Query 008208
Match_columns 574
No_of_seqs 200 out of 647
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 20:44:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008208.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008208hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kt5_B ICP27; chaperone, mRNA 49.8 37 0.0013 23.7 5.1 37 95-133 2-38 (40)
2 2dvj_A V-CRK sarcoma virus CT1 35.2 48 0.0016 31.7 5.6 18 57-74 178-195 (230)
3 1jvr_A HTLV-II MA, MA, human T 21.0 1.7E+02 0.0058 25.5 5.7 6 121-126 122-127 (137)
4 1pk8_A RAT synapsin I; ATP bin 17.8 27 0.00091 37.2 0.0 9 45-53 10-18 (422)
5 3v9r_B MHF2, uncharacterized p 16.1 23 0.0008 29.4 -0.7 28 8-35 42-71 (88)
6 1jer_A Cucumber stellacyanin; 15.9 37 0.0013 30.4 0.5 28 104-131 108-135 (138)
7 1uff_A Intersectin 2; beta bar 14.6 1.7E+02 0.0059 23.5 4.3 78 24-119 15-92 (93)
8 2h8h_A Proto-oncogene tyrosine 14.6 35 0.0012 36.6 -0.0 58 83-140 32-89 (535)
9 1jvr_A HTLV-II MA, MA, human T 14.0 3.2E+02 0.011 23.7 5.8 46 86-131 90-135 (137)
10 2dvj_A V-CRK sarcoma virus CT1 13.5 2.2E+02 0.0077 26.9 5.4 41 90-131 190-230 (230)
No 1
>2kt5_B ICP27; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Human herpesvirus 1}
Probab=49.81 E-value=37 Score=23.71 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=21.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008208 95 PPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPTPQ 133 (574)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (574)
|+.+.=+|-+.|++.+++-+++ --.+--||||.|.|-
T Consensus 2 p~~~VWsrLG~RR~~s~~E~~~--GkvAR~qpp~tka~~ 38 (40)
T 2kt5_B 2 PLGSVWSRLGARRPSCSPERHG--GKVARLQPPPTKAQP 38 (40)
T ss_dssp CCCCCCCCCSSCCCCCCCCCCC--CCSCCCCCCCCCCSC
T ss_pred CcccHHHHhcccCcCCCcCCCC--CceeeecCCCcCCCC
Confidence 3445556667777777665554 334556666666653
No 2
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A
Probab=35.23 E-value=48 Score=31.70 Aligned_cols=18 Identities=11% Similarity=0.335 Sum_probs=9.1
Q ss_pred CCCCCCcchhhhhhcCCC
Q 008208 57 NGEQRGFNASMMQTLNPT 74 (574)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~ 74 (574)
+++.+-++.+-++.+++.
T Consensus 178 ~g~~G~~P~~yv~~~~~~ 195 (230)
T 2dvj_A 178 EGKRGMIPVPYVEKYRPA 195 (230)
T ss_dssp TSCEEEEEGGGSCCCCSS
T ss_pred CCCEEEEehHHeEEcCCC
Confidence 344444555556655543
No 3
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2
Probab=20.96 E-value=1.7e+02 Score=25.50 Aligned_cols=6 Identities=33% Similarity=0.811 Sum_probs=2.2
Q ss_pred CCCCCC
Q 008208 121 ISTSPP 126 (574)
Q Consensus 121 ~~~~~~ 126 (574)
.+++||
T Consensus 122 ~~~PPP 127 (137)
T 1jvr_A 122 AHVPPP 127 (137)
T ss_dssp CSCCCC
T ss_pred ccCCCC
Confidence 333333
No 4
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=17.80 E-value=27 Score=37.19 Aligned_cols=9 Identities=44% Similarity=0.424 Sum_probs=0.0
Q ss_pred ecCCCcccc
Q 008208 45 VDSNSNVNI 53 (574)
Q Consensus 45 ~~~~~~~~~ 53 (574)
-|||-.-|.
