCcEEEecCCCccHHHHH
Confidence 3447899999999999999854
No 413
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=89.87 E-value=0.42 Score=44.07 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=25.5
Q ss_pred CCcHHHHHHHHHHh-cCCcEEEEccCCChhHHHh
Q 008207 131 SLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 131 ~~~~~Q~~~i~~il-~~~dvi~~a~TGsGKTla~ 163 (574)
.+++-|...+.... .|..+++.|+||||||...
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 35566777776644 6889999999999999753
No 414
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=89.86 E-value=0.28 Score=43.21 Aligned_cols=117 Identities=25% Similarity=0.197 Sum_probs=63.8
Q ss_pred CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcc
Q 008207 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~ 226 (574)
..+.+.+++|+|||.+ ++-+.+.+....-+ + .=|++|- ++.=+...|+++..+..|..
T Consensus 6 mki~ITG~PGvGKtTl-~~ki~e~L~~~g~k----------v-gGf~t~E----------VR~gGkR~GF~Ivdl~tg~~ 63 (179)
T COG1618 6 MKIFITGRPGVGKTTL-VLKIAEKLREKGYK----------V-GGFITPE----------VREGGKRIGFKIVDLATGEE 63 (179)
T ss_pred eEEEEeCCCCccHHHH-HHHHHHHHHhcCce----------e-eeEEeee----------eecCCeEeeeEEEEccCCce
Confidence 3588999999999975 56666777654221 1 2345543 23344455677666653321
Q ss_pred hHHHHHHhcCCCcEEEEChHHHHHhHhcCCc-----cCCCceEEEecCchhhhc--CCcHHHHHHHHHh
Q 008207 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNI-----DLSSLKFRVLDEADEMLR--MGFVEDVELILGK 288 (574)
Q Consensus 227 ~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~-----~l~~~~~lVlDEah~~l~--~~~~~~~~~il~~ 288 (574)
..-.. ......-|+-++-..+.+++-.. .+..-+++|+||.--|-- ..|.+.+..++..
T Consensus 64 ~~la~---~~~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 64 GILAR---VGFSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred EEEEE---cCCCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 10000 01123344444444444332100 133368999999998842 3477777777743
No 415
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=89.86 E-value=4.7 Score=41.39 Aligned_cols=111 Identities=14% Similarity=0.116 Sum_probs=61.0
Q ss_pred CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCc
Q 008207 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA 225 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~ 225 (574)
.+-+.+.|+.|.|||.. +-++-....... +.|+ ..-+-..+++..+..+. |+.
T Consensus 62 ~~GlYl~G~vG~GKT~L--md~f~~~lp~~~----------k~R~----HFh~Fm~~vh~~l~~~~-----------~~~ 114 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTML--MDLFYDSLPIKR----------KRRV----HFHEFMLDVHSRLHQLR-----------GQD 114 (362)
T ss_pred CceEEEECCCCCchhHH--HHHHHHhCCccc----------cccc----cccHHHHHHHHHHHHHh-----------CCC
Confidence 46799999999999983 333322222111 1111 44577888888887654 111
Q ss_pred chHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCc
Q 008207 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (574)
Q Consensus 226 ~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~ 305 (574)
+.-. .+.+.+ .....+|++||.|- -|-+=.--+..++..+-.. ..-++..|-+.|
T Consensus 115 ~~l~-----------------~va~~l------~~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~-gvvlVaTSN~~P 169 (362)
T PF03969_consen 115 DPLP-----------------QVADEL------AKESRLLCFDEFQV-TDIADAMILKRLFEALFKR-GVVLVATSNRPP 169 (362)
T ss_pred ccHH-----------------HHHHHH------HhcCCEEEEeeeec-cchhHHHHHHHHHHHHHHC-CCEEEecCCCCh
Confidence 1100 111211 34466899999984 2443333345555555432 566777777777
Q ss_pred hhH
Q 008207 306 SWV 308 (574)
Q Consensus 306 ~~~ 308 (574)
..+
T Consensus 170 ~~L 172 (362)
T PF03969_consen 170 EDL 172 (362)
T ss_pred HHH
Confidence 643
No 416
>PF12846 AAA_10: AAA-like domain
Probab=89.40 E-value=0.62 Score=46.33 Aligned_cols=43 Identities=21% Similarity=0.350 Sum_probs=30.3
Q ss_pred CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHH
Q 008207 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~ 201 (574)
+.++++.|+||||||.+....+.+.+..+ ..++|+=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g-------------~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG-------------PRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC-------------CCEEEEcCCchHHH
Confidence 46899999999999987664444444433 34788877766555
No 417
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.38 E-value=5.6 Score=41.01 Aligned_cols=41 Identities=15% Similarity=0.275 Sum_probs=24.1
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEecc
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT 303 (574)
+.+.++||+||+|.|.. ..+..++..+..++..-+++++++
T Consensus 106 ~~~~kiviIDE~~~l~~----~~~~~ll~~le~~~~~~~~Il~~~ 146 (367)
T PRK14970 106 TGKYKIYIIDEVHMLSS----AAFNAFLKTLEEPPAHAIFILATT 146 (367)
T ss_pred cCCcEEEEEeChhhcCH----HHHHHHHHHHhCCCCceEEEEEeC
Confidence 45678999999998753 234555555544322234445554
No 418
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=89.25 E-value=0.35 Score=53.55 Aligned_cols=50 Identities=24% Similarity=0.206 Sum_probs=38.4
Q ss_pred CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHh
Q 008207 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (574)
..++++.||||||||..|++|-+-... . .++|+=|--|+........+..
T Consensus 139 ~~hvlviApTgSGKgvg~VIPnLL~~~--g-------------S~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 139 QPHSLVVAPTRAGKGVGVVIPTLLTFK--G-------------SVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred CceEEEEecCCCCceeeehHhHHhcCC--C-------------CEEEEeCCchHHHHHHHHHHhC
Confidence 358999999999999999999764321 1 2888889988888766655544
No 419
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=89.14 E-value=0.24 Score=47.45 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=16.5
Q ss_pred EEEeccccccCCCCCCcEEEEeC
Q 008207 413 LVATNVAARGLDINDVQLIIQCE 435 (574)
Q Consensus 413 LvaTd~~~~Gldi~~v~~VI~~d 435 (574)
-+.|---+.|+.++.|.+|+.-+
T Consensus 184 ~~~T~~e~qG~tf~~V~l~~~~~ 206 (234)
T PF01443_consen 184 RVFTVHESQGLTFDNVTLVLLSD 206 (234)
T ss_pred ceechHHcceEEeCCEEEEECCC
Confidence 45666677899998887766544
No 420
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=89.13 E-value=3.4 Score=41.58 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=28.3
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCc
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~ 305 (574)
....+++|||+||.|. ......+++.+..++..-+++|.++-+
T Consensus 91 ~~~~kv~iI~~ad~m~----~~a~naLLK~LEepp~~t~~il~~~~~ 133 (313)
T PRK05564 91 EGDKKVIIIYNSEKMT----EQAQNAFLKTIEEPPKGVFIILLCENL 133 (313)
T ss_pred cCCceEEEEechhhcC----HHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 4578999999999885 334556666666554444555555543
No 421
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=89.10 E-value=6.6 Score=43.75 Aligned_cols=116 Identities=14% Similarity=0.209 Sum_probs=72.7
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHH---Hh-cCCCcEEEEChHHHHHhHhcCCccCCCc
Q 008207 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF---KL-KKGIDVVIGTPGRIKDHIERGNIDLSSL 262 (574)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l-~~~~~IlV~Tp~~l~~~l~~~~~~l~~~ 262 (574)
+.++||.++|+..+..+.+.+... ++.+..++|+.+...... .+ ....+|+||| +.+. .++++..+
T Consensus 442 g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~-rGfDiP~v 511 (655)
T TIGR00631 442 NERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGLDLPEV 511 (655)
T ss_pred CCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chhc-CCeeeCCC
Confidence 457999999999999998888764 477888888766533322 22 3568999998 3333 46789999
Q ss_pred eEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHH
Q 008207 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 312 (574)
Q Consensus 263 ~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~ 312 (574)
++||+-+++...-......+...............+++--..+..+....
