Query 008207
Match_columns 574
No_of_seqs 451 out of 4036
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 20:42:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008207.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008207hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 4.4E-64 1.5E-68 529.6 43.6 361 107-477 54-420 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 1.7E-59 5.7E-64 493.3 41.6 368 107-477 13-395 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 9.9E-60 3.4E-64 494.0 39.5 365 107-487 35-405 (410)
4 3sqw_A ATP-dependent RNA helic 100.0 1.1E-58 3.7E-63 506.5 34.7 375 107-488 15-421 (579)
5 1s2m_A Putative ATP-dependent 100.0 2.2E-57 7.5E-62 474.6 41.1 364 107-487 19-387 (400)
6 3fmp_B ATP-dependent RNA helic 100.0 6.3E-60 2.1E-64 505.4 22.2 368 108-494 91-476 (479)
7 3eiq_A Eukaryotic initiation f 100.0 1.4E-57 4.6E-62 478.3 37.4 365 107-487 38-409 (414)
8 1xti_A Probable ATP-dependent 100.0 1.5E-56 5.1E-61 466.7 40.7 365 108-487 7-380 (391)
9 3i5x_A ATP-dependent RNA helic 100.0 1.5E-57 5.1E-62 496.9 34.6 370 109-485 68-469 (563)
10 3fht_A ATP-dependent RNA helic 100.0 2.9E-56 1E-60 467.7 40.2 369 107-494 23-409 (412)
11 3pey_A ATP-dependent RNA helic 100.0 8.6E-56 2.9E-60 461.2 42.2 367 108-494 4-387 (395)
12 1hv8_A Putative ATP-dependent 100.0 3.2E-55 1.1E-59 452.3 41.5 355 109-486 6-366 (367)
13 1fuu_A Yeast initiation factor 100.0 1.1E-56 3.8E-61 468.1 24.7 363 108-487 20-388 (394)
14 2z0m_A 337AA long hypothetical 100.0 1.5E-53 5E-58 434.7 39.3 335 116-478 1-335 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 1.6E-51 5.4E-56 446.4 32.6 333 107-466 19-374 (591)
16 3fho_A ATP-dependent RNA helic 100.0 1.9E-52 6.6E-57 449.2 24.3 364 110-493 120-499 (508)
17 3oiy_A Reverse gyrase helicase 100.0 7.6E-51 2.6E-55 427.0 32.2 340 119-494 9-396 (414)
18 3l9o_A ATP-dependent RNA helic 100.0 3.5E-51 1.2E-55 470.4 31.9 336 108-474 161-607 (1108)
19 1tf5_A Preprotein translocase 100.0 1.5E-51 5E-56 446.5 21.4 321 126-466 79-545 (844)
20 1oyw_A RECQ helicase, ATP-depe 100.0 4.1E-50 1.4E-54 431.1 30.3 331 109-466 2-343 (523)
21 2fsf_A Preprotein translocase 100.0 1.3E-48 4.3E-53 422.2 23.7 322 127-470 71-587 (853)
22 4a2p_A RIG-I, retinoic acid in 100.0 1.7E-47 5.9E-52 416.9 31.1 330 127-466 3-508 (556)
23 4ddu_A Reverse gyrase; topoiso 100.0 5.6E-47 1.9E-51 435.4 33.1 339 126-500 74-529 (1104)
24 3tbk_A RIG-I helicase domain; 100.0 4E-47 1.4E-51 413.8 28.7 327 130-466 3-507 (555)
25 2va8_A SSO2462, SKI2-type heli 100.0 1.9E-46 6.3E-51 420.0 33.4 348 108-483 7-425 (715)
26 2zj8_A DNA helicase, putative 100.0 6.1E-47 2.1E-51 423.7 29.3 349 110-486 2-406 (720)
27 2ykg_A Probable ATP-dependent 100.0 1.2E-47 4.1E-52 429.2 21.2 336 121-466 3-516 (696)
28 2p6r_A Afuhel308 helicase; pro 100.0 5.8E-47 2E-51 422.7 26.2 332 110-467 2-389 (702)
29 1gku_B Reverse gyrase, TOP-RG; 100.0 1.1E-46 3.9E-51 433.3 28.2 336 125-496 52-488 (1054)
30 1nkt_A Preprotein translocase 100.0 6E-47 2.1E-51 409.3 23.8 324 126-469 107-620 (922)
31 4a2q_A RIG-I, retinoic acid in 100.0 1.1E-45 3.7E-50 417.6 31.5 331 126-466 243-749 (797)
32 2xgj_A ATP-dependent RNA helic 100.0 1.8E-44 6E-49 411.4 36.1 309 126-466 82-499 (1010)
33 4a2w_A RIG-I, retinoic acid in 100.0 1.2E-44 4.1E-49 413.3 28.2 331 126-466 243-749 (936)
34 1wp9_A ATP-dependent RNA helic 100.0 2.1E-43 7.3E-48 377.5 30.5 319 131-466 9-475 (494)
35 4a4z_A Antiviral helicase SKI2 100.0 6.2E-43 2.1E-47 398.8 29.4 308 127-465 36-491 (997)
36 4gl2_A Interferon-induced heli 100.0 1.1E-43 3.8E-48 397.3 21.0 327 130-466 6-519 (699)
37 1gm5_A RECG; helicase, replica 100.0 1.4E-42 4.9E-47 383.9 22.9 316 118-466 356-697 (780)
38 4f92_B U5 small nuclear ribonu 100.0 1E-41 3.5E-46 404.8 31.3 338 116-472 911-1315(1724)
39 2whx_A Serine protease/ntpase/ 100.0 4E-43 1.4E-47 381.7 13.3 310 114-477 155-493 (618)
40 2eyq_A TRCF, transcription-rep 100.0 1.2E-40 4.1E-45 385.4 34.4 320 113-466 585-922 (1151)
41 4f92_B U5 small nuclear ribonu 100.0 2.3E-41 7.9E-46 401.8 27.6 336 128-473 76-481 (1724)
42 3o8b_A HCV NS3 protease/helica 100.0 2.8E-42 9.6E-47 371.4 13.8 305 124-491 210-544 (666)
43 2jlq_A Serine protease subunit 100.0 1E-41 3.4E-46 360.1 17.0 285 128-466 1-311 (451)
44 2oca_A DAR protein, ATP-depend 100.0 7.7E-41 2.6E-45 360.5 20.5 311 129-464 111-453 (510)
45 2xau_A PRE-mRNA-splicing facto 100.0 1.9E-40 6.4E-45 369.5 24.0 329 107-466 70-443 (773)
46 2fwr_A DNA repair protein RAD2 100.0 2.4E-40 8.3E-45 353.1 20.7 295 130-466 92-454 (472)
47 2wv9_A Flavivirin protease NS2 100.0 6.9E-42 2.3E-46 374.2 8.0 302 123-477 202-548 (673)
48 1yks_A Genome polyprotein [con 100.0 1.1E-41 3.6E-46 358.3 8.1 275 142-477 4-314 (440)
49 3fmo_B ATP-dependent RNA helic 100.0 8.8E-39 3E-43 319.0 23.6 204 107-326 90-298 (300)
50 3fe2_A Probable ATP-dependent 100.0 1E-37 3.5E-42 302.4 26.2 214 106-327 26-239 (242)
51 2z83_A Helicase/nucleoside tri 100.0 4.6E-39 1.6E-43 340.3 14.9 269 140-466 15-313 (459)
52 3rc3_A ATP-dependent RNA helic 100.0 1E-37 3.6E-42 340.0 21.2 297 136-485 145-464 (677)
53 3iuy_A Probable ATP-dependent 100.0 1.5E-36 5.2E-41 291.5 24.1 210 106-323 16-226 (228)
54 1wrb_A DJVLGB; RNA helicase, D 100.0 1.2E-36 4E-41 297.1 23.1 229 107-339 21-251 (253)
55 3ber_A Probable ATP-dependent 100.0 3.1E-36 1.1E-40 292.9 25.8 203 109-324 43-246 (249)
56 1vec_A ATP-dependent RNA helic 100.0 6.8E-36 2.3E-40 282.2 26.3 201 109-322 3-204 (206)
57 3h1t_A Type I site-specific re 100.0 5.6E-37 1.9E-41 335.8 21.6 315 130-465 177-557 (590)
58 1q0u_A Bstdead; DEAD protein, 100.0 2.1E-36 7.3E-41 288.5 22.2 204 109-325 4-211 (219)
59 2v6i_A RNA helicase; membrane, 100.0 6.3E-37 2.1E-41 321.3 20.3 267 145-464 1-289 (431)
60 3bor_A Human initiation factor 100.0 3.9E-36 1.3E-40 290.3 23.4 206 107-325 28-234 (237)
61 3ly5_A ATP-dependent RNA helic 100.0 5E-36 1.7E-40 293.7 23.6 207 108-322 51-260 (262)
62 3dmq_A RNA polymerase-associat 100.0 5.9E-36 2E-40 342.0 27.7 359 130-506 152-656 (968)
63 2oxc_A Probable ATP-dependent 100.0 9.3E-36 3.2E-40 286.3 24.5 204 107-324 22-227 (230)
64 2pl3_A Probable ATP-dependent 100.0 1.8E-35 6.2E-40 285.5 26.0 208 108-325 24-232 (236)
65 2gxq_A Heat resistant RNA depe 100.0 3.3E-35 1.1E-39 277.7 25.2 203 110-324 2-204 (207)
66 1qde_A EIF4A, translation init 100.0 3.6E-35 1.2E-39 281.1 25.0 205 108-326 13-217 (224)
67 1t6n_A Probable ATP-dependent 100.0 6.8E-35 2.3E-39 278.3 23.1 207 104-323 9-218 (220)
68 3jux_A Protein translocase sub 100.0 2.4E-34 8.2E-39 304.5 28.7 315 127-467 72-588 (822)
69 3dkp_A Probable ATP-dependent 100.0 2.8E-34 9.7E-39 278.8 22.2 208 109-327 25-242 (245)
70 1z63_A Helicase of the SNF2/RA 100.0 3.2E-33 1.1E-37 300.2 26.3 308 130-466 36-453 (500)
71 3i32_A Heat resistant RNA depe 100.0 5.7E-33 1.9E-37 274.8 20.2 224 336-563 2-236 (300)
72 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.9E-32 6.4E-37 310.6 22.6 321 130-474 270-717 (1038)
73 3eaq_A Heat resistant RNA depe 100.0 1.8E-31 6.2E-36 252.3 21.3 202 336-541 5-211 (212)
74 1z3i_X Similar to RAD54-like; 100.0 4.7E-30 1.6E-34 282.1 34.8 321 131-466 55-528 (644)
75 3mwy_W Chromo domain-containin 100.0 2.4E-30 8E-35 291.6 30.7 328 130-477 235-698 (800)
76 2ipc_A Preprotein translocase 100.0 7.5E-30 2.6E-34 275.0 30.6 130 127-274 76-215 (997)
77 1c4o_A DNA nucleotide excision 100.0 1.7E-28 5.7E-33 269.6 29.1 162 294-466 380-550 (664)
78 2d7d_A Uvrabc system protein B 100.0 7.3E-28 2.5E-32 264.3 26.0 162 294-466 386-556 (661)
79 2hjv_A ATP-dependent RNA helic 100.0 6E-28 2.1E-32 218.6 17.6 153 332-485 5-162 (163)
80 2rb4_A ATP-dependent RNA helic 100.0 5.5E-28 1.9E-32 221.6 15.8 159 333-492 4-174 (175)
81 1t5i_A C_terminal domain of A 99.9 1.1E-27 3.8E-32 218.7 14.6 152 334-486 3-160 (172)
82 1fuk_A Eukaryotic initiation f 99.9 4E-27 1.4E-31 213.6 15.3 152 335-487 2-159 (165)
83 2p6n_A ATP-dependent RNA helic 99.9 6.3E-27 2.2E-31 217.0 13.9 160 313-477 9-174 (191)
84 2jgn_A DBX, DDX3, ATP-dependen 99.9 6.2E-27 2.1E-31 216.1 13.4 148 332-479 15-167 (185)
85 2yjt_D ATP-dependent RNA helic 99.9 4.7E-27 1.6E-31 214.3 0.0 150 336-486 3-158 (170)
86 3b6e_A Interferon-induced heli 99.9 5.2E-25 1.8E-29 208.9 11.4 169 127-303 29-216 (216)
87 3llm_A ATP-dependent RNA helic 99.9 5.6E-24 1.9E-28 204.6 15.9 178 117-316 47-227 (235)
88 2vl7_A XPD; helicase, unknown 99.9 2.6E-23 9E-28 223.8 20.6 300 127-466 4-521 (540)
89 3crv_A XPD/RAD3 related DNA he 99.9 2.2E-20 7.5E-25 201.8 32.4 311 131-466 3-531 (551)
90 1rif_A DAR protein, DNA helica 99.9 1.8E-22 6.3E-27 199.6 12.2 155 130-308 112-266 (282)
91 2fz4_A DNA repair protein RAD2 99.8 8.9E-19 3E-23 168.1 17.0 138 130-306 92-230 (237)
92 4a15_A XPD helicase, ATP-depen 99.8 2.3E-17 7.7E-22 179.6 23.5 84 130-225 2-89 (620)
93 1z5z_A Helicase of the SNF2/RA 99.8 2E-18 6.7E-23 168.6 11.5 122 345-466 93-224 (271)
94 1w36_D RECD, exodeoxyribonucle 99.0 2.1E-09 7.2E-14 116.8 12.2 144 133-302 151-297 (608)
95 3e1s_A Exodeoxyribonuclease V, 98.1 1.3E-05 4.6E-10 86.0 12.7 124 131-300 189-312 (574)
96 4b3f_X DNA-binding protein smu 98.1 7.6E-06 2.6E-10 89.7 10.7 67 131-210 189-256 (646)
97 3upu_A ATP-dependent DNA helic 98.1 2.1E-05 7E-10 82.6 13.2 72 124-207 18-94 (459)
98 2gk6_A Regulator of nonsense t 98.0 3.6E-05 1.2E-09 83.8 13.8 70 129-210 178-247 (624)
99 2xzl_A ATP-dependent helicase 98.0 4E-05 1.4E-09 85.5 12.5 69 130-210 359-427 (802)
100 2wjy_A Regulator of nonsense t 97.9 9.4E-05 3.2E-09 82.4 13.3 69 130-210 355-423 (800)
101 3lfu_A DNA helicase II; SF1 he 97.7 0.0017 5.8E-08 71.1 19.7 71 130-211 8-78 (647)
102 2o0j_A Terminase, DNA packagin 97.4 0.002 6.8E-08 65.1 14.2 71 131-212 163-233 (385)
103 3hgt_A HDA1 complex subunit 3; 97.2 0.0017 5.9E-08 63.3 10.6 116 346-466 107-237 (328)
104 3cpe_A Terminase, DNA packagin 97.1 0.0043 1.5E-07 67.0 13.6 120 131-275 163-287 (592)
105 3ec2_A DNA replication protein 96.8 0.0081 2.8E-07 53.8 10.6 19 145-163 37-55 (180)
106 2orw_A Thymidine kinase; TMTK, 96.7 0.00093 3.2E-08 60.4 3.5 39 146-197 3-41 (184)
107 3vkw_A Replicase large subunit 96.6 0.0079 2.7E-07 61.5 10.2 88 147-277 162-249 (446)
108 1xx6_A Thymidine kinase; NESG, 96.6 0.0057 1.9E-07 55.4 8.2 39 146-197 8-46 (191)
109 1pjr_A PCRA; DNA repair, DNA r 96.5 0.0062 2.1E-07 67.4 9.3 71 130-211 10-80 (724)
110 2b8t_A Thymidine kinase; deoxy 96.5 0.0066 2.3E-07 56.4 8.0 91 145-273 11-101 (223)
111 1a5t_A Delta prime, HOLB; zinc 96.4 0.02 6.9E-07 56.9 11.8 40 132-172 3-49 (334)
112 2j9r_A Thymidine kinase; TK1, 96.2 0.014 4.9E-07 53.4 8.2 40 146-198 28-67 (214)
113 1l8q_A Chromosomal replication 96.1 0.033 1.1E-06 55.0 11.4 18 146-163 37-54 (324)
114 1uaa_A REP helicase, protein ( 96.1 0.0085 2.9E-07 65.8 7.4 80 131-221 2-84 (673)
115 2zpa_A Uncharacterized protein 96.1 0.012 4.2E-07 63.2 8.3 113 131-305 175-289 (671)
116 3te6_A Regulatory protein SIR3 95.9 0.049 1.7E-06 53.4 11.1 26 145-171 44-69 (318)
117 3kl4_A SRP54, signal recogniti 95.8 0.047 1.6E-06 55.9 11.2 55 260-316 178-235 (433)
118 3e2i_A Thymidine kinase; Zn-bi 95.8 0.031 1.1E-06 51.1 8.7 99 145-286 27-125 (219)
119 3bos_A Putative DNA replicatio 95.7 0.027 9.3E-07 52.5 8.3 19 145-163 51-69 (242)
120 2orv_A Thymidine kinase; TP4A 95.5 0.047 1.6E-06 50.5 8.8 40 145-197 18-57 (234)
121 2kjq_A DNAA-related protein; s 95.4 0.0077 2.6E-07 52.2 3.2 19 145-163 35-53 (149)
122 1d2n_A N-ethylmaleimide-sensit 95.3 0.087 3E-06 50.4 10.6 17 147-163 65-81 (272)
123 3u4q_A ATP-dependent helicase/ 95.3 0.028 9.5E-07 66.0 8.3 71 130-209 9-79 (1232)
124 1w4r_A Thymidine kinase; type 95.3 0.045 1.6E-06 49.3 7.8 39 145-196 19-57 (195)
125 2gno_A DNA polymerase III, gam 95.1 0.14 4.8E-06 50.0 11.4 43 259-305 80-122 (305)
126 2v1u_A Cell division control p 95.0 0.073 2.5E-06 53.6 9.4 19 145-163 43-61 (387)
127 2z4s_A Chromosomal replication 94.6 0.21 7.3E-06 51.5 11.8 18 146-163 130-147 (440)
128 3u61_B DNA polymerase accessor 94.5 0.14 4.7E-06 50.4 9.7 29 260-288 104-132 (324)
129 3syl_A Protein CBBX; photosynt 94.5 0.066 2.3E-06 52.2 7.3 18 146-163 67-84 (309)
130 2p65_A Hypothetical protein PF 94.4 0.3 1E-05 43.1 11.0 18 146-163 43-60 (187)
131 2w58_A DNAI, primosome compone 94.4 0.26 8.9E-06 44.5 10.7 25 147-172 55-79 (202)
132 2chg_A Replication factor C sm 94.4 0.36 1.2E-05 43.8 11.8 17 147-163 39-55 (226)
133 1jbk_A CLPB protein; beta barr 94.2 0.81 2.8E-05 40.2 13.5 18 146-163 43-60 (195)
134 1sxj_E Activator 1 40 kDa subu 94.1 0.28 9.4E-06 48.8 11.0 46 106-163 8-53 (354)
135 2qby_B CDC6 homolog 3, cell di 93.9 0.17 5.9E-06 50.8 9.3 18 146-163 45-62 (384)
136 3dm5_A SRP54, signal recogniti 93.9 0.75 2.6E-05 47.0 13.8 132 147-316 101-236 (443)
137 3h4m_A Proteasome-activating n 93.9 0.22 7.7E-06 47.7 9.6 53 108-163 13-68 (285)
138 3pfi_A Holliday junction ATP-d 93.8 0.52 1.8E-05 46.4 12.3 17 147-163 56-72 (338)
139 1njg_A DNA polymerase III subu 93.8 1.9 6.6E-05 39.3 15.8 16 148-163 47-62 (250)
140 1jr3_A DNA polymerase III subu 93.4 0.93 3.2E-05 45.1 13.6 16 148-163 40-55 (373)
141 2w0m_A SSO2452; RECA, SSPF, un 93.3 0.23 7.7E-06 45.9 8.3 20 145-164 22-41 (235)
142 1iqp_A RFCS; clamp loader, ext 93.2 0.32 1.1E-05 47.5 9.6 16 148-163 48-63 (327)
143 1g5t_A COB(I)alamin adenosyltr 93.0 0.46 1.6E-05 42.7 9.2 30 146-175 28-57 (196)
144 3eie_A Vacuolar protein sortin 92.8 0.46 1.6E-05 46.6 10.1 51 107-163 13-68 (322)
145 1fnn_A CDC6P, cell division co 92.8 0.64 2.2E-05 46.6 11.4 16 148-163 46-61 (389)
146 1gm5_A RECG; helicase, replica 92.8 0.18 6E-06 55.9 7.5 86 351-436 405-499 (780)
147 2qby_A CDC6 homolog 1, cell di 92.7 0.26 9E-06 49.3 8.4 18 146-163 45-62 (386)
148 3uk6_A RUVB-like 2; hexameric 92.3 0.74 2.5E-05 45.9 11.1 18 146-163 70-87 (368)
149 1sxj_D Activator 1 41 kDa subu 92.2 0.54 1.8E-05 46.5 9.8 17 147-163 59-75 (353)
150 3vfd_A Spastin; ATPase, microt 92.1 0.34 1.2E-05 49.0 8.3 18 146-163 148-165 (389)
151 3hjh_A Transcription-repair-co 92.1 0.87 3E-05 47.3 11.3 88 145-252 13-117 (483)
152 2hjv_A ATP-dependent RNA helic 91.5 2.2 7.4E-05 36.9 11.8 71 189-269 37-111 (163)
153 3d8b_A Fidgetin-like protein 1 91.3 0.68 2.3E-05 46.1 9.3 19 145-163 116-134 (357)
154 2p6n_A ATP-dependent RNA helic 91.1 1.1 3.9E-05 40.0 9.8 70 189-268 56-129 (191)
155 1fuk_A Eukaryotic initiation f 90.7 2.4 8.4E-05 36.6 11.4 71 189-269 32-106 (165)
156 2rb4_A ATP-dependent RNA helic 90.5 1.8 6E-05 38.0 10.4 69 189-267 36-108 (175)
157 1sxj_A Activator 1 95 kDa subu 90.3 0.46 1.6E-05 50.1 7.3 41 260-304 147-189 (516)
158 2chq_A Replication factor C sm 90.2 1 3.5E-05 43.6 9.3 45 106-163 11-55 (319)
159 3pvs_A Replication-associated 90.1 0.33 1.1E-05 50.1 5.8 17 147-163 51-67 (447)
160 1sxj_C Activator 1 40 kDa subu 89.9 1 3.5E-05 44.4 9.2 16 149-164 49-64 (340)
161 3eaq_A Heat resistant RNA depe 89.9 2.8 9.4E-05 38.1 11.4 69 189-267 33-105 (212)
162 2l8b_A Protein TRAI, DNA helic 89.8 0.6 2E-05 41.2 6.3 119 133-301 36-156 (189)
163 2qp9_X Vacuolar protein sortin 89.7 0.84 2.9E-05 45.4 8.4 18 146-163 84-101 (355)
164 2ehv_A Hypothetical protein PH 89.7 0.48 1.6E-05 44.2 6.2 43 260-304 134-181 (251)
165 1cr0_A DNA primase/helicase; R 89.7 0.37 1.3E-05 46.6 5.6 24 144-167 33-56 (296)
166 2r6a_A DNAB helicase, replicat 89.5 1.4 4.8E-05 45.4 10.1 27 145-171 202-228 (454)
167 1w5s_A Origin recognition comp 89.3 1.5 5.1E-05 44.3 10.1 18 146-163 50-69 (412)
168 1sxj_B Activator 1 37 kDa subu 88.8 1.1 3.8E-05 43.4 8.4 16 148-163 44-59 (323)
169 3lda_A DNA repair protein RAD5 88.6 4.8 0.00017 40.6 13.1 19 146-164 178-196 (400)
170 3hu3_A Transitional endoplasmi 88.5 0.78 2.7E-05 47.8 7.3 19 145-163 237-255 (489)
171 2q6t_A DNAB replication FORK h 88.2 2.1 7.2E-05 43.9 10.4 27 145-171 199-225 (444)
172 1t5i_A C_terminal domain of A 87.9 3 0.0001 36.4 9.8 71 189-269 33-107 (172)
173 1nlf_A Regulatory protein REPA 87.6 2 6.8E-05 40.9 9.2 25 143-167 27-51 (279)
174 2jgn_A DBX, DDX3, ATP-dependen 87.4 1.9 6.6E-05 38.2 8.3 69 189-267 48-120 (185)
175 3co5_A Putative two-component 87.4 0.44 1.5E-05 40.5 3.8 20 143-162 24-43 (143)
176 3n70_A Transport activator; si 87.1 0.47 1.6E-05 40.3 3.9 21 143-163 21-41 (145)
177 4a1f_A DNAB helicase, replicat 86.8 0.54 1.8E-05 46.4 4.6 50 144-207 44-93 (338)
178 1n0w_A DNA repair protein RAD5 86.7 3.5 0.00012 37.9 10.1 24 145-168 23-46 (243)
179 2eyq_A TRCF, transcription-rep 86.3 1.4 4.9E-05 51.0 8.5 78 356-433 645-731 (1151)
180 2z43_A DNA repair and recombin 86.1 1.6 5.6E-05 42.7 7.8 25 145-169 106-130 (324)
181 2d7d_A Uvrabc system protein B 86.0 11 0.00039 40.7 15.0 76 188-273 446-525 (661)
182 2fna_A Conserved hypothetical 84.4 27 0.00092 33.7 16.0 42 245-289 124-168 (357)
183 3i5x_A ATP-dependent RNA helic 84.4 10 0.00035 39.9 13.6 75 188-269 340-418 (563)
184 3i32_A Heat resistant RNA depe 84.2 5.5 0.00019 38.4 10.3 69 189-267 30-102 (300)
185 2dr3_A UPF0273 protein PH0284; 83.7 1.2 4.1E-05 41.2 5.3 51 145-209 22-72 (247)
186 2i4i_A ATP-dependent RNA helic 83.6 4.6 0.00016 40.5 10.1 71 187-267 276-350 (417)
187 3oiy_A Reverse gyrase helicase 83.6 1.9 6.5E-05 43.6 7.2 83 353-435 54-147 (414)
188 3cmu_A Protein RECA, recombina 83.5 1.3 4.4E-05 53.7 6.5 59 425-486 1772-1832(2050)
189 3bgw_A DNAB-like replicative h 83.4 1.5 5E-05 45.1 6.1 29 145-173 196-224 (444)
190 3e70_C DPA, signal recognition 83.0 3.3 0.00011 40.5 8.3 53 262-316 212-265 (328)
191 1e9r_A Conjugal transfer prote 82.9 0.72 2.5E-05 47.3 3.6 44 145-201 52-95 (437)
192 2qgz_A Helicase loader, putati 82.9 2.7 9.1E-05 40.8 7.5 19 146-164 152-170 (308)
193 3pxi_A Negative regulator of g 82.5 1.5 5.1E-05 48.5 6.2 16 148-163 523-538 (758)
194 3sqw_A ATP-dependent RNA helic 82.1 14 0.00049 39.1 13.6 76 188-270 289-368 (579)
195 4ddu_A Reverse gyrase; topoiso 81.8 1.9 6.5E-05 49.8 6.8 82 354-435 112-204 (1104)
196 1ls1_A Signal recognition part 80.9 13 0.00045 35.5 11.6 19 145-163 97-115 (295)
197 3fht_A ATP-dependent RNA helic 80.9 5.7 0.0002 39.7 9.6 70 188-267 267-340 (412)
198 1c4o_A DNA nucleotide excision 80.4 42 0.0014 36.2 16.6 75 189-273 441-519 (664)
199 1yks_A Genome polyprotein [con 80.0 2.9 0.0001 42.8 7.0 68 188-266 178-245 (440)
200 1hv8_A Putative ATP-dependent 79.7 6.3 0.00022 38.5 9.3 72 188-269 239-314 (367)
201 3pey_A ATP-dependent RNA helic 79.0 7.5 0.00026 38.5 9.6 74 188-271 244-321 (395)
202 2v1x_A ATP-dependent DNA helic 78.8 6.7 0.00023 41.8 9.5 70 188-267 268-341 (591)
203 3hr8_A Protein RECA; alpha and 78.6 1.7 5.9E-05 43.1 4.5 21 145-165 60-80 (356)
204 3cmu_A Protein RECA, recombina 78.5 4.1 0.00014 49.5 8.3 48 143-204 1078-1125(2050)
205 2oap_1 GSPE-2, type II secreti 78.4 1.8 6E-05 45.4 4.8 40 121-162 236-276 (511)
206 2db3_A ATP-dependent RNA helic 78.3 7.8 0.00027 39.4 9.6 68 190-267 303-374 (434)
207 1xti_A Probable ATP-dependent 78.2 8.3 0.00028 38.2 9.7 73 188-270 251-327 (391)
208 2zts_A Putative uncharacterize 78.0 1.9 6.6E-05 39.9 4.5 52 145-209 29-80 (251)
209 1oyw_A RECQ helicase, ATP-depe 77.9 7.4 0.00025 40.8 9.5 69 189-267 238-310 (523)
210 1s2m_A Putative ATP-dependent 77.5 8.7 0.0003 38.2 9.6 71 188-268 259-333 (400)
211 3nwn_A Kinesin-like protein KI 77.4 1.5 5E-05 43.6 3.6 25 139-163 96-122 (359)
212 3io5_A Recombination and repai 77.1 2.4 8.4E-05 41.1 4.9 42 148-200 30-71 (333)
213 2yhs_A FTSY, cell division pro 76.7 8.4 0.00029 39.8 9.1 17 147-163 294-310 (503)
214 2j0s_A ATP-dependent RNA helic 76.7 8.8 0.0003 38.4 9.4 69 189-267 278-350 (410)
215 2px0_A Flagellar biosynthesis 76.4 1.8 6.2E-05 41.7 3.9 21 145-165 104-124 (296)
216 3b85_A Phosphate starvation-in 76.2 2.8 9.7E-05 38.0 4.9 35 129-163 5-39 (208)
217 1bg2_A Kinesin; motor protein, 75.8 1.9 6.5E-05 42.2 3.8 25 139-163 69-95 (325)
218 1qvr_A CLPB protein; coiled co 75.8 5.4 0.00019 44.7 8.1 18 146-163 191-208 (854)
219 1u0j_A DNA replication protein 75.4 5.4 0.00019 37.6 6.7 43 119-164 74-122 (267)
220 1ofh_A ATP-dependent HSL prote 75.3 4.6 0.00016 38.6 6.6 19 145-163 49-67 (310)
221 4ag6_A VIRB4 ATPase, type IV s 75.2 3.5 0.00012 41.4 5.8 44 144-200 33-76 (392)
222 3dc4_A Kinesin-like protein NO 74.9 1.8 6.3E-05 42.6 3.5 24 140-163 87-112 (344)
223 3hws_A ATP-dependent CLP prote 74.8 3.5 0.00012 40.9 5.7 19 145-163 50-68 (363)
224 1v8k_A Kinesin-like protein KI 74.8 2 6.8E-05 43.3 3.8 25 139-163 146-172 (410)
225 2wv9_A Flavivirin protease NS2 74.8 5.9 0.0002 42.9 7.8 69 187-266 410-478 (673)
226 3nbx_X ATPase RAVA; AAA+ ATPas 74.6 3.6 0.00012 42.9 5.8 34 129-162 24-57 (500)
227 4b4t_M 26S protease regulatory 74.5 1.3 4.3E-05 45.3 2.3 54 106-162 175-231 (434)
228 2vvg_A Kinesin-2; motor protei 74.2 2.2 7.4E-05 42.2 3.8 24 140-163 82-107 (350)
229 2h58_A Kinesin-like protein KI 74.2 2.2 7.5E-05 41.8 3.8 25 139-163 72-98 (330)
230 2y65_A Kinesin, kinesin heavy 74.1 2.2 7.4E-05 42.5 3.8 24 140-163 77-102 (365)
231 2v6i_A RNA helicase; membrane, 74.1 4.5 0.00015 41.2 6.4 67 188-265 172-238 (431)
232 3t0q_A AGR253WP; kinesin, alph 74.0 2.1 7.3E-05 42.3 3.7 25 139-163 77-103 (349)
233 4etp_A Kinesin-like protein KA 74.0 2 7E-05 43.3 3.7 25 139-163 132-158 (403)
234 1goj_A Kinesin, kinesin heavy 74.0 2.1 7.2E-05 42.4 3.7 24 140-163 73-98 (355)
235 2j37_W Signal recognition part 73.8 17 0.00059 37.7 10.7 18 148-165 103-120 (504)
236 3b6u_A Kinesin-like protein KI 73.8 2.2 7.4E-05 42.5 3.7 25 139-163 93-119 (372)
237 1t5c_A CENP-E protein, centrom 73.7 2.2 7.5E-05 42.1 3.7 25 139-163 69-95 (349)
238 2zfi_A Kinesin-like protein KI 73.6 2.3 7.7E-05 42.4 3.8 25 139-163 81-107 (366)
239 2nr8_A Kinesin-like protein KI 73.6 2.2 7.6E-05 42.3 3.7 25 139-163 95-121 (358)
240 4a14_A Kinesin, kinesin-like p 73.6 2.2 7.5E-05 42.1 3.7 25 139-163 75-101 (344)
241 2bjv_A PSP operon transcriptio 73.6 2.3 8E-05 40.0 3.8 19 144-162 27-45 (265)
242 2eyu_A Twitching motility prot 73.6 1.6 5.4E-05 41.3 2.6 21 143-163 22-42 (261)
243 3lre_A Kinesin-like protein KI 73.5 2.3 7.8E-05 42.2 3.8 25 139-163 97-123 (355)
244 1kgd_A CASK, peripheral plasma 73.4 1.6 5.4E-05 38.5 2.4 19 145-163 4-22 (180)
245 1x88_A Kinesin-like protein KI 73.3 2.2 7.4E-05 42.4 3.6 25 139-163 80-106 (359)
246 3mm4_A Histidine kinase homolo 73.3 23 0.00078 31.5 10.4 67 144-210 18-84 (206)
247 3gbj_A KIF13B protein; kinesin 73.3 2.3 7.8E-05 42.1 3.7 25 139-163 84-110 (354)
248 3cob_A Kinesin heavy chain-lik 72.9 2 6.9E-05 42.7 3.3 25 139-163 71-97 (369)
249 2r44_A Uncharacterized protein 72.9 1.9 6.3E-05 42.2 3.0 24 139-162 39-62 (331)
250 1f9v_A Kinesin-like protein KA 72.9 1.9 6.6E-05 42.5 3.1 25 139-163 76-102 (347)
251 1wp9_A ATP-dependent RNA helic 72.7 17 0.00059 36.8 10.6 73 189-271 363-447 (494)
252 2gza_A Type IV secretion syste 72.7 2.2 7.5E-05 42.5 3.5 20 143-162 172-191 (361)
253 3u06_A Protein claret segregat 72.6 2.2 7.5E-05 43.1 3.5 25 139-163 130-156 (412)
254 2yjt_D ATP-dependent RNA helic 75.0 0.74 2.5E-05 40.3 0.0 70 189-268 32-105 (170)
255 2heh_A KIF2C protein; kinesin, 72.6 2.4 8.2E-05 42.4 3.7 25 139-163 126-152 (387)
256 3bfn_A Kinesin-like protein KI 72.3 2.2 7.4E-05 42.7 3.3 23 141-163 92-116 (388)
257 2wbe_C Bipolar kinesin KRP-130 72.2 2.3 7.9E-05 42.4 3.5 24 140-163 93-118 (373)
258 1pzn_A RAD51, DNA repair and r 72.2 10 0.00034 37.4 8.2 22 145-166 130-151 (349)
259 1vma_A Cell division protein F 72.0 6.7 0.00023 37.9 6.7 19 146-164 104-122 (306)
260 2ffh_A Protein (FFH); SRP54, s 71.8 38 0.0013 34.2 12.4 21 145-165 97-117 (425)
261 2jlq_A Serine protease subunit 71.7 8.4 0.00029 39.5 7.8 67 189-266 190-256 (451)
262 3cf0_A Transitional endoplasmi 71.1 1.5 5E-05 42.5 1.7 55 108-163 11-66 (301)
263 3bh0_A DNAB-like replicative h 70.7 6.3 0.00022 38.2 6.3 51 144-208 66-116 (315)
264 2owm_A Nckin3-434, related to 70.7 2.8 9.7E-05 42.8 3.8 25 139-163 128-154 (443)
265 2rep_A Kinesin-like protein KI 70.4 2.5 8.7E-05 42.1 3.3 25 139-163 107-133 (376)
266 1p9r_A General secretion pathw 70.3 3.6 0.00012 41.8 4.5 28 135-162 154-183 (418)
267 2xau_A PRE-mRNA-splicing facto 70.3 14 0.00049 40.7 9.7 75 187-267 303-393 (773)
268 3vaa_A Shikimate kinase, SK; s 70.2 2.1 7.1E-05 38.4 2.5 19 145-163 24-42 (199)
269 2pt7_A CAG-ALFA; ATPase, prote 68.9 2.5 8.5E-05 41.5 2.9 20 143-162 168-187 (330)
270 1j8m_F SRP54, signal recogniti 68.8 42 0.0015 32.0 11.6 20 146-165 98-117 (297)
271 3u4q_B ATP-dependent helicase/ 68.5 6.5 0.00022 45.8 6.7 47 150-207 5-51 (1166)
272 3tau_A Guanylate kinase, GMP k 68.5 3 0.0001 37.7 3.2 19 145-163 7-25 (208)
273 1lvg_A Guanylate kinase, GMP k 68.4 2.9 0.0001 37.4 3.1 19 145-163 3-21 (198)
274 3trf_A Shikimate kinase, SK; a 67.9 2.5 8.5E-05 37.2 2.4 18 146-163 5-22 (185)
275 3iij_A Coilin-interacting nucl 67.8 2 6.7E-05 37.7 1.7 21 144-164 9-29 (180)
276 3a8t_A Adenylate isopentenyltr 67.7 2.6 8.9E-05 41.3 2.7 17 146-162 40-56 (339)
277 2qor_A Guanylate kinase; phosp 67.5 2.4 8.1E-05 38.2 2.3 21 143-163 9-29 (204)
278 2oca_A DAR protein, ATP-depend 67.5 20 0.00069 37.0 9.8 74 189-271 349-426 (510)
279 1tue_A Replication protein E1; 67.5 6.3 0.00022 35.6 4.9 50 119-171 29-82 (212)
280 1ojl_A Transcriptional regulat 67.2 3.7 0.00013 39.7 3.7 20 144-163 23-42 (304)
281 2qmh_A HPR kinase/phosphorylas 67.0 2.9 9.9E-05 37.6 2.6 18 145-162 33-50 (205)
282 2j41_A Guanylate kinase; GMP, 67.0 2.6 8.8E-05 37.7 2.4 20 144-163 4-23 (207)
283 3fe2_A Probable ATP-dependent 67.0 9.8 0.00034 35.0 6.5 68 362-433 101-182 (242)
284 1zp6_A Hypothetical protein AT 66.7 2 6.7E-05 38.0 1.5 20 143-162 6-25 (191)
285 3exa_A TRNA delta(2)-isopenten 66.5 2.6 8.8E-05 40.9 2.3 17 147-163 4-20 (322)
286 3b9p_A CG5977-PA, isoform A; A 66.5 2.5 8.5E-05 40.5 2.3 19 145-163 53-71 (297)
287 2qz4_A Paraplegin; AAA+, SPG7, 66.4 2.6 9E-05 39.3 2.4 19 145-163 38-56 (262)
288 3foz_A TRNA delta(2)-isopenten 66.4 2.6 8.9E-05 40.8 2.3 16 148-163 12-27 (316)
289 3lw7_A Adenylate kinase relate 66.1 2.6 8.8E-05 36.4 2.1 16 148-163 3-18 (179)
290 2ewv_A Twitching motility prot 66.1 2.6 9E-05 42.1 2.4 21 143-163 133-153 (372)
291 1qhx_A CPT, protein (chloramph 66.0 2.8 9.7E-05 36.4 2.4 18 146-163 3-20 (178)
292 3cmw_A Protein RECA, recombina 65.9 8.5 0.00029 46.1 7.0 91 146-275 1431-1523(1706)
293 3ber_A Probable ATP-dependent 65.7 14 0.00047 34.2 7.3 68 362-433 110-192 (249)
294 1ry6_A Internal kinesin; kines 65.6 3.9 0.00013 40.5 3.6 19 145-163 82-102 (360)
295 3jvv_A Twitching mobility prot 65.5 3.1 0.00011 41.2 2.8 18 145-162 122-139 (356)
296 3tr0_A Guanylate kinase, GMP k 65.2 3 0.0001 37.2 2.5 19 145-163 6-24 (205)
297 1w36_B RECB, exodeoxyribonucle 65.0 11 0.00038 43.9 7.7 61 148-209 18-78 (1180)
298 3tbk_A RIG-I helicase domain; 65.0 18 0.00062 37.6 9.0 73 189-267 391-476 (555)
299 4b4t_H 26S protease regulatory 64.9 2.8 9.7E-05 42.9 2.4 52 109-163 206-260 (467)
300 2ze6_A Isopentenyl transferase 64.8 2.7 9.4E-05 39.4 2.2 16 148-163 3-18 (253)
301 1u94_A RECA protein, recombina 64.5 6.6 0.00023 38.9 5.0 28 145-172 62-89 (356)
302 2zr9_A Protein RECA, recombina 64.5 6.4 0.00022 38.8 4.9 28 145-172 60-87 (349)
303 1ixz_A ATP-dependent metallopr 64.4 2.2 7.5E-05 39.9 1.4 53 107-162 11-65 (254)
304 3a00_A Guanylate kinase, GMP k 64.3 3.3 0.00011 36.6 2.5 17 147-163 2-18 (186)
305 1z6g_A Guanylate kinase; struc 64.3 3.4 0.00012 37.7 2.7 19 144-162 21-39 (218)
306 3ney_A 55 kDa erythrocyte memb 64.1 4.2 0.00014 36.5 3.1 19 145-163 18-36 (197)
307 1lv7_A FTSH; alpha/beta domain 64.0 3 0.0001 39.0 2.2 53 108-163 8-62 (257)
308 2whx_A Serine protease/ntpase/ 63.9 17 0.0006 38.8 8.5 68 188-266 356-423 (618)
309 1y63_A LMAJ004144AAA protein; 63.7 3.4 0.00012 36.4 2.5 19 145-163 9-27 (184)
310 1kag_A SKI, shikimate kinase I 63.4 3.6 0.00012 35.6 2.5 17 146-162 4-20 (173)
311 2ius_A DNA translocase FTSK; n 63.3 9.1 0.00031 39.8 5.9 27 145-171 166-192 (512)
312 4b4t_J 26S protease regulatory 62.5 3.3 0.00011 41.6 2.4 53 107-162 143-198 (405)
313 4gp7_A Metallophosphoesterase; 62.4 3.1 0.00011 36.2 1.9 20 145-164 8-27 (171)
314 1xwi_A SKD1 protein; VPS4B, AA 61.7 3.4 0.00012 40.3 2.3 50 108-163 8-62 (322)
315 1t6n_A Probable ATP-dependent 61.6 15 0.00052 32.9 6.6 68 363-433 82-164 (220)
316 3bor_A Human initiation factor 61.5 14 0.00048 33.8 6.4 69 362-433 97-179 (237)
317 1ly1_A Polynucleotide kinase; 61.5 3.6 0.00012 35.8 2.2 16 148-163 4-19 (181)
318 2gxq_A Heat resistant RNA depe 61.4 13 0.00045 32.8 6.1 68 362-433 71-150 (207)
319 1kht_A Adenylate kinase; phosp 61.3 3.9 0.00013 35.9 2.4 18 146-163 3-20 (192)
320 1znw_A Guanylate kinase, GMP k 61.2 4 0.00014 36.7 2.5 22 142-163 16-37 (207)
321 1xp8_A RECA protein, recombina 61.1 8.1 0.00028 38.4 4.9 27 145-171 73-99 (366)
322 3t15_A Ribulose bisphosphate c 60.9 3.4 0.00012 39.7 2.1 17 147-163 37-53 (293)
323 4eun_A Thermoresistant glucoki 60.9 4.1 0.00014 36.4 2.5 19 145-163 28-46 (200)
324 1s96_A Guanylate kinase, GMP k 60.7 4.1 0.00014 37.2 2.5 21 143-163 13-33 (219)
325 1ex7_A Guanylate kinase; subst 60.7 4.3 0.00015 36.0 2.6 16 147-162 2-17 (186)
326 2pl3_A Probable ATP-dependent 60.2 17 0.00058 33.0 6.8 67 362-433 96-177 (236)
327 2z0m_A 337AA long hypothetical 60.1 17 0.00057 34.9 7.1 68 188-269 221-292 (337)
328 3kb2_A SPBC2 prophage-derived 60.0 3.9 0.00013 35.2 2.1 16 148-163 3-18 (173)
329 3rc3_A ATP-dependent RNA helic 59.8 25 0.00086 38.0 8.9 73 190-273 323-401 (677)
330 3vkg_A Dynein heavy chain, cyt 59.6 7.6 0.00026 49.4 5.2 48 116-164 873-924 (3245)
331 1um8_A ATP-dependent CLP prote 59.6 4.2 0.00014 40.5 2.6 19 145-163 71-89 (376)
332 4b4t_L 26S protease subunit RP 59.6 3.9 0.00013 41.7 2.3 53 108-163 177-232 (437)
333 2iut_A DNA translocase FTSK; n 59.6 12 0.0004 39.5 5.9 27 146-172 214-240 (574)
334 1iy2_A ATP-dependent metallopr 59.5 3.1 0.00011 39.5 1.5 53 107-162 35-89 (278)
335 4b4t_K 26S protease regulatory 59.5 4 0.00014 41.5 2.3 53 108-163 168-223 (428)
336 1gku_B Reverse gyrase, TOP-RG; 59.3 12 0.00041 42.9 6.6 71 361-433 97-181 (1054)
337 4fcw_A Chaperone protein CLPB; 59.1 4.8 0.00016 38.7 2.8 17 147-163 48-64 (311)
338 3crm_A TRNA delta(2)-isopenten 59.0 4.9 0.00017 39.1 2.8 16 148-163 7-22 (323)
339 1knq_A Gluconate kinase; ALFA/ 59.0 3.8 0.00013 35.5 1.9 18 146-163 8-25 (175)
340 2ykg_A Probable ATP-dependent 58.7 8.6 0.00029 41.8 5.1 75 188-268 399-486 (696)
341 2c9o_A RUVB-like 1; hexameric 58.6 4.2 0.00014 41.9 2.4 18 146-163 63-80 (456)
342 1m7g_A Adenylylsulfate kinase; 58.2 6.5 0.00022 35.4 3.4 30 133-163 13-42 (211)
343 4dzz_A Plasmid partitioning pr 58.0 28 0.00094 30.6 7.7 31 238-271 55-85 (206)
344 3cm0_A Adenylate kinase; ATP-b 57.9 3.5 0.00012 36.2 1.5 19 145-163 3-21 (186)
345 2r8r_A Sensor protein; KDPD, P 57.8 12 0.00041 34.3 5.0 26 148-173 8-33 (228)
346 1tf7_A KAIC; homohexamer, hexa 57.5 42 0.0014 34.9 10.0 44 259-304 369-417 (525)
347 3d3q_A TRNA delta(2)-isopenten 57.4 5.5 0.00019 39.1 2.9 16 148-163 9-24 (340)
348 2r2a_A Uncharacterized protein 56.9 6.7 0.00023 35.2 3.2 22 148-169 7-28 (199)
349 2cvh_A DNA repair and recombin 56.9 5.6 0.00019 35.8 2.7 22 145-166 19-40 (220)
350 1hqc_A RUVB; extended AAA-ATPa 56.2 4.1 0.00014 39.4 1.8 18 146-163 38-55 (324)
351 3nwj_A ATSK2; P loop, shikimat 56.2 7.4 0.00025 36.3 3.5 20 144-163 46-65 (250)
352 2r62_A Cell division protease 56.1 2.9 9.8E-05 39.4 0.6 18 146-163 44-61 (268)
353 4h1g_A Maltose binding protein 55.6 6.4 0.00022 43.1 3.4 25 139-163 454-480 (715)
354 1vec_A ATP-dependent RNA helic 55.6 19 0.00064 31.8 6.1 68 362-433 70-152 (206)
355 3eph_A TRNA isopentenyltransfe 55.4 5 0.00017 40.3 2.2 16 148-163 4-19 (409)
356 3t61_A Gluconokinase; PSI-biol 55.1 5.2 0.00018 35.7 2.2 17 147-163 19-35 (202)
357 3iuy_A Probable ATP-dependent 55.1 20 0.00067 32.4 6.2 68 362-433 93-173 (228)
358 2bdt_A BH3686; alpha-beta prot 55.0 5.3 0.00018 35.1 2.2 17 147-163 3-19 (189)
359 4gl2_A Interferon-induced heli 55.0 8 0.00027 42.0 4.0 75 187-267 400-488 (699)
360 2c95_A Adenylate kinase 1; tra 54.9 6 0.00021 34.8 2.5 20 144-163 7-26 (196)
361 3eiq_A Eukaryotic initiation f 54.8 8.8 0.0003 38.3 4.1 70 188-267 281-354 (414)
362 4b4t_I 26S protease regulatory 54.8 5.3 0.00018 40.5 2.3 53 107-162 177-232 (437)
363 4akg_A Glutathione S-transfera 54.3 13 0.00046 46.7 6.1 49 116-165 890-942 (2695)
364 3uie_A Adenylyl-sulfate kinase 54.0 5.3 0.00018 35.6 2.0 20 144-163 23-42 (200)
365 1g8p_A Magnesium-chelatase 38 53.9 3.8 0.00013 40.2 1.1 19 145-163 44-62 (350)
366 2rhm_A Putative kinase; P-loop 53.6 5.6 0.00019 35.0 2.1 18 146-163 5-22 (193)
367 2oxc_A Probable ATP-dependent 53.5 15 0.00051 33.4 5.1 67 362-433 91-172 (230)
368 1f2t_A RAD50 ABC-ATPase; DNA d 53.4 6.1 0.00021 33.5 2.2 15 148-162 25-39 (149)
369 2v54_A DTMP kinase, thymidylat 53.3 5.8 0.0002 35.3 2.2 19 145-163 3-21 (204)
370 1zuh_A Shikimate kinase; alpha 52.9 6.3 0.00022 33.8 2.3 18 147-164 8-25 (168)
371 1gvn_B Zeta; postsegregational 52.9 5.5 0.00019 38.1 2.0 17 147-163 34-50 (287)
372 3c8u_A Fructokinase; YP_612366 52.8 5.4 0.00018 35.9 1.9 18 145-162 21-38 (208)
373 1tev_A UMP-CMP kinase; ploop, 52.6 6.1 0.00021 34.7 2.2 18 146-163 3-20 (196)
374 2bwj_A Adenylate kinase 5; pho 52.5 6.9 0.00024 34.5 2.5 19 145-163 11-29 (199)
375 2x8a_A Nuclear valosin-contain 52.4 5.9 0.0002 37.5 2.2 51 109-162 7-60 (274)
376 3lnc_A Guanylate kinase, GMP k 52.1 6.1 0.00021 36.2 2.1 20 144-163 25-44 (231)
377 3tif_A Uncharacterized ABC tra 52.0 6 0.00021 36.5 2.1 17 145-161 30-46 (235)
378 1in4_A RUVB, holliday junction 52.0 8 0.00027 37.8 3.1 17 147-163 52-68 (334)
379 2zan_A Vacuolar protein sortin 51.8 6.3 0.00022 40.3 2.4 54 107-163 129-184 (444)
380 3pxg_A Negative regulator of g 51.6 8.9 0.0003 39.5 3.5 27 145-172 200-226 (468)
381 2va8_A SSO2462, SKI2-type heli 51.6 43 0.0015 36.4 9.2 74 189-268 254-363 (715)
382 1zd8_A GTP:AMP phosphotransfer 51.5 6.7 0.00023 35.7 2.3 18 146-163 7-24 (227)
383 3qf7_A RAD50; ABC-ATPase, ATPa 51.5 6.2 0.00021 39.2 2.2 16 148-163 25-40 (365)
384 3fb4_A Adenylate kinase; psych 51.4 6.5 0.00022 35.4 2.2 17 148-164 2-18 (216)
385 4a74_A DNA repair and recombin 51.3 6.2 0.00021 35.8 2.1 20 145-164 24-43 (231)
386 1q57_A DNA primase/helicase; d 51.3 11 0.00038 39.1 4.2 28 144-171 240-267 (503)
387 3asz_A Uridine kinase; cytidin 50.8 6.2 0.00021 35.4 1.9 19 145-163 5-23 (211)
388 1via_A Shikimate kinase; struc 50.6 7.4 0.00025 33.7 2.4 16 148-163 6-21 (175)
389 1wrb_A DJVLGB; RNA helicase, D 50.6 22 0.00074 32.7 5.8 67 363-433 100-180 (253)
390 2pez_A Bifunctional 3'-phospho 50.5 6.6 0.00023 34.2 2.0 19 145-163 4-22 (179)
391 1nks_A Adenylate kinase; therm 50.4 6.7 0.00023 34.3 2.1 16 148-163 3-18 (194)
392 2i3b_A HCR-ntpase, human cance 50.2 10 0.00035 33.7 3.2 42 259-305 103-146 (189)
393 3f9v_A Minichromosome maintena 50.2 7.5 0.00026 41.5 2.7 15 148-162 329-343 (595)
394 3dl0_A Adenylate kinase; phosp 49.9 7.1 0.00024 35.2 2.2 17 148-164 2-18 (216)
395 1aky_A Adenylate kinase; ATP:A 49.8 7.9 0.00027 35.0 2.5 18 146-163 4-21 (220)
396 1qf9_A UMP/CMP kinase, protein 49.7 7 0.00024 34.2 2.1 16 148-163 8-23 (194)
397 2z83_A Helicase/nucleoside tri 49.7 15 0.00052 37.6 4.9 68 188-266 191-258 (459)
398 3kta_A Chromosome segregation 49.7 9.5 0.00032 33.2 2.9 15 148-162 28-42 (182)
399 2iyv_A Shikimate kinase, SK; t 49.6 8.3 0.00029 33.6 2.6 17 147-163 3-19 (184)
400 3ly5_A ATP-dependent RNA helic 49.6 27 0.00094 32.4 6.4 68 362-433 125-207 (262)
401 1nij_A Hypothetical protein YJ 49.6 13 0.00044 36.1 4.1 15 148-162 6-20 (318)
402 1rj9_A FTSY, signal recognitio 49.6 19 0.00066 34.6 5.3 18 146-163 102-119 (304)
403 1e6c_A Shikimate kinase; phosp 49.5 7.4 0.00025 33.4 2.2 17 147-163 3-19 (173)
404 1ye8_A Protein THEP1, hypothet 49.4 9.8 0.00033 33.3 2.9 15 148-162 2-16 (178)
405 1v5w_A DMC1, meiotic recombina 49.3 11 0.00036 37.1 3.5 23 146-168 122-144 (343)
406 3b9q_A Chloroplast SRP recepto 48.9 17 0.00059 34.9 4.9 19 145-163 99-117 (302)
407 2v9p_A Replication protein E1; 48.9 9.2 0.00031 36.9 2.9 19 144-162 124-142 (305)
408 3o8b_A HCV NS3 protease/helica 48.8 22 0.00075 38.3 6.0 67 186-266 395-461 (666)
409 2cbz_A Multidrug resistance-as 48.6 7.3 0.00025 36.0 2.1 18 145-162 30-47 (237)
410 2qt1_A Nicotinamide riboside k 48.6 5.1 0.00017 35.9 0.9 21 143-163 18-38 (207)
411 1cke_A CK, MSSA, protein (cyti 48.5 7.6 0.00026 35.2 2.2 17 147-163 6-22 (227)
412 2yvu_A Probable adenylyl-sulfa 48.4 7.4 0.00025 34.1 2.0 19 145-163 12-30 (186)
413 3k1j_A LON protease, ATP-depen 48.3 11 0.00039 40.1 3.8 23 141-163 55-77 (604)
414 1zak_A Adenylate kinase; ATP:A 48.3 8.6 0.00029 34.8 2.5 18 146-163 5-22 (222)
415 1zu4_A FTSY; GTPase, signal re 48.0 18 0.00062 35.0 4.9 19 145-163 104-122 (320)
416 3bs4_A Uncharacterized protein 48.0 18 0.00063 33.8 4.7 53 145-211 20-72 (260)
417 1ukz_A Uridylate kinase; trans 47.6 8.1 0.00028 34.3 2.2 16 148-163 17-32 (203)
418 1sgw_A Putative ABC transporte 47.5 8.1 0.00028 35.1 2.1 32 259-290 149-180 (214)
419 1g41_A Heat shock protein HSLU 47.5 32 0.0011 35.0 6.8 18 146-163 50-67 (444)
420 2cdn_A Adenylate kinase; phosp 47.3 7.3 0.00025 34.6 1.8 18 146-163 20-37 (201)
421 2if2_A Dephospho-COA kinase; a 47.2 8 0.00028 34.4 2.1 16 148-163 3-18 (204)
422 1ak2_A Adenylate kinase isoenz 47.1 8.9 0.00031 35.1 2.4 19 145-163 15-33 (233)
423 3auy_A DNA double-strand break 46.8 7.8 0.00027 38.5 2.1 15 148-162 27-41 (371)
424 2pt5_A Shikimate kinase, SK; a 46.8 8.6 0.0003 32.8 2.1 16 148-163 2-17 (168)
425 1qde_A EIF4A, translation init 46.8 21 0.00072 32.0 5.0 67 362-433 81-161 (224)
426 1jjv_A Dephospho-COA kinase; P 46.7 8.5 0.00029 34.3 2.2 16 148-163 4-19 (206)
427 2i1q_A DNA repair and recombin 46.6 11 0.00037 36.5 3.1 25 145-169 97-121 (322)
428 2f1r_A Molybdopterin-guanine d 46.4 7.2 0.00025 34.0 1.6 16 148-163 4-19 (171)
429 2plr_A DTMP kinase, probable t 46.4 8.2 0.00028 34.4 2.0 19 145-163 3-21 (213)
430 3p32_A Probable GTPase RV1496/ 46.2 2.1E+02 0.0071 27.7 12.5 17 148-164 81-97 (355)
431 2wwf_A Thymidilate kinase, put 46.1 9.4 0.00032 34.1 2.4 19 145-163 9-27 (212)
432 2jaq_A Deoxyguanosine kinase; 46.1 8.8 0.0003 33.9 2.1 16 148-163 2-17 (205)
433 3euj_A Chromosome partition pr 46.1 13 0.00044 38.3 3.6 36 260-300 413-448 (483)
434 3a4m_A L-seryl-tRNA(SEC) kinas 45.9 8.7 0.0003 35.9 2.2 17 147-163 5-21 (260)
435 3sr0_A Adenylate kinase; phosp 45.9 11 0.00039 33.8 2.9 16 149-164 3-18 (206)
436 2vli_A Antibiotic resistance p 45.9 7.8 0.00027 33.7 1.7 18 146-163 5-22 (183)
437 2pze_A Cystic fibrosis transme 45.7 8.5 0.00029 35.3 2.0 18 145-162 33-50 (229)
438 2ce7_A Cell division protein F 45.7 8.6 0.00029 39.7 2.2 17 147-163 50-66 (476)
439 3gfo_A Cobalt import ATP-bindi 45.7 8.2 0.00028 36.6 2.0 18 145-162 33-50 (275)
440 2bbw_A Adenylate kinase 4, AK4 45.6 8.9 0.0003 35.4 2.2 18 146-163 27-44 (246)
441 2ghi_A Transport protein; mult 45.5 8.7 0.0003 36.1 2.1 18 145-162 45-62 (260)
442 2ff7_A Alpha-hemolysin translo 45.5 8.6 0.00029 35.8 2.0 18 145-162 34-51 (247)
443 1htw_A HI0065; nucleotide-bind 45.3 8.1 0.00028 33.1 1.7 19 144-162 31-49 (158)
444 1nn5_A Similar to deoxythymidy 45.2 10 0.00034 33.9 2.4 19 145-163 8-26 (215)
445 4anj_A Unconventional myosin-V 45.0 24 0.00081 40.1 5.8 55 109-163 98-161 (1052)
446 3m6a_A ATP-dependent protease 44.9 9.4 0.00032 40.2 2.4 19 145-163 107-125 (543)
447 2pbr_A DTMP kinase, thymidylat 44.8 9.5 0.00032 33.4 2.2 15 149-163 3-17 (195)
448 1e4v_A Adenylate kinase; trans 44.6 9.3 0.00032 34.4 2.1 16 148-163 2-17 (214)
449 2z0h_A DTMP kinase, thymidylat 44.3 9.9 0.00034 33.4 2.2 16 149-164 3-18 (197)
450 3umf_A Adenylate kinase; rossm 44.3 11 0.00039 34.2 2.6 20 145-164 28-47 (217)
451 2pcj_A ABC transporter, lipopr 44.2 8.9 0.0003 35.0 1.9 18 145-162 29-46 (224)
452 4ehx_A Tetraacyldisaccharide 4 44.1 29 0.001 33.5 5.7 110 149-268 38-156 (315)
453 4akg_A Glutathione S-transfera 44.0 9.4 0.00032 48.0 2.5 21 143-163 1264-1284(2695)
454 2og2_A Putative signal recogni 43.9 22 0.00076 35.1 4.8 19 145-163 156-174 (359)
455 1ji0_A ABC transporter; ATP bi 43.9 9.4 0.00032 35.3 2.0 18 145-162 31-48 (240)
456 3nh6_A ATP-binding cassette SU 43.9 8.9 0.0003 37.0 1.9 18 145-162 79-96 (306)
457 4g1u_C Hemin import ATP-bindin 43.8 9.2 0.00032 36.0 2.0 18 145-162 36-53 (266)
458 3be4_A Adenylate kinase; malar 43.8 11 0.00037 34.1 2.4 18 146-163 5-22 (217)
459 4e22_A Cytidylate kinase; P-lo 43.6 11 0.00037 35.1 2.5 19 145-163 26-44 (252)
460 1g6h_A High-affinity branched- 43.5 9.5 0.00032 35.7 2.0 18 145-162 32-49 (257)
461 3tlx_A Adenylate kinase 2; str 43.3 12 0.0004 34.6 2.6 19 145-163 28-46 (243)
462 1b0u_A Histidine permease; ABC 43.2 9.9 0.00034 35.7 2.1 18 145-162 31-48 (262)
463 2zu0_C Probable ATP-dependent 43.2 9.9 0.00034 35.8 2.1 18 145-162 45-62 (267)
464 1mv5_A LMRA, multidrug resista 43.2 8.4 0.00029 35.7 1.6 18 145-162 27-44 (243)
465 2xb4_A Adenylate kinase; ATP-b 42.9 10 0.00036 34.4 2.1 16 148-163 2-17 (223)
466 3pxi_A Negative regulator of g 42.8 14 0.00047 40.7 3.5 26 145-171 200-225 (758)
467 2d2e_A SUFC protein; ABC-ATPas 42.8 9.9 0.00034 35.4 2.0 18 145-162 28-45 (250)
468 4a2p_A RIG-I, retinoic acid in 42.6 41 0.0014 34.9 7.0 74 189-268 392-478 (556)
469 3qks_A DNA double-strand break 42.3 11 0.00038 33.8 2.2 16 148-163 25-40 (203)
470 1uf9_A TT1252 protein; P-loop, 42.2 11 0.00036 33.4 2.1 16 148-163 10-25 (203)
471 1vpl_A ABC transporter, ATP-bi 42.2 10 0.00036 35.4 2.1 18 145-162 40-57 (256)
472 1rz3_A Hypothetical protein rb 42.1 11 0.00037 33.6 2.1 18 146-163 22-39 (201)
473 2qi9_C Vitamin B12 import ATP- 42.0 10 0.00036 35.3 2.0 18 145-162 25-42 (249)
474 2vhj_A Ntpase P4, P4; non- hyd 42.0 11 0.00039 36.5 2.3 24 144-167 121-144 (331)
475 2yz2_A Putative ABC transporte 42.0 11 0.00036 35.6 2.1 18 145-162 32-49 (266)
476 4a2q_A RIG-I, retinoic acid in 41.9 49 0.0017 36.4 7.9 74 189-268 633-719 (797)
477 3nzo_A UDP-N-acetylglucosamine 41.8 2.3E+02 0.0077 27.9 12.2 92 138-246 27-121 (399)
478 2ixe_A Antigen peptide transpo 41.7 11 0.00037 35.7 2.1 18 145-162 44-61 (271)
479 2p5t_B PEZT; postsegregational 41.7 8 0.00027 36.0 1.2 18 146-163 32-49 (253)
480 2nq2_C Hypothetical ABC transp 41.6 10 0.00036 35.3 1.9 18 145-162 30-47 (253)
481 4a2w_A RIG-I, retinoic acid in 41.4 61 0.0021 36.5 8.6 78 187-270 631-721 (936)
482 1vht_A Dephospho-COA kinase; s 40.8 12 0.0004 33.7 2.1 17 147-163 5-21 (218)
483 2olj_A Amino acid ABC transpor 40.8 11 0.00039 35.3 2.1 18 145-162 49-66 (263)
484 3fmp_B ATP-dependent RNA helic 40.7 5.8 0.0002 40.9 0.0 70 187-266 333-406 (479)
485 2ihy_A ABC transporter, ATP-bi 40.5 11 0.00038 35.7 2.0 18 145-162 46-63 (279)
486 3cmw_A Protein RECA, recombina 40.2 34 0.0012 41.0 6.4 30 145-174 33-62 (1706)
487 3h1t_A Type I site-specific re 39.5 91 0.0031 32.7 9.3 77 188-270 440-526 (590)
488 1odf_A YGR205W, hypothetical 3 38.8 13 0.00045 35.5 2.2 16 148-163 33-48 (290)
489 2xxa_A Signal recognition part 38.7 32 0.0011 34.8 5.2 21 147-167 101-121 (433)
490 2grj_A Dephospho-COA kinase; T 38.7 14 0.00047 32.8 2.2 17 148-164 14-30 (192)
491 1tf7_A KAIC; homohexamer, hexa 38.5 23 0.00078 37.0 4.2 28 144-171 37-64 (525)
492 2v26_A Myosin VI; calmodulin-b 38.1 45 0.0015 36.6 6.5 55 109-163 94-157 (784)
493 1xjc_A MOBB protein homolog; s 38.1 19 0.00063 31.3 2.9 15 148-162 6-20 (169)
494 1ltq_A Polynucleotide kinase; 37.8 14 0.00047 35.3 2.2 16 148-163 4-19 (301)
495 2jeo_A Uridine-cytidine kinase 37.8 13 0.00043 34.4 1.9 19 145-163 24-42 (245)
496 1z5z_A Helicase of the SNF2/RA 37.7 1.8E+02 0.0062 26.9 10.1 95 154-270 92-192 (271)
497 3dmq_A RNA polymerase-associat 37.7 88 0.003 35.4 9.1 74 189-271 505-584 (968)
498 2bbs_A Cystic fibrosis transme 37.6 13 0.00045 35.5 2.0 18 145-162 63-80 (290)
499 1g8x_A Myosin II heavy chain f 37.6 39 0.0013 38.3 6.1 55 109-163 127-189 (1010)
500 3lwd_A 6-phosphogluconolactona 37.6 57 0.0019 29.7 6.2 28 244-271 44-71 (226)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=4.4e-64 Score=529.64 Aligned_cols=361 Identities=34% Similarity=0.544 Sum_probs=322.1
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCC
Q 008207 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (574)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (574)
....|++++|++.++++|.++||..|||+|.++||.++.|+|++++|+||||||++|++|+++.+...... ....
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~-----~~~~ 128 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE-----LELG 128 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC-----CCTT
T ss_pred CcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc-----cccC
Confidence 34679999999999999999999999999999999999999999999999999999999999998764321 1234
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEE
Q 008207 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (574)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lV 266 (574)
++++|||+|||+||.|+++++.+++...++++.+++||.+...+...+..+++|+|+|||+|++++.++.+.+.++++||
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lV 208 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVV 208 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEE
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEE
Confidence 67899999999999999999999998889999999999999988888888999999999999999999888899999999
Q ss_pred ecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCc
Q 008207 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (574)
Q Consensus 267 lDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 346 (574)
+||||+|++++|..++..++..+...+.+|+++||||+|..+..++..++ .++..+.+... .....++.+.+..+..
T Consensus 209 lDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l-~~~~~i~~~~~--~~~~~~i~~~~~~~~~ 285 (434)
T 2db3_A 209 LDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFL-KNYVFVAIGIV--GGACSDVKQTIYEVNK 285 (434)
T ss_dssp EETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTC-SSCEEEEESST--TCCCTTEEEEEEECCG
T ss_pred EccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhc-cCCEEEEeccc--cccccccceEEEEeCc
Confidence 99999999999999999999987544578999999999999999999998 45666555432 2455678888888888
Q ss_pred hhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEecccccc
Q 008207 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (574)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~G 422 (574)
..+...+..++.... .++||||+++..++.++..|. .+..+||++++.+|..+++.|++|+.+|||||++++||
T Consensus 286 ~~k~~~l~~~l~~~~--~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rG 363 (434)
T 2db3_A 286 YAKRSKLIEILSEQA--DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRG 363 (434)
T ss_dssp GGHHHHHHHHHHHCC--TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSS
T ss_pred HHHHHHHHHHHHhCC--CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCC
Confidence 888888888887653 349999999999999999986 57789999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC--chHHHHHHHHh
Q 008207 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERES 477 (574)
Q Consensus 423 ldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~--~~~~~~i~~~~ 477 (574)
||+|+|++|||||+|.+..+|+||+|||||.|+.|.|++|+++. ......+.+.+
T Consensus 364 lDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l 420 (434)
T 2db3_A 364 LDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKIL 420 (434)
T ss_dssp CCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHH
T ss_pred CCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999965 44455555443
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.7e-59 Score=493.35 Aligned_cols=368 Identities=34% Similarity=0.522 Sum_probs=319.8
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCC--------
Q 008207 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA-------- 178 (574)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~-------- 178 (574)
...+|+++++++.++++|...||..|+|+|.++|+.++.|+|++++||||||||++|++|+++.+.......
