Query 008208
Match_columns 574
No_of_seqs 200 out of 647
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 20:52:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008208.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008208hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1362 Choline transporter-li 100.0 1.2E-63 2.7E-68 548.7 36.9 365 185-554 140-559 (577)
2 PF04515 Choline_transpo: Plas 100.0 1.8E-58 3.9E-63 483.8 26.7 288 253-540 3-329 (334)
3 KOG1924 RhoA GTPase effector D 96.1 0.0077 1.7E-07 68.6 5.3 21 550-570 1046-1066(1102)
4 KOG1924 RhoA GTPase effector D 95.8 0.013 2.8E-07 66.9 5.7 21 272-292 795-815 (1102)
5 PRK15319 AIDA autotransporter- 90.1 0.34 7.3E-06 60.7 4.8 10 351-360 1843-1852(2039)
6 PHA03247 large tegument protei 84.8 1.6 3.4E-05 56.6 6.2 19 270-288 3121-3139(3151)
7 KOG4672 Uncharacterized conser 83.7 3.7 8E-05 44.5 7.6 15 92-106 325-339 (487)
8 KOG0162 Myosin class I heavy c 83.1 2.3 5E-05 49.1 6.1 17 94-110 991-1007(1106)
9 PF12238 MSA-2c: Merozoite sur 81.9 2.9 6.3E-05 41.5 5.7 17 99-115 157-173 (205)
10 KOG3895 Synaptic vesicle prote 77.3 6 0.00013 42.3 6.6 48 73-120 403-450 (488)
11 KOG1923 Rac1 GTPase effector F 76.6 4.7 0.0001 46.9 6.0 8 84-91 277-284 (830)
12 KOG1923 Rac1 GTPase effector F 75.6 6.2 0.00014 45.9 6.6 16 84-99 273-288 (830)
13 COG5178 PRP8 U5 snRNP spliceos 74.5 2.5 5.5E-05 50.8 3.2 8 212-219 123-130 (2365)
14 PRK09752 adhesin; Provisional 74.1 3.4 7.3E-05 50.4 4.2 11 351-361 1062-1072(1250)
15 PRK15313 autotransport protein 71.9 4.4 9.6E-05 48.3 4.5 11 350-360 754-764 (955)
16 KOG1785 Tyrosine kinase negati 66.4 16 0.00035 39.6 6.9 20 51-70 445-464 (563)
17 KOG3671 Actin regulatory prote 66.3 9.8 0.00021 42.4 5.3 6 27-32 266-271 (569)
18 PF11081 DUF2890: Protein of u 62.5 18 0.00038 35.6 5.8 13 141-153 121-133 (187)
19 KOG4425 Uncharacterized conser 62.5 5.8 0.00013 43.8 2.7 15 97-111 83-97 (900)
20 PRK09752 adhesin; Provisional 62.4 8.3 0.00018 47.2 4.2 10 61-70 897-906 (1250)
21 PRK14948 DNA polymerase III su 61.8 17 0.00037 42.1 6.6 16 75-90 504-519 (620)
22 PRK15313 autotransport protein 60.8 13 0.00028 44.6 5.4 7 151-157 640-646 (955)
23 KOG4672 Uncharacterized conser 60.1 30 0.00064 37.8 7.4 7 63-69 290-296 (487)
24 KOG0559 Dihydrolipoamide succi 60.1 22 0.00048 38.3 6.4 16 38-53 124-139 (457)
25 COG5178 PRP8 U5 snRNP spliceos 57.5 8 0.00017 46.9 2.9 13 212-224 112-124 (2365)
26 PHA03356 tegument protein UL11 55.3 23 0.00051 30.1 4.5 7 76-82 51-57 (93)
27 PF01690 PLRV_ORF5: Potato lea 54.2 11 0.00023 41.9 3.0 10 134-143 31-40 (465)
28 KOG4849 mRNA cleavage factor I 52.1 49 0.0011 35.5 7.3 14 64-77 217-230 (498)
29 COG5373 Predicted membrane pro 48.4 29 0.00064 41.0 5.5 6 312-317 300-305 (931)
30 PTZ00438 gamete antigen 27/25- 47.3 9 0.0002 39.4 1.1 29 9-42 102-130 (374)
31 PRK06863 single-stranded DNA-b 46.9 27 0.00059 33.8 4.3 31 94-124 125-155 (168)
32 PF06570 DUF1129: Protein of u 46.5 3E+02 0.0065 27.1 11.9 17 57-74 40-56 (206)
33 KOG2391 Vacuolar sorting prote 46.3 30 0.00064 37.0 4.7 24 43-66 101-125 (365)
34 PF12238 MSA-2c: Merozoite sur 45.1 49 0.0011 33.0 5.8 29 25-53 81-110 (205)
35 KOG1925 Rac1 GTPase effector F 41.9 25 0.00055 39.3 3.5 26 87-112 227-254 (817)
36 KOG4090 Uncharacterized conser 41.2 54 0.0012 31.2 5.1 14 97-110 15-28 (157)
37 PRK03427 cell division protein 40.5 88 0.0019 33.5 7.2 22 37-58 61-82 (333)
38 PRK13335 superantigen-like pro 39.1 71 0.0015 34.1 6.1 6 42-47 85-90 (356)
39 KOG1922 Rho GTPase effector BN 38.9 88 0.0019 37.5 7.9 14 442-455 716-729 (833)
40 PF10110 GPDPase_memb: Membran 38.7 78 0.0017 29.5 6.0 32 432-463 104-135 (149)
41 KOG1129 TPR repeat-containing 38.1 30 0.00065 37.1 3.3 25 269-293 264-288 (478)
42 PRK10649 hypothetical protein; 36.7 1.6E+02 0.0034 34.0 9.1 21 204-224 49-69 (577)
43 PF07462 MSP1_C: Merozoite sur 36.5 67 0.0014 36.4 5.8 10 66-75 252-261 (574)
44 KOG3397 Acetyltransferases [Ge 36.4 46 0.001 32.5 4.0 10 66-75 154-163 (225)
45 KOG3622 Uncharacterized conser 36.3 73 0.0016 38.8 6.2 11 87-97 84-94 (1572)
46 PF06637 PV-1: PV-1 protein (P 34.8 25 0.00054 38.1 2.1 24 96-120 392-415 (442)
47 PF10873 DUF2668: Protein of u 34.4 88 0.0019 29.6 5.3 22 110-131 130-151 (155)
48 PF05750 Rubella_Capsid: Rubel 32.4 58 0.0013 31.9 4.0 10 94-103 80-89 (300)
49 KOG2928 Origin recognition com 32.2 48 0.001 37.0 3.7 80 4-86 18-99 (518)
50 KOG1830 Wiskott Aldrich syndro 31.3 1.2E+02 0.0027 33.4 6.6 28 16-43 182-217 (518)
51 KOG2927 Membrane component of 31.3 72 0.0016 34.4 4.8 62 195-266 187-250 (372)
52 KOG2418 Microtubule-associated 30.8 1.3E+02 0.0028 32.6 6.5 13 68-80 198-211 (448)
53 KOG4849 mRNA cleavage factor I 30.4 74 0.0016 34.2 4.6 10 71-80 242-251 (498)
54 PLN02983 biotin carboxyl carri 30.2 1.1E+02 0.0023 32.0 5.7 11 43-53 114-124 (274)
55 PF05297 Herpes_LMP1: Herpesvi 29.4 18 0.00039 37.8 0.0 20 197-216 54-73 (381)
56 PF14017 DUF4233: Protein of u 29.3 4.2E+02 0.0091 23.7 10.3 26 251-277 78-103 (107)
57 KOG4307 RNA binding protein RB 27.6 1.9E+02 0.0042 33.9 7.6 56 27-82 123-181 (944)
58 PRK13855 type IV secretion sys 27.6 1E+02 0.0022 33.6 5.2 20 72-91 58-77 (376)
59 PHA03211 serine/threonine kina 27.1 64 0.0014 35.9 3.8 7 146-152 66-72 (461)
60 KOG3895 Synaptic vesicle prote 26.4 1E+02 0.0022 33.4 4.8 7 70-76 391-397 (488)
61 COG0342 SecD Preprotein transl 26.1 1.1E+02 0.0024 34.8 5.4 48 2-50 149-196 (506)
62 PHA03378 EBNA-3B; Provisional 25.6 1.1E+02 0.0024 35.8 5.2 14 52-65 668-681 (991)
63 PF15359 CDV3: Carnitine defic 25.6 1.3E+02 0.0028 28.0 4.8 17 94-110 82-98 (129)
64 PF06459 RR_TM4-6: Ryanodine R 25.6 1.2E+02 0.0027 31.6 5.3 17 138-154 164-180 (274)
65 PF03154 Atrophin-1: Atrophin- 25.2 2E+02 0.0043 35.0 7.4 102 17-129 115-223 (982)
66 PRK00442 tatA twin arginine tr 24.9 1.1E+02 0.0024 26.7 4.0 7 113-119 73-79 (92)
67 KOG2236 Uncharacterized conser 24.9 2.1E+02 0.0045 32.1 7.0 10 94-103 412-421 (483)
68 KOG0917 Uncharacterized conser 24.7 1.6E+02 0.0035 30.8 5.7 6 189-194 325-330 (338)
69 TIGR01129 secD protein-export 24.0 9.8E+02 0.021 26.2 12.5 18 196-213 249-266 (397)
70 PRK08763 single-stranded DNA-b 23.7 80 0.0017 30.4 3.3 18 32-49 69-86 (164)
71 COG3115 ZipA Cell division pro 22.9 2.4E+02 0.0053 29.8 6.7 6 69-74 89-94 (324)
72 PF12273 RCR: Chitin synthesis 22.7 75 0.0016 29.0 2.8 6 270-275 23-28 (130)
73 KOG3828 Uncharacterized conser 22.6 6.5E+02 0.014 27.6 9.9 9 382-390 287-295 (457)
74 PHA03211 serine/threonine kina 22.4 1.1E+02 0.0023 34.2 4.4 11 529-539 434-444 (461)
75 KOG4451 Uncharacterized conser 22.4 19 0.00042 36.3 -1.2 19 19-37 134-152 (286)
76 KOG0639 Transducin-like enhanc 21.5 4.2E+02 0.0091 30.2 8.5 19 65-83 249-267 (705)
77 KOG0132 RNA polymerase II C-te 20.9 1.4E+02 0.0029 35.5 4.8 49 73-135 621-669 (894)
78 PRK13855 type IV secretion sys 20.8 2E+02 0.0044 31.4 5.9 15 378-392 280-294 (376)
79 PRK14849 putative lipoprotein/ 20.8 60 0.0013 41.9 2.2 9 352-360 1602-1610(1806)
80 KOG0917 Uncharacterized conser 20.6 1.8E+02 0.004 30.4 5.2 10 123-132 269-278 (338)
81 KOG1925 Rac1 GTPase effector F 20.4 77 0.0017 35.7 2.7 11 372-382 512-522 (817)
82 PF05399 EVI2A: Ectropic viral 20.3 4.2E+02 0.009 26.8 7.4 18 135-152 119-136 (227)
No 1
>KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.2e-63 Score=548.70 Aligned_cols=365 Identities=23% Similarity=0.443 Sum_probs=295.6
Q ss_pred hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH--HHHhcc-------CCc------
Q 008208 185 KEKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGIL--LICFQK-------PAT------ 249 (574)
Q Consensus 185 ~~~~dl~~~~~~i~~~~~ls~vls~iwl~lLr~~~~~~i~~~vw~~iil~~~~~i~--~~~~~~-------~~~------ 249 (574)
+...|+..+|++++..++++++++++|+.++|.+++. ++|+.+++.+...++ ..|+.. +..