T Consensus 512 ~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~~ai 561 (655)
T TIGR00631 512 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQKAI 561 (655)
T ss_pred cEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHHHHH
Confidence 99998888753221122333344333332234456666555655444433
No 422
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=89.03 E-value=0.74 Score=47.32 Aligned_cols=28 Identities=25% Similarity=0.209 Sum_probs=20.4
Q ss_pred hcCCcEEEEccCCChhHHHhHHHHHHHHh
Q 008207 144 LDGSDLVGRARTGQGKTLAFVLPILESLT 172 (574)
Q Consensus 144 l~~~dvi~~a~TGsGKTla~~lpil~~l~ 172 (574)
-.|+.+++.|++|+|||... ..+...+.
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~-~~i~~~I~ 193 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLL-QKIAQAIT 193 (415)
T ss_pred CCCCEEEEECCCCCChhHHH-HHHHHhhc
Confidence 37899999999999999743 22444443
No 423
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=89.00 E-value=0.79 Score=47.57 Aligned_cols=79 Identities=19% Similarity=0.085 Sum_probs=51.5
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHH
Q 008207 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTREL 199 (574)
Q Consensus 120 l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreL 199 (574)
++..+++. +..+-..|.++.-..-.|+- .+.|=.|||||...++-+.+....+ +.-+++|.+=|+.|
T Consensus 152 ~l~~iesk-IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~kn-----------Pd~~I~~Tfftk~L 218 (660)
T COG3972 152 LLDTIESK-IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELHSKN-----------PDSRIAFTFFTKIL 218 (660)
T ss_pred HHHHHHHH-HhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHhcCC-----------CCceEEEEeehHHH
Confidence 34444332 33445566665544444555 6688899999986555554433333 33479999999999
Q ss_pred HHHHHHHHHHhh
Q 008207 200 AKQVHEDFDVYG 211 (574)
Q Consensus 200 a~Qv~~~~~~~~ 211 (574)
+.++...+.+|.
T Consensus 219 ~s~~r~lv~~F~ 230 (660)
T COG3972 219 ASTMRTLVPEFF 230 (660)
T ss_pred HHHHHHHHHHHH
Confidence 999988776654
No 424
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=88.98 E-value=0.89 Score=44.01 Aligned_cols=18 Identities=22% Similarity=0.134 Sum_probs=15.0
Q ss_pred CcEEEEccCCChhHHHhH
Q 008207 147 SDLVGRARTGQGKTLAFV 164 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~~ 164 (574)
.++++.||+|.|||..+.
T Consensus 53 DHvLl~GPPGlGKTTLA~ 70 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAH 70 (332)
T ss_pred CeEEeeCCCCCcHHHHHH
Confidence 469999999999997543
No 425
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=88.93 E-value=3.1 Score=41.10 Aligned_cols=44 Identities=23% Similarity=0.422 Sum_probs=27.4
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCch
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~ 306 (574)
-...+++|||+||.|. ......+++.+..++..-++++.++-+.
T Consensus 93 e~~~kv~ii~~ad~mt----~~AaNaLLK~LEEPp~~~~fiL~~~~~~ 136 (290)
T PRK05917 93 ESPYKIYIIHEADRMT----LDAISAFLKVLEDPPQHGVIILTSAKPQ 136 (290)
T ss_pred CCCceEEEEechhhcC----HHHHHHHHHHhhcCCCCeEEEEEeCChh
Confidence 3568999999999985 3444555655555444445555555433
No 426
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.82 E-value=2.2 Score=42.08 Aligned_cols=113 Identities=19% Similarity=0.237 Sum_probs=63.8
Q ss_pred CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCe-EEEEeCcH-----------HHHHHHHHHHHHhhCC
Q 008207 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPS-VLVLLPTR-----------ELAKQVHEDFDVYGGA 213 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~-~Lil~Ptr-----------eLa~Qv~~~~~~~~~~ 213 (574)
++=+++.||+|+|||.. +-.+.+.+.-... .+..+ .||=...- -|+.++++.+..+...
T Consensus 177 NRliLlhGPPGTGKTSL-CKaLaQkLSIR~~--------~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d 247 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSL-CKALAQKLSIRTN--------DRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVED 247 (423)
T ss_pred eeEEEEeCCCCCChhHH-HHHHHHhheeeec--------CccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence 46689999999999953 3344455432211 11111 34444444 3455555666666666
Q ss_pred CCceEEEEeCCc---------------c---------hHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecC
Q 008207 214 VGLTSCCLYGGA---------------P---------YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269 (574)
Q Consensus 214 ~~~~~~~~~gg~---------------~---------~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDE 269 (574)
.+.-+.++.... + .-.|...++..++++|-|..-|.+ .++.-.+|-
T Consensus 248 ~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~----------siD~AfVDR 317 (423)
T KOG0744|consen 248 RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTD----------SIDVAFVDR 317 (423)
T ss_pred CCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHH----------HHHHHhhhH
Confidence 666665554332 1 113445566667787777665544 345667788
Q ss_pred chhhhcCC
Q 008207 270 ADEMLRMG 277 (574)
Q Consensus 270 ah~~l~~~ 277 (574)
||-...-|
T Consensus 318 ADi~~yVG 325 (423)
T KOG0744|consen 318 ADIVFYVG 325 (423)
T ss_pred hhheeecC
Confidence 88654444
No 427
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=88.77 E-value=0.98 Score=48.33 Aligned_cols=46 Identities=24% Similarity=0.374 Sum_probs=30.5
Q ss_pred HHHHCCCCCCcHHHHHHHHHHhcCC--cEEEEccCCChhHHHhHHHHHHHHh
Q 008207 123 KLKSKGIESLFPIQAMTFDMVLDGS--DLVGRARTGQGKTLAFVLPILESLT 172 (574)
Q Consensus 123 ~l~~~g~~~~~~~Q~~~i~~il~~~--dvi~~a~TGsGKTla~~lpil~~l~ 172 (574)
.|.+.|| .+-|.+.+..+.... -++++||||||||... ..++..+.
T Consensus 220 ~l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l~ 267 (486)
T TIGR02533 220 DLETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRLN 267 (486)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhccC
Confidence 3455565 566777777666433 3789999999999863 33455553
No 428
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=88.71 E-value=1.3 Score=44.44 Aligned_cols=29 Identities=21% Similarity=0.122 Sum_probs=21.3
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhC
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTN 173 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~ 173 (574)
.|.-+.+.+|+|||||...+..+.+....
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~ 82 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA 82 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45678899999999998655555555443
No 429
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=88.65 E-value=0.7 Score=50.56 Aligned_cols=46 Identities=24% Similarity=0.316 Sum_probs=31.2
Q ss_pred HHHHCCCCCCcHHHHHHHHHHhc--CCcEEEEccCCChhHHHhHHHHHHHHh
Q 008207 123 KLKSKGIESLFPIQAMTFDMVLD--GSDLVGRARTGQGKTLAFVLPILESLT 172 (574)
Q Consensus 123 ~l~~~g~~~~~~~Q~~~i~~il~--~~dvi~~a~TGsGKTla~~lpil~~l~ 172 (574)
.|.+.|| .+-|.+.+..++. +.-++++||||||||.+. ..++..+.
T Consensus 294 ~l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 294 DIDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred CHHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhC
Confidence 3556665 5667777766553 455889999999999863 45555553
No 430
>PRK07004 replicative DNA helicase; Provisional
Probab=88.63 E-value=2.1 Score=45.51 Aligned_cols=26 Identities=19% Similarity=-0.001 Sum_probs=18.2
Q ss_pred hcCCcEEEEccCCChhHHHhHHHHHH
Q 008207 144 LDGSDLVGRARTGQGKTLAFVLPILE 169 (574)
Q Consensus 144 l~~~dvi~~a~TGsGKTla~~lpil~ 169 (574)
..|.=+++.|.||+|||...+--+.+
T Consensus 211 ~~g~liviaarpg~GKT~~al~ia~~ 236 (460)
T PRK07004 211 HGGELIIVAGRPSMGKTAFSMNIGEY 236 (460)
T ss_pred CCCceEEEEeCCCCCccHHHHHHHHH
Confidence 34566888999999999754433333
No 431
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=88.59 E-value=1.2 Score=43.56 Aligned_cols=46 Identities=26% Similarity=0.383 Sum_probs=29.6
Q ss_pred HHHHCCCCCCcHHHHHHHHHHhc--CCcEEEEccCCChhHHHhHHHHHHHHh
Q 008207 123 KLKSKGIESLFPIQAMTFDMVLD--GSDLVGRARTGQGKTLAFVLPILESLT 172 (574)
Q Consensus 123 ~l~~~g~~~~~~~Q~~~i~~il~--~~dvi~~a~TGsGKTla~~lpil~~l~ 172 (574)
.|.+.|+ .+-|.+.+..++. +.-+++.|+||||||... ..++..+.
