Query 008208
Match_columns 574
No_of_seqs 200 out of 647
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 20:44:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008208.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008208hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jvra_ a.61.1.2 (A:) HTLV-II 37.1 11 0.00082 31.2 3.3 13 114-126 115-127 (137)
2 d1uffa_ b.34.2.1 (A:) Intersec 23.1 35 0.0026 25.7 3.9 42 31-73 22-64 (93)
3 d2j01h2 d.141.1.1 (H:83-171) R 10.9 45 0.0033 25.7 1.5 33 45-77 43-75 (89)
4 d1t0ga_ d.120.1.2 (A:) Putativ 9.2 74 0.0054 25.3 2.3 32 54-85 3-37 (109)
5 d1rw1a_ c.47.1.12 (A:) Hypothe 8.8 69 0.005 25.0 2.0 28 439-466 3-30 (114)
6 d1z3ea1 c.47.1.12 (A:1-114) Re 8.5 59 0.0043 25.5 1.4 26 438-463 2-27 (114)
7 d2gqba1 a.282.1.1 (A:1-130) Hy 8.4 1.4E+02 0.01 24.2 3.8 35 98-132 14-48 (130)
8 d1j9ba_ c.47.1.12 (A:) Arsenat 6.6 1.3E+02 0.0091 24.4 2.7 25 439-463 3-27 (138)
9 d1nm3a1 c.47.1.1 (A:166-239) C 6.3 88 0.0064 22.1 1.4 24 439-462 8-31 (74)
10 d1pq1a_ f.1.4.1 (A:) Apoptosis 6.0 60 0.0044 28.5 0.2 51 82-132 30-83 (196)
No 1
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia virus type 2 [TaxId: 11909]}
Probab=37.09 E-value=11 Score=31.17 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=5.9
Q ss_pred CCCCCCCCCCCCC
Q 008208 114 QPSRPRSISTSPP 126 (574)
Q Consensus 114 ~~~~~~~~~~~~~ 126 (574)
++.++.|.+++||
T Consensus 115 ~~p~~~ephiPPP 127 (137)
T d1jvra_ 115 PPPPSPEAHVPPP 127 (137)
T ss_dssp CCCSSSCCSCCCC
T ss_pred CCCCCcccCCCCC
Confidence 3334445555543
No 2
>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.05 E-value=35 Score=25.73 Aligned_cols=42 Identities=17% Similarity=0.348 Sum_probs=21.5
Q ss_pred hhhhcCcce-eeeeeecCCCcccccCcCCCCCCcchhhhhhcCC
Q 008208 31 KDVEKGEVV-VEEKVVDSNSNVNINNINGEQRGFNASMMQTLNP 73 (574)
Q Consensus 31 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (574)
=.+++|+.+ |.|+.. .+.+.-....+++..=++.+.+|.+.+
T Consensus 22 Ls~~~Gd~v~Vl~~~~-~~~~w~~~~~~g~~G~~P~~Yve~~~~ 64 (93)
T d1uffa_ 22 MSFNSGDIIQVDEKTV-GEPGWLYGSFQGNFGWFPCNYVEKMPS 64 (93)
T ss_dssp CCBCTTCEEEECSSCC-CSSSEEEEEETTEEEEEETTTEEECCS
T ss_pred ccCcCCCEEEEEEecc-CCCCEEEEEeCCcEEEEchHHEEECCC
Confidence 356778643 233322 223333344566666666776765543
No 3
>d2j01h2 d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]}
Probab=10.85 E-value=45 Score=25.69 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=29.7
Q ss_pred ecCCCcccccCcCCCCCCcchhhhhhcCCCCCc
Q 008208 45 VDSNSNVNINNINGEQRGFNASMMQTLNPTNPL 77 (574)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (574)
++.+..+.+.+.+-|.-|.-++.+..++|.+|-
T Consensus 43 ~~~~t~i~i~g~dK~~vg~~aa~IR~~r~pepY 75 (89)
T d2j01h2 43 VPEPTRVRVSGIDKQKVGQVAANIRAIRKPSAY 75 (89)
T ss_dssp CSSSSCEEEEESCSTTTTHHHHHHHTTSCSCSS
T ss_pred ecCCCEEEEEeCCHHHHHHHHHHHhccCCCCCc
Confidence 566777999999999999999999999999984
No 4
>d1t0ga_ d.120.1.2 (A:) Putative steroid binding protein AT2G24940 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=9.23 E-value=74 Score=25.27 Aligned_cols=32 Identities=16% Similarity=0.363 Sum_probs=25.7
Q ss_pred cCcCCCCCCcchhhhhhc---CCCCCcEEEEeCcc
Q 008208 54 NNINGEQRGFNASMMQTL---NPTNPLRIVINGGR 85 (574)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 85 (574)
|++|.+.+.++...|.+- |+++|+=|+++|--
T Consensus 3 ~~~~~~~~~fT~eeL~~ydG~~~~~piyvAi~G~V 37 (109)
T d1t0ga_ 3 HHHHHHLEEFTAEQLSQYNGTDESKPIYVAIKGRV 37 (109)
T ss_dssp CCCCSSSEEEEHHHHTTCSSCSSSCCCEEEETTEE
T ss_pred chhhhhhhhCCHHHHHHcCCCCCCccEEEEECCEE
Confidence 677788888888888877 56678999999853
No 5
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=8.78 E-value=69 Score=25.00 Aligned_cols=28 Identities=7% Similarity=0.139 Sum_probs=23.9
Q ss_pred hccCCchhHhHHHHHHHHHhcCccceec
Q 008208 439 AAYGKGFVQASQDTWALFERQEMEPIVD 466 (574)
Q Consensus 439 AI~G~~F~~SAk~a~~L~~~n~~~~lv~ 466 (574)
-|||.+=|.++|+|.++++.++.+.-+.