T Consensus 140 ~i~~~i~~sw~~i~~~~~~~l~~s~i~~~~lr~~~~~----l~~~~~~~~l~~l~~~~~~~~~~y~~~~~~~~~i~~~~~ 215 (577)
T KOG1362|consen 140 RIFADILRSWYTILSLLGIALVLSLIFTKLLRFLAAI----LPWILIILVLVGLLSGIWFCWFLYAILRNTKVTIGFTSS 215 (577)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhccccceeecchH
Confidence 3678899999999999999999999999999966664 467766666544333 122111 100
Q ss_pred ------------chHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHhhhhcCcchhhHHHHHHHHHHHHHHHHHHHH
Q 008208 250 ------------DGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVI 317 (574)
Q Consensus 250 ------------~~~~i~~ii~ai~~~ly~~~~r~RI~~aiaiLk~As~~i~~~p~l~~~~~~~~ii~~~~~~~W~~~~i 317 (574)
+..+++..++.++.++|++++|+||+++++++|+|+|++.+.|+++++|++++++.++|+++|+...+
T Consensus 216 ~~~~~~~~~~~l~~~~Iv~~v~~vv~~l~~i~lr~RI~~a~all~ea~k~i~~~p~~~~~p~~~~~v~~~~i~~wv~~~~ 295 (577)
T KOG1362|consen 216 LFVAVGNQLTLLDAVGIVLTVISVVLVLYIIFLRKRIPLAIALLKEATKAIGSLPSTLFPPALTFFVLLLFISLWVFVAL 295 (577)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13678888888888788889999999999999999999999999999999999999999999999876
Q ss_pred hc--cc--------ccCch----HHHHHHHHH-HHHHHHHHhcccccceeeeeeEeeecCCC-----ccHHHHHHHHHhh
Q 008208 318 GA--LN--------FYFPP----LIIIALVLS-LAWTTEVMRNVVNLTVCRVISLYYILGMQ-----SSTQFCFQRALTQ 377 (574)
Q Consensus 318 G~--~~--------~~~~~----~~~~~~lfs-~~Wt~~vi~~v~~~tvAg~va~WYF~~~~-----~pv~~Sf~ra~ty 377 (574)
+- .+ ..+++ .+++++++. ++|+++|+.|++|+++||++++|||++++ .|+..||+|+++|
T Consensus 296 ~l~t~~~~~~gg~~~~~~~~~~~~~~~~~vv~~l~Wt~~fi~a~q~~vISgava~~Yf~~~~~~iP~~p~~~al~ra~~y 375 (577)
T KOG1362|consen 296 FLVTSGPNSEGGCACTYSGGSLRILFWLLVVGSLIWTSEFILALQQVVISGAVASWYFARDKQDIPSSPLFSALRRALRY 375 (577)
T ss_pred HHhhcccccCCCceeeccCCcchhHhHHHHHHHHHHHHHHHHHHHHHhhhhhhheeeEecCCCCCCCchHHHHHHHHHHH
Confidence 22 12 22322 356666666 99999999999999999999999997542 6899999999999
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHhhh-hcCCC----chhHHHHHHHHHHHHHHHHhchhhhhhhHhccCCchhHhHHHH
Q 008208 378 NLGSACLGSLFVPTIEALRIVARGLNL-LEGED----EFMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDT 452 (574)
Q Consensus 378 hfGSIc~GSLIvaiI~~lR~il~~l~~-l~~~~----~~l~~c~~C~l~cle~~l~y~Nk~Ayi~iAI~G~~F~~SAk~a 452 (574)
|+||+|+|||++++|+++|.++|++++ +++.. ++++||+.||+||+|++++|+|||||+|+|||||+||+|||||
T Consensus 376 hlGSi~~GSliv~iV~i~R~iL~~i~~~lk~~~~~~~~~~~~c~~Cc~w~le~~i~~lNrnAYi~iAiyGk~Fc~SAkda 455 (577)
T KOG1362|consen 376 HLGSICFGSLLVALVRILRVILRYIRHKLKGSQNAAARILLMCLKCCFWCLEKFIKFLNRNAYVMIAIYGKNFCTSAKDA 455 (577)
T ss_pred hccchhhhhhHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhcCcchheeeeccCccchHHHHHH
Confidence 999999999999999999999999984 55543 5999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCccceecccchHHHHHHHhHHHHHHHHHHHHHHhhccCCc--chhHHHHHHHHHH-HHHHhhhhhhhHHHHHH
Q 008208 453 WALFERQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAKVHQP--FTATISLLTFIIG-YLMTRIAMALPQACVSC 529 (574)
Q Consensus 453 ~~L~~~n~~~~lv~~~l~~~vlfLg~l~vg~i~~li~~~~~~~~~~~--~~~~p~liaf~Ig-y~I~~~f~sV~~s~VdT 529 (574)
|+|+++|..+.+..|.++++++|+|++. +++++.+...|....++. +++.+.++++++| |+|+++|+++++++|||
T Consensus 456 ~~ll~~Nv~~vv~~d~vs~~llflgk~l-~~~~~g~~g~~~l~~~~~~l~~y~V~lla~iig~ylIa~~f~~v~~m~Vdt 534 (577)
T KOG1362|consen 456 WELLRRNVLRVVDVDLVSDFLLFLGKLL-GAIGSGVAGIWLLIGRKDVLYYYVVPLLAFIIGAYLIAHIFFSVLEMCVDT 534 (577)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHhcCCCcceeEeHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999444444455666677766655 455555555555544444 5566788888888 99999999999999999
Q ss_pred HHHHhhccCCCCcccccchhHHHHH
Q 008208 530 YYVCYAQNPDNRLFDSTIKDRLSLM 554 (574)
Q Consensus 530 ifvCfaeDpe~~~~~~~~p~~~~~l 554 (574)
+|+||+||||....+.+.|.+.++.
T Consensus 535 lflCf~eD~e~n~gs~~~p~~~~~~ 559 (577)
T KOG1362|consen 535 LFLCFAEDPESNDGSPEKPQFMSEQ 559 (577)
T ss_pred hhheeEecHhhcCCCCCcceeeeHH
Confidence 9999999999544554566644443
No 2
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=100.00 E-value=1.8e-58 Score=483.84 Aligned_cols=288 Identities=26% Similarity=0.507 Sum_probs=256.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHhc-----cc-----c
Q 008208 253 GVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGA-----LN-----F 322 (574)
Q Consensus 253 ~i~~ii~ai~~~ly~~~~r~RI~~aiaiLk~As~~i~~~p~l~~~~~~~~ii~~~~~~~W~~~~iG~-----~~-----~ 322 (574)
++++.+++++.++++++.||||++|++++|+|+++++++|+++++|+++.++.++|+++|+.+..+. .. .