T Consensus 13 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~ 92 (417)
T 2i4i_A 13 HIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKEN 92 (417)
T ss_dssp CCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccc
Confidence 345699999999999999999999999999999999999999999999999999999999999876432110
Q ss_pred cccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCcc
Q 008207 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNID 258 (574)
Q Consensus 179 ~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~ 258 (574)
.........+++||++|||+|+.|+++.+..++...++++..++||.....+...+..+++|+|+||++|.+++.++.+.
T Consensus 93 ~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~ 172 (417)
T 2i4i_A 93 GRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIG 172 (417)
T ss_dssp BTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBC
T ss_pred cccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcC
Confidence 00001123468999999999999999999999988899999999999998888888888999999999999999998888
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhc--cCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccc
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKV--EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN 336 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l--~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 336 (574)
+.++++||+||||++++++|...+..++... +.....|+++||||++..+..+...++ ..+..+..... .....+
T Consensus 173 ~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~ 249 (417)
T 2i4i_A 173 LDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFL-DEYIFLAVGRV--GSTSEN 249 (417)
T ss_dssp CTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHC-SSCEEEEEC------CCSS
T ss_pred hhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHc-CCCEEEEeCCC--CCCccC
Confidence 9999999999999999999999999998853 333367999999999999999998888 45555444322 245567
Q ss_pred eeEEEEeCCchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccE
Q 008207 337 VRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMT 412 (574)
Q Consensus 337 i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~v 412 (574)
+.+.+..+....+...+..++.....++++||||+++..++.++..|. .+..+||++++.+|..+++.|++|+.+|
T Consensus 250 i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 329 (417)
T 2i4i_A 250 ITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPI 329 (417)
T ss_dssp EEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCE
T ss_pred ceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCE
Confidence 888888888888889999999887778899999999999999999986 6788999999999999999999999999
Q ss_pred EEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHHh
Q 008207 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERES 477 (574)
Q Consensus 413 LvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~~ 477 (574)
||||+++++|+|+|++++||+||+|.+...|+||+||+||.|+.|.|++|+++. ...+..+.+.+
T Consensus 330 lvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~ 395 (417)
T 2i4i_A 330 LVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLL 395 (417)
T ss_dssp EEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHH
T ss_pred EEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988 66667776655
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=9.9e-60 Score=494.01 Aligned_cols=365 Identities=30% Similarity=0.467 Sum_probs=325.5
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCC
Q 008207 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (574)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (574)
....|+++++++.++++|...||..|+|+|.++++.++.|+|+++++|||||||++|++|+++.+... ..
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~----------~~ 104 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ----------VR 104 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT----------SC
T ss_pred CCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc----------cC
Confidence 34579999999999999999999999999999999999999999999999999999999999877532 23
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEE
Q 008207 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (574)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lV 266 (574)
++++||++||++|+.|+++.+..++...++.+..++||.....+...+..+++|+|+||++|.+++.++.+.+.++++||
T Consensus 105 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vV 184 (410)
T 2j0s_A 105 ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV 184 (410)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEE
Confidence 45799999999999999999999999999999999999999888888888899999999999999999888899999999
Q ss_pred ecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCc
Q 008207 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (574)
Q Consensus 267 lDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 346 (574)
+||||++++++|...+..++..++. ..|+++||||++..+..+...++ ..+..+... ........+.+.+..+..
T Consensus 185 iDEah~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 259 (410)
T 2j0s_A 185 LDEADEMLNKGFKEQIYDVYRYLPP--ATQVVLISATLPHEILEMTNKFM-TDPIRILVK--RDELTLEGIKQFFVAVER 259 (410)
T ss_dssp EETHHHHTSTTTHHHHHHHHTTSCT--TCEEEEEESCCCHHHHTTGGGTC-SSCEEECCC--GGGCSCTTEEEEEEEESS
T ss_pred EccHHHHHhhhhHHHHHHHHHhCcc--CceEEEEEcCCCHHHHHHHHHHc-CCCEEEEec--CccccCCCceEEEEEeCc
Confidence 9999999999999999999988876 68999999999998888777777 344444332 223445667777776655
Q ss_pred hh-hhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccc
Q 008207 347 SA-RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421 (574)
Q Consensus 347 ~~-~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~ 421 (574)
.. +...+..++... ..+++||||++++.++.++..|. .+..+||++++.+|..+++.|++|+.+|||||+++++
T Consensus 260 ~~~k~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 338 (410)
T 2j0s_A 260 EEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWAR 338 (410)
T ss_dssp TTHHHHHHHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSS
T ss_pred HHhHHHHHHHHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhC
Confidence 44 777888888766 45799999999999999999986 6789999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHHhCCcceecCCC
Q 008207 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487 (574)
Q Consensus 422 Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~~ 487 (574)
|+|+|++++||+||+|++...|+||+||+||.|+.|.|++|+++. ...+..+++.++..+++++.+
T Consensus 339 Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (410)
T 2j0s_A 339 GLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 405 (410)
T ss_dssp SCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSC
T ss_pred cCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccc
Confidence 999999999999999999999999999999999999999999988 788999999999999988754
No 4
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.1e-58 Score=506.51 Aligned_cols=375 Identities=28% Similarity=0.446 Sum_probs=310.8
Q ss_pred CCCcccccC----CCHHHHHHHHHCCCCCCcHHHHHHHHHHh--cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcc
Q 008207 107 HPNAVSRFR----ISVPLREKLKSKGIESLFPIQAMTFDMVL--DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASK 180 (574)
Q Consensus 107 ~~~~~~~~~----l~~~l~~~l~~~g~~~~~~~Q~~~i~~il--~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~ 180 (574)
.+..|+++. |+++++++|..+||..|+|+|.++|+.++ .|+|++++||||||||++|++|+++.+......
T Consensus 15 ~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~--- 91 (579)
T 3sqw_A 15 KEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD--- 91 (579)
T ss_dssp CCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS---
T ss_pred CCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc---
Confidence 444566554 99999999999999999999999999999 789999999999999999999999998765432
Q ss_pred cCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhC----CCCceEEEEeCCcchHHHHHHhc-CCCcEEEEChHHHHHhHhcC
Q 008207 181 KTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG----AVGLTSCCLYGGAPYHAQEFKLK-KGIDVVIGTPGRIKDHIERG 255 (574)
Q Consensus 181 ~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~----~~~~~~~~~~gg~~~~~~~~~l~-~~~~IlV~Tp~~l~~~l~~~ 255 (574)
...++++|||+||++|+.|+++.+..++. ...+.+..++||.....+...+. .+++|+|+||++|++++.+.
T Consensus 92 ---~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~ 168 (579)
T 3sqw_A 92 ---SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY 168 (579)
T ss_dssp ---STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH
T ss_pred ---ccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhc
Confidence 13456899999999999999999998752 34577889999998887777664 47999999999999999764
Q ss_pred -CccCCCceEEEecCchhhhcCCcHHHHHHHHHhccCc-----cCceEEEEeccCchhHHHHHHHhcccCCeEEEEec--
Q 008207 256 -NIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA-----NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVG-- 327 (574)
Q Consensus 256 -~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~-----~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~-- 327 (574)
...++.+++|||||||+|++++|..++..|+..++.. ..+|+++||||+++.+..+...++ ..+..+.+..
T Consensus 169 ~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l-~~~~~~~~~~~~ 247 (579)
T 3sqw_A 169 SNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIM-NKKECLFLDTVD 247 (579)
T ss_dssp HHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTC-CSSEEEEEESSC
T ss_pred cccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHc-CCCceEEEeecC
Confidence 4468899999999999999999999999998887542 257999999999999999988888 4444444332
Q ss_pred CcccccccceeEEEEeCCch--hhhhhh---hHHHHhhcCCCeEEEEecChHHHHHHHHhCC-------CCccccccCCH
Q 008207 328 NEKMKASTNVRHIVLPCSSS--ARSQVI---PDIIRCYSSGGRTIIFTETKESASQLADLLP-------GARALHGDIQQ 395 (574)
Q Consensus 328 ~~~~~~~~~i~~~~~~~~~~--~~~~~l---~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~-------~~~~lh~~~~~ 395 (574)
.........+.+.+..+... .....+ ...+.....+.++||||+|+..++.++..|. .+..+||+|++
T Consensus 248 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~ 327 (579)
T 3sqw_A 248 KNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQ 327 (579)
T ss_dssp SSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCH
T ss_pred ccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCH
Confidence 22233445566655554432 222233 3333333467899999999999999998885 46679999999
Q ss_pred HHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHH
Q 008207 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIE 474 (574)
Q Consensus 396 ~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~ 474 (574)
.+|..+++.|++|+.+|||||+++++|||+|+|++||+||+|.++..|+||+|||||.|+.|.|++|+++. ...+..++
T Consensus 328 ~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~ 407 (579)
T 3sqw_A 328 NKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELE 407 (579)
T ss_dssp HHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 78889999
Q ss_pred HHhCCcceecCCCC
Q 008207 475 RESGVKFEHISAPQ 488 (574)
Q Consensus 475 ~~~~~~~~~~~~~~ 488 (574)
+..+..+.....+.
T Consensus 408 ~~~~~~~~~~~~~~ 421 (579)
T 3sqw_A 408 DAKNIVIAKQEKYE 421 (579)
T ss_dssp HHHCCCCCEEEEEC
T ss_pred HHhCCCcccccCCC
Confidence 99988887765433
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=2.2e-57 Score=474.56 Aligned_cols=364 Identities=30% Similarity=0.476 Sum_probs=324.8
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCC
Q 008207 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (574)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (574)
....|+++++++.++++|.++||..|+|+|.++++.++.|+++++++|||||||++|++|++..+... ..
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~----------~~ 88 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK----------LN 88 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT----------SC
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc----------cC
Confidence 34679999999999999999999999999999999999999999999999999999999999887543 13
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEE
Q 008207 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (574)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lV 266 (574)
++++||++||++|+.|+++.+..++...++.+..++|+.....+...+..+++|+|+||++|.+++.++...+.++++||
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vI 168 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFI 168 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEE
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEE
Confidence 44699999999999999999999998889999999999998887777788899999999999999988888899999999
Q ss_pred ecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCc
Q 008207 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (574)
Q Consensus 267 lDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 346 (574)
+||||++.+.+|...+..++..++. ..|+++||||++..+......++. .+..+.+.. .....++.+.+..+..
T Consensus 169 iDEaH~~~~~~~~~~~~~i~~~~~~--~~~~i~lSAT~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~ 242 (400)
T 1s2m_A 169 MDEADKMLSRDFKTIIEQILSFLPP--THQSLLFSATFPLTVKEFMVKHLH-KPYEINLME---ELTLKGITQYYAFVEE 242 (400)
T ss_dssp EESHHHHSSHHHHHHHHHHHTTSCS--SCEEEEEESCCCHHHHHHHHHHCS-SCEEESCCS---SCBCTTEEEEEEECCG
T ss_pred EeCchHhhhhchHHHHHHHHHhCCc--CceEEEEEecCCHHHHHHHHHHcC-CCeEEEecc---ccccCCceeEEEEech
Confidence 9999999988888889999888876 689999999999999888888873 444333322 2344567788888888
Q ss_pred hhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEecccccc
Q 008207 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (574)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~G 422 (574)
..+...+..++... .++++||||++++.++.++..|. .+..+||++++.+|..+++.|++|+.+|||||+++++|
T Consensus 243 ~~k~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~G 321 (400)
T 1s2m_A 243 RQKLHCLNTLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRG 321 (400)
T ss_dssp GGHHHHHHHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSS
T ss_pred hhHHHHHHHHHhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccC
Confidence 88888888888765 56799999999999999999986 67789999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHHhCCcceecCCC
Q 008207 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487 (574)
Q Consensus 423 ldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~~ 487 (574)
+|+|++++||+||+|++...|+||+||+||.|+.|.|++|+++. ...+.++++.++.+++.++..
T Consensus 322 idip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 387 (400)
T 1s2m_A 322 IDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPAT 387 (400)
T ss_dssp CCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSS
T ss_pred CCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccccc
Confidence 99999999999999999999999999999999999999999998 778999999999999887643
No 6
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=6.3e-60 Score=505.39 Aligned_cols=368 Identities=31% Similarity=0.456 Sum_probs=174.8
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCC
Q 008207 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (574)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~--~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 185 (574)
...|.+++|++.+++.|..+||..|+|+|.++++.++.+ ++++++||||||||++|++|+++.+... .
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~----------~ 160 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA----------N 160 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT----------S
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc----------C
Confidence 457999999999999999999999999999999999987 9999999999999999999999877543 2
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHHhhCCC-CceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhc-CCccCCCce
Q 008207 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLSSLK 263 (574)
Q Consensus 186 ~~~~~Lil~PtreLa~Qv~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~-~~~~l~~~~ 263 (574)
.++++|||+||++|+.|+++.+..++... ++.+....|+...... ...+++|+|+||++|++++.+ +.+.+.+++
T Consensus 161 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~ 237 (479)
T 3fmp_B 161 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIK 237 (479)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCC
T ss_pred CCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCC
Confidence 34579999999999999999999887753 6778888887654322 234579999999999999966 556789999
Q ss_pred EEEecCchhhhc-CCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEE
Q 008207 264 FRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (574)
Q Consensus 264 ~lVlDEah~~l~-~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 342 (574)
+|||||||+|++ .+|...+..++..++. .+|+++||||++..+..+...++ ..+..+.+.... .....+.+.++
T Consensus 238 ~iViDEah~~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~i~~~~~~--~~~~~~~~~~~ 312 (479)
T 3fmp_B 238 VFVLDEADVMIATQGHQDQSIRIQRMLPR--NCQMLLFSATFEDSVWKFAQKVV-PDPNVIKLKREE--ETLDTIKQYYV 312 (479)
T ss_dssp EEEECCHHHHHTSTTHHHHHHHHHTTSCT--TSEEEEEESCCCHHHHHHHHHHS-SSEEEEEEC----------------
T ss_pred EEEEECHHHHhhcCCcHHHHHHHHhhCCc--cceEEEEeCCCCHHHHHHHHHHc-CCCeEEeccccc--cCcCCceEEEE
Confidence 999999999987 6888888888888876 78999999999999999999888 566666655432 34455666666
Q ss_pred eCCc-hhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEec
Q 008207 343 PCSS-SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (574)
Q Consensus 343 ~~~~-~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd 417 (574)
.+.. ..+...+..++... ..+++||||+++..++.++..|. .+..+||++++.+|..+++.|++|+.+|||||+
T Consensus 313 ~~~~~~~~~~~l~~~~~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~ 391 (479)
T 3fmp_B 313 LCSSRDEKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN 391 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeCCHHHHHHHHHHHHhhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc
Confidence 6554 45666666666654 56799999999999999999997 678999999999999999999999999999999
Q ss_pred cccccCCCCCCcEEEEeCCCC------CHhHHHHHhcccccCCCcceEEEEECCC--chHHHHHHHHhCCcceecCCCCH
Q 008207 418 VAARGLDINDVQLIIQCEPPR------DVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERESGVKFEHISAPQP 489 (574)
Q Consensus 418 ~~~~Gldi~~v~~VI~~d~p~------s~~~yiqr~GR~gR~g~~G~~i~l~~~~--~~~~~~i~~~~~~~~~~~~~~~~ 489 (574)
++++|||+|++++||+||+|. +...|+||+|||||.|+.|.|++|+++. ...+..+++.++.++..+.....
T Consensus 392 ~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 471 (479)
T 3fmp_B 392 VCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDL 471 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCccH
Confidence 999999999999999999995 6689999999999999999999999876 66788999999998888887766
Q ss_pred HHHHH
Q 008207 490 ADIAK 494 (574)
Q Consensus 490 ~~i~~ 494 (574)
+++.+
T Consensus 472 ~~~e~ 476 (479)
T 3fmp_B 472 DEIEK 476 (479)
T ss_dssp -----
T ss_pred HHHHh
Confidence 66553
No 7
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.4e-57 Score=478.26 Aligned_cols=365 Identities=30% Similarity=0.487 Sum_probs=308.8
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCC
Q 008207 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (574)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (574)
....|+++++++.+++.|.+.||..|+|+|.++++.++.|+|+++++|||||||++|++|+++.+.... .
T Consensus 38 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~----------~ 107 (414)
T 3eiq_A 38 IVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL----------K 107 (414)
T ss_dssp CCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS----------C
T ss_pred hhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC----------C
Confidence 346789999999999999999999999999999999999999999999999999999999998876532 3
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhc-CCCcEEEEChHHHHHhHhcCCccCCCceEE
Q 008207 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK-KGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (574)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~l 265 (574)
+.++||++||++|+.|+++.+..++...++.+..++|+.....+...+. .+++|+|+||++|++++.++.+.+.++++|
T Consensus 108 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~v 187 (414)
T 3eiq_A 108 ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMF 187 (414)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEE
T ss_pred ceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEE
Confidence 4569999999999999999999999888999999999998887776665 678999999999999999988889999999
Q ss_pred EecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCC
Q 008207 266 VLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (574)
Q Consensus 266 VlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 345 (574)
|+||||++++.+|...+..++..++. ..|+++||||++..+..+...++ ..+..+.... .......+.+.+..+.
T Consensus 188 ViDEah~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~ 262 (414)
T 3eiq_A 188 VLDEADEMLSRGFKDQIYDIFQKLNS--NTQVVLLSATMPSDVLEVTKKFM-RDPIRILVKK--EELTLEGIRQFYINVE 262 (414)
T ss_dssp EECSHHHHHHTTTHHHHHHHHTTSCT--TCEEEEECSCCCHHHHHHHTTTC-SSCEEECCCC--CCCCTTSCCEEEEECS
T ss_pred EEECHHHhhccCcHHHHHHHHHhCCC--CCeEEEEEEecCHHHHHHHHHHc-CCCEEEEecC--CccCCCCceEEEEEeC
Confidence 99999999999999999999998876 78999999999999998888887 4444443322 2344556666666665
Q ss_pred ch-hhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEecccc
Q 008207 346 SS-ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420 (574)
Q Consensus 346 ~~-~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~ 420 (574)
.. .+...+..++... ..+++||||++++.++.++..|. .+..+||++++.+|..+++.|++|+.+|||||++++
T Consensus 263 ~~~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 341 (414)
T 3eiq_A 263 REEWKLDTLCDLYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLA 341 (414)
T ss_dssp SSTTHHHHHHHHHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC
T ss_pred hHHhHHHHHHHHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccc
Confidence 44 4777777777765 56799999999999999999986 678999999999999999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHHhCCcceecCCC
Q 008207 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487 (574)
Q Consensus 421 ~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~~ 487 (574)
+|||+|++++||+||+|.+...|+||+||+||.|+.|.|++|+++. ...+..+++.++..+++++..
T Consensus 342 ~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (414)
T 3eiq_A 342 RGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLN 409 (414)
T ss_dssp --CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-
T ss_pred cCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChh
Confidence 9999999999999999999999999999999999999999999998 778999999999999887643
No 8
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.5e-56 Score=466.66 Aligned_cols=365 Identities=26% Similarity=0.414 Sum_probs=320.8
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 008207 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (574)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (574)
...|+++++++.++++|.++||..|+|+|.++++.++.|+++++.+|||+|||++|++|++..+.... .+
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~----------~~ 76 (391)
T 1xti_A 7 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT----------GQ 76 (391)
T ss_dssp --CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCT----------TC
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccC----------CC
Confidence 35699999999999999999999999999999999999999999999999999999999998875432 24
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCC-CceEEEEeCCcchHHHHHHhc-CCCcEEEEChHHHHHhHhcCCccCCCceEE
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLK-KGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~-~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~l 265 (574)
+++||++||++|+.|+++.+..+.... ++++..++|+.....+...+. ..++|+|+||++|..++.++.+.+.++++|
T Consensus 77 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~v 156 (391)
T 1xti_A 77 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHF 156 (391)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEE
T ss_pred eeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEE
Confidence 569999999999999999999987765 799999999998877766654 448999999999999999888889999999
Q ss_pred EecCchhhhcC-CcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeC
Q 008207 266 VLDEADEMLRM-GFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344 (574)
Q Consensus 266 VlDEah~~l~~-~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~ 344 (574)
|+||||++.+. ++...+..++...+. ..|+++||||++..+..+...++ ..+..+.+... .......+.+.+..+
T Consensus 157 ViDEaH~~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~ 232 (391)
T 1xti_A 157 ILDECDKMLEQLDMRRDVQEIFRMTPH--EKQVMMFSATLSKEIRPVCRKFM-QDPMEIFVDDE-TKLTLHGLQQYYVKL 232 (391)
T ss_dssp EECSHHHHTSSHHHHHHHHHHHHTSCS--SSEEEEEESSCCSTHHHHHHHHC-SSCEEEECCCC-CCCCCTTCEEEEEEC
T ss_pred EEeCHHHHhhccchHHHHHHHHhhCCC--CceEEEEEeeCCHHHHHHHHHHc-CCCeEEEecCc-cccCcccceEEEEEc
Confidence 99999999874 788888888888776 68999999999999999988888 45555544332 223445677888888
Q ss_pred CchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEecccc
Q 008207 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420 (574)
Q Consensus 345 ~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~ 420 (574)
....+...+..++... .++++||||+++..++.++..|. .+..+||++++.+|..+++.|++|+.+|||||++++
T Consensus 233 ~~~~~~~~l~~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~ 311 (391)
T 1xti_A 233 KDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFG 311 (391)
T ss_dssp CGGGHHHHHHHHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCS
T ss_pred CchhHHHHHHHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhh
Confidence 8888888888888776 67899999999999999999986 567899999999999999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC--chHHHHHHHHhCCcceecCCC
Q 008207 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERESGVKFEHISAP 487 (574)
Q Consensus 421 ~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~--~~~~~~i~~~~~~~~~~~~~~ 487 (574)
+|+|+|++++||+|++|++...|+||+||+||.|+.|.|++|+++. ...+..+++.++.++++++..
T Consensus 312 ~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 312 RGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp SCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 9999999999999999999999999999999999999999999987 466889999999998887653
No 9
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.5e-57 Score=496.90 Aligned_cols=370 Identities=29% Similarity=0.458 Sum_probs=305.9
Q ss_pred CcccccC----CCHHHHHHHHHCCCCCCcHHHHHHHHHHh--cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccC
Q 008207 109 NAVSRFR----ISVPLREKLKSKGIESLFPIQAMTFDMVL--DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKT 182 (574)
Q Consensus 109 ~~~~~~~----l~~~l~~~l~~~g~~~~~~~Q~~~i~~il--~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~ 182 (574)
..|.++. |++.++++|...||..|+|+|.++|+.++ .++|++++||||||||++|++|+++.+......
T Consensus 68 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~----- 142 (563)
T 3i5x_A 68 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD----- 142 (563)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-----
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc-----
Confidence 3455553 99999999999999999999999999999 678999999999999999999999998765432
Q ss_pred CCCCCCeEEEEeCcHHHHHHHHHHHHHhhC----CCCceEEEEeCCcchHHHHHHh-cCCCcEEEEChHHHHHhHhcC-C
Q 008207 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGG----AVGLTSCCLYGGAPYHAQEFKL-KKGIDVVIGTPGRIKDHIERG-N 256 (574)
Q Consensus 183 ~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~----~~~~~~~~~~gg~~~~~~~~~l-~~~~~IlV~Tp~~l~~~l~~~-~ 256 (574)
...++++|||+||++||.|+++.+..+.. ...+.+..++||.....+...+ ..+++|+|+||++|++++.+. .
T Consensus 143 -~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~ 221 (563)
T 3i5x_A 143 -SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSN 221 (563)
T ss_dssp -STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHH
T ss_pred -ccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccc
Confidence 13456899999999999999999988643 2356788899999887776665 447999999999999998764 3
Q ss_pred ccCCCceEEEecCchhhhcCCcHHHHHHHHHhccC-----ccCceEEEEeccCchhHHHHHHHhcccCCeEEEEec--Cc
Q 008207 257 IDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED-----ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVG--NE 329 (574)
Q Consensus 257 ~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~-----~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~--~~ 329 (574)
..++.+++|||||||+|++++|...+..++..++. .+.+|+++||||++..+..+...++. .+..+.+.. ..
T Consensus 222 ~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~-~~~~~~~~~~~~~ 300 (563)
T 3i5x_A 222 KFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMN-KKECLFLDTVDKN 300 (563)
T ss_dssp HHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCC-SSEEEEEESSCSS
T ss_pred cccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcC-CCceEEEeccCCC
Confidence 45888999999999999999999999999887743 22579999999999999998888883 444444332 22
Q ss_pred ccccccceeEEEEeCCch--hhhhhhh---HHHHhhcCCCeEEEEecChHHHHHHHHhCC-------CCccccccCCHHH
Q 008207 330 KMKASTNVRHIVLPCSSS--ARSQVIP---DIIRCYSSGGRTIIFTETKESASQLADLLP-------GARALHGDIQQSQ 397 (574)
Q Consensus 330 ~~~~~~~i~~~~~~~~~~--~~~~~l~---~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~-------~~~~lh~~~~~~~ 397 (574)
.......+.+.+...... .....+. ..+.....+.++||||+|+..++.++..|. .+..+||+|++.+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~ 380 (563)
T 3i5x_A 301 EPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNK 380 (563)
T ss_dssp SCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHH
T ss_pred CccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHH
Confidence 223444555655554432 2222222 333333567899999999999999998885 4667999999999
Q ss_pred HHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHH
Q 008207 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERE 476 (574)
Q Consensus 398 r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~ 476 (574)
|..+++.|++|+.+|||||+++++|||+|+|++||+||+|.++..|+||+|||||.|+.|.|++|+.+. ...++.+++.
T Consensus 381 R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~ 460 (563)
T 3i5x_A 381 RTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDA 460 (563)
T ss_dssp HHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988 7888999999
Q ss_pred hCCcceecC
Q 008207 477 SGVKFEHIS 485 (574)
Q Consensus 477 ~~~~~~~~~ 485 (574)
.+..+....
T Consensus 461 ~~~~~~~~~ 469 (563)
T 3i5x_A 461 KNIVIAKQE 469 (563)
T ss_dssp HCCCCCEEE
T ss_pred hCCCccccc
Confidence 888887665
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.9e-56 Score=467.68 Aligned_cols=369 Identities=30% Similarity=0.449 Sum_probs=311.4
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCC
Q 008207 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (574)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~--~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~ 184 (574)
....|+++++++.++++|.+.||..|+|+|.++++.++.+ ++++++||||||||++|++|+++.+....
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~--------- 93 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN--------- 93 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS---------
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC---------
Confidence 4567999999999999999999999999999999999987 99999999999999999999998886542
Q ss_pred CCCCeEEEEeCcHHHHHHHHHHHHHhhCCC-CceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhc-CCccCCCc
Q 008207 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLSSL 262 (574)
Q Consensus 185 ~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~-~~~~l~~~ 262 (574)
.++++||++||++|+.|+++.+..++... ++.+....|+...... ....++|+|+||++|++++.+ +.+.+.++
T Consensus 94 -~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~ 169 (412)
T 3fht_A 94 -KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKI 169 (412)
T ss_dssp -CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGC
T ss_pred -CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhC
Confidence 34579999999999999999999887653 6788888887765432 244689999999999999865 56678899
Q ss_pred eEEEecCchhhhc-CCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEE
Q 008207 263 KFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV 341 (574)
Q Consensus 263 ~~lVlDEah~~l~-~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~ 341 (574)
++||+||||++++ .++...+..++..++. ..|+++||||++..+..+...++ ..+..+.+... ......+.+.+
T Consensus 170 ~~iViDEah~~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~ 244 (412)
T 3fht_A 170 KVFVLDEADVMIATQGHQDQSIRIQRMLPR--NCQMLLFSATFEDSVWKFAQKVV-PDPNVIKLKRE--EETLDTIKQYY 244 (412)
T ss_dssp CEEEEETHHHHHSTTTTHHHHHHHHHTSCT--TCEEEEEESCCCHHHHHHHHHHS-SSCEEECCCGG--GSSCTTEEEEE
T ss_pred cEEEEeCHHHHhhcCCcHHHHHHHHhhCCC--CceEEEEEeecCHHHHHHHHHhc-CCCeEEeeccc--cccccCceEEE
Confidence 9999999999987 6888888888888876 78999999999999999999888 45655554432 24455666766
Q ss_pred EeCCc-hhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEe
Q 008207 342 LPCSS-SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416 (574)
Q Consensus 342 ~~~~~-~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT 416 (574)
..+.. ..+...+..++... .++++||||+++..++.++..|. .+..+||++++.+|..+++.|++|+.+|||||
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 323 (412)
T 3fht_A 245 VLCSSRDEKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT 323 (412)
T ss_dssp EECSSHHHHHHHHHHHHHHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred EEcCChHHHHHHHHHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEc
Confidence 66554 55667777777765 56799999999999999999986 67899999999999999999999999999999
Q ss_pred ccccccCCCCCCcEEEEeCCC------CCHhHHHHHhcccccCCCcceEEEEECCC--chHHHHHHHHhCCcceecCCCC
Q 008207 417 NVAARGLDINDVQLIIQCEPP------RDVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERESGVKFEHISAPQ 488 (574)
Q Consensus 417 d~~~~Gldi~~v~~VI~~d~p------~s~~~yiqr~GR~gR~g~~G~~i~l~~~~--~~~~~~i~~~~~~~~~~~~~~~ 488 (574)
+++++|+|+|++++||+||+| .+...|+||+||+||.|+.|.|++|+++. ...+..+++.++..++.+..+.
T Consensus 324 ~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 403 (412)
T 3fht_A 324 NVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDD 403 (412)
T ss_dssp GGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC----
T ss_pred CccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCcc
Confidence 999999999999999999999 46789999999999999999999999976 5678899999999999998877
Q ss_pred HHHHHH
Q 008207 489 PADIAK 494 (574)
Q Consensus 489 ~~~i~~ 494 (574)
.+++.+
T Consensus 404 ~~~~~~ 409 (412)
T 3fht_A 404 LDEIEK 409 (412)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 766643
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=8.6e-56 Score=461.23 Aligned_cols=367 Identities=28% Similarity=0.468 Sum_probs=318.7
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCC
Q 008207 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (574)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~--~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 185 (574)
..+|++++|++.++++|.+.||..|+|+|.++++.++.+ ++++++||||||||++|++|++..+... .
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~----------~ 73 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE----------D 73 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT----------C
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC----------C
Confidence 467999999999999999999999999999999999988 9999999999999999999999887543 2
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEE
Q 008207 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (574)
Q Consensus 186 ~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~l 265 (574)
.++++||++||++|+.|+++.+..++...++.+...+|+..... ...+++|+|+||++|.+++.++.+.+.++++|
T Consensus 74 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~i 149 (395)
T 3pey_A 74 ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIF 149 (395)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEE
T ss_pred CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcCCcccccCCEE
Confidence 34579999999999999999999999888899888888764322 23368999999999999999888889999999
Q ss_pred EecCchhhhc-CCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeC
Q 008207 266 VLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344 (574)
Q Consensus 266 VlDEah~~l~-~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~ 344 (574)
|+||||++.+ .++...+..+...++. ..|+++||||++..+..+...++ ..+..+..... ......+.+.+..+
T Consensus 150 IiDEah~~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~ 224 (395)
T 3pey_A 150 VLDEADNMLDQQGLGDQCIRVKRFLPK--DTQLVLFSATFADAVRQYAKKIV-PNANTLELQTN--EVNVDAIKQLYMDC 224 (395)
T ss_dssp EEETHHHHHHSTTHHHHHHHHHHTSCT--TCEEEEEESCCCHHHHHHHHHHS-CSCEEECCCGG--GCSCTTEEEEEEEC
T ss_pred EEEChhhhcCccccHHHHHHHHHhCCC--CcEEEEEEecCCHHHHHHHHHhC-CCCeEEEcccc--ccccccccEEEEEc
Confidence 9999999988 7888888888888876 68999999999999999988887 45554444332 24445666766666
Q ss_pred C-chhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccc
Q 008207 345 S-SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419 (574)
Q Consensus 345 ~-~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~ 419 (574)
. ...+...+..++... .++++||||+++..++.++..|. .+..+||++++.+|..+++.|++|+.+|||||+++
T Consensus 225 ~~~~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 303 (395)
T 3pey_A 225 KNEADKFDVLTELYGLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVL 303 (395)
T ss_dssp SSHHHHHHHHHHHHTTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGG
T ss_pred CchHHHHHHHHHHHHhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChh
Confidence 4 445666676666654 66899999999999999999986 68899999999999999999999999999999999
Q ss_pred cccCCCCCCcEEEEeCCCC------CHhHHHHHhcccccCCCcceEEEEECCC--chHHHHHHHHhC-CcceecCCCCHH
Q 008207 420 ARGLDINDVQLIIQCEPPR------DVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERESG-VKFEHISAPQPA 490 (574)
Q Consensus 420 ~~Gldi~~v~~VI~~d~p~------s~~~yiqr~GR~gR~g~~G~~i~l~~~~--~~~~~~i~~~~~-~~~~~~~~~~~~ 490 (574)
++|+|+|++++||+||+|+ ++..|+||+||+||.|+.|.|++|+++. ...+..+++.++ ..+..+..+..+
T Consensus 304 ~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 383 (395)
T 3pey_A 304 ARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWD 383 (395)
T ss_dssp SSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCSSCHH
T ss_pred hcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCChHHHH
Confidence 9999999999999999999 9999999999999999999999999976 567888999988 888888888877
Q ss_pred HHHH
Q 008207 491 DIAK 494 (574)
Q Consensus 491 ~i~~ 494 (574)
.+.+
T Consensus 384 ~~~~ 387 (395)
T 3pey_A 384 EVEK 387 (395)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 12
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.2e-55 Score=452.33 Aligned_cols=355 Identities=35% Similarity=0.594 Sum_probs=317.1
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 008207 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (574)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~-~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (574)
.+|+++++++.+++.|.+.||..|+|+|.++++.++++ +++++.+|||||||++|++|++..+... .+
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-----------~~ 74 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-----------NG 74 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-----------SS
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-----------CC
Confidence 46999999999999999999999999999999999988 7999999999999999999999877542 23
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEe
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVl 267 (574)
.++||++||++|+.|+++.+..+....++.+..++|+.....+...+. +++|+|+||++|.+++.++.+.+.++++||+
T Consensus 75 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 75 IEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFIL 153 (367)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEE
T ss_pred CcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEE
Confidence 469999999999999999999998888899999999998877666555 5899999999999999988888999999999
Q ss_pred cCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCch
Q 008207 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (574)
Q Consensus 268 DEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 347 (574)
||||++.+.+|...+..++..++. ..++++||||++..+......++ ..+..+... ...++.+.+..+...
T Consensus 154 DEah~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~ 224 (367)
T 1hv8_A 154 DEADEMLNMGFIKDVEKILNACNK--DKRILLFSATMPREILNLAKKYM-GDYSFIKAK------INANIEQSYVEVNEN 224 (367)
T ss_dssp ETHHHHHTTTTHHHHHHHHHTSCS--SCEEEEECSSCCHHHHHHHHHHC-CSEEEEECC------SSSSSEEEEEECCGG
T ss_pred eCchHhhhhchHHHHHHHHHhCCC--CceEEEEeeccCHHHHHHHHHHc-CCCeEEEec------CCCCceEEEEEeChH
Confidence 999999999999999999988876 68999999999999888888887 344444322 223667777888888
Q ss_pred hhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccC
Q 008207 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423 (574)
Q Consensus 348 ~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gl 423 (574)
.+...+..++. ..+.++||||+++..++.++..|. .+..+||++++.+|..+++.|++|+.+|||||+++++|+
T Consensus 225 ~~~~~l~~~l~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gi 302 (367)
T 1hv8_A 225 ERFEALCRLLK--NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGI 302 (367)
T ss_dssp GHHHHHHHHHC--STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHC
T ss_pred HHHHHHHHHHh--cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCC
Confidence 88888877776 466899999999999999999986 677899999999999999999999999999999999999
Q ss_pred CCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHHhCCcceecCC
Q 008207 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISA 486 (574)
Q Consensus 424 di~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~ 486 (574)
|+|++++||+|++|+++..|+||+||+||.|+.|.|++++++. ...+..+++.++.+++.+..
T Consensus 303 d~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 366 (367)
T 1hv8_A 303 DVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLKF 366 (367)
T ss_dssp CCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC-
T ss_pred CcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceecc
Confidence 9999999999999999999999999999999999999999998 77899999999999887653
No 13
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.1e-56 Score=468.08 Aligned_cols=363 Identities=28% Similarity=0.464 Sum_probs=183.1
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 008207 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (574)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (574)
...|+++++++.+++.|...||..|+|+|.++++.++.|+++++++|||+|||++|++|+++.+... ..+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~----------~~~ 89 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS----------VKA 89 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT----------CCS
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc----------CCC
Confidence 3569999999999999999999999999999999999999999999999999999999999887543 234
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEe
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVl 267 (574)
+++||++||++|+.|+++.+..++...++.+..++|+.........+. +++|+|+||++|++.+.++.+.+.++++||+
T Consensus 90 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 90 PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 579999999999999999999998888999999999998776655554 5899999999999999988888999999999
Q ss_pred cCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCch
Q 008207 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (574)
Q Consensus 268 DEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 347 (574)
||||++.+.+|...+..++..++. ..|+++||||++..+..+...++ ..+..+..... ......+.+.+..+...
T Consensus 169 DEah~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 243 (394)
T 1fuu_A 169 DEADEMLSSGFKEQIYQIFTLLPP--TTQVVLLSATMPNDVLEVTTKFM-RNPVRILVKKD--ELTLEGIKQFYVNVEEE 243 (394)
T ss_dssp ETHHHHHHTTCHHHHHHHHHHSCT--TCEEEEECSSCCHHHHHHHHHHC-CSCEEEEECC--------------------
T ss_pred EChHHhhCCCcHHHHHHHHHhCCC--CceEEEEEEecCHHHHHHHHHhc-CCCeEEEecCc--cccCCCceEEEEEcCch
Confidence 999999999999999999998876 68999999999999988888888 45555444332 23334555555544443
Q ss_pred h-hhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEecccccc
Q 008207 348 A-RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (574)
Q Consensus 348 ~-~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~G 422 (574)
. +...+..++... .++++||||++++.++.++..|. .+..+||++++.+|..+++.|++|+.+|||||+++++|
T Consensus 244 ~~~~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~G 322 (394)
T 1fuu_A 244 EYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARG 322 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcC
Confidence 3 566666666654 56799999999999999999997 57889999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHHhCCcceecCCC
Q 008207 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487 (574)
Q Consensus 423 ldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~~ 487 (574)
+|+|++++||+||+|+++..|+||+||+||.|+.|.|++|+++. ...+..+++.++.+++.++.+
T Consensus 323 ldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 388 (394)
T 1fuu_A 323 IDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 388 (394)
T ss_dssp ------------------------------------------------------------------
T ss_pred CCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcc
Confidence 99999999999999999999999999999999999999999988 677889999888888776543
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.5e-53 Score=434.74 Aligned_cols=335 Identities=34% Similarity=0.590 Sum_probs=289.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeC
Q 008207 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195 (574)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~P 195 (574)
|++.+.++|.++||..|+|+|.++++.+++++++++.+|||+|||++|++|+++. +.++||++|
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~----------------~~~~liv~P 64 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----------------GMKSLVVTP 64 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH----------------TCCEEEECS
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh----------------cCCEEEEeC
Confidence 5789999999999999999999999999999999999999999999999999864 124899999
Q ss_pred cHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhc
Q 008207 196 TRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275 (574)
Q Consensus 196 treLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~ 275 (574)
+++|+.|+++.+..++...++.+..++|+.....+...+.. ++|+|+||++|.+++.++.+.+.++++||+||||++.+
T Consensus 65 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 143 (337)
T 2z0m_A 65 TRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFE 143 (337)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhc
Confidence 99999999999999998889999999999988776666554 99999999999999988888889999999999999999
Q ss_pred CCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhhhhhhhH
Q 008207 276 MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355 (574)
Q Consensus 276 ~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ 355 (574)
++|...+..++..++. ..++++||||++..+......++. .+..+... ....++.+.+..+....+.. ..
T Consensus 144 ~~~~~~~~~~~~~~~~--~~~~~~~SAT~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~ 213 (337)
T 2z0m_A 144 MGFIDDIKIILAQTSN--RKITGLFSATIPEEIRKVVKDFIT-NYEEIEAC-----IGLANVEHKFVHVKDDWRSK--VQ 213 (337)
T ss_dssp TTCHHHHHHHHHHCTT--CSEEEEEESCCCHHHHHHHHHHSC-SCEEEECS-----GGGGGEEEEEEECSSSSHHH--HH
T ss_pred cccHHHHHHHHhhCCc--ccEEEEEeCcCCHHHHHHHHHhcC-Cceeeecc-----cccCCceEEEEEeChHHHHH--HH
Confidence 9999999999998876 678999999999999888888883 44444221 23345666666554433221 23
Q ss_pred HHHhhcCCCeEEEEecChHHHHHHHHhCCCCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEeC
Q 008207 356 IIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCE 435 (574)
Q Consensus 356 ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d 435 (574)
.+.. ..++++||||++++.++.++..|..+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|+
T Consensus 214 ~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~ 292 (337)
T 2z0m_A 214 ALRE-NKDKGVIVFVRTRNRVAKLVRLFDNAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFD 292 (337)
T ss_dssp HHHT-CCCSSEEEECSCHHHHHHHHTTCTTEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESS
T ss_pred HHHh-CCCCcEEEEEcCHHHHHHHHHHhhhhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEec
Confidence 3333 367899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHhHHHHHhcccccCCCcceEEEEECCCchHHHHHHHHhC
Q 008207 436 PPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSKIERESG 478 (574)
Q Consensus 436 ~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~~~~~~~i~~~~~ 478 (574)
+|+++..|+||+||+||.|+.|.|++|+..+...++.+++.++
T Consensus 293 ~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 293 APQDLRTYIHRIGRTGRMGRKGEAITFILNEYWLEKEVKKVSQ 335 (337)
T ss_dssp CCSSHHHHHHHHTTBCGGGCCEEEEEEESSCHHHHHHHC----
T ss_pred CCCCHHHhhHhcCccccCCCCceEEEEEeCcHHHHHHHHHHhc
Confidence 9999999999999999999999999999944667777776654
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.6e-51 Score=446.43 Aligned_cols=333 Identities=21% Similarity=0.273 Sum_probs=269.8
Q ss_pred CCCcccccCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCC
Q 008207 107 HPNAVSRFRISVPLREKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (574)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 185 (574)
..+.+.+|++++.+.+.|+. .||..|+|+|.++|+.++.|+|+++.+|||+|||++|++|++..
T Consensus 19 ~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~--------------- 83 (591)
T 2v1x_A 19 AAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS--------------- 83 (591)
T ss_dssp GGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS---------------
T ss_pred hccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc---------------
Confidence 34456679999999999998 69999999999999999999999999999999999999999842
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHH------hcCCCcEEEEChHHHH------HhHh
Q 008207 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK------LKKGIDVVIGTPGRIK------DHIE 253 (574)
Q Consensus 186 ~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~------l~~~~~IlV~Tp~~l~------~~l~ 253 (574)
..++|||+|+++|+.|+.+.+..+ ++.+..+.|+.+....... ....++|+|+||++|. +++.
T Consensus 84 -~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~ 158 (591)
T 2v1x_A 84 -DGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLE 158 (591)
T ss_dssp -SSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHH
T ss_pred -CCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHH
Confidence 226999999999999999999887 5788889998876654332 2467999999999874 2333
Q ss_pred cCCccCCCceEEEecCchhhhcCC--cHHHHHH--HHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCc
Q 008207 254 RGNIDLSSLKFRVLDEADEMLRMG--FVEDVEL--ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNE 329 (574)
Q Consensus 254 ~~~~~l~~~~~lVlDEah~~l~~~--~~~~~~~--il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~ 329 (574)
+ ...+.++++|||||||+++++| |...+.. ++.... +..++++||||++..+......++...... .+...
T Consensus 159 ~-~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~--~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~-~~~~~- 233 (591)
T 2v1x_A 159 K-AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQF--PNASLIGLTATATNHVLTDAQKILCIEKCF-TFTAS- 233 (591)
T ss_dssp H-HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHC--TTSEEEEEESSCCHHHHHHHHHHTTCCSCE-EEECC-
T ss_pred h-hhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhC--CCCcEEEEecCCCHHHHHHHHHHhCCCCcE-EEecC-
Confidence 2 3457789999999999999988 7776654 232222 257999999999999888888777433322 22221
Q ss_pred ccccccceeEEEEeCCc--hhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHH
Q 008207 330 KMKASTNVRHIVLPCSS--SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLA 403 (574)
Q Consensus 330 ~~~~~~~i~~~~~~~~~--~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~ 403 (574)
....++...+..... ..+...+..++.....++++||||+|++.++.++..|. .+..+||+|++.+|..+++
T Consensus 234 --~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~ 311 (591)
T 2v1x_A 234 --FNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHR 311 (591)
T ss_dssp --CCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred --CCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHH
Confidence 223344443333322 23344555555544467899999999999999999986 6789999999999999999
Q ss_pred HHhCCCccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 404 ~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
.|++|+.+|||||+++++|||+|+|++||+|++|.|.+.|+||+|||||.|++|.|++|+++.
T Consensus 312 ~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~ 374 (591)
T 2v1x_A 312 KWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFG 374 (591)
T ss_dssp HHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHH
T ss_pred HHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChH
Confidence 999999999999999999999999999999999999999999999999999999999999875
No 16
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-52 Score=449.19 Aligned_cols=364 Identities=26% Similarity=0.457 Sum_probs=258.2
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 008207 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (574)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~--~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (574)
.+...++++.+++.|.+.||..|+++|.++++.++.+ ++++++||||||||++|++|++..+.... .+
T Consensus 120 ~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~----------~~ 189 (508)
T 3fho_A 120 XXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASV----------PK 189 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC----------CS
T ss_pred cccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCC----------CC
Confidence 3555678899999999999999999999999999998 99999999999999999999999886542 34
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEe
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVl 267 (574)
+++||++|+++|+.|+++.+..++...++.+...+++.... ....+++|+|+||++|.+++.++.+.+.++++||+
T Consensus 190 ~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIi 265 (508)
T 3fho_A 190 PQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPK----GAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVL 265 (508)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred ceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccc----cccCCCCEEEECHHHHHHHHHcCCccccCCCEEEE
Confidence 57999999999999999999999887777777666654332 22346899999999999999988888999999999
Q ss_pred cCchhhhc-CCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeC-C
Q 008207 268 DEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC-S 345 (574)
Q Consensus 268 DEah~~l~-~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~-~ 345 (574)
||||++.+ .++...+..++..++. ..|+++||||++..+..+...++ ..+..+.+.... .....+.+.+..+ .
T Consensus 266 DEaH~~~~~~~~~~~~~~i~~~~~~--~~~~i~lSAT~~~~~~~~~~~~~-~~~~~i~~~~~~--~~~~~~~~~~~~~~~ 340 (508)
T 3fho_A 266 DEADNMLDQQGLGDQSMRIKHLLPR--NTQIVLFSATFSERVEKYAERFA-PNANEIRLKTEE--LSVEGIKQLYMDCQS 340 (508)
T ss_dssp CCHHHHTTC--CHHHHHHHHHHSCT--TCEEEEEESCCSTHHHHHHHHHS-TTCEEECCCCCC------CCCCEEEEC--
T ss_pred echhhhcccCCcHHHHHHHHHhCCc--CCeEEEEeCCCCHHHHHHHHHhc-CCCeEEEecccc--CCcccceEEEEECCc
Confidence 99999987 6789999999998876 78999999999999999988887 455555443322 3334455555554 3
Q ss_pred chhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccc
Q 008207 346 SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421 (574)
Q Consensus 346 ~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~ 421 (574)
...+...+..++... .++++||||+++..++.++..|. .+..+||++++.+|..+++.|++|+.+|||||+++++
T Consensus 341 ~~~k~~~l~~ll~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~ 419 (508)
T 3fho_A 341 EEHKYNVLVELYGLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIAR 419 (508)
T ss_dssp CHHHHHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC----
T ss_pred hHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhc
Confidence 455666677776654 56899999999999999999987 6789999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEeCCC------CCHhHHHHHhcccccCCCcceEEEEECCC--chHHHHHHHHhCCcceecCCCCHHHHH
Q 008207 422 GLDINDVQLIIQCEPP------RDVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERESGVKFEHISAPQPADIA 493 (574)
Q Consensus 422 Gldi~~v~~VI~~d~p------~s~~~yiqr~GR~gR~g~~G~~i~l~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~i~ 493 (574)
|+|+|++++||+||+| .+...|+||+||+||.|+.|.|++|+++. ...+..+++.++..++++..+..+++.
T Consensus 420 GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~ 499 (508)
T 3fho_A 420 GIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDDYEELE 499 (508)
T ss_dssp -CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC-----------
T ss_pred CCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCccHHHHH
Confidence 9999999999999999 88999999999999999999999999865 677899999999999988876655544
No 17
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=7.6e-51 Score=426.98 Aligned_cols=340 Identities=18% Similarity=0.294 Sum_probs=268.6
Q ss_pred HHHHHHHHC-CCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcH
Q 008207 119 PLREKLKSK-GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197 (574)
Q Consensus 119 ~l~~~l~~~-g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr 197 (574)
.+.+.+++. || +|+|+|.++++.++.|+|++++||||||||++|++|++..+.. ++++|||+||+
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~-------------~~~~lil~Pt~ 74 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK-------------GKKSALVFPTV 74 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTT-------------TCCEEEEESSH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcC-------------CCEEEEEECCH
Confidence 344555553 55 8999999999999999999999999999999999999887632 34699999999
Q ss_pred HHHHHHHHHHHHhhCCCCceEEEEeCCcch---HHHHHHhcCC-CcEEEEChHHHHHhHhcCCccCCCceEEEecCchhh
Q 008207 198 ELAKQVHEDFDVYGGAVGLTSCCLYGGAPY---HAQEFKLKKG-IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (574)
Q Consensus 198 eLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~---~~~~~~l~~~-~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~ 273 (574)
+|+.|+++.+..++. .++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++||+||||++
T Consensus 75 ~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~ 151 (414)
T 3oiy_A 75 TLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAV 151 (414)
T ss_dssp HHHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHH
T ss_pred HHHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhh
Confidence 999999999999987 88999999999988 4555556554 99999999999998875 66789999999999765
Q ss_pred h----------c-CCcHHH-HHHHHHhcc---------CccCceEEEEecc-CchhHH-HHHHHhcccCCeEEEEecCcc
Q 008207 274 L----------R-MGFVED-VELILGKVE---------DANKVQTLLFSAT-LPSWVK-HISTKFLKSDKKTIDLVGNEK 330 (574)
Q Consensus 274 l----------~-~~~~~~-~~~il~~l~---------~~~~~q~ll~SAT-~~~~~~-~~~~~~~~~~~~~i~~~~~~~ 330 (574)
. + ++|..+ +..++..++ ..+..|+++|||| .|..+. .+...++. + .....
T Consensus 152 ~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-----~--~~~~~ 224 (414)
T 3oiy_A 152 LKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-----F--TVGRL 224 (414)
T ss_dssp HHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS-----C--CSSCC
T ss_pred hhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc-----c--CcCcc
Confidence 4 4 888888 788888775 1136899999999 665544 33334432 1 11122
Q ss_pred cccccceeEEEEeCCchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCc-cccccCCHHHHHHHHHHH
Q 008207 331 MKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GAR-ALHGDIQQSQREVTLAGF 405 (574)
Q Consensus 331 ~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~-~lh~~~~~~~r~~~~~~F 405 (574)
.....++.+.+..+ .+...+..++... ++++||||+++..++.++..|. .+. .+||. +|. ++.|
T Consensus 225 ~~~~~~i~~~~~~~---~~~~~l~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f 293 (414)
T 3oiy_A 225 VSVARNITHVRISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDF 293 (414)
T ss_dssp CCCCCSEEEEEESS---CCHHHHHHHHHHH--CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHH
T ss_pred ccccccchheeecc---CHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHH
Confidence 24455677777766 3455566777663 4899999999999999999986 455 78885 444 9999
Q ss_pred hCCCccEEEE----eccccccCCCCC-CcEEEEeCCC--CCHhHHHHHhcccccCC----CcceEEEEECCCchHHHHHH
Q 008207 406 RSGKFMTLVA----TNVAARGLDIND-VQLIIQCEPP--RDVEAYIHRSGRTGRAG----NTGVAVMLYDPRKSSVSKIE 474 (574)
Q Consensus 406 ~~g~~~vLva----Td~~~~Gldi~~-v~~VI~~d~p--~s~~~yiqr~GR~gR~g----~~G~~i~l~~~~~~~~~~i~ 474 (574)
++|+++|||| |+++++|||+|+ |++||+||+| .+...|+||+|||||.| +.|.|++|+ .+...+..++
T Consensus 294 ~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~-~~~~~~~~l~ 372 (414)
T 3oiy_A 294 KVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE-EDEEIFESLK 372 (414)
T ss_dssp HTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC-CCHHHHHHHH
T ss_pred hCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE-ccHHHHHHHH
Confidence 9999999999 999999999999 9999999999 99999999999999998 589999999 3456677777
Q ss_pred HHhC----CcceecCCCCHHHHHH
Q 008207 475 RESG----VKFEHISAPQPADIAK 494 (574)
Q Consensus 475 ~~~~----~~~~~~~~~~~~~i~~ 494 (574)
+.++ ..+..+......++.+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~ 396 (414)
T 3oiy_A 373 TRLLLIAEEEIIEEAEANWKELVH 396 (414)
T ss_dssp HHHHHHHCCCEEEGGGCCHHHHHH
T ss_pred HHhcccccccccccccccHHHHHH
Confidence 7766 3444444444444443
No 18
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-51 Score=470.44 Aligned_cols=336 Identities=21% Similarity=0.241 Sum_probs=266.1
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 008207 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (574)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (574)
+..|..+++++.+...+...++..|+|+|.++|+.++.|+++|++|+||||||++|++|++..+..+
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g------------- 227 (1108)
T 3l9o_A 161 PPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK------------- 227 (1108)
T ss_dssp SSCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTT-------------
T ss_pred CCCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcC-------------
Confidence 4567777888887777777888899999999999999999999999999999999999999988543
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEe
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVl 267 (574)
.++||++|||+|+.|+++.+..++. .+..++|+.+. ..+++|+|+|||+|++++.++...+.++++|||
T Consensus 228 ~rvlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVI 296 (1108)
T 3l9o_A 228 QRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIF 296 (1108)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEE
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEE
Confidence 3699999999999999999998764 57778888764 356999999999999999998888899999999
Q ss_pred cCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchh--HHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCC
Q 008207 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSW--VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (574)
Q Consensus 268 DEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 345 (574)
||||+|.+++|...+..++..++. .+|+++||||+|.. +..+...+.. .+..+.... ..+..+.++++...
T Consensus 297 DEaH~l~d~~rg~~~e~ii~~l~~--~~qvl~lSATipn~~e~a~~l~~~~~-~~~~vi~~~----~rp~pl~~~~~~~~ 369 (1108)
T 3l9o_A 297 DEVHYMRDKERGVVWEETIILLPD--KVRYVFLSATIPNAMEFAEWICKIHS-QPCHIVYTN----FRPTPLQHYLFPAH 369 (1108)
T ss_dssp ETGGGTTSHHHHHHHHHHHHHSCT--TSEEEEEECSCSSCHHHHHHHHHHTC-SCEEEEEEC----CCSSCEEEEEEETT
T ss_pred hhhhhccccchHHHHHHHHHhcCC--CceEEEEcCCCCCHHHHHHHHHhhcC-CCeEEEecC----CCcccceEEEeecC
Confidence 999999999999999999999986 78999999999875 3344444442 222222221 11122333332211
Q ss_pred chh-------------------------------------------------h---hhhhhHHHHhh--cCCCeEEEEec
Q 008207 346 SSA-------------------------------------------------R---SQVIPDIIRCY--SSGGRTIIFTE 371 (574)
Q Consensus 346 ~~~-------------------------------------------------~---~~~l~~ll~~~--~~~~~~lVF~~ 371 (574)
... + ...+..++... ...+++||||+
T Consensus 370 ~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~ 449 (1108)
T 3l9o_A 370 GDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSF 449 (1108)
T ss_dssp SSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeC
Confidence 000 0 12222232221 24569999999
Q ss_pred ChHHHHHHHHhCCC-------------------------------------------CccccccCCHHHHHHHHHHHhCC
Q 008207 372 TKESASQLADLLPG-------------------------------------------ARALHGDIQQSQREVTLAGFRSG 408 (574)
Q Consensus 372 t~~~~~~l~~~l~~-------------------------------------------~~~lh~~~~~~~r~~~~~~F~~g 408 (574)
++..|+.++..|.. +.++||+|++.+|..+++.|++|
T Consensus 450 sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G 529 (1108)
T 3l9o_A 450 SKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEG 529 (1108)
T ss_dssp CHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCC
Confidence 99999999998863 67899999999999999999999
Q ss_pred CccEEEEeccccccCCCCCCcEEEEeCCC--------CCHhHHHHHhcccccCC--CcceEEEEECCC--chHHHHHH
Q 008207 409 KFMTLVATNVAARGLDINDVQLIIQCEPP--------RDVEAYIHRSGRTGRAG--NTGVAVMLYDPR--KSSVSKIE 474 (574)
Q Consensus 409 ~~~vLvaTd~~~~Gldi~~v~~VI~~d~p--------~s~~~yiqr~GR~gR~g--~~G~~i~l~~~~--~~~~~~i~ 474 (574)
.++|||||+++++|||+|++++||+++.| .++..|+||+|||||.| ..|.||+++++. ...+..+.
T Consensus 530 ~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~ 607 (1108)
T 3l9o_A 530 FLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMV 607 (1108)
T ss_dssp CCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHH
T ss_pred CCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHh
Confidence 99999999999999999999999987764 46778999999999999 689999999887 33344443
No 19
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.5e-51 Score=446.46 Aligned_cols=321 Identities=19% Similarity=0.267 Sum_probs=252.6
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHH
Q 008207 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (574)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~ 205 (574)
.+|| .|||+|..++|.++.|+ |+.++||+|||++|++|++.....+ ++++||+|||+||.|+++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g-------------~~vlVltptreLA~qd~e 142 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTG-------------KGVHVVTVNEYLASRDAE 142 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTS-------------SCEEEEESSHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcC-------------CCEEEEeCCHHHHHHHHH
Confidence 4799 99999999999999999 9999999999999999998554432 249999999999999999
Q ss_pred HHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHH-HHhHhc------CCccCCCceEEEecCchhhh-cCC
Q 008207 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIER------GNIDLSSLKFRVLDEADEML-RMG 277 (574)
Q Consensus 206 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~------~~~~l~~~~~lVlDEah~~l-~~~ 277 (574)
++..++.+.++++.+++||.+...+ ....++||+|+|||+| .+++.. +.+.++.+.++||||||+|| +.+
T Consensus 143 ~~~~l~~~lgl~v~~i~gg~~~~~r--~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea 220 (844)
T 1tf5_A 143 QMGKIFEFLGLTVGLNLNSMSKDEK--REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEA 220 (844)
T ss_dssp HHHHHHHHTTCCEEECCTTSCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTT
T ss_pred HHHHHHhhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhcc
Confidence 9999999999999999999986543 3344699999999999 555543 34678999999999999998 664
Q ss_pred ---------------cHHHHHHHHHhccC-------ccCceEE-----------------EEeccCchhHHHHH-----H
Q 008207 278 ---------------FVEDVELILGKVED-------ANKVQTL-----------------LFSATLPSWVKHIS-----T 313 (574)
Q Consensus 278 ---------------~~~~~~~il~~l~~-------~~~~q~l-----------------l~SAT~~~~~~~~~-----~ 313 (574)
|+.++..|+..++. ...+|++ +||||++.++..+. .
T Consensus 221 ~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~ 300 (844)
T 1tf5_A 221 RTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAH 300 (844)
T ss_dssp TCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHH
T ss_pred ccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHH
Confidence 78899999999873 1357887 99999986544442 2
Q ss_pred HhcccCCeEEE------EecCc----------------------------cccccccee---------------------
Q 008207 314 KFLKSDKKTID------LVGNE----------------------------KMKASTNVR--------------------- 338 (574)
Q Consensus 314 ~~~~~~~~~i~------~~~~~----------------------------~~~~~~~i~--------------------- 338 (574)
.++..+..++. +.... ...+...+.
T Consensus 301 ~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te 380 (844)
T 1tf5_A 301 VAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTE 380 (844)
T ss_dssp HTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGG
T ss_pred HHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchh
Confidence 33333222221 00000 000000000
Q ss_pred --------------------------EEEEeCCchhhhhhhhHHHHh-hcCCCeEEEEecChHHHHHHHHhCC----CCc
Q 008207 339 --------------------------HIVLPCSSSARSQVIPDIIRC-YSSGGRTIIFTETKESASQLADLLP----GAR 387 (574)
Q Consensus 339 --------------------------~~~~~~~~~~~~~~l~~ll~~-~~~~~~~lVF~~t~~~~~~l~~~l~----~~~ 387 (574)
+.++.+....|...+...+.. ...+.++||||+|++.++.|+..|. .+.
T Consensus 381 ~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~ 460 (844)
T 1tf5_A 381 EEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQ 460 (844)
T ss_dssp HHHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCE
T ss_pred HHHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEE
Confidence 112334556677777776653 3467799999999999999999997 567
Q ss_pred cccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCC--------CCcEEEEeCCCCCHhHHHHHhcccccCCCcceE
Q 008207 388 ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN--------DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 459 (574)
Q Consensus 388 ~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~--------~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~ 459 (574)
++||++.+.+|..+.++|+.| .|+||||+|+||+||+ ++.|||||++|.|...|+||+|||||+|.+|.+
T Consensus 461 vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s 538 (844)
T 1tf5_A 461 VLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGIT 538 (844)
T ss_dssp EECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred EeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeE
Confidence 899999888887666666665 7999999999999999 889999999999999999999999999999999
Q ss_pred EEEECCC
Q 008207 460 VMLYDPR 466 (574)
Q Consensus 460 i~l~~~~ 466 (574)
++|+++.
T Consensus 539 ~~~vs~e 545 (844)
T 1tf5_A 539 QFYLSME 545 (844)
T ss_dssp EEEEETT
T ss_pred EEEecHH
Confidence 9999887
No 20
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=4.1e-50 Score=431.13 Aligned_cols=331 Identities=20% Similarity=0.298 Sum_probs=265.8
Q ss_pred CcccccCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 008207 109 NAVSRFRISVPLREKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (574)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (574)
..|++++|++.+.+.|++ .||..|+|+|.++|+.++.|+|+++.+|||+|||++|++|++.. .
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~--~-------------- 65 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL--N-------------- 65 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS--S--------------
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh--C--------------
Confidence 358899999999999998 79999999999999999999999999999999999999999842 1
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHH----HhcCCCcEEEEChHHHHHhHhcCCccCCCce
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF----KLKKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~----~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~ 263 (574)
.++|||+|+++|+.|+.+.+..+ ++.+..+.|+.+...... .....++|+|+||++|........+...++.
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~ 141 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPV 141 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEE
T ss_pred CCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCC
Confidence 25899999999999999999875 577888888877654332 2245699999999999643322334457899
Q ss_pred EEEecCchhhhcCC--cHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEE
Q 008207 264 FRVLDEADEMLRMG--FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV 341 (574)
Q Consensus 264 ~lVlDEah~~l~~~--~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~ 341 (574)
+|||||||++.++| |...+..+.......+..++++||||++..+.......+......+.... ....++....
T Consensus 142 ~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~----~~r~~l~~~v 217 (523)
T 1oyw_A 142 LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS----FDRPNIRYML 217 (523)
T ss_dssp EEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECC----CCCTTEEEEE
T ss_pred EEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCC----CCCCceEEEE
Confidence 99999999999887 76665544322222235789999999998876544444432333332222 1223444333
Q ss_pred EeCCchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEec
Q 008207 342 LPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (574)
Q Consensus 342 ~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd 417 (574)
.. ...+...+..++... .++++||||+|++.++.++..|. .+..+||+|++.+|..+++.|++|+.+|||||+
T Consensus 218 ~~--~~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~ 294 (523)
T 1oyw_A 218 ME--KFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV 294 (523)
T ss_dssp EE--CSSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT
T ss_pred Ee--CCCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 32 234455566666554 66799999999999999999986 577899999999999999999999999999999
Q ss_pred cccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 418 ~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
++++|||+|+|++|||||+|.|.+.|+||+||+||.|.+|.|++|+++.
T Consensus 295 a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~ 343 (523)
T 1oyw_A 295 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPA 343 (523)
T ss_dssp TSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHH
T ss_pred hhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHH
Confidence 9999999999999999999999999999999999999999999999876
No 21
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.3e-48 Score=422.16 Aligned_cols=322 Identities=20% Similarity=0.240 Sum_probs=227.4
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHH
Q 008207 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (574)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (574)
.|+ .|||+|..++|.++.|+ |+.++||||||++|++|++.....+ ++++||+|||+||.|++++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g-------------~~vlVltPTreLA~Q~~e~ 134 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTG-------------KGVHVVTVNDYLAQRDAEN 134 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTS-------------SCCEEEESSHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcC-------------CcEEEEcCCHHHHHHHHHH
Confidence 565 99999999999999998 9999999999999999999665432 2489999999999999999
Q ss_pred HHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHH-HHhHhcC------CccCCCceEEEecCchhhh-cC--
Q 008207 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG------NIDLSSLKFRVLDEADEML-RM-- 276 (574)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~~------~~~l~~~~~lVlDEah~~l-~~-- 276 (574)
+..++.+.++++.+++||.+.. .+.+..++||+|||||+| .|++..+ .+.++++.++||||||+|| +.
T Consensus 135 ~~~l~~~lgl~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~ 212 (853)
T 2fsf_A 135 NRPLFEFLGLTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEAR 212 (853)
T ss_dssp HHHHHHHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTT
T ss_pred HHHHHHhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCc
Confidence 9999999999999999999864 344445699999999999 7887654 3667999999999999999 54
Q ss_pred -------------CcHHHHHHHHHhccCc------------------cCceEE------------------------EEe
Q 008207 277 -------------GFVEDVELILGKVEDA------------------NKVQTL------------------------LFS 301 (574)
Q Consensus 277 -------------~~~~~~~~il~~l~~~------------------~~~q~l------------------------l~S 301 (574)
+|+.++..|+..++.. ..+|++ +||
T Consensus 213 tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfs 292 (853)
T 2fsf_A 213 TPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS 292 (853)
T ss_dssp CEEEEEEC------------------------------------------------------------------------
T ss_pred ccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccC
Confidence 4678888898888641 134553 899
Q ss_pred ccCchhHHHHH-----HHhcccCC-------e-----------------------------EEEEecCccccccccee--
Q 008207 302 ATLPSWVKHIS-----TKFLKSDK-------K-----------------------------TIDLVGNEKMKASTNVR-- 338 (574)
Q Consensus 302 AT~~~~~~~~~-----~~~~~~~~-------~-----------------------------~i~~~~~~~~~~~~~i~-- 338 (574)
||++..+..+. ..++..+. . .+.+... ..+...+.
T Consensus 293 at~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e--~~tla~It~q 370 (853)
T 2fsf_A 293 PANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNE--NQTLASITFQ 370 (853)
T ss_dssp ----------------------------------------------------------------CCCC--CEEEEEEEHH
T ss_pred cccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceeccc--ccccceeehH
Confidence 99875433321 11111111 0 0111000 01111111
Q ss_pred ---------------------------------------------EEEEeCCchhhhhhhhHHHH-hhcCCCeEEEEecC
Q 008207 339 ---------------------------------------------HIVLPCSSSARSQVIPDIIR-CYSSGGRTIIFTET 372 (574)
Q Consensus 339 ---------------------------------------------~~~~~~~~~~~~~~l~~ll~-~~~~~~~~lVF~~t 372 (574)
+.++.+....|...+...+. ....+.++||||+|
T Consensus 371 nyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~s 450 (853)
T 2fsf_A 371 NYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTIS 450 (853)
T ss_dssp HHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred HHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 11234556677878877775 34567899999999
Q ss_pred hHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCC--------------------
Q 008207 373 KESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV-------------------- 428 (574)
Q Consensus 373 ~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v-------------------- 428 (574)
++.++.|+..|. .+.++||++.+.++..+.++|+.| .|+||||+|+||+||+..
T Consensus 451 ie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~ 528 (853)
T 2fsf_A 451 IEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEK 528 (853)
T ss_dssp HHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHH
Confidence 999999999997 577899999888888888899888 799999999999999974
Q ss_pred -----------------cEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCCchHH
Q 008207 429 -----------------QLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 470 (574)
Q Consensus 429 -----------------~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~~~~~ 470 (574)
.|||+|++|.|...|+||+|||||+|.+|.+++|++..+..+
T Consensus 529 ~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~l~ 587 (853)
T 2fsf_A 529 IKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALM 587 (853)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSGGG
T ss_pred HHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHHHH
Confidence 699999999999999999999999999999999999874433
No 22
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.7e-47 Score=416.89 Aligned_cols=330 Identities=20% Similarity=0.240 Sum_probs=203.4
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHH
Q 008207 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (574)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (574)
++..+|+|+|.++++.++.|+|+++++|||||||++|++|+++.+..... ..++++|||+||++|+.|++++
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--------~~~~~~lil~P~~~L~~q~~~~ 74 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--------GRKAKVVFLATKVPVYEQQKNV 74 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--------SCCCCEEEECSSHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc--------cCCCeEEEEeCCHHHHHHHHHH
Confidence 35668999999999999999999999999999999999999999876532 2355799999999999999999
Q ss_pred HHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCc-cCCCceEEEecCchhhhcCCcHHHHH-H
Q 008207 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI-DLSSLKFRVLDEADEMLRMGFVEDVE-L 284 (574)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~-~l~~~~~lVlDEah~~l~~~~~~~~~-~ 284 (574)
+..++...++++..++|+.+...+...+..+++|+|+||++|.+++.++.+ .+.++++||+||||++.+.++...+. .