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i~ 105 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELN 105 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhhC
Confidence 3455564 5556666655543 345899999999999853 33444443
No 432
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=88.59 E-value=1.3 Score=40.41 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=22.9
Q ss_pred EEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCc
Q 008207 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT 196 (574)
Q Consensus 149 vi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Pt 196 (574)
.++.||++||||...+- .+.++... +.+++++-|.
T Consensus 4 ~~i~GpM~sGKS~eLi~-~~~~~~~~------------~~~v~~~kp~ 38 (176)
T PF00265_consen 4 EFITGPMFSGKSTELIR-RIHRYEIA------------GKKVLVFKPA 38 (176)
T ss_dssp EEEEESTTSSHHHHHHH-HHHHHHHT------------T-EEEEEEES
T ss_pred EEEECCcCChhHHHHHH-HHHHHHhC------------CCeEEEEEec
Confidence 46789999999986443 33333322 2248999886
No 433
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.58 E-value=0.98 Score=45.36 Aligned_cols=58 Identities=19% Similarity=0.218 Sum_probs=38.7
Q ss_pred CCCCcHHHHHHHHH-HhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHH
Q 008207 129 IESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (574)
Q Consensus 129 ~~~~~~~Q~~~i~~-il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa 200 (574)
+..+++.|..-+.. +..+++++++|+||||||.. +.+++..+-.. .+.+.+--|.|+.
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~~-------------~rivtIEdt~E~~ 183 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPPE-------------ERIVTIEDTPELK 183 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCch-------------hcEEEEecccccc
Confidence 45667777665544 55789999999999999974 44454444322 2467776666654
No 434
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=88.50 E-value=0.58 Score=46.03 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=30.4
Q ss_pred HhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHH
Q 008207 143 VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (574)
Q Consensus 143 il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~ 201 (574)
+..+.+++++|+||||||... -.++..+... .-+++++-.+.|+-.
T Consensus 124 v~~~~~ili~G~tGSGKTT~l-~all~~i~~~------------~~~iv~iEd~~E~~l 169 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKTTLL-NALLEEIPPE------------DERIVTIEDPPELRL 169 (270)
T ss_dssp HHTTEEEEEEESTTSSHHHHH-HHHHHHCHTT------------TSEEEEEESSS-S--
T ss_pred cccceEEEEECCCccccchHH-HHHhhhcccc------------ccceEEeccccceee
Confidence 346789999999999999754 4445555443 124788887767643
No 435
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=88.50 E-value=5.2 Score=45.41 Aligned_cols=19 Identities=21% Similarity=0.130 Sum_probs=16.0
Q ss_pred CCcEEEEccCCChhHHHhH
Q 008207 146 GSDLVGRARTGQGKTLAFV 164 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~ 164 (574)
..++|+.||+|+|||...-
T Consensus 203 ~~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4589999999999998643
No 436
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=88.49 E-value=1.5 Score=45.10 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=20.3
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhC
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTN 173 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~ 173 (574)
.+..++++||||||||.. +..++..+..
T Consensus 148 ~~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 455689999999999975 3445555543
No 437
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=88.47 E-value=1.3 Score=43.27 Aligned_cols=29 Identities=14% Similarity=0.004 Sum_probs=21.7
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhC
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTN 173 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~ 173 (574)
.|.-+++.|++|+|||...+..+.+.+..
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~ 63 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR 63 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 45679999999999998666555555543
No 438
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=88.46 E-value=1.1 Score=49.80 Aligned_cols=91 Identities=19% Similarity=0.243 Sum_probs=69.2
Q ss_pred EeCCchhhhhhhhHHHH-hhcCCCeEEEEecChHHHHHHHHhCC-----CCccccccCCHHHHHHHHHHHhCCCccEEEE
Q 008207 342 LPCSSSARSQVIPDIIR-CYSSGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSGKFMTLVA 415 (574)
Q Consensus 342 ~~~~~~~~~~~l~~ll~-~~~~~~~~lVF~~t~~~~~~l~~~l~-----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLva 415 (574)
.-+..+.|.++...++. ....|..+||.++.+.....+...|. .+.++|+++++.+|.....+.++|+.+|+|.
T Consensus 223 ~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIG 302 (730)
T COG1198 223 DGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIG 302 (730)
T ss_pred eCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEE
Confidence 33455666666666665 44577899999997776655555554 7899999999999999999999999999999
Q ss_pred eccccccCCCCCCcEEEE
Q 008207 416 TNVAARGLDINDVQLIIQ 433 (574)
Q Consensus 416 Td~~~~Gldi~~v~~VI~ 433 (574)
|--+ --.-+++..+||.
T Consensus 303 tRSA-lF~Pf~~LGLIIv 319 (730)
T COG1198 303 TRSA-LFLPFKNLGLIIV 319 (730)
T ss_pred echh-hcCchhhccEEEE
Confidence 9653 2345677777773
No 439
>PRK10689 transcription-repair coupling factor; Provisional
Probab=88.41 E-value=0.99 Score=53.40 Aligned_cols=73 Identities=19% Similarity=0.177 Sum_probs=60.0
Q ss_pred cCCCeEEEEecChHHHHHHHHhCC--------CCccccccCCHHHHHHHHHHHhCCCccEEEEec-cccccCCCCCCcEE
Q 008207 361 SSGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN-VAARGLDINDVQLI 431 (574)
Q Consensus 361 ~~~~~~lVF~~t~~~~~~l~~~l~--------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd-~~~~Gldi~~v~~V 431 (574)
..+.+++|.++|..-|...+..+. .+..++|..+..++..++....+|..+|+|+|. .+...+.+.++.+|
T Consensus 647 ~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lL 726 (1147)
T PRK10689 647 ENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLL 726 (1147)
T ss_pred HcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEE
Confidence 467899999999999887776554 345688999999999999999999999999995 45556778888888
Q ss_pred EE
Q 008207 432 IQ 433 (574)
Q Consensus 432 I~ 433 (574)
|.
T Consensus 727 VI 728 (1147)
T PRK10689 727 IV 728 (1147)
T ss_pred EE
Confidence 74
No 440
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=88.37 E-value=1.4 Score=44.72 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=27.7
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccC
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~ 304 (574)
....+++||||||+|. ......+++.+..+++.-+++|.++-
T Consensus 108 ~~~~kvviI~~a~~~~----~~a~NaLLK~LEEPp~~~~~Il~t~~ 149 (329)
T PRK08058 108 ESNKKVYIIEHADKMT----ASAANSLLKFLEEPSGGTTAILLTEN 149 (329)
T ss_pred ccCceEEEeehHhhhC----HHHHHHHHHHhcCCCCCceEEEEeCC
Confidence 4567999999999885 33455666666654444455555553
No 441
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=88.35 E-value=2 Score=44.75 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=14.4
Q ss_pred CcEEEEccCCChhHHH
Q 008207 147 SDLVGRARTGQGKTLA 162 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla 162 (574)
+.+++.||+|+|||+.