T Consensus 3 ~ii~~i~~~i~~~~~~~~r~rI~~a~~vlk~A~~~l~~~p~l~~~p~~~~~~~~~~~~~w~~~~~~l~~~g~~~~~~~~~ 82 (334)
T PF04515_consen 3 AIIFLILALIIILFIIFLRKRIPFAIAVLKVASKALRSNPSLLLVPIITFIVQLVFFVLWIIVVLYLFSIGSPVINPCNL 82 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCC
Confidence 4555666666667778889999999999999999999999999999999999999999999987622 10 0
Q ss_pred ------------cC---chHHHHHHHHHHHHHHHHHhcccccceeeeeeEeeecCCC-----ccHHHHHHHHHhhchhhh
Q 008208 323 ------------YF---PPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQ-----SSTQFCFQRALTQNLGSA 382 (574)
Q Consensus 323 ------------~~---~~~~~~~~lfs~~Wt~~vi~~v~~~tvAg~va~WYF~~~~-----~pv~~Sf~ra~tyhfGSI 382 (574)
++ ..++.+|++|+++|+++|++|++|+++||++++|||++++ .|+.+|++|+++|||||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~W~~~~i~~~~~~~vag~v~~WYF~~~~~~~~~~~~~~s~~~~~~~~~GSi 162 (334)
T PF04515_consen 83 PFSSGSISCCQFVFDSWSYWLIIYHLFSFFWTSQFILNVQQFTVAGVVAQWYFSRDKPNMPKSPVLRSLKRALTYHFGSI 162 (334)
T ss_pred CcccccccceeeecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCCcccccchHHHHHHHHHHHHhHHHH
Confidence 11 2257789999999999999999999999999999997542 689999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhhcCC-----CchhHHHHHHHHHHHHHHHHhchhhhhhhHhccCCchhHhHHHHHHHHH
Q 008208 383 CLGSLFVPTIEALRIVARGLNLLEGE-----DEFMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDTWALFE 457 (574)
Q Consensus 383 c~GSLIvaiI~~lR~il~~l~~l~~~-----~~~l~~c~~C~l~cle~~l~y~Nk~Ayi~iAI~G~~F~~SAk~a~~L~~ 457 (574)
|+|||++++++++|.+++++++..++ .+++.||+.||++|+|+++||+|||||+|+||||++||+|||++++|++
T Consensus 163 ~~gSlivaiv~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~e~~l~~~n~~ayi~~ai~G~~F~~sak~~~~L~~ 242 (334)
T PF04515_consen 163 CFGSLIVAIVQFLRFLLRYLRRRAKKSQNKFVKFILCCLSCCLWCLEKFLEYINKYAYIYIAIYGKSFCESAKRAFELIK 242 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 99999999999999999998864332 3689999999999999999999999999999999999999999999999
Q ss_pred hcCccceecccchHHHHHHHhHHHHHHHHHHHHHHhhc----cCCcchhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 008208 458 RQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAK----VHQPFTATISLLTFIIGYLMTRIAMALPQACVSCYYVC 533 (574)
Q Consensus 458 ~n~~~~lv~~~l~~~vlfLg~l~vg~i~~li~~~~~~~----~~~~~~~~p~liaf~Igy~I~~~f~sV~~s~VdTifvC 533 (574)
||+.++..+|++++.++++|+++++.+++++++.+... .+.++..+|+++++++||.++++|++++++++||+|+|
T Consensus 243 ~n~~~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~f~~v~~~~vdti~vc 322 (334)
T PF04515_consen 243 RNGLRAIIVDGLGSFVLFLGKLFISLLCGLIAYLILSNSSFKNDLSYPIVPALISFFIGYFISSIFMSVYSSAVDTIFVC 322 (334)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988887753 34456678999999999999999999999999999999
Q ss_pred hhccCCC
Q 008208 534 YAQNPDN 540 (574)
Q Consensus 534 faeDpe~ 540 (574)
|+||||.
T Consensus 323 ~~~d~e~ 329 (334)
T PF04515_consen 323 YAEDPEM 329 (334)
T ss_pred HHHHhhh
Confidence 9999993
No 3
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.06 E-value=0.0077 Score=68.61 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=11.9
Q ss_pred HHHHHHhcCCCCCCCCCCCcC
Q 008208 550 RLSLMKAGRDVVVPTPRVPHR 570 (574)
Q Consensus 550 ~~~~l~~~~~~~~p~~~~~~~ 570 (574)
+.+.|+++-..+.+.-|.|||
T Consensus 1046 lLeaLqsgaafr~rrk~~prq 1066 (1102)
T KOG1924|consen 1046 LLEALQSGAAFRTRRKRLPRQ 1066 (1102)
T ss_pred HHHHHHhhccccCcccccCCC
Confidence 666677665555554445544
No 4
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=95.81 E-value=0.013 Score=66.85 Aligned_cols=21 Identities=10% Similarity=-0.035 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHhHhhhhcC
Q 008208 272 QRIGFCCKVLIISLQPVSKFS 292 (574)
Q Consensus 272 ~RI~~aiaiLk~As~~i~~~p 292 (574)
+-|+=++.-..+||.=+++..
T Consensus 795 nniKP~i~avt~ACEE~rkSe 815 (1102)
T KOG1924|consen 795 NNIKPDIVAVTAACEELRKSE 815 (1102)
T ss_pred hhcChHHHHHHHHHHHHHhhh
Confidence 445555555556666666543
No 5
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=90.08 E-value=0.34 Score=60.66 Aligned_cols=10 Identities=10% Similarity=0.208 Sum_probs=6.3
Q ss_pred eeeeeeEeee
Q 008208 351 VCRVISLYYI 360 (574)
Q Consensus 351 vAg~va~WYF 360 (574)
-.|+.++||.
T Consensus 1843 sLGaYaTWy~ 1852 (2039)
T PRK15319 1843 NLGVYATWFA 1852 (2039)
T ss_pred eEEEEEEeec
Confidence 3466667775
No 6
>PHA03247 large tegument protein UL36; Provisional
Probab=84.80 E-value=1.6 Score=56.60 Aligned_cols=19 Identities=11% Similarity=0.106 Sum_probs=12.0
Q ss_pred HhhhHHHHHHHHHHHhHhh
Q 008208 270 VSQRIGFCCKVLIISLQPV 288 (574)
Q Consensus 270 ~r~RI~~aiaiLk~As~~i 288 (574)
+++|++.+=..|.-.++.+
T Consensus 3121 i~r~lr~TR~~L~~~~~~v 3139 (3151)
T PHA03247 3121 IRRQLRRTRHALLDRSGAV 3139 (3151)
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 4677777777666555543
No 7
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=83.71 E-value=3.7 Score=44.48 Aligned_cols=15 Identities=13% Similarity=0.162 Sum_probs=7.4
Q ss_pred CCCCCCCCCCCCCCC
Q 008208 92 IATPPPSQPSRQAPR 106 (574)
Q Consensus 92 ~~~~~~~~~~~~~~~ 106 (574)
..|++.+.++.+++|
T Consensus 325 ~~p~~~q~p~~Pp~~ 339 (487)
T KOG4672|consen 325 ASPTNFQPPYGPPPG 339 (487)
T ss_pred cccCcCCCCCCCCCc
Confidence 334455555555553
No 8
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=83.07 E-value=2.3 Score=49.05 Aligned_cols=17 Identities=12% Similarity=0.175 Sum_probs=7.0
Q ss_pred CCCCCCCCCCCCCCCCC
Q 008208 94 TPPPSQPSRQAPRIATP 110 (574)
Q Consensus 94 ~~~~~~~~~~~~~~~~~ 110 (574)
+++..++++++++.|++
T Consensus 991 ~~~s~~~s~~~~~~p~s 1007 (1106)
T KOG0162|consen 991 VSTSTTTSQQPSARPSS 1007 (1106)
T ss_pred CCcccccccccccCCCC
Confidence 33333444444444443
No 9
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=81.87 E-value=2.9 Score=41.54 Aligned_cols=17 Identities=41% Similarity=0.720 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCCCCCCC
Q 008208 99 QPSRQAPRIATPPPSQP 115 (574)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ 115 (574)
+|+++++.+.++||.+|
T Consensus 157 ~Ps~~~ts~~~s~~~~p 173 (205)
T PF12238_consen 157 QPSAPSTSPGTSPPGTP 173 (205)
T ss_pred CCCCCCCCCCCCCCCCC
Confidence 66666666555554333
No 10
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.27 E-value=6 Score=42.28 Aligned_cols=48 Identities=27% Similarity=0.517 Sum_probs=28.1
Q ss_pred CCCCcEEEEeCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008208 73 PTNPLRIVINGGRRVTAPRIATPPPSQPSRQAPRIATPPPSQPSRPRS 120 (574)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (574)
|.+|..=.+.+|-...-|+...|+.-+|.||||.+.+||+++-.+|++
T Consensus 403 P~rp~t~q~~~~~~~~g~a~~~pt~~~PprPppqggppP~g~~~~p~~ 450 (488)
T KOG3895|consen 403 PARPTTSQVPSGGGLPGPAQASPTRRLPPRPPPQGGPPPRGHMSDPVG 450 (488)
T ss_pred CCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCccc
Confidence 344444344333333335555677777788877777777666666654
No 11
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=76.59 E-value=4.7 Score=46.86 Aligned_cols=8 Identities=25% Similarity=0.430 Sum_probs=3.4
Q ss_pred cccccCCC
Q 008208 84 GRRVTAPR 91 (574)
Q Consensus 84 ~~~~~~~~ 91 (574)
+|-+..||
T Consensus 277 ~S~s~ppp 284 (830)
T KOG1923|consen 277 GSGSGPPP 284 (830)
T ss_pred CCCCCCCC
Confidence 44444444
No 12
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=75.61 E-value=6.2 Score=45.92 Aligned_cols=16 Identities=13% Similarity=0.169 Sum_probs=6.7
Q ss_pred cccccCCCCCCCCCCC
Q 008208 84 GRRVTAPRIATPPPSQ 99 (574)
Q Consensus 84 ~~~~~~~~~~~~~~~~ 99 (574)
.++-.+++-+|||.+.