T Consensus 75 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~ 154 (556)
T 4a2p_A 75 FKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTR 154 (556)
T ss_dssp HHHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHH
T ss_pred HHHHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHH
Confidence 999988889999999999977766666666799999999999999998877 79999999999999998887544442 2
Q ss_pred HHHh-ccC-ccCceEEEEeccCch--------hHHHHHHHhcccCCeEEEEecCcc-----cccccceeEEEEe------
Q 008207 285 ILGK-VED-ANKVQTLLFSATLPS--------WVKHISTKFLKSDKKTIDLVGNEK-----MKASTNVRHIVLP------ 343 (574)
Q Consensus 285 il~~-l~~-~~~~q~ll~SAT~~~--------~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~i~~~~~~------ 343 (574)
.+.. +.. .+..|+++||||++. +...+....-.-+...+....... ...........+.
T Consensus 155 ~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (556)
T 4a2p_A 155 YLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNP 234 (556)
T ss_dssp HHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCH
T ss_pred HHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCCh
Confidence 2221 111 235799999999853 111111110000111111110000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 008207 344 -------------------------------------------------------------------------------- 343 (574)
Q Consensus 344 -------------------------------------------------------------------------------- 343 (574)
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 314 (556)
T 4a2p_A 235 FAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDA 314 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred -----------------------------------------------------CCchhhhhhhhHHHHhh---cCCCeEE
Q 008207 344 -----------------------------------------------------CSSSARSQVIPDIIRCY---SSGGRTI 367 (574)
Q Consensus 344 -----------------------------------------------------~~~~~~~~~l~~ll~~~---~~~~~~l 367 (574)
.....+...|..++... ..+.++|
T Consensus 315 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~l 394 (556)
T 4a2p_A 315 LIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTL 394 (556)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEE
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEE
Confidence 00123444455555432 4678999
Q ss_pred EEecChHHHHHHHHhCCC----------------CccccccCCHHHHHHHHHHHhC-CCccEEEEeccccccCCCCCCcE
Q 008207 368 IFTETKESASQLADLLPG----------------ARALHGDIQQSQREVTLAGFRS-GKFMTLVATNVAARGLDINDVQL 430 (574)
Q Consensus 368 VF~~t~~~~~~l~~~l~~----------------~~~lh~~~~~~~r~~~~~~F~~-g~~~vLvaTd~~~~Gldi~~v~~ 430 (574)
|||+++..++.++..|.. ...+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++
T Consensus 395 VF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~ 474 (556)
T 4a2p_A 395 LFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNL 474 (556)
T ss_dssp EEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CE
T ss_pred EEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCE
Confidence 999999999999999852 2356888999999999999999 99999999999999999999999
Q ss_pred EEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 431 IIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 431 VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
||+||+|+|+..|+||+|| ||. +.|.+++|+++.
T Consensus 475 VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~ 508 (556)
T 4a2p_A 475 VVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKT 508 (556)
T ss_dssp EEEETCCSCHHHHHHC----------CCEEEEESCH
T ss_pred EEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCc
Confidence 9999999999999999999 999 799999999976
No 23
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=5.6e-47 Score=435.44 Aligned_cols=339 Identities=18% Similarity=0.287 Sum_probs=271.0
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHH
Q 008207 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (574)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~ 205 (574)
..|| .|||+|.++++.++.|+|++++||||||||++|++|++..+.. ++++|||+|||+||.|+++
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~-------------~~~~Lil~PtreLa~Q~~~ 139 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK-------------GKKSALVFPTVTLVKQTLE 139 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT-------------TCCEEEEESSHHHHHHHHH
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc-------------CCeEEEEechHHHHHHHHH
Confidence 4688 6999999999999999999999999999999998888887733 3469999999999999999
Q ss_pred HHHHhhCCCCceEEEEeCCcch---HHHHHHhcCC-CcEEEEChHHHHHhHhcCCccCCCceEEEecCchh---------
Q 008207 206 DFDVYGGAVGLTSCCLYGGAPY---HAQEFKLKKG-IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADE--------- 272 (574)
Q Consensus 206 ~~~~~~~~~~~~~~~~~gg~~~---~~~~~~l~~~-~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~--------- 272 (574)
.+..++ ..++++..++||.+. ..+...+..+ ++|+|+||++|++++.. +.+.++++|||||||+
T Consensus 140 ~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~D 216 (1104)
T 4ddu_A 140 RLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNID 216 (1104)
T ss_dssp HHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHH
T ss_pred HHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccch
Confidence 999987 778999999999988 6666667665 99999999999998875 6788999999999964
Q ss_pred -hhc-CCcHHH-HHHHHHhcc---------CccCceEEEEecc-CchhHH-HHHHHhcccCCeEEEEecCccccccccee
Q 008207 273 -MLR-MGFVED-VELILGKVE---------DANKVQTLLFSAT-LPSWVK-HISTKFLKSDKKTIDLVGNEKMKASTNVR 338 (574)
Q Consensus 273 -~l~-~~~~~~-~~~il~~l~---------~~~~~q~ll~SAT-~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 338 (574)
|++ +||..+ +..++..++ .....|+++|||| .|..+. .+...++. +.+. .......++.
T Consensus 217 r~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~-----i~v~--~~~~~~~~i~ 289 (1104)
T 4ddu_A 217 TLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-----FTVG--RLVSVARNIT 289 (1104)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC-----CCCC--BCCCCCCCEE
T ss_pred hhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee-----EEec--cCCCCcCCce
Confidence 556 899888 889998876 1126899999999 565544 23333432 1111 2234556778
Q ss_pred EEEEeCCchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCc-cccccCCHHHHHHHHHHHhCCCccEE
Q 008207 339 HIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GAR-ALHGDIQQSQREVTLAGFRSGKFMTL 413 (574)
Q Consensus 339 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~-~lh~~~~~~~r~~~~~~F~~g~~~vL 413 (574)
+.++.+ .+...+..++... ++++||||+++..++.++..|. .+. .+||. |.+ ++.|++|+++||
T Consensus 290 ~~~~~~---~k~~~L~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VL 358 (1104)
T 4ddu_A 290 HVRISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINIL 358 (1104)
T ss_dssp EEEESC---CCHHHHHHHHHHH--CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEE
T ss_pred eEEEec---CHHHHHHHHHHhc--CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEE
Confidence 888776 3455667777664 4899999999999999999986 566 88882 555 999999999999
Q ss_pred EE----eccccccCCCCC-CcEEEEeCCCC--------------------------------------------------
Q 008207 414 VA----TNVAARGLDIND-VQLIIQCEPPR-------------------------------------------------- 438 (574)
Q Consensus 414 va----Td~~~~Gldi~~-v~~VI~~d~p~-------------------------------------------------- 438 (574)
|| |++++||||+|+ |++|||||+|.
T Consensus 359 Vatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~ 438 (1104)
T 4ddu_A 359 IGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFV 438 (1104)
T ss_dssp EEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHH
T ss_pred EEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 99 999999999999 99999999998
Q ss_pred ----------------------CHhHHHHHhcccccCCC----cceEEEEECCCchHHHHHHHHh----CCcceecCCCC
Q 008207 439 ----------------------DVEAYIHRSGRTGRAGN----TGVAVMLYDPRKSSVSKIERES----GVKFEHISAPQ 488 (574)
Q Consensus 439 ----------------------s~~~yiqr~GR~gR~g~----~G~~i~l~~~~~~~~~~i~~~~----~~~~~~~~~~~ 488 (574)
++.+|+||+|||||.|. .|.++++++. ...+..+++.+ .+++..+....
T Consensus 439 ~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d-~~~~~~l~~~~~~~~~~~~~~~~~~~ 517 (1104)
T 4ddu_A 439 EKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEED-EEIFESLKTRLLLIAEEEIIEEAEAN 517 (1104)
T ss_dssp HHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCC-HHHHHHHHHHHHHHTCCCEEEGGGCC
T ss_pred HHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEec-HHHHHHHHHHHhhhcccccccccccC
Confidence 78899999999999654 5677888743 44555565554 46666777667
Q ss_pred HHHHHHHHHHHH
Q 008207 489 PADIAKAAGVEA 500 (574)
Q Consensus 489 ~~~i~~~~~~~~ 500 (574)
.+++.+...+..
T Consensus 518 ~~~~~~~i~~~r 529 (1104)
T 4ddu_A 518 WKELVHEVEESR 529 (1104)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhHHH
Confidence 777776544333
No 24
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=4e-47 Score=413.77 Aligned_cols=327 Identities=20% Similarity=0.236 Sum_probs=227.4
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHH
Q 008207 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (574)
.+|+|+|.++++.++.|+|+++++|||||||++|++|+++.+..... ..++++|||+||++|+.|+++++..
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--------~~~~~~lil~P~~~L~~q~~~~~~~ 74 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC--------GQKGKVVFFANQIPVYEQQATVFSR 74 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--------SCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc--------CCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999887532 2345799999999999999999999
Q ss_pred hhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCc-cCCCceEEEecCchhhhcCCcHHHH-HHHHH
Q 008207 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI-DLSSLKFRVLDEADEMLRMGFVEDV-ELILG 287 (574)
Q Consensus 210 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~-~l~~~~~lVlDEah~~l~~~~~~~~-~~il~ 287 (574)
++...++++..++|+.....+...+..+++|+|+||++|.+++.++.+ .+.++++||+||||++.+.+....+ ...+.
T Consensus 75 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~ 154 (555)
T 3tbk_A 75 YFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLD 154 (555)
T ss_dssp HHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHH
T ss_pred HhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHH
Confidence 988889999999999987766666666799999999999999988877 7889999999999999877643332 22222
Q ss_pred hc-cC--ccCceEEEEeccCchh--------HHHHHHHhcccCCeEEEEecCc-----ccccccceeEEEEeC-------
Q 008207 288 KV-ED--ANKVQTLLFSATLPSW--------VKHISTKFLKSDKKTIDLVGNE-----KMKASTNVRHIVLPC------- 344 (574)
Q Consensus 288 ~l-~~--~~~~q~ll~SAT~~~~--------~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~i~~~~~~~------- 344 (574)
.. .. .+.+|+++||||++.. ...+....-.-+...+...... ............+..
T Consensus 155 ~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
T 3tbk_A 155 HKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFK 234 (555)
T ss_dssp HHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHH
T ss_pred hhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHH
Confidence 21 11 1357999999998542 1111111110111111111100 000000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 008207 345 -------------------------------------------------------------------------------- 344 (574)
Q Consensus 345 -------------------------------------------------------------------------------- 344 (574)
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 314 (555)
T 3tbk_A 235 CIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDAL 314 (555)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred -----------------------------------------------------CchhhhhhhhHHHHhh---cCCCeEEE
Q 008207 345 -----------------------------------------------------SSSARSQVIPDIIRCY---SSGGRTII 368 (574)
Q Consensus 345 -----------------------------------------------------~~~~~~~~l~~ll~~~---~~~~~~lV 368 (574)
....+...+..++... ..++++||
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lV 394 (555)
T 3tbk_A 315 IISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTIL 394 (555)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEE
Confidence 0122344444455432 35689999
Q ss_pred EecChHHHHHHHHhCC----------------CCccccccCCHHHHHHHHHHHhC-CCccEEEEeccccccCCCCCCcEE
Q 008207 369 FTETKESASQLADLLP----------------GARALHGDIQQSQREVTLAGFRS-GKFMTLVATNVAARGLDINDVQLI 431 (574)
Q Consensus 369 F~~t~~~~~~l~~~l~----------------~~~~lh~~~~~~~r~~~~~~F~~-g~~~vLvaTd~~~~Gldi~~v~~V 431 (574)
||+++..++.++..|. ....+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++|
T Consensus 395 F~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~V 474 (555)
T 3tbk_A 395 FVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLV 474 (555)
T ss_dssp ECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEE
T ss_pred EeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEE
Confidence 9999999999999884 23456789999999999999999 999999999999999999999999
Q ss_pred EEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 432 IQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 432 I~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
|+||+|+|+..|+||+|| ||. +.|.+++|+++.
T Consensus 475 I~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~ 507 (555)
T 3tbk_A 475 ILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSA 507 (555)
T ss_dssp EEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCH
T ss_pred EEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCC
Confidence 999999999999999999 999 899999999987
No 25
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.9e-46 Score=419.96 Aligned_cols=348 Identities=21% Similarity=0.286 Sum_probs=267.5
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCC
Q 008207 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (574)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (574)
+..|++++|++++.+.+.+.||..|+|+|.++++. +..+++++++||||||||++|.+|+++.+...
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------------ 74 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN------------ 74 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS------------
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC------------
Confidence 35699999999999999999999999999999999 78999999999999999999999999887632
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEE
Q 008207 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (574)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lV 266 (574)
+.+++|++|+|+||.|+++.++.+. ..++++..++|+...... .+ ..++|+|+|||+|..++.++...++++++||
T Consensus 75 ~~~il~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vI 150 (715)
T 2va8_A 75 GGKAIYVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFV 150 (715)
T ss_dssp CSEEEEECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEE
Confidence 2369999999999999999996554 347899999998765432 22 3699999999999999988777789999999
Q ss_pred ecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEE------
Q 008207 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI------ 340 (574)
Q Consensus 267 lDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~------ 340 (574)
+||||++.+.++...+..++..++ +.|+++||||+++ ...+.. |+. ...+...... ..+...
T Consensus 151 iDE~H~l~~~~~~~~l~~i~~~~~---~~~ii~lSATl~n-~~~~~~-~l~--~~~~~~~~r~-----~~l~~~~~~~~~ 218 (715)
T 2va8_A 151 LDELHYLNDPERGPVVESVTIRAK---RRNLLALSATISN-YKQIAK-WLG--AEPVATNWRP-----VPLIEGVIYPER 218 (715)
T ss_dssp ECSGGGGGCTTTHHHHHHHHHHHH---TSEEEEEESCCTT-HHHHHH-HHT--CEEEECCCCS-----SCEEEEEEEECS
T ss_pred EechhhcCCcccchHHHHHHHhcc---cCcEEEEcCCCCC-HHHHHH-HhC--CCccCCCCCC-----CCceEEEEecCC
Confidence 999999988888999999988886 5799999999986 244444 442 1122111110 011110
Q ss_pred ------EEeCCch-h----hhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC-------------------------
Q 008207 341 ------VLPCSSS-A----RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------------------------- 384 (574)
Q Consensus 341 ------~~~~~~~-~----~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~------------------------- 384 (574)
....... . ....+..+......++++||||++++.++.++..|.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~ 298 (715)
T 2va8_A 219 KKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEE 298 (715)
T ss_dssp STTEEEEEETTSCEEEEESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCS
T ss_pred cccceeeecCcchhhhcccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhh
Confidence 0011100 0 012223333334577999999999999998887654
Q ss_pred ---------------CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEE----eC-------CCC
Q 008207 385 ---------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----CE-------PPR 438 (574)
Q Consensus 385 ---------------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~----~d-------~p~ 438 (574)
.+.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.
T Consensus 299 ~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~ 378 (715)
T 2va8_A 299 GGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEI 378 (715)
T ss_dssp SCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------
T ss_pred ccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcC
Confidence 2678999999999999999999999999999999999999999999999 99 899
Q ss_pred CHhHHHHHhcccccCCC--cceEEEEECCCchHHHHHHHHhCCccee
Q 008207 439 DVEAYIHRSGRTGRAGN--TGVAVMLYDPRKSSVSKIERESGVKFEH 483 (574)
Q Consensus 439 s~~~yiqr~GR~gR~g~--~G~~i~l~~~~~~~~~~i~~~~~~~~~~ 483 (574)
+..+|+||+|||||.|. .|.||+++++.......+++.+....+.
T Consensus 379 s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~ 425 (715)
T 2va8_A 379 PIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEP 425 (715)
T ss_dssp CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCC
T ss_pred CHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCC
Confidence 99999999999999984 8999999987643323344444333333
No 26
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=6.1e-47 Score=423.74 Aligned_cols=349 Identities=20% Similarity=0.282 Sum_probs=274.1
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 008207 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (574)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (574)
.|+++++++.+.+.+.+.||..|+|+|.++++. +..+++++++||||||||++|.+|+++.+... +.
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------------~~ 69 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ------------GG 69 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH------------CS
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC------------CC
Confidence 488999999999999999999999999999998 88999999999999999999999999887632 23
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEec
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlD 268 (574)
+++|++|+|+||.|+++.++.+.. .++++..++|+...... ....++|+|+||++|..++.++...++++++||+|
T Consensus 70 ~~l~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiD 145 (720)
T 2zj8_A 70 KAVYIVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVAD 145 (720)
T ss_dssp EEEEECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEE
T ss_pred EEEEEcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEE
Confidence 699999999999999999976554 47899999998765432 12368999999999999988877678999999999
Q ss_pred CchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEE------
Q 008207 269 EADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL------ 342 (574)
Q Consensus 269 Eah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~------ 342 (574)
|||++.+.++...+..++..++. .+|+++||||+++ ...+.. |+. ...+..... +..+...+.
T Consensus 146 E~H~l~~~~r~~~~~~ll~~l~~--~~~ii~lSATl~n-~~~~~~-~l~--~~~~~~~~r-----p~~l~~~~~~~~~~~ 214 (720)
T 2zj8_A 146 EIHLIGSRDRGATLEVILAHMLG--KAQIIGLSATIGN-PEELAE-WLN--AELIVSDWR-----PVKLRRGVFYQGFVT 214 (720)
T ss_dssp TGGGGGCTTTHHHHHHHHHHHBT--TBEEEEEECCCSC-HHHHHH-HTT--EEEEECCCC-----SSEEEEEEEETTEEE
T ss_pred CCcccCCCcccHHHHHHHHHhhc--CCeEEEEcCCcCC-HHHHHH-HhC--CcccCCCCC-----CCcceEEEEeCCeee
Confidence 99999988899999999998875 6899999999986 334443 442 111111110 111111111
Q ss_pred eCCc--hhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC------------------------------------
Q 008207 343 PCSS--SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------------------------------------ 384 (574)
Q Consensus 343 ~~~~--~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~------------------------------------ 384 (574)
.... ......+..+......++++||||++++.++.++..|.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 294 (720)
T 2zj8_A 215 WEDGSIDRFSSWEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIR 294 (720)
T ss_dssp ETTSCEEECSSTTHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHT
T ss_pred ccccchhhhhHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 1110 00112222333333467899999999999998887764
Q ss_pred -CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEE----eC----CCCCHhHHHHHhcccccCC-
Q 008207 385 -GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----CE----PPRDVEAYIHRSGRTGRAG- 454 (574)
Q Consensus 385 -~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~----~d----~p~s~~~yiqr~GR~gR~g- 454 (574)
++.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.|
T Consensus 295 ~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~ 374 (720)
T 2zj8_A 295 GGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKY 374 (720)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTT
T ss_pred cCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCC
Confidence 2678999999999999999999999999999999999999999999999 77 6999999999999999998
Q ss_pred -CcceEEEEECCCchHHHHHHHHhCCcceecCC
Q 008207 455 -NTGVAVMLYDPRKSSVSKIERESGVKFEHISA 486 (574)
Q Consensus 455 -~~G~~i~l~~~~~~~~~~i~~~~~~~~~~~~~ 486 (574)
..|.||+++++.. ....+++.+....+.+..
T Consensus 375 ~~~G~~~~l~~~~~-~~~~~~~~~~~~~~~i~s 406 (720)
T 2zj8_A 375 DEVGEGIIVSTSDD-PREVMNHYIFGKPEKLFS 406 (720)
T ss_dssp CSEEEEEEECSSSC-HHHHHHHHTTSCCCCCCC
T ss_pred CCCceEEEEecCcc-HHHHHHHHhcCCCCCcEe
Confidence 4899999998774 222344555545555443
No 27
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.2e-47 Score=429.24 Aligned_cols=336 Identities=18% Similarity=0.199 Sum_probs=216.3
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHH
Q 008207 121 REKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (574)
Q Consensus 121 ~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa 200 (574)
..+|..+||..|+|+|.++++.++.|+|+|+++|||+|||++|++|+++.+..... ..+.++|||+||++|+
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~--------~~~~~~lvl~Pt~~L~ 74 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ--------GQKGKVVFFANQIPVY 74 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT--------TCCCCEEEECSSHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc--------CCCCeEEEEECCHHHH
Confidence 35677889999999999999999999999999999999999999999998865431 2235699999999999
Q ss_pred HHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCc-cCCCceEEEecCchhhhcCCcH
Q 008207 201 KQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI-DLSSLKFRVLDEADEMLRMGFV 279 (574)
Q Consensus 201 ~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~-~l~~~~~lVlDEah~~l~~~~~ 279 (574)
.|+.+++..++...++++..++|+.....+...+..+++|+|+||++|.+++.++.+ .+.++++|||||||++.+...+
T Consensus 75 ~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~ 154 (696)
T 2ykg_A 75 EQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPY 154 (696)
T ss_dssp HHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHH
T ss_pred HHHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccH
Confidence 999999999988889999999999877666666666799999999999999998877 7899999999999998755422
Q ss_pred HHH-HHHHHh-c--cCccCceEEEEeccCc--------hhHHHHHHHhcccC--------------------CeEEEEe-
Q 008207 280 EDV-ELILGK-V--EDANKVQTLLFSATLP--------SWVKHISTKFLKSD--------------------KKTIDLV- 326 (574)
Q Consensus 280 ~~~-~~il~~-l--~~~~~~q~ll~SAT~~--------~~~~~~~~~~~~~~--------------------~~~i~~~- 326 (574)
..+ ...+.. + ...+.+++++||||+. ..+..+....-..+ +......
T Consensus 155 ~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~ 234 (696)
T 2ykg_A 155 NMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKV 234 (696)
T ss_dssp HHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEEC
T ss_pred HHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEec
Confidence 222 112221 1 0113579999999986 12222222110000 1000000
Q ss_pred cCcccc--------------------------------------------------------------------------
Q 008207 327 GNEKMK-------------------------------------------------------------------------- 332 (574)
Q Consensus 327 ~~~~~~-------------------------------------------------------------------------- 332 (574)
......
T Consensus 235 ~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 314 (696)
T 2ykg_A 235 ESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTS 314 (696)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHH
T ss_pred CcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHH
Confidence 000000
Q ss_pred ----------------------------------cccceeEEEEe---------------C-CchhhhhhhhHHHHhh--
Q 008207 333 ----------------------------------ASTNVRHIVLP---------------C-SSSARSQVIPDIIRCY-- 360 (574)
Q Consensus 333 ----------------------------------~~~~i~~~~~~---------------~-~~~~~~~~l~~ll~~~-- 360 (574)
....+.+.+.. . ....+...+..++...
T Consensus 315 ~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~ 394 (696)
T 2ykg_A 315 HLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYH 394 (696)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhc
Confidence 00000000000 0 1234555666666544
Q ss_pred -cCCCeEEEEecChHHHHHHHHhCC--------CCccc--------cccCCHHHHHHHHHHHhC-CCccEEEEecccccc
Q 008207 361 -SSGGRTIIFTETKESASQLADLLP--------GARAL--------HGDIQQSQREVTLAGFRS-GKFMTLVATNVAARG 422 (574)
Q Consensus 361 -~~~~~~lVF~~t~~~~~~l~~~l~--------~~~~l--------h~~~~~~~r~~~~~~F~~-g~~~vLvaTd~~~~G 422 (574)
..++++||||+++..++.++..|. .+..+ ||+|++.+|..+++.|++ |+++|||||+++++|
T Consensus 395 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~G 474 (696)
T 2ykg_A 395 LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 474 (696)
T ss_dssp TCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC
T ss_pred cCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcC
Confidence 356899999999999999999885 33445 669999999999999998 999999999999999
Q ss_pred CCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 423 ldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
||+|+|++||+||+|+++..|+||+|| ||. +.|.|++|++..
T Consensus 475 iDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~ 516 (696)
T 2ykg_A 475 IDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNA 516 (696)
T ss_dssp ---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCH
T ss_pred CcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCC
Confidence 999999999999999999999999999 998 789999999876
No 28
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=5.8e-47 Score=422.75 Aligned_cols=332 Identities=25% Similarity=0.339 Sum_probs=261.6
Q ss_pred cccccC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 008207 110 AVSRFR--ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (574)
Q Consensus 110 ~~~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (574)
+|++++ |++.+.+.+.+.||..|+|+|.++++.++.+++++++||||||||++|.+|+++.+..+
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------------- 68 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG------------- 68 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTT-------------
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------------
Confidence 477888 99999999999999999999999999999999999999999999999999999887643
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEe
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVl 267 (574)
.+++|++|+|+||.|+++.++.+. ..++++..++|+...... ....++|+|+|||+|..++.++...++++++||+
T Consensus 69 ~~~l~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIi 144 (702)
T 2p6r_A 69 GKSLYVVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVV 144 (702)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEE
T ss_pred CcEEEEeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEE
Confidence 249999999999999999996554 358899999998765332 2246999999999999999887767899999999
Q ss_pred cCchhhhcCCcHHHHHHHHHhccC-ccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEE-----
Q 008207 268 DEADEMLRMGFVEDVELILGKVED-ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV----- 341 (574)
Q Consensus 268 DEah~~l~~~~~~~~~~il~~l~~-~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~----- 341 (574)
||||++.+.++...+..++..+.. .+..|+++||||+++ ...+.. ++. ...+..... +..+...+
T Consensus 145 DE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~--~~~~~~~~r-----~~~l~~~~~~~~~ 215 (702)
T 2p6r_A 145 DEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLD--ADYYVSDWR-----PVPLVEGVLCEGT 215 (702)
T ss_dssp TTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTT--CEEEECCCC-----SSCEEEEEECSSE
T ss_pred eeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhC--CCcccCCCC-----CccceEEEeeCCe
Confidence 999999988888888888776631 126899999999986 344444 442 222221111 11111111
Q ss_pred --EeCCch---hhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC--------------------------------
Q 008207 342 --LPCSSS---ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP-------------------------------- 384 (574)
Q Consensus 342 --~~~~~~---~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~-------------------------------- 384 (574)
+..... ........+......++++||||++++.++.++..|.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 295 (702)
T 2p6r_A 216 LELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECV 295 (702)
T ss_dssp EEEEETTEEEEEECCHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHH
T ss_pred eeccCcchhhhhhhhHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHH
Confidence 110000 1111222333334467899999999999998887653
Q ss_pred --CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEE----eC---CCCCHhHHHHHhcccccCC-
Q 008207 385 --GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----CE---PPRDVEAYIHRSGRTGRAG- 454 (574)
Q Consensus 385 --~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~----~d---~p~s~~~yiqr~GR~gR~g- 454 (574)
.+.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.|
T Consensus 296 ~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~ 375 (702)
T 2p6r_A 296 RKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGM 375 (702)
T ss_dssp HTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTT
T ss_pred hcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCC
Confidence 4778999999999999999999999999999999999999999999999 77 7999999999999999998
Q ss_pred -CcceEEEEECCCc
Q 008207 455 -NTGVAVMLYDPRK 467 (574)
Q Consensus 455 -~~G~~i~l~~~~~ 467 (574)
..|.|++++++..
T Consensus 376 ~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 376 DERGEAIIIVGKRD 389 (702)
T ss_dssp CSCEEEEEECCGGG
T ss_pred CCCceEEEEecCcc
Confidence 4899999998764
No 29
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.1e-46 Score=433.29 Aligned_cols=336 Identities=21% Similarity=0.299 Sum_probs=264.5
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHH
Q 008207 125 KSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (574)
Q Consensus 125 ~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (574)
..+||. | |+|.++|+.++.|+|++++||||||||+ |++|++..+... ++++|||+|||+||.|++
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~------------~~~~lil~PtreLa~Q~~ 116 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK------------GKRCYVIFPTSLLVIQAA 116 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT------------SCCEEEEESCHHHHHHHH
T ss_pred HhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc------------CCeEEEEeccHHHHHHHH
Confidence 347999 9 9999999999999999999999999998 999999887642 346999999999999999
Q ss_pred HHHHHhhCCCCc----eEEEEeCCcchHHH---HHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCC
Q 008207 205 EDFDVYGGAVGL----TSCCLYGGAPYHAQ---EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277 (574)
Q Consensus 205 ~~~~~~~~~~~~----~~~~~~gg~~~~~~---~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~ 277 (574)
+.++.++...++ .+.+++||.+...+ ...+.. ++|+|+|||+|++++.+ ++++++|||||||+|++
T Consensus 117 ~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~-- 189 (1054)
T 1gku_B 117 ETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK-- 189 (1054)
T ss_dssp HHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--
T ss_pred HHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--
Confidence 999999988888 89999999988764 344555 99999999999998875 67999999999999998
Q ss_pred cHHHHHHHHHhccC---------ccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchh
Q 008207 278 FVEDVELILGKVED---------ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348 (574)
Q Consensus 278 ~~~~~~~il~~l~~---------~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~ 348 (574)
|..++..++..+.- ....|+++||||++.. ..+...++. .+..+.+. .......++.+.++ ...
T Consensus 190 ~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~-~~~~i~v~--~~~~~~~~i~~~~~---~~~ 262 (1054)
T 1gku_B 190 ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFR-QLLNFDIG--SSRITVRNVEDVAV---NDE 262 (1054)
T ss_dssp STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHH-HHHCCCCS--CCEECCCCEEEEEE---SCC
T ss_pred ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhh-cceEEEcc--CcccCcCCceEEEe---chh
Confidence 45777777776631 2357899999999987 433333331 11112221 11233456666666 355
Q ss_pred hhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC---CCccccccCCHHHHHHHHHHHhCCCccEEEE----eccccc
Q 008207 349 RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTLVA----TNVAAR 421 (574)
Q Consensus 349 ~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~---~~~~lh~~~~~~~r~~~~~~F~~g~~~vLva----Td~~~~ 421 (574)
+...+..++... ++++||||+++..++.++..|. .+..+||++. .+++.|++|+++|||| |+++++
T Consensus 263 k~~~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~r 335 (1054)
T 1gku_B 263 SISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNKFRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVR 335 (1054)
T ss_dssp CTTTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------C
T ss_pred HHHHHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEe
Confidence 667777777654 5789999999999999999997 4678999983 7889999999999999 999999
Q ss_pred cCCCCCC-cEEEEeCCC---------------------------------------------------------------
Q 008207 422 GLDINDV-QLIIQCEPP--------------------------------------------------------------- 437 (574)
Q Consensus 422 Gldi~~v-~~VI~~d~p--------------------------------------------------------------- 437 (574)
|||+|+| ++||+||+|
T Consensus 336 GIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 415 (1054)
T 1gku_B 336 GLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVV 415 (1054)
T ss_dssp CSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSE
T ss_pred ccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccee
Confidence 9999996 999999999
Q ss_pred --------CCHhHHHHHhcccccCCCcce--EEEEECCC-chHHHHHHHHhC---CcceecCCCCHHHHHHHH
Q 008207 438 --------RDVEAYIHRSGRTGRAGNTGV--AVMLYDPR-KSSVSKIERESG---VKFEHISAPQPADIAKAA 496 (574)
Q Consensus 438 --------~s~~~yiqr~GR~gR~g~~G~--~i~l~~~~-~~~~~~i~~~~~---~~~~~~~~~~~~~i~~~~ 496 (574)
.+..+|+||+|||||.|..|. +++++... ...+..+++.++ ..+..+..++.+++.+..
T Consensus 416 ~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~i 488 (1054)
T 1gku_B 416 VREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKLYDIEFKSIDEVDFEKLSREL 488 (1054)
T ss_dssp EETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHTTSSCCCBCSCCCHHHHHHHH
T ss_pred EeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhhccCccccCCcCCHHHHHHhh
Confidence 789999999999999877653 66666555 566677777765 567777777887777643
No 30
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=6e-47 Score=409.28 Aligned_cols=324 Identities=20% Similarity=0.240 Sum_probs=254.1
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHH
Q 008207 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (574)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~ 205 (574)
..|+ .|||+|..++|.++.|+ |+.++||+|||++|++|++.....+. +++||+||++||.|+++
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~-------------~v~VvTpTreLA~Qdae 170 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGN-------------GVHIVTVNDYLAKRDSE 170 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTS-------------CEEEEESSHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCC-------------CeEEEeCCHHHHHHHHH
Confidence 4698 99999999999999998 99999999999999999976554332 49999999999999999
Q ss_pred HHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHH-HHhHhcC------CccCCCceEEEecCchhhh-c--
Q 008207 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG------NIDLSSLKFRVLDEADEML-R-- 275 (574)
Q Consensus 206 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~~------~~~l~~~~~lVlDEah~~l-~-- 275 (574)
++..++.++++++.+++||.+... +....++||+|+|||+| .|+|..+ .+.++.+.++||||||+|| +
T Consensus 171 ~m~~l~~~lGLsv~~i~gg~~~~~--r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDea 248 (922)
T 1nkt_A 171 WMGRVHRFLGLQVGVILATMTPDE--RRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEA 248 (922)
T ss_dssp HHHHHHHHTTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGG
T ss_pred HHHHHHhhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcC
Confidence 999999999999999999998643 33444699999999999 7777653 4678899999999999999 4
Q ss_pred -------------CCcHHHHHHHHHhccC-------ccCceEE-----------------EEeccCchhHHHHH-----H
Q 008207 276 -------------MGFVEDVELILGKVED-------ANKVQTL-----------------LFSATLPSWVKHIS-----T 313 (574)
Q Consensus 276 -------------~~~~~~~~~il~~l~~-------~~~~q~l-----------------l~SAT~~~~~~~~~-----~ 313 (574)
++|+..+..|+..++. ...+|++ +||||++..+..+. .
T Consensus 249 rtPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~ 328 (922)
T 1nkt_A 249 RTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAK 328 (922)
T ss_dssp GSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHH
T ss_pred ccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHH
Confidence 3588999999999972 1367888 99999886444332 2
Q ss_pred HhcccCCeEE-------EEecC---------------------------ccccccccee---------------------
Q 008207 314 KFLKSDKKTI-------DLVGN---------------------------EKMKASTNVR--------------------- 338 (574)
Q Consensus 314 ~~~~~~~~~i-------~~~~~---------------------------~~~~~~~~i~--------------------- 338 (574)
.++..+..++ .+... ....+...+.
T Consensus 329 ~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te 408 (922)
T 1nkt_A 329 ELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTE 408 (922)
T ss_dssp HHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGG
T ss_pred HHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhH
Confidence 2332222111 11100 0000000111
Q ss_pred --------------------------EEEEeCCchhhhhhhhHHHH-hhcCCCeEEEEecChHHHHHHHHhCC----CCc
Q 008207 339 --------------------------HIVLPCSSSARSQVIPDIIR-CYSSGGRTIIFTETKESASQLADLLP----GAR 387 (574)
Q Consensus 339 --------------------------~~~~~~~~~~~~~~l~~ll~-~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~ 387 (574)
+.++.+....|...+...+. ....+.++||||+|++.++.|+..|. .+.
T Consensus 409 ~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~ 488 (922)
T 1nkt_A 409 AAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHN 488 (922)
T ss_dssp HHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEE
Confidence 11233455667777766664 34567799999999999999999997 577
Q ss_pred cccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCC---------------------------------------
Q 008207 388 ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV--------------------------------------- 428 (574)
Q Consensus 388 ~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v--------------------------------------- 428 (574)
++||++.+.++..+.++|+.| .|+||||+|+||+||+.+
T Consensus 489 vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (922)
T 1nkt_A 489 VLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEE 566 (922)
T ss_dssp EECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHH
T ss_pred EecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHH
Confidence 899998877777777888877 799999999999999975
Q ss_pred -------------cEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCCchH
Q 008207 429 -------------QLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS 469 (574)
Q Consensus 429 -------------~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~~~~ 469 (574)
.|||+|++|.|...|+||+|||||.|.+|.+++|++..+..
T Consensus 567 ~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l 620 (922)
T 1nkt_A 567 ASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDEL 620 (922)
T ss_dssp TTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHH
T ss_pred HHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHH
Confidence 59999999999999999999999999999999999987433
No 31
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.1e-45 Score=417.60 Aligned_cols=331 Identities=19% Similarity=0.247 Sum_probs=208.9
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHH
Q 008207 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (574)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~ 205 (574)
-.|+..|+|+|.++++.++.|+|+|+++|||||||++|++|++..+..... ..+.++|||+||++|+.|+++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--------~~~~~~Lvl~Pt~~L~~Q~~~ 314 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--------GRKAKVVFLATKVPVYEQQKN 314 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--------SCCCCEEEECSSHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc--------cCCCeEEEEeCCHHHHHHHHH
Confidence 458999999999999999999999999999999999999999999887532 234579999999999999999
Q ss_pred HHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCc-cCCCceEEEecCchhhhcCCcHHHHH-
Q 008207 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI-DLSSLKFRVLDEADEMLRMGFVEDVE- 283 (574)
Q Consensus 206 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~-~l~~~~~lVlDEah~~l~~~~~~~~~- 283 (574)
.+..++...++++..++|+.+...+...+..+++|+|+||++|.+++.++.+ .+.++++|||||||++...+....+.
T Consensus 315 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~ 394 (797)
T 4a2q_A 315 VFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMT 394 (797)
T ss_dssp HHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHH
T ss_pred HHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHH
Confidence 9999988788999999999987776667777899999999999999998877 78899999999999998766443332
Q ss_pred HHHHhc-c-CccCceEEEEeccCch-----------hHHHHHHH------------------hcccCCeEEEEecCcccc
Q 008207 284 LILGKV-E-DANKVQTLLFSATLPS-----------WVKHISTK------------------FLKSDKKTIDLVGNEKMK 332 (574)
Q Consensus 284 ~il~~l-~-~~~~~q~ll~SAT~~~-----------~~~~~~~~------------------~~~~~~~~i~~~~~~~~~ 332 (574)
.++... . ..+.+|+++||||++. .+..+... ++................
T Consensus 395 ~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 474 (797)
T 4a2q_A 395 RYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHN 474 (797)
T ss_dssp HHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCC
T ss_pred HHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCc
Confidence 222221 0 1235799999999852 22222111 111111111111000000
Q ss_pred c-c--------------c------ceeEEE---E----------------------------------------------
Q 008207 333 A-S--------------T------NVRHIV---L---------------------------------------------- 342 (574)
Q Consensus 333 ~-~--------------~------~i~~~~---~---------------------------------------------- 342 (574)
. . . .+.... +
T Consensus 475 ~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 554 (797)
T 4a2q_A 475 PFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYND 554 (797)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 0 0 0 000000 0
Q ss_pred -----------------------------------------------------eCCchhhhhhhhHHHHhh---cCCCeE
Q 008207 343 -----------------------------------------------------PCSSSARSQVIPDIIRCY---SSGGRT 366 (574)
Q Consensus 343 -----------------------------------------------------~~~~~~~~~~l~~ll~~~---~~~~~~ 366 (574)
......|...|..++... ..+.++
T Consensus 555 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kv 634 (797)
T 4a2q_A 555 ALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRT 634 (797)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCE
T ss_pred HHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeE
Confidence 000122344455555431 466899
Q ss_pred EEEecChHHHHHHHHhCC----------------CCccccccCCHHHHHHHHHHHhC-CCccEEEEeccccccCCCCCCc
Q 008207 367 IIFTETKESASQLADLLP----------------GARALHGDIQQSQREVTLAGFRS-GKFMTLVATNVAARGLDINDVQ 429 (574)
Q Consensus 367 lVF~~t~~~~~~l~~~l~----------------~~~~lh~~~~~~~r~~~~~~F~~-g~~~vLvaTd~~~~Gldi~~v~ 429 (574)
||||+++..++.|+..|. ....+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|+
T Consensus 635 LIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~ 714 (797)
T 4a2q_A 635 LLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCN 714 (797)
T ss_dssp EEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCS
T ss_pred EEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCC
Confidence 999999999999999883 33467899999999999999999 9999999999999999999999
Q ss_pred EEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 430 LIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 430 ~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
+||+||+|+|+..|+||+|| ||. +.|.|++|+++.
T Consensus 715 ~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~ 749 (797)
T 4a2q_A 715 LVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKT 749 (797)
T ss_dssp EEEEESCCSCHHHHHTC---------CCCEEEEECCH
T ss_pred EEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCC
Confidence 99999999999999999999 999 899999999876
No 32
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-44 Score=411.42 Aligned_cols=309 Identities=22% Similarity=0.271 Sum_probs=247.9
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHH
Q 008207 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (574)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~ 205 (574)
..+| .|+|+|.++++.++.|++++++||||||||++|.+|++..+..+ .++||++||++|+.|+++
T Consensus 82 ~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g-------------~rvL~l~PtkaLa~Q~~~ 147 (1010)
T 2xgj_A 82 TYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK-------------QRVIYTSPIKALSNQKYR 147 (1010)
T ss_dssp CCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTT-------------CEEEEEESSHHHHHHHHH
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccC-------------CeEEEECChHHHHHHHHH
Confidence 4466 49999999999999999999999999999999999999887543 369999999999999999
Q ss_pred HHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHH
Q 008207 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285 (574)
Q Consensus 206 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~i 285 (574)
.+..++. .+..++|+.... ..++|+|+||++|.+++.++...+.++++|||||||+|.++++...+..+
T Consensus 148 ~l~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~i 216 (1010)
T 2xgj_A 148 ELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEET 216 (1010)
T ss_dssp HHHHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHH
T ss_pred HHHHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHH
Confidence 9988764 677888887653 35899999999999999888888999999999999999999999999999
Q ss_pred HHhccCccCceEEEEeccCchhHH--HHHHHhcccCCeEEEEecCcccccccceeEEEEeCC---------chh------
Q 008207 286 LGKVEDANKVQTLLFSATLPSWVK--HISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS---------SSA------ 348 (574)
Q Consensus 286 l~~l~~~~~~q~ll~SAT~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~---------~~~------ 348 (574)
+..++. .+|+++||||+|+... .+..... ..+..+.... ..+..+.++++... ...
T Consensus 217 l~~l~~--~~~il~LSATi~n~~e~a~~l~~~~-~~~~~vi~~~----~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (1010)
T 2xgj_A 217 IILLPD--KVRYVFLSATIPNAMEFAEWICKIH-SQPCHIVYTN----FRPTPLQHYLFPAHGDGIYLVVDEKSTFREEN 289 (1010)
T ss_dssp HHHSCT--TCEEEEEECCCTTHHHHHHHHHHHH-TSCEEEEEEC----CCSSCEEEEEEETTSSCCEEEECTTCCBCHHH
T ss_pred HHhcCC--CCeEEEEcCCCCCHHHHHHHHHhhc-CCCeEEEecC----CCcccceEEEEecCCcceeeeeccccccchHH
Confidence 999876 7899999999987532 2222222 2222222221 11122333333211 000
Q ss_pred -----------------------------h--------hhhhhHHHHhh--cCCCeEEEEecChHHHHHHHHhCCC----
Q 008207 349 -----------------------------R--------SQVIPDIIRCY--SSGGRTIIFTETKESASQLADLLPG---- 385 (574)
Q Consensus 349 -----------------------------~--------~~~l~~ll~~~--~~~~~~lVF~~t~~~~~~l~~~l~~---- 385 (574)
+ ...+..++... ....++||||+++..++.++..|..
T Consensus 290 ~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~ 369 (1010)
T 2xgj_A 290 FQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFN 369 (1010)
T ss_dssp HHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCC
T ss_pred HHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCC
Confidence 0 12222333322 1445899999999999999988863
Q ss_pred ---------------------------------------CccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCC
Q 008207 386 ---------------------------------------ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426 (574)
Q Consensus 386 ---------------------------------------~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~ 426 (574)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+|
T Consensus 370 ~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP 449 (1010)
T 2xgj_A 370 SDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMP 449 (1010)
T ss_dssp CHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCC
T ss_pred ChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCC
Confidence 45689999999999999999999999999999999999999
Q ss_pred CCcEEEE----eCC----CCCHhHHHHHhcccccCCC--cceEEEEECCC
Q 008207 427 DVQLIIQ----CEP----PRDVEAYIHRSGRTGRAGN--TGVAVMLYDPR 466 (574)
Q Consensus 427 ~v~~VI~----~d~----p~s~~~yiqr~GR~gR~g~--~G~~i~l~~~~ 466 (574)
++++||+ ||. |.++..|+||+|||||.|. .|.|++|+++.
T Consensus 450 ~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 450 AKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp BSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred CceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 9999999 999 9999999999999999997 59999999876
No 33
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.2e-44 Score=413.30 Aligned_cols=331 Identities=19% Similarity=0.246 Sum_probs=207.1
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHH
Q 008207 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (574)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~ 205 (574)
-.|+..|+|+|.++++.++.|+|+|++++||||||++|++|+++.+..... ..+.++|||+||++|+.|+++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~--------~~~~~vLvl~Pt~~L~~Q~~~ 314 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--------GRKAKVVFLATKVPVYEQQKN 314 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS--------SCCCCEEEECSSHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc--------cCCCeEEEEeCCHHHHHHHHH
Confidence 457889999999999999999999999999999999999999988766431 224579999999999999999
Q ss_pred HHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCc-cCCCceEEEecCchhhhcCCcHHHHH-
Q 008207 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI-DLSSLKFRVLDEADEMLRMGFVEDVE- 283 (574)
Q Consensus 206 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~-~l~~~~~lVlDEah~~l~~~~~~~~~- 283 (574)
++..++...++++..++|+.+...+...+..+++|+|+||++|.+++.++.+ .+.++++|||||||++...+....+.
T Consensus 315 ~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~ 394 (936)
T 4a2w_A 315 VFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMT 394 (936)
T ss_dssp HHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHH
T ss_pred HHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHH
Confidence 9999988789999999999977665555666799999999999999998777 78899999999999998765433322
Q ss_pred HHHHhc-c-CccCceEEEEeccCch-----------hHHHHHH------------------HhcccCCeEEEEecCcccc
Q 008207 284 LILGKV-E-DANKVQTLLFSATLPS-----------WVKHIST------------------KFLKSDKKTIDLVGNEKMK 332 (574)
Q Consensus 284 ~il~~l-~-~~~~~q~ll~SAT~~~-----------~~~~~~~------------------~~~~~~~~~i~~~~~~~~~ 332 (574)
.++... . ..+..|+++||||++. .+..+.. .++................
T Consensus 395 ~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~ 474 (936)
T 4a2w_A 395 RYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHN 474 (936)
T ss_dssp HHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCC
T ss_pred HHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCc
Confidence 222221 0 1235799999999852 1211111 1111111111111000000
Q ss_pred c-c--------------------cc---eeEEEE----------------------------------------------
Q 008207 333 A-S--------------------TN---VRHIVL---------------------------------------------- 342 (574)
Q Consensus 333 ~-~--------------------~~---i~~~~~---------------------------------------------- 342 (574)
. . .. +....+
T Consensus 475 ~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~ 554 (936)
T 4a2w_A 475 PFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYND 554 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 0 0 00 000000
Q ss_pred -----------------------------------------------------eCCchhhhhhhhHHHHhh---cCCCeE
Q 008207 343 -----------------------------------------------------PCSSSARSQVIPDIIRCY---SSGGRT 366 (574)
Q Consensus 343 -----------------------------------------------------~~~~~~~~~~l~~ll~~~---~~~~~~ 366 (574)
......+...|..++... ..+.++
T Consensus 555 al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rv 634 (936)
T 4a2w_A 555 ALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRT 634 (936)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCE
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeE
Confidence 000122333444455432 356899
Q ss_pred EEEecChHHHHHHHHhCC----------------CCccccccCCHHHHHHHHHHHhC-CCccEEEEeccccccCCCCCCc
Q 008207 367 IIFTETKESASQLADLLP----------------GARALHGDIQQSQREVTLAGFRS-GKFMTLVATNVAARGLDINDVQ 429 (574)
Q Consensus 367 lVF~~t~~~~~~l~~~l~----------------~~~~lh~~~~~~~r~~~~~~F~~-g~~~vLvaTd~~~~Gldi~~v~ 429 (574)
||||+++..++.|+..|. ....+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|+
T Consensus 635 LIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~ 714 (936)
T 4a2w_A 635 LLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCN 714 (936)
T ss_dssp EEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCS
T ss_pred EEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCC
Confidence 999999999999999885 23457899999999999999999 9999999999999999999999
Q ss_pred EEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 430 LIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 430 ~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
+||+||+|+|+..|+||+|| ||. +.|.+++|++..
T Consensus 715 ~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~ 749 (936)
T 4a2w_A 715 LVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKT 749 (936)
T ss_dssp EEEEESCCSCSHHHHCC---------CCCEEEEESCH
T ss_pred EEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCC
Confidence 99999999999999999999 999 789999999876
No 34
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.1e-43 Score=377.46 Aligned_cols=319 Identities=23% Similarity=0.274 Sum_probs=243.1
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHh
Q 008207 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (574)
Q Consensus 131 ~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (574)
.|+|+|.++++.++.+ ++++.++||+|||++++++++..+... +.++|||+|+++|+.||.+++..+
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~------------~~~~liv~P~~~L~~q~~~~~~~~ 75 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKY------------GGKVLMLAPTKPLVLQHAESFRRL 75 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHS------------CSCEEEECSSHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcC------------CCeEEEEECCHHHHHHHHHHHHHH
Confidence 7999999999999999 999999999999999999999887621 235999999999999999999988
Q ss_pred hCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHhcc
Q 008207 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290 (574)
Q Consensus 211 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~ 290 (574)
....+..+..++|+....... .....++|+|+||++|...+.++.+.+.++++||+||||++.+......+...+....
T Consensus 76 ~~~~~~~v~~~~g~~~~~~~~-~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~ 154 (494)
T 1wp9_A 76 FNLPPEKIVALTGEKSPEERS-KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA 154 (494)
T ss_dssp BCSCGGGEEEECSCSCHHHHH-HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHC
T ss_pred hCcchhheEEeeCCcchhhhh-hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcC
Confidence 755556889999988766433 3334589999999999999988888899999999999999986655555555555444
Q ss_pred CccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCccc-----ccccceeEEEEeC---------------------
Q 008207 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKM-----KASTNVRHIVLPC--------------------- 344 (574)
Q Consensus 291 ~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~i~~~~~~~--------------------- 344 (574)
. ..++++||||++.....+...+-.-....+........ .............
T Consensus 155 ~--~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (494)
T 1wp9_A 155 K--NPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKP 232 (494)
T ss_dssp S--SCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH
T ss_pred C--CCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3 57899999999743333222211011111111110000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 008207 345 -------------------------------------------------------------------------------- 344 (574)
Q Consensus 345 -------------------------------------------------------------------------------- 344 (574)
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 312 (494)
T 1wp9_A 233 LAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGS 312 (494)
T ss_dssp HHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhcccc
Confidence
Q ss_pred ---------------------------CchhhhhhhhHHHHhh---cCCCeEEEEecChHHHHHHHHhCC----CCcccc
Q 008207 345 ---------------------------SSSARSQVIPDIIRCY---SSGGRTIIFTETKESASQLADLLP----GARALH 390 (574)
Q Consensus 345 ---------------------------~~~~~~~~l~~ll~~~---~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh 390 (574)
....+...+..++... ..+.++||||+++..++.++..|. .+..+|
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~ 392 (494)
T 1wp9_A 313 TKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFV 392 (494)
T ss_dssp CHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEe
Confidence 1223445555666543 468899999999999999999987 567899
Q ss_pred c--------cCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEE
Q 008207 391 G--------DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462 (574)
Q Consensus 391 ~--------~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l 462 (574)
| ++++.+|..+++.|++|.++|||||+++++|||+|++++||+||+|+++..|+||+||+||.|+ |.++.|
T Consensus 393 g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l 471 (494)
T 1wp9_A 393 GQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIIL 471 (494)
T ss_dssp CSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEE
T ss_pred ccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEE
Confidence 9 9999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred ECCC
Q 008207 463 YDPR 466 (574)
Q Consensus 463 ~~~~ 466 (574)
+++.
T Consensus 472 ~~~~ 475 (494)
T 1wp9_A 472 MAKG 475 (494)
T ss_dssp EETT
T ss_pred EecC
Confidence 9987
No 35
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=6.2e-43 Score=398.78 Aligned_cols=308 Identities=19% Similarity=0.208 Sum_probs=238.6
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHH
Q 008207 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (574)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (574)
.+| .|+|+|.++|+.++.|+|++++||||||||++|++|+...+..+ .++||++||++|+.|+++.
T Consensus 36 ~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g-------------~~vlvl~PtraLa~Q~~~~ 101 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNM-------------TKTIYTSPIKALSNQKFRD 101 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTT-------------CEEEEEESCGGGHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcC-------------CeEEEEeCCHHHHHHHHHH
Confidence 355 58999999999999999999999999999999999998876543 3699999999999999999
Q ss_pred HHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHH
Q 008207 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286 (574)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il 286 (574)
+..++. ++.+..++|+.... ..++|+|+||++|.+++.++...+.++++|||||||++.+++|...+..++
T Consensus 102 l~~~~~--~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii 172 (997)
T 4a4z_A 102 FKETFD--DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVI 172 (997)
T ss_dssp HHTTC----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHH
T ss_pred HHHHcC--CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHH
Confidence 987643 67889999987643 448999999999999998888888999999999999999999999999999
Q ss_pred HhccCccCceEEEEeccCchhHHHHHHHhcccC-CeEEEEecCcccccccceeEEE------------------------
Q 008207 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLKSD-KKTIDLVGNEKMKASTNVRHIV------------------------ 341 (574)
Q Consensus 287 ~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~i~~~~------------------------ 341 (574)
..++. .+|+++||||+|+.. .+...+.... .....+.... .+..+.+.+
T Consensus 173 ~~l~~--~v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~---r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 246 (997)
T 4a4z_A 173 IMLPQ--HVKFILLSATVPNTY-EFANWIGRTKQKNIYVISTPK---RPVPLEINIWAKKELIPVINQNSEFLEANFRKH 246 (997)
T ss_dssp HHSCT--TCEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSS---CSSCEEEEEEETTEEEEEECTTCCBCHHHHHHH
T ss_pred Hhccc--CCCEEEEcCCCCChH-HHHHHHhcccCCceEEEecCC---CCccceEEEecCCcchhcccchhhhhHHHHHHH
Confidence 99886 789999999998654 3333221110 1111011000 011111111
Q ss_pred ---------------------------------------------------------------------EeCCchhhhhh
Q 008207 342 ---------------------------------------------------------------------LPCSSSARSQV 352 (574)
Q Consensus 342 ---------------------------------------------------------------------~~~~~~~~~~~ 352 (574)
..+........
T Consensus 247 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (997)
T 4a4z_A 247 KEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPE 326 (997)
T ss_dssp HHHHC-----------------------------------------------------------------CCCCTTHHHH
T ss_pred HHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHH
Confidence 01111122233
Q ss_pred hhHHHHhhcCCCeEEEEecChHHHHHHHHhCCC-------------------------------------------Cccc
Q 008207 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPG-------------------------------------------ARAL 389 (574)
Q Consensus 353 l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-------------------------------------------~~~l 389 (574)
+...+... ...++||||+++..++.++..|.. +.++
T Consensus 327 li~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~ 405 (997)
T 4a4z_A 327 IVNYLRKR-ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVH 405 (997)
T ss_dssp HHHHHHHT-TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEE
T ss_pred HHHHHHhC-CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeee
Confidence 44444433 457999999999999999998852 5689
Q ss_pred cccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEeCCCC---------CHhHHHHHhcccccCC--Ccce
Q 008207 390 HGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR---------DVEAYIHRSGRTGRAG--NTGV 458 (574)
Q Consensus 390 h~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~---------s~~~yiqr~GR~gR~g--~~G~ 458 (574)
||+|++.+|..+++.|++|.++|||||+++++|||+|++ .||+++.|. ++..|+||+|||||.| ..|.
T Consensus 406 H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~-~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~ 484 (997)
T 4a4z_A 406 HGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTR-TVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGT 484 (997)
T ss_dssp CTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCS-EEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEE
T ss_pred cCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCc-eEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceE
Confidence 999999999999999999999999999999999999994 555544444 9999999999999998 5788
Q ss_pred EEEEECC
Q 008207 459 AVMLYDP 465 (574)
Q Consensus 459 ~i~l~~~ 465 (574)
||+++..
T Consensus 485 vi~l~~~ 491 (997)
T 4a4z_A 485 VIVMAYN 491 (997)
T ss_dssp EEEECCS
T ss_pred EEEecCC
Confidence 9888843
No 36
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.1e-43 Score=397.33 Aligned_cols=327 Identities=20% Similarity=0.263 Sum_probs=223.5
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHH-HHHHH
Q 008207 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV-HEDFD 208 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv-~~~~~ 208 (574)
..|+|+|.++++.++.|+|+|+++|||+|||++|++|+++.+..... ...+.++|||+|+++|+.|+ .+++.
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~-------~~~~~~vlvl~P~~~L~~Q~~~~~l~ 78 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK-------ASEPGKVIVLVNKVLLVEQLFRKEFQ 78 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH-------HTCCCCBCCEESCSHHHHHHHHHTHH
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc-------cCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999988765421 01224699999999999999 99999
Q ss_pred HhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhH------hcCCccCCCceEEEecCchhhhcCCcHHHH
Q 008207 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI------ERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282 (574)
Q Consensus 209 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l------~~~~~~l~~~~~lVlDEah~~l~~~~~~~~ 282 (574)
.++.. ++.+..++|+.....+...+...++|+|+||++|.+++ ..+.+.+.++++|||||||++...+++..+
T Consensus 79 ~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i 157 (699)
T 4gl2_A 79 PFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNI 157 (699)
T ss_dssp HHHTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSH
T ss_pred HHcCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHH
Confidence 88765 58999999998776555566677999999999999988 445577889999999999998654433322
Q ss_pred H-HHHHhc----c-------CccCceEEEEeccCchh-----------HHHHHHHhcc------------------cCCe
Q 008207 283 E-LILGKV----E-------DANKVQTLLFSATLPSW-----------VKHISTKFLK------------------SDKK 321 (574)
Q Consensus 283 ~-~il~~l----~-------~~~~~q~ll~SAT~~~~-----------~~~~~~~~~~------------------~~~~ 321 (574)
. ..+... . ..+.+++++||||++.. +..+...+-. ....
T Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~ 237 (699)
T 4gl2_A 158 MRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCK 237 (699)
T ss_dssp HHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEE
T ss_pred HHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCce
Confidence 2 222211 0 00256999999999862 2222222110 0001
Q ss_pred EEEEecCcccc--------------------ccccee-------------------------------------------
Q 008207 322 TIDLVGNEKMK--------------------ASTNVR------------------------------------------- 338 (574)
Q Consensus 322 ~i~~~~~~~~~--------------------~~~~i~------------------------------------------- 338 (574)
.+......... ......
T Consensus 238 ~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 317 (699)
T 4gl2_A 238 KFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTI 317 (699)
T ss_dssp EEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 11110000000 000000
Q ss_pred -----------------------------------------------------EEEEe-CCchhhhhhhhHHHHhh---c
Q 008207 339 -----------------------------------------------------HIVLP-CSSSARSQVIPDIIRCY---S 361 (574)
Q Consensus 339 -----------------------------------------------------~~~~~-~~~~~~~~~l~~ll~~~---~ 361 (574)
..... .....+...|..++... .
T Consensus 318 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~ 397 (699)
T 4gl2_A 318 RMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRT 397 (699)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcC
Confidence 00000 00112333344444332 1
Q ss_pred C-CCeEEEEecChHHHHHHHHhCC----------CCcccccc--------CCHHHHHHHHHHHhCCCccEEEEecccccc
Q 008207 362 S-GGRTIIFTETKESASQLADLLP----------GARALHGD--------IQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (574)
Q Consensus 362 ~-~~~~lVF~~t~~~~~~l~~~l~----------~~~~lh~~--------~~~~~r~~~~~~F~~g~~~vLvaTd~~~~G 422 (574)
. ++++||||+++..++.|+..|. .+..+||+ |++.+|..+++.|++|+++|||||+++++|
T Consensus 398 ~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~G 477 (699)
T 4gl2_A 398 EESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEG 477 (699)
T ss_dssp SSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTT
T ss_pred CCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccC
Confidence 2 7899999999999999999874 45689999 999999999999999999999999999999
Q ss_pred CCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 423 ldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
||+|+|++||+||+|+|+..|+||+||+||.| +.+++++...
T Consensus 478 IDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~ 519 (699)
T 4gl2_A 478 LDIKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSG 519 (699)
T ss_dssp SCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESS
T ss_pred CccccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCC
Confidence 99999999999999999999999999976654 3334444433
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.4e-42 Score=383.89 Aligned_cols=316 Identities=22% Similarity=0.291 Sum_probs=238.0
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHhcC------CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEE
Q 008207 118 VPLREKLKSKGIESLFPIQAMTFDMVLDG------SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVL 191 (574)
Q Consensus 118 ~~l~~~l~~~g~~~~~~~Q~~~i~~il~~------~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~L 191 (574)
..+...+...+| .||++|.++++.++.+ .+++++|+||||||++|++|++..+..+ .+++
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g-------------~qvl 421 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG-------------FQTA 421 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT-------------SCEE
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC-------------CeEE
Confidence 445555678899 9999999999999865 5999999999999999999999988643 3599
Q ss_pred EEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHH---Hhc-CCCcEEEEChHHHHHhHhcCCccCCCceEEEe
Q 008207 192 VLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF---KLK-KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (574)
Q Consensus 192 il~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~-~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVl 267 (574)
|++||++||.|+++.+..+....++++..++|+.+...... .+. ..++|+|+||+++.+ .+.+.++++||+
T Consensus 422 vlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVI 496 (780)
T 1gm5_A 422 FMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVII 496 (780)
T ss_dssp EECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEE
T ss_pred EEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEe
Confidence 99999999999999999998888999999999988765432 333 359999999998855 356889999999
Q ss_pred cCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCch
Q 008207 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (574)
Q Consensus 268 DEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 347 (574)
||+|++. +.. ...+... ...+++++||||+.+....+. +. .......+.... .....+...+. ...
T Consensus 497 DEaHr~g---~~q--r~~l~~~--~~~~~vL~mSATp~p~tl~~~--~~-g~~~~s~i~~~p--~~r~~i~~~~~--~~~ 562 (780)
T 1gm5_A 497 DEQHRFG---VKQ--REALMNK--GKMVDTLVMSATPIPRSMALA--FY-GDLDVTVIDEMP--PGRKEVQTMLV--PMD 562 (780)
T ss_dssp ESCCCC----------CCCCSS--SSCCCEEEEESSCCCHHHHHH--HT-CCSSCEEECCCC--SSCCCCEECCC--CSS
T ss_pred cccchhh---HHH--HHHHHHh--CCCCCEEEEeCCCCHHHHHHH--Hh-CCcceeeeeccC--CCCcceEEEEe--ccc
Confidence 9999863 111 1111111 225799999999876543332 22 122111111110 11122322222 222
Q ss_pred hhhhhhhHHHHhhcCCCeEEEEecChH--------HHHHHHHhCC-------CCccccccCCHHHHHHHHHHHhCCCccE
Q 008207 348 ARSQVIPDIIRCYSSGGRTIIFTETKE--------SASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMT 412 (574)
Q Consensus 348 ~~~~~l~~ll~~~~~~~~~lVF~~t~~--------~~~~l~~~l~-------~~~~lh~~~~~~~r~~~~~~F~~g~~~v 412 (574)
....++..+......+++++|||++.+ .++.++..|. .+..+||+|++.+|..+++.|++|+++|
T Consensus 563 ~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~I 642 (780)
T 1gm5_A 563 RVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDI 642 (780)
T ss_dssp THHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSB
T ss_pred hHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeE
Confidence 233344444445567789999999764 3566666554 4778999999999999999999999999
Q ss_pred EEEeccccccCCCCCCcEEEEeCCCC-CHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 413 LVATNVAARGLDINDVQLIIQCEPPR-DVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 413 LvaTd~~~~Gldi~~v~~VI~~d~p~-s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
||||+++++|||+|++++||++|.|. +...|.||+||+||.|+.|.|++++++.
T Consensus 643 LVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~ 697 (780)
T 1gm5_A 643 LVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDV 697 (780)
T ss_dssp CCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSC
T ss_pred EEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCC
Confidence 99999999999999999999999996 6888999999999999999999999864
No 38
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1e-41 Score=404.77 Aligned_cols=338 Identities=19% Similarity=0.215 Sum_probs=254.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhc-CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEe
Q 008207 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLD-GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194 (574)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~-~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~ 194 (574)
|.....+++...+|..++|+|.++++.++. ++|++++||||||||++|.+|++..+.... +.++||++
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~-----------~~kavyi~ 979 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-----------EGRCVYIT 979 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-----------TCCEEEEC
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-----------CCEEEEEc
Confidence 455677888888999999999999999975 578999999999999999999999987542 23599999
Q ss_pred CcHHHHHHHHHHHH-HhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcC--CccCCCceEEEecCch
Q 008207 195 PTRELAKQVHEDFD-VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG--NIDLSSLKFRVLDEAD 271 (574)
Q Consensus 195 PtreLa~Qv~~~~~-~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~--~~~l~~~~~lVlDEah 271 (574)
|+|+||.|+++++. .++...++++..++|+....... ..+++|+||||++|..++.+. ...++++++||+||+|
T Consensus 980 P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~---~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H 1056 (1724)
T 4f92_B 980 PMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKL---LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVH 1056 (1724)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHH---HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGG
T ss_pred ChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhh---cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechh
Confidence 99999999999996 56777899999999987654332 234899999999997666542 2347889999999999
Q ss_pred hhhcCCcHHHHHHHHHhcc-----CccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCc
Q 008207 272 EMLRMGFVEDVELILGKVE-----DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (574)
Q Consensus 272 ~~l~~~~~~~~~~il~~l~-----~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 346 (574)
.|.+ ..+..++.++..+. ..+++|+++||||+++ ...++...-........+... ..+..+...+.....
T Consensus 1057 ~l~d-~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~---~RPvpL~~~i~~~~~ 1131 (1724)
T 4f92_B 1057 LIGG-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPN---VRPVPLELHIQGFNI 1131 (1724)
T ss_dssp GGGS-TTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGG---GCSSCEEEEEEEECC
T ss_pred hcCC-CCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCC---CCCCCeEEEEEeccC
Confidence 8865 45666666654432 1236899999999986 344544332222222222222 122233333322221
Q ss_pred hh-------hhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC-----------------------------------
Q 008207 347 SA-------RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----------------------------------- 384 (574)
Q Consensus 347 ~~-------~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----------------------------------- 384 (574)
.. ....+...+.....++++||||+|+..++.++..|.