T Consensus 166 ~gvLL~GppGtGKT~l 181 (389)
T PRK03992 166 KGVLLYGPPGTGKTLL 181 (389)
T ss_pred CceEEECCCCCChHHH
Confidence 5699999999999975
No 442
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.34 E-value=0.93 Score=45.97 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=14.7
Q ss_pred CcEEEEccCCChhHHH
Q 008207 147 SDLVGRARTGQGKTLA 162 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla 162 (574)
++++..+|+|+|||++
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 6899999999999975
No 443
>PRK05748 replicative DNA helicase; Provisional
Probab=88.20 E-value=3.2 Score=44.11 Aligned_cols=26 Identities=19% Similarity=0.052 Sum_probs=18.3
Q ss_pred hcCCcEEEEccCCChhHHHhHHHHHH
Q 008207 144 LDGSDLVGRARTGQGKTLAFVLPILE 169 (574)
Q Consensus 144 l~~~dvi~~a~TGsGKTla~~lpil~ 169 (574)
..|.-+++.|+||.|||...+-.+.+
T Consensus 201 ~~G~livIaarpg~GKT~~al~ia~~ 226 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTAFALNIAQN 226 (448)
T ss_pred CCCceEEEEeCCCCCchHHHHHHHHH
Confidence 34566889999999999754443433
No 444
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=88.12 E-value=0.64 Score=50.78 Aligned_cols=54 Identities=22% Similarity=0.394 Sum_probs=46.4
Q ss_pred HHHHhCCCccEEEEeccccccCCCCCCcEE--------EEeCCCCCHhHHHHHhcccccCCC
Q 008207 402 LAGFRSGKFMTLVATNVAARGLDINDVQLI--------IQCEPPRDVEAYIHRSGRTGRAGN 455 (574)
Q Consensus 402 ~~~F~~g~~~vLvaTd~~~~Gldi~~v~~V--------I~~d~p~s~~~yiqr~GR~gR~g~ 455 (574)
-++|..|+-.|-|-+.+++-||.+..-+-| |...+|||...-||..|||+|..+
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQ 911 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQ 911 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccc
Confidence 357888988899999999999998765555 457899999999999999999976
No 445
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=88.04 E-value=2.4 Score=41.37 Aligned_cols=141 Identities=19% Similarity=0.142 Sum_probs=70.3
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCc---HHHHHHHHHHHHHhhCCCCceEEEE
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT---RELAKQVHEDFDVYGGAVGLTSCCL 221 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Pt---reLa~Qv~~~~~~~~~~~~~~~~~~ 221 (574)
.|.=+++.|+||.|||...+-.+.+.+.... ..+++++.- .+++..+.... .. +....+
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~------------~~vly~SlEm~~~~l~~R~la~~----s~--v~~~~i 79 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNGG------------YPVLYFSLEMSEEELAARLLARL----SG--VPYNKI 79 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTTS------------SEEEEEESSS-HHHHHHHHHHHH----HT--STHHHH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhcC------------CeEEEEcCCCCHHHHHHHHHHHh----hc--chhhhh
Confidence 3455889999999999876666666655431 248888753 33333332222 11 111111
Q ss_pred eCC-cchHHH------HHHhcCCCcEEEEChH----HHHHhHhcCCccCCCceEEEecCchhhhcC----CcHHHHHHHH
Q 008207 222 YGG-APYHAQ------EFKLKKGIDVVIGTPG----RIKDHIERGNIDLSSLKFRVLDEADEMLRM----GFVEDVELIL 286 (574)
Q Consensus 222 ~gg-~~~~~~------~~~l~~~~~IlV~Tp~----~l~~~l~~~~~~l~~~~~lVlDEah~~l~~----~~~~~~~~il 286 (574)
..+ .+.... ...+....-.+..+|+ .+...+.+-......+++||||=.|.|-.. +....+..+.
T Consensus 80 ~~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~ 159 (259)
T PF03796_consen 80 RSGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEIS 159 (259)
T ss_dssp HCCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHH
T ss_pred hccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHH
Confidence 112 111111 1123332323334443 444444332222367899999999987542 2445455553
Q ss_pred Hhc---cCccCceEEEEecc
Q 008207 287 GKV---EDANKVQTLLFSAT 303 (574)
Q Consensus 287 ~~l---~~~~~~q~ll~SAT 303 (574)
..+ ....++.++++|..
T Consensus 160 ~~Lk~lA~~~~i~vi~~sQl 179 (259)
T PF03796_consen 160 RELKALAKELNIPVIALSQL 179 (259)
T ss_dssp HHHHHHHHHHTSEEEEEEEB
T ss_pred HHHHHHHHHcCCeEEEcccc
Confidence 333 22235666766664
No 446
>PRK08840 replicative DNA helicase; Provisional
Probab=88.00 E-value=4.7 Score=42.95 Aligned_cols=42 Identities=17% Similarity=0.075 Sum_probs=24.2
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHH
Q 008207 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169 (574)
Q Consensus 128 g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~ 169 (574)
|+.+.++---..+.=+..|.=+++.|.||.|||...+--+.+
T Consensus 199 gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~ 240 (464)
T PRK08840 199 GVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCEN 240 (464)
T ss_pred CcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHH
Confidence 333444333344433445566788999999999754333333
No 447
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=88.00 E-value=2.7 Score=44.28 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=25.1
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHH
Q 008207 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170 (574)
Q Consensus 128 g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~ 170 (574)
|+.+.++-=...+.-+..|.=+++.|+||+|||...+--+.+.
T Consensus 176 gi~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~ 218 (421)
T TIGR03600 176 GLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENV 218 (421)
T ss_pred ceeCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 3333333333333334456678899999999997544444343
No 448
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=87.99 E-value=0.74 Score=42.12 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=29.6
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEec
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SA 302 (574)
+.+.+++++||...-++......+..++..+... ..++++.|-
T Consensus 114 ~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~tiIiiSH 156 (178)
T cd03239 114 IKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TSQFIVITL 156 (178)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEEC
Confidence 3567899999999988877677776666665432 345555544
No 449
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.89 E-value=4.7 Score=41.91 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCChhHHH
Q 008207 145 DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla 162 (574)
.+..+.|+|.+|+|||.+
T Consensus 174 t~gSlYVsG~PGtgkt~~ 191 (529)
T KOG2227|consen 174 TSGSLYVSGQPGTGKTAL 191 (529)
T ss_pred cCcceEeeCCCCcchHHH
Confidence 356899999999999975
No 450
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.89 E-value=8.2 Score=37.79 Aligned_cols=115 Identities=17% Similarity=0.216 Sum_probs=64.3
Q ss_pred HHHHhcCCc-----EEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCC
Q 008207 140 FDMVLDGSD-----LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV 214 (574)
Q Consensus 140 i~~il~~~d-----vi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~ 214 (574)
+|.+..|+. +++.+|+|+||+..+- ++..-.+ ...+-+.+..|+..|..+-+++-.
T Consensus 155 FPqlFtGkR~PwrgiLLyGPPGTGKSYLAK--AVATEAn---------------STFFSvSSSDLvSKWmGESEkLVk-- 215 (439)
T KOG0739|consen 155 FPQLFTGKRKPWRGILLYGPPGTGKSYLAK--AVATEAN---------------STFFSVSSSDLVSKWMGESEKLVK-- 215 (439)
T ss_pred chhhhcCCCCcceeEEEeCCCCCcHHHHHH--HHHhhcC---------------CceEEeehHHHHHHHhccHHHHHH--
Confidence 356666654 9999999999996432 2211111 146777777888877655444321
Q ss_pred CceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCC---cHHHHH----HHHH
Q 008207 215 GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG---FVEDVE----LILG 287 (574)
Q Consensus 215 ~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~---~~~~~~----~il~ 287 (574)
+ |..+- + -..-+.|.|||+|.|.... -.+... .++-
T Consensus 216 ---------------n-----------------LFemA-R----e~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLV 258 (439)
T KOG0739|consen 216 ---------------N-----------------LFEMA-R----ENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLV 258 (439)
T ss_pred ---------------H-----------------HHHHH-H----hcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHH
Confidence 1 11111 1 1234688999999775322 111122 2222
Q ss_pred hccC--ccCceEEEEeccCchhHHH
Q 008207 288 KVED--ANKVQTLLFSATLPSWVKH 310 (574)
Q Consensus 288 ~l~~--~~~~q~ll~SAT~~~~~~~ 310 (574)
++.. ..+--++++-||-.+|+..
T Consensus 259 QMqGVG~d~~gvLVLgATNiPw~LD 283 (439)
T KOG0739|consen 259 QMQGVGNDNDGVLVLGATNIPWVLD 283 (439)
T ss_pred hhhccccCCCceEEEecCCCchhHH
Confidence 2221 1234688999998888654
No 451
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=87.76 E-value=12 Score=38.16 Aligned_cols=142 Identities=15% Similarity=0.098 Sum_probs=61.3
Q ss_pred EEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHH-HHHHHHH---HHHHhhCC-CCceEEEEeCC
Q 008207 150 VGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE-LAKQVHE---DFDVYGGA-VGLTSCCLYGG 224 (574)
Q Consensus 150 i~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptre-La~Qv~~---~~~~~~~~-~~~~~~~~~gg 224 (574)
++.++.|+|||.+.++.++..+...+. ..+++++ ||.. +...+.. .+..+... ..+........