T Consensus 273 ~s~~~S~s~ppppap~ 288 (830)
T KOG1923|consen 273 DSQPGSGSGPPPPAPL 288 (830)
T ss_pred ccCCCCCCCCCCCCCC
Confidence 3333444444444333
No 13
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=74.47 E-value=2.5 Score=50.83 Aligned_cols=8 Identities=25% Similarity=0.293 Sum_probs=3.3
Q ss_pred HHHHHHhh
Q 008208 212 QKAVRVWP 219 (574)
Q Consensus 212 l~lLr~~~ 219 (574)
+.||-..|
T Consensus 123 lkLLeNmP 130 (2365)
T COG5178 123 LKLLENMP 130 (2365)
T ss_pred HHHHhcCC
Confidence 34444333
No 14
>PRK09752 adhesin; Provisional
Probab=74.11 E-value=3.4 Score=50.38 Aligned_cols=11 Identities=9% Similarity=0.178 Sum_probs=5.9
Q ss_pred eeeeeeEeeec
Q 008208 351 VCRVISLYYIL 361 (574)
Q Consensus 351 vAg~va~WYF~ 361 (574)
-.|+.++||-.
T Consensus 1062 SvGlYaTWy~n 1072 (1250)
T PRK09752 1062 AVGLTSSWFQH 1072 (1250)
T ss_pred eeeeEEEEEec
Confidence 34555566653
No 15
>PRK15313 autotransport protein MisL; Provisional
Probab=71.95 E-value=4.4 Score=48.33 Aligned_cols=11 Identities=9% Similarity=0.226 Sum_probs=6.2
Q ss_pred ceeeeeeEeee
Q 008208 350 TVCRVISLYYI 360 (574)
Q Consensus 350 tvAg~va~WYF 360 (574)
.-.|+.++||-
T Consensus 754 YSlG~YaTWy~ 764 (955)
T PRK15313 754 YSVGLYGTWYA 764 (955)
T ss_pred eeeEeEEEEec
Confidence 34556666665
No 16
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=66.43 E-value=16 Score=39.59 Aligned_cols=20 Identities=10% Similarity=-0.140 Sum_probs=10.8
Q ss_pred ccccCcCCCCCCcchhhhhh
Q 008208 51 VNINNINGEQRGFNASMMQT 70 (574)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~ 70 (574)
-+++-..|+++.-.++|+..
T Consensus 445 ~~~~l~~d~~~~~~l~m~~~ 464 (563)
T KOG1785|consen 445 PLLELDDDVPPRTYLSMCSQ 464 (563)
T ss_pred cccccCCCcchhhHHHHHHH
Confidence 34445555666666666543
No 17
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=66.28 E-value=9.8 Score=42.37 Aligned_cols=6 Identities=0% Similarity=0.362 Sum_probs=2.3
Q ss_pred chhhhh
Q 008208 27 EEEVKD 32 (574)
Q Consensus 27 ~~~~~~ 32 (574)
+++.++
T Consensus 266 dp~~nn 271 (569)
T KOG3671|consen 266 DPPLNN 271 (569)
T ss_pred Chhhhc
Confidence 333333
No 18
>PF11081 DUF2890: Protein of unknown function (DUF2890); InterPro: IPR021304 This entry contains the 33kDa and 22kDa phosphoproteins from vertebrate adenoviruses.
Probab=62.51 E-value=18 Score=35.62 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=7.6
Q ss_pred ccCcccchHHHHH
Q 008208 141 SKKYTNKISLFLF 153 (574)
Q Consensus 141 s~~~~d~~~~~lF 153 (574)
.+.+.+++|..|+
T Consensus 121 wr~lR~~I~~tLy 133 (187)
T PF11081_consen 121 WRELRNRIFPTLY 133 (187)
T ss_pred HHHHHHHHHHHHH
Confidence 3455666666663
No 19
>KOG4425 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.46 E-value=5.8 Score=43.80 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=7.7
Q ss_pred CCCCCCCCCCCCCCC
Q 008208 97 PSQPSRQAPRIATPP 111 (574)
Q Consensus 97 ~~~~~~~~~~~~~~~ 111 (574)
+-|+.+--++++|||
T Consensus 83 kkqriek~k~~~ppp 97 (900)
T KOG4425|consen 83 KKQRIEKHKGPLPPP 97 (900)
T ss_pred hhhHhhcCCCCCCCC
Confidence 345555555554444
No 20
>PRK09752 adhesin; Provisional
Probab=62.36 E-value=8.3 Score=47.21 Aligned_cols=10 Identities=10% Similarity=-0.011 Sum_probs=4.8
Q ss_pred CCcchhhhhh
Q 008208 61 RGFNASMMQT 70 (574)
Q Consensus 61 ~~~~~~~~~~ 70 (574)
.|+-.=+|++
T Consensus 897 AGAYeY~L~k 906 (1250)
T PRK09752 897 MGAYDYTLVE 906 (1250)
T ss_pred eeeEEEEEEe
Confidence 3444445554
No 21
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.78 E-value=17 Score=42.14 Aligned_cols=16 Identities=0% Similarity=0.179 Sum_probs=8.5
Q ss_pred CCcEEEEeCcccccCC
Q 008208 75 NPLRIVINGGRRVTAP 90 (574)
Q Consensus 75 ~~~~~~~~~~~~~~~~ 90 (574)
++.+|....++...++
T Consensus 504 ~~~~~~~~~~~~~~~~ 519 (620)
T PRK14948 504 RSIKLNLESQSGSASN 519 (620)
T ss_pred CCeEEEEEecCCCCCC
Confidence 5666666554444444
No 22
>PRK15313 autotransport protein MisL; Provisional
Probab=60.83 E-value=13 Score=44.60 Aligned_cols=7 Identities=0% Similarity=-0.121 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 008208 151 FLFVLHM 157 (574)
Q Consensus 151 ~lF~~~l 157 (574)
..+..++
T Consensus 640 gsY~ANl 646 (955)
T PRK15313 640 GSYLANN 646 (955)
T ss_pred HHHHHHH
Confidence 3444433
No 23
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=60.13 E-value=30 Score=37.81 Aligned_cols=7 Identities=57% Similarity=0.354 Sum_probs=2.6
Q ss_pred cchhhhh
Q 008208 63 FNASMMQ 69 (574)
Q Consensus 63 ~~~~~~~ 69 (574)
.+++-.|
T Consensus 290 en~~~~~ 296 (487)
T KOG4672|consen 290 ENASSFQ 296 (487)
T ss_pred hcccccc
Confidence 3333333
No 24
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=60.11 E-value=22 Score=38.29 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=10.2
Q ss_pred ceeeeeeecCCCcccc
Q 008208 38 VVVEEKVVDSNSNVNI 53 (574)
Q Consensus 38 ~~~~~~~~~~~~~~~~ 53 (574)
|+++|-.|.....|..