T Consensus 3 ~iY~~p~Cs~srka~~~L~~~~i~~~~i 30 (114)
T d1rw1a_ 3 VLYGIKACDTMKKARTWLDEHKVAYDFH 30 (114)
T ss_dssp EEEECSSCHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCChHHHHHHHHHHHcCCCeEEE
Confidence 4799999999999999999999875333
No 6
>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}
Probab=8.48 E-value=59 Score=25.51 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=23.2
Q ss_pred HhccCCchhHhHHHHHHHHHhcCccc
Q 008208 438 IAAYGKGFVQASQDTWALFERQEMEP 463 (574)
Q Consensus 438 iAI~G~~F~~SAk~a~~L~~~n~~~~ 463 (574)
+-+||.+=|.++|+|.+.++.++.+.
T Consensus 2 i~ly~~~~C~~~rka~~~L~~~~i~~ 27 (114)
T d1z3ea1 2 VTLYTSPSCTSCRKARAWLEEHEIPF 27 (114)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCE
T ss_pred EEEEcCCCCHHHHHHHHHHHHCCCCe
Confidence 45899999999999999999999874
No 7
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=8.43 E-value=1.4e+02 Score=24.23 Aligned_cols=35 Identities=9% Similarity=0.175 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008208 98 SQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPTP 132 (574)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (574)
....-++.+.++|++.++.+..+.++.++++++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~VD 48 (130)
T d2gqba1 14 DSAAASPGGAQAPATTGAAGTAPTAPQPTAAPSID 48 (130)
T ss_dssp CCSSCTTTTCCCCCCCSSCCCSCCCCCCCCCSSEE
T ss_pred CccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
No 8
>d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli [TaxId: 562]}
Probab=6.63 E-value=1.3e+02 Score=24.39 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=22.7
Q ss_pred hccCCchhHhHHHHHHHHHhcCccc
Q 008208 439 AAYGKGFVQASQDTWALFERQEMEP 463 (574)
Q Consensus 439 AI~G~~F~~SAk~a~~L~~~n~~~~ 463 (574)
-+|+.+=|..+|+|.++++.++...
T Consensus 3 ~iY~~p~Cs~srkal~~L~~~~i~~ 27 (138)
T d1j9ba_ 3 TIYHNPACGTSRNTLEMIRNSGTEP 27 (138)
T ss_dssp EEECCTTCHHHHHHHHHHHHTTCCC
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCe
Confidence 4799999999999999999999874
No 9
>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}
Probab=6.35 E-value=88 Score=22.07 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=16.9
Q ss_pred hccCCchhHhHHHHHHHHHhcCcc
Q 008208 439 AAYGKGFVQASQDTWALFERQEME 462 (574)
Q Consensus 439 AI~G~~F~~SAk~a~~L~~~n~~~ 462 (574)
-||+++.|.=+++|-+|+.+++..
T Consensus 8 ~iYs~~~C~~C~~ak~lL~~~~i~ 31 (74)
T d1nm3a1 8 SIFTKPGCPFCAKAKQLLHDKGLS 31 (74)
T ss_dssp EEEECSSCHHHHHHHHHHHHHTCC
T ss_pred EEEECCCCHHHHHHHHHHHHcCCC
Confidence 466677777777777788887764
No 10
>d1pq1a_ f.1.4.1 (A:) Apoptosis regulator Bcl-xL {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.04 E-value=60 Score=28.48 Aligned_cols=51 Identities=14% Similarity=0.069 Sum_probs=0.0
Q ss_pred eCcccccCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008208 82 NGGRRVTAPRI---ATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPTP 132 (574)
Q Consensus 82 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (574)
+++.+.++|+. .+.+.+-+..+++..++++|.++....+.++.+..|.+++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (196)
T d1pq1a_ 30 VEENRTEAPEETEAERETPSAINGNPSWHLADSPAVNGATGHSSSLDAREVIPM 83 (196)
T ss_dssp ------------------------------------------------CCSCCH
T ss_pred cccccccCCCCCcccccCCCCCCCCCccCCCCCCCCccccccccccccCCCCch
Done!