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~----------~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP----------GRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDR 69 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS------------EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SS
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC----------CcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCC
Confidence 467899999999888877777765432 1235555 5554 4443222 23333322 11221111111
Q ss_pred cchHHHHHHhcCCCcEEEEChHHH--HHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEec
Q 008207 225 APYHAQEFKLKKGIDVVIGTPGRI--KDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302 (574)
Q Consensus 225 ~~~~~~~~~l~~~~~IlV~Tp~~l--~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SA 302 (574)
.- .+.++..|.+.+.+.- ..-+. =..+.++++||+-.+.+..+...+........ ....+++|-
T Consensus 70 ~~------~~~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~ 135 (384)
T PF03237_consen 70 KI------ILPNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELIRRLRATWG---GSIRMYIST 135 (384)
T ss_dssp EE------EETTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHHHHHHHCST---T--EEEEEE
T ss_pred cE------EecCceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHHHhhhhccc---CcceEEeec
Confidence 10 0134556666663321 11111 24578999999887754333333322222221 122224444
Q ss_pred c--CchhHHHHHHHhc
Q 008207 303 T--LPSWVKHISTKFL 316 (574)
Q Consensus 303 T--~~~~~~~~~~~~~ 316 (574)
| ...+...+.....
T Consensus 136 p~~~~~~~~~~~~~~~ 151 (384)
T PF03237_consen 136 PPNPGGWFYEIFQRNL 151 (384)
T ss_dssp ---SSSHHHHHHHHHH
T ss_pred CCCCCCceeeeeehhh
Confidence 3 3445666666665
No 452
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=87.63 E-value=7 Score=37.55 Aligned_cols=46 Identities=17% Similarity=0.040 Sum_probs=24.9
Q ss_pred cEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEe
Q 008207 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194 (574)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~ 194 (574)
-.++.|+.|+|||...+-.++... .+..-.........+.++||++
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va-~G~~~~g~~~~~~~~~~Vlyi~ 48 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA-LGKNLFGGGLKVTEPGRVVYLS 48 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh-cCccccCCccccCCCceEEEEE
Confidence 368899999999986544444322 2211100001112345688888
No 453
>PHA00350 putative assembly protein
Probab=87.61 E-value=2 Score=44.37 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=19.6
Q ss_pred EEEEccCCChhHHHhHH-HHHHHHhCC
Q 008207 149 LVGRARTGQGKTLAFVL-PILESLTNG 174 (574)
Q Consensus 149 vi~~a~TGsGKTla~~l-pil~~l~~~ 174 (574)
.++.|..|||||+..+- -++..+..+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~G 30 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDG 30 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCC
Confidence 47889999999997654 466666655
No 454
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=87.57 E-value=1.6 Score=48.34 Aligned_cols=56 Identities=23% Similarity=0.297 Sum_probs=40.9
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHH--HHHHHHHHHHHhhCC
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE--LAKQVHEDFDVYGGA 213 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptre--La~Qv~~~~~~~~~~ 213 (574)
..+++++.|+||+|||..+.+-+.+.+..+. .++++=|-.. |...+...++..+..
T Consensus 175 ~~~H~lv~G~TGsGKT~l~~~l~~q~i~~g~-------------~viv~DpKgD~~l~~~~~~~~~~~G~~ 232 (634)
T TIGR03743 175 RVGHTLVLGTTGVGKTRLAELLITQDIRRGD-------------VVIVIDPKGDADLKRRMRAEAKRAGRP 232 (634)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHcCC-------------eEEEEeCCCchHHHHHHHHHHHHhCCC
Confidence 3578999999999999887666666665432 3778878764 777777777766543
No 455
>PRK09354 recA recombinase A; Provisional
Probab=87.54 E-value=1.5 Score=44.38 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=30.3
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHH
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~ 201 (574)
.|.-+.+.+|+|||||...+..+.+....+. .++++..-..+-.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~-------------~~~yId~E~s~~~ 102 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGG-------------TAAFIDAEHALDP 102 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-------------cEEEECCccchHH
Confidence 4567889999999999876666665554432 3788776554443
No 456
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=87.52 E-value=1.5 Score=44.55 Aligned_cols=64 Identities=19% Similarity=0.235 Sum_probs=39.9
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHH-hcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHH
Q 008207 121 REKLKSKGIESLFPIQAMTFDMV-LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTREL 199 (574)
Q Consensus 121 ~~~l~~~g~~~~~~~Q~~~i~~i-l~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreL 199 (574)
+..|.+.|+ +++.+...+..+ ..+++++++++||||||... -.++..+.. ..+.+++--+.||
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i~~-------------~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALVAP-------------DERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccCCC-------------CCcEEEECCccee
Confidence 455556665 445666666554 46789999999999999743 223332221 1246777777776
Q ss_pred H
Q 008207 200 A 200 (574)
Q Consensus 200 a 200 (574)
.
T Consensus 218 ~ 218 (340)
T TIGR03819 218 R 218 (340)
T ss_pred c
Confidence 3
No 457
>PRK13764 ATPase; Provisional
Probab=87.51 E-value=1.2 Score=48.49 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=20.5
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~ 172 (574)
.++.++++|+||||||.. +..++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 467899999999999974 344555554
No 458
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=87.48 E-value=2 Score=48.98 Aligned_cols=18 Identities=33% Similarity=0.281 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCChhHHH
Q 008207 145 DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla 162 (574)
.+..+++.||+|+|||..
T Consensus 346 ~~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSL 363 (775)
T ss_pred CCceEEEECCCCCCHHHH
Confidence 345699999999999975
No 459
>PRK09087 hypothetical protein; Validated
Probab=87.45 E-value=2.3 Score=40.60 Aligned_cols=39 Identities=15% Similarity=0.084 Sum_probs=23.6
Q ss_pred EEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCch
Q 008207 264 FRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 264 ~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~ 306 (574)
+|++|++|.+. .-...+-.++..+... .. .++++++.++
T Consensus 90 ~l~iDDi~~~~--~~~~~lf~l~n~~~~~-g~-~ilits~~~p 128 (226)
T PRK09087 90 PVLIEDIDAGG--FDETGLFHLINSVRQA-GT-SLLMTSRLWP 128 (226)
T ss_pred eEEEECCCCCC--CCHHHHHHHHHHHHhC-CC-eEEEECCCCh
Confidence 78999999762 2245566677666552 23 4555665433
No 460
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=87.43 E-value=7 Score=45.24 Aligned_cols=19 Identities=26% Similarity=0.193 Sum_probs=15.9
Q ss_pred CCcEEEEccCCChhHHHhH
Q 008207 146 GSDLVGRARTGQGKTLAFV 164 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~ 164 (574)
..+.++.||+|+|||...-
T Consensus 194 ~~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 3689999999999997643
No 461
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=87.38 E-value=1.1 Score=44.95 Aligned_cols=17 Identities=29% Similarity=0.251 Sum_probs=14.5
Q ss_pred CcEEEEccCCChhHHHh
Q 008207 147 SDLVGRARTGQGKTLAF 163 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (574)
.++++.||+|+|||...
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999753
No 462
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=87.37 E-value=1.2 Score=43.01 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=28.6
Q ss_pred CCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCc
Q 008207 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (574)
Q Consensus 260 ~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~ 305 (574)
...+++|+|+||+|. ......+++.+..++..-++++.++-+
T Consensus 87 ~~~KV~II~~ae~m~----~~AaNaLLK~LEEPp~~t~fiLit~~~ 128 (261)
T PRK05818 87 NGKKIYIIYGIEKLN----KQSANSLLKLIEEPPKNTYGIFTTRNE 128 (261)
T ss_pred CCCEEEEeccHhhhC----HHHHHHHHHhhcCCCCCeEEEEEECCh
Confidence 458999999999985 455677777776654444555555533
No 463
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=87.24 E-value=8 Score=39.26 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=31.2
Q ss_pred CCceEEEecCchhhhcCC--cHHHHHHHHHhccCccCceEEEEeccCchhH
Q 008207 260 SSLKFRVLDEADEMLRMG--FVEDVELILGKVEDANKVQTLLFSATLPSWV 308 (574)
Q Consensus 260 ~~~~~lVlDEah~~l~~~--~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~ 308 (574)
..--++|+|-||.+-|++ ....+-.+-..++. +.-.++||+++.+..
T Consensus 114 d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~--~~i~iils~~~~e~~ 162 (438)
T KOG2543|consen 114 DQKVFLILDNADALRDMDAILLQCLFRLYELLNE--PTIVIILSAPSCEKQ 162 (438)
T ss_pred CceEEEEEcCHHhhhccchHHHHHHHHHHHHhCC--CceEEEEeccccHHH
Confidence 345689999999998877 33334444444444 345678899987643
No 464
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=87.15 E-value=0.56 Score=51.93 Aligned_cols=50 Identities=20% Similarity=0.121 Sum_probs=38.4
Q ss_pred CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHh
Q 008207 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (574)
..++++.||||||||..+++|-+-.... .++|+=|.-|+........++.