T Consensus 124 Gvi~e~lvk~gdtV~~ 139 (457)
T KOG0559|consen 124 GVITELLVKDGDTVTP 139 (457)
T ss_pred ceeeEEecCCCCcccC
Confidence 6777776666555544
No 25
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=57.55 E-value=8 Score=46.93 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=6.3
Q ss_pred HHHHHHhhhhhHH
Q 008208 212 QKAVRVWPKFMVH 224 (574)
Q Consensus 212 l~lLr~~~~~~i~ 224 (574)
|-.++++|....+
T Consensus 112 lgalkylPhavlk 124 (2365)
T COG5178 112 LGALKYLPHAVLK 124 (2365)
T ss_pred hhhhhhchHHHHH
Confidence 3445555555433
No 26
>PHA03356 tegument protein UL11; Provisional
Probab=55.28 E-value=23 Score=30.13 Aligned_cols=7 Identities=43% Similarity=0.705 Sum_probs=5.6
Q ss_pred CcEEEEe
Q 008208 76 PLRIVIN 82 (574)
Q Consensus 76 ~~~~~~~ 82 (574)
-|||++|
T Consensus 51 elrvVTq 57 (93)
T PHA03356 51 ELRVVTQ 57 (93)
T ss_pred cceEEec
Confidence 3899987
No 27
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=54.18 E-value=11 Score=41.90 Aligned_cols=10 Identities=0% Similarity=-0.147 Sum_probs=4.7
Q ss_pred CccccccccC
Q 008208 134 ASRTALNSKK 143 (574)
Q Consensus 134 ~~~~~y~s~~ 143 (574)
.++-.|.-.+
T Consensus 31 ~RF~~Y~G~p 40 (465)
T PF01690_consen 31 ERFIGYEGVP 40 (465)
T ss_pred cceEEEeccc
Confidence 3455554444
No 28
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=52.14 E-value=49 Score=35.51 Aligned_cols=14 Identities=36% Similarity=0.487 Sum_probs=9.8
Q ss_pred chhhhhhcCCCCCc
Q 008208 64 NASMMQTLNPTNPL 77 (574)
Q Consensus 64 ~~~~~~~~~~~~~~ 77 (574)
.--|+|..+|+-|+
T Consensus 217 PP~~~~Q~~P~P~m 230 (498)
T KOG4849|consen 217 PPLMMQQVRPTPLM 230 (498)
T ss_pred CCcccccCCCCCCC
Confidence 55678888877665
No 29
>COG5373 Predicted membrane protein [Function unknown]
Probab=48.45 E-value=29 Score=41.04 Aligned_cols=6 Identities=33% Similarity=0.490 Sum_probs=2.3
Q ss_pred HHHHHH
Q 008208 312 WILAVI 317 (574)
Q Consensus 312 W~~~~i 317 (574)
|..+++
T Consensus 300 ~llafv 305 (931)
T COG5373 300 NLLAFV 305 (931)
T ss_pred HHHHHH
Confidence 333333
No 30
>PTZ00438 gamete antigen 27/25-like protein; Provisional
Probab=47.28 E-value=9 Score=39.39 Aligned_cols=29 Identities=55% Similarity=0.695 Sum_probs=13.6
Q ss_pred cccccchhhhcCCCCCCCchhhhhhhcCcceeee
Q 008208 9 ERETQNKEEEEGGGEGGGEEEVKDVEKGEVVVEE 42 (574)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (574)
||.||.+|||+. +-||++.||+-|+|-||
T Consensus 102 ergtq~~e~e~~-----~ve~i~eveevevveee 130 (374)
T PTZ00438 102 ERGTQKEEEEDE-----DVEEIEEVEEVEVVEEE 130 (374)
T ss_pred hcCccchhhhhh-----hhhhhhhhhhhhhhhhh
Confidence 455665555432 33344445544444333
No 31
>PRK06863 single-stranded DNA-binding protein; Provisional
Probab=46.90 E-value=27 Score=33.76 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=15.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008208 94 TPPPSQPSRQAPRIATPPPSQPSRPRSISTS 124 (574)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (574)
.|+.+-+.++....|.-|.++|.|++..++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (168)
T PRK06863 125 APQQSYQAGQTNNGNSQQASRPAPQQAAPQA 155 (168)
T ss_pred CccccccccccccCccCcccccCcccccccc
Confidence 3444444344445555566666666654433
No 32
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=46.50 E-value=3e+02 Score=27.10 Aligned_cols=17 Identities=18% Similarity=0.419 Sum_probs=9.4
Q ss_pred CCCCCCcchhhhhhcCCC
Q 008208 57 NGEQRGFNASMMQTLNPT 74 (574)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~ 74 (574)
..|..|.+|+.+=- +|+
T Consensus 40 eaQk~G~tA~~lfG-~P~ 56 (206)
T PF06570_consen 40 EAQKKGKTARQLFG-DPK 56 (206)
T ss_pred HHHhCCCcHHHHcC-CHH
Confidence 34556666665544 444
No 33
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.33 E-value=30 Score=37.00 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=13.7
Q ss_pred eeecCCCcccccCcC-CCCCCcchh
Q 008208 43 KVVDSNSNVNINNIN-GEQRGFNAS 66 (574)
Q Consensus 43 ~~~~~~~~~~~~~~~-~~~~~~~~~ 66 (574)
+-||+|..|-.---| -.+++.+..
T Consensus 101 ~hVd~nG~V~LPYLh~W~~pssdLv 125 (365)
T KOG2391|consen 101 EHVDPNGKVYLPYLHNWDPPSSDLV 125 (365)
T ss_pred hccCCCCeEechhhccCCCccchHH
Confidence 457777777665433 345555543
No 34
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=45.13 E-value=49 Score=33.05 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=13.0
Q ss_pred CCchhhhhhhcCcceeeeeee-cCCCcccc
Q 008208 25 GGEEEVKDVEKGEVVVEEKVV-DSNSNVNI 53 (574)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 53 (574)
++.+|.++.=|-.+--+|-+| |-|.-|++
T Consensus 81 ~~~~~~~~YyKkhIy~~d~~v~d~~~lv~~ 110 (205)
T PF12238_consen 81 EGREKMTKYYKKHIYKEDSEVKDYNGLVKF 110 (205)
T ss_pred ccHHHHHHHHHHhccCcccccccHHHHHHH
Confidence 445555544444333334444 44444443
No 35
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=41.88 E-value=25 Score=39.30 Aligned_cols=26 Identities=31% Similarity=0.690 Sum_probs=13.4
Q ss_pred ccCCCCCCCCCCCCCCC--CCCCCCCCC
Q 008208 87 VTAPRIATPPPSQPSRQ--APRIATPPP 112 (574)
Q Consensus 87 ~~~~~~~~~~~~~~~~~--~~~~~~~~~ 112 (574)
+--|++||||+..|.|+ -+|.|||||
T Consensus 227 ~~~P~~P~~P~~~P~~~~L~~GvPPPPP 254 (817)
T KOG1925|consen 227 PKEPLIPASPKELPTRDFLLSGVPPPPP 254 (817)
T ss_pred CCCCCCCCChhccCCchhhhcCCCCCCC
Confidence 34455556666655443 345555443
No 36
>KOG4090 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.19 E-value=54 Score=31.19 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=5.6
Q ss_pred CCCCCCCCCCCCCC
Q 008208 97 PSQPSRQAPRIATP 110 (574)
Q Consensus 97 ~~~~~~~~~~~~~~ 110 (574)
...+.|.++..+-|
T Consensus 15 rp~~arap~~~aap 28 (157)
T KOG4090|consen 15 RPAAARAPSPAAAP 28 (157)
T ss_pred CCccccCCCcccCC
Confidence 33343444443333
No 37
>PRK03427 cell division protein ZipA; Provisional
Probab=40.52 E-value=88 Score=33.55 Aligned_cols=22 Identities=23% Similarity=0.024 Sum_probs=10.7
Q ss_pred cceeeeeeecCCCcccccCcCC
Q 008208 37 EVVVEEKVVDSNSNVNINNING 58 (574)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~ 58 (574)
+||-|.+|..++.+-..+.+++
T Consensus 61 dGvGevrv~~~~~~~~~~~~~~ 82 (333)
T PRK03427 61 EGVGEVRVHRVNHAPANAQEHE 82 (333)
T ss_pred cCccceeccCCCCCCCcccccc
Confidence 3444555555554444444444
No 38
>PRK13335 superantigen-like protein; Reviewed
Probab=39.05 E-value=71 Score=34.14 Aligned_cols=6 Identities=50% Similarity=0.429 Sum_probs=2.4
Q ss_pred eeeecC
Q 008208 42 EKVVDS 47 (574)
Q Consensus 42 ~~~~~~ 47 (574)
||+-.|
T Consensus 85 E~~s~S 90 (356)
T PRK13335 85 EKTSAS 90 (356)
T ss_pred hccccC
Confidence 444333
No 39
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=38.92 E-value=88 Score=37.52 Aligned_cols=14 Identities=14% Similarity=0.323 Sum_probs=6.8
Q ss_pred CCchhHhHHHHHHH
Q 008208 442 GKGFVQASQDTWAL 455 (574)
Q Consensus 442 G~~F~~SAk~a~~L 455 (574)
+..|+.+.++-.+.
T Consensus 716 ~~~f~~~~~~fl~~ 729 (833)
T KOG1922|consen 716 GDPFSKVKKEFLSS 729 (833)
T ss_pred cchhhhhhhhhhhh
Confidence 44555555544333
No 40
>PF10110 GPDPase_memb: Membrane domain of glycerophosphoryl diester phosphodiesterase; InterPro: IPR018476 Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase [].
Probab=38.73 E-value=78 Score=29.48 Aligned_cols=32 Identities=19% Similarity=0.246 Sum_probs=27.2
Q ss_pred hhhhhhHhccCCchhHhHHHHHHHHHhcCccc
Q 008208 432 GWAYVQIAAYGKGFVQASQDTWALFERQEMEP 463 (574)
Q Consensus 432 k~Ayi~iAI~G~~F~~SAk~a~~L~~~n~~~~ 463 (574)
-++.-.+.+.++++.+|-|++|+|.++|.++.
T Consensus 104 if~lp~~vle~~~~~~A~k~Sw~ltk~~~~~~ 135 (149)
T PF10110_consen 104 IFVLPLIVLENKSFKEALKESWQLTKGRFWRI 135 (149)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHcCcHHHH
Confidence 45667788999999999999999999976553
No 41
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=38.07 E-value=30 Score=37.12 Aligned_cols=25 Identities=24% Similarity=0.171 Sum_probs=17.6
Q ss_pred HHhhhHHHHHHHHHHHhHhhhhcCc
Q 008208 269 WVSQRIGFCCKVLIISLQPVSKFSD 293 (574)
Q Consensus 269 ~~r~RI~~aiaiLk~As~~i~~~p~ 293 (574)
-+..||+.-..-|++-.+.+.++|.
T Consensus 264 kvY~ridQP~~AL~~~~~gld~fP~ 288 (478)
T KOG1129|consen 264 KVYQRIDQPERALLVIGEGLDSFPF 288 (478)
T ss_pred HHHHHhccHHHHHHHHhhhhhcCCc
Confidence 3457777777777777777777775
No 42
>PRK10649 hypothetical protein; Provisional
Probab=36.75 E-value=1.6e+02 Score=34.05 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHH
Q 008208 204 SISLSFSWQKAVRVWPKFMVH 224 (574)
Q Consensus 204 s~vls~iwl~lLr~~~~~~i~ 224 (574)
+++++++|+..+-.+|+..-.