T Consensus 1132 ~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~ 1211 (1724)
T 4f92_B 1132 SHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKET 1211 (1724)
T ss_dssp CSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHH
T ss_pred CCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHH
Confidence 11 112234455556688999999999999887765431
Q ss_pred ---CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEE----------eCCCCCHhHHHHHhcccc
Q 008207 385 ---GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----------CEPPRDVEAYIHRSGRTG 451 (574)
Q Consensus 385 ---~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~----------~d~p~s~~~yiqr~GR~g 451 (574)
+++++||+|++.+|..+.+.|++|.++|||||+++++|||+|++.+||. ...|.++.+|+||+||||
T Consensus 1212 l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAG 1291 (1724)
T 4f92_B 1212 LLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHAN 1291 (1724)
T ss_dssp HHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBC
T ss_pred HhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhcccc
Confidence 4678999999999999999999999999999999999999999999993 334779999999999999
Q ss_pred cCCC--cceEEEEECCC-chHHHH
Q 008207 452 RAGN--TGVAVMLYDPR-KSSVSK 472 (574)
Q Consensus 452 R~g~--~G~~i~l~~~~-~~~~~~ 472 (574)
|.|. .|.|++++.+. ...+++
T Consensus 1292 R~g~d~~G~avll~~~~~~~~~~~ 1315 (1724)
T 4f92_B 1292 RPLQDDEGRCVIMCQGSKKDFFKK 1315 (1724)
T ss_dssp CTTTCSCEEEEEEEEGGGHHHHHH
T ss_pred CCCCCCceEEEEEecchHHHHHHH
Confidence 9997 79999999876 444433
No 39
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=4e-43 Score=381.71 Aligned_cols=310 Identities=16% Similarity=0.146 Sum_probs=231.7
Q ss_pred cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEE
Q 008207 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193 (574)
Q Consensus 114 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil 193 (574)
+++++.+.++|... ...++|+|+.+++.+++|+|++++|+||||||++|++|+++.+... ++++||+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~------------~~~vLvl 221 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR------------RLRTLIL 221 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT------------TCCEEEE
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC------------CCeEEEE
Confidence 45666666655543 5789999998999999999999999999999999999999887642 2469999
Q ss_pred eCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhh
Q 008207 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (574)
Q Consensus 194 ~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~ 273 (574)
+|||+||.|+++.+. ++.+. +.++. .. .....+..+.++|.+.+...+... ..+.++++|||||||+|
T Consensus 222 ~PtreLa~Qi~~~l~------~~~v~-~~~~~-l~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~ 289 (618)
T 2whx_A 222 APTRVVAAEMEEALR------GLPIR-YQTPA-VK---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT 289 (618)
T ss_dssp ESSHHHHHHHHHHTT------TSCEE-ECCTT-SS---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC
T ss_pred cChHHHHHHHHHHhc------CCcee-Eeccc-ce---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC
Confidence 999999999998875 23333 11111 00 011234567788888887766654 35899999999999998
Q ss_pred hcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhhhhhh
Q 008207 274 LRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353 (574)
Q Consensus 274 l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l 353 (574)
+.+|...+..++..++. +.+|+++||||++..+.. +....+..+.+... .+.......+
T Consensus 290 -~~~~~~~~~~i~~~l~~-~~~q~il~SAT~~~~~~~----~~~~~~~~~~v~~~---------------~~~~~~~~ll 348 (618)
T 2whx_A 290 -DPCSVAARGYISTRVEM-GEAAAIFMTATPPGSTDP----FPQSNSPIEDIERE---------------IPERSWNTGF 348 (618)
T ss_dssp -SHHHHHHHHHHHHHHHH-TSCEEEEECSSCTTCCCS----SCCCSSCEEEEECC---------------CCSSCCSSSC
T ss_pred -CccHHHHHHHHHHHhcc-cCccEEEEECCCchhhhh----hhccCCceeeeccc---------------CCHHHHHHHH
Confidence 77788888888887752 268999999999876432 22223333333221 0111112223
Q ss_pred hHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCc
Q 008207 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQ 429 (574)
Q Consensus 354 ~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~ 429 (574)
..+.. .++++||||+|++.++.++..|. .+..+||+ +|.++++.|++|+.+||||||++++|||+| ++
T Consensus 349 ~~l~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~ 420 (618)
T 2whx_A 349 DWITD---YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AG 420 (618)
T ss_dssp HHHHH---CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CS
T ss_pred HHHHh---CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ce
Confidence 33332 36799999999999999999986 56788884 788899999999999999999999999997 99
Q ss_pred EE--------------------EEeCCCCCHhHHHHHhcccccCCC-cceEEEEEC---CC-chHHHHHHHHh
Q 008207 430 LI--------------------IQCEPPRDVEAYIHRSGRTGRAGN-TGVAVMLYD---PR-KSSVSKIERES 477 (574)
Q Consensus 430 ~V--------------------I~~d~p~s~~~yiqr~GR~gR~g~-~G~~i~l~~---~~-~~~~~~i~~~~ 477 (574)
+| |+|++|.+.++|+||+|||||.|. .|.|++|++ +. ...+..+++.+
T Consensus 421 ~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 421 RVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred EEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 88 788889999999999999999975 999999997 55 66778888764
No 40
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.2e-40 Score=385.38 Aligned_cols=320 Identities=21% Similarity=0.232 Sum_probs=250.8
Q ss_pred ccCCCHHHHHHHH-HCCCCCCcHHHHHHHHHHhc----CC--cEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCC
Q 008207 113 RFRISVPLREKLK-SKGIESLFPIQAMTFDMVLD----GS--DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (574)
Q Consensus 113 ~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~il~----~~--dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 185 (574)
.++.+....+.+. ..+| .+||+|.++++.++. |+ |++++++||+|||++|+++++..+..+
T Consensus 585 ~~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g----------- 652 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH----------- 652 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT-----------
T ss_pred CCCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhC-----------
Confidence 3556777777764 4577 479999999999886 66 999999999999999999998776533
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHH---HHhcC-CCcEEEEChHHHHHhHhcCCccCCC
Q 008207 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE---FKLKK-GIDVVIGTPGRIKDHIERGNIDLSS 261 (574)
Q Consensus 186 ~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~~IlV~Tp~~l~~~l~~~~~~l~~ 261 (574)
.+++|++||++||.|+++.+..+....++++..++|..+...+. ..+.. .++|+|+||+.|. ..+.+.+
T Consensus 653 --~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~ 725 (1151)
T 2eyq_A 653 --KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKD 725 (1151)
T ss_dssp --CEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSS
T ss_pred --CeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccc
Confidence 36999999999999999999988777789999998877655443 23333 5999999998763 3467889
Q ss_pred ceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEE
Q 008207 262 LKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV 341 (574)
Q Consensus 262 ~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~ 341 (574)
+++|||||||++ + .....++..++. ..++++||||+++....+....+ .+...+. .. ......+...+
T Consensus 726 l~lvIiDEaH~~---g--~~~~~~l~~l~~--~~~vl~lSATp~p~~l~~~~~~~-~~~~~i~---~~-~~~r~~i~~~~ 793 (1151)
T 2eyq_A 726 LGLLIVDEEHRF---G--VRHKERIKAMRA--NVDILTLTATPIPRTLNMAMSGM-RDLSIIA---TP-PARRLAVKTFV 793 (1151)
T ss_dssp EEEEEEESGGGS---C--HHHHHHHHHHHT--TSEEEEEESSCCCHHHHHHHTTT-SEEEECC---CC-CCBCBCEEEEE
T ss_pred cceEEEechHhc---C--hHHHHHHHHhcC--CCCEEEEcCCCChhhHHHHHhcC-CCceEEe---cC-CCCccccEEEE
Confidence 999999999985 2 334555566654 67999999998776655554444 2222221 11 11223344444
Q ss_pred EeCCchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC------CCccccccCCHHHHHHHHHHHhCCCccEEEE
Q 008207 342 LPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVA 415 (574)
Q Consensus 342 ~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLva 415 (574)
..... ......++.....+++++|||++++.++.++..|. .+..+||+|++.+|..+++.|++|+++||||
T Consensus 794 ~~~~~---~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVa 870 (1151)
T 2eyq_A 794 REYDS---MVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVC 870 (1151)
T ss_dssp EECCH---HHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEE
T ss_pred ecCCH---HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 43332 33445555556678999999999999998888774 5778999999999999999999999999999
Q ss_pred eccccccCCCCCCcEEEEeCC-CCCHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 416 TNVAARGLDINDVQLIIQCEP-PRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 416 Td~~~~Gldi~~v~~VI~~d~-p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
|+++++|||+|++++||+++. +.+..+|+||+||+||.|+.|.||+++.+.
T Consensus 871 T~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 871 TTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp SSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 999999999999999999998 579999999999999999999999999875
No 41
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.3e-41 Score=401.76 Aligned_cols=336 Identities=18% Similarity=0.262 Sum_probs=249.6
Q ss_pred CCCCCcHHHHHHHHHHh-cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHH
Q 008207 128 GIESLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (574)
Q Consensus 128 g~~~~~~~Q~~~i~~il-~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (574)
||.+++++|.+++|.++ .++|++++||||||||++|.+|++..+....... +.....+.++||++|+|+||.|+++.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~--~~~~~~~~k~lyiaP~kALa~e~~~~ 153 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMD--GTINVDDFKIIYIAPMRSLVQEMVGS 153 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTT--SSCCTTSCEEEEECSSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhcccc--ccccCCCCEEEEECCHHHHHHHHHHH
Confidence 89999999999999987 5789999999999999999999999997643211 11124567899999999999999999
Q ss_pred HHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCC--ccCCCceEEEecCchhhhcCCcHHHHHH
Q 008207 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN--IDLSSLKFRVLDEADEMLRMGFVEDVEL 284 (574)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~--~~l~~~~~lVlDEah~~l~~~~~~~~~~ 284 (574)
|.......|++|..++|+.....+. ...++|+|+||+++..++.+.. ..++++++||+||+|.+-+ ..+..++.
T Consensus 154 l~~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~ 229 (1724)
T 4f92_B 154 FGKRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEA 229 (1724)
T ss_dssp HHHHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHH
T ss_pred HHHHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHH
Confidence 9888888899999999998754321 2458999999999854444332 2378899999999996644 56666666
Q ss_pred HHHhcc-----CccCceEEEEeccCchhHHHHHHHhcccCC-eEEEEecCcccccccceeEEEEeCCchh---h----hh
Q 008207 285 ILGKVE-----DANKVQTLLFSATLPSWVKHISTKFLKSDK-KTIDLVGNEKMKASTNVRHIVLPCSSSA---R----SQ 351 (574)
Q Consensus 285 il~~l~-----~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~i~~~~~~~~~~~---~----~~ 351 (574)
++..+. ..+++|+|++|||+|+ ...++ .|+...+ ..+.+.... ..+..+.+.++...... . ..
T Consensus 230 ~l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA-~wL~~~~~~~~~~~~~~--~RPvpL~~~~~~~~~~~~~~~~~~~~~ 305 (1724)
T 4f92_B 230 LVARAIRNIEMTQEDVRLIGLSATLPN-YEDVA-TFLRVDPAKGLFYFDNS--FRPVPLEQTYVGITEKKAIKRFQIMNE 305 (1724)
T ss_dssp HHHHHHHHHHHHTCCCEEEEEECSCTT-HHHHH-HHTTCCHHHHEEECCGG--GCSSCEEEECCEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcEEEEecccCC-HHHHH-HHhCCCCCCCeEEECCC--CccCccEEEEeccCCcchhhhhHHHHH
Confidence 654321 1236899999999986 34444 3453221 112222211 22334455444333221 1 12
Q ss_pred hhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC-----------------------------------------CCcccc
Q 008207 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP-----------------------------------------GARALH 390 (574)
Q Consensus 352 ~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~-----------------------------------------~~~~lh 390 (574)
.+...+.....++++||||+|++.++.++..|. +++++|
T Consensus 306 ~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HH 385 (1724)
T 4f92_B 306 IVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHH 385 (1724)
T ss_dssp HHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEEC
T ss_pred HHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEc
Confidence 233334444467899999999988877665541 366799
Q ss_pred ccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEE----eC------CCCCHhHHHHHhcccccCCC--cce
Q 008207 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----CE------PPRDVEAYIHRSGRTGRAGN--TGV 458 (574)
Q Consensus 391 ~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~----~d------~p~s~~~yiqr~GR~gR~g~--~G~ 458 (574)
|+|++.+|..+.+.|++|.++|||||+++++|||+|++++||. |+ .|.++.+|.||+|||||.|. .|.
T Consensus 386 agL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~ 465 (1724)
T 4f92_B 386 AGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGE 465 (1724)
T ss_dssp SSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccE
Confidence 9999999999999999999999999999999999999999995 54 35689999999999999875 799
Q ss_pred EEEEECCC-chHHHHH
Q 008207 459 AVMLYDPR-KSSVSKI 473 (574)
Q Consensus 459 ~i~l~~~~-~~~~~~i 473 (574)
++++.++. ...+..+
T Consensus 466 ~ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 466 GILITSHGELQYYLSL 481 (1724)
T ss_dssp EEEEEESTTCCHHHHH
T ss_pred EEEEecchhHHHHHHH
Confidence 99999887 4444444
No 42
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=2.8e-42 Score=371.38 Aligned_cols=305 Identities=19% Similarity=0.212 Sum_probs=229.7
Q ss_pred HHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHH
Q 008207 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (574)
Q Consensus 124 l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv 203 (574)
+.......++++|..+++.+..+++++++|+||||||++|.+|+++. +.++||++|||+||.|+
T Consensus 210 l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~----------------g~~vLVl~PTReLA~Qi 273 (666)
T 3o8b_A 210 METTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ----------------GYKVLVLNPSVAATLGF 273 (666)
T ss_dssp HHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT----------------TCCEEEEESCHHHHHHH
T ss_pred hhhhccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC----------------CCeEEEEcchHHHHHHH
Confidence 33333335667777777777789999999999999999999998862 12599999999999999
Q ss_pred HHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHH
Q 008207 204 HEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283 (574)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~ 283 (574)
++.+.... +..+...+|+.. ...+++|+|+|||+| +.+..+.++++++||||||| +++.+|...+.
T Consensus 274 a~~l~~~~---g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~ 339 (666)
T 3o8b_A 274 GAYMSKAH---GIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIG 339 (666)
T ss_dssp HHHHHHHH---SCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHH
T ss_pred HHHHHHHh---CCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHH
Confidence 98776543 345666777754 456799999999998 45667788999999999997 55788888899
Q ss_pred HHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhhhhhhhHHHHhhcCC
Q 008207 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363 (574)
Q Consensus 284 ~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~ 363 (574)
.++..++......+++||||++..+. ...+....+.... ...+. . .. .... +. ...+
T Consensus 340 ~Il~~l~~~~~~llil~SAT~~~~i~-------~~~p~i~~v~~~~----~~~i~-~---~~--~~~~-----l~-~~~~ 396 (666)
T 3o8b_A 340 TVLDQAETAGARLVVLATATPPGSVT-------VPHPNIEEVALSN----TGEIP-F---YG--KAIP-----IE-AIRG 396 (666)
T ss_dssp HHHHHTTTTTCSEEEEEESSCTTCCC-------CCCTTEEEEECBS----CSSEE-E---TT--EEEC-----GG-GSSS
T ss_pred HHHHhhhhcCCceEEEECCCCCcccc-------cCCcceEEEeecc----cchhH-H---HH--hhhh-----hh-hccC
Confidence 99999987443347888999997321 1122221111100 00010 0 00 0000 11 1257
Q ss_pred CeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEE-------
Q 008207 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLII------- 432 (574)
Q Consensus 364 ~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI------- 432 (574)
+++||||++++.++.++..|. .+..+||++++.+ |.++..+||||||+++||||++ |++||
T Consensus 397 ~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~ 468 (666)
T 3o8b_A 397 GRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVT 468 (666)
T ss_dssp SEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEE
T ss_pred CcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccc
Confidence 899999999999999999986 5778999999875 4566679999999999999997 99988
Q ss_pred ---EeC-----------CCCCHhHHHHHhcccccCCCcceEEEEECCC-chH--H--HHHHHHhCCcceecCCCCHHH
Q 008207 433 ---QCE-----------PPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSS--V--SKIERESGVKFEHISAPQPAD 491 (574)
Q Consensus 433 ---~~d-----------~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~--~--~~i~~~~~~~~~~~~~~~~~~ 491 (574)
||| +|.+.++|+||+||||| |+.|. |+|+++. ... + ..+++..+..+.++..|..+.
T Consensus 469 ~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~~~~~~~l~~~~~ 544 (666)
T 3o8b_A 469 QTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAET 544 (666)
T ss_dssp EEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHHHHHTSCCCHHHH
T ss_pred cccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcCCcccccCCchHH
Confidence 677 89999999999999999 89999 9999987 222 3 788888887888877776543
No 43
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1e-41 Score=360.06 Aligned_cols=285 Identities=17% Similarity=0.156 Sum_probs=211.0
Q ss_pred CCCCCcHHHHHHHHHHhcCCcE-EEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHH
Q 008207 128 GIESLFPIQAMTFDMVLDGSDL-VGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (574)
Q Consensus 128 g~~~~~~~Q~~~i~~il~~~dv-i~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (574)
|+.+|+|+|+ +||.++.++++ +++||||||||++|++|++..+... ++++||++|||+||.|+++.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~------------~~~~lvl~Ptr~La~Q~~~~ 67 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR------------RLRTLILAPTRVVAAEMEEA 67 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT------------TCCEEEEESSHHHHHHHHHH
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc------------CCcEEEECCCHHHHHHHHHH
Confidence 7889999985 79999999887 9999999999999999999876542 24699999999999999998
Q ss_pred HHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHH
Q 008207 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286 (574)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il 286 (574)
+. ++.+....+.... ....+..|.++|++.+.+++.+. ..+.++++||+||||++ +.++...+..+.
T Consensus 68 l~------g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~ 134 (451)
T 2jlq_A 68 LR------GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYIS 134 (451)
T ss_dssp TT------TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHH
T ss_pred hc------Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHH
Confidence 74 2333222221110 12345689999999999888765 45889999999999987 443333333333
Q ss_pred HhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhhhhhhhHHHHhhcCCCeE
Q 008207 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366 (574)
Q Consensus 287 ~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 366 (574)
.... .+++|+++||||+|..+..+ +. ..+..+...... + ......+...+.. .++++
T Consensus 135 ~~~~-~~~~~~i~~SAT~~~~~~~~---~~-~~~~~~~~~~~~---------------p-~~~~~~~~~~l~~--~~~~~ 191 (451)
T 2jlq_A 135 TRVE-MGEAAAIFMTATPPGSTDPF---PQ-SNSPIEDIEREI---------------P-ERSWNTGFDWITD--YQGKT 191 (451)
T ss_dssp HHHH-TTSCEEEEECSSCTTCCCSS---CC-CSSCEEEEECCC---------------C-SSCCSSSCHHHHH--CCSCE
T ss_pred Hhhc-CCCceEEEEccCCCccchhh---hc-CCCceEecCccC---------------C-chhhHHHHHHHHh--CCCCE
Confidence 2221 23689999999998744321 22 233333322100 0 0001112233332 35799
Q ss_pred EEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEeC-------
Q 008207 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCE------- 435 (574)
Q Consensus 367 lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d------- 435 (574)
||||+++..++.++..|. .+..+||++ +..+++.|++|+.+|||||+++++|||+|+ ++|||||
T Consensus 192 lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~ 266 (451)
T 2jlq_A 192 VWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVI 266 (451)
T ss_dssp EEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEE
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccc
Confidence 999999999999999997 455677754 467999999999999999999999999999 9999999
Q ss_pred -------------CCCCHhHHHHHhcccccCCC-cceEEEEECCC
Q 008207 436 -------------PPRDVEAYIHRSGRTGRAGN-TGVAVMLYDPR 466 (574)
Q Consensus 436 -------------~p~s~~~yiqr~GR~gR~g~-~G~~i~l~~~~ 466 (574)
.|.+..+|+||+|||||.|. .|.|++|+...
T Consensus 267 d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~ 311 (451)
T 2jlq_A 267 LTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDP 311 (451)
T ss_dssp ECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred cccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCCc
Confidence 99999999999999999998 89998887543
No 44
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=7.7e-41 Score=360.45 Aligned_cols=311 Identities=16% Similarity=0.164 Sum_probs=232.1
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHH
Q 008207 129 IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (574)
Q Consensus 129 ~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~ 208 (574)
...|+|+|.++++.++.+++++++++||+|||++|++|++..+.... .++|||+||++|+.|+++++.
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~------------~~vlvl~P~~~L~~Q~~~~~~ 178 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE------------GKILIIVPTTALTTQMADDFV 178 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCS------------SEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCC------------CeEEEEECcHHHHHHHHHHHH
Confidence 44899999999999999999999999999999999999988775321 269999999999999999999
Q ss_pred HhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHh
Q 008207 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (574)
Q Consensus 209 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~ 288 (574)
.++...+..+..++|+.+...+ +...++|+|+||+.|... ....+.++++||+||||++.. ..+..++..
T Consensus 179 ~~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~ 248 (510)
T 2oca_A 179 DYRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISG 248 (510)
T ss_dssp HTTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGG
T ss_pred HhhcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHh
Confidence 9977777889999998776544 556799999999987543 334577899999999999864 557777777
Q ss_pred ccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecC----cccccccceeEEEEeCCc------------------
Q 008207 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN----EKMKASTNVRHIVLPCSS------------------ 346 (574)
Q Consensus 289 l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~i~~~~~~~~~------------------ 346 (574)
++. ..++++||||++.....+........+..+.+... ........+....+..+.
T Consensus 249 ~~~--~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (510)
T 2oca_A 249 LNN--CMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKII 326 (510)
T ss_dssp CTT--CCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHH
T ss_pred ccc--CcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHH
Confidence 755 57999999999765422211110012222111111 001111112222222111
Q ss_pred ---hhhhhhhhHHHHhh-cCCC-eEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEe-
Q 008207 347 ---SARSQVIPDIIRCY-SSGG-RTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVAT- 416 (574)
Q Consensus 347 ---~~~~~~l~~ll~~~-~~~~-~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT- 416 (574)
..+...+..++... ..++ ++|||++ ...++.++..|. .+..+||++++.+|..+++.|++|+.+|||||
T Consensus 327 ~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~ 405 (510)
T 2oca_A 327 TGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASY 405 (510)
T ss_dssp HTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEH
T ss_pred hccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEc
Confidence 12223344444332 2334 4556655 888888999886 56789999999999999999999999999999
Q ss_pred ccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEEC
Q 008207 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464 (574)
Q Consensus 417 d~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~ 464 (574)
+++++|+|+|++++||++++|+++..|+||+||+||.|+.|.++++++
T Consensus 406 ~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 406 GVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred ChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999999999999999999998775555554
No 45
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.9e-40 Score=369.50 Aligned_cols=329 Identities=18% Similarity=0.219 Sum_probs=243.5
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCC
Q 008207 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (574)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il-~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 185 (574)
....|+++++++.+.+.+...+ ..|+++|+++|+.++ .+++++++||||||||+ ++|++....... ..
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~--------~~ 138 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMP--------HL 138 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCG--------GG
T ss_pred CCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccc--------cC
Confidence 3467999999999999999988 789999999998877 55789999999999999 455552211100 01
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHH-hhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceE
Q 008207 186 RAPSVLVLLPTRELAKQVHEDFDV-YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (574)
Q Consensus 186 ~~~~~Lil~PtreLa~Qv~~~~~~-~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~ 264 (574)
.+.+++|++|+|+|+.|+++.+.. ++...+..+........ .....++|+|+|||++.+.+.... .+.++++
T Consensus 139 ~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~~-~l~~~~~ 211 (773)
T 2xau_A 139 ENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMEDH-DLSRYSC 211 (773)
T ss_dssp GTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHST-TCTTEEE
T ss_pred CCceEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhCc-cccCCCE
Confidence 245799999999999999987754 33233333332111111 123468999999999999887653 5899999
Q ss_pred EEecCchh-hhcCCc-HHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEE
Q 008207 265 RVLDEADE-MLRMGF-VEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (574)
Q Consensus 265 lVlDEah~-~l~~~~-~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 342 (574)
|||||+|. +++..+ ...+..+....+ ..|+++||||++. ..+ ..++ .....+.+.+.. ..+.+.+.
T Consensus 212 lIlDEah~R~ld~d~~~~~l~~l~~~~~---~~~iIl~SAT~~~--~~l-~~~~-~~~~vi~v~gr~-----~pv~~~~~ 279 (773)
T 2xau_A 212 IILDEAHERTLATDILMGLLKQVVKRRP---DLKIIIMSATLDA--EKF-QRYF-NDAPLLAVPGRT-----YPVELYYT 279 (773)
T ss_dssp EEECSGGGCCHHHHHHHHHHHHHHHHCT---TCEEEEEESCSCC--HHH-HHHT-TSCCEEECCCCC-----CCEEEECC
T ss_pred EEecCccccccchHHHHHHHHHHHHhCC---CceEEEEeccccH--HHH-HHHh-cCCCcccccCcc-----cceEEEEe
Confidence 99999996 555332 233344443332 5799999999975 233 4455 344455443322 34566666
Q ss_pred eCCchhhhh-hhhHHHHh--hcCCCeEEEEecChHHHHHHHHhCC---------------CCccccccCCHHHHHHHHHH
Q 008207 343 PCSSSARSQ-VIPDIIRC--YSSGGRTIIFTETKESASQLADLLP---------------GARALHGDIQQSQREVTLAG 404 (574)
Q Consensus 343 ~~~~~~~~~-~l~~ll~~--~~~~~~~lVF~~t~~~~~~l~~~l~---------------~~~~lh~~~~~~~r~~~~~~ 404 (574)
......... .+..++.. ...++++||||+++..++.++..|. .+..+||+|++.+|.++++.
T Consensus 280 ~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~ 359 (773)
T 2xau_A 280 PEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEP 359 (773)
T ss_dssp SSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSC
T ss_pred cCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhh
Confidence 555443332 22233322 2357899999999999999988774 26789999999999999999
Q ss_pred Hh-----CCCccEEEEeccccccCCCCCCcEEEEeCC------------------CCCHhHHHHHhcccccCCCcceEEE
Q 008207 405 FR-----SGKFMTLVATNVAARGLDINDVQLIIQCEP------------------PRDVEAYIHRSGRTGRAGNTGVAVM 461 (574)
Q Consensus 405 F~-----~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~------------------p~s~~~yiqr~GR~gR~g~~G~~i~ 461 (574)
|+ +|..+|||||+++++|||||+|++||++++ |.|..+|+||+|||||. .+|.||+
T Consensus 360 f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~ 438 (773)
T 2xau_A 360 APESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFR 438 (773)
T ss_dssp CCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEE
T ss_pred cccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEE
Confidence 99 999999999999999999999999999888 89999999999999999 7999999
Q ss_pred EECCC
Q 008207 462 LYDPR 466 (574)
Q Consensus 462 l~~~~ 466 (574)
|+++.
T Consensus 439 l~~~~ 443 (773)
T 2xau_A 439 LYTEE 443 (773)
T ss_dssp SSCHH
T ss_pred EecHH
Confidence 99865
No 46
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=2.4e-40 Score=353.06 Aligned_cols=295 Identities=22% Similarity=0.265 Sum_probs=224.8
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHH
Q 008207 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (574)
..|+|+|.++++.++.+++++++++||+|||++|+.++... . .++|||+|+++|+.||.+++..
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---~-------------~~~Lvl~P~~~L~~Q~~~~~~~ 155 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---S-------------TPTLIVVPTLALAEQWKERLGI 155 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---C-------------SCEEEEESSHHHHHHHHHHGGG
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---C-------------CCEEEEECCHHHHHHHHHHHHh
Confidence 37999999999999999999999999999999999998764 1 1499999999999999999987
Q ss_pred hhCCCCce-EEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHh
Q 008207 210 YGGAVGLT-SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (574)
Q Consensus 210 ~~~~~~~~-~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~ 288 (574)
| ++. +..++|+... ..+|+|+||+++...+.. ...++++||+||||++.+.+|.. ++..
T Consensus 156 ~----~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~----~~~~ 215 (472)
T 2fwr_A 156 F----GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQM 215 (472)
T ss_dssp G----CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHH----HHHT
T ss_pred C----CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHH----HHHh
Confidence 4 577 8888887643 489999999999877652 12458999999999998877654 4555
Q ss_pred ccCccCceEEEEeccCch-------------------hHHHHHHHhcccCCeE--EEEecCccc----------------
Q 008207 289 VEDANKVQTLLFSATLPS-------------------WVKHISTKFLKSDKKT--IDLVGNEKM---------------- 331 (574)
Q Consensus 289 l~~~~~~q~ll~SAT~~~-------------------~~~~~~~~~~~~~~~~--i~~~~~~~~---------------- 331 (574)
++ ..++++||||+.. ....+...++ ..+.. +.+......
T Consensus 216 ~~---~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 291 (472)
T 2fwr_A 216 SI---APFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHL-AKYTIKRIFVPLAEDERVEYEKREKVYKQFLR 291 (472)
T ss_dssp CC---CSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCC-CSEEECCEEECCCHHHHHHTTTTTHHHHSCSS
T ss_pred cC---CCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcC-CCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHH
Confidence 54 4689999999872 1222322222 11111 111100000
Q ss_pred ------ccccceeEEE---------------------EeCCchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC
Q 008207 332 ------KASTNVRHIV---------------------LPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP 384 (574)
Q Consensus 332 ------~~~~~i~~~~---------------------~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~ 384 (574)
.....+.+++ +.+....+...+..++... .++++||||++...++.++..|.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~k~lvF~~~~~~~~~l~~~l~ 370 (472)
T 2fwr_A 292 ARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERH-RKDKIIIFTRHNELVYRISKVFL 370 (472)
T ss_dssp SCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHT-SSSCBCCBCSCHHHHHHHHHHTT
T ss_pred hcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHhC
Confidence 0000000000 0112334556667777663 67899999999999999999994
Q ss_pred CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCc-c--eEEE
Q 008207 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNT-G--VAVM 461 (574)
Q Consensus 385 ~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~-G--~~i~ 461 (574)
+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+. + .+|.
T Consensus 371 -~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~ 449 (472)
T 2fwr_A 371 -IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYE 449 (472)
T ss_dssp -CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEE
T ss_pred -cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEE
Confidence 77899999999999999999999999999999999999999999999999999999999999999999854 3 4566
Q ss_pred EECCC
Q 008207 462 LYDPR 466 (574)
Q Consensus 462 l~~~~ 466 (574)
|++..
T Consensus 450 lv~~~ 454 (472)
T 2fwr_A 450 LISRG 454 (472)
T ss_dssp EEECS
T ss_pred EEeCC
Confidence 77765
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=6.9e-42 Score=374.17 Aligned_cols=302 Identities=16% Similarity=0.175 Sum_probs=210.6
Q ss_pred HHHHCCCC-----CCcHHHH-----HHHHHHh------cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCC
Q 008207 123 KLKSKGIE-----SLFPIQA-----MTFDMVL------DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (574)
Q Consensus 123 ~l~~~g~~-----~~~~~Q~-----~~i~~il------~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (574)
+|..+||. .|+|+|+ ++||.++ .|+|++++|+||||||++|++|+++.+...
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~------------ 269 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK------------ 269 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT------------
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC------------
Confidence 44556777 9999999 9999988 899999999999999999999999886542
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEE
Q 008207 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (574)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lV 266 (574)
++++||++|||+||.|+++.+..+. +. ...+... .....+.-+-+.+.+.+...+... ..+.++++||
T Consensus 270 ~~~~lilaPTr~La~Q~~~~l~~~~----i~--~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvV 337 (673)
T 2wv9_A 270 RLRTAVLAPTRVVAAEMAEALRGLP----VR--YLTPAVQ-----REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFV 337 (673)
T ss_dssp TCCEEEEESSHHHHHHHHHHTTTSC----CE--ECCC--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEE
T ss_pred CCcEEEEccHHHHHHHHHHHHhcCC----ee--eeccccc-----ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEE
Confidence 2469999999999999998886432 21 1111000 000011122333333333333332 3689999999
Q ss_pred ecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCc
Q 008207 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (574)
Q Consensus 267 lDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 346 (574)
|||||++ +..+...+..+...++. ..+|+++||||++..+..+ .........+. .....
T Consensus 338 iDEaH~~-~~~~~~~~~~l~~~~~~-~~~~vl~~SAT~~~~i~~~----~~~~~~i~~v~---------------~~~~~ 396 (673)
T 2wv9_A 338 MDEAHFT-DPASIAARGYIATRVEA-GEAAAIFMTATPPGTSDPF----PDTNSPVHDVS---------------SEIPD 396 (673)
T ss_dssp EESTTCC-CHHHHHHHHHHHHHHHT-TSCEEEEECSSCTTCCCSS----CCCSSCEEEEE---------------CCCCS
T ss_pred EeCCccc-CccHHHHHHHHHHhccc-cCCcEEEEcCCCChhhhhh----cccCCceEEEe---------------eecCH
Confidence 9999998 22222333334443331 3689999999998754321 11111111111 11112
Q ss_pred hhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEecccccc
Q 008207 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (574)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~G 422 (574)
......+..+.. .++++||||++++.++.++..|. .+..+|| .+|..+++.|++|+.+|||||+++++|
T Consensus 397 ~~~~~~l~~l~~---~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg----~eR~~v~~~F~~g~~~VLVaTdv~e~G 469 (673)
T 2wv9_A 397 RAWSSGFEWITD---YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNR----KSYDTEYPKCKNGDWDFVITTDISEMG 469 (673)
T ss_dssp SCCSSCCHHHHS---CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECS----SSHHHHGGGGGTCCCSEEEECGGGGTT
T ss_pred HHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeCh----HHHHHHHHHHHCCCceEEEECchhhcc
Confidence 222233333332 57899999999999999999986 5678999 389999999999999999999999999
Q ss_pred CCCCCCcEEEE--------------------eCCCCCHhHHHHHhcccccC-CCcceEEEEE---CCC-chHHHHHHHHh
Q 008207 423 LDINDVQLIIQ--------------------CEPPRDVEAYIHRSGRTGRA-GNTGVAVMLY---DPR-KSSVSKIERES 477 (574)
Q Consensus 423 ldi~~v~~VI~--------------------~d~p~s~~~yiqr~GR~gR~-g~~G~~i~l~---~~~-~~~~~~i~~~~ 477 (574)
||+| +++||| ||+|.+.++|+||+||+||. |+.|.|++|+ ++. ...+..++...
T Consensus 470 IDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 470 ANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp CCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred eeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 9999 999998 67999999999999999999 7899999997 344 55677777654
No 48
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.1e-41 Score=358.25 Aligned_cols=275 Identities=20% Similarity=0.213 Sum_probs=194.8
Q ss_pred HHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEE
Q 008207 142 MVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCL 221 (574)
Q Consensus 142 ~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~ 221 (574)
++++|+|++++||||||||++|++|+++.+... ++++||++||++||.|+++.+..+ .+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~------------~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~ 65 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR------------RLRTLVLAPTRVVLSEMKEAFHGL------DVKFH 65 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT------------TCCEEEEESSHHHHHHHHHHTTTS------CEEEE
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc------------CCeEEEEcchHHHHHHHHHHHhcC------CeEEe
Confidence 467899999999999999999999999877642 246999999999999999988633 22221
Q ss_pred eCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCc--------cCCCceEEEecCchhhhcCCcHHHHHHHHHhccCcc
Q 008207 222 YGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI--------DLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293 (574)
Q Consensus 222 ~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~--------~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~ 293 (574)
.+.. -.|+||+++++++.++.+ .+.++++||+||||++ +.++...+..+...++ ..
T Consensus 66 ~~~~--------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~-~~ 129 (440)
T 1yks_A 66 TQAF--------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRAR-AN 129 (440)
T ss_dssp SSCC--------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHH-TT
T ss_pred cccc--------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhc-cC
Confidence 1111 038888888766554332 3889999999999998 4444333333333333 23
Q ss_pred CceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhhhhhhhHHHHhhcCCCeEEEEecCh
Q 008207 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETK 373 (574)
Q Consensus 294 ~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~ 373 (574)
++|+++||||+++.+..+.. .... +......++.......+..+.. .++++||||+++
T Consensus 130 ~~~~l~~SAT~~~~~~~~~~----~~~~---------------~~~~~~~~~~~~~~~~~~~l~~---~~~~~lVF~~s~ 187 (440)
T 1yks_A 130 ESATILMTATPPGTSDEFPH----SNGE---------------IEDVQTDIPSEPWNTGHDWILA---DKRPTAWFLPSI 187 (440)
T ss_dssp SCEEEEECSSCTTCCCSSCC----CSSC---------------EEEEECCCCSSCCSSSCHHHHH---CCSCEEEECSCH
T ss_pred CceEEEEeCCCCchhhhhhh----cCCC---------------eeEeeeccChHHHHHHHHHHHh---cCCCEEEEeCCH
Confidence 68999999999875432211 1111 1111111222222333333333 367999999999
Q ss_pred HHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEE----------------
Q 008207 374 ESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ---------------- 433 (574)
Q Consensus 374 ~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~---------------- 433 (574)
+.++.++..|. .+..+|| .+|..+++.|++|+.+|||||+++++|||+| +++||+
T Consensus 188 ~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~ 262 (440)
T 1yks_A 188 RAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKV 262 (440)
T ss_dssp HHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEE
T ss_pred HHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccce
Confidence 99999999986 6778999 4688999999999999999999999999999 999996
Q ss_pred ---eCCCCCHhHHHHHhcccccC-CCcceEEEEE---CCC-chHHHHHHHHh
Q 008207 434 ---CEPPRDVEAYIHRSGRTGRA-GNTGVAVMLY---DPR-KSSVSKIERES 477 (574)
Q Consensus 434 ---~d~p~s~~~yiqr~GR~gR~-g~~G~~i~l~---~~~-~~~~~~i~~~~ 477 (574)
|+.|.+..+|+||+||+||. |+.|.|++|+ ++. ...+..++..+
T Consensus 263 vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 263 AIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred eeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 89999999999999999998 6899999997 444 56677777664
No 49
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=8.8e-39 Score=319.02 Aligned_cols=204 Identities=29% Similarity=0.392 Sum_probs=181.2
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCC
Q 008207 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (574)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~--~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~ 184 (574)
....|++++|++.++++|..+||..|||+|.++||.++.| +|++++||||||||++|++|+++.+...
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~---------- 159 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA---------- 159 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT----------
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc----------
Confidence 3467999999999999999999999999999999999987 9999999999999999999999988653
Q ss_pred CCCCeEEEEeCcHHHHHHHHHHHHHhhCCC-CceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhc-CCccCCCc
Q 008207 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLSSL 262 (574)
Q Consensus 185 ~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~-~~~~l~~~ 262 (574)
..++++|||+|||+||.|+++.+..++... ++.+...+|+...... ...+++|+|+|||+|++++.+ +.+.++++
T Consensus 160 ~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l 236 (300)
T 3fmo_B 160 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKI 236 (300)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCCGGGC
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCChhhc
Confidence 245689999999999999999999988764 6889999998875432 245689999999999999976 56788999
Q ss_pred eEEEecCchhhhc-CCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEe
Q 008207 263 KFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLV 326 (574)
Q Consensus 263 ~~lVlDEah~~l~-~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~ 326 (574)
++|||||||+|++ .+|...+..|+..++. .+|+++||||++..+..+++.++ .++..|.+.
T Consensus 237 ~~lVlDEad~l~~~~~~~~~~~~i~~~~~~--~~q~i~~SAT~~~~v~~~a~~~l-~~p~~i~~~ 298 (300)
T 3fmo_B 237 KVFVLDEADVMIATQGHQDQSIRIQRMLPR--NCQMLLFSATFEDSVWKFAQKVV-PDPNVIKLK 298 (300)
T ss_dssp SEEEETTHHHHHHSTTHHHHHHHHHTTSCT--TCEEEEEESCCCHHHHHHHHHHS-SSCEEEEEC
T ss_pred eEEEEeCHHHHhhccCcHHHHHHHHHhCCC--CCEEEEEeccCCHHHHHHHHHHC-CCCeEEEec
Confidence 9999999999998 7899999999999876 78999999999999999999999 577777653
No 50
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1e-37 Score=302.43 Aligned_cols=214 Identities=36% Similarity=0.578 Sum_probs=194.9
Q ss_pred CCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCC
Q 008207 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (574)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 185 (574)
.....|+++++++.+++.|.+.||..|+|+|.++++.++.|+|++++||||||||++|++|++..+...... ...
T Consensus 26 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~-----~~~ 100 (242)
T 3fe2_A 26 KPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFL-----ERG 100 (242)
T ss_dssp CCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCC-----CTT
T ss_pred CccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcccc-----ccC
Confidence 344678999999999999999999999999999999999999999999999999999999999998764321 123
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEE
Q 008207 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (574)
Q Consensus 186 ~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~l 265 (574)
.++++||++|||+|+.|+++.+..++...++.+..++||.+...+...+..+++|+|+||++|.+++.++...+.++++|
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~l 180 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYL 180 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEE
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEE
Confidence 56789999999999999999999998888999999999999988888888889999999999999999988899999999
Q ss_pred EecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEec
Q 008207 266 VLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVG 327 (574)
Q Consensus 266 VlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~ 327 (574)
|+||||+|++++|...+..++..++. .+|+++||||+|..+..+++.++ .++..|.+..
T Consensus 181 ViDEah~l~~~~~~~~~~~i~~~~~~--~~q~~~~SAT~~~~~~~~~~~~l-~~~~~i~~~~ 239 (242)
T 3fe2_A 181 VLDEADRMLDMGFEPQIRKIVDQIRP--DRQTLMWSATWPKEVRQLAEDFL-KDYIHINIGA 239 (242)
T ss_dssp EETTHHHHHHTTCHHHHHHHHTTSCS--SCEEEEEESCCCHHHHHHHHHHC-SSCEEEEECC
T ss_pred EEeCHHHHhhhCcHHHHHHHHHhCCc--cceEEEEEeecCHHHHHHHHHHC-CCCEEEEecC
Confidence 99999999999999999999999976 78999999999999999999999 5777776643
No 51
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=4.6e-39 Score=340.27 Aligned_cols=269 Identities=18% Similarity=0.215 Sum_probs=193.0
Q ss_pred HHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEE
Q 008207 140 FDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC 219 (574)
Q Consensus 140 i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~ 219 (574)
...+..+++++++||||||||++|++|+++.+... ++++||++|||+||.|+++.+. ++.+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~------------~~~~lvl~Ptr~La~Q~~~~l~------g~~v~ 76 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ------------RLRTAVLAPTRVVAAEMAEALR------GLPVR 76 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT------------TCCEEEEECSHHHHHHHHHHTT------TSCEE
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC------------CCcEEEECchHHHHHHHHHHhc------CceEe
Confidence 44566889999999999999999999999887632 2469999999999999999885 23333
Q ss_pred EEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchh-----hhcCCcHHHHHHHHHhccCccC
Q 008207 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADE-----MLRMGFVEDVELILGKVEDANK 294 (574)
Q Consensus 220 ~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~-----~l~~~~~~~~~~il~~l~~~~~ 294 (574)
...+.... .-..+.-+.++|.+.+...+... ..+.++++|||||||+ ++..+|...+. . .+.
T Consensus 77 ~~~~~~~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~------~-~~~ 143 (459)
T 2z83_A 77 YQTSAVQR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV------E-LGE 143 (459)
T ss_dssp ECC-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH------H-TTS
T ss_pred EEeccccc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh------c-cCC
Confidence 22221110 11234568889999988777654 4688999999999998 45444433321 1 136
Q ss_pred ceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhhhhhhhHHHHhhcCCCeEEEEecChH
Q 008207 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKE 374 (574)
Q Consensus 295 ~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~ 374 (574)
+|+++||||++..+..+ .........+.. ..+.. ....+..++.. .++++||||+++.
T Consensus 144 ~~~il~SAT~~~~~~~~----~~~~~pi~~~~~---------------~~~~~-~~~~~~~~l~~--~~~~~LVF~~s~~ 201 (459)
T 2z83_A 144 AAAIFMTATPPGTTDPF----PDSNAPIHDLQD---------------EIPDR-AWSSGYEWITE--YAGKTVWFVASVK 201 (459)
T ss_dssp CEEEEECSSCTTCCCSS----CCCSSCEEEEEC---------------CCCSS-CCSSCCHHHHH--CCSCEEEECSCHH
T ss_pred ccEEEEEcCCCcchhhh----ccCCCCeEEecc---------------cCCcc-hhHHHHHHHHh--cCCCEEEEeCChH
Confidence 89999999999754221 111111111110 01111 11122233333 3679999999999
Q ss_pred HHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEE-----------------
Q 008207 375 SASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----------------- 433 (574)
Q Consensus 375 ~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~----------------- 433 (574)
.++.++..|. .+..+||+ +|..+++.|++|+.+|||||+++++|||+|+ ++||+
T Consensus 202 ~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~ 276 (459)
T 2z83_A 202 MGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRV 276 (459)
T ss_dssp HHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEE
T ss_pred HHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccccccccccccccc
Confidence 9999999986 56677874 7888999999999999999999999999999 99999
Q ss_pred ---eCCCCCHhHHHHHhcccccCCC-cceEEEEECCC
Q 008207 434 ---CEPPRDVEAYIHRSGRTGRAGN-TGVAVMLYDPR 466 (574)
Q Consensus 434 ---~d~p~s~~~yiqr~GR~gR~g~-~G~~i~l~~~~ 466 (574)
|++|.+..+|+||+|||||.|. .|.|++|+.+.
T Consensus 277 ~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 277 ILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp EECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 7799999999999999999997 99999999874
No 52
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=1e-37 Score=340.02 Aligned_cols=297 Identities=14% Similarity=0.102 Sum_probs=212.8
Q ss_pred HHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCC
Q 008207 136 QAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG 215 (574)
Q Consensus 136 Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~ 215 (574)
|.......+.|++++++||||||||+ ++++.+.... +++|++|||+||.|+++.+... +
T Consensus 145 ~~~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~~-------------~gl~l~PtR~LA~Qi~~~l~~~----g 203 (677)
T 3rc3_A 145 NWYPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSAK-------------SGVYCGPLKLLAHEIFEKSNAA----G 203 (677)
T ss_dssp GGCHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHSS-------------SEEEEESSHHHHHHHHHHHHHT----T
T ss_pred hhCHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhcC-------------CeEEEeCHHHHHHHHHHHHHhc----C
Confidence 33344456789999999999999998 3444443321 2699999999999999999875 5
Q ss_pred ceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCc
Q 008207 216 LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295 (574)
Q Consensus 216 ~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~ 295 (574)
+.+..++|+..... .......+++++|++.+. ....+++|||||||+|++.+|...+..++..++. ...
T Consensus 204 ~~v~lltG~~~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~-~~i 272 (677)
T 3rc3_A 204 VPCDLVTGEERVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCA-EEV 272 (677)
T ss_dssp CCEEEECSSCEECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCE-EEE
T ss_pred CcEEEEECCeeEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCc-cce
Confidence 77888888865410 000112456666654431 2467899999999999999999999999988873 368
Q ss_pred eEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhhhhhhhHHHHhhcCCCeEEEEecChHH
Q 008207 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKES 375 (574)
Q Consensus 296 q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~ 375 (574)
+++++|||.+ .+..+..... ....+... . ..... .+ ....+.. +... ....+|||++++.
T Consensus 273 ~il~~SAT~~-~i~~l~~~~~--~~~~v~~~--~---r~~~l---~~------~~~~l~~-l~~~--~~g~iIf~~s~~~ 332 (677)
T 3rc3_A 273 HLCGEPAAID-LVMELMYTTG--EEVEVRDY--K---RLTPI---SV------LDHALES-LDNL--RPGDCIVCFSKND 332 (677)
T ss_dssp EEEECGGGHH-HHHHHHHHHT--CCEEEEEC--C---CSSCE---EE------CSSCCCS-GGGC--CTTEEEECSSHHH
T ss_pred EEEeccchHH-HHHHHHHhcC--CceEEEEe--e---ecchH---HH------HHHHHHH-HHhc--CCCCEEEEcCHHH
Confidence 9999999954 3444444332 22222111 0 00000 00 0011111 1111 2345889999999
Q ss_pred HHHHHHhCC----CCccccccCCHHHHHHHHHHHhC--CCccEEEEeccccccCCCCCCcEEEEeCC-------------
Q 008207 376 ASQLADLLP----GARALHGDIQQSQREVTLAGFRS--GKFMTLVATNVAARGLDINDVQLIIQCEP------------- 436 (574)
Q Consensus 376 ~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~--g~~~vLvaTd~~~~Gldi~~v~~VI~~d~------------- 436 (574)
++.++..|. .+.++||+|++.+|..+++.|++ |.++|||||+++++|||+ ++++||++|+
T Consensus 333 ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~ 411 (677)
T 3rc3_A 333 IYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGEREL 411 (677)
T ss_dssp HHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------
T ss_pred HHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCcccc
Confidence 999999886 78899999999999999999999 899999999999999999 9999999999
Q ss_pred -CCCHhHHHHHhcccccCCCc---ceEEEEECCCchHHHHHHHHhCCcceecC
Q 008207 437 -PRDVEAYIHRSGRTGRAGNT---GVAVMLYDPRKSSVSKIERESGVKFEHIS 485 (574)
Q Consensus 437 -p~s~~~yiqr~GR~gR~g~~---G~~i~l~~~~~~~~~~i~~~~~~~~~~~~ 485 (574)
|.+..+|+||+|||||.|.. |.|++++......+.++.......+....
T Consensus 412 ~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~~~~~~~~~~~i~~~~ 464 (677)
T 3rc3_A 412 EPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAG 464 (677)
T ss_dssp CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHHHHHHHSCCCCCCCEE
T ss_pred ccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHHHHHHHHhcCcchhhhcc
Confidence 88999999999999999964 77777766544456666665555555533
No 53
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.5e-36 Score=291.48 Aligned_cols=210 Identities=35% Similarity=0.561 Sum_probs=179.2
Q ss_pred CCCCcccc-cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCC
Q 008207 106 EHPNAVSR-FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (574)
Q Consensus 106 ~~~~~~~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~ 184 (574)
.....|.+ +++++.++++|.+.||..|+|+|.++++.+++|+|++++||||||||++|++|++..+....... ..
T Consensus 16 ~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~----~~ 91 (228)
T 3iuy_A 16 KPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR----EQ 91 (228)
T ss_dssp CCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------------
T ss_pred CChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh----hc
Confidence 34456787 89999999999999999999999999999999999999999999999999999999886532211 11
Q ss_pred CCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceE
Q 008207 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (574)
Q Consensus 185 ~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~ 264 (574)
..++++||++|||+|+.|+++.+..+. ..++.+..++||.....+...+..+++|+|+||++|.+++.++.+.++++++
T Consensus 92 ~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~ 170 (228)
T 3iuy_A 92 RNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITY 170 (228)
T ss_dssp -CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCE
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceE
Confidence 356789999999999999999999886 5678999999999988888888888999999999999999988888999999
Q ss_pred EEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEE
Q 008207 265 RVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTI 323 (574)
Q Consensus 265 lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i 323 (574)
||+||||++++++|...+..++..++. .+|+++||||+|+.+..+...++ .++..+
T Consensus 171 lViDEah~~~~~~~~~~~~~i~~~~~~--~~~~l~~SAT~~~~~~~~~~~~l-~~p~~i 226 (228)
T 3iuy_A 171 LVIDEADKMLDMEFEPQIRKILLDVRP--DRQTVMTSATWPDTVRQLALSYL-KDPMIV 226 (228)
T ss_dssp EEECCHHHHHHTTCHHHHHHHHHHSCS--SCEEEEEESCCCHHHHHHHHTTC-SSCEEE
T ss_pred EEEECHHHHhccchHHHHHHHHHhCCc--CCeEEEEEeeCCHHHHHHHHHHC-CCCEEE
Confidence 999999999999999999999999976 78999999999999999999998 455544
No 54
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=1.2e-36 Score=297.05 Aligned_cols=229 Identities=31% Similarity=0.494 Sum_probs=191.1
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCC
Q 008207 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (574)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (574)
....|+++++++.++++|..+||..|+|+|.++++.++.|+|++++||||||||++|++|+++.+........ ......
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~-~~~~~~ 99 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQ-RYSKTA 99 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC-------CCB
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccc-cccccC
Confidence 3456999999999999999999999999999999999999999999999999999999999999876532110 011234
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEE
Q 008207 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (574)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lV 266 (574)
++++||++|||+|+.|+++.+..++...++.+..++||.+...+...+..+++|+|+||++|.+++.++.+.+.++++||
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lV 179 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIV 179 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEE
Confidence 56899999999999999999999998888999999999998888888888899999999999999999888899999999
Q ss_pred ecCchhhhcCCcHHHHHHHHHhccCc--cCceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeE
Q 008207 267 LDEADEMLRMGFVEDVELILGKVEDA--NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRH 339 (574)
Q Consensus 267 lDEah~~l~~~~~~~~~~il~~l~~~--~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~ 339 (574)
+||||+|++++|...+..++..+... ..+|+++||||++..+..+.+.++ .++..+.+.... ....+++|
T Consensus 180 iDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l-~~~~~i~~~~~~--~~~~~i~q 251 (253)
T 1wrb_A 180 LDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFL-YNYIFMTVGRVG--STSDSIKQ 251 (253)
T ss_dssp EETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHC-SSCEEEEEC-------------
T ss_pred EeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHc-CCCEEEEECCCC--CCcCCcee
Confidence 99999999999999999999865332 267999999999999999999999 467666654332 33344444
No 55
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=3.1e-36 Score=292.85 Aligned_cols=203 Identities=36% Similarity=0.557 Sum_probs=186.1
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 008207 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (574)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (574)
..|+++++++.+.++|..+||..|+|+|.++++.++.|+|++++||||||||++|++|+++.+.... .++
T Consensus 43 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~----------~~~ 112 (249)
T 3ber_A 43 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP----------QRL 112 (249)
T ss_dssp CCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC----------CSS
T ss_pred CCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC----------CCc
Confidence 5699999999999999999999999999999999999999999999999999999999999886542 345
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhc-CCccCCCceEEEe
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLSSLKFRVL 267 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~-~~~~l~~~~~lVl 267 (574)
++||++|||+|+.|+++.++.++...++.+..++||.....+...+..+++|+|+||++|.+++.+ +.+.+.++++||+
T Consensus 113 ~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 113 FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 799999999999999999999988889999999999998888888888999999999999999886 5567899999999
Q ss_pred cCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEE
Q 008207 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324 (574)
Q Consensus 268 DEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~ 324 (574)
||||++++++|...+..++..++. .+|+++||||++..+..+.+.++ .++..+.
T Consensus 193 DEah~l~~~~~~~~l~~i~~~~~~--~~~~l~~SAT~~~~v~~~~~~~l-~~p~~i~ 246 (249)
T 3ber_A 193 DEADRILNMDFETEVDKILKVIPR--DRKTFLFSATMTKKVQKLQRAAL-KNPVKCA 246 (249)
T ss_dssp CSHHHHHHTTCHHHHHHHHHSSCS--SSEEEEEESSCCHHHHHHHHHHC-SSCEEEE
T ss_pred cChhhhhccChHHHHHHHHHhCCC--CCeEEEEeccCCHHHHHHHHHHC-CCCEEEE
Confidence 999999999999999999999876 68999999999999999999999 5666554
No 56
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=6.8e-36 Score=282.24 Aligned_cols=201 Identities=32% Similarity=0.465 Sum_probs=183.8
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 008207 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (574)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (574)
..|+++++++.+++.|.+.||..|+|+|.++++.++.|+|+++++|||||||++|++|++..+... ..++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~----------~~~~ 72 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK----------KDNI 72 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT----------SCSC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc----------CCCe
Confidence 469999999999999999999999999999999999999999999999999999999999887543 2345
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCCC-CceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEe
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVl 267 (574)
++||++||++|+.|+++.+..++... ++.+..++|+.....+...+..+++|+|+||++|.+++.++...+.++++||+
T Consensus 73 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 152 (206)
T 1vec_A 73 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVL 152 (206)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEE
Confidence 79999999999999999999988766 78999999999988888888888999999999999999988888999999999
Q ss_pred cCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeE
Q 008207 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKT 322 (574)
Q Consensus 268 DEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~ 322 (574)
||||++++.+|...+..++..++. ..|+++||||+|..+..+.+.++. ++..
T Consensus 153 DEah~~~~~~~~~~l~~i~~~~~~--~~~~l~~SAT~~~~~~~~~~~~l~-~p~~ 204 (206)
T 1vec_A 153 DEADKLLSQDFVQIMEDIILTLPK--NRQILLYSATFPLSVQKFMNSHLE-KPYE 204 (206)
T ss_dssp ETHHHHTSTTTHHHHHHHHHHSCT--TCEEEEEESCCCHHHHHHHHHHCS-SCEE
T ss_pred EChHHhHhhCcHHHHHHHHHhCCc--cceEEEEEeeCCHHHHHHHHHHcC-CCeE
Confidence 999999999999999999999976 689999999999999999999984 4443
No 57
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=5.6e-37 Score=335.84 Aligned_cols=315 Identities=15% Similarity=0.173 Sum_probs=191.0
Q ss_pred CCCcHHHHHHHHHHhc----C-CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHH
Q 008207 130 ESLFPIQAMTFDMVLD----G-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il~----~-~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (574)
..|+|+|.++++.++. + ++++++++||||||++++..+...+... +.. .......++|||+||++|+.|+.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~-~~~---~~~~~~~~vlil~P~~~L~~Q~~ 252 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSAR-WNR---TGDYRKPRILFLADRNVLVDDPK 252 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTT-CCS---SCSSSCCCEEEEEC---------
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcc-ccc---ccccCCCeEEEEeCCHHHHHHHH
Confidence 3799999999999875 4 6699999999999999655544444332 100 00124567999999999999999
Q ss_pred -HHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhc----CCccCCCceEEEecCchhhhcCCcH
Q 008207 205 -EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER----GNIDLSSLKFRVLDEADEMLRMGFV 279 (574)
Q Consensus 205 -~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~----~~~~l~~~~~lVlDEah~~l~~~~~ 279 (574)
+.+..++. .+..+.++ ....+.+|+|+||++|...+.. ..+....+++||+||||++...+ .
T Consensus 253 ~~~~~~~~~----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~ 319 (590)
T 3h1t_A 253 DKTFTPFGD----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-N 319 (590)
T ss_dssp --CCTTTCS----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC--------
T ss_pred HHHHHhcch----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-h
Confidence 77766543 33333332 2345689999999999887642 23456779999999999997543 3
Q ss_pred HHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcc-----------------cCCeEEEEecCccccc---------
Q 008207 280 EDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLK-----------------SDKKTIDLVGNEKMKA--------- 333 (574)
Q Consensus 280 ~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~-----------------~~~~~i~~~~~~~~~~--------- 333 (574)
..+..++..++. .++++||||+......-...++. .++..+.+........
T Consensus 320 ~~~~~il~~~~~---~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (590)
T 3h1t_A 320 SNWREILEYFEP---AFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVD 396 (590)
T ss_dssp --CHHHHHHSTT---SEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------
T ss_pred HHHHHHHHhCCc---ceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccc
Confidence 456677777763 58999999976433222222221 1111111111000000
Q ss_pred --ccceeEEEEeCCc-------hhhhh----hhhHHHHhhcCCCeEEEEecChHHHHHHHHhCCC------------Ccc
Q 008207 334 --STNVRHIVLPCSS-------SARSQ----VIPDIIRCYSSGGRTIIFTETKESASQLADLLPG------------ARA 388 (574)
Q Consensus 334 --~~~i~~~~~~~~~-------~~~~~----~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~------------~~~ 388 (574)
...+....+.... ..+.. .+..++.....++++||||+++..++.++..|.. +..
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~ 476 (590)
T 3h1t_A 397 RFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVAR 476 (590)
T ss_dssp ------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEE
T ss_pred ccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEE
Confidence 0000000000000 01111 2333344445668999999999999999998851 456
Q ss_pred ccccCCHHHHHHHHHHHhCCCcc---EEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCC--cceEEEEE
Q 008207 389 LHGDIQQSQREVTLAGFRSGKFM---TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN--TGVAVMLY 463 (574)
Q Consensus 389 lh~~~~~~~r~~~~~~F~~g~~~---vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~--~G~~i~l~ 463 (574)
+||+++. +|..+++.|++|+.+ |||||+++++|||+|+|++||++++|+++..|+||+||+||.|. .+..++++
T Consensus 477 i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~ 555 (590)
T 3h1t_A 477 VTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNII 555 (590)
T ss_dssp CSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEE
T ss_pred EeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEE
Confidence 8998764 799999999998766 88999999999999999999999999999999999999999875 33444444
Q ss_pred CC
Q 008207 464 DP 465 (574)
Q Consensus 464 ~~ 465 (574)
+-
T Consensus 556 D~ 557 (590)
T 3h1t_A 556 DY 557 (590)
T ss_dssp EC
T ss_pred ec
Confidence 43
No 58
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=2.1e-36 Score=288.55 Aligned_cols=204 Identities=32% Similarity=0.497 Sum_probs=184.6
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 008207 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (574)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (574)
..|+++++++.++++|.+.||..|+|+|.++++.+++|+|+++++|||||||++|++|+++.+... ..++
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~----------~~~~ 73 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE----------RAEV 73 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT----------SCSC
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC----------cCCc
Confidence 469999999999999999999999999999999999999999999999999999999999987643 2345
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCCC----CceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceE
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGAV----GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~----~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~ 264 (574)
++||++||++|+.|+++.+..++... ++.+..++||.+...+...+..+++|+|+||++|.+++.++.+.+.++++
T Consensus 74 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~ 153 (219)
T 1q0u_A 74 QAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHI 153 (219)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceE
Confidence 79999999999999999999988766 78899999999877666666678999999999999999988888999999
Q ss_pred EEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEE
Q 008207 265 RVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDL 325 (574)
Q Consensus 265 lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~ 325 (574)
||+||||++++++|...+..++..++. .+|+++||||+|..+..+.+.++ .++..+.+
T Consensus 154 lViDEah~~~~~~~~~~l~~i~~~~~~--~~~~l~~SAT~~~~~~~~~~~~~-~~p~~~~~ 211 (219)
T 1q0u_A 154 LVVDEADLMLDMGFITDVDQIAARMPK--DLQMLVFSATIPEKLKPFLKKYM-ENPTFVHV 211 (219)
T ss_dssp EEECSHHHHHHTTCHHHHHHHHHTSCT--TCEEEEEESCCCGGGHHHHHHHC-SSCEEEEC
T ss_pred EEEcCchHHhhhChHHHHHHHHHhCCc--ccEEEEEecCCCHHHHHHHHHHc-CCCeEEEe
Confidence 999999999999999999999999876 68999999999999999999999 56666654
No 59
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=6.3e-37 Score=321.28 Aligned_cols=267 Identities=16% Similarity=0.163 Sum_probs=189.8
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCC
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg 224 (574)
+|++++++||||||||++|++|+++.+... +.++||++||++||.|+++.+. ++.+....|+
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~------------g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~ 62 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK------------RLRTVILAPTRVVASEMYEALR------GEPIRYMTPA 62 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT------------TCCEEEEESSHHHHHHHHHHTT------TSCEEEC---
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC------------CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecC
Confidence 478999999999999999999999666432 2369999999999999988774 3455544444
Q ss_pred cchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccC
Q 008207 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304 (574)
Q Consensus 225 ~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~ 304 (574)
... .-..+.-+.+.|.+.+...+.. ...+.++++||+||||++ ..++......+..... ...+|+++||||+
T Consensus 63 ~~~-----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~-~~~~~~l~~SAT~ 134 (431)
T 2v6i_A 63 VQS-----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVS-MGDAGAIFMTATP 134 (431)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHH-TTSCEEEEEESSC
T ss_pred ccc-----cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhh-CCCCcEEEEeCCC
Confidence 221 1123456778899998777766 456899999999999987 4434444444444332 2368999999999
Q ss_pred chhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC
Q 008207 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP 384 (574)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~ 384 (574)
++.+..+ .......+.+. ...+.. ....+..++.. .++++||||++++.++.++..|.
T Consensus 135 ~~~~~~~----~~~~~~i~~~~---------------~~~~~~-~~~~~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~ 192 (431)
T 2v6i_A 135 PGTTEAF----PPSNSPIIDEE---------------TRIPDK-AWNSGYEWITE--FDGRTVWFVHSIKQGAEIGTCLQ 192 (431)
T ss_dssp TTCCCSS----CCCSSCCEEEE---------------CCCCSS-CCSSCCHHHHS--CSSCEEEECSSHHHHHHHHHHHH
T ss_pred Ccchhhh----cCCCCceeecc---------------ccCCHH-HHHHHHHHHHc--CCCCEEEEeCCHHHHHHHHHHHH
Confidence 8743211 11111111111 011111 12222333433 36799999999999999999986
Q ss_pred ----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcE-----------------EEEeCCCCCHhHH
Q 008207 385 ----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQL-----------------IIQCEPPRDVEAY 443 (574)
Q Consensus 385 ----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~-----------------VI~~d~p~s~~~y 443 (574)
.+..+||+ +|..+++.|++|+.+|||||+++++|||+| +.+ ||+++.|.+..+|
T Consensus 193 ~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~ 267 (431)
T 2v6i_A 193 KAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASA 267 (431)
T ss_dssp HTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHH
T ss_pred HcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHH
Confidence 67789987 578899999999999999999999999999 655 6789999999999
Q ss_pred HHHhcccccCCC-cceEEEEEC
Q 008207 444 IHRSGRTGRAGN-TGVAVMLYD 464 (574)
Q Consensus 444 iqr~GR~gR~g~-~G~~i~l~~ 464 (574)
+||+||+||.|. .|.++++..
T Consensus 268 ~Qr~GR~GR~g~~~~~~~~~~~ 289 (431)
T 2v6i_A 268 AQRRGRIGRNPEKLGDIYAYSG 289 (431)
T ss_dssp HHHHTTSSCCTTCCCCEEEECS
T ss_pred HHhhhccCCCCCCCCeEEEEcC
Confidence 999999999985 555555553
No 60
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=3.9e-36 Score=290.27 Aligned_cols=206 Identities=32% Similarity=0.472 Sum_probs=175.8
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCC
Q 008207 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (574)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (574)
....|+++++++.++++|...||..|+|+|.++++.++.|+|++++||||||||++|++|+++.+... ..
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~----------~~ 97 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE----------FK 97 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT----------SC
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc----------CC
Confidence 34569999999999999999999999999999999999999999999999999999999999887543 23
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCC-CcEEEEChHHHHHhHhcCCccCCCceEE
Q 008207 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKG-IDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (574)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~-~~IlV~Tp~~l~~~l~~~~~~l~~~~~l 265 (574)
++++||++|||+|+.|+++.++.++...++.+..++||.....+...+..+ ++|+|+||++|.+++.++.+.+.++++|
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~l 177 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMF 177 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEE
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEE
Confidence 457999999999999999999999988889999999998877776666555 8999999999999999888889999999
Q ss_pred EecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEE
Q 008207 266 VLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDL 325 (574)
Q Consensus 266 VlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~ 325 (574)
|+||||++++++|...+..++..++. .+|+++||||+|..+..+.+.++ .++..|.+
T Consensus 178 ViDEah~~~~~~~~~~l~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~l-~~p~~i~v 234 (237)
T 3bor_A 178 VLDEADEMLSRGFKDQIYEIFQKLNT--SIQVVLLSATMPTDVLEVTKKFM-RDPIRILV 234 (237)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHSCT--TCEEEEECSSCCHHHHHHHHHHC-SSCEEEC-
T ss_pred EECCchHhhccCcHHHHHHHHHhCCC--CCeEEEEEEecCHHHHHHHHHHC-CCCEEEEe
Confidence 99999999999999999999999876 78999999999999999999999 46665543
No 61
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=5e-36 Score=293.69 Aligned_cols=207 Identities=31% Similarity=0.448 Sum_probs=182.2
Q ss_pred CCcccccC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCC
Q 008207 108 PNAVSRFR--ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (574)
Q Consensus 108 ~~~~~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 185 (574)
...|.+++ +++.+++.|..+||..|+|+|.++++.++.|+|++++||||||||++|++|+++.+...... ..
T Consensus 51 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~------~~ 124 (262)
T 3ly5_A 51 DTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM------PR 124 (262)
T ss_dssp GGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC------GG
T ss_pred cCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc------cc
Confidence 34567776 99999999999999999999999999999999999999999999999999999988753321 12
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcC-CccCCCceE
Q 008207 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG-NIDLSSLKF 264 (574)
Q Consensus 186 ~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~-~~~l~~~~~ 264 (574)
.++++||++|||+||.|+++.++.++...++.+..++|+.....+...+..+++|+|+|||+|.+++.+. .+.+.++++
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~ 204 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQC 204 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCE
Confidence 3567999999999999999999999988899999999999988888888788999999999999998775 467899999
Q ss_pred EEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeE
Q 008207 265 RVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKT 322 (574)
Q Consensus 265 lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~ 322 (574)
||+||||+|++++|...+..++..++. .+|+++||||+|..+..+++.+++..+.+
T Consensus 205 lViDEah~l~~~~~~~~l~~i~~~~~~--~~q~l~~SAT~~~~v~~~~~~~l~~~~~~ 260 (262)
T 3ly5_A 205 LVIDEADRILDVGFEEELKQIIKLLPT--RRQTMLFSATQTRKVEDLARISLKKEPLY 260 (262)
T ss_dssp EEECSHHHHHHTTCHHHHHHHHHHSCS--SSEEEEECSSCCHHHHHHHHHHCSSCCEE
T ss_pred EEEcChHHHhhhhHHHHHHHHHHhCCC--CCeEEEEEecCCHHHHHHHHHHcCCCCee
Confidence 999999999999999999999999987 68999999999999999999998655443
No 62
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=5.9e-36 Score=342.00 Aligned_cols=359 Identities=16% Similarity=0.141 Sum_probs=244.1
Q ss_pred CCCcHHHHHHHHHHhc--CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHH
Q 008207 130 ESLFPIQAMTFDMVLD--GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il~--~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~ 207 (574)
..|+|+|.+++..++. +..+|++++||+|||++++..+...+..+.. .++|||||+ .|+.||..++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~-----------~rvLIVvP~-sLl~Qw~~E~ 219 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAA-----------ERVLIIVPE-TLQHQWLVEM 219 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSC-----------CCEEEECCT-TTHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCC-----------CeEEEEeCH-HHHHHHHHHH
Confidence 4789999999998886 4589999999999999998888777765432 249999999 9999999999
Q ss_pred HHhhCCCCceEEEEeCCcchHHHHH---HhcCCCcEEEEChHHHHHhHhc-CCccCCCceEEEecCchhhhcCCcH-HHH
Q 008207 208 DVYGGAVGLTSCCLYGGAPYHAQEF---KLKKGIDVVIGTPGRIKDHIER-GNIDLSSLKFRVLDEADEMLRMGFV-EDV 282 (574)
Q Consensus 208 ~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~~~~IlV~Tp~~l~~~l~~-~~~~l~~~~~lVlDEah~~l~~~~~-~~~ 282 (574)
..+. ++.+..+.|+... .... ......+|+|+|++.+...... ..+...++++||+||||++.+.+.. ...
T Consensus 220 ~~~f---~l~v~v~~~~~~~-~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~ 295 (968)
T 3dmq_A 220 LRRF---NLRFALFDDERYA-EAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE 295 (968)
T ss_dssp HHHS---CCCCEECCHHHHH-HHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHH
T ss_pred HHHh---CCCEEEEccchhh-hhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHH
Confidence 6654 4555554443322 1111 1223579999999998653221 1234557899999999999654421 111
Q ss_pred HHHHHhccCccCceEEEEeccCch----hHHHHHH----------------------------HhcccCC----------
Q 008207 283 ELILGKVEDANKVQTLLFSATLPS----WVKHIST----------------------------KFLKSDK---------- 320 (574)
Q Consensus 283 ~~il~~l~~~~~~q~ll~SAT~~~----~~~~~~~----------------------------~~~~~~~---------- 320 (574)
...+..+.. ...+++++|||.-. ++..+.. .++....
T Consensus 296 ~~~l~~L~~-~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~ 374 (968)
T 3dmq_A 296 YQAIEQLAE-HVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLG 374 (968)
T ss_dssp HHHHHHHHT-TCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSST
T ss_pred HHHHHHHhh-cCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 222222221 13468999999631 0111100 0000000
Q ss_pred -----------------------------------------eEEEEecCc-ccccccceeEEEE----------------
Q 008207 321 -----------------------------------------KTIDLVGNE-KMKASTNVRHIVL---------------- 342 (574)
Q Consensus 321 -----------------------------------------~~i~~~~~~-~~~~~~~i~~~~~---------------- 342 (574)
..+...... ............+
T Consensus 375 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~ 454 (968)
T 3dmq_A 375 EMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIM 454 (968)
T ss_dssp TTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHT
T ss_pred HHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhh
Confidence 000000000 0000000111111
Q ss_pred -----------------------------eCCchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC-----CCcc
Q 008207 343 -----------------------------PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP-----GARA 388 (574)
Q Consensus 343 -----------------------------~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~-----~~~~ 388 (574)
.+....|...+..++.. ..++++||||+++..++.++..|. .+..