T Consensus 144 ~~hvLviApTrSGKgvg~VIPnLL~~~~---------------S~VV~D~KGEl~~~Ta~~R~~~ 193 (663)
T PRK13876 144 PEHVLCFAPTRSGKGVGLVVPTLLTWPG---------------SAIVHDIKGENWQLTAGFRARF 193 (663)
T ss_pred CceEEEEecCCCCcceeEehhhHHhCCC---------------CEEEEeCcchHHHHHHHHHHhC
Confidence 4689999999999999999997644321 2788889989887766655544
No 465
>PRK10263 DNA translocase FtsK; Provisional
Probab=87.12 E-value=3.1 Score=48.87 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=19.5
Q ss_pred CcEEEEccCCChhHHHhHHHHHHHHh
Q 008207 147 SDLVGRARTGQGKTLAFVLPILESLT 172 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~ 172 (574)
.+++|.|.||||||.+.-..|+..+.
T Consensus 1011 PHLLIAGaTGSGKSv~LntLIlSLl~ 1036 (1355)
T PRK10263 1011 PHLLVAGTTGSGKSVGVNAMILSMLY 1036 (1355)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999875444544443
No 466
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=87.05 E-value=2.5 Score=40.43 Aligned_cols=31 Identities=19% Similarity=0.173 Sum_probs=27.2
Q ss_pred CceEEEecCchhhhcCCcHHHHHHHHHhccC
Q 008207 261 SLKFRVLDEADEMLRMGFVEDVELILGKVED 291 (574)
Q Consensus 261 ~~~~lVlDEah~~l~~~~~~~~~~il~~l~~ 291 (574)
+-+++|+||.=.++|..-...+..++..++.
T Consensus 156 ~P~iliLDEPta~LD~~~~~~l~~~l~~L~~ 186 (235)
T COG1122 156 GPEILLLDEPTAGLDPKGRRELLELLKKLKE 186 (235)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 4689999999999998888888888888876
No 467
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=87.02 E-value=1.2 Score=43.59 Aligned_cols=54 Identities=26% Similarity=0.334 Sum_probs=38.9
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhC
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG 212 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~ 212 (574)
.|+.+++.|++|||||+-..-.+.+.+..+. .+++++ +.+...++.+.+..++.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge-------------~vlyvs-~~e~~~~l~~~~~~~g~ 75 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGE-------------PVLYVS-TEESPEELLENARSFGW 75 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCC-------------cEEEEE-ecCCHHHHHHHHHHcCC
Confidence 5788999999999999866666665555532 266664 55778888888876653
No 468
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=86.97 E-value=0.56 Score=44.51 Aligned_cols=58 Identities=12% Similarity=0.240 Sum_probs=31.5
Q ss_pred ChHHHHHhHhcCCccCCCceEEEecCchhhh-c----CCcHHHHHHHHHhccCccCceEEEEeccCch
Q 008207 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEML-R----MGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 244 Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l-~----~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~ 306 (574)
+...+++.+...... -+||+||+|.+. . ..+...+..++....... ...++++++-..
T Consensus 105 ~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~v~~~S~~~ 167 (234)
T PF01637_consen 105 ALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQ-NVSIVITGSSDS 167 (234)
T ss_dssp -HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----T-TEEEEEEESSHH
T ss_pred HHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccC-CceEEEECCchH
Confidence 334455555543222 689999999998 2 235556666666643332 344556776543
No 469
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=86.96 E-value=8 Score=37.07 Aligned_cols=32 Identities=31% Similarity=0.411 Sum_probs=22.6
Q ss_pred HHHhcCC-cEEEEccCCChhHHHhHHHHHHHHhC
Q 008207 141 DMVLDGS-DLVGRARTGQGKTLAFVLPILESLTN 173 (574)
Q Consensus 141 ~~il~~~-dvi~~a~TGsGKTla~~lpil~~l~~ 173 (574)
+.+..|+ -+.++|+-|||||...- .+++.+..
T Consensus 45 ~~i~d~qg~~~vtGevGsGKTv~~R-al~~s~~~ 77 (269)
T COG3267 45 AAIADGQGILAVTGEVGSGKTVLRR-ALLASLNE 77 (269)
T ss_pred HHHhcCCceEEEEecCCCchhHHHH-HHHHhcCC
Confidence 4455566 68899999999998765 45544443
No 470
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=86.94 E-value=8.4 Score=41.67 Aligned_cols=126 Identities=17% Similarity=0.171 Sum_probs=81.5
Q ss_pred CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHH----HhhCCCCceEEEEe
Q 008207 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD----VYGGAVGLTSCCLY 222 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~----~~~~~~~~~~~~~~ 222 (574)
+-.+.--|---|||. |+.|++..++.. -.+.++.|++.-|.-+.-|.+++. +|..... +...
T Consensus 203 kaTVFLVPRRHGKTW-f~VpiIsllL~s----------~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~--vi~~- 268 (668)
T PHA03372 203 KATVFLVPRRHGKTW-FIIPIISFLLKN----------IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKH--TIEN- 268 (668)
T ss_pred cceEEEecccCCcee-hHHHHHHHHHHh----------hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccc--eeee-
Confidence 456666788899996 577777777653 245679999999998888887764 2322111 1111
Q ss_pred CCcchHHHHHHhcCCCcEEEEChHHHH-----HhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceE
Q 008207 223 GGAPYHAQEFKLKKGIDVVIGTPGRIK-----DHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297 (574)
Q Consensus 223 gg~~~~~~~~~l~~~~~IlV~Tp~~l~-----~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ 297 (574)
.+-.|.+.-||.=- .-...+.+.=.++.++++||||-+- .+.+..|+..+... +.++
T Consensus 269 -------------k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~-~~Ki 330 (668)
T PHA03372 269 -------------KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQN-TTKI 330 (668)
T ss_pred -------------cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhccc-CceE
Confidence 12245555444321 1112234455678999999999764 56678888887754 5788
Q ss_pred EEEeccC
Q 008207 298 LLFSATL 304 (574)
Q Consensus 298 ll~SAT~ 304 (574)
|+.|.|-
T Consensus 331 IfISS~N 337 (668)
T PHA03372 331 IFISSTN 337 (668)
T ss_pred EEEeCCC
Confidence 8888884
No 471
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=86.68 E-value=0.65 Score=51.04 Aligned_cols=49 Identities=29% Similarity=0.308 Sum_probs=37.9
Q ss_pred CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHh
Q 008207 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (574)
.++++.||||||||..+++|-+ +.... .++|+=|.-|++......-++.
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnL--L~~~g-------------S~VV~DpKgE~~~~Ta~~R~~~ 260 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTA--LKYGG-------------PLVCLDPSTEVAPMVCEHRRQA 260 (623)
T ss_pred ceEEEEeCCCCCccceeehhhh--hcCCC-------------CEEEEEChHHHHHHHHHHHHHc
Confidence 5899999999999999999964 32221 2899999999988776655444
No 472
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=86.66 E-value=1.4 Score=49.87 Aligned_cols=58 Identities=24% Similarity=0.339 Sum_probs=48.4
Q ss_pred CCCeEEEEecChHHHHHHHHhCC---------CC-ccccccCCHHHHHHHHHHHhCCCccEEEEeccc
Q 008207 362 SGGRTIIFTETKESASQLADLLP---------GA-RALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419 (574)
Q Consensus 362 ~~~~~lVF~~t~~~~~~l~~~l~---------~~-~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~ 419 (574)
.+.++++.++|..-+.+.++.|. .+ ..+||.|+..++...+++|.+|.++|||+|..+
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 56899999999887777776664 11 139999999999999999999999999999764
No 473
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=86.64 E-value=3.6 Score=43.58 Aligned_cols=27 Identities=19% Similarity=0.047 Sum_probs=18.8
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHH
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESL 171 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l 171 (574)
.|.=+++.|+||+|||...+--+.+..
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a 220 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAA 220 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHH
Confidence 455688999999999975444444433
No 474
>PRK04841 transcriptional regulator MalT; Provisional
Probab=86.61 E-value=5.1 Score=46.83 Aligned_cols=44 Identities=16% Similarity=0.294 Sum_probs=33.1
Q ss_pred CceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCch
Q 008207 261 SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (574)
Q Consensus 261 ~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~ 306 (574)
.--+||||++|.+.+......+..++...+. ...+++.|-+.|+
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~--~~~lv~~sR~~~~ 164 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPE--NLTLVVLSRNLPP 164 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCC--CeEEEEEeCCCCC
Confidence 3458999999988655556678888888776 6788888877654
No 475
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=86.43 E-value=0.62 Score=51.45 Aligned_cols=50 Identities=28% Similarity=0.221 Sum_probs=37.9
Q ss_pred CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHh
Q 008207 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (574)
..++++.|+||||||..+++|-+- .... -++|+=|..|+........++.