T Consensus 49 ~~~~~~~~~~~~~l~p~~~~~ 69 (577)
T PRK10649 49 ALLFSSLWLIPVFLFPRRIRI 69 (577)
T ss_pred HHHHHHHHHHHHHHhhHHHHH
Confidence 666777888877777777433
No 43
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=36.46 E-value=67 Score=36.45 Aligned_cols=10 Identities=30% Similarity=0.281 Sum_probs=5.7
Q ss_pred hhhhhcCCCC
Q 008208 66 SMMQTLNPTN 75 (574)
Q Consensus 66 ~~~~~~~~~~ 75 (574)
.-.|.|=|..
T Consensus 252 q~YqELLPKv 261 (574)
T PF07462_consen 252 QAYQELLPKV 261 (574)
T ss_pred HHHHHhCCCC
Confidence 3456676743
No 44
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=36.36 E-value=46 Score=32.51 Aligned_cols=10 Identities=20% Similarity=0.169 Sum_probs=5.3
Q ss_pred hhhhhcCCCC
Q 008208 66 SMMQTLNPTN 75 (574)
Q Consensus 66 ~~~~~~~~~~ 75 (574)
+|.+.+||+.
T Consensus 154 a~~~~~~~~a 163 (225)
T KOG3397|consen 154 AMNHFQNAAA 163 (225)
T ss_pred hhhhhhcccc
Confidence 4455555554
No 45
>KOG3622 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.29 E-value=73 Score=38.80 Aligned_cols=11 Identities=27% Similarity=0.259 Sum_probs=5.0
Q ss_pred ccCCCCCCCCC
Q 008208 87 VTAPRIATPPP 97 (574)
Q Consensus 87 ~~~~~~~~~~~ 97 (574)
-+.|+++||+|
T Consensus 84 ~~~~~~~~~~~ 94 (1572)
T KOG3622|consen 84 REAPPIPPRSM 94 (1572)
T ss_pred ccCCCCCCccc
Confidence 34444445544
No 46
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=34.85 E-value=25 Score=38.06 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=13.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC
Q 008208 96 PPSQPSRQAPRIATPPPSQPSRPRS 120 (574)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (574)
.||||.-|+||++-|||| |.|+++
T Consensus 392 aKsq~~~p~~r~~~p~pn-p~pidp 415 (442)
T PF06637_consen 392 AKSQPMTPGPRPVGPVPN-PPPIDP 415 (442)
T ss_pred hccCCCCCCCCCCCCCCC-CCCCCh
Confidence 355665555666556653 445663
No 47
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=34.44 E-value=88 Score=29.58 Aligned_cols=22 Identities=45% Similarity=0.937 Sum_probs=11.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q 008208 110 PPPSQPSRPRSISTSPPAPTPT 131 (574)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~ 131 (574)
|||=.|.++++...+||||=|+
T Consensus 130 PPpYsp~~~~~~~~spPppYpg 151 (155)
T PF10873_consen 130 PPPYSPTPQQSAQRSPPPPYPG 151 (155)
T ss_pred CcCCCCcccccccCCCccCCCC
Confidence 4444555555555555555443
No 48
>PF05750 Rubella_Capsid: Rubella capsid protein; InterPro: IPR008819 Rubella virus is an enveloped positive-strand RNA virus of the family Togaviridae. Virions are composed of three structural proteins: a capsid and two membrane-spanning glycoproteins, E2 and E1. During virus assembly, the capsid interacts with genomic RNA to form nucleocapsids. It has been discovered that capsid phosphorylation serves to negatively regulate binding of viral genomic RNA. This may delay the initiation of nucleocapsid assembly until sufficient amounts of virus glycoproteins accumulate at the budding site and/or prevent non-specific binding to cellular RNA when levels of genomic RNA are low. It follows that at a late stage in replication, the capsid may undergo dephosphorylation before nucleocapsid assembly occurs []. This family is found together with IPR008820 from INTERPRO and IPR008821 from INTERPRO.; GO: 0016021 integral to membrane, 0019013 viral nucleocapsid
Probab=32.37 E-value=58 Score=31.86 Aligned_cols=10 Identities=40% Similarity=0.527 Sum_probs=4.7
Q ss_pred CCCCCCCCCC
Q 008208 94 TPPPSQPSRQ 103 (574)
Q Consensus 94 ~~~~~~~~~~ 103 (574)
||..-|-+|+
T Consensus 80 ppeerqesrs 89 (300)
T PF05750_consen 80 PPEERQESRS 89 (300)
T ss_pred Chhhhhhhhc
Confidence 4444444443
No 49
>KOG2928 consensus Origin recognition complex, subunit 2 [Replication, recombination and repair]
Probab=32.16 E-value=48 Score=37.01 Aligned_cols=80 Identities=11% Similarity=0.055 Sum_probs=46.9
Q ss_pred CCccccccccchhhhcCCCCCCCchhhhhhhcCcceeeeeeec--CCCcccccCcCCCCCCcchhhhhhcCCCCCcEEEE
Q 008208 4 SDPVVERETQNKEEEEGGGEGGGEEEVKDVEKGEVVVEEKVVD--SNSNVNINNINGEQRGFNASMMQTLNPTNPLRIVI 81 (574)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (574)
-||+.++.++|+-|-.+ -+-+++++-+-+++++--+.-++++ +..|||+...-.- .+.. +|.-+..+-.++.+.+
T Consensus 18 ~~~~~~~~~~n~~e~~~-rd~qes~~~~~~~e~~nt~~~~~~~~~t~~~~~~~sk~a~-k~~~-~~~~~~~~~~~i~~~~ 94 (518)
T KOG2928|consen 18 PDPQEKLKTPNYVERKD-RDIQESLTDRSKKEEKNTISSKKKRKHTEGNVNEESKTAN-KPVK-TGIKEKMNRPKILKRT 94 (518)
T ss_pred CCchhcccccccccccc-chhhhhcccccccCCCcccChhhcccCCcchhhhhhcccC-Cchh-hhhhhhccCccccccC
Confidence 48889999999988777 3444444444455555444444444 4456665544443 2222 6667777777777765
Q ss_pred eCccc
Q 008208 82 NGGRR 86 (574)
Q Consensus 82 ~~~~~ 86 (574)
--..+
T Consensus 95 ~~~~~ 99 (518)
T KOG2928|consen 95 TVQPS 99 (518)
T ss_pred CcCCC
Confidence 43333
No 50
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=31.30 E-value=1.2e+02 Score=33.38 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=14.2
Q ss_pred hhhcCCCCCCCc--------hhhhhhhcCcceeeee
Q 008208 16 EEEEGGGEGGGE--------EEVKDVEKGEVVVEEK 43 (574)
Q Consensus 16 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 43 (574)
+..+|+.++++. ||.+.++.|+-..+.+
T Consensus 182 ~~~Dg~~r~~k~~Rk~~~rr~ew~~~a~g~el~~n~ 217 (518)
T KOG1830|consen 182 KRNDGPKRPNKKPRKPHNRREEWRKLAYGDELHPNN 217 (518)
T ss_pred ccccCCCCccccccCCCCccHHHHHhhcchhhCcch
Confidence 444555555443 4455666665444433
No 51
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.26 E-value=72 Score=34.35 Aligned_cols=62 Identities=21% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-HHHHHHHHHHHHhccCCcchHHHH-HHHHHHHHHHH
Q 008208 195 PQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSF-FLSLSAGILLICFQKPATDGVGVC-FIAFAIGNGLY 266 (574)
Q Consensus 195 ~~i~~~~~ls~vls~iwl~lLr~~~~~~i~~~vw~~i-il~~~~~i~~~~~~~~~~~~~~i~-~ii~ai~~~ly 266 (574)
+.+-...++-+++..+-+.|+..||+.|=..+.+.++ .+++++.++ .++|+ +++|+|.+++|
T Consensus 187 ~~~~~vl~~~fvl~tlaivLFPLWP~~mR~gvyY~sig~~gfl~~Il----------vLaIvRlILF~I~~il~ 250 (372)
T KOG2927|consen 187 PLMWQVLGVLFVLVTLAIVLFPLWPRRMRQGVYYLSIGAGGFLAFIL----------VLAIVRLILFGITWILT 250 (372)
T ss_pred chhHHHHHHHHHHHHHHHHhcccCcHHHhcceeeeecchhHHHHHHH----------HHHHHHHHHHHHHHHHh
No 52
>KOG2418 consensus Microtubule-associated protein TAU [Cytoskeleton]
Probab=30.82 E-value=1.3e+02 Score=32.62 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=5.5
Q ss_pred hhhcCCCC-CcEEE
Q 008208 68 MQTLNPTN-PLRIV 80 (574)
Q Consensus 68 ~~~~~~~~-~~~~~ 80 (574)
=|+.+|++ |.|=.
T Consensus 198 ~~~~t~~r~pir~p 211 (448)
T KOG2418|consen 198 PQHKTPQRSPIRPP 211 (448)
T ss_pred ccccccccCCccCc
Confidence 34444432 44444
No 53
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=30.40 E-value=74 Score=34.21 Aligned_cols=10 Identities=30% Similarity=0.331 Sum_probs=5.2
Q ss_pred cCCCCCcEEE
Q 008208 71 LNPTNPLRIV 80 (574)
Q Consensus 71 ~~~~~~~~~~ 80 (574)
++|.-||+|-
T Consensus 242 ~~P~~~~Q~~ 251 (498)
T KOG4849|consen 242 QAPQMRLQIN 251 (498)
T ss_pred cCcccCcCcC
Confidence 3455555554
No 54
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=30.22 E-value=1.1e+02 Score=31.97 Aligned_cols=11 Identities=45% Similarity=0.619 Sum_probs=6.3
Q ss_pred eeecCCCcccc
Q 008208 43 KVVDSNSNVNI 53 (574)
Q Consensus 43 ~~~~~~~~~~~ 53 (574)
|+|||..-|..