T Consensus 10 sd~~~~~~l 18 (422)
T 1pk8_A 10 SDSNFMANL 18 (422)
T ss_dssp ---------
T ss_pred ccchhhhcC
Confidence 344444443
No 5
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=16.13 E-value=23 Score=29.36 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=0.0
Q ss_pred ccccccchhh--hcCCCCCCCchhhhhhhc
Q 008208 8 VERETQNKEE--EEGGGEGGGEEEVKDVEK 35 (574)
Q Consensus 8 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 35 (574)
|-|.-+|||. ++||++++..=|++|+|+
T Consensus 42 v~Rs~e~ke~~~~~~~~~~d~~LeveDLEk 71 (88)
T 3v9r_B 42 VLRSLQSHKDINGERGDKSPLELSHQDLER 71 (88)
T ss_dssp HHHHHHHHHCC-----------CCHHHHHH
T ss_pred HHHHHHHHHhhcccccCCCCCeeehHHHHH
No 6
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=15.92 E-value=37 Score=30.44 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008208 104 APRIATPPPSQPSRPRSISTSPPAPTPT 131 (574)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (574)
+.+.+++|+.+|+.+.+.+.+|++|+|+
T Consensus 108 ~~~~~~~~~p~~~~p~~~~~~~~~~~~~ 135 (138)
T 1jer_A 108 AANATVSMPPPSSSPPSSVMPPPVMPPP 135 (138)
T ss_dssp CCC-------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC
No 7
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=14.64 E-value=1.7e+02 Score=23.47 Aligned_cols=78 Identities=5% Similarity=0.126 Sum_probs=0.0
Q ss_pred CCCchhhhhhhcCcceeeeeeecCCCcccccCcCCCCCCcchhhhhhcCCCCCcEEEEeCcccccCCCCCCCCCCCCCCC
Q 008208 24 GGGEEEVKDVEKGEVVVEEKVVDSNSNVNINNINGEQRGFNASMMQTLNPTNPLRIVINGGRRVTAPRIATPPPSQPSRQ 103 (574)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (574)
...+++.-.+++|+.+.--+-.+.+.+--.-..+++.+-+..+.++.+.+.. .++...+.++
T Consensus 15 ~a~~~~eLsf~~Gd~i~v~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~------------------~~~~~~p~~~ 76 (93)
T 1uff_A 15 EARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSE------------------NEKAVSPKKA 76 (93)
T ss_dssp CCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECCSSS------------------SCCCCCCCCC
T ss_pred CCCCCCCcCCCCCCEEEEeEccCCCCCEEEEEECCCEEEechHHeEEcCCcc------------------ccccCCCCCC
Q ss_pred CCCCCCCCCCCCCCCC
Q 008208 104 APRIATPPPSQPSRPR 119 (574)
Q Consensus 104 ~~~~~~~~~~~~~~~~ 119 (574)
.+.++.++|++++|+.
T Consensus 77 ~~pp~~~~p~~~~p~s 92 (93)
T 1uff_A 77 LLPPTVSLSATSGPSS 92 (93)
T ss_dssp CCCCCCCCCCCCCCCC
T ss_pred CCCCCCCCCCCCCCCC
No 8
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=14.60 E-value=35 Score=36.61 Aligned_cols=58 Identities=12% Similarity=0.045 Sum_probs=0.0
Q ss_pred CcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 008208 83 GGRRVTAPRIATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPTPQASRTALN 140 (574)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 140 (574)
......+.|++++..+++..+++..++.|++...+....++++|++++++......+.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (535)
T 2h8h_A 32 PASQTPSKPASADGHRGPSAAFAPAAAEPKLFGGFNSSDTVTSPQRAGPLAGGVTTFV 89 (535)
T ss_dssp -------------------------------------------------------CEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEE
No 9
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2
Probab=14.01 E-value=3.2e+02 Score=23.74 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=0.0
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008208 86 RVTAPRIATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPT 131 (574)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (574)
+-...+++|+.++.+.-++++..+++..++.-++-+++|.-|..+.
T Consensus 90 ~~~~~~~~p~ap~~~p~~p~~~~p~~aP~~~~~~~PPPY~ep~a~q 135 (137)
T 1jvr_A 90 KNQVSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEPTTTQ 135 (137)
T ss_dssp TTTCCCCCSCSSSSSCSSCCCCSCCCCCSSSCCSCCCCCCCSSCCC
T ss_pred HhcCCCCCccccccCCCCCcccCCCCCCCcccccCCCCCCCccccc
No 10
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A
Probab=13.50 E-value=2.2e+02 Score=26.87 Aligned_cols=41 Identities=10% Similarity=0.055 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008208 90 PRIATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPT 131 (574)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (574)
...++.+.+.+..++.....+.++++..| ++++|+.|+.++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~p~~~~~P~~~~ 230 (230)
T 2dvj_A 190 EKYRPASASVSALIGGNQEGSHPQPLGGP-EPGPYAQPSVNT 230 (230)
T ss_dssp CCCCSSCCCSCCSTTSCCCCSSSCSSCCC-CCSCCCCSCSCC
T ss_pred EEcCCCCcCcCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC
Done!