Citrus Sinensis ID: 008207

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570----
MPSIALFDGKEVKDEKKMNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVVSAFLFSSSSNSLSLTSGTMCFFRLTSEFCIF
ccccccccccccccHHHHHHHcccccHHHHHHHHccccccHHHHccccccccccccccHHHHHccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHcccccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHccccEEEcccHHHHHHHcccccccccccEEEcccHHHHHccccHHHHHHHHHccccccccEEEEEcccccHHHHHHHHHHcccccEEEEEEEcccccccccEEEEEEEccccccHHHHccccEECcccccEEEEEcccHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccEEEEccccccccccccccEEEccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHccccCCcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccccCEEEEEEccEEcc
****************************************************************************************************************RFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNG********GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVVS*********SL*****TMCFFRLTSEFCIF
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MPSIALFDGKEVKDEKKMNKKMALKDFEETEAALTEKSSDKKKxxxxxxxxxxxxxxxxxxxxxxxxxxxxGEPVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVVSAFLFSSSSNSLSLTSGTMCFFRLTSEFCIF

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
DEAD-box ATP-dependent RNA helicase 7 probableQ39189
DEAD-box ATP-dependent RNA helicase 7 probableQ650T9
DEAD-box ATP-dependent RNA helicase 7 probableQ41382

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
3.-.-.-Hydrolases.probable
3.6.-.-Acting on acid anhydrides.probable
3.6.4.-Acting on acid anhydrides; involved in cellular and subcellular movement.probable
3.6.4.13RNA helicase.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1WP9, chain A
Confidence level:very confident
Coverage over the Query: 131-174,187-466
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Template: 2GXQ, chain A
Confidence level:very confident
Coverage over the Query: 110-324
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Template: 3SQW, chain A
Confidence level:very confident
Coverage over the Query: 107-488
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Template: 3I32, chain A
Confidence level:very confident
Coverage over the Query: 336-563
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Template: 3LVG, chain D
Confidence level:probable
Coverage over the Query: 28-91
View the alignment between query and template
View the model in PyMOL
Template: 3LVG, chain D
Confidence level:probable
Coverage over the Query: 28-91
View the alignment between query and template
View the model in PyMOL