T Consensus 114 ~lv~~~di~e~ 124 (274)
T PLN02983 114 KLVDSRDIVEL 124 (274)
T ss_pred hhhccccceee
Confidence 56676655443
No 55
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=29.37 E-value=18 Score=37.77 Aligned_cols=20 Identities=5% Similarity=-0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008208 197 VEAASLLSISLSFSWQKAVR 216 (574)
Q Consensus 197 i~~~~~ls~vls~iwl~lLr 216 (574)
++.++++-+++-.+.+.++|
T Consensus 54 vl~sfAvvliiIIiIImlF~ 73 (381)
T PF05297_consen 54 VLYSFAVVLIIIIIIIMLFK 73 (381)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 56
>PF14017 DUF4233: Protein of unknown function (DUF4233)
Probab=29.34 E-value=4.2e+02 Score=23.74 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 008208 251 GVGVCFIAFAIGNGLYACWVSQRIGFC 277 (574)
Q Consensus 251 ~~~i~~ii~ai~~~ly~~~~r~RI~~a 277 (574)
..+++.++|+..+ .|..++++||+.-
T Consensus 78 ~m~vvG~iF~~~W-~~~l~lg~~i~~~ 103 (107)
T PF14017_consen 78 AMFVVGVIFAAVW-WYALYLGRRIDRR 103 (107)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 4566677788777 6777788888753
No 57
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=27.63 E-value=1.9e+02 Score=33.94 Aligned_cols=56 Identities=14% Similarity=0.044 Sum_probs=30.9
Q ss_pred chhhhhhhcC-cceeeeeeecCCCcccccCcCCCCCCcchhhhh--hcCCCCCcEEEEe
Q 008208 27 EEEVKDVEKG-EVVVEEKVVDSNSNVNINNINGEQRGFNASMMQ--TLNPTNPLRIVIN 82 (574)
Q Consensus 27 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 82 (574)
|-.|+.++.- -.++|...--.|||+++..-+.+.-+.+-+-+- ++++++-|.-+.-
T Consensus 123 qt~v~~~a~pSf~~y~a~~~~~~Sn~t~~~f~~~ss~s~~~~~~~~~~~~~~~lk~~~g 181 (944)
T KOG4307|consen 123 QTAVNPYAAPSFAGYEASYPPQNSNATRTSFNNQSSYSNRQEISQNHQENSVKLKDPFG 181 (944)
T ss_pred ccccccccCCCcceeeeccCccccccccceeccccccCCchhhhhhccCCceeecccCC
Confidence 3344444432 234555555668888887777666655554443 3455555555443
No 58
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=27.62 E-value=1e+02 Score=33.59 Aligned_cols=20 Identities=10% Similarity=0.325 Sum_probs=10.0
Q ss_pred CCCCCcEEEEeCcccccCCC
Q 008208 72 NPTNPLRIVINGGRRVTAPR 91 (574)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~ 91 (574)
.|+.|=+.+++.-..+++-+
T Consensus 58 ~~~~~~~~v~~~t~~f~p~~ 77 (376)
T PRK13855 58 EPAPPSTMIATNTKPFHPAP 77 (376)
T ss_pred CCCCCCcceecccCCCCCCC
Confidence 35556666665444444333
No 59
>PHA03211 serine/threonine kinase US3; Provisional
Probab=27.13 E-value=64 Score=35.94 Aligned_cols=7 Identities=0% Similarity=0.150 Sum_probs=3.3
Q ss_pred cchHHHH
Q 008208 146 NKISLFL 152 (574)
Q Consensus 146 d~~~~~l 152 (574)
.++|...
T Consensus 66 ~~~~~~~ 72 (461)
T PHA03211 66 ARLCQIQ 72 (461)
T ss_pred HHHHHHH
Confidence 4456443
No 60
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.37 E-value=1e+02 Score=33.37 Aligned_cols=7 Identities=29% Similarity=0.197 Sum_probs=4.1
Q ss_pred hcCCCCC
Q 008208 70 TLNPTNP 76 (574)
Q Consensus 70 ~~~~~~~ 76 (574)
.+.+++|
T Consensus 391 aq~l~~~ 397 (488)
T KOG3895|consen 391 AQLLTRP 397 (488)
T ss_pred hhccCCC
Confidence 4556666
No 61
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=26.05 E-value=1.1e+02 Score=34.80 Aligned_cols=48 Identities=23% Similarity=0.360 Sum_probs=37.3
Q ss_pred CCCCccccccccchhhhcCCCCCCCchhhhhhhcCcceeeeeeecCCCc
Q 008208 2 GASDPVVERETQNKEEEEGGGEGGGEEEVKDVEKGEVVVEEKVVDSNSN 50 (574)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (574)
|.+.|++.|+-.++...|.-|. +|+++.|++--.....+-+.+|.+.+
T Consensus 149 gv~eP~i~~~g~~rI~velpG~-~d~~~a~~ll~~ta~l~f~~v~~~~~ 196 (506)
T COG0342 149 GVAEPVIQRQGADRIVVELPGV-QDTARAKDLLGKTATLEFRLVDDSVK 196 (506)
T ss_pred ccCCCeeeeccCceeEEeCCCC-cCHHHHHHHhcCCCceEEEecCcccc
Confidence 7789999999888877777776 56667777776678888888888733
No 62
>PHA03378 EBNA-3B; Provisional
Probab=25.63 E-value=1.1e+02 Score=35.77 Aligned_cols=14 Identities=21% Similarity=0.138 Sum_probs=6.6
Q ss_pred cccCcCCCCCCcch
Q 008208 52 NINNINGEQRGFNA 65 (574)
Q Consensus 52 ~~~~~~~~~~~~~~ 65 (574)
.|.|++-++...++
T Consensus 668 ~~~hi~~~p~~~~~ 681 (991)
T PHA03378 668 QIGHIPYQPSPTGA 681 (991)
T ss_pred ccCCcCCCCCCCCc
Confidence 34455555544433
No 63
>PF15359 CDV3: Carnitine deficiency-associated protein 3
Probab=25.58 E-value=1.3e+02 Score=27.96 Aligned_cols=17 Identities=18% Similarity=0.051 Sum_probs=9.9
Q ss_pred CCCCCCCCCCCCCCCCC
Q 008208 94 TPPPSQPSRQAPRIATP 110 (574)
Q Consensus 94 ~~~~~~~~~~~~~~~~~ 110 (574)
|.+.+..||+|..+-..
T Consensus 82 p~~~~gvY~PP~~R~~~ 98 (129)
T PF15359_consen 82 PATTSGVYRPPAARNTT 98 (129)
T ss_pred CCCCCceecCccccccc
Confidence 45566667776655443
No 64
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=25.58 E-value=1.2e+02 Score=31.64 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=8.1
Q ss_pred cccccCcccchHHHHHH
Q 008208 138 ALNSKKYTNKISLFLFV 154 (574)
Q Consensus 138 ~y~s~~~~d~~~~~lF~ 154 (574)
-|=+|.|.|.-++.||+
T Consensus 164 nylARNFYNlr~lALfl 180 (274)
T PF06459_consen 164 NYLARNFYNLRFLALFL 180 (274)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445555544555543
No 65
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=25.25 E-value=2e+02 Score=35.04 Aligned_cols=102 Identities=25% Similarity=0.406 Sum_probs=0.0
Q ss_pred hhcCCCCCCCchhhhhhhcCcceeeeeeecCCCcccc-------cCcCCCCCCcchhhhhhcCCCCCcEEEEeCcccccC
Q 008208 17 EEEGGGEGGGEEEVKDVEKGEVVVEEKVVDSNSNVNI-------NNINGEQRGFNASMMQTLNPTNPLRIVINGGRRVTA 89 (574)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (574)
|.||+||||+|----.-...||--+-|-+|-+..-.- ++++|-.--.--..+|...|... ..