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL--~~~g-------------S~VV~DpKgEl~~~Ta~~R~~~ 273 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTAL--KWGG-------------PLVVLDPSTEVAPMVSEHRRDA 273 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhh--cCCC-------------CEEEEeCcHHHHHHHHHHHHHC
Confidence 358999999999999999999653 2221 2788889999988766655443
No 476
>PHA00012 I assembly protein
Probab=86.40 E-value=2.6 Score=41.95 Aligned_cols=26 Identities=38% Similarity=0.505 Sum_probs=22.2
Q ss_pred EEEEccCCChhHHHhHHHHHHHHhCC
Q 008207 149 LVGRARTGQGKTLAFVLPILESLTNG 174 (574)
Q Consensus 149 vi~~a~TGsGKTla~~lpil~~l~~~ 174 (574)
-++.|..|||||+..+.-+...+..+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcC
Confidence 47889999999998888888888776
No 477
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.38 E-value=2.4 Score=46.47 Aligned_cols=41 Identities=27% Similarity=0.242 Sum_probs=30.1
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEec
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SA 302 (574)
+++-.++|+|||---||..-...+...+..+.. + ++++.=|
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~-rTVlvIA 660 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQ--G-RTVLVIA 660 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--C-CeEEEEe
Confidence 567789999999998888767777777766655 3 4555444
No 478
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=86.35 E-value=2.2 Score=46.86 Aligned_cols=56 Identities=23% Similarity=0.220 Sum_probs=43.5
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcH--HHHHHHHHHHHHhhCC
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR--ELAKQVHEDFDVYGGA 213 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr--eLa~Qv~~~~~~~~~~ 213 (574)
...+.++.|+||+|||..+.+-+.+.+..+. .++++=|-. ++...++..++..+..
T Consensus 179 ~~gHtlV~GtTGsGKT~l~~~li~q~i~~g~-------------~vi~fDpkgD~el~~~~~~~~~~~GR~ 236 (643)
T TIGR03754 179 RVGHTLVLGTTRVGKTRLAELLITQDIRRGD-------------VVIVFDPKGDADLLKRMYAEAKRAGRL 236 (643)
T ss_pred ccCceEEECCCCCCHHHHHHHHHHHHHHcCC-------------eEEEEeCCCCHHHHHHHHHHHHHhCCC
Confidence 3578999999999999988877777776442 478888887 6777777777777664
No 479
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=86.33 E-value=1.6 Score=41.41 Aligned_cols=53 Identities=21% Similarity=0.235 Sum_probs=35.7
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhh
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~ 211 (574)
.|.-+++.|++|+|||...+..+.+.+..+. .+++++-. +-..|+.+.+..++
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~-------------~~~y~s~e-~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGE-------------KAMYISLE-EREERILGYAKSKG 67 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCC-------------eEEEEECC-CCHHHHHHHHHHcC
Confidence 3567899999999999755555555554432 37777554 56777777776654
No 480
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=86.31 E-value=1.2 Score=48.44 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCChhHH
Q 008207 144 LDGSDLVGRARTGQGKTL 161 (574)
Q Consensus 144 l~~~dvi~~a~TGsGKTl 161 (574)
..|+-+.+.|++|||||.
T Consensus 359 ~~G~~vaIvG~SGsGKST 376 (529)
T TIGR02868 359 PPGERVAILGPSGSGKST 376 (529)
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 368889999999999997
No 481
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=86.07 E-value=3.4 Score=45.42 Aligned_cols=73 Identities=19% Similarity=0.364 Sum_probs=55.9
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHh----cCCCcEEEEChHHHHHhHhcCCccCCCce
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~ 263 (574)
.++||.|+|+..+.++++.+... ++.+..++|+.+.......+ ....+|+||| +.+.+ .+++.+++
T Consensus 258 ~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~ar-GIDip~V~ 327 (572)
T PRK04537 258 ARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAAR-GLHIDGVK 327 (572)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhhc-CCCccCCC
Confidence 46999999999999999988654 57899999998876554433 3568999999 34444 56899999
Q ss_pred EEEecCc
Q 008207 264 FRVLDEA 270 (574)
Q Consensus 264 ~lVlDEa 270 (574)
+||.-..
T Consensus 328 ~VInyd~ 334 (572)
T PRK04537 328 YVYNYDL 334 (572)
T ss_pred EEEEcCC
Confidence 9886543
No 482
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=85.91 E-value=7 Score=36.35 Aligned_cols=48 Identities=23% Similarity=0.136 Sum_probs=32.1
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCc-cCceEEEEeccCch
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA-NKVQTLLFSATLPS 306 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~-~~~q~ll~SAT~~~ 306 (574)
+.+-+++++||...-++......+..++..+... ...+++++|.--..
T Consensus 129 ~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~ 177 (198)
T cd03276 129 VMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS 177 (198)
T ss_pred ccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc
Confidence 4677899999999988877676676666554321 13467777764333
No 483
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=85.65 E-value=0.79 Score=44.87 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=21.1
Q ss_pred HHHHHHhcCCcEEEEccCCChhHHHh
Q 008207 138 MTFDMVLDGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 138 ~~i~~il~~~dvi~~a~TGsGKTla~ 163 (574)
.++..+..|.++++.|++|+|||...
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHH
Confidence 34455668999999999999999854
No 484
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=85.57 E-value=2.3 Score=47.67 Aligned_cols=71 Identities=23% Similarity=0.185 Sum_probs=55.6
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHh
Q 008207 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (574)
Q Consensus 131 ~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (574)
.+++-|.+++... ...++|.|..|||||.+..--+...+...... .-++|.++=|+-.|.++.+.+..+
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~---------p~~Il~vTFTnkAA~em~~Rl~~~ 70 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVD---------PEQILAITFTNKAAAEMRERLLKL 70 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcC---------hHHeeeeechHHHHHHHHHHHHHH
Confidence 5789999999776 67899999999999998776666666554321 224899999999999999888776
Q ss_pred hC
Q 008207 211 GG 212 (574)
Q Consensus 211 ~~ 212 (574)
..
T Consensus 71 ~~ 72 (655)
T COG0210 71 LG 72 (655)
T ss_pred hC
Confidence 54
No 485
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=85.42 E-value=3.7 Score=47.30 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=13.8
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
.+++.||||+|||..+
T Consensus 598 ~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 598 VFLLVGPSGVGKTETA 613 (852)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3899999999999854
No 486
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.27 E-value=2 Score=38.26 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=30.1
Q ss_pred CCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCc
Q 008207 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (574)
Q Consensus 260 ~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~ 305 (574)
...+++++||...-+|......+..++..+... . ++++++.--.
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~-~tii~~sh~~ 140 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEE-G-RTVIIVTHDP 140 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-C-CEEEEEeCCH
Confidence 346899999999888877777777777766542 2 3555554433
No 487
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=85.26 E-value=5.6 Score=45.25 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCChhHHH
Q 008207 145 DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla 162 (574)
.++.+++.||+|+|||+.
T Consensus 211 ~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCceEEEECCCCCChHHH
Confidence 457899999999999974
No 488
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=85.23 E-value=3.2 Score=39.37 Aligned_cols=27 Identities=22% Similarity=0.100 Sum_probs=19.9
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHH
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESL 171 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l 171 (574)
.|.-+.+.|++|+|||...+..+...+
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~ 44 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQ 44 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhh
Confidence 356788999999999986555444443
No 489
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=84.95 E-value=2 Score=44.10 Aligned_cols=29 Identities=28% Similarity=0.205 Sum_probs=21.3
Q ss_pred hcCCcEEEEccCCChhHHHhHHHHHHHHhC
Q 008207 144 LDGSDLVGRARTGQGKTLAFVLPILESLTN 173 (574)
Q Consensus 144 l~~~dvi~~a~TGsGKTla~~lpil~~l~~ 173 (574)
-.|+..++.||.|+|||.. +--+.+.+..
T Consensus 167 GkGQR~lIvgppGvGKTTL-aK~Ian~I~~ 195 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVL-LQNIANSITT 195 (416)
T ss_pred ccCceEEEeCCCCCChhHH-HHHHHHHHHh
Confidence 3789999999999999964 3335555543
No 490
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=84.86 E-value=0.93 Score=47.57 Aligned_cols=50 Identities=18% Similarity=0.255 Sum_probs=33.7
Q ss_pred HHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHH
Q 008207 140 FDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ 202 (574)
Q Consensus 140 i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Q 202 (574)
+|.-...+++++.|+||||||.. +..++..+.... .+++|+=|..++...