T Consensus 455 ~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~ 533 (968)
T 3dmq_A 455 GARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAV 533 (968)
T ss_dssp TCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEE
T ss_pred hhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEE
Confidence 12233456667777766 367899999999999999999886 4678
Q ss_pred ccccCCHHHHHHHHHHHhCCC--ccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC
Q 008207 389 LHGDIQQSQREVTLAGFRSGK--FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 389 lh~~~~~~~r~~~~~~F~~g~--~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
+||+|++.+|..+++.|++|+ ++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++++...
T Consensus 534 lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~ 613 (968)
T 3dmq_A 534 FHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYL 613 (968)
T ss_dssp ECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEE
T ss_pred EeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecC
Confidence 999999999999999999998 999999999999999999999999999999999999999999999998665443332
Q ss_pred -chHHHHHHHHh--CCcceecCCCCHHHHHHHHHHHHHHHHhh
Q 008207 467 -KSSVSKIERES--GVKFEHISAPQPADIAKAAGVEAAETITQ 506 (574)
Q Consensus 467 -~~~~~~i~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 506 (574)
...-..|.+.. +..+.....|...++.+.....+...+..
T Consensus 614 ~~t~ee~i~~~~~~k~~~~~~~~~~~~~i~~~~~~~l~~~l~~ 656 (968)
T 3dmq_A 614 EKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLAS 656 (968)
T ss_dssp TTSHHHHHHHHHHHTTCCSSSCCSSHHHHHHHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHHhc
Confidence 33334455555 67777888899999988766666666654
No 63
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=9.3e-36 Score=286.30 Aligned_cols=204 Identities=32% Similarity=0.527 Sum_probs=181.7
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCC
Q 008207 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (574)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (574)
....|+++++++.+.+.|.+.||..|+|+|.++++.++.|+|+++++|||||||++|++|++..+... ..
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~----------~~ 91 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE----------NL 91 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT----------SC
T ss_pred CCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc----------CC
Confidence 34569999999999999999999999999999999999999999999999999999999999887643 23
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhCCC-CceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEE
Q 008207 187 APSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (574)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~l 265 (574)
++++||++||++|+.|+++.+..++... ++++..++||.....+...+ .+++|+|+||++|.+++.++.+.+.++++|
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~l 170 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLF 170 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEE
Confidence 4579999999999999999999987655 79999999999887666655 469999999999999998888888999999
Q ss_pred EecCchhhhcCC-cHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEE
Q 008207 266 VLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324 (574)
Q Consensus 266 VlDEah~~l~~~-~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~ 324 (574)
|+||||+++++| |...+..++..++. .+|+++||||+|..+..+...++ .++..+.
T Consensus 171 ViDEah~~~~~~~~~~~~~~i~~~~~~--~~~~l~lSAT~~~~~~~~~~~~~-~~p~~i~ 227 (230)
T 2oxc_A 171 ILDEADKLLEEGSFQEQINWIYSSLPA--SKQMLAVSATYPEFLANALTKYM-RDPTFVR 227 (230)
T ss_dssp EESSHHHHHSTTSSHHHHHHHHHHSCS--SCEEEEEESCCCHHHHHHHTTTC-SSCEEEC
T ss_pred EeCCchHhhcCcchHHHHHHHHHhCCC--CCeEEEEEeccCHHHHHHHHHHc-CCCeEEE
Confidence 999999999998 99999999999986 68999999999999999999888 5665554
No 64
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.8e-35 Score=285.54 Aligned_cols=208 Identities=32% Similarity=0.485 Sum_probs=183.2
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 008207 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (574)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (574)
...|+++++++.+++.|.+.||..|+|+|.++++.++.|+|+++++|||||||++|++|+++.+...... ...+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~------~~~~ 97 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWT------STDG 97 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCC------GGGC
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhccc------ccCC
Confidence 4569999999999999999999999999999999999999999999999999999999999988653221 1235
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcC-CccCCCceEEE
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG-NIDLSSLKFRV 266 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~-~~~l~~~~~lV 266 (574)
+++||++||++|+.|+++.+..++...++.+..++||.+...+...+ .+++|+|+||++|.+++.+. .+.+.++++||
T Consensus 98 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 176 (236)
T 2pl3_A 98 LGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLV 176 (236)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEE
Confidence 67999999999999999999999988889999999998877666555 46999999999999998765 46788999999
Q ss_pred ecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEE
Q 008207 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDL 325 (574)
Q Consensus 267 lDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~ 325 (574)
+||||++++++|...+..++..++. .+|+++||||++..+..+++.++ .++..+.+
T Consensus 177 iDEah~~~~~~~~~~~~~i~~~~~~--~~~~l~~SAT~~~~~~~~~~~~~-~~p~~i~~ 232 (236)
T 2pl3_A 177 LDEADRILDMGFADTMNAVIENLPK--KRQTLLFSATQTKSVKDLARLSL-KNPEYVWV 232 (236)
T ss_dssp ETTHHHHHHTTTHHHHHHHHHTSCT--TSEEEEEESSCCHHHHHHHHHSC-SSCEEEEC
T ss_pred EeChHHHhcCCcHHHHHHHHHhCCC--CCeEEEEEeeCCHHHHHHHHHhC-CCCEEEEe
Confidence 9999999999999999999999976 78999999999999999999998 56666654
No 65
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=3.3e-35 Score=277.69 Aligned_cols=203 Identities=45% Similarity=0.727 Sum_probs=183.6
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCe
Q 008207 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPS 189 (574)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~ 189 (574)
.|+++++++.+++.|.+.||..|+|+|.++++.+++|+|+++++|||||||++|++|+++.+..... ...+++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~-------~~~~~~ 74 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE-------RGRKPR 74 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC-------TTCCCS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-------cCCCCc
Confidence 5889999999999999999999999999999999999999999999999999999999998865321 134568
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecC
Q 008207 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269 (574)
Q Consensus 190 ~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDE 269 (574)
+||++||++|+.|+++.+..++.. +++..++|+.....+...+..+++|+|+||+++.+++.++.+.+.++++||+||
T Consensus 75 ~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE 152 (207)
T 2gxq_A 75 ALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDE 152 (207)
T ss_dssp EEEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEES
T ss_pred EEEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEC
Confidence 999999999999999999988754 788899999988877777777899999999999999998888899999999999
Q ss_pred chhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEE
Q 008207 270 ADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324 (574)
Q Consensus 270 ah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~ 324 (574)
||++++.+|...+..++..++. ..|+++||||+|+.+..+.+.++ .++..+.
T Consensus 153 ah~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~p~~i~ 204 (207)
T 2gxq_A 153 ADEMLSMGFEEEVEALLSATPP--SRQTLLFSATLPSWAKRLAERYM-KNPVLIN 204 (207)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCT--TSEEEEECSSCCHHHHHHHHHHC-SSCEEEE
T ss_pred hhHhhccchHHHHHHHHHhCCc--cCeEEEEEEecCHHHHHHHHHHc-CCCeEEE
Confidence 9999999999999999998876 68999999999999999999998 5666554
No 66
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=3.6e-35 Score=281.10 Aligned_cols=205 Identities=30% Similarity=0.458 Sum_probs=177.1
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 008207 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (574)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (574)
...|+++++++.+++.|.+.||..|+|+|.++++.+++|+|+++++|||||||++|++|+++.+... ..+
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~----------~~~ 82 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS----------VKA 82 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT----------CCS
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc----------CCC
Confidence 3569999999999999999999999999999999999999999999999999999999999988543 234
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEe
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVl 267 (574)
+++||++||++|+.|+++.+..++...++.+..++|+.....+...+.. ++|+|+||++|.+++.++.+.+.++++||+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 83 PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 5799999999999999999999998889999999999887766655554 999999999999999988888999999999
Q ss_pred cCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEe
Q 008207 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLV 326 (574)
Q Consensus 268 DEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~ 326 (574)
||||++++++|...+..++..++. ..|+++||||+++.+..+.+.++ .++..+.+.
T Consensus 162 DEah~~~~~~~~~~l~~i~~~~~~--~~~~i~lSAT~~~~~~~~~~~~~-~~p~~i~~~ 217 (224)
T 1qde_A 162 DEADEMLSSGFKEQIYQIFTLLPP--TTQVVLLSATMPNDVLEVTTKFM-RNPVRILVK 217 (224)
T ss_dssp ETHHHHHHTTCHHHHHHHHHHSCT--TCEEEEEESSCCHHHHHHHHHHC-SSCEEEC--
T ss_pred cChhHHhhhhhHHHHHHHHHhCCc--cCeEEEEEeecCHHHHHHHHHHC-CCCEEEEec
Confidence 999999999999999999999876 78999999999999999999999 566666543
No 67
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=6.8e-35 Score=278.35 Aligned_cols=207 Identities=30% Similarity=0.453 Sum_probs=180.5
Q ss_pred CCCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCC
Q 008207 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183 (574)
Q Consensus 104 ~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~ 183 (574)
...+...|+++++++.+.++|.+.||..|+|+|.++++.+++|+|+++++|||+|||++|++|++..+...
T Consensus 9 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~--------- 79 (220)
T 1t6n_A 9 VSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV--------- 79 (220)
T ss_dssp -----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC---------
T ss_pred ccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc---------
Confidence 34455679999999999999999999999999999999999999999999999999999999999887543
Q ss_pred CCCCCeEEEEeCcHHHHHHHHHHHHHhhCCC-CceEEEEeCCcchHHHHHHhc-CCCcEEEEChHHHHHhHhcCCccCCC
Q 008207 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLK-KGIDVVIGTPGRIKDHIERGNIDLSS 261 (574)
Q Consensus 184 ~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~-~~~~IlV~Tp~~l~~~l~~~~~~l~~ 261 (574)
..++++||++||++|+.|+++.++.+.... ++++..++|+.+...+...+. ..++|+|+||++|.+++.++.+.+.+
T Consensus 80 -~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 80 -TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp -TTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred -CCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 224579999999999999999999988765 799999999998877766654 45799999999999999988888999
Q ss_pred ceEEEecCchhhhc-CCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEE
Q 008207 262 LKFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTI 323 (574)
Q Consensus 262 ~~~lVlDEah~~l~-~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i 323 (574)
+++||+||||++++ .+|...+..++..++. .+|+++||||++..+..+.+.++ .++..|
T Consensus 159 ~~~lViDEah~~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~p~~i 218 (220)
T 1t6n_A 159 IKHFILDECDKMLEQLDMRRDVQEIFRMTPH--EKQVMMFSATLSKEIRPVCRKFM-QDPMEI 218 (220)
T ss_dssp CCEEEEESHHHHHSSHHHHHHHHHHHHTSCS--SSEEEEEESCCCTTTHHHHHTTC-SSCEEE
T ss_pred CCEEEEcCHHHHhcccCcHHHHHHHHHhCCC--cCeEEEEEeecCHHHHHHHHHHc-CCCeEE
Confidence 99999999999987 5788899999988876 68999999999999999999998 455554
No 68
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=2.4e-34 Score=304.55 Aligned_cols=315 Identities=21% Similarity=0.218 Sum_probs=231.8
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHH
Q 008207 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (574)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (574)
.|+ .|+++|..+.-.+..|+ |+...||+|||+++.+|++-..+.+. .+.|++||+.||.|-+++
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~-------------~vhVvT~ndyLA~rdae~ 135 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGK-------------GVHLVTVNDYLARRDALW 135 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSS-------------CEEEEESSHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCC-------------ceEEEeccHHHHHhHHHH
Confidence 465 79999999888888887 99999999999999999986655543 389999999999999999
Q ss_pred HHHhhCCCCceEEEEeCC--------------------------------------------------cchHHHHHHhcC
Q 008207 207 FDVYGGAVGLTSCCLYGG--------------------------------------------------APYHAQEFKLKK 236 (574)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg--------------------------------------------------~~~~~~~~~l~~ 236 (574)
+..+..++|+++++++.. .+.. .+.-..
T Consensus 136 m~~l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--err~aY 213 (822)
T 3jux_A 136 MGPVYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEI--TRKEAY 213 (822)
T ss_dssp HHHHHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBC--CHHHHH
T ss_pred HHHHHHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHH--HHHHHh
Confidence 999999999999999982 1111 111122
Q ss_pred CCcEEEEChHHHH-HhHhc------CCccCCCceEEEecCchhhhc-------------CC---cHHHHHHHHHhccCc-
Q 008207 237 GIDVVIGTPGRIK-DHIER------GNIDLSSLKFRVLDEADEMLR-------------MG---FVEDVELILGKVEDA- 292 (574)
Q Consensus 237 ~~~IlV~Tp~~l~-~~l~~------~~~~l~~~~~lVlDEah~~l~-------------~~---~~~~~~~il~~l~~~- 292 (574)
.+||.++|..-|- |.|.. .....+.+.+.||||+|.+|= .. ++..+..+...+...
T Consensus 214 ~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~ 293 (822)
T 3jux_A 214 LCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDK 293 (822)
T ss_dssp HSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTT
T ss_pred cCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCC
Confidence 4899999998873 33332 223356799999999999750 00 111111111111100
Q ss_pred ------------------------------------------------------c-------------------------
Q 008207 293 ------------------------------------------------------N------------------------- 293 (574)
Q Consensus 293 ------------------------------------------------------~------------------------- 293 (574)
.
T Consensus 294 dy~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr 373 (822)
T 3jux_A 294 DFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRR 373 (822)
T ss_dssp TEEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCC
T ss_pred cEEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCc
Confidence 0
Q ss_pred -----------------------------------CceEEEEeccCchhHHHHHHHhcccCCeEEEEecCccccccccee
Q 008207 294 -----------------------------------KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR 338 (574)
Q Consensus 294 -----------------------------------~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 338 (574)
-.++.+||+|+......+.+.|- ..++.+... .....+.
T Consensus 374 ~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~---l~vv~IPtn---kp~~R~d 447 (822)
T 3jux_A 374 YSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYG---MEVVVIPTH---KPMIRKD 447 (822)
T ss_dssp CGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSC---CCEEECCCS---SCCCCEE
T ss_pred CchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhC---CeEEEECCC---CCcceee
Confidence 13788999999888777766663 234433222 1112222
Q ss_pred E-EEEeCCchhhhhhhhHHHHh-hcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccE
Q 008207 339 H-IVLPCSSSARSQVIPDIIRC-YSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMT 412 (574)
Q Consensus 339 ~-~~~~~~~~~~~~~l~~ll~~-~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~v 412 (574)
+ ..+......|...+...+.. ...+.++||||+|++.++.|+..|. .+.++||+..+.++..+..+|+.| .|
T Consensus 448 ~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~V 525 (822)
T 3jux_A 448 HDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MV 525 (822)
T ss_dssp CCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CE
T ss_pred cCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eE
Confidence 2 23445667777777777654 3467899999999999999999997 567899996666665556666666 69
Q ss_pred EEEeccccccCCCC--------CCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCCc
Q 008207 413 LVATNVAARGLDIN--------DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK 467 (574)
Q Consensus 413 LvaTd~~~~Gldi~--------~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~~ 467 (574)
+||||+|+||+||+ ++.|||+|++|.+...|+||+|||||+|.+|.+++|++..+
T Consensus 526 tVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 526 TIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp EEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred EEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 99999999999998 67799999999999999999999999999999999999874
No 69
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.8e-34 Score=278.78 Aligned_cols=208 Identities=28% Similarity=0.432 Sum_probs=177.3
Q ss_pred Cccccc----CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCC
Q 008207 109 NAVSRF----RISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (574)
Q Consensus 109 ~~~~~~----~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~ 184 (574)
..|+++ ++++.++++|.++||..|+|+|.++++.++.|+|++++||||||||++|++|+++.+....
T Consensus 25 ~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~--------- 95 (245)
T 3dkp_A 25 ATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPA--------- 95 (245)
T ss_dssp SSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCC---------
T ss_pred cCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcc---------
Confidence 456655 8999999999999999999999999999999999999999999999999999999886532
Q ss_pred CCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHH-HHhcCCCcEEEEChHHHHHhHhcC--CccCCC
Q 008207 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE-FKLKKGIDVVIGTPGRIKDHIERG--NIDLSS 261 (574)
Q Consensus 185 ~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~-~~l~~~~~IlV~Tp~~l~~~l~~~--~~~l~~ 261 (574)
..++++||++|||+|+.|+++.+..++...++.+..++|+....... .....+++|+|+||++|.+++.+. .+.+.+
T Consensus 96 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 175 (245)
T 3dkp_A 96 NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLAS 175 (245)
T ss_dssp SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTT
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccccc
Confidence 24567999999999999999999999988889888887765433221 223467899999999999999876 467899
Q ss_pred ceEEEecCchhhhc---CCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhcccCCeEEEEec
Q 008207 262 LKFRVLDEADEMLR---MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVG 327 (574)
Q Consensus 262 ~~~lVlDEah~~l~---~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~ 327 (574)
+++||+||||+|++ .+|...+..++..+... +.|+++||||+|..+..+.+.++ .++..+.+..
T Consensus 176 ~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~SAT~~~~v~~~~~~~l-~~p~~i~~~~ 242 (245)
T 3dkp_A 176 VEWLVVDESDKLFEDGKTGFRDQLASIFLACTSH-KVRRAMFSATFAYDVEQWCKLNL-DNVISVSIGA 242 (245)
T ss_dssp CCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCT-TCEEEEEESSCCHHHHHHHHHHS-SSCEEEEECC
T ss_pred CcEEEEeChHHhcccccccHHHHHHHHHHhcCCC-CcEEEEEeccCCHHHHHHHHHhC-CCCEEEEeCC
Confidence 99999999999998 57899999998777542 68999999999999999999999 5777776543
No 70
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=3.2e-33 Score=300.15 Aligned_cols=308 Identities=14% Similarity=0.188 Sum_probs=210.9
Q ss_pred CCCcHHHHHHHHHHh----cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHH
Q 008207 130 ESLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il----~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~ 205 (574)
..|+|+|.++++++. .++++|++++||+|||++++..+........ ..++|||||+ .|+.||.+
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~-----------~~~~LIv~P~-~l~~qw~~ 103 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENE-----------LTPSLVICPL-SVLKNWEE 103 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTC-----------CSSEEEEECS-TTHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCC-----------CCCEEEEccH-HHHHHHHH
Confidence 479999999998873 5789999999999999997655554443321 2359999995 69999999
Q ss_pred HHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHH
Q 008207 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285 (574)
Q Consensus 206 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~i 285 (574)
++.+++. ++++..+.|+... ......+|+|+||+++..... +....+++||+||||++.+.+ ......
T Consensus 104 e~~~~~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~ 171 (500)
T 1z63_A 104 ELSKFAP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKA 171 (500)
T ss_dssp HHHHHCT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHH
T ss_pred HHHHHCC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHH
Confidence 9999874 4666666666521 122458999999999976543 344578999999999997654 223444
Q ss_pred HHhccCccCceEEEEeccCch-hHHHH---H---------------------------------HHhcccCCeEEEEecC
Q 008207 286 LGKVEDANKVQTLLFSATLPS-WVKHI---S---------------------------------TKFLKSDKKTIDLVGN 328 (574)
Q Consensus 286 l~~l~~~~~~q~ll~SAT~~~-~~~~~---~---------------------------------~~~~~~~~~~i~~~~~ 328 (574)
+..++ ..+.+++|||+.. ...++ . ..++ .+..+.....
T Consensus 172 l~~l~---~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l--~~~~lrr~k~ 246 (500)
T 1z63_A 172 VKELK---SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII--SPFILRRTKY 246 (500)
T ss_dssp HHTSC---EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH--TTTEECCCTT
T ss_pred HHhhc---cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH--hhHeeeeccc
Confidence 44553 3578999999732 11111 1 1111 0111110000
Q ss_pred c---ccccccceeE-EEEeCC-------------------------------------------------------chhh
Q 008207 329 E---KMKASTNVRH-IVLPCS-------------------------------------------------------SSAR 349 (574)
Q Consensus 329 ~---~~~~~~~i~~-~~~~~~-------------------------------------------------------~~~~ 349 (574)
. ....+..... .++... ...|
T Consensus 247 ~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K 326 (500)
T 1z63_A 247 DKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGK 326 (500)
T ss_dssp CHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHH
T ss_pred ccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchh
Confidence 0 0001111111 111111 1223
Q ss_pred hhhhhHHHHh-hcCCCeEEEEecChHHHHHHHHhCC-----CCccccccCCHHHHHHHHHHHhCC-Ccc-EEEEeccccc
Q 008207 350 SQVIPDIIRC-YSSGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSG-KFM-TLVATNVAAR 421 (574)
Q Consensus 350 ~~~l~~ll~~-~~~~~~~lVF~~t~~~~~~l~~~l~-----~~~~lh~~~~~~~r~~~~~~F~~g-~~~-vLvaTd~~~~ 421 (574)
...+..++.. ...+.++||||++...++.+...|. .+..+||++++.+|.++++.|++| ..+ +|+||+++++
T Consensus 327 ~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~ 406 (500)
T 1z63_A 327 MIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGF 406 (500)
T ss_dssp HHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-C
T ss_pred HHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccC
Confidence 3334444443 2467899999999999999988875 577899999999999999999998 555 7999999999
Q ss_pred cCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceE--EEEECCC
Q 008207 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA--VMLYDPR 466 (574)
Q Consensus 422 Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~--i~l~~~~ 466 (574)
|+|++++++||+||+|+++..|+||+||++|.|+.+.+ |.|+...
T Consensus 407 Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 407 GINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp CCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred CCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 99999999999999999999999999999999987654 6677765
No 71
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=5.7e-33 Score=274.82 Aligned_cols=224 Identities=34% Similarity=0.545 Sum_probs=198.3
Q ss_pred ceeEEEEeCCchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCcc
Q 008207 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411 (574)
Q Consensus 336 ~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~ 411 (574)
.+.|+++.+....|...+..++.... ++++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|.++
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~ 80 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR 80 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce
Confidence 46789999999999999999998874 7899999999999999999985 577899999999999999999999999
Q ss_pred EEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHHhCCcceecCCCCHH
Q 008207 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPA 490 (574)
Q Consensus 412 vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~~~~~ 490 (574)
|||||+++++|+|+|++++||+||+|++...|+||+|||||.|+.|.|++|+++. ...+..+++.++.++..+..|+.+
T Consensus 81 vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~ 160 (300)
T 3i32_A 81 VLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPE 160 (300)
T ss_dssp EEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHH
T ss_pred EEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999998 788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHhccCCCHHHHHHHHHHHhcccc----cccccCCCce--EEecCccc
Q 008207 491 DIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVVSA----FLFSSSSNSL--SLTSGTMC 563 (574)
Q Consensus 491 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~--~~~~~~~~ 563 (574)
++...........+..+.......|.+.++++++.. +.+.+++||+.+.|.. +++++.++++ .+..+.+.
T Consensus 161 ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~---~~e~laaal~~l~~~~~~~~~l~~~~~~~~~~~~~~g~~~ 236 (300)
T 3i32_A 161 EVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEG---RVEVVAALLALLLGGAPAERSLLTGEEGWRTYKATGPRLS 236 (300)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHT---CHHHHHHHHHHHHTCCCCCBCTTTCCBSCBCEEEECTTCC
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcC---cHHHHHHHHHHHhcCCcCccccccCCCCcEEEEEecCCCC
Confidence 999988888888888777777899999999999884 5667889999998876 7888888887 44555543
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=1.9e-32 Score=310.61 Aligned_cols=321 Identities=13% Similarity=0.114 Sum_probs=215.2
Q ss_pred CCCcHHHHHHHHHHhc--------------CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeC
Q 008207 130 ESLFPIQAMTFDMVLD--------------GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il~--------------~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~P 195 (574)
..|+|+|..+++.++. +++++++++||||||+++ ++++..+... ....++|||+|
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~----------~~~~rvLvlvp 338 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL----------DFIDKVFFVVD 338 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC----------TTCCEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc----------CCCceEEEEeC
Confidence 3699999999999875 378999999999999997 6666555432 12347999999
Q ss_pred cHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhc-CCCcEEEEChHHHHHhHhcCC--ccCCCceEEEecCchh
Q 008207 196 TRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK-KGIDVVIGTPGRIKDHIERGN--IDLSSLKFRVLDEADE 272 (574)
Q Consensus 196 treLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~IlV~Tp~~l~~~l~~~~--~~l~~~~~lVlDEah~ 272 (574)
+++|+.|+.+.+..++.. .+.|+.+.......+. .+++|+|+||++|..++.... ..+....+||+||||+
T Consensus 339 r~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHr 412 (1038)
T 2w00_A 339 RKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHR 412 (1038)
T ss_dssp GGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCT
T ss_pred cHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccch
Confidence 999999999999887643 2345555555555553 568999999999999886542 2456789999999999
Q ss_pred hhcCCcHHHHHHHHHhccCccCceEEEEeccCchhHH----HHHHHhccc----------------CCeEEEEecCc-cc
Q 008207 273 MLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVK----HISTKFLKS----------------DKKTIDLVGNE-KM 331 (574)
Q Consensus 273 ~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~----~~~~~~~~~----------------~~~~i~~~~~~-~~ 331 (574)
+.. ...+..|...++ +.++++||||+..... .....++.. .+..+...... ..
T Consensus 413 s~~---~~~~~~I~~~~p---~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~ 486 (1038)
T 2w00_A 413 SQF---GEAQKNLKKKFK---RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQF 486 (1038)
T ss_dssp THH---HHHHHHHHHHCS---SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGG
T ss_pred hcc---hHHHHHHHHhCC---cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchh
Confidence 863 334566777776 4699999999864221 011111100 01111111000 00
Q ss_pred c---------cccceeEEEEeCCchhhhhhhhHHHHhh----------cCCCeEEEEecChHHHHHHHHhCCC-------
Q 008207 332 K---------ASTNVRHIVLPCSSSARSQVIPDIIRCY----------SSGGRTIIFTETKESASQLADLLPG------- 385 (574)
Q Consensus 332 ~---------~~~~i~~~~~~~~~~~~~~~l~~ll~~~----------~~~~~~lVF~~t~~~~~~l~~~l~~------- 385 (574)
. ....+.+............++..++..+ ..+.++||||+++..|..++..|..
T Consensus 487 ~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~ 566 (1038)
T 2w00_A 487 KSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAAN 566 (1038)
T ss_dssp HHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred hhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcc
Confidence 0 0000000000011111112233344322 1346899999999999998877641
Q ss_pred ---------C-cccccc----------C----------CH-----------------------------HHHHHHHHHHh
Q 008207 386 ---------A-RALHGD----------I----------QQ-----------------------------SQREVTLAGFR 406 (574)
Q Consensus 386 ---------~-~~lh~~----------~----------~~-----------------------------~~r~~~~~~F~ 406 (574)
+ .++||+ + ++ ..|..++++|+
T Consensus 567 ~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk 646 (1038)
T 2w00_A 567 KSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVK 646 (1038)
T ss_dssp TSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHH
T ss_pred cccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHH
Confidence 2 345542 2 22 24788999999
Q ss_pred CCCccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCc----ceEEEEECCCchHHHHHH
Q 008207 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNT----GVAVMLYDPRKSSVSKIE 474 (574)
Q Consensus 407 ~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~----G~~i~l~~~~~~~~~~i~ 474 (574)
+|+++|||+|+++.+|+|+|.+ +|+++|.|.+...|+||+||++|.+.. |.++.|++........+.
T Consensus 647 ~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~~~~l~~Al~ 717 (1038)
T 2w00_A 647 NQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDLERSTIDAIT 717 (1038)
T ss_dssp TTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCCHHHHHHHHH
T ss_pred cCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccccHHHHHHHHH
Confidence 9999999999999999999999 788999999999999999999999764 778877764333333333
No 73
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.98 E-value=1.8e-31 Score=252.33 Aligned_cols=202 Identities=36% Similarity=0.588 Sum_probs=180.8
Q ss_pred ceeEEEEeCCchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCcc
Q 008207 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411 (574)
Q Consensus 336 ~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~ 411 (574)
.+.+.++.++...|...+..++... .++++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|..+
T Consensus 5 ~~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~ 83 (212)
T 3eaq_A 5 TYEEEAVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR 83 (212)
T ss_dssp CBCCEEEECCTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC
T ss_pred ceeeeEEeCCHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe
Confidence 4567778888899999999999876 57899999999999999999986 678899999999999999999999999
Q ss_pred EEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHHhCCcceecCCCCHH
Q 008207 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPA 490 (574)
Q Consensus 412 vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~~~~~ 490 (574)
|||||+++++|+|+|++++||+||+|+++..|+||+|||||.|+.|.|++|+++. ...+..+++.++.++..+..|+.+
T Consensus 84 vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 163 (212)
T 3eaq_A 84 VLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPE 163 (212)
T ss_dssp EEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHH
T ss_pred EEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999998 788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHhccCCCHHHHHHHHHHHh
Q 008207 491 DIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKA 541 (574)
Q Consensus 491 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 541 (574)
++...........+..........|.+.++++++.. ++.+ ++++|..+
T Consensus 164 ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~--~~~~-l~~al~~l 211 (212)
T 3eaq_A 164 EVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEG--RVEV-VAALLALL 211 (212)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHT--CHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcC--CHHH-HHHHHHhh
Confidence 999988888888888776655688999999999886 5665 45666654
No 74
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.98 E-value=4.7e-30 Score=282.12 Aligned_cols=321 Identities=14% Similarity=0.196 Sum_probs=217.6
Q ss_pred CCcHHHHHHHHHHh---------cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHH
Q 008207 131 SLFPIQAMTFDMVL---------DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (574)
Q Consensus 131 ~~~~~Q~~~i~~il---------~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~ 201 (574)
.|+|+|.+++.++. .+...|+..+||+|||++++..+...+...+... ....++|||||+ +|+.
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~------p~~~~~LiV~P~-sll~ 127 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCK------PEIDKVIVVSPS-SLVR 127 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSS------CSCSCEEEEECH-HHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcccc------CCCCcEEEEecH-HHHH
Confidence 79999999999874 4567999999999999998877776665543211 122359999997 8999
Q ss_pred HHHHHHHHhhCCCCceEEEEeCCcchHHH--HHH-hc-----CCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhh
Q 008207 202 QVHEDFDVYGGAVGLTSCCLYGGAPYHAQ--EFK-LK-----KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (574)
Q Consensus 202 Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~--~~~-l~-----~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~ 273 (574)
||.+++.++... .+.+..++||...... ... .. ...+|+|+|++.+..... .+....+++||+||||++
T Consensus 128 qW~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~i 204 (644)
T 1z3i_X 128 NWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRL 204 (644)
T ss_dssp HHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGC
T ss_pred HHHHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceec
Confidence 999999998754 4667777776543221 111 11 247899999999976542 334457889999999998
Q ss_pred hcCCcHHHHHHHHHhccCccCceEEEEeccCchh----H---------------HHHHHHhccc----------------
Q 008207 274 LRMGFVEDVELILGKVEDANKVQTLLFSATLPSW----V---------------KHISTKFLKS---------------- 318 (574)
Q Consensus 274 l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~----~---------------~~~~~~~~~~---------------- 318 (574)
.+.. ......+..+. ....+++|||.-.. + ..+.+.|...
T Consensus 205 kn~~--~~~~~al~~l~---~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~ 279 (644)
T 1z3i_X 205 KNSD--NQTYLALNSMN---AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAA 279 (644)
T ss_dssp CTTC--HHHHHHHHHHC---CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHH
T ss_pred CChh--hHHHHHHHhcc---cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHH
Confidence 6544 22233333443 34789999995210 0 0010100000
Q ss_pred ------------CCeEEEEecCcc-cccccceeEEE-Ee-----------------------------------------
Q 008207 319 ------------DKKTIDLVGNEK-MKASTNVRHIV-LP----------------------------------------- 343 (574)
Q Consensus 319 ------------~~~~i~~~~~~~-~~~~~~i~~~~-~~----------------------------------------- 343 (574)
.+..+.-..... ...+....+.. +.
T Consensus 280 ~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~ 359 (644)
T 1z3i_X 280 GEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKL 359 (644)
T ss_dssp HHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHH
Confidence 000000000000 00000000000 00
Q ss_pred -----------------------------------CCchhhhhhhhHHHHhh--cCCCeEEEEecChHHHHHHHHhCC--
Q 008207 344 -----------------------------------CSSSARSQVIPDIIRCY--SSGGRTIIFTETKESASQLADLLP-- 384 (574)
Q Consensus 344 -----------------------------------~~~~~~~~~l~~ll~~~--~~~~~~lVF~~t~~~~~~l~~~l~-- 384 (574)
...+.|...+..++... ..+.++|||+++...++.+...|.
T Consensus 360 c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~ 439 (644)
T 1z3i_X 360 CNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNR 439 (644)
T ss_dssp HHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHC
Confidence 00122333444555443 257899999999999999999886
Q ss_pred --CCccccccCCHHHHHHHHHHHhCCCc---cEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcc--
Q 008207 385 --GARALHGDIQQSQREVTLAGFRSGKF---MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG-- 457 (574)
Q Consensus 385 --~~~~lh~~~~~~~r~~~~~~F~~g~~---~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G-- 457 (574)
.+..+||++++.+|..+++.|++|.. .+|++|+++++|||++++++||+||+|+++..|.||+||++|.|+..
T Consensus 440 g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v 519 (644)
T 1z3i_X 440 RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTC 519 (644)
T ss_dssp TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCce
Confidence 56789999999999999999999865 48999999999999999999999999999999999999999999865
Q ss_pred eEEEEECCC
Q 008207 458 VAVMLYDPR 466 (574)
Q Consensus 458 ~~i~l~~~~ 466 (574)
.+|.|+...
T Consensus 520 ~v~~lv~~~ 528 (644)
T 1z3i_X 520 YIYRLLSTG 528 (644)
T ss_dssp EEEEEEETT
T ss_pred EEEEEEECC
Confidence 457777776
No 75
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.4e-30 Score=291.58 Aligned_cols=328 Identities=15% Similarity=0.224 Sum_probs=224.7
Q ss_pred CCCcHHHHHHHHHHh----cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHH
Q 008207 130 ESLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il----~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~ 205 (574)
.+|+|+|.+++.+++ .++++|++.+||+|||++++..+...+..... ...+||||| ..|+.||.+
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~----------~~~~LIV~P-~sll~qW~~ 303 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQ----------NGPHIIVVP-LSTMPAWLD 303 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSC----------CSCEEEECC-TTTHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCC----------CCCEEEEEC-chHHHHHHH
Confidence 378999999998776 78999999999999999876666544432211 123899999 588999999
Q ss_pred HHHHhhCCCCceEEEEeCCcchHHHHHH------------hcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhh
Q 008207 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFK------------LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (574)
Q Consensus 206 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~------------l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~ 273 (574)
++.+++ .++++.+++|+......... ....++|+|+|++.+...... +....+++|||||||++
T Consensus 304 E~~~~~--p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~l 379 (800)
T 3mwy_W 304 TFEKWA--PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRL 379 (800)
T ss_dssp HHHHHS--TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGG
T ss_pred HHHHHC--CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhh
Confidence 999987 45777777777654443322 223578999999999775432 22335789999999999
Q ss_pred hcCCcHHHHHHHHHhccCccCceEEEEeccCc----hhHHHHHHHhccc----------------------------CCe
Q 008207 274 LRMGFVEDVELILGKVEDANKVQTLLFSATLP----SWVKHISTKFLKS----------------------------DKK 321 (574)
Q Consensus 274 l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~----~~~~~~~~~~~~~----------------------------~~~ 321 (574)
.+.. ......+..++ ....+++|||.- .++..+....... .+.
T Consensus 380 kn~~--s~~~~~l~~l~---~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~ 454 (800)
T 3mwy_W 380 KNAE--SSLYESLNSFK---VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPF 454 (800)
T ss_dssp CCSS--SHHHHHHTTSE---EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGG
T ss_pred cCch--hHHHHHHHHhh---hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHH
Confidence 6543 23444455554 356799999962 1222222111000 000
Q ss_pred EEEEecCcccc-cccce-eEEEEeCC------------------------------------------------------
Q 008207 322 TIDLVGNEKMK-ASTNV-RHIVLPCS------------------------------------------------------ 345 (574)
Q Consensus 322 ~i~~~~~~~~~-~~~~i-~~~~~~~~------------------------------------------------------ 345 (574)
.+......... .+... ...++...
T Consensus 455 ~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~ 534 (800)
T 3mwy_W 455 ILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVL 534 (800)
T ss_dssp EEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHC
T ss_pred HhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHH
Confidence 11100000000 00000 00000000
Q ss_pred -------------------chhhhhhhhHHHHhh-cCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHH
Q 008207 346 -------------------SSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVT 401 (574)
Q Consensus 346 -------------------~~~~~~~l~~ll~~~-~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~ 401 (574)
...|...+..++... ..+.++|||++....++.|...|. .+..+||++++.+|..+
T Consensus 535 ~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~ 614 (800)
T 3mwy_W 535 QKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRIS 614 (800)
T ss_dssp CCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHH
T ss_pred HhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHH
Confidence 123444555555543 356799999999999999999986 67789999999999999
Q ss_pred HHHHhCCCc---cEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcc--eEEEEECCC--chH-HHHH
Q 008207 402 LAGFRSGKF---MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG--VAVMLYDPR--KSS-VSKI 473 (574)
Q Consensus 402 ~~~F~~g~~---~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G--~~i~l~~~~--~~~-~~~i 473 (574)
++.|+++.. .+|++|.+++.|||++.+++||+||+|+|+..++||+||++|.|+.. .+|.|+... +.. +...
T Consensus 615 i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~ 694 (800)
T 3mwy_W 615 IDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERA 694 (800)
T ss_dssp HHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHH
T ss_pred HHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHH
Confidence 999998554 59999999999999999999999999999999999999999999855 457788877 333 4444
Q ss_pred HHHh
Q 008207 474 ERES 477 (574)
Q Consensus 474 ~~~~ 477 (574)
.+..
T Consensus 695 ~~K~ 698 (800)
T 3mwy_W 695 RKKM 698 (800)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 4443
No 76
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=7.5e-30 Score=275.03 Aligned_cols=130 Identities=23% Similarity=0.292 Sum_probs=114.1
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHH
Q 008207 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (574)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (574)
.|+ .||++|..++|.++.|+ |+.++||+|||++|++|++.....+. +++|++||++||.|++++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~-------------qv~VvTPTreLA~Qdae~ 139 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGK-------------GVHVVTVNDYLARRDAEW 139 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCS-------------CCEEEESSHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCC-------------CEEEEeCCHHHHHHHHHH
Confidence 699 99999999999999998 99999999999999999975554332 489999999999999999
Q ss_pred HHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHH-HHhHhcCC------ccCC---CceEEEecCchhhh
Q 008207 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERGN------IDLS---SLKFRVLDEADEML 274 (574)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~~~------~~l~---~~~~lVlDEah~~l 274 (574)
+..++.++++++.+++||.+.. .+....++||+|+|||+| .|++..+. +.++ ++.++||||||.||
T Consensus 140 m~~l~~~lGLsv~~i~Gg~~~~--~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 140 MGPVYRGLGLSVGVIQHASTPA--ERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHHHHHTTTCCEEECCTTCCHH--HHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHHHHHhcCCeEEEEeCCCCHH--HHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 9999999999999999998854 344445699999999999 88887653 5677 89999999999997
No 77
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=1.7e-28 Score=269.56 Aligned_cols=162 Identities=22% Similarity=0.282 Sum_probs=123.2
Q ss_pred CceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhhhhhhhHHHHhhcCCCeEEEEecCh
Q 008207 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETK 373 (574)
Q Consensus 294 ~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~ 373 (574)
..|+++||||++...... ....+............ ...+.........++..+......+.++||||+|+
T Consensus 380 ~~q~i~~SAT~~~~~~~~-------~~~~~~~~~r~~~l~~p---~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 449 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH-------SGRVVEQIIRPTGLLDP---LVRVKPTENQILDLMEGIRERAARGERTLVTVLTV 449 (664)
T ss_dssp CSEEEEEESSCCHHHHHH-------CSEEEEECSCTTCCCCC---EEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred cCCEEEEecCCCHHHHHh-------hhCeeeeeeccCCCCCC---eEEEecccchHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 468999999998754221 11222222111001111 11122222333344444444445678999999999
Q ss_pred HHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEeCC-----CCCHhHHH
Q 008207 374 ESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEP-----PRDVEAYI 444 (574)
Q Consensus 374 ~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~-----p~s~~~yi 444 (574)
..++.|+..|. .+..+||++++.+|..+++.|+.|+++|||||+++++|+|+|+|++||++|. |.+..+|+
T Consensus 450 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~i 529 (664)
T 1c4o_A 450 RMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 529 (664)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHH
T ss_pred HHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHH
Confidence 99999999987 5678999999999999999999999999999999999999999999999997 99999999
Q ss_pred HHhcccccCCCcceEEEEECCC
Q 008207 445 HRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 445 qr~GR~gR~g~~G~~i~l~~~~ 466 (574)
||+|||||.| .|.|++|+++.
T Consensus 530 Qr~GRagR~~-~G~~i~~~~~~ 550 (664)
T 1c4o_A 530 QTIGRAARNA-RGEVWLYADRV 550 (664)
T ss_dssp HHHGGGTTST-TCEEEEECSSC
T ss_pred HHHCccCcCC-CCEEEEEEcCC
Confidence 9999999995 89999999986
No 78
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.96 E-value=7.3e-28 Score=264.30 Aligned_cols=162 Identities=23% Similarity=0.284 Sum_probs=123.8
Q ss_pred CceEEEEeccCchhHHHHHHHhcccCCeEEEEecCcccccccceeEEEEeCCchhhhhhhhHHHHhhcCCCeEEEEecCh
Q 008207 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETK 373 (574)
Q Consensus 294 ~~q~ll~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~ 373 (574)
..|+++||||++....... . ..+...........+ ...+.........++..+......+.++||||+|+
T Consensus 386 ~~q~i~~SAT~~~~~~~~~-----~--~~~~~~~r~~~l~~p---~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEHT-----D--EMVEQIIRPTGLLDP---LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp CSEEEEECSSCCHHHHHHC-----S--SCEEECCCTTCCCCC---EEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred CCCEEEEecCCChhHHHhh-----h--CeeeeeecccCCCCC---eEEEecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 5789999999987542220 1 111211111000111 11222223333444455555555778999999999
Q ss_pred HHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEeCC-----CCCHhHHH
Q 008207 374 ESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEP-----PRDVEAYI 444 (574)
Q Consensus 374 ~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~-----p~s~~~yi 444 (574)
..++.|+..|. .+..+||++++.+|..+++.|++|+++|||||+++++|+|+|+|++||++|. |.+..+|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 99999999987 5678999999999999999999999999999999999999999999999997 99999999
Q ss_pred HHhcccccCCCcceEEEEECCC
Q 008207 445 HRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 445 qr~GR~gR~g~~G~~i~l~~~~ 466 (574)
||+|||||. ..|.|++|+++.
T Consensus 536 Qr~GRagR~-~~G~~i~~~~~~ 556 (661)
T 2d7d_A 536 QTIGRAARN-AEGRVIMYADKI 556 (661)
T ss_dssp HHHHTTTTS-TTCEEEEECSSC
T ss_pred HHhCcccCC-CCCEEEEEEeCC
Confidence 999999998 699999999987
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=6e-28 Score=218.56 Aligned_cols=153 Identities=35% Similarity=0.580 Sum_probs=142.1
Q ss_pred ccccceeEEEEeCCchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhC
Q 008207 332 KASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407 (574)
Q Consensus 332 ~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~ 407 (574)
....++.|.++.+....|...|..++... .++++||||+++..++.++..|. .+..+||+|++.+|..+++.|++
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 34567999999999999999999999876 56799999999999999999986 67899999999999999999999
Q ss_pred CCccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHHhCCcceecC
Q 008207 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHIS 485 (574)
Q Consensus 408 g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~ 485 (574)
|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. ...+..+++.++.++++++
T Consensus 84 g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 84 GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEECC
T ss_pred CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCccC
Confidence 99999999999999999999999999999999999999999999999999999999988 7788999999999888754
No 80
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=5.5e-28 Score=221.57 Aligned_cols=159 Identities=30% Similarity=0.513 Sum_probs=141.0
Q ss_pred cccceeEEEEeCCchh-hhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhC
Q 008207 333 ASTNVRHIVLPCSSSA-RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407 (574)
Q Consensus 333 ~~~~i~~~~~~~~~~~-~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~ 407 (574)
+..++.|.++.++... |...|..++... .++++||||+++..++.++..|. .+..+||+|++.+|..+++.|++
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 4568999999998766 899999988875 56799999999999999999986 57789999999999999999999
Q ss_pred CCccEEEEeccccccCCCCCCcEEEEeCCC------CCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHHhCCc
Q 008207 408 GKFMTLVATNVAARGLDINDVQLIIQCEPP------RDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVK 480 (574)
Q Consensus 408 g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p------~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~ 480 (574)
|.++|||||+++++|+|+|++++||+||+| .+...|+||+||+||.|+.|.+++|+++. ...+..+++.++.+
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999 89999999999999999999999999988 67889999999999
Q ss_pred ceecCCCCHHHH
Q 008207 481 FEHISAPQPADI 492 (574)
Q Consensus 481 ~~~~~~~~~~~i 492 (574)
++++..+..+++
T Consensus 163 ~~~~~~~~~~~~ 174 (175)
T 2rb4_A 163 IKQLNAEDMDEI 174 (175)
T ss_dssp CEEECSSCCC--
T ss_pred ccccCCchhccc
Confidence 999888765543
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=1.1e-27 Score=218.65 Aligned_cols=152 Identities=23% Similarity=0.409 Sum_probs=139.8
Q ss_pred ccceeEEEEeCCchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCC
Q 008207 334 STNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409 (574)
Q Consensus 334 ~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~ 409 (574)
..++.|.++.+....|...|..++... .++++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|.
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 457889999999999999999999876 56799999999999999999986 6778999999999999999999999
Q ss_pred ccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC--chHHHHHHHHhCCcceecCC
Q 008207 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERESGVKFEHISA 486 (574)
Q Consensus 410 ~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~--~~~~~~i~~~~~~~~~~~~~ 486 (574)
.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. ...+..+++.++.++++++.
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 160 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC-
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCCh
Confidence 999999999999999999999999999999999999999999999999999999986 56788999999999987754
No 82
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=4e-27 Score=213.64 Aligned_cols=152 Identities=26% Similarity=0.501 Sum_probs=134.0
Q ss_pred cceeEEEEeCCchh-hhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCC
Q 008207 335 TNVRHIVLPCSSSA-RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409 (574)
Q Consensus 335 ~~i~~~~~~~~~~~-~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~ 409 (574)
.++.|.++.+.... |...|..++... .++++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|+
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS 80 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 35788888888777 999999999876 56899999999999999999986 5778999999999999999999999
Q ss_pred ccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHHhCCcceecCCC
Q 008207 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487 (574)
Q Consensus 410 ~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~~ 487 (574)
.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.|++|+++. ...+..+++.++..++.++.+
T Consensus 81 ~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 81 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 159 (165)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSC
T ss_pred CEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCcc
Confidence 999999999999999999999999999999999999999999999999999999988 678889999999998887654
No 83
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.94 E-value=6.3e-27 Score=217.01 Aligned_cols=160 Identities=29% Similarity=0.418 Sum_probs=126.0
Q ss_pred HHhcccCCeEEEEecCcccccccceeEEEEeCCchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCcc
Q 008207 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARA 388 (574)
Q Consensus 313 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~ 388 (574)
..|+ .+|..|.+... .....++.|.++.+....|...|..++... ++++||||+++..++.++..|. .+..
T Consensus 9 ~~~~-~~p~~i~v~~~--~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~ 83 (191)
T 2p6n_A 9 SGVD-LGTENLYFQSM--GAASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVA 83 (191)
T ss_dssp ----------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEE
T ss_pred cccc-CCCEEEEECCC--CCCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 4456 45666655433 256678999999999999999999888763 4689999999999999999986 6778
Q ss_pred ccccCCHHHHHHHHHHHhCCCccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC--
Q 008207 389 LHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-- 466 (574)
Q Consensus 389 lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-- 466 (574)
+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++.
T Consensus 84 lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~ 163 (191)
T 2p6n_A 84 IHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACD 163 (191)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSC
T ss_pred EeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred chHHHHHHHHh
Q 008207 467 KSSVSKIERES 477 (574)
Q Consensus 467 ~~~~~~i~~~~ 477 (574)
...+..+++.+
T Consensus 164 ~~~~~~l~~~l 174 (191)
T 2p6n_A 164 ESVLMDLKALL 174 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44555666554
No 84
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=6.2e-27 Score=216.12 Aligned_cols=148 Identities=38% Similarity=0.574 Sum_probs=121.8
Q ss_pred ccccceeEEEEeCCchhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhC
Q 008207 332 KASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407 (574)
Q Consensus 332 ~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~ 407 (574)
....++.|.++.+....|...|..++.....++++||||+++..++.++..|. .+..+||++++.+|..+++.|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 45678999999999999999999999887677899999999999999999986 67789999999999999999999
Q ss_pred CCccEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHHhCC
Q 008207 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGV 479 (574)
Q Consensus 408 g~~~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~~~~ 479 (574)
|+++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.|++|+++. ...+..+++.++.
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 167 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 167 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHH
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999988 6677777776643
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.87 E-value=4.7e-27 Score=214.26 Aligned_cols=150 Identities=27% Similarity=0.475 Sum_probs=135.6
Q ss_pred ceeEEEEeCCc-hhhhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCc
Q 008207 336 NVRHIVLPCSS-SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410 (574)
Q Consensus 336 ~i~~~~~~~~~-~~~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~ 410 (574)
++.|.++.++. ..|...|..++... .++++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|+.
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 56777777777 88888888888764 56799999999999999999997 67789999999999999999999999
Q ss_pred cEEEEeccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceEEEEECCC-chHHHHHHHHhCCcceecCC
Q 008207 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISA 486 (574)
Q Consensus 411 ~vLvaTd~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~ 486 (574)
+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. ...+..+++.++..++....
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVI 158 (170)
Confidence 99999999999999999999999999999999999999999999999999999987 67788888888777765443
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.92 E-value=5.2e-25 Score=208.92 Aligned_cols=169 Identities=19% Similarity=0.195 Sum_probs=122.9
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHH-HHH
Q 008207 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ-VHE 205 (574)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Q-v~~ 205 (574)
.+...|+|+|.++++.++.++++++.+|||+|||++|+++++..+..... ...+.++||++|+++|+.| +.+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~-------~~~~~~~lil~p~~~L~~q~~~~ 101 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK-------ASEPGKVIVLVNKVLLVEQLFRK 101 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH-------TTCCCCEEEEESSHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc-------ccCCCcEEEEECHHHHHHHHHHH
Confidence 35568999999999999999999999999999999999999887654211 0124469999999999999 788
Q ss_pred HHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCC------ccCCCceEEEecCchhhhcCCcH
Q 008207 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN------IDLSSLKFRVLDEADEMLRMGFV 279 (574)
Q Consensus 206 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~------~~l~~~~~lVlDEah~~l~~~~~ 279 (574)
.+..+... ++.+..++|+.........+..+++|+|+||++|.+++.+.. +.+.++++||+||||++.+.+++
T Consensus 102 ~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~ 180 (216)
T 3b6e_A 102 EFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVY 180 (216)
T ss_dssp THHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CH
T ss_pred HHHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcH
Confidence 88888754 688888888876554444444569999999999999887743 56788999999999999877766
Q ss_pred HHHHHH-HHhc-c----------CccCceEEEEecc
Q 008207 280 EDVELI-LGKV-E----------DANKVQTLLFSAT 303 (574)
Q Consensus 280 ~~~~~i-l~~l-~----------~~~~~q~ll~SAT 303 (574)
..+... +... . ..+.+++++||||
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 181 NNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 665332 2211 1 1136799999998
No 87
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.91 E-value=5.6e-24 Score=204.58 Aligned_cols=178 Identities=17% Similarity=0.227 Sum_probs=134.0
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCc
Q 008207 117 SVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT 196 (574)
Q Consensus 117 ~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Pt 196 (574)
++.+.+.+.......++++|.++++.+..|++++++|+||||||+++.+++++.+..... ...+++++++|+
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~--------~~~~~~l~~~p~ 118 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR--------AAECNIVVTQPR 118 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC--------GGGCEEEEEESS
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC--------CCceEEEEeccc
Confidence 444555555556667899999999999999999999999999999999999887654321 234579999999
Q ss_pred HHHHHHHHHHHHHh-hCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhh-h
Q 008207 197 RELAKQVHEDFDVY-GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM-L 274 (574)
Q Consensus 197 reLa~Qv~~~~~~~-~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~-l 274 (574)
|+|+.|+++.+... +...+..+........ .....+++|+|+|||+|++++.+ .++++++||+||||++ +
T Consensus 119 ~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~ 190 (235)
T 3llm_A 119 RISAVSVAERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDI 190 (235)
T ss_dssp HHHHHHHHHHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCH
T ss_pred hHHHHHHHHHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCc
Confidence 99999999888644 3333444433222111 11124589999999999999976 4889999999999996 7
Q ss_pred cCCcH-HHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhc
Q 008207 275 RMGFV-EDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (574)
Q Consensus 275 ~~~~~-~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~ 316 (574)
+++|. ..+..++...+ ++|+++||||++... ...|+
T Consensus 191 ~~~~~~~~l~~i~~~~~---~~~~il~SAT~~~~~---~~~~~ 227 (235)
T 3llm_A 191 NTDFLLVVLRDVVQAYP---EVRIVLMSATIDTSM---FCEYF 227 (235)
T ss_dssp HHHHHHHHHHHHHHHCT---TSEEEEEECSSCCHH---HHHHT
T ss_pred chHHHHHHHHHHHhhCC---CCeEEEEecCCCHHH---HHHHc
Confidence 77776 45666666654 589999999999865 44555
No 88
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.91 E-value=2.6e-23 Score=223.77 Aligned_cols=300 Identities=18% Similarity=0.186 Sum_probs=170.8
Q ss_pred CCCCCCcHHHHHHHH----HHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHH
Q 008207 127 KGIESLFPIQAMTFD----MVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ 202 (574)
Q Consensus 127 ~g~~~~~~~Q~~~i~----~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Q 202 (574)
.|| .|+|+|.+++. .+..|+++++.||||+|||++|++|++.. +.+++|++||++|+.|
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~----------------~~~~~~~~~t~~l~~q 66 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL----------------KKKVLIFTRTHSQLDS 66 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH----------------TCEEEEEESCHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC----------------CCcEEEEcCCHHHHHH
Confidence 467 89999999865 45689999999999999999999999753 1359999999999999
Q ss_pred HHHHHHHhhCCCCceEEEEeCCcch--------H---------------------------------------HHHHHhc
Q 008207 203 VHEDFDVYGGAVGLTSCCLYGGAPY--------H---------------------------------------AQEFKLK 235 (574)
Q Consensus 203 v~~~~~~~~~~~~~~~~~~~gg~~~--------~---------------------------------------~~~~~l~ 235 (574)
+.+++..+ ++++..+.|.... . ...+...
T Consensus 67 ~~~~~~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~ 142 (540)
T 2vl7_A 67 IYKNAKLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANL 142 (540)
T ss_dssp HHHHHGGG----TCCEEEC---------------------------------------------------------CTTG
T ss_pred HHHHHHhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHh
Confidence 99888764 3455444443210 0 0001112
Q ss_pred CCCcEEEEChHHHHHhHhcCCc-------cCCCceEEEecCchhhhcCC-----------cHH-----------------
Q 008207 236 KGIDVVIGTPGRIKDHIERGNI-------DLSSLKFRVLDEADEMLRMG-----------FVE----------------- 280 (574)
Q Consensus 236 ~~~~IlV~Tp~~l~~~l~~~~~-------~l~~~~~lVlDEah~~l~~~-----------~~~----------------- 280 (574)
..++|||+|+..|++...++.+ .+....++||||||.|.+.. +..
T Consensus 143 ~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~ 222 (540)
T 2vl7_A 143 KDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAK 222 (540)
T ss_dssp GGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred hcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHH
Confidence 3579999999999986654322 24567899999999984310 000
Q ss_pred -------------------------------------HHHHHHHhc---------------------------------c
Q 008207 281 -------------------------------------DVELILGKV---------------------------------E 290 (574)
Q Consensus 281 -------------------------------------~~~~il~~l---------------------------------~ 290 (574)
.+..++..+ .
T Consensus 223 ~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~ 302 (540)
T 2vl7_A 223 KVKDYINLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLV 302 (540)
T ss_dssp HHHHHHHHHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEE
Confidence 000000000 0
Q ss_pred Ccc---------Cce----EEEEeccCchhHHHHHHHhcccCCeE-EEEecCcccccccceeEEEEe----CCchh----
Q 008207 291 DAN---------KVQ----TLLFSATLPSWVKHISTKFLKSDKKT-IDLVGNEKMKASTNVRHIVLP----CSSSA---- 348 (574)
Q Consensus 291 ~~~---------~~q----~ll~SAT~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~i~~~~~~----~~~~~---- 348 (574)
-.| ... +|++||||++.. .+ ...+ ..+.. . ....+.+.. .+...
T Consensus 303 ~~P~~~~~~l~~~~~~~~~~IltSATL~p~~-~~-------~~~f~~~~~~-~-----~g~~~~~~~~~l~s~f~~r~~~ 368 (540)
T 2vl7_A 303 KVPSDVNQLIEDALNVKTFKVLMSGTLPESL-TL-------TNSYKIVVNE-S-----YGRGEYYYCPNVTSELRKRNSN 368 (540)
T ss_dssp EECSCHHHHHHHHTCCSSCEEEEESSCCTTC-CC-------TTEEEEECCC-C------CCCEEEECTTCCCCGGGHHHH
T ss_pred EehHHHHHHHHHhcCccCCeEEEcccCCCCc-cc-------chhcCCchhh-e-----ecCCcceeccccCCCcccccCH
Confidence 000 012 377777776610 00 0111 11100 0 011111111 11111
Q ss_pred ---hhhhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCCCCc-cccccCCHHHHHHHHHHHhCCCccEEE--Eecccccc
Q 008207 349 ---RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-ALHGDIQQSQREVTLAGFRSGKFMTLV--ATNVAARG 422 (574)
Q Consensus 349 ---~~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~~~-~lh~~~~~~~r~~~~~~F~~g~~~vLv--aTd~~~~G 422 (574)
....+..++. ..++++|||++|....+.++..+.... ..+|.. ..|..+++.|+.+. .||+ +|+.+++|
T Consensus 369 ~~~~~~~l~~~~~--~~~g~~lvff~S~~~~~~v~~~l~~~~~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EG 443 (540)
T 2vl7_A 369 IPIYSILLKRIYE--NSSKSVLVFFPSYEMLESVRIHLSGIPVIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEG 443 (540)
T ss_dssp HHHHHHHHHHHHH--TCSSEEEEEESCHHHHHHHHTTCTTSCEEESTTT--CCHHHHHHHHHTSC-CEEEEEC-------
T ss_pred HHHHHHHHHHHHH--hCCCCEEEEeCCHHHHHHHHHHhccCceEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecc
Confidence 1112222222 256799999999999999999987432 334433 47889999999865 6777 88999999
Q ss_pred CCCCC----CcEEEEeCCCCC----H--------------------------hHHHHHhcccccCCCcceEEEEECCC
Q 008207 423 LDIND----VQLIIQCEPPRD----V--------------------------EAYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 423 ldi~~----v~~VI~~d~p~s----~--------------------------~~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
||+|+ +++||++++|.. + ....|.+||.-|....--++++++++
T Consensus 444 iD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~R 521 (540)
T 2vl7_A 444 VEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDSR 521 (540)
T ss_dssp --------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESGG
T ss_pred eecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEccc
Confidence 99998 899999999842 1 23458999999986543456667765
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.88 E-value=2.2e-20 Score=201.80 Aligned_cols=311 Identities=17% Similarity=0.141 Sum_probs=200.4
Q ss_pred CCcHHHHHHHHH----HhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHH
Q 008207 131 SLFPIQAMTFDM----VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (574)
Q Consensus 131 ~~~~~Q~~~i~~----il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (574)
.++|.|.+++.. +..|+++++.||||+|||++|++|++.. +++++|++||++|+.|+.++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~----------------~~~v~i~~pt~~l~~q~~~~ 66 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV----------------KPKVLFVVRTHNEFYPIYRD 66 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH----------------CSEEEEEESSGGGHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC----------------CCeEEEEcCCHHHHHHHHHH
Confidence 789999987764 4589999999999999999999999971 23699999999999999999
Q ss_pred HHHhhCCCCceEEEEeCCcch---------------------------------HHHH------------------HHhc
Q 008207 207 FDVYGGAVGLTSCCLYGGAPY---------------------------------HAQE------------------FKLK 235 (574)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~---------------------------------~~~~------------------~~l~ 235 (574)
+..+....++++..+.|+.++ .... +...
T Consensus 67 ~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~ 146 (551)
T 3crv_A 67 LTKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSL 146 (551)
T ss_dssp HTTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHG
T ss_pred HHHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhh
Confidence 998877778888888875432 1111 2233
Q ss_pred CCCcEEEEChHHHHHhHhcCCccC-CCceEEEecCchhhhcCC-------------------------------------
Q 008207 236 KGIDVVIGTPGRIKDHIERGNIDL-SSLKFRVLDEADEMLRMG------------------------------------- 277 (574)
Q Consensus 236 ~~~~IlV~Tp~~l~~~l~~~~~~l-~~~~~lVlDEah~~l~~~------------------------------------- 277 (574)
..++|||+||+.|++...+..+.+ ....+|||||||.|.+ .
T Consensus 147 ~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~ 225 (551)
T 3crv_A 147 YKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLR 225 (551)
T ss_dssp GGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred hcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999876654433 4678999999999765 1
Q ss_pred ------------------cHHHHHHHH----------------------------Hh--------------c---cC---
Q 008207 278 ------------------FVEDVELIL----------------------------GK--------------V---ED--- 291 (574)
Q Consensus 278 ------------------~~~~~~~il----------------------------~~--------------l---~~--- 291 (574)
+...+..+. .. + +-
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~ 305 (551)
T 3crv_A 226 EVVLPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEIS 305 (551)
T ss_dssp TSCCSCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTH
T ss_pred HHhhccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHH
Confidence 011111110 00 0 00
Q ss_pred ------ccC-ceEEEEeccCchhHHHHHHHhcccCCeEE----EEecCcccccccceeEEEEeCCc----h----hhhhh
Q 008207 292 ------ANK-VQTLLFSATLPSWVKHISTKFLKSDKKTI----DLVGNEKMKASTNVRHIVLPCSS----S----ARSQV 352 (574)
Q Consensus 292 ------~~~-~q~ll~SAT~~~~~~~~~~~~~~~~~~~i----~~~~~~~~~~~~~i~~~~~~~~~----~----~~~~~ 352 (574)
... ..+|++|||+.+ ...+... +.-..... .+.-.. .. . .-..++++..- . .....
T Consensus 306 ~~l~~~~~~~~svIltSaTL~~-~~~~~~~-lGl~~~~~~~~~~~~~~s-pf-~-~~~~l~v~~~~~~~~~~r~~~~~~~ 380 (551)
T 3crv_A 306 YYLNLLNDNELSIILMSGTLPP-REYMEKV-WGIKRNMLYLDVEREIQK-RV-S-GSYECYIGVDVTSKYDMRSDNMWKR 380 (551)
T ss_dssp HHHGGGGCTTCEEEEEESSCCC-HHHHHHT-SCCCSCEEEEEHHHHTTS-CC-S-CEEEEEEECSCCCCTTTCCHHHHHH
T ss_pred HHHHHHhccCceEEEEeeCCCc-HHHHHHH-hCCCCccccccceeecCC-cC-C-CceEEEEeCCCCCccccCCHHHHHH
Confidence 012 588999999987 3333333 32221111 000011 11 1 22223333211 1 11122
Q ss_pred hhHHHHh--hcCCCeEEEEecChHHHHHHHHhCCCCccccc-cCCHHHHHHHHHHHhCCCccEEEEe--ccccccCCCC-
Q 008207 353 IPDIIRC--YSSGGRTIIFTETKESASQLADLLPGARALHG-DIQQSQREVTLAGFRSGKFMTLVAT--NVAARGLDIN- 426 (574)
Q Consensus 353 l~~ll~~--~~~~~~~lVF~~t~~~~~~l~~~l~~~~~lh~-~~~~~~r~~~~~~F~~g~~~vLvaT--d~~~~Gldi~- 426 (574)
+...+.. ...++.+|||++|....+.++..+..-....+ +++ +...++.|+.+.-.||+|| ..+..|||+|
T Consensus 381 l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d 457 (551)
T 3crv_A 381 YADYLLKIYFQAKANVLVVFPSYEIMDRVMSRISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRN 457 (551)
T ss_dssp HHHHHHHHHHHCSSEEEEEESCHHHHHHHHTTCCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEE
T ss_pred HHHHHHHHHHhCCCCEEEEecCHHHHHHHHHhcCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccc
Confidence 2222221 12567999999999999999986532222233 333 4567788854444899998 6899999999
Q ss_pred ----CCcEEEEeCCCCC---------------------H-h--------HHHHHhcccccCCCcceEEEEECCC
Q 008207 427 ----DVQLIIQCEPPRD---------------------V-E--------AYIHRSGRTGRAGNTGVAVMLYDPR 466 (574)
Q Consensus 427 ----~v~~VI~~d~p~s---------------------~-~--------~yiqr~GR~gR~g~~G~~i~l~~~~ 466 (574)
.++.||..++|.. + . ...|.+||.-|....--++.+++++
T Consensus 458 ~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 458 NDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp TTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred cCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 4788998887741 1 1 1248889999986655567777776
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.87 E-value=1.8e-22 Score=199.62 Aligned_cols=155 Identities=20% Similarity=0.129 Sum_probs=127.0
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHH
Q 008207 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (574)
..|+|+|.++++.++.+++.+++++||+|||+++++++...+..+. .++||++||++|+.|+.+++..
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~------------~~~lil~Pt~~L~~q~~~~l~~ 179 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE------------GKILIIVPTTALTTQMADDFVD 179 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCS------------SEEEEECSSHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCC------------CeEEEEECCHHHHHHHHHHHHH
Confidence 3899999999999998889999999999999999988887665321 2599999999999999999999
Q ss_pred hhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHhc
Q 008207 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289 (574)
Q Consensus 210 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l 289 (574)
++...+..+..++||..... ....+.+|+|+||+++.... ...+.++++||+||||++.. ..+..++..+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~---~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~ 249 (282)
T 1rif_A 180 YRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP---KEWFSQFGMMMNDECHLATG----KSISSIISGL 249 (282)
T ss_dssp HTSCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC---GGGGGGEEEEEEETGGGCCH----HHHHHHTTTC
T ss_pred hcccccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhH---HHHHhhCCEEEEECCccCCc----ccHHHHHHHh
Confidence 98777788888888875432 23356899999999886542 23467899999999999873 4677777777
Q ss_pred cCccCceEEEEeccCchhH
Q 008207 290 EDANKVQTLLFSATLPSWV 308 (574)
Q Consensus 290 ~~~~~~q~ll~SAT~~~~~ 308 (574)
.. ..++++||||++...
T Consensus 250 ~~--~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 250 NN--CMFKFGLSGSLRDGK 266 (282)
T ss_dssp TT--CCEEEEECSSCCTTS
T ss_pred hc--CCeEEEEeCCCCCcc
Confidence 55 679999999998654
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.80 E-value=8.9e-19 Score=168.09 Aligned_cols=138 Identities=21% Similarity=0.161 Sum_probs=111.3
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHH
Q 008207 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (574)
..|+++|.++++.++.+++++++++||+|||++++.++... . .++||++|+++|+.|+.+.+..
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---~-------------~~~liv~P~~~L~~q~~~~~~~ 155 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---S-------------TPTLIVVPTLALAEQWKERLGI 155 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---C-------------SCEEEEESSHHHHHHHHHHHGG
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc---C-------------CCEEEEeCCHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999988887653 1 1489999999999999999877
Q ss_pred hhCCCCce-EEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHh
Q 008207 210 YGGAVGLT-SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (574)
Q Consensus 210 ~~~~~~~~-~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~ 288 (574)
+ ++. +..+.|+.. ...+|+|+||+.+...+.. ....+++|||||||++.+..+. .++..
T Consensus 156 ~----~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~~----~i~~~ 215 (237)
T 2fz4_A 156 F----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYV----QIAQM 215 (237)
T ss_dssp G----CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTHH----HHHHT
T ss_pred C----CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHHH----HHHHh
Confidence 4 567 777777654 2489999999999876652 1345899999999999776643 35555
Q ss_pred ccCccCceEEEEeccCch
Q 008207 289 VEDANKVQTLLFSATLPS 306 (574)
Q Consensus 289 l~~~~~~q~ll~SAT~~~ 306 (574)
++ ..++++||||++.