T Consensus 115 ~~e~e~e~e~es~d~rs~nd~gssdpkdidqdnrstSpsipSP~snEsDSDSSAqq~~sQsq~pps~-----------~a 183 (982)
T PF03154_consen 115 ESEGEGEGEGESSDGRSVNDDGSSDPKDIDQDNRSTSPSIPSPQSNESDSDSSAQQQSSQSQHPPSA-----------QA 183 (982)
T ss_pred cccccccCcccccccccccccCCCCccccccccccCCCCCCCccccccCccccccCCCCCCCCCccc-----------cC
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008208 90 PRIATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPT 129 (574)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (574)
|+...+..+.+..+++...-|+..+|.-.+...+++.+++
T Consensus 184 PP~~SpSpSpPsppPSSps~Ppq~SPsSSspss~p~~Pp~ 223 (982)
T PF03154_consen 184 PPALSPSPSPPSPPPSSPSAPPQPSPSSSSPSSQPQQPPP 223 (982)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
No 66
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=24.93 E-value=1.1e+02 Score=26.74 Aligned_cols=7 Identities=29% Similarity=0.377 Sum_probs=2.7
Q ss_pred CCCCCCC
Q 008208 113 SQPSRPR 119 (574)
Q Consensus 113 ~~~~~~~ 119 (574)
++|.+++
T Consensus 73 ~~~~~~~ 79 (92)
T PRK00442 73 NQPHTID 79 (92)
T ss_pred CCCCCcc
Confidence 3343333
No 67
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.86 E-value=2.1e+02 Score=32.05 Aligned_cols=10 Identities=20% Similarity=0.232 Sum_probs=4.2
Q ss_pred CCCCCCCCCC
Q 008208 94 TPPPSQPSRQ 103 (574)
Q Consensus 94 ~~~~~~~~~~ 103 (574)
|++++|-|.+
T Consensus 412 p~pq~qNypp 421 (483)
T KOG2236|consen 412 PSPQQQNYPP 421 (483)
T ss_pred CCcccCCCCC
Confidence 4444444333
No 68
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.73 E-value=1.6e+02 Score=30.79 Aligned_cols=6 Identities=33% Similarity=0.224 Sum_probs=2.6
Q ss_pred hHHhHH
Q 008208 189 VLKYLL 194 (574)
Q Consensus 189 dl~~~~ 194 (574)
++++.+
T Consensus 325 nL~KaL 330 (338)
T KOG0917|consen 325 NLQKAL 330 (338)
T ss_pred HHHHHH
Confidence 444443
No 69
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=24.00 E-value=9.8e+02 Score=26.24 Aligned_cols=18 Identities=17% Similarity=0.182 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008208 196 QVEAASLLSISLSFSWQK 213 (574)
Q Consensus 196 ~i~~~~~ls~vls~iwl~ 213 (574)
....+.++++++-+++++
T Consensus 249 ~~~~a~~ig~ilV~l~~~ 266 (397)
T TIGR01129 249 AGIKAGLIGLVLVLVFMI 266 (397)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555444444
No 70
>PRK08763 single-stranded DNA-binding protein; Provisional
Probab=23.69 E-value=80 Score=30.41 Aligned_cols=18 Identities=17% Similarity=0.165 Sum_probs=10.1
Q ss_pred hhhcCcceeeeeeecCCC
Q 008208 32 DVEKGEVVVEEKVVDSNS 49 (574)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~ 49 (574)
.+.||.-|.-|--+..++
T Consensus 69 ~L~KGs~V~VeGrL~~~~ 86 (164)
T PRK08763 69 YLRKGSQCYIEGSIRYDK 86 (164)
T ss_pred hcCCCCEEEEEEEEEece
Confidence 578996554444444443
No 71
>COG3115 ZipA Cell division protein [Cell division and chromosome partitioning]
Probab=22.94 E-value=2.4e+02 Score=29.84 Aligned_cols=6 Identities=17% Similarity=-0.224 Sum_probs=2.4
Q ss_pred hhcCCC
Q 008208 69 QTLNPT 74 (574)
Q Consensus 69 ~~~~~~ 74 (574)
|++.+.
T Consensus 89 q~q~~~ 94 (324)
T COG3115 89 QYQPEY 94 (324)
T ss_pred hhcchh
Confidence 444333
No 72
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=22.72 E-value=75 Score=29.02 Aligned_cols=6 Identities=17% Similarity=0.025 Sum_probs=2.9
Q ss_pred HhhhHH
Q 008208 270 VSQRIG 275 (574)
Q Consensus 270 ~r~RI~ 275 (574)
.+||.+
T Consensus 23 ~rRR~r 28 (130)
T PF12273_consen 23 NRRRRR 28 (130)
T ss_pred HHHHhh
Confidence 345544
No 73
>KOG3828 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.56 E-value=6.5e+02 Score=27.56 Aligned_cols=9 Identities=11% Similarity=0.032 Sum_probs=4.0
Q ss_pred hhhhhhhHH
Q 008208 382 ACLGSLFVP 390 (574)
Q Consensus 382 Ic~GSLIva 390 (574)
+|++++.+.
T Consensus 287 V~l~afsl~ 295 (457)
T KOG3828|consen 287 VGLTAFSLL 295 (457)
T ss_pred hhhhHHHHH
Confidence 444444443
No 74
>PHA03211 serine/threonine kinase US3; Provisional
Probab=22.44 E-value=1.1e+02 Score=34.19 Aligned_cols=11 Identities=0% Similarity=-0.188 Sum_probs=4.7
Q ss_pred HHHHHhhccCC
Q 008208 529 CYYVCYAQNPD 539 (574)
Q Consensus 529 TifvCfaeDpe 539 (574)
-|--|...||+
T Consensus 434 li~~mL~~DP~ 444 (461)
T PHA03211 434 LVCRALTFDGA 444 (461)
T ss_pred HHHHHcccChh
Confidence 33334444444
No 75
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=22.43 E-value=19 Score=36.27 Aligned_cols=19 Identities=26% Similarity=0.143 Sum_probs=10.5
Q ss_pred cCCCCCCCchhhhhhhcCc
Q 008208 19 EGGGEGGGEEEVKDVEKGE 37 (574)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~ 37 (574)
|.|.|-+++.-.-+|.+|+
T Consensus 134 ee~t~lskd~fk~~~~~~~ 152 (286)
T KOG4451|consen 134 EEKTELSKDKFKISVAMGE 152 (286)
T ss_pred hhcCchhHHHHHHHHHHHH
Confidence 3344445555555677775
No 76
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=21.52 E-value=4.2e+02 Score=30.22 Aligned_cols=19 Identities=5% Similarity=0.043 Sum_probs=9.6
Q ss_pred hhhhhhcCCCCCcEEEEeC
Q 008208 65 ASMMQTLNPTNPLRIVING 83 (574)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~ 83 (574)
..-+|+-.+..|--++..+
T Consensus 249 ~~~~~~~~~~sp~s~ass~ 267 (705)
T KOG0639|consen 249 GRSLNKDARDSPASVASSL 267 (705)
T ss_pred chhhhcccccCcchhhhcc
Confidence 3345555555555554433
No 77
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=20.94 E-value=1.4e+02 Score=35.53 Aligned_cols=49 Identities=33% Similarity=0.498 Sum_probs=0.0
Q ss_pred CCCCcEEEEeCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 008208 73 PTNPLRIVINGGRRVTAPRIATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPTPQAS 135 (574)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (574)
|++|++=. ..|+.+||-...| +++||-+|..--+..++|||+.|.++..
T Consensus 621 PpP~~~Pg-------~np~~pPpg~~pP-------~~pPp~~Ppm~~pp~~pppp~~p~~~~~ 669 (894)
T KOG0132|consen 621 PPPPLRPG-------YNPYPPPPGFMPP-------TSPPPGQPPMGIPPQTPPPPMFPQGFNA 669 (894)
T ss_pred CCCCCCCC-------CCCCCCCcccCCC-------CCCCCCCCCCCCCCCCCCCCCCccCCCC
No 78
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=20.81 E-value=2e+02 Score=31.39 Aligned_cols=15 Identities=7% Similarity=0.306 Sum_probs=5.8
Q ss_pred chhhhhhhhhhHHHH
Q 008208 378 NLGSACLGSLFVPTI 392 (574)
Q Consensus 378 hfGSIc~GSLIvaiI 392 (574)
||+..-=++++++++
T Consensus 280 Hf~~rFGsAlLlS~I 294 (376)
T PRK13855 280 HFWQRFSGAMLLSVV 294 (376)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333444333
No 79
>PRK14849 putative lipoprotein/autotransporter domain-containing protein; Provisional
Probab=20.77 E-value=60 Score=41.90 Aligned_cols=9 Identities=11% Similarity=0.386 Sum_probs=4.5
Q ss_pred eeeeeEeee
Q 008208 352 CRVISLYYI 360 (574)
Q Consensus 352 Ag~va~WYF 360 (574)
.|+.++||-
T Consensus 1602 vG~YaTWy~ 1610 (1806)
T PRK14849 1602 AGLYATWYQ 1610 (1806)
T ss_pred EEEEEEEEc
Confidence 344555554
No 80
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.59 E-value=1.8e+02 Score=30.35 Aligned_cols=10 Identities=50% Similarity=1.029 Sum_probs=3.9
Q ss_pred CCCCCCCCCC
Q 008208 123 TSPPAPTPTP 132 (574)
Q Consensus 123 ~~~~~~~~~~ 132 (574)
+++|+|||.|
T Consensus 269 ~~~P~~qP~~ 278 (338)
T KOG0917|consen 269 TIQPTPQPIP 278 (338)
T ss_pred CCCCCCCCCC
Confidence 3334444333
No 81
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=20.45 E-value=77 Score=35.69 Aligned_cols=11 Identities=27% Similarity=0.371 Sum_probs=5.7
Q ss_pred HHHHhhchhhh
Q 008208 372 QRALTQNLGSA 382 (574)
Q Consensus 372 ~ra~tyhfGSI 382 (574)
+++++||+-+.
T Consensus 512 KqsLlhHlc~~ 522 (817)
T KOG1925|consen 512 KQSLLHHLCSL 522 (817)
T ss_pred HHHHHHHHHHH
Confidence 45555555443
No 82
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=20.28 E-value=4.2e+02 Score=26.79 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=11.7
Q ss_pred ccccccccCcccchHHHH
Q 008208 135 SRTALNSKKYTNKISLFL 152 (574)
Q Consensus 135 ~~~~y~s~~~~d~~~~~l 152 (574)
..|--+..|.--.+|+++
T Consensus 119 ~~CEen~~K~amLIClII 136 (227)
T PF05399_consen 119 EICEENNNKMAMLICLII 136 (227)
T ss_pred hhhhcCccchhHHHHHHH
Confidence 356666667777777763
Done!