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~~~------------~~~vi~D~kg~~~~~ 85 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRARG------------DRAIIYDPNGGFVSK 85 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHHHHHhcC------------CCEEEEeCCcchhHh
Confidence 34445578999999999999985 334444443321 248888898876543
No 491
>KOG3089 consensus Predicted DEAD-box-containing helicase [General function prediction only]
Probab=84.86 E-value=0.92 Score=41.74 Aligned_cols=34 Identities=47% Similarity=0.817 Sum_probs=31.0
Q ss_pred CCCcEEEEChHHHHHhHhcCCccCCCceEEEecC
Q 008207 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269 (574)
Q Consensus 236 ~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDE 269 (574)
+..++-||||+|+..++..+.+.++.+.++|+|=
T Consensus 195 ~~v~~gIgTp~Ri~~lv~~~~f~~~~lk~iIlD~ 228 (271)
T KOG3089|consen 195 RVVHLGIGTPGRIKELVKQGGFNLSPLKFIILDW 228 (271)
T ss_pred cceeEeecCcHHHHHHHHhcCCCCCcceeEEeec
Confidence 4578999999999999999999999999999983
No 492
>PRK08006 replicative DNA helicase; Provisional
Probab=84.82 E-value=13 Score=39.65 Aligned_cols=115 Identities=15% Similarity=0.051 Sum_probs=54.2
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEE-eC
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCL-YG 223 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~-~g 223 (574)
.|.=+++.|.+|.|||...+--+.+...... ..++|.+.- --..|+...+-... .++....+ .|
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~~g------------~~V~~fSlE-M~~~ql~~Rlla~~--~~v~~~~i~~~ 287 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQD------------KPVLIFSLE-MPGEQIMMRMLASL--SRVDQTRIRTG 287 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcC------------CeEEEEecc-CCHHHHHHHHHHHh--cCCCHHHhhcC
Confidence 4455788999999999654433333332211 126666532 23444444443221 22222112 23
Q ss_pred CcchHHHHH------HhcCCCcEEEE-----ChHHHHHhHhcCCccCCCceEEEecCchhhh
Q 008207 224 GAPYHAQEF------KLKKGIDVVIG-----TPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (574)
Q Consensus 224 g~~~~~~~~------~l~~~~~IlV~-----Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l 274 (574)
..+...+.+ .+.....+.|- |+..+...+.+-......+++||||=.+.|-
T Consensus 288 ~l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 288 QLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 333222211 22133455553 3444433332211112358899999998774
No 493
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=84.82 E-value=0.72 Score=51.07 Aligned_cols=47 Identities=26% Similarity=0.186 Sum_probs=36.1
Q ss_pred CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHH
Q 008207 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~ 207 (574)
..++++.|+||||||..+++|-+-.. .. .++|+=|-.|+..-.+...
T Consensus 175 ~~HvlviapTgSGKgvg~ViPnLL~~--~~-------------S~VV~D~KGE~~~~Tag~R 221 (636)
T PRK13880 175 PEHVLTYAPTRSGKGVGLVVPTLLSW--GH-------------SSVITDLKGELWALTAGWR 221 (636)
T ss_pred CceEEEEecCCCCCceEEEccchhhC--CC-------------CEEEEeCcHHHHHHHHHHH
Confidence 36799999999999999999987432 11 2899999999976555443
No 494
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=84.79 E-value=7.2 Score=42.83 Aligned_cols=94 Identities=19% Similarity=0.316 Sum_probs=56.2
Q ss_pred CCcHHHHHHHHHHh--------cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHH
Q 008207 131 SLFPIQAMTFDMVL--------DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ 202 (574)
Q Consensus 131 ~~~~~Q~~~i~~il--------~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Q 202 (574)
-+..+-..++..+. +|+-+++.||+|-|||-. +..
T Consensus 415 gm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI-------------------------------------~kS 457 (906)
T KOG2004|consen 415 GMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSI-------------------------------------AKS 457 (906)
T ss_pred chHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccH-------------------------------------HHH
Confidence 45566677776654 467799999999999953 222
Q ss_pred HHHHHH-HhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEE-EChHHHHHhHhcCCccCCCceEEEecCchhhh
Q 008207 203 VHEDFD-VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVI-GTPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (574)
Q Consensus 203 v~~~~~-~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV-~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l 274 (574)
|++.+. +|. .+ -.||...... ++...+-.| +-||++.+.|.+-... + -++.|||+|.+.
T Consensus 458 IA~ALnRkFf---Rf----SvGG~tDvAe---IkGHRRTYVGAMPGkiIq~LK~v~t~--N-PliLiDEvDKlG 518 (906)
T KOG2004|consen 458 IARALNRKFF---RF----SVGGMTDVAE---IKGHRRTYVGAMPGKIIQCLKKVKTE--N-PLILIDEVDKLG 518 (906)
T ss_pred HHHHhCCceE---EE----eccccccHHh---hcccceeeeccCChHHHHHHHhhCCC--C-ceEEeehhhhhC
Confidence 222221 111 11 2355543332 333344444 5599999999763321 1 268899999986
No 495
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=84.66 E-value=14 Score=36.99 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=30.9
Q ss_pred HHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCc
Q 008207 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (574)
Q Consensus 247 ~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~ 305 (574)
.|+..+..+....+.--++|+||.|-.......-.+-.++...... ..+++++--|-.
T Consensus 123 ~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~-r~Piciig~Ttr 180 (408)
T KOG2228|consen 123 KLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSA-RAPICIIGVTTR 180 (408)
T ss_pred HHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhc-CCCeEEEEeecc
Confidence 3455555555444444577899999766555444455555544321 223444444433
No 496
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=84.37 E-value=0.87 Score=33.39 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCChhHHH
Q 008207 145 DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla 162 (574)
.|...++.+++|||||..
T Consensus 22 ~g~~tli~G~nGsGKSTl 39 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTL 39 (62)
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 355799999999999984
No 497
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=84.31 E-value=1.7 Score=43.72 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=17.4
Q ss_pred HhcCCcEEEEccCCChhHHH
Q 008207 143 VLDGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 143 il~~~dvi~~a~TGsGKTla 162 (574)
+..+.+++++|+||||||..
T Consensus 141 v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH
Confidence 44788999999999999974
No 498
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=84.24 E-value=3.6 Score=44.18 Aligned_cols=49 Identities=16% Similarity=0.136 Sum_probs=30.9
Q ss_pred CCceEEEecCchhhhc-------CCcHHHHHHHHHhccCc-cCceEEEEeccCchhH
Q 008207 260 SSLKFRVLDEADEMLR-------MGFVEDVELILGKVEDA-NKVQTLLFSATLPSWV 308 (574)
Q Consensus 260 ~~~~~lVlDEah~~l~-------~~~~~~~~~il~~l~~~-~~~q~ll~SAT~~~~~ 308 (574)
+.-.+|++||.|.|.- +.-...+..++..+... ...++.++-||-.+++
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDi 659 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDI 659 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcc
Confidence 3456889999999852 12334455666655433 2457788899965543
No 499
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=84.05 E-value=14 Score=42.76 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=20.6
Q ss_pred HHHHHHHHh----c--CCcEEEEccCCChhHHHh
Q 008207 136 QAMTFDMVL----D--GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 136 Q~~~i~~il----~--~~dvi~~a~TGsGKTla~ 163 (574)
|...|..+. . ..++++.||.|+|||...
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 665555543 2 358999999999999854
No 500
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.92 E-value=5 Score=44.28 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=29.4
Q ss_pred CCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHH---hcCCcEEEEccCCChhHHHh
Q 008207 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMV---LDGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 105 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i---l~~~dvi~~a~TGsGKTla~ 163 (574)
..-|..++++-.++..++.+... .-+.. ..++-+++.||+|+|||.++
T Consensus 77 KyrP~~ldel~~~~~ki~~l~~~-----------l~~~~~~~~~~~illL~GP~GsGKTTl~ 127 (637)
T TIGR00602 77 KYKPETQHELAVHKKKIEEVETW-----------LKAQVLENAPKRILLITGPSGCGKSTTI 127 (637)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHH-----------HHhcccccCCCcEEEEECCCCCCHHHHH
Confidence 34456677777777666654422 11111 12344899999999999854
Done!