T Consensus 216 ~~---~~~~l~LSATp~r 230 (237)
T 2fz4_A 216 SI---APFRLGLTATFER 230 (237)
T ss_dssp CC---CSEEEEEEESCC-
T ss_pred cc---CCEEEEEecCCCC
Confidence 54 4688999999875
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.77 E-value=2.3e-17 Score=179.59 Aligned_cols=84 Identities=18% Similarity=0.181 Sum_probs=69.3
Q ss_pred CCCcHHHHHHHH----HHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHH
Q 008207 130 ESLFPIQAMTFD----MVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (574)
Q Consensus 130 ~~~~~~Q~~~i~----~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~ 205 (574)
..|+|.|.+.+. .+.+|+++++.||||+|||++|++|++..+... +.+++|++||++|+.|+.+
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~------------~~kvli~t~T~~l~~Qi~~ 69 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER------------KLKVLYLVRTNSQEEQVIK 69 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH------------TCEEEEEESSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc------------CCeEEEECCCHHHHHHHHH
Confidence 368999998875 456899999999999999999999999887532 2369999999999999999
Q ss_pred HHHHhhCCCCceEEEEeCCc
Q 008207 206 DFDVYGGAVGLTSCCLYGGA 225 (574)
Q Consensus 206 ~~~~~~~~~~~~~~~~~gg~ 225 (574)
++..+....++++..++|+.
T Consensus 70 el~~l~~~~~~~~~~l~gr~ 89 (620)
T 4a15_A 70 ELRSLSSTMKIRAIPMQGRV 89 (620)
T ss_dssp HHHHHHHHSCCCEEECCCHH
T ss_pred HHHHHhhccCeEEEEEECCC
Confidence 99988776678888777754
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.76 E-value=2e-18 Score=168.59 Aligned_cols=122 Identities=15% Similarity=0.235 Sum_probs=94.4
Q ss_pred CchhhhhhhhHHHHhh-cCCCeEEEEecChHHHHHHHHhCC-----CCccccccCCHHHHHHHHHHHhCC-Ccc-EEEEe
Q 008207 345 SSSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSG-KFM-TLVAT 416 (574)
Q Consensus 345 ~~~~~~~~l~~ll~~~-~~~~~~lVF~~t~~~~~~l~~~l~-----~~~~lh~~~~~~~r~~~~~~F~~g-~~~-vLvaT 416 (574)
....|...+..++... ..+.++||||++...++.+...|. .+..+||++++.+|..+++.|++| .++ +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 4567788888887654 367899999999999999998874 567899999999999999999998 777 78999
Q ss_pred ccccccCCCCCCcEEEEeCCCCCHhHHHHHhcccccCCCcceE--EEEECCC
Q 008207 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA--VMLYDPR 466 (574)
Q Consensus 417 d~~~~Gldi~~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~G~~--i~l~~~~ 466 (574)
+++++|||++++++||+||+||++..|+||+||++|.|+.+.+ |.|+...
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 9999999999999999999999999999999999999987754 6777765
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.97 E-value=2.1e-09 Score=116.78 Aligned_cols=144 Identities=19% Similarity=0.230 Sum_probs=90.1
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCCChhH--HHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHh
Q 008207 133 FPIQAMTFDMVLDGSDLVGRARTGQGKT--LAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (574)
Q Consensus 133 ~~~Q~~~i~~il~~~dvi~~a~TGsGKT--la~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (574)
+++|..+++.++.++++++.|++||||| ++++++.+..+... .+.++++++||..+|.++.+.+..+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~-----------~~~~vll~APTg~AA~~L~e~~~~~ 219 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG-----------ERCRIRLAAPTGKAAARLTESLGKA 219 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSS-----------CCCCEEEEBSSHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhc-----------CCCeEEEEeCChhHHHHHHHHHHHH
Confidence 7899999999999999999999999999 66778877655221 2346999999999999999887655
Q ss_pred hCCCCceEEEEeCCcchHHHHHHhcCCCc-EEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHhc
Q 008207 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGID-VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289 (574)
Q Consensus 211 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~-IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l 289 (574)
+...++..... .+... + ....+ ++-.+|+.. . +.........+++||||||+ |++ ...+..++..+
T Consensus 220 ~~~l~l~~~~~-~~~~~--~----~~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l 286 (608)
T 1w36_D 220 LRQLPLTDEQK-KRIPE--D----ASTLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDAL 286 (608)
T ss_dssp HHHSSCCSCCC-CSCSC--C----CBTTTSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTC
T ss_pred HhcCCCCHHHH-hccch--h----hhhhHhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhC
Confidence 44333221100 00000 0 00011 222233321 1 11111122378999999999 555 56778888888
Q ss_pred cCccCceEEEEec
Q 008207 290 EDANKVQTLLFSA 302 (574)
Q Consensus 290 ~~~~~~q~ll~SA 302 (574)
+. ..|++++-=
T Consensus 287 ~~--~~~liLvGD 297 (608)
T 1w36_D 287 PD--HARVIFLGD 297 (608)
T ss_dssp CT--TCEEEEEEC
T ss_pred CC--CCEEEEEcc
Confidence 76 678887743
No 95
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.13 E-value=1.3e-05 Score=85.98 Aligned_cols=124 Identities=19% Similarity=0.178 Sum_probs=77.6
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHh
Q 008207 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (574)
Q Consensus 131 ~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (574)
.+++.|..++..++.++.+++.|+.|||||.... .++..+... +.++++++||...+.++.+.+.
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~-~l~~~l~~~------------g~~Vl~~ApT~~Aa~~L~e~~~-- 253 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTK-AVADLAESL------------GLEVGLCAPTGKAARRLGEVTG-- 253 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHH-HHHHHHHHT------------TCCEEEEESSHHHHHHHHHHHT--
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHH-HHHHHHHhc------------CCeEEEecCcHHHHHHhHhhhc--
Confidence 6899999999999999999999999999997632 333333321 2248999999998887765431
Q ss_pred hCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHhcc
Q 008207 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290 (574)
Q Consensus 211 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~ 290 (574)
.....+ .. .+. . .|. .+.........+++||||||+.+. ...+..++..++
T Consensus 254 -----~~a~Ti------h~---ll~----~---~~~----~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~ 304 (574)
T 3e1s_A 254 -----RTASTV------HR---LLG----Y---GPQ----GFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVP 304 (574)
T ss_dssp -----SCEEEH------HH---HTT----E---ETT----EESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSC
T ss_pred -----ccHHHH------HH---HHc----C---Ccc----hhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCc
Confidence 111111 00 000 0 000 011112234467899999999653 456677777776
Q ss_pred CccCceEEEE
Q 008207 291 DANKVQTLLF 300 (574)
Q Consensus 291 ~~~~~q~ll~ 300 (574)
. ..+++++
T Consensus 305 ~--~~~lilv 312 (574)
T 3e1s_A 305 P--GARVLLV 312 (574)
T ss_dssp T--TCEEEEE
T ss_pred C--CCEEEEE
Confidence 4 4455554
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.12 E-value=7.6e-06 Score=89.75 Aligned_cols=67 Identities=22% Similarity=0.262 Sum_probs=53.6
Q ss_pred CCcHHHHHHHHHHhcCCc-EEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHH
Q 008207 131 SLFPIQAMTFDMVLDGSD-LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (574)
Q Consensus 131 ~~~~~Q~~~i~~il~~~d-vi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (574)
.+.+-|.+|+..++..++ .|++||+|||||.+.+-.+.+.+..+ .++|+++||..-+.++.+.+..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~-------------~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQG-------------LKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTT-------------CCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCC-------------CeEEEEcCchHHHHHHHHHHHh
Confidence 467899999999887665 78999999999988665555555433 2599999999999999888765
Q ss_pred h
Q 008207 210 Y 210 (574)
Q Consensus 210 ~ 210 (574)
.
T Consensus 256 ~ 256 (646)
T 4b3f_X 256 C 256 (646)
T ss_dssp T
T ss_pred c
Confidence 4
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.10 E-value=2.1e-05 Score=82.57 Aligned_cols=72 Identities=18% Similarity=0.194 Sum_probs=50.6
Q ss_pred HHHCCCCCCcHHHHHHHHHHhcC-----CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHH
Q 008207 124 LKSKGIESLFPIQAMTFDMVLDG-----SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE 198 (574)
Q Consensus 124 l~~~g~~~~~~~Q~~~i~~il~~-----~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptre 198 (574)
..-+.|..+++-|.+++..++.. ..+++.|+.|||||.+. ..++..+..... .++++++||..
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~~-----------~~il~~a~T~~ 85 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTGE-----------TGIILAAPTHA 85 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTTC-----------CCEEEEESSHH
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcCC-----------ceEEEecCcHH
Confidence 34567899999999999877532 38999999999999764 344444433211 14899999988
Q ss_pred HHHHHHHHH
Q 008207 199 LAKQVHEDF 207 (574)
Q Consensus 199 La~Qv~~~~ 207 (574)
.|..+.+.+
T Consensus 86 Aa~~l~~~~ 94 (459)
T 3upu_A 86 AKKILSKLS 94 (459)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 887666544
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.03 E-value=3.6e-05 Score=83.84 Aligned_cols=70 Identities=23% Similarity=0.222 Sum_probs=54.2
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHH
Q 008207 129 IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (574)
Q Consensus 129 ~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~ 208 (574)
+..+++.|.+++..++.+.-+++.||+|||||.+..- ++..+... .+.++|+++||...+.++.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~~-----------~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ-----------GNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHTS-----------SSCCEEEEESSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHHc-----------CCCeEEEEeCcHHHHHHHHHHHH
Confidence 3467899999999999888899999999999987543 33444331 12259999999999999988876
Q ss_pred Hh
Q 008207 209 VY 210 (574)
Q Consensus 209 ~~ 210 (574)
..
T Consensus 246 ~~ 247 (624)
T 2gk6_A 246 QT 247 (624)
T ss_dssp TT
T ss_pred hc
Confidence 54
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.95 E-value=4e-05 Score=85.49 Aligned_cols=69 Identities=16% Similarity=0.128 Sum_probs=53.2
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHH
Q 008207 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (574)
..+++.|.+++..++.+.-+++.||+|||||.+..--+...+... +.++|+++||...+.++.+.+..
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~------------~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIH------------KDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHH------------CCCEEEEESSHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCC------------CCeEEEEcCcHHHHHHHHHHHHh
Confidence 356799999999998887899999999999986543333222211 12499999999999999988876
Q ss_pred h
Q 008207 210 Y 210 (574)
Q Consensus 210 ~ 210 (574)
.
T Consensus 427 ~ 427 (802)
T 2xzl_A 427 L 427 (802)
T ss_dssp T
T ss_pred h
Confidence 5
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.85 E-value=9.4e-05 Score=82.42 Aligned_cols=69 Identities=23% Similarity=0.215 Sum_probs=53.3
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHH
Q 008207 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (574)
..+++.|.+++..++.+.-.++.||+|||||.+.. .++..+.... +.++|+++||...+.++.+.+..
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~~-----------~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQG-----------NGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTTC-----------SSCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHcC-----------CCcEEEEcCcHHHHHHHHHHHHH
Confidence 35689999999999988889999999999998744 3444444321 22599999999999999888764
Q ss_pred h
Q 008207 210 Y 210 (574)
Q Consensus 210 ~ 210 (574)
.
T Consensus 423 ~ 423 (800)
T 2wjy_A 423 T 423 (800)
T ss_dssp T
T ss_pred h
Confidence 3
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.67 E-value=0.0017 Score=71.10 Aligned_cols=71 Identities=21% Similarity=0.145 Sum_probs=55.2
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHH
Q 008207 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (574)
..+++-|.+++.. .+..++|.|+.|||||.+..--+...+..... ..-++|++++|+..+.++.+.+..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~---------~~~~iL~ltft~~aa~e~~~rl~~ 76 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENC---------SPYSIMAVTFTNKAAAEMRHRIGQ 76 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCC---------CGGGEEEEESSHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCC---------ChhhEEEEeccHHHHHHHHHHHHH
Confidence 4789999999973 36789999999999999866666655554321 112599999999999999999876
Q ss_pred hh
Q 008207 210 YG 211 (574)
Q Consensus 210 ~~ 211 (574)
+.
T Consensus 77 ~~ 78 (647)
T 3lfu_A 77 LM 78 (647)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 102
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.40 E-value=0.002 Score=65.12 Aligned_cols=71 Identities=13% Similarity=0.038 Sum_probs=55.2
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHh
Q 008207 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (574)
Q Consensus 131 ~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (574)
.|+|+|...+..+...+-+++..+-+.|||.+.+..++..+... .+..+++++|++..|..+.+.+..+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~-----------~g~~v~~vA~t~~qA~~vf~~i~~m 231 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-----------KDKAVGILAHKGSMSAEVLDRTKQA 231 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS-----------SSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC-----------CCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 78999999998775566789999999999998766666544432 2335999999999999888777655
Q ss_pred hC
Q 008207 211 GG 212 (574)
Q Consensus 211 ~~ 212 (574)
..
T Consensus 232 i~ 233 (385)
T 2o0j_A 232 IE 233 (385)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 103
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.19 E-value=0.0017 Score=63.32 Aligned_cols=116 Identities=14% Similarity=0.067 Sum_probs=81.9
Q ss_pred chhhhhhhhHHHHhh-cCCCeEEEEecChHHHHHHHHhCC----CCccccccCCHHHHHHHHHHHhCCCccEEEEecccc
Q 008207 346 SSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420 (574)
Q Consensus 346 ~~~~~~~l~~ll~~~-~~~~~~lVF~~t~~~~~~l~~~l~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~ 420 (574)
.+.|..+|..++... ..+.++|||++.....+-+..++. .+..+.|.... .+.+. .++.+.+.+.|...+
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~-~~~k~----~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIK-SAAAA----NDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchh-hhhhc----ccCCceEEEEECCCC
Confidence 577888888888765 366799999999999999999987 33456676433 22221 245566666676666
Q ss_pred ccCC-----CCCCcEEEEeCCCCCHhHH-HHHhcccccCC--C--cceEEEEECCC
Q 008207 421 RGLD-----INDVQLIIQCEPPRDVEAY-IHRSGRTGRAG--N--TGVAVMLYDPR 466 (574)
Q Consensus 421 ~Gld-----i~~v~~VI~~d~p~s~~~y-iqr~GR~gR~g--~--~G~~i~l~~~~ 466 (574)
-|+| ....+.||.||.-+++..= +|.+-|+.|.| + .-.+|.|++.+
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~ 237 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAIN 237 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETT
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCC
Confidence 6675 6789999999999999885 99888888873 2 34678888877
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.08 E-value=0.0043 Score=67.01 Aligned_cols=120 Identities=12% Similarity=0.113 Sum_probs=77.2
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHh
Q 008207 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (574)
Q Consensus 131 ~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (574)
.|+|+|...+..+...+-+++..+-|+|||.+....++..+...+ +..+++++|++..|..+.+.++.+
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-----------~~~i~~va~t~~qA~~~~~~i~~~ 231 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-----------DKAVGILAHKGSMSAEVLDRTKQA 231 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-----------SCEEEEEESSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC-----------CCeEEEEECCHHHHHHHHHHHHHH
Confidence 589999999987755677999999999999977665555554432 235999999999999999888766
Q ss_pred hCCCC--ceEEEE-eCCcchHHHHHHhcCCCcEEEEC--hHHHHHhHhcCCccCCCceEEEecCchhhhc
Q 008207 211 GGAVG--LTSCCL-YGGAPYHAQEFKLKKGIDVVIGT--PGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275 (574)
Q Consensus 211 ~~~~~--~~~~~~-~gg~~~~~~~~~l~~~~~IlV~T--p~~l~~~l~~~~~~l~~~~~lVlDEah~~l~ 275 (574)
....+ +..... ..... ..+.++..|.+.+ |+.+.- .+..++|+||+|.+-+
T Consensus 232 i~~~p~~~~~~~~~~~~~~-----i~~~nGs~i~~~s~~~~~lrG---------~~~~~~iiDE~~~~~~ 287 (592)
T 3cpe_A 232 IELLPDFLQPGIVEWNKGS-----IELDNGSSIGAYASSPDAVRG---------NSFAMIYIEDCAFIPN 287 (592)
T ss_dssp HTTSCTTTSCCEEEECSSE-----EEETTSCEEEEEECCHHHHHH---------SCCSEEEEETGGGCTT
T ss_pred HHhChHhhccccccCCccE-----EEecCCCEEEEEeCCCCCccC---------CCcceEEEehhccCCc
Confidence 55432 111000 01100 1112344444432 443321 1367899999998743
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.77 E-value=0.0081 Score=53.75 Aligned_cols=19 Identities=32% Similarity=0.330 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
.|+.+++.||+|+|||...
T Consensus 37 ~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp GCCEEEECCSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4788999999999999754
No 106
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.67 E-value=0.00093 Score=60.43 Aligned_cols=39 Identities=21% Similarity=0.054 Sum_probs=26.6
Q ss_pred CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcH
Q 008207 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr 197 (574)
|+-.++.|++|+|||...+--+......+ .+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g-------------~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGK-------------KKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTT-------------CEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCC-------------CeEEEEeecc
Confidence 55678999999999987554444433332 2488888883
No 107
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.60 E-value=0.0079 Score=61.52 Aligned_cols=88 Identities=20% Similarity=0.206 Sum_probs=53.9
Q ss_pred CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcc
Q 008207 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~ 226 (574)
+-.++.|+.|+|||.... +.+.. . +.+|++||++++..+.+.+...+..
T Consensus 162 ~v~~I~G~aGsGKTt~I~----~~~~~-~-------------~~lVlTpT~~aa~~l~~kl~~~~~~------------- 210 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEIL----SRVNF-E-------------EDLILVPGRQAAEMIRRRANASGII------------- 210 (446)
T ss_dssp EEEEEEECTTSCHHHHHH----HHCCT-T-------------TCEEEESCHHHHHHHHHHHTTTSCC-------------
T ss_pred cEEEEEcCCCCCHHHHHH----HHhcc-C-------------CeEEEeCCHHHHHHHHHHhhhcCcc-------------
Confidence 347899999999998542 22211 1 2699999999999888776432100
Q ss_pred hHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCC
Q 008207 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277 (574)
Q Consensus 227 ~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~ 277 (574)
.....-|.|-+.++- .......-..++||||||- |++.+
T Consensus 211 ---------~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~s-m~~~~ 249 (446)
T 3vkw_A 211 ---------VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGL-MLHTG 249 (446)
T ss_dssp ---------CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGG-GSCHH
T ss_pred ---------ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcc-cCCHH
Confidence 012334667666543 1122222347899999998 44544
No 108
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.60 E-value=0.0057 Score=55.43 Aligned_cols=39 Identities=18% Similarity=0.081 Sum_probs=27.0
Q ss_pred CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcH
Q 008207 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr 197 (574)
|+=.++.|++|||||.+.+--+......+. +++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~-------------kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQ-------------KIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTC-------------CEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCC-------------EEEEEEecc
Confidence 455788999999999876554444443332 489999883
No 109
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.49 E-value=0.0062 Score=67.44 Aligned_cols=71 Identities=18% Similarity=0.123 Sum_probs=54.8
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHH
Q 008207 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (574)
..++|-|.+++.. .+..++|.|..|||||.+..--+...+..... ...++|+|+.|+..|.++.+.+..
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~---------~p~~IL~vTFTnkAA~Em~~Rl~~ 78 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHV---------APWNILAITFTNKAAREMRERVQS 78 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCC---------CGGGEEEEESSHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCC---------CHHHeEEEeccHHHHHHHHHHHHH
Confidence 4689999999976 35789999999999999866666655553221 122599999999999999988876
Q ss_pred hh
Q 008207 210 YG 211 (574)
Q Consensus 210 ~~ 211 (574)
+.
T Consensus 79 ~l 80 (724)
T 1pjr_A 79 LL 80 (724)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 110
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.48 E-value=0.0066 Score=56.42 Aligned_cols=91 Identities=15% Similarity=0.030 Sum_probs=52.9
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCC
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg 224 (574)
.|.-+++.|++|+|||.+.+--+......+. +++++.|...-- . ...+....++..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~-------------kVli~~~~~d~r---~--~~~i~srlG~~~------ 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADV-------------KYLVFKPKIDTR---S--IRNIQSRTGTSL------ 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTC-------------CEEEEEECCCGG---G--CSSCCCCCCCSS------
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCC-------------EEEEEEeccCch---H--HHHHHHhcCCCc------
Confidence 4556888999999999876555544444332 388888764210 0 001111111110
Q ss_pred cchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhh
Q 008207 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (574)
Q Consensus 225 ~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~ 273 (574)
..+-+.+...++..+.... .-..+++|||||++.+
T Consensus 67 -------------~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 -------------PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFF 101 (223)
T ss_dssp -------------CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGS
T ss_pred -------------cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccC
Confidence 2234566677777766432 2345799999999965
No 111
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.42 E-value=0.02 Score=56.89 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=27.6
Q ss_pred CcHHHHHHHHHHh----cCC---cEEEEccCCChhHHHhHHHHHHHHh
Q 008207 132 LFPIQAMTFDMVL----DGS---DLVGRARTGQGKTLAFVLPILESLT 172 (574)
Q Consensus 132 ~~~~Q~~~i~~il----~~~---dvi~~a~TGsGKTla~~lpil~~l~ 172 (574)
++|||.+++..+. +|+ -+++.||.|+|||..... +...+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~-la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA-LSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH-HHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH-HHHHHh
Confidence 4788888876654 343 389999999999976443 334443
No 112
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.16 E-value=0.014 Score=53.44 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=27.8
Q ss_pred CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHH
Q 008207 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE 198 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptre 198 (574)
|+=.++.|+.|||||.+.+--+......+. +++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~-------------kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQ-------------HAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTC-------------CEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCC-------------EEEEEEeccC
Confidence 444668999999999886666655554443 4899998853
No 113
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.11 E-value=0.033 Score=54.97 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=15.5
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
+..+++.||+|+|||...
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 468999999999999753
No 114
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.05 E-value=0.0085 Score=65.84 Aligned_cols=80 Identities=20% Similarity=0.163 Sum_probs=57.6
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHh
Q 008207 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (574)
Q Consensus 131 ~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (574)
.++|-|.+++.. .+..++|.|..|||||.+..--+...+..... ...++|+|+.|+..|.++.+.+...
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~---------~~~~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY---------QARHIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC---------CGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCC---------CHHHeEEEeccHHHHHHHHHHHHHH
Confidence 578999999975 36789999999999998766555555543111 1125999999999999999998765
Q ss_pred hCC---CCceEEEE
Q 008207 211 GGA---VGLTSCCL 221 (574)
Q Consensus 211 ~~~---~~~~~~~~ 221 (574)
... .++.+.++
T Consensus 71 l~~~~~~~~~v~Tf 84 (673)
T 1uaa_A 71 LGRKEARGLMISTF 84 (673)
T ss_dssp SCTTTTTTSEEEEH
T ss_pred cCcccccCCEEEeH
Confidence 432 23555444
No 115
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.05 E-value=0.012 Score=63.22 Aligned_cols=113 Identities=14% Similarity=0.134 Sum_probs=74.8
Q ss_pred CCcHHHHHHHHHHhc--CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHH
Q 008207 131 SLFPIQAMTFDMVLD--GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (574)
Q Consensus 131 ~~~~~Q~~~i~~il~--~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~ 208 (574)
.+|.-|.+++..++. ....++.|+-|.|||.+..+.+.... . +++|.+|+.+-+..+.+...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~-~---------------~~~vtAP~~~a~~~l~~~~~ 238 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA-G---------------RAIVTAPAKASTDVLAQFAG 238 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS-S---------------CEEEECSSCCSCHHHHHHHG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH-h---------------CcEEECCCHHHHHHHHHHhh
Confidence 678999999988875 34578999999999977666554332 1 27999999876664433221
Q ss_pred HhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHh
Q 008207 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (574)
Q Consensus 209 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~ 288 (574)
. .|-+..|..+.. .+...++||||||=.+- ...+..++..
T Consensus 239 ~-----------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~~ 278 (671)
T 2zpa_A 239 E-----------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVSR 278 (671)
T ss_dssp G-----------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHTT
T ss_pred C-----------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHhh
Confidence 0 133345655432 24458999999998664 4555555542
Q ss_pred ccCccCceEEEEeccCc
Q 008207 289 VEDANKVQTLLFSATLP 305 (574)
Q Consensus 289 l~~~~~~q~ll~SAT~~ 305 (574)
...++||.|..
T Consensus 279 ------~~~v~~~tTv~ 289 (671)
T 2zpa_A 279 ------FPRTLLTTTVQ 289 (671)
T ss_dssp ------SSEEEEEEEBS
T ss_pred ------CCeEEEEecCC
Confidence 23578888853
No 116
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.049 Score=53.38 Aligned_cols=26 Identities=8% Similarity=-0.038 Sum_probs=19.2
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHH
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESL 171 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l 171 (574)
.+.++++.||+|+|||++.-. ++..+
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~-v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVND-VMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHH-HHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH-HHHHH
Confidence 456899999999999986433 34444
No 117
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.82 E-value=0.047 Score=55.89 Aligned_cols=55 Identities=11% Similarity=0.231 Sum_probs=38.4
Q ss_pred CCceEEEecCchhhh---cCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhc
Q 008207 260 SSLKFRVLDEADEML---RMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (574)
Q Consensus 260 ~~~~~lVlDEah~~l---~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~ 316 (574)
.++++||+|++-++- +..+..++..+...+.. ..-+++++|+........+..|.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~p--d~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKP--DDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCC--SEEEEEEEGGGGGGGHHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCC--cceEEEEeCccchHHHHHHHHHh
Confidence 468899999998643 34466777777776654 45677889987766666665554
No 118
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.80 E-value=0.031 Score=51.12 Aligned_cols=99 Identities=16% Similarity=0.089 Sum_probs=52.5
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCC
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg 224 (574)
.|.=.++.|+.|||||...+--+......+ .+++|+.|...--. . -..+....++..
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g-------------~kvli~kp~~D~R~---~-~~~I~Sr~G~~~------ 83 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAK-------------QKVVVFKPAIDDRY---H-KEKVVSHNGNAI------ 83 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTT-------------CCEEEEEEC---------------CBTTBCC------
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcC-------------CceEEEEeccCCcc---h-hhhHHHhcCCce------
Confidence 455678899999999986544444433332 24899999743110 0 011112222211
Q ss_pred cchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHH
Q 008207 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286 (574)
Q Consensus 225 ~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il 286 (574)
.-+.|..+.-+++.+ ..++++|+||||+-+ +....+.+..+.
T Consensus 84 -------------~a~~v~~~~di~~~i------~~~~dvV~IDEaQFf-~~~~v~~l~~la 125 (219)
T 3e2i_A 84 -------------EAINISKASEIMTHD------LTNVDVIGIDEVQFF-DDEIVSIVEKLS 125 (219)
T ss_dssp -------------EEEEESSGGGGGGSC------CTTCSEEEECCGGGS-CTHHHHHHHHHH
T ss_pred -------------eeEEeCCHHHHHHHH------hcCCCEEEEechhcC-CHHHHHHHHHHH
Confidence 224455544443332 246789999999965 444455555554
No 119
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.69 E-value=0.027 Score=52.53 Aligned_cols=19 Identities=11% Similarity=0.017 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
.++.+++.||+|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999854
No 120
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.50 E-value=0.047 Score=50.52 Aligned_cols=40 Identities=15% Similarity=0.024 Sum_probs=28.7
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcH
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr 197 (574)
.|+=.++.|+.|||||.+.+--+......+. +++++.|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~-------------kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQY-------------KCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTC-------------CEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCC-------------eEEEEeecC
Confidence 3566788999999999876655555544433 489998874
No 121
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.45 E-value=0.0077 Score=52.22 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=16.6
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
.|+.+++.|++|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6888999999999999743
No 122
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.32 E-value=0.087 Score=50.41 Aligned_cols=17 Identities=18% Similarity=0.104 Sum_probs=14.9
Q ss_pred CcEEEEccCCChhHHHh
Q 008207 147 SDLVGRARTGQGKTLAF 163 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (574)
..+++.||+|+|||...
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 56999999999999854
No 123
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.31 E-value=0.028 Score=66.03 Aligned_cols=71 Identities=20% Similarity=0.180 Sum_probs=55.7
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHH
Q 008207 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (574)
Q Consensus 130 ~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (574)
..+|+-|.++|..- +++++|.|..|||||.+.+--++..+..+... ...-++|++++|+..|..+.+.+..
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~-------~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENP-------IDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSC-------CCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCC-------CCccceEEEeccHHHHHHHHHHHHH
Confidence 36899999999764 88999999999999998777777777654211 1222699999999999999888865
No 124
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.30 E-value=0.045 Score=49.25 Aligned_cols=39 Identities=15% Similarity=0.002 Sum_probs=27.8
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCc
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT 196 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Pt 196 (574)
.|+=.++.|++|||||.-.+-.+-+....+. +++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~-------------kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQY-------------KCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTC-------------CEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCC-------------eEEEEccc
Confidence 3566889999999999765555555444432 38999887
No 125
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.10 E-value=0.14 Score=49.95 Aligned_cols=43 Identities=12% Similarity=0.262 Sum_probs=27.1
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEEeccCc
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~ 305 (574)
....+++||||||.|. ......+++.+..+++.-+++|.++-+
T Consensus 80 ~~~~kvviIdead~lt----~~a~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 80 LYTRKYVIVHDCERMT----QQAANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp SSSSEEEEETTGGGBC----HHHHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred cCCceEEEeccHHHhC----HHHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 3457999999999885 334455666665544444555555544
No 126
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.99 E-value=0.073 Score=53.57 Aligned_cols=19 Identities=32% Similarity=0.247 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
.+..+++.||+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3567999999999999753
No 127
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.62 E-value=0.21 Score=51.46 Aligned_cols=18 Identities=28% Similarity=0.182 Sum_probs=15.5
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
...+++.||+|+|||...
T Consensus 130 ~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp SCCEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999853
No 128
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.49 E-value=0.14 Score=50.40 Aligned_cols=29 Identities=17% Similarity=0.077 Sum_probs=17.8
Q ss_pred CCceEEEecCchhhhcCCcHHHHHHHHHh
Q 008207 260 SSLKFRVLDEADEMLRMGFVEDVELILGK 288 (574)
Q Consensus 260 ~~~~~lVlDEah~~l~~~~~~~~~~il~~ 288 (574)
...++|||||+|.+........+..++..
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~ 132 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEA 132 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHh
Confidence 36789999999988512223334444443
No 129
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.48 E-value=0.066 Score=52.23 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=15.4
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
+.++++.||+|+|||...
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457999999999999864
No 130
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.41 E-value=0.3 Score=43.06 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=15.5
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
...+++.|++|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 567999999999999754
No 131
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.39 E-value=0.26 Score=44.51 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=18.4
Q ss_pred CcEEEEccCCChhHHHhHHHHHHHHh
Q 008207 147 SDLVGRARTGQGKTLAFVLPILESLT 172 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~ 172 (574)
+.+++.|++|+|||.... .+...+.
T Consensus 55 ~~~~l~G~~GtGKT~la~-~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA-AIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 789999999999998533 3444443
No 132
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.36 E-value=0.36 Score=43.83 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=14.5
Q ss_pred CcEEEEccCCChhHHHh
Q 008207 147 SDLVGRARTGQGKTLAF 163 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (574)
..+++.|++|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999753
No 133
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.18 E-value=0.81 Score=40.25 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=15.4
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
...+++.|++|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999753
No 134
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.07 E-value=0.28 Score=48.77 Aligned_cols=46 Identities=22% Similarity=0.200 Sum_probs=29.0
Q ss_pred CCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHh
Q 008207 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~ 163 (574)
..|..|+++--.....+.|...-+.. -...++++.||+|+|||...
T Consensus 8 yrP~~~~~~vg~~~~~~~l~~~~~~~------------~~~~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 8 YRPKSLNALSHNEELTNFLKSLSDQP------------RDLPHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp TCCCSGGGCCSCHHHHHHHHTTTTCT------------TCCCCEEEECSTTSSHHHHH
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHhhC------------CCCCeEEEECCCCCCHHHHH
Confidence 34566777666666666665432110 12234999999999999854
No 135
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.92 E-value=0.17 Score=50.85 Aligned_cols=18 Identities=28% Similarity=0.132 Sum_probs=15.2
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
.+.+++.||+|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 356999999999999754
No 136
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.91 E-value=0.75 Score=47.04 Aligned_cols=132 Identities=12% Similarity=0.071 Sum_probs=68.8
Q ss_pred CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEe--CcHHHHHHHHHHHHHhhCCCCceEEEEeCC
Q 008207 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL--PTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~--PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg 224 (574)
.-++++|++|+|||....--+ ..+.... .+++++. |.|.-+ .+.+..++...++.+.....+
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA-~~l~~~G------------~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~~~ 164 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLA-RYFQKRG------------YKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNPQE 164 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHH-HHHHTTT------------CCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCTTC
T ss_pred eEEEEECcCCCCHHHHHHHHH-HHHHHCC------------CeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecCCC
Confidence 458899999999998643333 3333321 1355554 444433 344555555555654433222
Q ss_pred cchHHHHHHhcCCCcEEEEChHHHH-HhHhcCCccCCCceEEEecCchhhhc-CCcHHHHHHHHHhccCccCceEEEEec
Q 008207 225 APYHAQEFKLKKGIDVVIGTPGRIK-DHIERGNIDLSSLKFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSA 302 (574)
Q Consensus 225 ~~~~~~~~~l~~~~~IlV~Tp~~l~-~~l~~~~~~l~~~~~lVlDEah~~l~-~~~~~~~~~il~~l~~~~~~q~ll~SA 302 (574)
.+ |..+. +.+.. .....++++|||.+=++.. ......+..+...... ..-+++++|
T Consensus 165 ~d------------------p~~i~~~al~~--a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~p--d~vlLVvDA 222 (443)
T 3dm5_A 165 KD------------------AIKLAKEGVDY--FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHP--HEVILVIDG 222 (443)
T ss_dssp CC------------------HHHHHHHHHHH--HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCC--SEEEEEEEG
T ss_pred CC------------------HHHHHHHHHHH--HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcC--ceEEEEEeC
Confidence 21 21111 11111 1113467899998865421 1234445555554433 446778899
Q ss_pred cCchhHHHHHHHhc
Q 008207 303 TLPSWVKHISTKFL 316 (574)
Q Consensus 303 T~~~~~~~~~~~~~ 316 (574)
|........+..|.
T Consensus 223 ~~gq~a~~~a~~f~ 236 (443)
T 3dm5_A 223 TIGQQAYNQALAFK 236 (443)
T ss_dssp GGGGGHHHHHHHHH
T ss_pred CCchhHHHHHHHHH
Confidence 88766666666554
No 137
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.89 E-value=0.22 Score=47.73 Aligned_cols=53 Identities=13% Similarity=0.118 Sum_probs=30.6
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHH-HHHHHH--HhcCCcEEEEccCCChhHHHh
Q 008207 108 PNAVSRFRISVPLREKLKSKGIESLFPIQ-AMTFDM--VLDGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q-~~~i~~--il~~~dvi~~a~TGsGKTla~ 163 (574)
+..|+++.-.....+.|...-. .+.+ .+.+.. +...+.+++.||+|+|||...
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 4457777666666666654311 0111 111111 234678999999999999753
No 138
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.78 E-value=0.52 Score=46.44 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=15.0
Q ss_pred CcEEEEccCCChhHHHh
Q 008207 147 SDLVGRARTGQGKTLAF 163 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (574)
..+++.||+|+|||...
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999854
No 139
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.78 E-value=1.9 Score=39.30 Aligned_cols=16 Identities=25% Similarity=0.177 Sum_probs=14.0
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
.+++.|++|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999753
No 140
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.37 E-value=0.93 Score=45.12 Aligned_cols=16 Identities=25% Similarity=0.177 Sum_probs=13.9
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
.+++.||+|+|||...
T Consensus 40 ~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4799999999999754
No 141
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.33 E-value=0.23 Score=45.86 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCChhHHHhH
Q 008207 145 DGSDLVGRARTGQGKTLAFV 164 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~ 164 (574)
.|.-+++.|++|+|||....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 46778999999999997543
No 142
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.20 E-value=0.32 Score=47.54 Aligned_cols=16 Identities=38% Similarity=0.341 Sum_probs=14.2
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
++++.||+|+|||...
T Consensus 48 ~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAA 63 (327)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 6999999999999753
No 143
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.97 E-value=0.46 Score=42.75 Aligned_cols=30 Identities=20% Similarity=0.196 Sum_probs=24.1
Q ss_pred CCcEEEEccCCChhHHHhHHHHHHHHhCCC
Q 008207 146 GSDLVGRARTGQGKTLAFVLPILESLTNGP 175 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~lpil~~l~~~~ 175 (574)
...+++...+|.|||.+++--++..+..+.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~ 57 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGK 57 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 457999999999999987777777776553
No 144
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.83 E-value=0.46 Score=46.59 Aligned_cols=51 Identities=20% Similarity=0.174 Sum_probs=30.3
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHH-----hcCCcEEEEccCCChhHHHh
Q 008207 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMV-----LDGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i-----l~~~dvi~~a~TGsGKTla~ 163 (574)
.+..|+++.-.....+.|...-. .|.. .|.+ ...+.+++.||+|+|||...
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~~---~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHH---CGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHHh---CHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34457777766777766654311 1111 0111 12357999999999999854
No 145
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.77 E-value=0.64 Score=46.58 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=14.4
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999854
No 146
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=92.76 E-value=0.18 Score=55.89 Aligned_cols=86 Identities=21% Similarity=0.251 Sum_probs=66.6
Q ss_pred hhhhHHHHhhcCCCeEEEEecChHHHHHHHHhCC--------CCccccccCCHHHHHHHHHHHhCCCccEEEEec-cccc
Q 008207 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN-VAAR 421 (574)
Q Consensus 351 ~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~--------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd-~~~~ 421 (574)
..+..++.....+.+++|.++|+.-+...+..+. .+..+||+++..+|...+..+.+|..+|+|+|. .+..
T Consensus 405 vall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~ 484 (780)
T 1gm5_A 405 VAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE 484 (780)
T ss_dssp HHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH
T ss_pred HHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh
Confidence 3444444444457899999999987776665442 567899999999999999999999999999995 4456
Q ss_pred cCCCCCCcEEEEeCC
Q 008207 422 GLDINDVQLIIQCEP 436 (574)
Q Consensus 422 Gldi~~v~~VI~~d~ 436 (574)
.+++.++.+||.-..
T Consensus 485 ~~~~~~l~lVVIDEa 499 (780)
T 1gm5_A 485 DVHFKNLGLVIIDEQ 499 (780)
T ss_dssp CCCCSCCCEEEEESC
T ss_pred hhhccCCceEEeccc
Confidence 788899999885443
No 147
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.74 E-value=0.26 Score=49.32 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=15.6
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
+..+++.|++|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999854
No 148
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.33 E-value=0.74 Score=45.87 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.5
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
++.+++.||+|+|||...
T Consensus 70 ~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp TCEEEEEESTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 467999999999999853
No 149
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.18 E-value=0.54 Score=46.50 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=14.6
Q ss_pred CcEEEEccCCChhHHHh
Q 008207 147 SDLVGRARTGQGKTLAF 163 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (574)
.++++.||+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46999999999999753
No 150
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.09 E-value=0.34 Score=48.96 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=15.8
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
.+.+++.||+|+|||...
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999754
No 151
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=92.06 E-value=0.87 Score=47.29 Aligned_cols=88 Identities=13% Similarity=0.092 Sum_probs=55.8
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCC
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg 224 (574)
.+....+.+-||||||++..-.+ ... .. .+|||+|+...|.|+++++..|... .| .++..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~-~~~-~~--------------p~lvv~~~~~~A~~l~~~l~~~~~~---~v-~~fp~ 72 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIA-ERH-AG--------------PVVLIAPDMQNALRLHDEISQFTDQ---MV-MNLAD 72 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHH-HHS-SS--------------CEEEEESSHHHHHHHHHHHHHTCSS---CE-EECCC
T ss_pred CCCeEEEeCCCchHHHHHHHHHH-HHh-CC--------------CEEEEeCCHHHHHHHHHHHHhhCCC---cE-EEEeC
Confidence 45678999999999998533222 221 11 1899999999999999999988643 12 22222
Q ss_pred c--------ch----HH-H----HHHhcCCCcEEEEChHHHHHhH
Q 008207 225 A--------PY----HA-Q----EFKLKKGIDVVIGTPGRIKDHI 252 (574)
Q Consensus 225 ~--------~~----~~-~----~~~l~~~~~IlV~Tp~~l~~~l 252 (574)
. .. .. . .........|+|+|...++..+
T Consensus 73 ~e~lpyd~~~p~~~~~~~Rl~~l~~L~~~~~~ivv~sv~al~~~~ 117 (483)
T 3hjh_A 73 WETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRV 117 (483)
T ss_dssp CCSCTTCSSCCCHHHHHHHHHHHHHGGGCCSSEEEEEHHHHHBCC
T ss_pred cccccccccCCChHHHHHHHHHHHHHHhCCCCEEEEEHHHHhhcC
Confidence 1 10 01 1 1122345679999998887543
No 152
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=91.47 E-value=2.2 Score=36.90 Aligned_cols=71 Identities=17% Similarity=0.267 Sum_probs=53.6
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHh----cCCCcEEEEChHHHHHhHhcCCccCCCceE
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~ 264 (574)
++||.++++.-+..+++.+... ++.+..++|+.+.......+ ....+|+|+|. .+.+ .+++.++++
T Consensus 37 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~-Gld~~~~~~ 106 (163)
T 2hjv_A 37 SCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAAR-GIDIENISL 106 (163)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTT-TCCCSCCSE
T ss_pred cEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc-CCchhcCCE
Confidence 4899999999999999988765 57889999998765544332 35689999992 3333 568888998
Q ss_pred EEecC
Q 008207 265 RVLDE 269 (574)
Q Consensus 265 lVlDE 269 (574)
||.-.
T Consensus 107 Vi~~~ 111 (163)
T 2hjv_A 107 VINYD 111 (163)
T ss_dssp EEESS
T ss_pred EEEeC
Confidence 88643
No 153
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=91.27 E-value=0.68 Score=46.15 Aligned_cols=19 Identities=26% Similarity=0.204 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
..+.+++.||+|+|||...
T Consensus 116 ~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCSEEEEESSTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3567999999999999854
No 154
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=91.09 E-value=1.1 Score=40.01 Aligned_cols=70 Identities=16% Similarity=0.301 Sum_probs=53.4
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHh----cCCCcEEEEChHHHHHhHhcCCccCCCceE
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~ 264 (574)
++||.|+++.-+..++..+... ++.+..++|+.+.......+ ....+|+|+|. .+.+ .+++.++++
T Consensus 56 ~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~~-Gldi~~v~~ 125 (191)
T 2p6n_A 56 PVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VASK-GLDFPAIQH 125 (191)
T ss_dssp CEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHHT-TCCCCCCSE
T ss_pred CEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chhc-CCCcccCCE
Confidence 4999999999999999988765 47888999998765544333 35689999992 3333 568888998
Q ss_pred EEec
Q 008207 265 RVLD 268 (574)
Q Consensus 265 lVlD 268 (574)
||.=
T Consensus 126 VI~~ 129 (191)
T 2p6n_A 126 VINY 129 (191)
T ss_dssp EEES
T ss_pred EEEe
Confidence 8763
No 155
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=90.68 E-value=2.4 Score=36.60 Aligned_cols=71 Identities=14% Similarity=0.292 Sum_probs=53.1
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHh----cCCCcEEEEChHHHHHhHhcCCccCCCceE
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~ 264 (574)
++||.++++.-+..++..+... ++.+..++|+.+.......+ .....|+|+|. .+.+ .+++..+++
T Consensus 32 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~-G~d~~~~~~ 101 (165)
T 1fuk_A 32 QAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLAR-GIDVQQVSL 101 (165)
T ss_dssp CEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGTT-TCCCCSCSE
T ss_pred CEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhhc-CCCcccCCE
Confidence 4999999999999999888764 57889999998865544332 35689999993 3333 467888888
Q ss_pred EEecC
Q 008207 265 RVLDE 269 (574)
Q Consensus 265 lVlDE 269 (574)
||.-.
T Consensus 102 Vi~~~ 106 (165)
T 1fuk_A 102 VINYD 106 (165)
T ss_dssp EEESS
T ss_pred EEEeC
Confidence 87643
No 156
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=90.49 E-value=1.8 Score=37.96 Aligned_cols=69 Identities=19% Similarity=0.155 Sum_probs=52.8
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHh----cCCCcEEEEChHHHHHhHhcCCccCCCceE
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~ 264 (574)
++||.|+++..+..++..+... ++.+..++|+.+.......+ ....+|+|+|. .+. ..+++..+++
T Consensus 36 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~-~Gid~~~~~~ 105 (175)
T 2rb4_A 36 QAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VCA-RGIDVKQVTI 105 (175)
T ss_dssp EEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SCC-TTTCCTTEEE
T ss_pred CEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----chh-cCCCcccCCE
Confidence 6999999999999998888653 57889999998876554332 35689999993 233 3568889999
Q ss_pred EEe
Q 008207 265 RVL 267 (574)
Q Consensus 265 lVl 267 (574)
||.
T Consensus 106 Vi~ 108 (175)
T 2rb4_A 106 VVN 108 (175)
T ss_dssp EEE
T ss_pred EEE
Confidence 884
No 157
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.29 E-value=0.46 Score=50.05 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=25.0
Q ss_pred CCceEEEecCchhhhcC--CcHHHHHHHHHhccCccCceEEEEeccC
Q 008207 260 SSLKFRVLDEADEMLRM--GFVEDVELILGKVEDANKVQTLLFSATL 304 (574)
Q Consensus 260 ~~~~~lVlDEah~~l~~--~~~~~~~~il~~l~~~~~~q~ll~SAT~ 304 (574)
....+|||||+|.|... +....+..++... ...+++.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~----~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT----STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC----SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc----CCCEEEEEcCC
Confidence 34679999999998642 2334444444432 34567766664
No 158
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=90.19 E-value=1 Score=43.62 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=27.1
Q ss_pred CCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHh
Q 008207 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~ 163 (574)
..|..|+++--.+...+.|...= .. -....+++.||+|+|||...
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l-~~------------~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 11 YRPRTLDEVVGQDEVIQRLKGYV-ER------------KNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TSCSSGGGSCSCHHHHHHHHTTT-TT------------TCCCCEEEESSSSSSHHHHH
T ss_pred cCCCCHHHHhCCHHHHHHHHHHH-hC------------CCCCeEEEECcCCcCHHHHH
Confidence 34555666655556555554431 00 01225999999999999753
No 159
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=90.11 E-value=0.33 Score=50.11 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=14.7
Q ss_pred CcEEEEccCCChhHHHh
Q 008207 147 SDLVGRARTGQGKTLAF 163 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (574)
..+++.||+|+|||...
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 46999999999999854
No 160
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.94 E-value=1 Score=44.40 Aligned_cols=16 Identities=38% Similarity=0.424 Sum_probs=13.9
Q ss_pred EEEEccCCChhHHHhH
Q 008207 149 LVGRARTGQGKTLAFV 164 (574)
Q Consensus 149 vi~~a~TGsGKTla~~ 164 (574)
+++.||+|+|||....
T Consensus 49 ~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIV 64 (340)
T ss_dssp EEEECSSSSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8999999999997543
No 161
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=89.88 E-value=2.8 Score=38.11 Aligned_cols=69 Identities=17% Similarity=0.264 Sum_probs=53.4
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHh----cCCCcEEEEChHHHHHhHhcCCccCCCceE
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~ 264 (574)
++||.|+++.-+..+++.+... ++.+..++|+.+...+...+ ....+|+|+| +.+. .++++.++++
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~-~Gidi~~v~~ 102 (212)
T 3eaq_A 33 RAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVAA-RGLDIPQVDL 102 (212)
T ss_dssp CEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTTT-CSSSCCCBSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Chhh-cCCCCccCcE
Confidence 4999999999999999988765 57889999998876654433 3568899999 3333 3568888998
Q ss_pred EEe
Q 008207 265 RVL 267 (574)
Q Consensus 265 lVl 267 (574)
||.
T Consensus 103 Vi~ 105 (212)
T 3eaq_A 103 VVH 105 (212)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 162
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=89.81 E-value=0.6 Score=41.23 Aligned_cols=119 Identities=11% Similarity=0.115 Sum_probs=72.8
Q ss_pred cHHHHHHHHHHhcC--CcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHh
Q 008207 133 FPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (574)
Q Consensus 133 ~~~Q~~~i~~il~~--~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (574)
.+-|..++..++.. +-.++.+.-|++||...+.-++...... +-++.+|+|+..-+....+..
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~------------Gr~V~vLAp~~~s~~~l~~~~--- 100 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQ------------GREVQIIAADRRSQMNMKQDE--- 100 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHT------------TCCEEEECSTTHHHHHHSCTT---
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhc------------CeEEEEEcCchHHHHHHHhhc---
Confidence 45688888888743 4577889999999998655555444332 335999999977665443322
Q ss_pred hCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEEecCchhhhcCCcHHHHHHHHHhcc
Q 008207 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290 (574)
Q Consensus 211 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~ 290 (574)
++.-. ++ |- ..+..+...|..=+++|||||-.|. ..++..++....
T Consensus 101 ----~l~~~--------------------t~--t~----~~ll~~~~~~tp~s~lIVD~AekLS----~kE~~~Lld~A~ 146 (189)
T 2l8b_A 101 ----RLSGE--------------------LI--TG----RRQLLEGMAFTPGSTVIVDQGEKLS----LKETLTLLDGAA 146 (189)
T ss_dssp ----TCSSC--------------------SS--ST----TTTTTTSCCCCCCCEEEEEESSSHH----HHHHHHHHHHHH
T ss_pred ----CcCcc--------------------ee--eh----hhhhcCCCCCCCCCEEEEechhhcC----HHHHHHHHHHHH
Confidence 11100 00 10 1222333334555689999999886 566666666554
Q ss_pred CccCceEEEEe
Q 008207 291 DANKVQTLLFS 301 (574)
Q Consensus 291 ~~~~~q~ll~S 301 (574)
.. +.|+|++-
T Consensus 147 ~~-naqvvll~ 156 (189)
T 2l8b_A 147 RH-NVQVLITD 156 (189)
T ss_dssp HT-TCCEEEEE
T ss_pred hc-CCEEEEeC
Confidence 43 46777663
No 163
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=89.74 E-value=0.84 Score=45.44 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.4
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
.+.+++.||+|+|||+..
T Consensus 84 ~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCEEEECSTTSCHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 457999999999999854
No 164
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.69 E-value=0.48 Score=44.22 Aligned_cols=43 Identities=12% Similarity=0.004 Sum_probs=27.5
Q ss_pred CCceEEEecCchhhhc-----CCcHHHHHHHHHhccCccCceEEEEeccC
Q 008207 260 SSLKFRVLDEADEMLR-----MGFVEDVELILGKVEDANKVQTLLFSATL 304 (574)
Q Consensus 260 ~~~~~lVlDEah~~l~-----~~~~~~~~~il~~l~~~~~~q~ll~SAT~ 304 (574)
.+.++||+||.-.+++ ......+..++..+... . .+++++.-.
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~-g-~tii~vtH~ 181 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEM-G-VTTILTTEA 181 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHH-C-CEEEEEECC
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHC-C-CeEEEEECC
Confidence 4578999999998876 44455566777666432 2 345555443
No 165
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.68 E-value=0.37 Score=46.58 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=18.4
Q ss_pred hcCCcEEEEccCCChhHHHhHHHH
Q 008207 144 LDGSDLVGRARTGQGKTLAFVLPI 167 (574)
Q Consensus 144 l~~~dvi~~a~TGsGKTla~~lpi 167 (574)
..|.-+++.|++|+|||.....-+
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia 56 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQA 56 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHH
Confidence 357789999999999997544333
No 166
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.45 E-value=1.4 Score=45.43 Aligned_cols=27 Identities=19% Similarity=0.048 Sum_probs=19.4
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHH
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESL 171 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l 171 (574)
.|.-+++.|++|+|||...+..+.+..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 566789999999999975444444433
No 167
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=89.32 E-value=1.5 Score=44.26 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=14.5
Q ss_pred CCcEEE--EccCCChhHHHh
Q 008207 146 GSDLVG--RARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~--~a~TGsGKTla~ 163 (574)
+..+++ .|++|+|||...
T Consensus 50 ~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHH
Confidence 345888 899999999853
No 168
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.77 E-value=1.1 Score=43.42 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=14.0
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
++++.||+|+|||...
T Consensus 44 ~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSV 59 (323)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 4999999999999753
No 169
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=88.62 E-value=4.8 Score=40.55 Aligned_cols=19 Identities=21% Similarity=-0.039 Sum_probs=15.6
Q ss_pred CCcEEEEccCCChhHHHhH
Q 008207 146 GSDLVGRARTGQGKTLAFV 164 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~ 164 (574)
|.-+.+.|++|+|||....
T Consensus 178 Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp TSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHH
Confidence 4568899999999997544
No 170
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=88.50 E-value=0.78 Score=47.84 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
..+.+++.||+|+|||+..
T Consensus 237 ~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCEEEEECSTTSSHHHHH
T ss_pred CCCcEEEECcCCCCHHHHH
Confidence 3467999999999999854
No 171
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=88.21 E-value=2.1 Score=43.95 Aligned_cols=27 Identities=26% Similarity=0.108 Sum_probs=19.1
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHH
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESL 171 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l 171 (574)
.|.-+++.|++|+|||...+-.+.+..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 456689999999999975444444444
No 172
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=87.87 E-value=3 Score=36.43 Aligned_cols=71 Identities=7% Similarity=0.133 Sum_probs=53.2
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHh----cCCCcEEEEChHHHHHhHhcCCccCCCceE
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~ 264 (574)
++||.|+++.-+..+++.+... ++.+..++|+.+.......+ .....|+|+|. .+. ..+++..+++
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gldi~~~~~ 102 (172)
T 1t5i_A 33 QVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFG-RGMDIERVNI 102 (172)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CCS-TTCCGGGCSE
T ss_pred cEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----chh-cCcchhhCCE
Confidence 4999999999999999988765 57888999998766544332 35689999993 222 3567888888
Q ss_pred EEecC
Q 008207 265 RVLDE 269 (574)
Q Consensus 265 lVlDE 269 (574)
||.-.
T Consensus 103 Vi~~d 107 (172)
T 1t5i_A 103 AFNYD 107 (172)
T ss_dssp EEESS
T ss_pred EEEEC
Confidence 87643
No 173
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.64 E-value=2 Score=40.93 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=19.6
Q ss_pred HhcCCcEEEEccCCChhHHHhHHHH
Q 008207 143 VLDGSDLVGRARTGQGKTLAFVLPI 167 (574)
Q Consensus 143 il~~~dvi~~a~TGsGKTla~~lpi 167 (574)
+..|.-+++.|++|+|||......+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4578889999999999998644433
No 174
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=87.40 E-value=1.9 Score=38.23 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=43.6
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHH----hcCCCcEEEEChHHHHHhHhcCCccCCCceE
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK----LKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~----l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~ 264 (574)
++||.++++.-+..++..+... ++.+..++|+.+....... ......|+|+|. .+.+ ++++.++.+
T Consensus 48 k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~-Gldi~~~~~ 117 (185)
T 2jgn_A 48 LTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAAR-GLDISNVKH 117 (185)
T ss_dssp CEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCSBSE
T ss_pred eEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhhc-CCCcccCCE
Confidence 4999999999999999888764 5788899998765433222 235688999993 2222 457888888
Q ss_pred EEe
Q 008207 265 RVL 267 (574)
Q Consensus 265 lVl 267 (574)
||.
T Consensus 118 VI~ 120 (185)
T 2jgn_A 118 VIN 120 (185)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 175
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=87.37 E-value=0.44 Score=40.46 Aligned_cols=20 Identities=10% Similarity=-0.039 Sum_probs=17.1
Q ss_pred HhcCCcEEEEccCCChhHHH
Q 008207 143 VLDGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 143 il~~~dvi~~a~TGsGKTla 162 (574)
...+.++++.|++|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 45678899999999999974
No 176
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=87.06 E-value=0.47 Score=40.32 Aligned_cols=21 Identities=10% Similarity=-0.007 Sum_probs=17.6
Q ss_pred HhcCCcEEEEccCCChhHHHh
Q 008207 143 VLDGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 143 il~~~dvi~~a~TGsGKTla~ 163 (574)
...+.++++.|++|+|||..+
T Consensus 21 a~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHH
Confidence 346788999999999999854
No 177
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=86.85 E-value=0.54 Score=46.39 Aligned_cols=50 Identities=26% Similarity=0.207 Sum_probs=29.9
Q ss_pred hcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHH
Q 008207 144 LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (574)
Q Consensus 144 l~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~ 207 (574)
..|.=+++.|++|+|||...+-.+.+....+ ..++|++.- .-..|+...+
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g-------------~~Vl~fSlE-ms~~ql~~Rl 93 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDD-------------RGVAVFSLE-MSAEQLALRA 93 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTT-------------CEEEEEESS-SCHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-------------CeEEEEeCC-CCHHHHHHHH
Confidence 3456689999999999975444444433322 137777643 3344444444
No 178
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=86.66 E-value=3.5 Score=37.92 Aligned_cols=24 Identities=21% Similarity=-0.035 Sum_probs=18.5
Q ss_pred cCCcEEEEccCCChhHHHhHHHHH
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPIL 168 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil 168 (574)
.|.-+++.|++|+|||......+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 567799999999999986544443
No 179
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=86.28 E-value=1.4 Score=51.03 Aligned_cols=78 Identities=17% Similarity=0.171 Sum_probs=62.0
Q ss_pred HHHhhcCCCeEEEEecChHHHHHHHHhCC--------CCccccccCCHHHHHHHHHHHhCCCccEEEEe-ccccccCCCC
Q 008207 356 IIRCYSSGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVAT-NVAARGLDIN 426 (574)
Q Consensus 356 ll~~~~~~~~~lVF~~t~~~~~~l~~~l~--------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT-d~~~~Gldi~ 426 (574)
++.....+.+++|.++|..-+...+..+. .+..++|..+..++...+..+..|..+|+|+| ..+...+.+.
T Consensus 645 a~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~ 724 (1151)
T 2eyq_A 645 AFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFK 724 (1151)
T ss_dssp HHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCS
T ss_pred HHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCcccc
Confidence 33344467899999999987766655443 45678999999999999999999999999999 5556678888
Q ss_pred CCcEEEE
Q 008207 427 DVQLIIQ 433 (574)
Q Consensus 427 ~v~~VI~ 433 (574)
++.+||.
T Consensus 725 ~l~lvIi 731 (1151)
T 2eyq_A 725 DLGLLIV 731 (1151)
T ss_dssp SEEEEEE
T ss_pred ccceEEE
Confidence 8988884
No 180
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=86.14 E-value=1.6 Score=42.66 Aligned_cols=25 Identities=16% Similarity=-0.063 Sum_probs=18.4
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHH
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILE 169 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~ 169 (574)
.|.-+++.|++|+|||...+..+.+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHH
Confidence 3567999999999999754444433
No 181
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=85.97 E-value=11 Score=40.67 Aligned_cols=76 Identities=17% Similarity=0.247 Sum_probs=58.2
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHh----cCCCcEEEEChHHHHHhHhcCCccCCCce
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~ 263 (574)
.++||.|+|+.-+..+++.+... ++.+..++|+.+.......+ ....+|+|||. .+ ..++++.+++
T Consensus 446 ~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l-~~GlDip~v~ 515 (661)
T 2d7d_A 446 ERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LL-REGLDIPEVS 515 (661)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CC-STTCCCTTEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hh-hCCcccCCCC
Confidence 36999999999999999888765 47788888887765444332 35689999994 33 3467899999
Q ss_pred EEEecCchhh
Q 008207 264 FRVLDEADEM 273 (574)
Q Consensus 264 ~lVlDEah~~ 273 (574)
+||+-+++..
T Consensus 516 lVi~~d~d~~ 525 (661)
T 2d7d_A 516 LVAILDADKE 525 (661)
T ss_dssp EEEETTTTCC
T ss_pred EEEEeCcccc
Confidence 9999998854
No 182
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=84.44 E-value=27 Score=33.73 Aligned_cols=42 Identities=17% Similarity=0.308 Sum_probs=25.3
Q ss_pred hHHHHHhHhcCCccCCCceEEEecCchhhhc---CCcHHHHHHHHHhc
Q 008207 245 PGRIKDHIERGNIDLSSLKFRVLDEADEMLR---MGFVEDVELILGKV 289 (574)
Q Consensus 245 p~~l~~~l~~~~~~l~~~~~lVlDEah~~l~---~~~~~~~~~il~~l 289 (574)
...+++.+....- .--+|||||+|.+.. ..+...+..++...
T Consensus 124 ~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~ 168 (357)
T 2fna_A 124 FANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNL 168 (357)
T ss_dssp HHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcC
Confidence 3455555543211 234899999999864 35666666666543
No 183
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=84.36 E-value=10 Score=39.92 Aligned_cols=75 Identities=11% Similarity=0.046 Sum_probs=56.9
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHh----cCCCcEEEEChHHHHHhHhcCCccCCCce
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~ 263 (574)
.++||.|+|+.-+..++..+..... .++.+..++|+.+.......+ ....+|+|||. .+.+ .+++.+++
T Consensus 340 ~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~-GiDip~v~ 412 (563)
T 3i5x_A 340 YKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGAR-GMDFPNVH 412 (563)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTS-SCCCTTCC
T ss_pred CcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhhc-CCCcccCC
Confidence 3699999999999999999986542 367889999998876544333 35789999994 3333 56899999
Q ss_pred EEEecC
Q 008207 264 FRVLDE 269 (574)
Q Consensus 264 ~lVlDE 269 (574)
+||.-.
T Consensus 413 ~VI~~~ 418 (563)
T 3i5x_A 413 EVLQIG 418 (563)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 988554
No 184
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=84.20 E-value=5.5 Score=38.40 Aligned_cols=69 Identities=17% Similarity=0.297 Sum_probs=53.0
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHh----cCCCcEEEEChHHHHHhHhcCCccCCCceE
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~ 264 (574)
++||.|+|+.-+..+++.+.. .++.+..++|+.+...+...+ ....+|+|+| +.+.+ .+++.++++
T Consensus 30 ~~LVF~~t~~~~~~l~~~L~~----~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va~~-Gidi~~v~~ 99 (300)
T 3i32_A 30 RAMVFTRTKAETEEIAQGLLR----LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVAAR-GLDIPQVDL 99 (300)
T ss_dssp SEEEECSSHHHHHHHHHHHHT----TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STTTC-STTCCCCSE
T ss_pred CEEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chhhc-CccccceeE
Confidence 499999999999988888764 368899999998876655433 3568999999 33333 568889998
Q ss_pred EEe
Q 008207 265 RVL 267 (574)
Q Consensus 265 lVl 267 (574)
||.
T Consensus 100 VI~ 102 (300)
T 3i32_A 100 VVH 102 (300)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 185
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=83.74 E-value=1.2 Score=41.25 Aligned_cols=51 Identities=18% Similarity=0.179 Sum_probs=31.4
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHH
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (574)
.|.-+++.|++|+|||......+...+..+. .++++.-. +...++.+.+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~-------------~v~~~~~e-~~~~~~~~~~~~ 72 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGE-------------PGIYVALE-EHPVQVRQNMAQ 72 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTC-------------CEEEEESS-SCHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCC-------------eEEEEEcc-CCHHHHHHHHHH
Confidence 5678999999999999864444444443321 26777643 334555555543
No 186
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=83.59 E-value=4.6 Score=40.55 Aligned_cols=71 Identities=18% Similarity=0.243 Sum_probs=54.4
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHh----cCCCcEEEEChHHHHHhHhcCCccCCCc
Q 008207 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSL 262 (574)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~~l~~~l~~~~~~l~~~ 262 (574)
+.++||.++++.-+..+++.+... ++.+..++|+.+.......+ ....+|+|+|. .+.+ .+++.++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~-Gidip~v 345 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAAR-GLDISNV 345 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHT-TSCCCCE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhc-CCCcccC
Confidence 346999999999999999988764 57889999998865544332 35689999994 3333 5689999
Q ss_pred eEEEe
Q 008207 263 KFRVL 267 (574)
Q Consensus 263 ~~lVl 267 (574)
++||.
T Consensus 346 ~~Vi~ 350 (417)
T 2i4i_A 346 KHVIN 350 (417)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 98875
No 187
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=83.56 E-value=1.9 Score=43.60 Aligned_cols=83 Identities=11% Similarity=0.141 Sum_probs=62.0
Q ss_pred hhHHHHhhcCCCeEEEEecChHHHHHHHHhCC-------CCccccccCCHHHHHHHHHHHhCCCccEEEEecccc----c
Q 008207 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA----R 421 (574)
Q Consensus 353 l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~-------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~----~ 421 (574)
+..++.....+.++||.++++.-+..++..+. .+..+||+.+..++...++.+..|..+|+|+|.-.- .
T Consensus 54 l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~ 133 (414)
T 3oiy_A 54 MMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNRE 133 (414)
T ss_dssp HHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHH
T ss_pred HHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHH
Confidence 33334444577899999999988777665543 567899999999998999999999999999996422 1
Q ss_pred cCCCCCCcEEEEeC
Q 008207 422 GLDINDVQLIIQCE 435 (574)
Q Consensus 422 Gldi~~v~~VI~~d 435 (574)
-++...+++||.=.
T Consensus 134 ~~~~~~~~~iViDE 147 (414)
T 3oiy_A 134 KLSQKRFDFVFVDD 147 (414)
T ss_dssp HHTTCCCSEEEESC
T ss_pred HhccccccEEEEeC
Confidence 25667888888533
No 188
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=83.53 E-value=1.3 Score=53.68 Aligned_cols=59 Identities=12% Similarity=0.176 Sum_probs=35.1
Q ss_pred CCCCcEEEEeCCCCCHh--HHHHHhcccccCCCcceEEEEECCCchHHHHHHHHhCCcceecCC
Q 008207 425 INDVQLIIQCEPPRDVE--AYIHRSGRTGRAGNTGVAVMLYDPRKSSVSKIERESGVKFEHISA 486 (574)
Q Consensus 425 i~~v~~VI~~d~p~s~~--~yiqr~GR~gR~g~~G~~i~l~~~~~~~~~~i~~~~~~~~~~~~~ 486 (574)
+|.=+.|=.|++..|-. --+|.+--+-+.| |.|.+ ++.....-..+.+.+|+.++.+-.
T Consensus 1772 ~p~g~~~e~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~-~d~~~~~~~~~~~~~g~~~~~~~~ 1832 (2050)
T 3cmu_A 1772 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAF-IDAEHALDPIYARKLGVDIDNLLC 1832 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEE-ECTTSCCCHHHHHHTTCCTTTCEE
T ss_pred CcCCcEEEEECCCCcCHHHHHHHHHHHHhhcC--CEEEE-EcCccccCHHHHHHcCCCHHHeEE
Confidence 45566777888877643 3457665554443 55544 444422223556788999887544
No 189
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=83.37 E-value=1.5 Score=45.14 Aligned_cols=29 Identities=21% Similarity=0.054 Sum_probs=20.8
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhC
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTN 173 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~ 173 (574)
.|.-+++.|++|+|||...+-.+.+....
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~ 224 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN 224 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc
Confidence 45669999999999997655555554443
No 190
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=83.04 E-value=3.3 Score=40.51 Aligned_cols=53 Identities=9% Similarity=0.129 Sum_probs=34.2
Q ss_pred ceEEEecCchhhh-cCCcHHHHHHHHHhccCccCceEEEEeccCchhHHHHHHHhc
Q 008207 262 LKFRVLDEADEML-RMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (574)
Q Consensus 262 ~~~lVlDEah~~l-~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~~~~~~~~~~~~ 316 (574)
.+++++|.+.++- +......+..+...+.. ...++++.++....+...++.+.
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~--de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKP--NLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCC--SEEEEEEEGGGTTHHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcC--CCCEEEEecHHHHHHHHHHHHHH
Confidence 4567788776542 23355666666555543 45778889988877767666654
No 191
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=82.89 E-value=0.72 Score=47.34 Aligned_cols=44 Identities=14% Similarity=0.232 Sum_probs=31.0
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHH
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~ 201 (574)
...++++.|+||||||... .+++..+... +..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~~------------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLLR------------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHT------------TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHHC------------CCcEEEEeCCCchhH
Confidence 4679999999999999974 3333333321 124889999988864
No 192
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=82.88 E-value=2.7 Score=40.82 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=16.4
Q ss_pred CCcEEEEccCCChhHHHhH
Q 008207 146 GSDLVGRARTGQGKTLAFV 164 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~ 164 (574)
++.+++.||+|+|||....
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 6789999999999998543
No 193
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=82.53 E-value=1.5 Score=48.55 Aligned_cols=16 Identities=31% Similarity=0.239 Sum_probs=14.2
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
.+++.||||+|||..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5999999999999854
No 194
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=82.11 E-value=14 Score=39.05 Aligned_cols=76 Identities=11% Similarity=0.046 Sum_probs=57.4
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHh----cCCCcEEEEChHHHHHhHhcCCccCCCce
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~ 263 (574)
.++||.|+|+.-+..+++.+..... .++.+..++|+.+.......+ ....+|+|||. .+.+ .+++.+++
T Consensus 289 ~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~~-GiDip~v~ 361 (579)
T 3sqw_A 289 YKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGAR-GMDFPNVH 361 (579)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTS-SCCCTTCC
T ss_pred CcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhhc-CCCcccCC
Confidence 3699999999999999999986542 367889999998876544332 35789999994 3333 57899999
Q ss_pred EEEecCc
Q 008207 264 FRVLDEA 270 (574)
Q Consensus 264 ~lVlDEa 270 (574)
+||.-..
T Consensus 362 ~VI~~~~ 368 (579)
T 3sqw_A 362 EVLQIGV 368 (579)
T ss_dssp EEEEESC
T ss_pred EEEEcCC
Confidence 9886543
No 195
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=81.76 E-value=1.9 Score=49.77 Aligned_cols=82 Identities=11% Similarity=0.132 Sum_probs=63.0
Q ss_pred hHHHHhhcCCCeEEEEecChHHHHHHHHhCC-------CCccccccCCHHHHHHHHHHHhCCCccEEEEecccc----cc
Q 008207 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA----RG 422 (574)
Q Consensus 354 ~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~-------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~~----~G 422 (574)
..++.....+.++||.++++.-+..++..+. .+..+||+++..+|...++.+..|..+|+|+|.-.- .-
T Consensus 112 ~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~ 191 (1104)
T 4ddu_A 112 MTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK 191 (1104)
T ss_dssp HHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH
T ss_pred HHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh
Confidence 3334444577899999999999888877665 456789999998999999999999999999995321 12
Q ss_pred CCCCCCcEEEEeC
Q 008207 423 LDINDVQLIIQCE 435 (574)
Q Consensus 423 ldi~~v~~VI~~d 435 (574)
++..++++||.-.
T Consensus 192 l~~~~l~~lViDE 204 (1104)
T 4ddu_A 192 LSQKRFDFVFVDD 204 (1104)
T ss_dssp HHTSCCSEEEESC
T ss_pred hcccCcCEEEEeC
Confidence 5567889888533
No 196
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=80.92 E-value=13 Score=35.54 Aligned_cols=19 Identities=26% Similarity=0.142 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
.++-+.+.+++|+|||...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~ 115 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTA 115 (295)
T ss_dssp SSEEEEEECCTTTTHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4566778899999999753
No 197
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=80.89 E-value=5.7 Score=39.70 Aligned_cols=70 Identities=14% Similarity=0.166 Sum_probs=54.1
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHh----cCCCcEEEEChHHHHHhHhcCCccCCCce
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~ 263 (574)
.++||.|+++.-+..+++.+... ++.+..++|+.+.......+ ....+|+|+|. .+. .++++.+++
T Consensus 267 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~-~Gidip~~~ 336 (412)
T 3fht_A 267 AQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA-RGIDVEQVS 336 (412)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT-SSCCCTTEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccc-cCCCccCCC
Confidence 46999999999999999998765 47788899998766554333 35689999994 333 357899999
Q ss_pred EEEe
Q 008207 264 FRVL 267 (574)
Q Consensus 264 ~lVl 267 (574)
+||.
T Consensus 337 ~Vi~ 340 (412)
T 3fht_A 337 VVIN 340 (412)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9884
No 198
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=80.37 E-value=42 Score=36.16 Aligned_cols=75 Identities=16% Similarity=0.193 Sum_probs=56.8
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHH---h-cCCCcEEEEChHHHHHhHhcCCccCCCceE
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK---L-KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l-~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~ 264 (574)
++||.|+|+..+..+++.+... ++.+..++|+.+....... + ....+|+|||. .+. .++++..+++
T Consensus 441 ~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l~-~GlDip~v~l 510 (664)
T 1c4o_A 441 RTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LLR-EGLDIPEVSL 510 (664)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CCC-TTCCCTTEEE
T ss_pred EEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hhh-cCccCCCCCE
Confidence 6999999999999999888765 4778888888775544433 2 34689999993 233 4578999999
Q ss_pred EEecCchhh
Q 008207 265 RVLDEADEM 273 (574)
Q Consensus 265 lVlDEah~~ 273 (574)
||+=+++..
T Consensus 511 VI~~d~d~~ 519 (664)
T 1c4o_A 511 VAILDADKE 519 (664)
T ss_dssp EEETTTTSC
T ss_pred EEEeCCccc
Confidence 998888743
No 199
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=80.04 E-value=2.9 Score=42.79 Aligned_cols=68 Identities=15% Similarity=0.092 Sum_probs=47.2
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEE
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lV 266 (574)
.++||.||+++-+..+++.+... ++.+..++|...............+|+|||. .+.. .+++. +++||
T Consensus 178 ~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~-----v~e~-GiDip-v~~VI 245 (440)
T 1yks_A 178 RPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD-----IAEM-GANLC-VERVL 245 (440)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS-----STTC-CTTCC-CSEEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECC-----hhhe-eeccC-ceEEE
Confidence 46999999999999999998765 5788888885443333333345689999994 3443 45788 88877
No 200
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=79.73 E-value=6.3 Score=38.54 Aligned_cols=72 Identities=21% Similarity=0.248 Sum_probs=53.5
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHh----cCCCcEEEEChHHHHHhHhcCCccCCCce
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~ 263 (574)
.++||.++++.-+..+++.+... ++.+..++|+.+.......+ ....+|+|+|. .+.. .+++.+++
T Consensus 239 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~-Gid~~~~~ 308 (367)
T 1hv8_A 239 FYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSR-GIDVNDLN 308 (367)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHH-HCCCSCCS
T ss_pred CcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc-CCCcccCC
Confidence 35899999999999999988765 57788999998765544322 35689999994 2222 46788888
Q ss_pred EEEecC
Q 008207 264 FRVLDE 269 (574)
Q Consensus 264 ~lVlDE 269 (574)
+||.-.
T Consensus 309 ~Vi~~~ 314 (367)
T 1hv8_A 309 CVINYH 314 (367)
T ss_dssp EEEESS
T ss_pred EEEEec
Confidence 888643
No 201
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=78.95 E-value=7.5 Score=38.45 Aligned_cols=74 Identities=16% Similarity=0.210 Sum_probs=56.3
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHh----cCCCcEEEEChHHHHHhHhcCCccCCCce
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~ 263 (574)
.++||.++++.-+..+++.+... ++.+..++|+.+.......+ ....+|+|+|. .+. .++++.+++
T Consensus 244 ~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~-~Gidip~~~ 313 (395)
T 3pey_A 244 GSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLA-RGIDIPTVS 313 (395)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGS-SSCCCTTEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh-cCCCcccCC
Confidence 47999999999999999988765 46788899998765544332 35688999994 333 457899999
Q ss_pred EEEecCch
Q 008207 264 FRVLDEAD 271 (574)
Q Consensus 264 ~lVlDEah 271 (574)
+||.-...
T Consensus 314 ~Vi~~~~p 321 (395)
T 3pey_A 314 MVVNYDLP 321 (395)
T ss_dssp EEEESSCC
T ss_pred EEEEcCCC
Confidence 99875554
No 202
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=78.81 E-value=6.7 Score=41.84 Aligned_cols=70 Identities=16% Similarity=0.169 Sum_probs=54.1
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHH----hcCCCcEEEEChHHHHHhHhcCCccCCCce
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK----LKKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~----l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~ 263 (574)
.++||.|+|+.-+.++++.+... ++.+..++|+.+....... .....+|+|+|. .+. ..+++.+++
T Consensus 268 ~~~IVf~~sr~~~e~la~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~-----a~~-~GID~p~V~ 337 (591)
T 2v1x_A 268 QSGIIYCFSQKDSEQVTVSLQNL----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV-----AFG-MGIDKPDVR 337 (591)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT-----TSC-TTCCCSCEE
T ss_pred CCeEEEeCcHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hhh-cCCCccccc
Confidence 46999999999999999998764 5788999999876554332 346789999993 222 356889999
Q ss_pred EEEe
Q 008207 264 FRVL 267 (574)
Q Consensus 264 ~lVl 267 (574)
+||.
T Consensus 338 ~VI~ 341 (591)
T 2v1x_A 338 FVIH 341 (591)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9884
No 203
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=78.64 E-value=1.7 Score=43.08 Aligned_cols=21 Identities=19% Similarity=0.072 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCChhHHHhHH
Q 008207 145 DGSDLVGRARTGQGKTLAFVL 165 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~l 165 (574)
.|.-+++.||+|+|||...+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~ 80 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALH 80 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 356789999999999975433
No 204
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=78.54 E-value=4.1 Score=49.51 Aligned_cols=48 Identities=13% Similarity=0.052 Sum_probs=34.7
Q ss_pred HhcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHH
Q 008207 143 VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (574)
Q Consensus 143 il~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (574)
+..|..+++.+++|+|||......+.+.+..+. +++++. ..++..++.
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge-------------~~~Fit-~ee~~~~L~ 1125 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK-------------TCAFID-AEHALDPIY 1125 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTC-------------CEEEEC-TTSCCCHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCC-------------eEEEEE-ccccHHHHH
Confidence 336789999999999999977777777665543 377775 446555555
No 205
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=78.45 E-value=1.8 Score=45.38 Aligned_cols=40 Identities=18% Similarity=0.052 Sum_probs=26.7
Q ss_pred HHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEccCCChhHHH
Q 008207 121 REKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 121 ~~~l~~~g~~~~~~~Q~~~i~~-il~~~dvi~~a~TGsGKTla 162 (574)
...|.+.|. +++.+...+.. +..|..+++.||||||||..
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 344555553 34444444544 45788899999999999974
No 206
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=78.29 E-value=7.8 Score=39.42 Aligned_cols=68 Identities=16% Similarity=0.221 Sum_probs=53.2
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHh----cCCCcEEEEChHHHHHhHhcCCccCCCceEE
Q 008207 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (574)
Q Consensus 190 ~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~l 265 (574)
+||.|+++.-|..+++.+... ++.+..++|+.+.......+ ....+|+|||. .+. ..+++.++++|
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~-rGlDi~~v~~V 372 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VAS-RGLDIKNIKHV 372 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGT-SSCCCTTCCEE
T ss_pred EEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhh-CCCCcccCCEE
Confidence 899999999999999888764 57889999998876554333 35689999995 333 35789999998
Q ss_pred Ee
Q 008207 266 VL 267 (574)
Q Consensus 266 Vl 267 (574)
|.
T Consensus 373 I~ 374 (434)
T 2db3_A 373 IN 374 (434)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 207
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=78.23 E-value=8.3 Score=38.18 Aligned_cols=73 Identities=7% Similarity=0.122 Sum_probs=54.8
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHh----cCCCcEEEEChHHHHHhHhcCCccCCCce
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~ 263 (574)
.++||.++++.-+..+++.+... ++.+..++|+.+.......+ .....|+|+|. .+. .++++..++
T Consensus 251 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gidi~~~~ 320 (391)
T 1xti_A 251 NQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFG-RGMDIERVN 320 (391)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----CCS-SCBCCTTEE
T ss_pred CcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----hhh-cCCCcccCC
Confidence 36999999999999999988764 57788899998765443322 34689999993 233 356889999
Q ss_pred EEEecCc
Q 008207 264 FRVLDEA 270 (574)
Q Consensus 264 ~lVlDEa 270 (574)
+||.-..
T Consensus 321 ~Vi~~~~ 327 (391)
T 1xti_A 321 IAFNYDM 327 (391)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 9987543
No 208
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=77.98 E-value=1.9 Score=39.86 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=30.8
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHH
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (574)
.|.-+++.|++|+|||...+-.+.+.+..... .+++++-. +-..++...+..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~------------~v~~~s~E-~~~~~~~~~~~~ 80 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGE------------PGVFVTLE-ERARDLRREMAS 80 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCC------------CEEEEESS-SCHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCC------------Cceeeccc-CCHHHHHHHHHH
Confidence 35679999999999997544444444333211 26776643 334555555543
No 209
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=77.90 E-value=7.4 Score=40.78 Aligned_cols=69 Identities=13% Similarity=0.224 Sum_probs=53.0
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHH----HhcCCCcEEEEChHHHHHhHhcCCccCCCceE
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF----KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~----~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~ 264 (574)
++||.|+|+.-+..+++.+... ++.+..++|+.+...... ......+|+|||. .+. -.+++.++++
T Consensus 238 ~~IVf~~sr~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~-----a~~-~GiD~p~v~~ 307 (523)
T 1oyw_A 238 SGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV-----AFG-MGINKPNVRF 307 (523)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT-----TSC-TTTCCTTCCE
T ss_pred cEEEEeCCHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hhh-CCCCccCccE
Confidence 4899999999999999998764 578899999988654432 2345689999995 222 3568889999
Q ss_pred EEe
Q 008207 265 RVL 267 (574)
Q Consensus 265 lVl 267 (574)
||.
T Consensus 308 VI~ 310 (523)
T 1oyw_A 308 VVH 310 (523)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 210
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=77.52 E-value=8.7 Score=38.24 Aligned_cols=71 Identities=4% Similarity=0.098 Sum_probs=53.8
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHh----cCCCcEEEEChHHHHHhHhcCCccCCCce
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~ 263 (574)
.++||.++++.-+..+++.+... ++.+..++|+.+.......+ ....+|+|+|. .+. ..+++.+++
T Consensus 259 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~-~Gidip~~~ 328 (400)
T 1s2m_A 259 NQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLT-RGIDIQAVN 328 (400)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSS-SSCCCTTEE
T ss_pred CcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccc-cCCCccCCC
Confidence 46999999999999999998775 47788899998765544332 35689999993 333 356888999
Q ss_pred EEEec
Q 008207 264 FRVLD 268 (574)
Q Consensus 264 ~lVlD 268 (574)
+||.-
T Consensus 329 ~Vi~~ 333 (400)
T 1s2m_A 329 VVINF 333 (400)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 88853
No 211
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=77.42 E-value=1.5 Score=43.56 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=19.6
Q ss_pred HHHHHhcCCc--EEEEccCCChhHHHh
Q 008207 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (574)
Q Consensus 139 ~i~~il~~~d--vi~~a~TGsGKTla~ 163 (574)
.+..++.|.+ +++.|+||||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4455677877 778899999999864
No 212
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=77.09 E-value=2.4 Score=41.11 Aligned_cols=42 Identities=7% Similarity=-0.141 Sum_probs=27.4
Q ss_pred cEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHH
Q 008207 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (574)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa 200 (574)
-+++.+++|+|||...+-.+.+..... .+.+++++..-..+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g-----------~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY-----------PDAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC-----------TTCEEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC-----------CCceEEEEeccchhh
Confidence 588999999999986555555444321 122488887655443
No 213
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=76.72 E-value=8.4 Score=39.81 Aligned_cols=17 Identities=24% Similarity=0.200 Sum_probs=14.0
Q ss_pred CcEEEEccCCChhHHHh
Q 008207 147 SDLVGRARTGQGKTLAF 163 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (574)
.-+.+.|++|+|||...
T Consensus 294 eVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCcccHHHHH
Confidence 35779999999999854
No 214
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=76.68 E-value=8.8 Score=38.40 Aligned_cols=69 Identities=14% Similarity=0.220 Sum_probs=53.0
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHh----cCCCcEEEEChHHHHHhHhcCCccCCCceE
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~ 264 (574)
++||.|+++.-+..+++.+... ++.+..++|+.+.......+ .....|+|+|. .+. .++++.++++
T Consensus 278 ~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~-~Gidi~~v~~ 347 (410)
T 2j0s_A 278 QAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWA-RGLDVPQVSL 347 (410)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGS-SSCCCTTEEE
T ss_pred cEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh-CcCCcccCCE
Confidence 6999999999999999888764 57788899998765544332 35688999994 333 3578999999
Q ss_pred EEe
Q 008207 265 RVL 267 (574)
Q Consensus 265 lVl 267 (574)
||.
T Consensus 348 Vi~ 350 (410)
T 2j0s_A 348 IIN 350 (410)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 215
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=76.42 E-value=1.8 Score=41.74 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=16.8
Q ss_pred cCCcEEEEccCCChhHHHhHH
Q 008207 145 DGSDLVGRARTGQGKTLAFVL 165 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~l 165 (574)
.++-+++.|++|+|||.....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 466788999999999986443
No 216
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=76.16 E-value=2.8 Score=38.00 Aligned_cols=35 Identities=23% Similarity=0.156 Sum_probs=27.3
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHh
Q 008207 129 IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 129 ~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~ 163 (574)
+..-+.-|..++..+..|.-+.+.||.|||||+.+
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 33344456778888888999999999999999853
No 217
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=75.78 E-value=1.9 Score=42.17 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=19.3
Q ss_pred HHHHHhcCCc--EEEEccCCChhHHHh
Q 008207 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (574)
Q Consensus 139 ~i~~il~~~d--vi~~a~TGsGKTla~ 163 (574)
.+..++.|.+ ++..|+||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 3445667877 778899999999874
No 218
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=75.76 E-value=5.4 Score=44.68 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=15.2
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
..++++.||+|+|||...
T Consensus 191 ~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCCEEEECTTSCHHHHH
T ss_pred CCceEEEcCCCCCHHHHH
Confidence 357999999999999753
No 219
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=75.45 E-value=5.4 Score=37.60 Aligned_cols=43 Identities=19% Similarity=0.065 Sum_probs=31.1
Q ss_pred HHHHHHHHCCCCCCcHHHHH-HHHHHhcCC-----cEEEEccCCChhHHHhH
Q 008207 119 PLREKLKSKGIESLFPIQAM-TFDMVLDGS-----DLVGRARTGQGKTLAFV 164 (574)
Q Consensus 119 ~l~~~l~~~g~~~~~~~Q~~-~i~~il~~~-----dvi~~a~TGsGKTla~~ 164 (574)
.+.+.|+..||. |++-. ++..++.++ .+++.||+|+|||+.+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 677888888874 55533 345555543 49999999999998654
No 220
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=75.34 E-value=4.6 Score=38.63 Aligned_cols=19 Identities=26% Similarity=0.230 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
....+++.||+|+|||...
T Consensus 49 ~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3578999999999999753
No 221
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=75.18 E-value=3.5 Score=41.41 Aligned_cols=44 Identities=23% Similarity=0.372 Sum_probs=30.0
Q ss_pred hcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHH
Q 008207 144 LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (574)
Q Consensus 144 l~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa 200 (574)
..+.++++.|+||||||...-.-+.+.... +.+++|+=|..+..
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~-------------~~~~~~~D~~~~~~ 76 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAKMLLLREYMQ-------------GSRVIIIDPEREYK 76 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHHHHHHHHHTT-------------TCCEEEEESSCCSH
T ss_pred cccCceEEEcCCCCCHHHHHHHHHHHHHHC-------------CCEEEEEeCCcCHH
Confidence 357789999999999998654444433322 22478888886643
No 222
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=74.92 E-value=1.8 Score=42.58 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=18.6
Q ss_pred HHHHhcCCc--EEEEccCCChhHHHh
Q 008207 140 FDMVLDGSD--LVGRARTGQGKTLAF 163 (574)
Q Consensus 140 i~~il~~~d--vi~~a~TGsGKTla~ 163 (574)
+..++.|.+ +++.|+||||||.+.
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 344567776 678899999999874
No 223
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=74.82 E-value=3.5 Score=40.89 Aligned_cols=19 Identities=37% Similarity=0.403 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
....+++.||+|+|||..+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4568999999999999854
No 224
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=74.81 E-value=2 Score=43.34 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=19.1
Q ss_pred HHHHHhcCCc--EEEEccCCChhHHHh
Q 008207 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (574)
Q Consensus 139 ~i~~il~~~d--vi~~a~TGsGKTla~ 163 (574)
.+..++.|.+ +++.|+||||||.+.
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 3445667876 777899999999874
No 225
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=74.81 E-value=5.9 Score=42.94 Aligned_cols=69 Identities=12% Similarity=0.029 Sum_probs=48.7
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEE
Q 008207 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (574)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lV 266 (574)
+.++||.||+++-+..+++.+... ++.+..++|...............+|+|||. .+.+ .+++. +++||
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTd-----v~e~-GIDip-v~~VI 478 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSYDTEYPKCKNGDWDFVITTD-----ISEM-GANFG-ASRVI 478 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSHHHHGGGGGTCCCSEEEECG-----GGGT-TCCCC-CSEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHHHHHHHHHHCCCceEEEECc-----hhhc-ceeeC-CcEEE
Confidence 457999999999999998888654 6788889985332222222345689999993 4444 45777 77766
No 226
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=74.60 E-value=3.6 Score=42.85 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=24.8
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHH
Q 008207 129 IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 129 ~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla 162 (574)
+.--...=..++..+..+.++++.||+|+|||..
T Consensus 24 ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp CSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 3333344445556667889999999999999974
No 227
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.50 E-value=1.3 Score=45.29 Aligned_cols=54 Identities=17% Similarity=0.053 Sum_probs=34.2
Q ss_pred CCCCcccccCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHH
Q 008207 106 EHPNAVSRFRISVPLREKLKSKG---IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla 162 (574)
.+...|++.+--....+.|.+.= +..|--++...++ ..+-+|+.||+|+|||+.
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHH
Confidence 34467888887777777766431 1223233322221 246799999999999985
No 228
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=74.19 E-value=2.2 Score=42.17 Aligned_cols=24 Identities=38% Similarity=0.659 Sum_probs=18.6
Q ss_pred HHHHhcCCc--EEEEccCCChhHHHh
Q 008207 140 FDMVLDGSD--LVGRARTGQGKTLAF 163 (574)
Q Consensus 140 i~~il~~~d--vi~~a~TGsGKTla~ 163 (574)
+..++.|.+ ++..|+||||||.+.
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 344567776 778899999999864
No 229
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=74.18 E-value=2.2 Score=41.80 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=20.2
Q ss_pred HHHHHhcCCc--EEEEccCCChhHHHh
Q 008207 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (574)
Q Consensus 139 ~i~~il~~~d--vi~~a~TGsGKTla~ 163 (574)
.+..++.|.+ ++..|+||||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 5666778877 677899999999864
No 230
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=74.15 E-value=2.2 Score=42.45 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=18.7
Q ss_pred HHHHhcCCc--EEEEccCCChhHHHh
Q 008207 140 FDMVLDGSD--LVGRARTGQGKTLAF 163 (574)
Q Consensus 140 i~~il~~~d--vi~~a~TGsGKTla~ 163 (574)
+..++.|.+ ++..|+||||||.+.
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceEE
Confidence 344567876 677899999999874
No 231
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=74.11 E-value=4.5 Score=41.24 Aligned_cols=67 Identities=10% Similarity=-0.043 Sum_probs=48.1
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEE
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~l 265 (574)
.++||+||++.-+..+++.+... ++++..++|+..............+|+|||. .+.. .+++. +.+|
T Consensus 172 ~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~-----v~e~-GiDip-~~~V 238 (431)
T 2v6i_A 172 GRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD-----ISEM-GANFK-ADRV 238 (431)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG-----GGGT-SCCCC-CSEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc-----hHHc-CcccC-CcEE
Confidence 36999999999999999998775 5788899987543332333346789999994 4444 45665 5554
No 232
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=74.04 E-value=2.1 Score=42.28 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=20.5
Q ss_pred HHHHHhcCCc--EEEEccCCChhHHHh
Q 008207 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (574)
Q Consensus 139 ~i~~il~~~d--vi~~a~TGsGKTla~ 163 (574)
.+..++.|.+ +++.|+||||||.+.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 5667778887 677899999999875
No 233
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=74.01 E-value=2 Score=43.30 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=20.3
Q ss_pred HHHHHhcCCc--EEEEccCCChhHHHh
Q 008207 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (574)
Q Consensus 139 ~i~~il~~~d--vi~~a~TGsGKTla~ 163 (574)
.+..++.|.+ +++.|+||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5666778887 677899999999875
No 234
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=73.96 E-value=2.1 Score=42.38 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=18.6
Q ss_pred HHHHhcCCc--EEEEccCCChhHHHh
Q 008207 140 FDMVLDGSD--LVGRARTGQGKTLAF 163 (574)
Q Consensus 140 i~~il~~~d--vi~~a~TGsGKTla~ 163 (574)
+..++.|.+ ++..|+||||||.+.
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 344567776 778899999999864
No 235
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=73.84 E-value=17 Score=37.68 Aligned_cols=18 Identities=22% Similarity=0.134 Sum_probs=14.6
Q ss_pred cEEEEccCCChhHHHhHH
Q 008207 148 DLVGRARTGQGKTLAFVL 165 (574)
Q Consensus 148 dvi~~a~TGsGKTla~~l 165 (574)
.+++++++|+|||..+.-
T Consensus 103 vI~ivG~~GvGKTTl~~k 120 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSK 120 (504)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578889999999986443
No 236
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=73.80 E-value=2.2 Score=42.52 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=19.0
Q ss_pred HHHHHhcCCc--EEEEccCCChhHHHh
Q 008207 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (574)
Q Consensus 139 ~i~~il~~~d--vi~~a~TGsGKTla~ 163 (574)
.+..++.|.+ +++.|+||||||.+.
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 3445667876 677899999999864
No 237
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=73.70 E-value=2.2 Score=42.13 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=19.1
Q ss_pred HHHHHhcCCc--EEEEccCCChhHHHh
Q 008207 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (574)
Q Consensus 139 ~i~~il~~~d--vi~~a~TGsGKTla~ 163 (574)
.+..++.|.+ ++..|+||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 3445667876 777899999999864
No 238
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=73.63 E-value=2.3 Score=42.37 Aligned_cols=25 Identities=20% Similarity=0.517 Sum_probs=19.1
Q ss_pred HHHHHhcCCc--EEEEccCCChhHHHh
Q 008207 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (574)
Q Consensus 139 ~i~~il~~~d--vi~~a~TGsGKTla~ 163 (574)
.+..++.|.+ ++..|+||||||.+.
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 3445667876 777899999999764
No 239
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=73.61 E-value=2.2 Score=42.26 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=19.3
Q ss_pred HHHHHhcCCc--EEEEccCCChhHHHh
Q 008207 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (574)
Q Consensus 139 ~i~~il~~~d--vi~~a~TGsGKTla~ 163 (574)
.+..++.|.+ +++.|+||||||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 4455677877 677899999999864
No 240
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=73.61 E-value=2.2 Score=42.10 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=19.1
Q ss_pred HHHHHhcCCc--EEEEccCCChhHHHh
Q 008207 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (574)
Q Consensus 139 ~i~~il~~~d--vi~~a~TGsGKTla~ 163 (574)
.+..++.|.+ ++..|+||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 3445567877 678899999999874
No 241
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=73.60 E-value=2.3 Score=39.95 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=16.4
Q ss_pred hcCCcEEEEccCCChhHHH
Q 008207 144 LDGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 144 l~~~dvi~~a~TGsGKTla 162 (574)
..+..+++.|++|+|||..
T Consensus 27 ~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp TSCSCEEEECCTTSCHHHH
T ss_pred CCCCCEEEECCCCCcHHHH
Confidence 3567899999999999974
No 242
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=73.57 E-value=1.6 Score=41.29 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=17.5
Q ss_pred HhcCCcEEEEccCCChhHHHh
Q 008207 143 VLDGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 143 il~~~dvi~~a~TGsGKTla~ 163 (574)
+..|.-+++.||||||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 456778999999999999753
No 243
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=73.50 E-value=2.3 Score=42.16 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=19.2
Q ss_pred HHHHHhcCCc--EEEEccCCChhHHHh
Q 008207 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (574)
Q Consensus 139 ~i~~il~~~d--vi~~a~TGsGKTla~ 163 (574)
.+..++.|.+ +++.|+||||||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 3445667877 678899999999864
No 244
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=73.43 E-value=1.6 Score=38.50 Aligned_cols=19 Identities=21% Similarity=0.085 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
.|+-+++.||+|||||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677899999999999843
No 245
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=73.32 E-value=2.2 Score=42.38 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=19.2
Q ss_pred HHHHHhcCCc--EEEEccCCChhHHHh
Q 008207 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (574)
Q Consensus 139 ~i~~il~~~d--vi~~a~TGsGKTla~ 163 (574)
.+..++.|.+ +++.|+||||||.+.
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 3445667877 678899999999864
No 246
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=73.27 E-value=23 Score=31.47 Aligned_cols=67 Identities=13% Similarity=-0.013 Sum_probs=19.9
Q ss_pred hcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHh
Q 008207 144 LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (574)
Q Consensus 144 l~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (574)
+.|..+-+.+..|-|=|+.+.+|+...-...............+.++||+-........+...+..+
T Consensus 18 ~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~ 84 (206)
T 3mm4_A 18 SHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKM 84 (206)
T ss_dssp -------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHT
T ss_pred ccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 4567788899999999999999975432221111111112234568999998877777777767654
No 247
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=73.26 E-value=2.3 Score=42.14 Aligned_cols=25 Identities=24% Similarity=0.537 Sum_probs=19.4
Q ss_pred HHHHHhcCCc--EEEEccCCChhHHHh
Q 008207 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (574)
Q Consensus 139 ~i~~il~~~d--vi~~a~TGsGKTla~ 163 (574)
.+..++.|.+ ++..|+||||||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4455668877 677899999999874
No 248
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=72.95 E-value=2 Score=42.73 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=20.0
Q ss_pred HHHHHhcCCc--EEEEccCCChhHHHh
Q 008207 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (574)
Q Consensus 139 ~i~~il~~~d--vi~~a~TGsGKTla~ 163 (574)
.+..++.|.+ ++..|+||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5566778887 667899999999864
No 249
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=72.92 E-value=1.9 Score=42.24 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=19.2
Q ss_pred HHHHHhcCCcEEEEccCCChhHHH
Q 008207 139 TFDMVLDGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 139 ~i~~il~~~dvi~~a~TGsGKTla 162 (574)
+...+..++++++.||+|+|||..
T Consensus 39 l~~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 39 LLIGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHHHHTCCEEEESCCCHHHHHH
T ss_pred HHHHHHcCCeEEEECCCCCcHHHH
Confidence 334455688999999999999974
No 250
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=72.90 E-value=1.9 Score=42.54 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=19.9
Q ss_pred HHHHHhcCCc--EEEEccCCChhHHHh
Q 008207 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (574)
Q Consensus 139 ~i~~il~~~d--vi~~a~TGsGKTla~ 163 (574)
.+..++.|.+ ++..|+||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 4556678877 677899999999875
No 251
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=72.68 E-value=17 Score=36.76 Aligned_cols=73 Identities=22% Similarity=0.342 Sum_probs=50.8
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeC--------CcchHHHHHHh----cCCCcEEEEChHHHHHhHhcCC
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG--------GAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGN 256 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~g--------g~~~~~~~~~l----~~~~~IlV~Tp~~l~~~l~~~~ 256 (574)
++||.++++.-+..+++.+... ++.+..++| +.+...+...+ ....+|+|+|. .+. .+
T Consensus 363 k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-----~~~-~G 432 (494)
T 1wp9_A 363 KIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-----VGE-EG 432 (494)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-----GGG-GG
T ss_pred eEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-----ccc-cC
Confidence 5999999999999999988765 578888888 65544333222 35689999993 222 35
Q ss_pred ccCCCceEEEecCch
Q 008207 257 IDLSSLKFRVLDEAD 271 (574)
Q Consensus 257 ~~l~~~~~lVlDEah 271 (574)
+++..+++||+-+..
T Consensus 433 ldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 433 LDVPEVDLVVFYEPV 447 (494)
T ss_dssp GGSTTCCEEEESSCC
T ss_pred CCchhCCEEEEeCCC
Confidence 688889998865443
No 252
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=72.66 E-value=2.2 Score=42.50 Aligned_cols=20 Identities=35% Similarity=0.272 Sum_probs=17.5
Q ss_pred HhcCCcEEEEccCCChhHHH
Q 008207 143 VLDGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 143 il~~~dvi~~a~TGsGKTla 162 (574)
+..|..+++.|+||||||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 44789999999999999984
No 253
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=72.65 E-value=2.2 Score=43.15 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=20.4
Q ss_pred HHHHHhcCCc--EEEEccCCChhHHHh
Q 008207 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (574)
Q Consensus 139 ~i~~il~~~d--vi~~a~TGsGKTla~ 163 (574)
.+..++.|.+ +++.|+||||||.+.
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 5667778887 677899999999874
No 254
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=75.02 E-value=0.74 Score=40.27 Aligned_cols=70 Identities=17% Similarity=0.272 Sum_probs=48.9
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHh----cCCCcEEEEChHHHHHhHhcCCccCCCceE
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~ 264 (574)
++||.|+++.-+..+++.+... ++.+..++|+.+.......+ ....+|+|+|. .+.+ .+++..+++
T Consensus 32 ~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~-Gid~~~~~~ 101 (170)
T 2yjt_D 32 RSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAAR-GIDIPDVSH 101 (170)
Confidence 5899999999999988888654 57778888887654443332 23578999992 2222 456777777
Q ss_pred EEec
Q 008207 265 RVLD 268 (574)
Q Consensus 265 lVlD 268 (574)
||.-
T Consensus 102 Vi~~ 105 (170)
T 2yjt_D 102 VFNF 105 (170)
Confidence 7653
No 255
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=72.56 E-value=2.4 Score=42.43 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=19.3
Q ss_pred HHHHHhcCCc--EEEEccCCChhHHHh
Q 008207 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (574)
Q Consensus 139 ~i~~il~~~d--vi~~a~TGsGKTla~ 163 (574)
.+..++.|.+ +++.|+||||||.+.
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 3445667876 778899999999874
No 256
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=72.28 E-value=2.2 Score=42.74 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=18.1
Q ss_pred HHHhcCCc--EEEEccCCChhHHHh
Q 008207 141 DMVLDGSD--LVGRARTGQGKTLAF 163 (574)
Q Consensus 141 ~~il~~~d--vi~~a~TGsGKTla~ 163 (574)
..++.|.+ ++..|+||||||.+.
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 44567876 677899999999864
No 257
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=72.20 E-value=2.3 Score=42.40 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=18.5
Q ss_pred HHHHhcCCc--EEEEccCCChhHHHh
Q 008207 140 FDMVLDGSD--LVGRARTGQGKTLAF 163 (574)
Q Consensus 140 i~~il~~~d--vi~~a~TGsGKTla~ 163 (574)
+..++.|.+ +++.|+||||||.+.
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCceEEEEeecCCCCCcceec
Confidence 344567776 778899999999864
No 258
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=72.16 E-value=10 Score=37.41 Aligned_cols=22 Identities=18% Similarity=-0.093 Sum_probs=16.8
Q ss_pred cCCcEEEEccCCChhHHHhHHH
Q 008207 145 DGSDLVGRARTGQGKTLAFVLP 166 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lp 166 (574)
.|.-+.+.|++|||||......
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l 151 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTL 151 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3466889999999999754443
No 259
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=72.00 E-value=6.7 Score=37.88 Aligned_cols=19 Identities=21% Similarity=0.097 Sum_probs=15.1
Q ss_pred CCcEEEEccCCChhHHHhH
Q 008207 146 GSDLVGRARTGQGKTLAFV 164 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~ 164 (574)
++-+++.+++|+|||....
T Consensus 104 ~~vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHH
Confidence 4568899999999997543
No 260
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=71.79 E-value=38 Score=34.25 Aligned_cols=21 Identities=24% Similarity=0.098 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCChhHHHhHH
Q 008207 145 DGSDLVGRARTGQGKTLAFVL 165 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~l 165 (574)
.++-+++.+++|+|||.....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~ 117 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAK 117 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 345677889999999985433
No 261
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=71.73 E-value=8.4 Score=39.46 Aligned_cols=67 Identities=10% Similarity=0.021 Sum_probs=48.5
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEE
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lV 266 (574)
++||.+|++.-+.++++.+... ++.+..++|...............+|+|||. .+.+ .+++.. ++||
T Consensus 190 ~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~-----v~~~-GiDip~-~~VI 256 (451)
T 2jlq_A 190 KTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEM-GANFRA-GRVI 256 (451)
T ss_dssp CEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHHHGGGGGSSCCSEEEECG-----GGGS-SCCCCC-SEEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHHHHHhhccCCceEEEECC-----HHHh-CcCCCC-CEEE
Confidence 6999999999999999888654 5778888887654332333345789999993 4444 457777 6665
No 262
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=71.06 E-value=1.5 Score=42.47 Aligned_cols=55 Identities=11% Similarity=-0.013 Sum_probs=29.9
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEccCCChhHHHh
Q 008207 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-il~~~dvi~~a~TGsGKTla~ 163 (574)
...|+++.-.....+.|...-. .|.......... +..++.+++.||+|+|||+..
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~-~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQ-YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH-HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHH-HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 3457777656666665554200 000000011111 234678999999999999853
No 263
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=70.71 E-value=6.3 Score=38.21 Aligned_cols=51 Identities=16% Similarity=-0.066 Sum_probs=31.0
Q ss_pred hcCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHH
Q 008207 144 LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (574)
Q Consensus 144 l~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~ 208 (574)
..|.-+++.|++|+|||...+-.+.+....+ ..+++++.- .-..|+...+.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g-------------~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDND-------------DVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTT-------------CEEEEEESS-SCHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-------------CeEEEEECC-CCHHHHHHHHH
Confidence 3566799999999999965444444443322 247887643 33445544443
No 264
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=70.69 E-value=2.8 Score=42.77 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=19.1
Q ss_pred HHHHHhcCCc--EEEEccCCChhHHHh
Q 008207 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (574)
Q Consensus 139 ~i~~il~~~d--vi~~a~TGsGKTla~ 163 (574)
.+..++.|.+ ++..|+||||||.+.
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 3444567877 778899999999864
No 265
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=70.44 E-value=2.5 Score=42.12 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=19.8
Q ss_pred HHHHHhcCCc--EEEEccCCChhHHHh
Q 008207 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (574)
Q Consensus 139 ~i~~il~~~d--vi~~a~TGsGKTla~ 163 (574)
.+..++.|.+ +++.|+||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 4566778877 677899999999864
No 266
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=70.31 E-value=3.6 Score=41.79 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=19.4
Q ss_pred HHHHHHHHHh--cCCcEEEEccCCChhHHH
Q 008207 135 IQAMTFDMVL--DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 135 ~Q~~~i~~il--~~~dvi~~a~TGsGKTla 162 (574)
-+...+..++ .|.-+++.||||||||..
T Consensus 154 ~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 154 HNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 3444554443 345688999999999985
No 267
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=70.27 E-value=14 Score=40.66 Aligned_cols=75 Identities=24% Similarity=0.344 Sum_probs=55.5
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHh-------hCCCCceEEEEeCCcchHHHHHHhc---------CCCcEEEEChHHHHH
Q 008207 187 APSVLVLLPTRELAKQVHEDFDVY-------GGAVGLTSCCLYGGAPYHAQEFKLK---------KGIDVVIGTPGRIKD 250 (574)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~-------~~~~~~~~~~~~gg~~~~~~~~~l~---------~~~~IlV~Tp~~l~~ 250 (574)
..++||.+|++.-+..+++.+... ....++.+..++|+.+...+...+. ....|||||.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 346999999999999999888752 2335788999999998876655442 2468999994
Q ss_pred hHhcCCccCCCceEEEe
Q 008207 251 HIERGNIDLSSLKFRVL 267 (574)
Q Consensus 251 ~l~~~~~~l~~~~~lVl 267 (574)
.+.. .+++.++.+||-
T Consensus 378 iae~-GidIp~v~~VId 393 (773)
T 2xau_A 378 IAET-SLTIDGIVYVVD 393 (773)
T ss_dssp HHHH-TCCCTTEEEEEE
T ss_pred HHHh-CcCcCCeEEEEe
Confidence 3333 468888988773
No 268
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=70.24 E-value=2.1 Score=38.37 Aligned_cols=19 Identities=21% Similarity=0.043 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
.++.+++.|++|||||...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 5778999999999999853
No 269
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=68.85 E-value=2.5 Score=41.48 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=17.3
Q ss_pred HhcCCcEEEEccCCChhHHH
Q 008207 143 VLDGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 143 il~~~dvi~~a~TGsGKTla 162 (574)
+..|..+++.|+||||||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 34789999999999999983
No 270
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=68.76 E-value=42 Score=31.96 Aligned_cols=20 Identities=20% Similarity=0.013 Sum_probs=15.3
Q ss_pred CCcEEEEccCCChhHHHhHH
Q 008207 146 GSDLVGRARTGQGKTLAFVL 165 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~l 165 (574)
+.-+++.+++|+|||.....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45677889999999975433
No 271
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=68.52 E-value=6.5 Score=45.77 Aligned_cols=47 Identities=21% Similarity=0.396 Sum_probs=31.1
Q ss_pred EEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHH
Q 008207 150 VGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (574)
Q Consensus 150 i~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~ 207 (574)
+|.|..|||||.+.+--+...+..+. .+.++|+|+|.. +..+..+.+
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~----------~~~~il~lVP~q-~TFt~~~rl 51 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAP----------FGKPIIFLVPDQ-MTFLMEYEL 51 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCT----------TSSCEEEECCGG-GHHHHHHHH
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCC----------CCCcEEEEecCc-ccHHHHHHH
Confidence 68899999999987666666555432 123599999985 334433333
No 272
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=68.47 E-value=3 Score=37.68 Aligned_cols=19 Identities=26% Similarity=0.218 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
.|+-+++.||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4667899999999999853
No 273
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=68.45 E-value=2.9 Score=37.42 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=15.0
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
.|+-+.+.||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999853
No 274
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=67.89 E-value=2.5 Score=37.16 Aligned_cols=18 Identities=22% Similarity=0.065 Sum_probs=15.5
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
++.+++.|++|||||...
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 567999999999999854
No 275
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=67.84 E-value=2 Score=37.72 Aligned_cols=21 Identities=19% Similarity=0.088 Sum_probs=17.2
Q ss_pred hcCCcEEEEccCCChhHHHhH
Q 008207 144 LDGSDLVGRARTGQGKTLAFV 164 (574)
Q Consensus 144 l~~~dvi~~a~TGsGKTla~~ 164 (574)
..++.+++.|++|||||...-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 356789999999999998543
No 276
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=67.67 E-value=2.6 Score=41.29 Aligned_cols=17 Identities=35% Similarity=0.266 Sum_probs=14.4
Q ss_pred CCcEEEEccCCChhHHH
Q 008207 146 GSDLVGRARTGQGKTLA 162 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla 162 (574)
++-+++.||||||||..
T Consensus 40 ~~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRL 56 (339)
T ss_dssp CEEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 34689999999999975
No 277
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=67.52 E-value=2.4 Score=38.15 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=17.5
Q ss_pred HhcCCcEEEEccCCChhHHHh
Q 008207 143 VLDGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 143 il~~~dvi~~a~TGsGKTla~ 163 (574)
+..|+-++++|++|||||...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 456788999999999999843
No 278
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=67.49 E-value=20 Score=37.05 Aligned_cols=74 Identities=11% Similarity=0.099 Sum_probs=52.2
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHH----hcCCCcEEEEChHHHHHhHhcCCccCCCceE
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK----LKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~----l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~ 264 (574)
+.+|++.+..-+..+++.+...+ .++..++|+++....... .....+|+|||+..+-. ++++.++++
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~~----~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~~ 419 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNEY----DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLHH 419 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTC----SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEEE
T ss_pred CeEEEEecHHHHHHHHHHHHHcC----CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCcE
Confidence 35566666666666766665433 478889999876543322 24567999999877754 578999999
Q ss_pred EEecCch
Q 008207 265 RVLDEAD 271 (574)
Q Consensus 265 lVlDEah 271 (574)
||+..+.
T Consensus 420 vi~~~~~ 426 (510)
T 2oca_A 420 VVLAHGV 426 (510)
T ss_dssp EEESSCC
T ss_pred EEEeCCC
Confidence 9998776
No 279
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=67.46 E-value=6.3 Score=35.60 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=29.6
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHhcC----CcEEEEccCCChhHHHhHHHHHHHH
Q 008207 119 PLREKLKSKGIESLFPIQAMTFDMVLDG----SDLVGRARTGQGKTLAFVLPILESL 171 (574)
Q Consensus 119 ~l~~~l~~~g~~~~~~~Q~~~i~~il~~----~dvi~~a~TGsGKTla~~lpil~~l 171 (574)
.+.+-|.-.|+ .+..+ ...+..++.+ +.+++.||+|+|||..+ ..++..+
T Consensus 29 ~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 29 PIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp HHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred HHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 55566665554 33333 3444444443 35999999999999754 3444433
No 280
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=67.15 E-value=3.7 Score=39.68 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=16.7
Q ss_pred hcCCcEEEEccCCChhHHHh
Q 008207 144 LDGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 144 l~~~dvi~~a~TGsGKTla~ 163 (574)
.....+++.|++|+|||..+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 35678999999999999753
No 281
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=67.05 E-value=2.9 Score=37.58 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCChhHHH
Q 008207 145 DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla 162 (574)
.|+-+++.|+||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 456799999999999864
No 282
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=67.03 E-value=2.6 Score=37.74 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=16.6
Q ss_pred hcCCcEEEEccCCChhHHHh
Q 008207 144 LDGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 144 l~~~dvi~~a~TGsGKTla~ 163 (574)
..|.-+++.|++|||||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35777899999999999853
No 283
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=66.98 E-value=9.8 Score=34.96 Aligned_cols=68 Identities=13% Similarity=0.186 Sum_probs=48.6
Q ss_pred CCCeEEEEecChHHHHHHHHhCC--------CCccccccCCHHHHHHHHHHHhCCCccEEEEecc-----cc-ccCCCCC
Q 008207 362 SGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV-----AA-RGLDIND 427 (574)
Q Consensus 362 ~~~~~lVF~~t~~~~~~l~~~l~--------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~-----~~-~Gldi~~ 427 (574)
.+.++||.+++++-+..+.+.+. .+..++|+.+...+...+.. ..+|+|+|.- +. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 45679999999998887766554 45678888887766555432 4799999952 22 3457888
Q ss_pred CcEEEE
Q 008207 428 VQLIIQ 433 (574)
Q Consensus 428 v~~VI~ 433 (574)
+++||.
T Consensus 177 ~~~lVi 182 (242)
T 3fe2_A 177 TTYLVL 182 (242)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 888874
No 284
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=66.68 E-value=2 Score=38.05 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=16.6
Q ss_pred HhcCCcEEEEccCCChhHHH
Q 008207 143 VLDGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 143 il~~~dvi~~a~TGsGKTla 162 (574)
+..|.-+++.|++|||||..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH
Confidence 34577799999999999984
No 285
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=66.51 E-value=2.6 Score=40.90 Aligned_cols=17 Identities=24% Similarity=0.014 Sum_probs=13.8
Q ss_pred CcEEEEccCCChhHHHh
Q 008207 147 SDLVGRARTGQGKTLAF 163 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (574)
+-+++.||||||||...
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 34788999999999753
No 286
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=66.50 E-value=2.5 Score=40.52 Aligned_cols=19 Identities=32% Similarity=0.317 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
.++.+++.||+|+|||...
T Consensus 53 ~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCSEEEEESSSSSCHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 3578999999999999854
No 287
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=66.44 E-value=2.6 Score=39.33 Aligned_cols=19 Identities=26% Similarity=0.114 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
..+.+++.||+|+|||...
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3467999999999999753
No 288
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=66.36 E-value=2.6 Score=40.77 Aligned_cols=16 Identities=25% Similarity=0.146 Sum_probs=13.4
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
-++++||||||||...
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4788999999999753
No 289
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=66.12 E-value=2.6 Score=36.36 Aligned_cols=16 Identities=19% Similarity=0.140 Sum_probs=13.5
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
-+++.|++|||||...
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 290
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=66.09 E-value=2.6 Score=42.08 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=17.1
Q ss_pred HhcCCcEEEEccCCChhHHHh
Q 008207 143 VLDGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 143 il~~~dvi~~a~TGsGKTla~ 163 (574)
+..|.-+++.||||||||...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 346778999999999999853
No 291
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=66.02 E-value=2.8 Score=36.44 Aligned_cols=18 Identities=11% Similarity=0.093 Sum_probs=15.1
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
+.-++++|++|||||...
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999853
No 292
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=65.92 E-value=8.5 Score=46.08 Aligned_cols=91 Identities=13% Similarity=0.108 Sum_probs=55.0
Q ss_pred CCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCc
Q 008207 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA 225 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~ 225 (574)
|+-+.+.+|.|||||...+-.+.+....+. .|+++.+--+|.... ++.++-. +
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~g~-------------~~~~i~~e~~~~~~~---~~~~Gv~--~--------- 1483 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQREGK-------------TCAFIDAEHALDPIY---ARKLGVD--I--------- 1483 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTC-------------CEEEECTTSCCCHHH---HHHTTCC--G---------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCC-------------eEEEEecCCCCCHHH---HHHcCCC--H---------
Confidence 477999999999999876655555555543 378888766665543 4444422 1
Q ss_pred chHHHHHHhcCCCcEEEEChHHHHHhHhc--CCccCCCceEEEecCchhhhc
Q 008207 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIER--GNIDLSSLKFRVLDEADEMLR 275 (574)
Q Consensus 226 ~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~--~~~~l~~~~~lVlDEah~~l~ 275 (574)
-+++|.-|..--++|.- ..+.-..+++||||.+..+..
T Consensus 1484 ------------~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1484 ------------DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp ------------GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred ------------HHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 23666666443222211 011223477999999988753
No 293
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=65.75 E-value=14 Score=34.24 Aligned_cols=68 Identities=18% Similarity=0.319 Sum_probs=47.4
Q ss_pred CCCeEEEEecChHHHHHHHHhCC--------CCccccccCCHHHHHHHHHHHhCCCccEEEEecc-----c--cccCCCC
Q 008207 362 SGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV-----A--ARGLDIN 426 (574)
Q Consensus 362 ~~~~~lVF~~t~~~~~~l~~~l~--------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~-----~--~~Gldi~ 426 (574)
.+.++||.++++.-+..+++.+. .+..++|+.....+...+ .+...|+|+|.- + ..++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 34679999999998877775553 456678888765544333 246899999952 1 1456788
Q ss_pred CCcEEEE
Q 008207 427 DVQLIIQ 433 (574)
Q Consensus 427 ~v~~VI~ 433 (574)
.+++||.
T Consensus 186 ~~~~lVi 192 (249)
T 3ber_A 186 ALKYLVM 192 (249)
T ss_dssp TCCEEEE
T ss_pred ccCEEEE
Confidence 8888774
No 294
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=65.62 E-value=3.9 Score=40.48 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=15.9
Q ss_pred cCCc--EEEEccCCChhHHHh
Q 008207 145 DGSD--LVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~d--vi~~a~TGsGKTla~ 163 (574)
.|.+ ++..|+||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4776 689999999999864
No 295
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=65.48 E-value=3.1 Score=41.25 Aligned_cols=18 Identities=22% Similarity=0.267 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCChhHHH
Q 008207 145 DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla 162 (574)
.+.-+++.||||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455799999999999975
No 296
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=65.15 E-value=3 Score=37.22 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
.|.-+.+.||+|||||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5677889999999999853
No 297
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=65.03 E-value=11 Score=43.87 Aligned_cols=61 Identities=16% Similarity=0.095 Sum_probs=40.7
Q ss_pred cEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHH
Q 008207 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (574)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (574)
..+|.|.-|||||.+...-++..+...... .........-++|+|+=|+.-|..+.+.+..
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~-~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGS-AAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSS-SSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcc-cccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 459999999999998777777777542100 0000011233699999999888888777653
No 298
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=64.99 E-value=18 Score=37.58 Aligned_cols=73 Identities=19% Similarity=0.288 Sum_probs=45.6
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeC--------CcchHHHHHH---hc--CCCcEEEEChHHHHHhHhcC
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG--------GAPYHAQEFK---LK--KGIDVVIGTPGRIKDHIERG 255 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~g--------g~~~~~~~~~---l~--~~~~IlV~Tp~~l~~~l~~~ 255 (574)
++||.|+++..+..+++.+...+...++.+..++| +++...+... +. ...+|+|||. .+. .
T Consensus 391 k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~~~-~ 464 (555)
T 3tbk_A 391 KTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATS-----VAD-E 464 (555)
T ss_dssp CEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECC-----CTT-C
T ss_pred eEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcc-----hhh-c
Confidence 59999999999999999998765444455555555 4444333222 22 4579999994 333 3
Q ss_pred CccCCCceEEEe
Q 008207 256 NIDLSSLKFRVL 267 (574)
Q Consensus 256 ~~~l~~~~~lVl 267 (574)
++++.++++||.
T Consensus 465 GlDlp~v~~VI~ 476 (555)
T 3tbk_A 465 GIDIAECNLVIL 476 (555)
T ss_dssp CEETTSCSEEEE
T ss_pred CCccccCCEEEE
Confidence 568888888875
No 299
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.86 E-value=2.8 Score=42.86 Aligned_cols=52 Identities=19% Similarity=0.035 Sum_probs=30.5
Q ss_pred CcccccCCCHHHHHHHHHCCC---CCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHh
Q 008207 109 NAVSRFRISVPLREKLKSKGI---ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~---~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~ 163 (574)
-.|++.+--....+.|.+.=. ..|--++... +..-+-+|+.||+|+|||+.+
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHH
Confidence 467777766666666655311 1111111111 123467999999999999853
No 300
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=64.83 E-value=2.7 Score=39.36 Aligned_cols=16 Identities=25% Similarity=-0.097 Sum_probs=13.3
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
-++++|+||||||...
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3689999999999753
No 301
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=64.51 E-value=6.6 Score=38.85 Aligned_cols=28 Identities=18% Similarity=0.019 Sum_probs=20.7
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~ 172 (574)
.|.-+++.|++|+|||...+..+.+...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~ 89 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR 89 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4677999999999999865554444443
No 302
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=64.47 E-value=6.4 Score=38.83 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=20.5
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~ 172 (574)
.|.-+++.|++|+|||...+..+.....
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~ 87 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA 87 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4677999999999999865554444443
No 303
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=64.39 E-value=2.2 Score=39.85 Aligned_cols=53 Identities=15% Similarity=0.011 Sum_probs=29.1
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh--cCCcEEEEccCCChhHHH
Q 008207 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVL--DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il--~~~dvi~~a~TGsGKTla 162 (574)
....|+++.-.+.....+...-.. .. ....+..+- -.+.+++.||+|+|||..
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 345677776666666555543110 00 012222211 123499999999999974
No 304
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=64.34 E-value=3.3 Score=36.57 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=14.0
Q ss_pred CcEEEEccCCChhHHHh
Q 008207 147 SDLVGRARTGQGKTLAF 163 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (574)
+-+.+.||+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45788999999999843
No 305
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=64.27 E-value=3.4 Score=37.67 Aligned_cols=19 Identities=26% Similarity=0.093 Sum_probs=16.1
Q ss_pred hcCCcEEEEccCCChhHHH
Q 008207 144 LDGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 144 l~~~dvi~~a~TGsGKTla 162 (574)
..|+-+.+.||+|+|||..
T Consensus 21 ~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4678899999999999984
No 306
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=64.07 E-value=4.2 Score=36.53 Aligned_cols=19 Identities=21% Similarity=0.197 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
.|+-+++.||+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 6788999999999999843
No 307
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=63.96 E-value=3 Score=39.02 Aligned_cols=53 Identities=13% Similarity=0.031 Sum_probs=27.8
Q ss_pred CCcccccCCCHHHHHHHHHCC--CCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHh
Q 008207 108 PNAVSRFRISVPLREKLKSKG--IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g--~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~ 163 (574)
+..|+++.-.+...+.+...- +..+..++... ....+.+++.||+|+|||...
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHHH
Confidence 456777766666665554320 00111111100 012356999999999999753
No 308
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=63.86 E-value=17 Score=38.80 Aligned_cols=68 Identities=10% Similarity=0.002 Sum_probs=48.4
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEE
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lV 266 (574)
.++||.++|+.-+..+++.+... ++.+..++|...............+|+|||. .+.+ .+++. +++||
T Consensus 356 ~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTd-----v~~r-GiDi~-v~~VI 423 (618)
T 2whx_A 356 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEM-GANFR-AGRVI 423 (618)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHHHHTTHHHHSCCSEEEECG-----GGGT-TCCCC-CSEEE
T ss_pred CCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHHHHHHhhcCCCcEEEEECc-----HHHc-CcccC-ceEEE
Confidence 36999999999999999998765 5778888886433222233345789999994 4444 45674 77764
No 309
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=63.70 E-value=3.4 Score=36.40 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
.+..+++.|++|||||.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667999999999999854
No 310
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=63.37 E-value=3.6 Score=35.59 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=14.9
Q ss_pred CCcEEEEccCCChhHHH
Q 008207 146 GSDLVGRARTGQGKTLA 162 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla 162 (574)
+..+++.|+.|||||..
T Consensus 4 ~~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCCEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56789999999999984
No 311
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=63.25 E-value=9.1 Score=39.83 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=19.9
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHH
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESL 171 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l 171 (574)
.+.++++.|.||||||.+.-..++..+
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999986544443333
No 312
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.51 E-value=3.3 Score=41.63 Aligned_cols=53 Identities=11% Similarity=0.054 Sum_probs=30.8
Q ss_pred CCCcccccCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHH
Q 008207 107 HPNAVSRFRISVPLREKLKSKG---IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla 162 (574)
+.-.|++.+=-....+.|.+.= +..|--++...+ ...+-+|+.||+|+|||+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHH
Confidence 3456788775556666665431 111212222111 1246799999999999985
No 313
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=62.42 E-value=3.1 Score=36.23 Aligned_cols=20 Identities=25% Similarity=0.122 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCChhHHHhH
Q 008207 145 DGSDLVGRARTGQGKTLAFV 164 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~ 164 (574)
.|.-+.+.|++|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 46668899999999998544
No 314
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=61.71 E-value=3.4 Score=40.27 Aligned_cols=50 Identities=22% Similarity=0.165 Sum_probs=28.7
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHH-----hcCCcEEEEccCCChhHHHh
Q 008207 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMV-----LDGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i-----l~~~dvi~~a~TGsGKTla~ 163 (574)
...|++++--....+.|...-. .|.+ .|.+ ...+.+++.||+|+|||+..
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 3457777666666666553200 0111 0111 12367999999999999853
No 315
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=61.65 E-value=15 Score=32.94 Aligned_cols=68 Identities=15% Similarity=0.214 Sum_probs=47.2
Q ss_pred CCeEEEEecChHHHHHHHHhCC---------CCccccccCCHHHHHHHHHHHhCCCccEEEEecc-c-----cccCCCCC
Q 008207 363 GGRTIIFTETKESASQLADLLP---------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV-A-----ARGLDIND 427 (574)
Q Consensus 363 ~~~~lVF~~t~~~~~~l~~~l~---------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~-~-----~~Gldi~~ 427 (574)
+.++||.++++.-+..+++.+. .+..++|+.+...+... +..+..+|+|+|.- + ...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 3489999999988776654432 45568888876655443 44567899999952 1 23467788
Q ss_pred CcEEEE
Q 008207 428 VQLIIQ 433 (574)
Q Consensus 428 v~~VI~ 433 (574)
+++||.
T Consensus 159 ~~~lVi 164 (220)
T 1t6n_A 159 IKHFIL 164 (220)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888875
No 316
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=61.52 E-value=14 Score=33.78 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=39.6
Q ss_pred CCCeEEEEecChHHHHHHHHhCC--------CCccccccCCHHHHHHHHHHHhCCCccEEEEec-----cccc-cCCCCC
Q 008207 362 SGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN-----VAAR-GLDIND 427 (574)
Q Consensus 362 ~~~~~lVF~~t~~~~~~l~~~l~--------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd-----~~~~-Gldi~~ 427 (574)
.+.++||.++++.-+..++..+. .+..++|+.... .....+..+...|+|+|. .+.+ .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR---NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchH---HHHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 45689999999998877776654 233455554432 333455567789999994 2333 466777
Q ss_pred CcEEEE
Q 008207 428 VQLIIQ 433 (574)
Q Consensus 428 v~~VI~ 433 (574)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 888774
No 317
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=61.48 E-value=3.6 Score=35.75 Aligned_cols=16 Identities=19% Similarity=0.140 Sum_probs=13.5
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
-+++.|++|||||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999853
No 318
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=61.41 E-value=13 Score=32.85 Aligned_cols=68 Identities=25% Similarity=0.245 Sum_probs=46.2
Q ss_pred CCCeEEEEecChHHHHHHHHhCC------CCccccccCCHHHHHHHHHHHhCCCccEEEEecc-----c-cccCCCCCCc
Q 008207 362 SGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV-----A-ARGLDINDVQ 429 (574)
Q Consensus 362 ~~~~~lVF~~t~~~~~~l~~~l~------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~-----~-~~Gldi~~v~ 429 (574)
.+.++||.++++.-+..+.+.+. .+..++|+.....+...+. ....|+|+|.- + ...+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 45689999999888777766554 4556788777555444332 25789999952 1 2346677888
Q ss_pred EEEE
Q 008207 430 LIIQ 433 (574)
Q Consensus 430 ~VI~ 433 (574)
+||.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8775
No 319
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=61.26 E-value=3.9 Score=35.93 Aligned_cols=18 Identities=22% Similarity=0.172 Sum_probs=15.2
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
+.-+++.|++|||||...
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 566899999999999853
No 320
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=61.23 E-value=4 Score=36.72 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=16.7
Q ss_pred HHhcCCcEEEEccCCChhHHHh
Q 008207 142 MVLDGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 142 ~il~~~dvi~~a~TGsGKTla~ 163 (574)
.+..|.-+.+.||+|||||..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4567888999999999999843
No 321
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=61.07 E-value=8.1 Score=38.39 Aligned_cols=27 Identities=15% Similarity=0.006 Sum_probs=19.3
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHH
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESL 171 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l 171 (574)
.|.-+++.|++|+|||...+-.+.+..
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH
Confidence 456789999999999975444444433
No 322
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=60.88 E-value=3.4 Score=39.68 Aligned_cols=17 Identities=29% Similarity=0.196 Sum_probs=14.3
Q ss_pred CcEEEEccCCChhHHHh
Q 008207 147 SDLVGRARTGQGKTLAF 163 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (574)
+.+++.||+|+|||...
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999753
No 323
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=60.87 E-value=4.1 Score=36.42 Aligned_cols=19 Identities=26% Similarity=0.235 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
.|.-+++.|+.|||||...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4678999999999999853
No 324
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=60.74 E-value=4.1 Score=37.25 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=16.5
Q ss_pred HhcCCcEEEEccCCChhHHHh
Q 008207 143 VLDGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 143 il~~~dvi~~a~TGsGKTla~ 163 (574)
+-.|.-+++.||.|+|||..+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 446788999999999999843
No 325
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=60.71 E-value=4.3 Score=36.04 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=13.9
Q ss_pred CcEEEEccCCChhHHH
Q 008207 147 SDLVGRARTGQGKTLA 162 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla 162 (574)
+-++++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999974
No 326
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=60.19 E-value=17 Score=33.04 Aligned_cols=67 Identities=21% Similarity=0.276 Sum_probs=43.6
Q ss_pred CCCeEEEEecChHHHHHHHHhCC--------CCccccccCCHHHHHHHHHHHhCCCccEEEEecc-c----cc--cCCCC
Q 008207 362 SGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV-A----AR--GLDIN 426 (574)
Q Consensus 362 ~~~~~lVF~~t~~~~~~l~~~l~--------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~-~----~~--Gldi~ 426 (574)
.+.++||.++++.-+..+...+. .+..++|+.+.......+ +..+|+|+|.- + .+ .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 46789999999988877766553 445678877655443332 46799999952 1 12 36667
Q ss_pred CCcEEEE
Q 008207 427 DVQLIIQ 433 (574)
Q Consensus 427 ~v~~VI~ 433 (574)
++++||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 7777774
No 327
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=60.06 E-value=17 Score=34.91 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=48.2
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHh----cCCCcEEEEChHHHHHhHhcCCccCCCce
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~ 263 (574)
.++||.+++++-+..+++.+. .+..++|+.+.......+ ....+|+|+|. .+. .++++.+++
T Consensus 221 ~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gid~~~~~ 286 (337)
T 2z0m_A 221 KGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VAS-RGLDIPLVE 286 (337)
T ss_dssp SSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HHH-TTCCCCCBS
T ss_pred CcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----ccc-cCCCccCCC
Confidence 359999999998887766553 466788887765544332 35689999994 333 356889999
Q ss_pred EEEecC
Q 008207 264 FRVLDE 269 (574)
Q Consensus 264 ~lVlDE 269 (574)
+||.-.
T Consensus 287 ~Vi~~~ 292 (337)
T 2z0m_A 287 KVINFD 292 (337)
T ss_dssp EEEESS
T ss_pred EEEEec
Confidence 988643
No 328
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=59.99 E-value=3.9 Score=35.19 Aligned_cols=16 Identities=6% Similarity=-0.224 Sum_probs=13.6
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
-+++.|+.|||||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 329
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=59.85 E-value=25 Score=37.97 Aligned_cols=73 Identities=19% Similarity=0.279 Sum_probs=54.3
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchH---HHHHHhc---CCCcEEEEChHHHHHhHhcCCccCCCce
Q 008207 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYH---AQEFKLK---KGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (574)
Q Consensus 190 ~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~---~~~~~l~---~~~~IlV~Tp~~l~~~l~~~~~~l~~~~ 263 (574)
.+|+++++.-+.++++.+... ++.+..++|+.+.. .+...+. ...+|+|||. .+.+ ++++ +++
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e~-GlDi-~v~ 391 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIGM-GLNL-SIR 391 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGGS-SCCC-CBS
T ss_pred CEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHHC-CcCc-Ccc
Confidence 467799999888888888764 57889999999876 3344444 4579999995 4444 5678 899
Q ss_pred EEEecCchhh
Q 008207 264 FRVLDEADEM 273 (574)
Q Consensus 264 ~lVlDEah~~ 273 (574)
+||.-...+.
T Consensus 392 ~VI~~~~~k~ 401 (677)
T 3rc3_A 392 RIIFYSLIKP 401 (677)
T ss_dssp EEEESCSBC-
T ss_pred EEEECCcccc
Confidence 9998877653
No 330
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=59.60 E-value=7.6 Score=49.41 Aligned_cols=48 Identities=13% Similarity=0.129 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHH-HHHH---HHHhcCCcEEEEccCCChhHHHhH
Q 008207 116 ISVPLREKLKSKGIESLFPIQ-AMTF---DMVLDGSDLVGRARTGQGKTLAFV 164 (574)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q-~~~i---~~il~~~dvi~~a~TGsGKTla~~ 164 (574)
|...+.+.+.++|+ ++++.+ .+++ ..+...+-++++||||||||.++-
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 45667777788888 455544 4444 334567779999999999999764
No 331
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=59.59 E-value=4.2 Score=40.52 Aligned_cols=19 Identities=37% Similarity=0.419 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
....+++.||+|+|||...
T Consensus 71 ~~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCCEEEECCCCCCHHHHH
Confidence 3568999999999999754
No 332
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.58 E-value=3.9 Score=41.71 Aligned_cols=53 Identities=13% Similarity=0.023 Sum_probs=29.3
Q ss_pred CCcccccCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHh
Q 008207 108 PNAVSRFRISVPLREKLKSKG---IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~ 163 (574)
.-.|++.+--....+.|...= +..|--++... +.-.+-+|+.||+|+|||+.+
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 345777765555555554321 11111111111 112467999999999999853
No 333
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=59.57 E-value=12 Score=39.51 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=20.2
Q ss_pred CCcEEEEccCCChhHHHhHHHHHHHHh
Q 008207 146 GSDLVGRARTGQGKTLAFVLPILESLT 172 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~lpil~~l~ 172 (574)
..++++.|.||||||.+.-..++..+.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~ 240 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILF 240 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999875544554443
No 334
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=59.47 E-value=3.1 Score=39.50 Aligned_cols=53 Identities=15% Similarity=0.011 Sum_probs=30.3
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh--cCCcEEEEccCCChhHHH
Q 008207 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVL--DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il--~~~dvi~~a~TGsGKTla 162 (574)
.+..|+++.-.+.....+...-.. .. ....+..+- -.+.+++.||+|+|||..
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 455678887777776666543110 00 011222211 123499999999999974
No 335
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.47 E-value=4 Score=41.52 Aligned_cols=53 Identities=8% Similarity=0.002 Sum_probs=29.2
Q ss_pred CCcccccCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHHh
Q 008207 108 PNAVSRFRISVPLREKLKSK---GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~ 163 (574)
.-.|++.+=-....+.|... -+..|--++...+ ...+-+++.||+|+|||+.+
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHHH
Confidence 35677776555555555432 1111111221111 12466999999999999853
No 336
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=59.35 E-value=12 Score=42.91 Aligned_cols=71 Identities=18% Similarity=0.273 Sum_probs=52.8
Q ss_pred cCCCeEEEEecChHHHHHHHHhCC------------CCccccccCCHHHHHHHHHHHhCCCccEEEEecc-ccccCC-CC
Q 008207 361 SSGGRTIIFTETKESASQLADLLP------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV-AARGLD-IN 426 (574)
Q Consensus 361 ~~~~~~lVF~~t~~~~~~l~~~l~------------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~-~~~Gld-i~ 426 (574)
..+.++||.++|+.-+..++..+. .+..+||+.+...+....+.+.+ .+|+|+|+- +..-+. +.
T Consensus 97 ~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~ 174 (1054)
T 1gku_B 97 LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELG 174 (1054)
T ss_dssp TTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSC
T ss_pred hcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhc
Confidence 456799999999998877766553 34678999999888888887777 899999962 222222 55
Q ss_pred CCcEEEE
Q 008207 427 DVQLIIQ 433 (574)
Q Consensus 427 ~v~~VI~ 433 (574)
.+++||.
T Consensus 175 ~l~~lVi 181 (1054)
T 1gku_B 175 HFDFIFV 181 (1054)
T ss_dssp CCSEEEE
T ss_pred cCCEEEE
Confidence 7888774
No 337
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=59.06 E-value=4.8 Score=38.68 Aligned_cols=17 Identities=29% Similarity=0.208 Sum_probs=14.7
Q ss_pred CcEEEEccCCChhHHHh
Q 008207 147 SDLVGRARTGQGKTLAF 163 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (574)
..+++.||+|+|||..+
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 46999999999999854
No 338
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=59.05 E-value=4.9 Score=39.11 Aligned_cols=16 Identities=25% Similarity=0.079 Sum_probs=13.7
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
-++++||||||||...
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999743
No 339
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=58.99 E-value=3.8 Score=35.53 Aligned_cols=18 Identities=22% Similarity=0.124 Sum_probs=15.2
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
|.-+++.|+.|||||...
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 556889999999999854
No 340
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=58.72 E-value=8.6 Score=41.76 Aligned_cols=75 Identities=20% Similarity=0.241 Sum_probs=43.3
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeC--------CcchHHHHHHh----c-CCCcEEEEChHHHHHhHhc
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG--------GAPYHAQEFKL----K-KGIDVVIGTPGRIKDHIER 254 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~g--------g~~~~~~~~~l----~-~~~~IlV~Tp~~l~~~l~~ 254 (574)
.++||.++++.-+..+++.+...+...++++..++| +.+...+...+ . +..+|+|+|. .+.
T Consensus 399 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~-----v~~- 472 (696)
T 2ykg_A 399 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS-----VAD- 472 (696)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE-----SSC-
T ss_pred CcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec-----hhh-
Confidence 359999999999999999998765444467777755 65544443222 2 4578999992 333
Q ss_pred CCccCCCceEEEec
Q 008207 255 GNIDLSSLKFRVLD 268 (574)
Q Consensus 255 ~~~~l~~~~~lVlD 268 (574)
.++++.++++||.-
T Consensus 473 ~GiDip~v~~VI~~ 486 (696)
T 2ykg_A 473 EGIDIAQCNLVILY 486 (696)
T ss_dssp CC---CCCSEEEEE
T ss_pred cCCcCccCCEEEEe
Confidence 35688899998853
No 341
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=58.64 E-value=4.2 Score=41.85 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.6
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
++.+++.||+|+|||..+
T Consensus 63 ~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 468999999999999754
No 342
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=58.19 E-value=6.5 Score=35.41 Aligned_cols=30 Identities=10% Similarity=-0.077 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCCChhHHHh
Q 008207 133 FPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 133 ~~~Q~~~i~~il~~~dvi~~a~TGsGKTla~ 163 (574)
++.++.. ..+..|.-+++.|++|||||...
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 4555555 33456778899999999999753
No 343
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=57.97 E-value=28 Score=30.63 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=19.5
Q ss_pred CcEEEEChHHHHHhHhcCCccCCCceEEEecCch
Q 008207 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271 (574)
Q Consensus 238 ~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEah 271 (574)
.+++-+.+..+...+..- ...++++|+|=.-
T Consensus 55 ~~~~~~~~~~l~~~l~~l---~~~yD~viiD~~~ 85 (206)
T 4dzz_A 55 FDVFTAASEKDVYGIRKD---LADYDFAIVDGAG 85 (206)
T ss_dssp SEEEECCSHHHHHTHHHH---TTTSSEEEEECCS
T ss_pred CcEEecCcHHHHHHHHHh---cCCCCEEEEECCC
Confidence 456666666776666541 2357899999543
No 344
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=57.91 E-value=3.5 Score=36.16 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
.|..+++.|+.|||||...
T Consensus 3 ~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556899999999999854
No 345
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=57.76 E-value=12 Score=34.26 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=18.9
Q ss_pred cEEEEccCCChhHHHhHHHHHHHHhC
Q 008207 148 DLVGRARTGQGKTLAFVLPILESLTN 173 (574)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil~~l~~ 173 (574)
.+++.++.|+|||...+--+......
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 58899999999998755444444443
No 346
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=57.47 E-value=42 Score=34.92 Aligned_cols=44 Identities=16% Similarity=0.082 Sum_probs=27.2
Q ss_pred CCCceEEEecCchhhhcCC-----cHHHHHHHHHhccCccCceEEEEeccC
Q 008207 259 LSSLKFRVLDEADEMLRMG-----FVEDVELILGKVEDANKVQTLLFSATL 304 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~-----~~~~~~~il~~l~~~~~~q~ll~SAT~ 304 (574)
..+.++||+| -=.-++.. ....+..++..+... ..-+++.|-..
T Consensus 369 ~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~-g~tvilvsh~~ 417 (525)
T 1tf7_A 369 DFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQE-EITGLFTNTSD 417 (525)
T ss_dssp TTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHT-TCEEEEEEECS
T ss_pred hhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhC-CCEEEEEECcc
Confidence 4567899999 55556766 666777777666542 33444444443
No 347
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=57.43 E-value=5.5 Score=39.07 Aligned_cols=16 Identities=31% Similarity=0.086 Sum_probs=13.7
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
-++++||||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5789999999999753
No 348
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=56.93 E-value=6.7 Score=35.18 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=16.1
Q ss_pred cEEEEccCCChhHHHhHHHHHH
Q 008207 148 DLVGRARTGQGKTLAFVLPILE 169 (574)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil~ 169 (574)
-.++.|+.|||||+....-++.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3689999999999865443333
No 349
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=56.91 E-value=5.6 Score=35.78 Aligned_cols=22 Identities=18% Similarity=-0.009 Sum_probs=17.1
Q ss_pred cCCcEEEEccCCChhHHHhHHH
Q 008207 145 DGSDLVGRARTGQGKTLAFVLP 166 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lp 166 (574)
.|.-+++.|++|+|||......
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l 40 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQT 40 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 4567899999999999754433
No 350
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=56.25 E-value=4.1 Score=39.39 Aligned_cols=18 Identities=28% Similarity=0.124 Sum_probs=15.5
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
...+++.|++|+|||...
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 468999999999999753
No 351
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=56.18 E-value=7.4 Score=36.34 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=17.3
Q ss_pred hcCCcEEEEccCCChhHHHh
Q 008207 144 LDGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 144 l~~~dvi~~a~TGsGKTla~ 163 (574)
+.|..+++.|++|||||...
T Consensus 46 l~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 34899999999999999853
No 352
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=56.11 E-value=2.9 Score=39.35 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=15.2
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
.+.+++.||+|+|||...
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 456999999999999854
No 353
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=55.65 E-value=6.4 Score=43.07 Aligned_cols=25 Identities=32% Similarity=0.615 Sum_probs=20.4
Q ss_pred HHHHHhcCCc--EEEEccCCChhHHHh
Q 008207 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (574)
Q Consensus 139 ~i~~il~~~d--vi~~a~TGsGKTla~ 163 (574)
.+..+++|.+ ++..|+||||||.+.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5677788887 667799999999864
No 354
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=55.64 E-value=19 Score=31.84 Aligned_cols=68 Identities=16% Similarity=0.199 Sum_probs=44.7
Q ss_pred CCCeEEEEecChHHHHHHHHhCC---------CCccccccCCHHHHHHHHHHHhCCCccEEEEecc-----cc-ccCCCC
Q 008207 362 SGGRTIIFTETKESASQLADLLP---------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV-----AA-RGLDIN 426 (574)
Q Consensus 362 ~~~~~lVF~~t~~~~~~l~~~l~---------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~-----~~-~Gldi~ 426 (574)
.+.++||.++++.-+..+++.+. .+..++|+......... + .+..+|+|+|.- +. ..+++.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 45689999999988777665542 34567788775544322 2 356799999962 12 234667
Q ss_pred CCcEEEE
Q 008207 427 DVQLIIQ 433 (574)
Q Consensus 427 ~v~~VI~ 433 (574)
++++||.
T Consensus 146 ~~~~lVi 152 (206)
T 1vec_A 146 HVQMIVL 152 (206)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7787774
No 355
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=55.44 E-value=5 Score=40.34 Aligned_cols=16 Identities=31% Similarity=0.248 Sum_probs=13.3
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
-+++.||||||||...
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 3688999999999753
No 356
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=55.14 E-value=5.2 Score=35.69 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=14.6
Q ss_pred CcEEEEccCCChhHHHh
Q 008207 147 SDLVGRARTGQGKTLAF 163 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (574)
.-+++.|+.|||||...
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999854
No 357
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=55.06 E-value=20 Score=32.41 Aligned_cols=68 Identities=12% Similarity=0.189 Sum_probs=42.1
Q ss_pred CCCeEEEEecChHHHHHHHHhCC-------CCccccccCCHHHHHHHHHHHhCCCccEEEEecc------ccccCCCCCC
Q 008207 362 SGGRTIIFTETKESASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV------AARGLDINDV 428 (574)
Q Consensus 362 ~~~~~lVF~~t~~~~~~l~~~l~-------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~------~~~Gldi~~v 428 (574)
.+.++||.++++.-+..+++.+. .+..++|+.+...+... +. ...+|+|+|.- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 56789999999998877776654 34556777665443333 22 34799999952 1235667788
Q ss_pred cEEEE
Q 008207 429 QLIIQ 433 (574)
Q Consensus 429 ~~VI~ 433 (574)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 88774
No 358
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=55.03 E-value=5.3 Score=35.13 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=13.9
Q ss_pred CcEEEEccCCChhHHHh
Q 008207 147 SDLVGRARTGQGKTLAF 163 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (574)
.-+++.|++|||||...
T Consensus 3 ~ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 34688999999999853
No 359
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=54.96 E-value=8 Score=42.04 Aligned_cols=75 Identities=17% Similarity=0.214 Sum_probs=49.3
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHh--hCCCCceEEEEeCC--------cchHHHHHHh----cCCCcEEEEChHHHHHhH
Q 008207 187 APSVLVLLPTRELAKQVHEDFDVY--GGAVGLTSCCLYGG--------APYHAQEFKL----KKGIDVVIGTPGRIKDHI 252 (574)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~--~~~~~~~~~~~~gg--------~~~~~~~~~l----~~~~~IlV~Tp~~l~~~l 252 (574)
+.++||.++++..+..+++.+... ....++.+..++|+ ++...+...+ ....+|+|||. .+
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~-----~~ 474 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT-----VA 474 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-----SC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cc
Confidence 346999999999999999988754 22236888889998 6665544333 34679999994 33
Q ss_pred hcCCccCCCceEEEe
Q 008207 253 ERGNIDLSSLKFRVL 267 (574)
Q Consensus 253 ~~~~~~l~~~~~lVl 267 (574)
. .++++.++++||.
T Consensus 475 ~-~GIDip~v~~VI~ 488 (699)
T 4gl2_A 475 E-EGLDIKECNIVIR 488 (699)
T ss_dssp C-TTSCCCSCCCCEE
T ss_pred c-cCCccccCCEEEE
Confidence 3 3568889998873
No 360
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=54.88 E-value=6 Score=34.84 Aligned_cols=20 Identities=15% Similarity=0.082 Sum_probs=16.6
Q ss_pred hcCCcEEEEccCCChhHHHh
Q 008207 144 LDGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 144 l~~~dvi~~a~TGsGKTla~ 163 (574)
..+.-+++.|++|||||...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35667999999999999853
No 361
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=54.83 E-value=8.8 Score=38.34 Aligned_cols=70 Identities=14% Similarity=0.254 Sum_probs=45.0
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHh----cCCCcEEEEChHHHHHhHhcCCccCCCce
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~ 263 (574)
.++||.++++.-+..+++.+... ++.+..++|+.+.......+ ....+|+|+|. .+. ..+++.+++
T Consensus 281 ~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~-~Gidip~v~ 350 (414)
T 3eiq_A 281 TQAVIFINTRRKVDWLTEKMHAR----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD-----LLA-RGIDVQQVS 350 (414)
T ss_dssp SSCEEECSCHHHHHHHHHHHHTT----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECS-----SCC---CCGGGCS
T ss_pred CcEEEEeCCHHHHHHHHHHHHhc----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC-----ccc-cCCCccCCC
Confidence 35899999999999998888653 57788889988765543332 34578999994 222 346777888
Q ss_pred EEEe
Q 008207 264 FRVL 267 (574)
Q Consensus 264 ~lVl 267 (574)
+||.
T Consensus 351 ~Vi~ 354 (414)
T 3eiq_A 351 LVIN 354 (414)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 8775
No 362
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.82 E-value=5.3 Score=40.46 Aligned_cols=53 Identities=15% Similarity=0.098 Sum_probs=30.2
Q ss_pred CCCcccccCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCcEEEEccCCChhHHH
Q 008207 107 HPNAVSRFRISVPLREKLKSK---GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~il~~~dvi~~a~TGsGKTla 162 (574)
..-.|++.+=-....+.|.+. -+..|--++...++ -.+-+|+.||+|+|||+.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHH
Confidence 345677776444555555432 11222223322221 246799999999999985
No 363
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=54.26 E-value=13 Score=46.67 Aligned_cols=49 Identities=18% Similarity=0.162 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHCCCCCCcHHH-HHHH---HHHhcCCcEEEEccCCChhHHHhHH
Q 008207 116 ISVPLREKLKSKGIESLFPIQ-AMTF---DMVLDGSDLVGRARTGQGKTLAFVL 165 (574)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q-~~~i---~~il~~~dvi~~a~TGsGKTla~~l 165 (574)
+...+.+.+.+.|+. +++.+ .+++ ..+..++.+++.||||||||.++-.
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 445566777788874 55554 3333 4455678899999999999997643
No 364
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=53.96 E-value=5.3 Score=35.63 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCChhHHHh
Q 008207 144 LDGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 144 l~~~dvi~~a~TGsGKTla~ 163 (574)
..|.-+.+.|+.|||||...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35677889999999999753
No 365
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=53.93 E-value=3.8 Score=40.16 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
....+++.||+|+|||...
T Consensus 44 ~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GGCCEEEECCGGGCTTHHH
T ss_pred CCceEEEECCCCccHHHHH
Confidence 3457999999999999753
No 366
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=53.62 E-value=5.6 Score=34.95 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=14.9
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
+.-+++.|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 446889999999999854
No 367
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=53.53 E-value=15 Score=33.36 Aligned_cols=67 Identities=21% Similarity=0.246 Sum_probs=45.7
Q ss_pred CCCeEEEEecChHHHHHHHHhCC---------CCccccccCCHHHHHHHHHHHhCCCccEEEEeccc------cccCCCC
Q 008207 362 SGGRTIIFTETKESASQLADLLP---------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA------ARGLDIN 426 (574)
Q Consensus 362 ~~~~~lVF~~t~~~~~~l~~~l~---------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~------~~Gldi~ 426 (574)
.+.++||.+++++-+..+++.+. .+..++|+.....+...+ ...+|+|+|.-. ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 45689999999988877666543 345678888766654433 357999999631 2345667
Q ss_pred CCcEEEE
Q 008207 427 DVQLIIQ 433 (574)
Q Consensus 427 ~v~~VI~ 433 (574)
++++||.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 7777764
No 368
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=53.37 E-value=6.1 Score=33.52 Aligned_cols=15 Identities=20% Similarity=0.122 Sum_probs=12.9
Q ss_pred cEEEEccCCChhHHH
Q 008207 148 DLVGRARTGQGKTLA 162 (574)
Q Consensus 148 dvi~~a~TGsGKTla 162 (574)
-.++.||+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 467899999999985
No 369
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=53.27 E-value=5.8 Score=35.25 Aligned_cols=19 Identities=26% Similarity=0.216 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
.+.-+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4567899999999999854
No 370
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=52.94 E-value=6.3 Score=33.84 Aligned_cols=18 Identities=28% Similarity=0.167 Sum_probs=15.3
Q ss_pred CcEEEEccCCChhHHHhH
Q 008207 147 SDLVGRARTGQGKTLAFV 164 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~~ 164 (574)
+++++.|..|||||.+.-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 579999999999998543
No 371
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=52.92 E-value=5.5 Score=38.06 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=14.3
Q ss_pred CcEEEEccCCChhHHHh
Q 008207 147 SDLVGRARTGQGKTLAF 163 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (574)
.-++++|++|||||...
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999853
No 372
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=52.84 E-value=5.4 Score=35.87 Aligned_cols=18 Identities=17% Similarity=0.154 Sum_probs=14.7
Q ss_pred cCCcEEEEccCCChhHHH
Q 008207 145 DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla 162 (574)
.|.-+.+.|++|||||..
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 355678999999999974
No 373
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=52.56 E-value=6.1 Score=34.67 Aligned_cols=18 Identities=17% Similarity=0.043 Sum_probs=14.8
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
+.-+++.|++|||||...
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345889999999999854
No 374
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=52.48 E-value=6.9 Score=34.52 Aligned_cols=19 Identities=16% Similarity=0.066 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
.+.-+++.|++|||||...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567899999999999853
No 375
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=52.43 E-value=5.9 Score=37.54 Aligned_cols=51 Identities=22% Similarity=0.259 Sum_probs=25.4
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHH-HHHHHH--hcCCcEEEEccCCChhHHH
Q 008207 109 NAVSRFRISVPLREKLKSKGIESLFPIQA-MTFDMV--LDGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~-~~i~~i--l~~~dvi~~a~TGsGKTla 162 (574)
..|++.+--..+.+.|...- ..|+.. ..+..+ .-.+.+++.||+|+|||+.
T Consensus 7 ~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -----CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 45667765566666665431 122211 122221 1123499999999999984
No 376
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=52.13 E-value=6.1 Score=36.16 Aligned_cols=20 Identities=35% Similarity=0.240 Sum_probs=12.5
Q ss_pred hcCCcEEEEccCCChhHHHh
Q 008207 144 LDGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 144 l~~~dvi~~a~TGsGKTla~ 163 (574)
..|.-+.+.||+|||||...
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp ECCCEEEEECSCC----CHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35777889999999999753
No 377
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=52.03 E-value=6 Score=36.53 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCChhHH
Q 008207 145 DGSDLVGRARTGQGKTL 161 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTl 161 (574)
.|.-+.+.||+|||||+
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 57778899999999997
No 378
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=51.96 E-value=8 Score=37.78 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=14.9
Q ss_pred CcEEEEccCCChhHHHh
Q 008207 147 SDLVGRARTGQGKTLAF 163 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (574)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 67999999999999853
No 379
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=51.76 E-value=6.3 Score=40.33 Aligned_cols=54 Identities=20% Similarity=0.090 Sum_probs=30.3
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHH-HH-HHHhcCCcEEEEccCCChhHHHh
Q 008207 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAM-TF-DMVLDGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~-~i-~~il~~~dvi~~a~TGsGKTla~ 163 (574)
.+..|+++.-.....+.|...-. .|.+.. .+ ......+.+++.||+|+|||+..
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 34567777666666666654310 011000 00 01123467999999999999854
No 380
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=51.58 E-value=8.9 Score=39.52 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=19.2
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~ 172 (574)
...++++.||+|+|||...- .+...+.
T Consensus 200 ~~~~~LL~G~pG~GKT~la~-~la~~l~ 226 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAE-GLAQQII 226 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHH-HHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHH-HHHHHHH
Confidence 45689999999999998543 3344443
No 381
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=51.56 E-value=43 Score=36.35 Aligned_cols=74 Identities=18% Similarity=0.273 Sum_probs=52.6
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCC--------------------------------CCceEEEEeCCcchHHHHHHh--
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGA--------------------------------VGLTSCCLYGGAPYHAQEFKL-- 234 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~--------------------------------~~~~~~~~~gg~~~~~~~~~l-- 234 (574)
++||.+|++.-+..++..+...... ....+..++|+.+...+....
T Consensus 254 ~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~ 333 (715)
T 2va8_A 254 QVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEG 333 (715)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHH
Confidence 4999999999999999888764321 013478899998876554333
Q ss_pred --cCCCcEEEEChHHHHHhHhcCCccCCCceEEEec
Q 008207 235 --KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268 (574)
Q Consensus 235 --~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlD 268 (574)
.+...|+|||. .+.. ++++..+.+||-+
T Consensus 334 f~~g~~~vlvaT~-----~l~~-Gidip~~~~VI~~ 363 (715)
T 2va8_A 334 FRQRKIKVIVATP-----TLAA-GVNLPARTVIIGD 363 (715)
T ss_dssp HHTTCSCEEEECG-----GGGG-SSCCCBSEEEECC
T ss_pred HHcCCCeEEEECh-----HHhc-ccCCCceEEEEeC
Confidence 35689999993 3333 5688888887644
No 382
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=51.49 E-value=6.7 Score=35.73 Aligned_cols=18 Identities=22% Similarity=0.015 Sum_probs=15.2
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
+.-+++.|++|||||...
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999853
No 383
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=51.47 E-value=6.2 Score=39.23 Aligned_cols=16 Identities=31% Similarity=0.354 Sum_probs=13.8
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
-.++.||||||||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5778999999999865
No 384
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=51.43 E-value=6.5 Score=35.41 Aligned_cols=17 Identities=24% Similarity=0.200 Sum_probs=14.0
Q ss_pred cEEEEccCCChhHHHhH
Q 008207 148 DLVGRARTGQGKTLAFV 164 (574)
Q Consensus 148 dvi~~a~TGsGKTla~~ 164 (574)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999998643
No 385
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=51.32 E-value=6.2 Score=35.76 Aligned_cols=20 Identities=20% Similarity=-0.042 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCChhHHHhH
Q 008207 145 DGSDLVGRARTGQGKTLAFV 164 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~ 164 (574)
.|.-+.+.||+|||||....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 56678999999999997543
No 386
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=51.31 E-value=11 Score=39.15 Aligned_cols=28 Identities=11% Similarity=-0.038 Sum_probs=19.9
Q ss_pred hcCCcEEEEccCCChhHHHhHHHHHHHH
Q 008207 144 LDGSDLVGRARTGQGKTLAFVLPILESL 171 (574)
Q Consensus 144 l~~~dvi~~a~TGsGKTla~~lpil~~l 171 (574)
..|.-+++.|++|+|||...+-.+.+..
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a 267 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWG 267 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHH
Confidence 3566799999999999975544444433
No 387
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=50.84 E-value=6.2 Score=35.41 Aligned_cols=19 Identities=21% Similarity=-0.036 Sum_probs=14.8
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
.|.-+.+.|++|||||...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 3445778999999999843
No 388
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=50.64 E-value=7.4 Score=33.67 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=13.9
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
.+++.|+.|||||...
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5889999999999853
No 389
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=50.58 E-value=22 Score=32.74 Aligned_cols=67 Identities=16% Similarity=0.116 Sum_probs=45.6
Q ss_pred CCeEEEEecChHHHHHHHHhCC--------CCccccccCCHHHHHHHHHHHhCCCccEEEEecc-c-----cccCCCCCC
Q 008207 363 GGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV-A-----ARGLDINDV 428 (574)
Q Consensus 363 ~~~~lVF~~t~~~~~~l~~~l~--------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~-~-----~~Gldi~~v 428 (574)
+.++||.+++++-+..+.+.+. .+..++|+.+...+...+ ....+|+|+|.- + ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 4689999999998887766553 345577877655443332 346799999953 2 124577888
Q ss_pred cEEEE
Q 008207 429 QLIIQ 433 (574)
Q Consensus 429 ~~VI~ 433 (574)
++||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88774
No 390
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=50.45 E-value=6.6 Score=34.17 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
.|.-+++.|+.|||||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3566889999999999853
No 391
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=50.35 E-value=6.7 Score=34.34 Aligned_cols=16 Identities=19% Similarity=0.144 Sum_probs=13.5
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
-+++.|+.|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999853
No 392
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=50.25 E-value=10 Score=33.65 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=26.6
Q ss_pred CCCceEEEecCchhh--hcCCcHHHHHHHHHhccCccCceEEEEeccCc
Q 008207 259 LSSLKFRVLDEADEM--LRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (574)
Q Consensus 259 l~~~~~lVlDEah~~--l~~~~~~~~~~il~~l~~~~~~q~ll~SAT~~ 305 (574)
+.+.+++|+||+..| .+..|...+..++..- ..+++-++|.+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~-----~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP-----GTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS-----SCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC-----CcEEEEEeecC
Confidence 566789999998887 3444666666666421 12444466653
No 393
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=50.20 E-value=7.5 Score=41.47 Aligned_cols=15 Identities=13% Similarity=0.178 Sum_probs=13.9
Q ss_pred cEEEEccCCChhHHH
Q 008207 148 DLVGRARTGQGKTLA 162 (574)
Q Consensus 148 dvi~~a~TGsGKTla 162 (574)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999974
No 394
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=49.89 E-value=7.1 Score=35.17 Aligned_cols=17 Identities=29% Similarity=0.167 Sum_probs=14.0
Q ss_pred cEEEEccCCChhHHHhH
Q 008207 148 DLVGRARTGQGKTLAFV 164 (574)
Q Consensus 148 dvi~~a~TGsGKTla~~ 164 (574)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999998643
No 395
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=49.81 E-value=7.9 Score=35.01 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=15.1
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
+..+++.|++|||||...
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999854
No 396
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=49.73 E-value=7 Score=34.20 Aligned_cols=16 Identities=19% Similarity=0.133 Sum_probs=13.8
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
-+++.|++|||||...
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 397
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=49.71 E-value=15 Score=37.62 Aligned_cols=68 Identities=10% Similarity=0.009 Sum_probs=45.6
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEEE
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lV 266 (574)
.++||.+|++.-+..+++.+... ++.+..++|...............+|+|||. .+.+ .+++.. ++||
T Consensus 191 ~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT~-----v~~~-GiDip~-~~VI 258 (459)
T 2z83_A 191 GKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYDTEYPKCKNGDWDFVITTD-----ISEM-GANFGA-SRVI 258 (459)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCCCCGGGSSSCCCSEEEESS-----CC----CCCSC-SEEE
T ss_pred CCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHHHHHhhccCCCceEEEECC-----hHHh-CeecCC-CEEE
Confidence 46999999999999999998765 5778888886432222222235689999993 3333 456777 6655
No 398
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=49.67 E-value=9.5 Score=33.16 Aligned_cols=15 Identities=20% Similarity=0.058 Sum_probs=13.1
Q ss_pred cEEEEccCCChhHHH
Q 008207 148 DLVGRARTGQGKTLA 162 (574)
Q Consensus 148 dvi~~a~TGsGKTla 162 (574)
-.++.|++|||||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 568899999999984
No 399
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=49.63 E-value=8.3 Score=33.60 Aligned_cols=17 Identities=24% Similarity=0.118 Sum_probs=14.3
Q ss_pred CcEEEEccCCChhHHHh
Q 008207 147 SDLVGRARTGQGKTLAF 163 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (574)
..+++.|++|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35889999999999854
No 400
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=49.62 E-value=27 Score=32.42 Aligned_cols=68 Identities=22% Similarity=0.293 Sum_probs=45.8
Q ss_pred CCCeEEEEecChHHHHHHHHhCC--------CCccccccCCHHHHHHHHHHHhCCCccEEEEec-----ccc--ccCCCC
Q 008207 362 SGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN-----VAA--RGLDIN 426 (574)
Q Consensus 362 ~~~~~lVF~~t~~~~~~l~~~l~--------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd-----~~~--~Gldi~ 426 (574)
.+.++||.++++.-+...+..+. .+..++|+.....+... +..+ .+|+|+|. .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 46789999999998877766554 34556777765544333 3334 89999994 122 246778
Q ss_pred CCcEEEE
Q 008207 427 DVQLIIQ 433 (574)
Q Consensus 427 ~v~~VI~ 433 (574)
++.+||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 8888774
No 401
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=49.61 E-value=13 Score=36.05 Aligned_cols=15 Identities=27% Similarity=0.118 Sum_probs=13.0
Q ss_pred cEEEEccCCChhHHH
Q 008207 148 DLVGRARTGQGKTLA 162 (574)
Q Consensus 148 dvi~~a~TGsGKTla 162 (574)
-+++.|+.|||||..
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 368899999999984
No 402
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=49.55 E-value=19 Score=34.57 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=14.9
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
+.-+.+.||+|+|||...
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 566888999999999853
No 403
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=49.49 E-value=7.4 Score=33.42 Aligned_cols=17 Identities=18% Similarity=0.044 Sum_probs=14.3
Q ss_pred CcEEEEccCCChhHHHh
Q 008207 147 SDLVGRARTGQGKTLAF 163 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (574)
+-+++.|+.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35889999999999853
No 404
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=49.42 E-value=9.8 Score=33.33 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=12.9
Q ss_pred cEEEEccCCChhHHH
Q 008207 148 DLVGRARTGQGKTLA 162 (574)
Q Consensus 148 dvi~~a~TGsGKTla 162 (574)
.+.+.||+|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999984
No 405
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=49.27 E-value=11 Score=37.11 Aligned_cols=23 Identities=13% Similarity=-0.179 Sum_probs=17.3
Q ss_pred CCcEEEEccCCChhHHHhHHHHH
Q 008207 146 GSDLVGRARTGQGKTLAFVLPIL 168 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~~lpil 168 (574)
|.-+++.|++|+|||...+..+.
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999975444343
No 406
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=48.94 E-value=17 Score=34.86 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
.|.-+.+.|++|+|||...
T Consensus 99 ~g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp SCEEEEEECCTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4667889999999999854
No 407
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=48.88 E-value=9.2 Score=36.88 Aligned_cols=19 Identities=16% Similarity=0.078 Sum_probs=16.4
Q ss_pred hcCCcEEEEccCCChhHHH
Q 008207 144 LDGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 144 l~~~dvi~~a~TGsGKTla 162 (574)
-.|.-+.+.||+|||||..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TTCSEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3678899999999999974
No 408
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=48.80 E-value=22 Score=38.28 Aligned_cols=67 Identities=15% Similarity=0.224 Sum_probs=49.8
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHhcCCCcEEEEChHHHHHhHhcCCccCCCceEE
Q 008207 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (574)
Q Consensus 186 ~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~l 265 (574)
...++||.+||+.-+.++++.+... ++.+..++|+.+... ....+.+|+|+|. .+.+| +++. +++|
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~e---r~~~~~~VLVATd-----VaerG-IDId-V~~V 460 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSV---IPTIGDVVVVATD-----ALMTG-YTGD-FDSV 460 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGG---SCSSSCEEEEECT-----THHHH-CCCC-BSEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHH---HHhCCCcEEEECC-----hHHcc-CCCC-CcEE
Confidence 3457999999999999999888753 588999999987653 2345679999994 34443 4564 7776
Q ss_pred E
Q 008207 266 V 266 (574)
Q Consensus 266 V 266 (574)
|
T Consensus 461 I 461 (666)
T 3o8b_A 461 I 461 (666)
T ss_dssp E
T ss_pred E
Confidence 6
No 409
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=48.64 E-value=7.3 Score=36.00 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCChhHHH
Q 008207 145 DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla 162 (574)
.|.-+.+.||+|||||..
T Consensus 30 ~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577889999999999973
No 410
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=48.57 E-value=5.1 Score=35.91 Aligned_cols=21 Identities=19% Similarity=-0.135 Sum_probs=16.3
Q ss_pred HhcCCcEEEEccCCChhHHHh
Q 008207 143 VLDGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 143 il~~~dvi~~a~TGsGKTla~ 163 (574)
+..+.-+.+.|++|||||...
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 334566889999999999843
No 411
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=48.50 E-value=7.6 Score=35.18 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=14.3
Q ss_pred CcEEEEccCCChhHHHh
Q 008207 147 SDLVGRARTGQGKTLAF 163 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (574)
..+.+.|++|||||...
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999854
No 412
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=48.40 E-value=7.4 Score=34.09 Aligned_cols=19 Identities=26% Similarity=0.179 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
.+.-+++.|+.|||||...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3556889999999999854
No 413
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=48.33 E-value=11 Score=40.15 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=19.0
Q ss_pred HHHhcCCcEEEEccCCChhHHHh
Q 008207 141 DMVLDGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 141 ~~il~~~dvi~~a~TGsGKTla~ 163 (574)
..+..|..+++.||+|+|||..+
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHH
Confidence 34557889999999999999853
No 414
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=48.32 E-value=8.6 Score=34.81 Aligned_cols=18 Identities=11% Similarity=0.051 Sum_probs=15.1
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
...+++.|++|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356899999999999854
No 415
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=48.02 E-value=18 Score=35.02 Aligned_cols=19 Identities=21% Similarity=0.165 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
.++-+.+.+++|+|||...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSL 122 (320)
T ss_dssp SCEEEEEESSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556888999999999754
No 416
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=47.96 E-value=18 Score=33.80 Aligned_cols=53 Identities=8% Similarity=-0.004 Sum_probs=32.0
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhh
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~ 211 (574)
.|..+++.+.+|+|||+..+..+.+.+.++. ++++++- .|-..++...++.++
T Consensus 20 ~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge-------------~~~~~~~-~e~~~~l~~~~~~~G 72 (260)
T 3bs4_A 20 HSLILIHEEDASSRGKDILFYILSRKLKSDN-------------LVGMFSI-SYPLQLIIRILSRFG 72 (260)
T ss_dssp TCEEEEEECSGGGCHHHHHHHHHHHHHHTTC-------------EEEEEEC-SSCHHHHHHHHHHTT
T ss_pred CCcEEEEEeCCCccHHHHHHHHHHHHHHCCC-------------cEEEEEE-eCCHHHHHHHHHHcC
Confidence 3466888878888887433444455555443 3677654 355666666666654
No 417
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=47.63 E-value=8.1 Score=34.32 Aligned_cols=16 Identities=19% Similarity=0.146 Sum_probs=13.8
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
-+++.|+.|||||...
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999854
No 418
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=47.49 E-value=8.1 Score=35.09 Aligned_cols=32 Identities=16% Similarity=0.068 Sum_probs=20.8
Q ss_pred CCCceEEEecCchhhhcCCcHHHHHHHHHhcc
Q 008207 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290 (574)
Q Consensus 259 l~~~~~lVlDEah~~l~~~~~~~~~~il~~l~ 290 (574)
+.+-+++++||.-.-+|......+..++..+.
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~ 180 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 180 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHH
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence 44566777777777777666666666665553
No 419
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=47.49 E-value=32 Score=34.96 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=15.5
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
.+++++.||+|+|||...
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999853
No 420
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=47.26 E-value=7.3 Score=34.64 Aligned_cols=18 Identities=17% Similarity=0.093 Sum_probs=14.9
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
+.-+++.|++|||||...
T Consensus 20 ~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345889999999999853
No 421
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=47.21 E-value=8 Score=34.38 Aligned_cols=16 Identities=19% Similarity=0.144 Sum_probs=13.5
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
.+.+.|++|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999853
No 422
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=47.08 E-value=8.9 Score=35.09 Aligned_cols=19 Identities=26% Similarity=0.219 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
.+..+++.|++|||||...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4467999999999999854
No 423
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=46.76 E-value=7.8 Score=38.53 Aligned_cols=15 Identities=20% Similarity=0.175 Sum_probs=13.1
Q ss_pred cEEEEccCCChhHHH
Q 008207 148 DLVGRARTGQGKTLA 162 (574)
Q Consensus 148 dvi~~a~TGsGKTla 162 (574)
=.++.|+||+|||..
T Consensus 27 l~vi~G~NGaGKT~i 41 (371)
T 3auy_A 27 IVAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478899999999985
No 424
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=46.75 E-value=8.6 Score=32.83 Aligned_cols=16 Identities=13% Similarity=-0.114 Sum_probs=13.5
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3789999999999853
No 425
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=46.75 E-value=21 Score=32.01 Aligned_cols=67 Identities=16% Similarity=0.232 Sum_probs=39.6
Q ss_pred CCCeEEEEecChHHHHHHHHhCC--------CCccccccCCHHHHHHHHHHHhCCCccEEEEeccc------cccCCCCC
Q 008207 362 SGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA------ARGLDIND 427 (574)
Q Consensus 362 ~~~~~lVF~~t~~~~~~l~~~l~--------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaTd~~------~~Gldi~~ 427 (574)
.+.++||.++++.-+..+++.+. .+..++|+.+...+... +. ..+|+|+|.-. ...+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 45689999999998877766543 34567777665443332 22 37999999532 24566777
Q ss_pred CcEEEE
Q 008207 428 VQLIIQ 433 (574)
Q Consensus 428 v~~VI~ 433 (574)
+++||.
T Consensus 156 ~~~iVi 161 (224)
T 1qde_A 156 IKMFIL 161 (224)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 888774
No 426
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=46.69 E-value=8.5 Score=34.32 Aligned_cols=16 Identities=25% Similarity=0.079 Sum_probs=13.3
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
-+.+.|+.|||||...
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999854
No 427
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=46.61 E-value=11 Score=36.51 Aligned_cols=25 Identities=20% Similarity=0.040 Sum_probs=18.3
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHH
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILE 169 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~ 169 (574)
.|.-+++.|++|+|||...+-.+.+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999754444433
No 428
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=46.42 E-value=7.2 Score=33.99 Aligned_cols=16 Identities=25% Similarity=0.119 Sum_probs=13.1
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
-+.+.|++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999754
No 429
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=46.35 E-value=8.2 Score=34.40 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
.+.-+++.|+.|||||...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 3556889999999999853
No 430
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=46.18 E-value=2.1e+02 Score=27.71 Aligned_cols=17 Identities=24% Similarity=0.173 Sum_probs=14.2
Q ss_pred cEEEEccCCChhHHHhH
Q 008207 148 DLVGRARTGQGKTLAFV 164 (574)
Q Consensus 148 dvi~~a~TGsGKTla~~ 164 (574)
.++++|++|+|||..+.
T Consensus 81 ~I~i~G~~G~GKSTl~~ 97 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIE 97 (355)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999997543
No 431
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=46.11 E-value=9.4 Score=34.06 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
.+.-+++.|+.|||||...
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4667899999999999854
No 432
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=46.09 E-value=8.8 Score=33.95 Aligned_cols=16 Identities=19% Similarity=0.185 Sum_probs=13.4
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
.+++.|++|||||...
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3788999999999853
No 433
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=46.05 E-value=13 Score=38.34 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=26.2
Q ss_pred CCceEEEecCchhhhcCCcHHHHHHHHHhccCccCceEEEE
Q 008207 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300 (574)
Q Consensus 260 ~~~~~lVlDEah~~l~~~~~~~~~~il~~l~~~~~~q~ll~ 300 (574)
..+++||+|||++| |..+...+..++..+ ..|.|+.
T Consensus 413 ~~~rlvvlDEA~km-D~~~~~~~~~l~~~l----glQliia 448 (483)
T 3euj_A 413 LPCRLLFLDQAARL-DAMSINTLFELCERL----DMQLLIA 448 (483)
T ss_dssp CCCCEEEESSGGGS-CHHHHHHHHHHHHHT----TCEEEEE
T ss_pred CceeEEEEeccccC-CHHHHHHHHHHHHHc----CCEEEEE
Confidence 58999999999776 555566666666666 5788754
No 434
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=45.94 E-value=8.7 Score=35.95 Aligned_cols=17 Identities=18% Similarity=0.087 Sum_probs=14.3
Q ss_pred CcEEEEccCCChhHHHh
Q 008207 147 SDLVGRARTGQGKTLAF 163 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (574)
.-++++|++|||||...
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 45889999999999854
No 435
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=45.89 E-value=11 Score=33.84 Aligned_cols=16 Identities=31% Similarity=0.196 Sum_probs=13.4
Q ss_pred EEEEccCCChhHHHhH
Q 008207 149 LVGRARTGQGKTLAFV 164 (574)
Q Consensus 149 vi~~a~TGsGKTla~~ 164 (574)
+++.||+||||++...
T Consensus 3 Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6888999999998543
No 436
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=45.88 E-value=7.8 Score=33.67 Aligned_cols=18 Identities=22% Similarity=0.080 Sum_probs=11.2
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
+.-+++.|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999854
No 437
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=45.75 E-value=8.5 Score=35.33 Aligned_cols=18 Identities=39% Similarity=0.388 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCChhHHH
Q 008207 145 DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla 162 (574)
.|.-+.+.||.|||||..
T Consensus 33 ~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577888999999999983
No 438
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=45.68 E-value=8.6 Score=39.68 Aligned_cols=17 Identities=29% Similarity=0.345 Sum_probs=14.8
Q ss_pred CcEEEEccCCChhHHHh
Q 008207 147 SDLVGRARTGQGKTLAF 163 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (574)
+.+++.||+|+|||+..
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999853
No 439
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=45.66 E-value=8.2 Score=36.60 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCChhHHH
Q 008207 145 DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla 162 (574)
.|.-+.+.||+|||||+.
T Consensus 33 ~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577788999999999983
No 440
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=45.64 E-value=8.9 Score=35.43 Aligned_cols=18 Identities=22% Similarity=0.038 Sum_probs=15.2
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
+.-+++.|+.|||||+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 467899999999999853
No 441
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=45.51 E-value=8.7 Score=36.07 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCChhHHH
Q 008207 145 DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla 162 (574)
.|.-+.+.||+|||||..
T Consensus 45 ~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 677899999999999983
No 442
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=45.48 E-value=8.6 Score=35.79 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCChhHHH
Q 008207 145 DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla 162 (574)
.|.-+.+.||.|||||..
T Consensus 34 ~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577888999999999983
No 443
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=45.26 E-value=8.1 Score=33.14 Aligned_cols=19 Identities=21% Similarity=0.092 Sum_probs=15.5
Q ss_pred hcCCcEEEEccCCChhHHH
Q 008207 144 LDGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 144 l~~~dvi~~a~TGsGKTla 162 (574)
..|.-+.+.||.|+|||..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3566688999999999973
No 444
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=45.22 E-value=10 Score=33.92 Aligned_cols=19 Identities=21% Similarity=0.176 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
.+.-+++.|+.|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4667999999999999854
No 445
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=44.98 E-value=24 Score=40.13 Aligned_cols=55 Identities=20% Similarity=0.229 Sum_probs=36.4
Q ss_pred CcccccC-C-CHHHHHHHHHCCCCC--C--cHHHHHHHHHHh---cCCcEEEEccCCChhHHHh
Q 008207 109 NAVSRFR-I-SVPLREKLKSKGIES--L--FPIQAMTFDMVL---DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 109 ~~~~~~~-l-~~~l~~~l~~~g~~~--~--~~~Q~~~i~~il---~~~dvi~~a~TGsGKTla~ 163 (574)
++|..++ + ++..++......... | +.+-..|+..++ .++.+|+.|.+|||||.+.
T Consensus 98 NPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 98 NPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp CCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred CCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHH
Confidence 5566664 3 677777776543332 3 334455665555 4567999999999999874
No 446
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=44.88 E-value=9.4 Score=40.21 Aligned_cols=19 Identities=32% Similarity=0.251 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
.|..+++.||+|+|||..+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778999999999999753
No 447
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=44.82 E-value=9.5 Score=33.38 Aligned_cols=15 Identities=27% Similarity=0.257 Sum_probs=13.0
Q ss_pred EEEEccCCChhHHHh
Q 008207 149 LVGRARTGQGKTLAF 163 (574)
Q Consensus 149 vi~~a~TGsGKTla~ 163 (574)
+++.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999854
No 448
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=44.58 E-value=9.3 Score=34.37 Aligned_cols=16 Identities=13% Similarity=0.011 Sum_probs=13.6
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
.+++.|++|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999854
No 449
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=44.28 E-value=9.9 Score=33.41 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=13.4
Q ss_pred EEEEccCCChhHHHhH
Q 008207 149 LVGRARTGQGKTLAFV 164 (574)
Q Consensus 149 vi~~a~TGsGKTla~~ 164 (574)
+++.|+.|||||...-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999998643
No 450
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=44.25 E-value=11 Score=34.19 Aligned_cols=20 Identities=15% Similarity=0.111 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCChhHHHhH
Q 008207 145 DGSDLVGRARTGQGKTLAFV 164 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~ 164 (574)
..+-+++.||+||||++..-
T Consensus 28 k~kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34567889999999988543
No 451
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=44.15 E-value=8.9 Score=35.04 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCChhHHH
Q 008207 145 DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla 162 (574)
.|.-+.+.||.|||||..
T Consensus 29 ~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp TTCEEEEEECTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999973
No 452
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=44.08 E-value=29 Score=33.45 Aligned_cols=110 Identities=15% Similarity=0.207 Sum_probs=50.4
Q ss_pred EEEEc---cCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCC-eEEEEeCcHH---HHHHHHHHHHHhhCCC-CceEEE
Q 008207 149 LVGRA---RTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP-SVLVLLPTRE---LAKQVHEDFDVYGGAV-GLTSCC 220 (574)
Q Consensus 149 vi~~a---~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~-~~Lil~Ptre---La~Qv~~~~~~~~~~~-~~~~~~ 220 (574)
+|++| -=|||||=. .+.+.+.+.. ....--..|+++.. ..+++.+... -+.++-++--.+.... +..+
T Consensus 38 VI~VGNitvGGTGKTP~-vi~L~~~L~~-~~~~ilsRGYg~~~~~~~~v~~~~~~~~~~~~~GDEp~lla~~~~~~~v-- 113 (315)
T 4ehx_A 38 VISVGNLSVGGSGKTSF-VMYLADLLKD-KRVCILSRGYKRKSKGTLIVSEYGNLKVSWEEAGDEPYLMAKLLPHVSV-- 113 (315)
T ss_dssp EEEEEESBSSCCSHHHH-HHHHHHHTTT-SCEEEEECCCSCSSCSEEEEEETTEECSCHHHHCHHHHHHHHHCTTSEE--
T ss_pred EEEECCEEeCCCChHHH-HHHHHHHHhh-cCceEEeecccccccCceEEeecccccCCcccccCHHHHHHHhCCCceE--
Confidence 56665 468999964 4555555532 21111111222221 2334444322 3556666644443322 2322
Q ss_pred EeCCcchHHHHHH-hcCCCcEEEEChHHHHHhHhcCCccCCCceEEEec
Q 008207 221 LYGGAPYHAQEFK-LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268 (574)
Q Consensus 221 ~~gg~~~~~~~~~-l~~~~~IlV~Tp~~l~~~l~~~~~~l~~~~~lVlD 268 (574)
+++.......... ...+++|+|.-.| +++..+ -.+++++++|
T Consensus 114 ~v~~~R~~~~~~~~~~~~~dviIlDDG-----fQh~~l-~rDl~Ivv~d 156 (315)
T 4ehx_A 114 VASEDRYKGGLLALEKLSPEVFILDDG-----FQHRKL-HRDLNILLLK 156 (315)
T ss_dssp EEESSHHHHHHHHHHHHCCSEEEEETC-----TTCTTB-CCSEEEEEEE
T ss_pred EEecchHHHHHHHhhccCCcEEEecCc-----cccccc-cccceEEEee
Confidence 2222222222222 2346888887432 232222 4678899998
No 453
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=44.03 E-value=9.4 Score=48.01 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=18.0
Q ss_pred HhcCCcEEEEccCCChhHHHh
Q 008207 143 VLDGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 143 il~~~dvi~~a~TGsGKTla~ 163 (574)
+..++.++++||||+|||...
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 447899999999999999753
No 454
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=43.88 E-value=22 Score=35.05 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
.|.-+.+.|++|+|||+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEEcCCCChHHHHH
Confidence 3556889999999999854
No 455
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=43.88 E-value=9.4 Score=35.31 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCChhHHH
Q 008207 145 DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla 162 (574)
.|.-+.+.||.|||||..
T Consensus 31 ~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577788999999999983
No 456
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=43.88 E-value=8.9 Score=37.01 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCChhHHH
Q 008207 145 DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla 162 (574)
.|.-+.+.||+|||||..
T Consensus 79 ~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp TTCEEEEESSSCHHHHHH
T ss_pred CCCEEEEECCCCchHHHH
Confidence 578899999999999983
No 457
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=43.79 E-value=9.2 Score=36.03 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCChhHHH
Q 008207 145 DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla 162 (574)
.|.-+.+.||+|||||+.
T Consensus 36 ~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp TTCEEEEECCTTSCHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 577788999999999983
No 458
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=43.75 E-value=11 Score=34.08 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=14.9
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
+..+++.|++|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 356899999999999853
No 459
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=43.59 E-value=11 Score=35.07 Aligned_cols=19 Identities=16% Similarity=0.113 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
.|.-+.+.|++|||||...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567889999999999853
No 460
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=43.54 E-value=9.5 Score=35.70 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCChhHHH
Q 008207 145 DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla 162 (574)
.|.-+.+.||.|||||+.
T Consensus 32 ~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577788999999999983
No 461
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=43.25 E-value=12 Score=34.62 Aligned_cols=19 Identities=16% Similarity=0.114 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
....+++.|+.|||||...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456999999999999854
No 462
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=43.22 E-value=9.9 Score=35.72 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCChhHHH
Q 008207 145 DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla 162 (574)
.|.-+.+.||.|||||+.
T Consensus 31 ~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999983
No 463
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=43.17 E-value=9.9 Score=35.84 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCChhHHH
Q 008207 145 DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla 162 (574)
.|.-+.+.||.|||||..
T Consensus 45 ~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577788999999999984
No 464
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=43.17 E-value=8.4 Score=35.71 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCChhHHH
Q 008207 145 DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla 162 (574)
.|.-+.+.||+|||||..
T Consensus 27 ~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp TTEEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999983
No 465
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=42.94 E-value=10 Score=34.40 Aligned_cols=16 Identities=19% Similarity=0.169 Sum_probs=13.5
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999854
No 466
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=42.83 E-value=14 Score=40.71 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=18.9
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHH
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESL 171 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l 171 (574)
...++++.||+|+|||...- .+...+
T Consensus 200 ~~~~vLL~G~pGtGKT~la~-~la~~l 225 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAE-GLAQQI 225 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHH-HHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHH-HHHHHH
Confidence 35689999999999998543 334444
No 467
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=42.82 E-value=9.9 Score=35.39 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCChhHHH
Q 008207 145 DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla 162 (574)
.|.-+.+.||.|||||+.
T Consensus 28 ~Ge~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTL 45 (250)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577788999999999984
No 468
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=42.56 E-value=41 Score=34.91 Aligned_cols=74 Identities=19% Similarity=0.160 Sum_probs=33.8
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCCCCceEEE--------EeCCcchHHHHHH---hc--CCCcEEEEChHHHHHhHhcC
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC--------LYGGAPYHAQEFK---LK--KGIDVVIGTPGRIKDHIERG 255 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~--------~~gg~~~~~~~~~---l~--~~~~IlV~Tp~~l~~~l~~~ 255 (574)
++||.++++..+..+++.+.......++++.. ++|+++...+... +. ...+|+|||. .+. .
T Consensus 392 k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~~~-~ 465 (556)
T 4a2p_A 392 RTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VAD-E 465 (556)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC----------
T ss_pred eEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcC-----chh-c
Confidence 59999999999999999886542222333333 3445544333322 22 3578999993 222 3
Q ss_pred CccCCCceEEEec
Q 008207 256 NIDLSSLKFRVLD 268 (574)
Q Consensus 256 ~~~l~~~~~lVlD 268 (574)
++++.++++||.=
T Consensus 466 GiDip~v~~VI~~ 478 (556)
T 4a2p_A 466 GIDIVQCNLVVLY 478 (556)
T ss_dssp -------CEEEEE
T ss_pred CCCchhCCEEEEe
Confidence 5688889988853
No 469
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=42.33 E-value=11 Score=33.76 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=13.3
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
-.++.|++|+|||..+
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4678899999999853
No 470
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=42.25 E-value=11 Score=33.40 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=13.6
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
-+.+.|++|||||...
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 471
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=42.19 E-value=10 Score=35.41 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCChhHHH
Q 008207 145 DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla 162 (574)
.|.-+.+.||.|||||+.
T Consensus 40 ~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 577788999999999983
No 472
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=42.08 E-value=11 Score=33.61 Aligned_cols=18 Identities=22% Similarity=-0.064 Sum_probs=14.4
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
+.-+.+.|++|||||...
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345788999999999853
No 473
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=42.03 E-value=10 Score=35.27 Aligned_cols=18 Identities=28% Similarity=0.254 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCChhHHH
Q 008207 145 DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla 162 (574)
.|.-+.+.||.|||||..
T Consensus 25 ~Ge~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTL 42 (249)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 577788999999999983
No 474
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=42.01 E-value=11 Score=36.48 Aligned_cols=24 Identities=13% Similarity=0.009 Sum_probs=17.8
Q ss_pred hcCCcEEEEccCCChhHHHhHHHH
Q 008207 144 LDGSDLVGRARTGQGKTLAFVLPI 167 (574)
Q Consensus 144 l~~~dvi~~a~TGsGKTla~~lpi 167 (574)
..|.-+++.||+|+|||......+
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA 144 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALG 144 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHH
Confidence 345668999999999997544433
No 475
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=41.99 E-value=11 Score=35.59 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCChhHHH
Q 008207 145 DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla 162 (574)
.|.-+.+.||.|||||..
T Consensus 32 ~Ge~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTL 49 (266)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 577788999999999983
No 476
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=41.91 E-value=49 Score=36.45 Aligned_cols=74 Identities=19% Similarity=0.137 Sum_probs=36.3
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCCCCc--------eEEEEeCCcchHHHHHH---hc--CCCcEEEEChHHHHHhHhcC
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGAVGL--------TSCCLYGGAPYHAQEFK---LK--KGIDVVIGTPGRIKDHIERG 255 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~--------~~~~~~gg~~~~~~~~~---l~--~~~~IlV~Tp~~l~~~l~~~ 255 (574)
++||.|+++..+..+++.+.......++ ....++|+++...+... +. ...+|+|||. .+. .
T Consensus 633 kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~-----~~~-~ 706 (797)
T 4a2q_A 633 RTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VAD-E 706 (797)
T ss_dssp CEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEEC-----C----
T ss_pred eEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcC-----chh-c
Confidence 5999999999999999998764222223 33334455554433322 22 4578999993 222 3
Q ss_pred CccCCCceEEEec
Q 008207 256 NIDLSSLKFRVLD 268 (574)
Q Consensus 256 ~~~l~~~~~lVlD 268 (574)
++++..+++||.=
T Consensus 707 GIDlp~v~~VI~y 719 (797)
T 4a2q_A 707 GIDIVQCNLVVLY 719 (797)
T ss_dssp ----CCCSEEEEE
T ss_pred CCCchhCCEEEEe
Confidence 5688899998863
No 477
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=41.80 E-value=2.3e+02 Score=27.93 Aligned_cols=92 Identities=10% Similarity=0.020 Sum_probs=54.5
Q ss_pred HHHHHHhcCCcEEEEccCCC-hhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCc
Q 008207 138 MTFDMVLDGSDLVGRARTGQ-GKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGL 216 (574)
Q Consensus 138 ~~i~~il~~~dvi~~a~TGs-GKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~ 216 (574)
..+...+.++.++|.|.||. |..++-. +..... .+++++.-...-..++..++.......+.
T Consensus 27 ~~~~~~~~~k~vLVTGatG~IG~~l~~~------L~~~g~-----------~~V~~~~r~~~~~~~~~~~l~~~~~~~~~ 89 (399)
T 3nzo_A 27 KELQSVVSQSRFLVLGGAGSIGQAVTKE------IFKRNP-----------QKLHVVDISENNMVELVRDIRSSFGYING 89 (399)
T ss_dssp HHHHHHHHTCEEEEETTTSHHHHHHHHH------HHTTCC-----------SEEEEECSCHHHHHHHHHHHHHHTCCCSS
T ss_pred HHHHHHhCCCEEEEEcCChHHHHHHHHH------HHHCCC-----------CEEEEEECCcchHHHHHHHHHHhcCCCCC
Confidence 44556678999999999985 7765433 322210 13566665555555666666554443445
Q ss_pred eEEEEeCCcchHHHHHHh--cCCCcEEEEChH
Q 008207 217 TSCCLYGGAPYHAQEFKL--KKGIDVVIGTPG 246 (574)
Q Consensus 217 ~~~~~~gg~~~~~~~~~l--~~~~~IlV~Tp~ 246 (574)
.+..+.++.......... ..++|+||-..+
T Consensus 90 ~v~~~~~Dl~d~~~~~~~~~~~~~D~Vih~Aa 121 (399)
T 3nzo_A 90 DFQTFALDIGSIEYDAFIKADGQYDYVLNLSA 121 (399)
T ss_dssp EEEEECCCTTSHHHHHHHHHCCCCSEEEECCC
T ss_pred cEEEEEEeCCCHHHHHHHHHhCCCCEEEECCC
Confidence 677777776554433333 256888886543
No 478
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=41.66 E-value=11 Score=35.67 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCChhHHH
Q 008207 145 DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla 162 (574)
.|.-+.+.||.|||||..
T Consensus 44 ~Ge~~~i~G~nGsGKSTL 61 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTV 61 (271)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577888999999999983
No 479
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=41.65 E-value=8 Score=36.02 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=14.7
Q ss_pred CCcEEEEccCCChhHHHh
Q 008207 146 GSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 146 ~~dvi~~a~TGsGKTla~ 163 (574)
+.-+++.|++|||||...
T Consensus 32 ~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp CEEEEEESCGGGTTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345899999999999853
No 480
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=41.58 E-value=10 Score=35.34 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCChhHHH
Q 008207 145 DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla 162 (574)
.|.-+.+.||.|||||..
T Consensus 30 ~Ge~~~l~G~nGsGKSTL 47 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTL 47 (253)
T ss_dssp TTCEEEEECCSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999983
No 481
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=41.41 E-value=61 Score=36.52 Aligned_cols=78 Identities=18% Similarity=0.131 Sum_probs=40.8
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEE--------EEeCCcchHHHHHH---h-c-CCCcEEEEChHHHHHhHh
Q 008207 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC--------CLYGGAPYHAQEFK---L-K-KGIDVVIGTPGRIKDHIE 253 (574)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~--------~~~gg~~~~~~~~~---l-~-~~~~IlV~Tp~~l~~~l~ 253 (574)
+.++||.++++..+..+.+.+.......++++. .++|+++...+... + . ...+|+|+|. .+.
T Consensus 631 ~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~-----~~~ 705 (936)
T 4a2w_A 631 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VAD 705 (936)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEEC-----C--
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeC-----chh
Confidence 346999999999999999999875322233333 33455554433322 2 2 4578999993 333
Q ss_pred cCCccCCCceEEEecCc
Q 008207 254 RGNIDLSSLKFRVLDEA 270 (574)
Q Consensus 254 ~~~~~l~~~~~lVlDEa 270 (574)
.++++..+++||.=..
T Consensus 706 -eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 706 -EGIDIVQCNLVVLYEY 721 (936)
T ss_dssp -----CCCCSEEEEESC
T ss_pred -cCCcchhCCEEEEeCC
Confidence 3568999999886433
No 482
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=40.80 E-value=12 Score=33.73 Aligned_cols=17 Identities=18% Similarity=0.102 Sum_probs=14.0
Q ss_pred CcEEEEccCCChhHHHh
Q 008207 147 SDLVGRARTGQGKTLAF 163 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (574)
.-+.+.|+.|||||...
T Consensus 5 ~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35789999999999854
No 483
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=40.79 E-value=11 Score=35.34 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCChhHHH
Q 008207 145 DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla 162 (574)
.|.-+.+.||.|||||+.
T Consensus 49 ~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEEcCCCCcHHHH
Confidence 567788999999999983
No 484
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=40.70 E-value=5.8 Score=40.90 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=0.0
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHHh----cCCCcEEEEChHHHHHhHhcCCccCCCc
Q 008207 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSL 262 (574)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~~l~~~l~~~~~~l~~~ 262 (574)
..++||.||++.-+..+++.+... ++.+..++|+.+.......+ ....+|+|||. .+.+ ++++.++
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-----~~~~-GlDip~v 402 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCAR-GIDVEQV 402 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-----cccc-CCccccC
Confidence 457999999999999888888654 46778888887665443322 24578999993 3333 4678888
Q ss_pred eEEE
Q 008207 263 KFRV 266 (574)
Q Consensus 263 ~~lV 266 (574)
.+||
T Consensus 403 ~~VI 406 (479)
T 3fmp_B 403 SVVI 406 (479)
T ss_dssp ----
T ss_pred CEEE
Confidence 8876
No 485
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=40.53 E-value=11 Score=35.73 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCChhHHH
Q 008207 145 DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla 162 (574)
.|.-+.+.||.|||||+.
T Consensus 46 ~Ge~~~liG~NGsGKSTL 63 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTL 63 (279)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 577788999999999983
No 486
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=40.23 E-value=34 Score=41.00 Aligned_cols=30 Identities=20% Similarity=0.101 Sum_probs=22.9
Q ss_pred cCCcEEEEccCCChhHHHhHHHHHHHHhCC
Q 008207 145 DGSDLVGRARTGQGKTLAFVLPILESLTNG 174 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~~lpil~~l~~~ 174 (574)
.|..+++.|++|||||...+..+.+.+..+
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~~G 62 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQREG 62 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhCC
Confidence 467899999999999986655556655543
No 487
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=39.45 E-value=91 Score=32.73 Aligned_cols=77 Identities=9% Similarity=0.090 Sum_probs=49.3
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHhhC----CCCceEEEEeCCcchHH--HHHHhcC-CCc---EEEEChHHHHHhHhcCCc
Q 008207 188 PSVLVLLPTRELAKQVHEDFDVYGG----AVGLTSCCLYGGAPYHA--QEFKLKK-GID---VVIGTPGRIKDHIERGNI 257 (574)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~----~~~~~~~~~~gg~~~~~--~~~~l~~-~~~---IlV~Tp~~l~~~l~~~~~ 257 (574)
.++||.|+++.-|..+++.+...+. ..+-.+..++|..+... ....+.+ ..+ |+|+| +.+. .++
T Consensus 440 ~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt-----~~l~-~Gi 513 (590)
T 3h1t_A 440 AKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTS-----QLLT-TGV 513 (590)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEES-----STTT-TTC
T ss_pred ccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEEC-----Chhh-cCc
Confidence 4699999999999999999876542 12334666777765411 1223333 222 66666 2223 357
Q ss_pred cCCCceEEEecCc
Q 008207 258 DLSSLKFRVLDEA 270 (574)
Q Consensus 258 ~l~~~~~lVlDEa 270 (574)
++..+.+||++..
T Consensus 514 Dip~v~~Vi~~~~ 526 (590)
T 3h1t_A 514 DAPTCKNVVLARV 526 (590)
T ss_dssp CCTTEEEEEEESC
T ss_pred cchheeEEEEEec
Confidence 8999999998654
No 488
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=38.84 E-value=13 Score=35.50 Aligned_cols=16 Identities=19% Similarity=0.220 Sum_probs=13.1
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
-+.+.|++|||||...
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999753
No 489
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=38.67 E-value=32 Score=34.83 Aligned_cols=21 Identities=19% Similarity=0.041 Sum_probs=15.4
Q ss_pred CcEEEEccCCChhHHHhHHHH
Q 008207 147 SDLVGRARTGQGKTLAFVLPI 167 (574)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpi 167 (574)
+.+++++++|+|||....--+
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 357788999999998644333
No 490
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=38.66 E-value=14 Score=32.84 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=13.7
Q ss_pred cEEEEccCCChhHHHhH
Q 008207 148 DLVGRARTGQGKTLAFV 164 (574)
Q Consensus 148 dvi~~a~TGsGKTla~~ 164 (574)
-+.+.|.+|||||.+.-
T Consensus 14 iIgltG~~GSGKSTva~ 30 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCE 30 (192)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36788999999998643
No 491
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=38.51 E-value=23 Score=36.98 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=20.4
Q ss_pred hcCCcEEEEccCCChhHHHhHHHHHHHH
Q 008207 144 LDGSDLVGRARTGQGKTLAFVLPILESL 171 (574)
Q Consensus 144 l~~~dvi~~a~TGsGKTla~~lpil~~l 171 (574)
..|.-+++.|++|||||+...+.++.-+
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl 64 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGI 64 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3578899999999999986554333333
No 492
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=38.10 E-value=45 Score=36.61 Aligned_cols=55 Identities=20% Similarity=0.244 Sum_probs=34.5
Q ss_pred Cccccc-CC-CHHHHHHHHHCCCC--CC--cHHHHHHHHHHh---cCCcEEEEccCCChhHHHh
Q 008207 109 NAVSRF-RI-SVPLREKLKSKGIE--SL--FPIQAMTFDMVL---DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 109 ~~~~~~-~l-~~~l~~~l~~~g~~--~~--~~~Q~~~i~~il---~~~dvi~~a~TGsGKTla~ 163 (574)
++|..+ ++ ++..+......... .| +.+=..|+..++ .++.+|+.|..|+|||.+.
T Consensus 94 NPyk~l~~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 94 NPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp CCSSCCTTTTSHHHHHHHTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred cCCcCcCCCCCHHHHHHHhCCCcccCCchHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehH
Confidence 455555 33 56666665544332 23 344456665554 3567999999999999764
No 493
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=38.09 E-value=19 Score=31.30 Aligned_cols=15 Identities=20% Similarity=-0.064 Sum_probs=12.7
Q ss_pred cEEEEccCCChhHHH
Q 008207 148 DLVGRARTGQGKTLA 162 (574)
Q Consensus 148 dvi~~a~TGsGKTla 162 (574)
-+.+.|+.|||||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467889999999974
No 494
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=37.83 E-value=14 Score=35.25 Aligned_cols=16 Identities=19% Similarity=0.140 Sum_probs=13.7
Q ss_pred cEEEEccCCChhHHHh
Q 008207 148 DLVGRARTGQGKTLAF 163 (574)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (574)
-+++.|++|||||...
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 495
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=37.80 E-value=13 Score=34.38 Aligned_cols=19 Identities=16% Similarity=-0.010 Sum_probs=14.9
Q ss_pred cCCcEEEEccCCChhHHHh
Q 008207 145 DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla~ 163 (574)
.|.-+-+.||.|||||+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp CSEEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3445778999999999854
No 496
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=37.70 E-value=1.8e+02 Score=26.95 Aligned_cols=95 Identities=13% Similarity=0.175 Sum_probs=57.6
Q ss_pred cCCChhHHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHH
Q 008207 154 RTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233 (574)
Q Consensus 154 ~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 233 (574)
...+||..+ +.-++..+.... -++||.+.++..+..+...+... .++.+..+.|+++.......
T Consensus 92 ~~~s~K~~~-L~~ll~~~~~~~------------~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~~~ 155 (271)
T 1z5z_A 92 VRRSGKMIR-TMEIIEEALDEG------------DKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDDI 155 (271)
T ss_dssp STTCHHHHH-HHHHHHHHHHTT------------CCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHHHH
T ss_pred cccCHHHHH-HHHHHHHHHhCC------------CeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHHHH
Confidence 346888765 444454443211 24999999999999888888653 13667778898876544332
Q ss_pred h---cC--CCc-EEEEChHHHHHhHhcCCccCCCceEEEecCc
Q 008207 234 L---KK--GID-VVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270 (574)
Q Consensus 234 l---~~--~~~-IlV~Tp~~l~~~l~~~~~~l~~~~~lVlDEa 270 (574)
+ .. .+. ++++| ... ...+++...++||+=+.
T Consensus 156 i~~F~~~~~~~v~L~st-~~~-----g~Glnl~~a~~VI~~d~ 192 (271)
T 1z5z_A 156 ISKFQNNPSVKFIVLSV-KAG-----GFGINLTSANRVIHFDR 192 (271)
T ss_dssp HHHHHHCTTCCEEEEEC-CTT-----CCCCCCTTCSEEEECSC
T ss_pred HHHhcCCCCCCEEEEeh-hhh-----cCCcCcccCCEEEEECC
Confidence 2 22 355 45554 222 23567777777765433
No 497
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=37.69 E-value=88 Score=35.36 Aligned_cols=74 Identities=12% Similarity=0.115 Sum_probs=54.4
Q ss_pred eEEEEeCcHHHHHHHHHHHHHhhCCCCceEEEEeCCcchHHHHHH---hcCC---CcEEEEChHHHHHhHhcCCccCCCc
Q 008207 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK---LKKG---IDVVIGTPGRIKDHIERGNIDLSSL 262 (574)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~~---~~IlV~Tp~~l~~~l~~~~~~l~~~ 262 (574)
++||.|+++.-+..+...+... .++.+..++|+++....... +..+ ++|+|+| .. +. .++++..+
T Consensus 505 k~iVF~~~~~~~~~l~~~L~~~---~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT-~v----~~-~GlDl~~~ 575 (968)
T 3dmq_A 505 KVLVICAKAATALQLEQVLRER---EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS-EI----GS-EGRNFQFA 575 (968)
T ss_dssp CCCEECSSTHHHHHHHHHHHTT---TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS-CC----TT-CSSCCTTC
T ss_pred CEEEEeCcHHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec-ch----hh-cCCCcccC
Confidence 4899999999998888877632 36889999999876544332 3333 8999999 22 22 35789999
Q ss_pred eEEEecCch
Q 008207 263 KFRVLDEAD 271 (574)
Q Consensus 263 ~~lVlDEah 271 (574)
.+||+-..+
T Consensus 576 ~~VI~~d~p 584 (968)
T 3dmq_A 576 SHMVMFDLP 584 (968)
T ss_dssp CEEECSSCC
T ss_pred cEEEEecCC
Confidence 999987665
No 498
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=37.60 E-value=13 Score=35.47 Aligned_cols=18 Identities=39% Similarity=0.388 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCChhHHH
Q 008207 145 DGSDLVGRARTGQGKTLA 162 (574)
Q Consensus 145 ~~~dvi~~a~TGsGKTla 162 (574)
.|.-+.+.||.|||||..
T Consensus 63 ~Ge~~~i~G~NGsGKSTL 80 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSL 80 (290)
T ss_dssp TTCEEEEEESTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 577788999999999984
No 499
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=37.58 E-value=39 Score=38.30 Aligned_cols=55 Identities=20% Similarity=0.316 Sum_probs=34.1
Q ss_pred CcccccCC-CHHHHHHHHHCCCCC--Cc--HHHHHHHHHHh---cCCcEEEEccCCChhHHHh
Q 008207 109 NAVSRFRI-SVPLREKLKSKGIES--LF--PIQAMTFDMVL---DGSDLVGRARTGQGKTLAF 163 (574)
Q Consensus 109 ~~~~~~~l-~~~l~~~l~~~g~~~--~~--~~Q~~~i~~il---~~~dvi~~a~TGsGKTla~ 163 (574)
++|..+++ ++..+.......... |. .+=..++..++ .++.+|+.|..|+|||.+.
T Consensus 127 NPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 127 NPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp CCSSCCSCCSHHHHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHHH
T ss_pred cCCccccCCCHHHHHHhcCCCccCCCccHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchHH
Confidence 45555553 566666665443332 32 34445665554 4566999999999999864
No 500
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=37.57 E-value=57 Score=29.68 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=21.4
Q ss_pred ChHHHHHhHhcCCccCCCceEEEecCch
Q 008207 244 TPGRIKDHIERGNIDLSSLKFRVLDEAD 271 (574)
Q Consensus 244 Tp~~l~~~l~~~~~~l~~~~~lVlDEah 271 (574)
||..+.+.|.+..++++++.++-+||--
T Consensus 44 tp~~~y~~L~~~~idw~~v~~f~~DEr~ 71 (226)
T 3lwd_A 44 TPKPFFTSLAAKALPWARVDVTLADERW 71 (226)
T ss_dssp TTHHHHHHHHTSCSCGGGEEEEESEEES
T ss_pred CHHHHHHHHHhcCCCchhEEEEEeeecc
Confidence 4555666666677889999999999943
Done!