Query 008209
Match_columns 574
No_of_seqs 349 out of 2445
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 20:53:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008209.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008209hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0922 DEAH-box RNA helicase 100.0 3E-133 5E-138 1046.4 47.2 531 4-548 136-670 (674)
2 KOG0925 mRNA splicing factor A 100.0 6E-133 1E-137 999.6 46.7 551 3-560 131-682 (699)
3 KOG0924 mRNA splicing factor A 100.0 5E-130 1E-134 1008.8 38.4 531 6-548 443-976 (1042)
4 KOG0923 mRNA splicing factor A 100.0 2E-128 3E-133 997.5 42.7 533 8-551 355-889 (902)
5 PRK11131 ATP-dependent RNA hel 100.0 4E-109 9E-114 942.2 47.0 537 5-563 160-716 (1294)
6 TIGR01967 DEAH_box_HrpA ATP-de 100.0 5E-106 1E-110 920.6 45.7 540 4-565 152-708 (1283)
7 COG1643 HrpA HrpA-like helicas 100.0 5E-103 1E-107 865.1 40.2 524 4-541 135-707 (845)
8 KOG0926 DEAH-box RNA helicase 100.0 1E-100 3E-105 802.0 35.1 535 6-547 347-1025(1172)
9 KOG0920 ATP-dependent RNA heli 100.0 2.2E-97 5E-102 815.6 35.1 529 6-544 262-848 (924)
10 TIGR01970 DEAH_box_HrpB ATP-de 100.0 6.1E-87 1.3E-91 749.0 40.4 494 6-555 88-588 (819)
11 PRK11664 ATP-dependent RNA hel 100.0 3.4E-86 7.4E-91 744.7 39.5 483 6-553 91-579 (812)
12 KOG0921 Dosage compensation co 100.0 1.6E-56 3.5E-61 474.8 18.4 524 9-545 473-1073(1282)
13 PHA02653 RNA helicase NPH-II; 100.0 1E-50 2.2E-55 446.4 27.5 306 9-357 275-594 (675)
14 PRK01172 ski2-like helicase; P 100.0 1.9E-33 4.2E-38 317.3 29.1 327 8-360 111-494 (674)
15 PRK02362 ski2-like helicase; P 100.0 5.9E-32 1.3E-36 307.4 29.0 328 8-358 113-514 (737)
16 PRK00254 ski2-like helicase; P 100.0 5.2E-29 1.1E-33 282.7 27.5 322 8-357 114-504 (720)
17 KOG0331 ATP-dependent RNA heli 100.0 2.5E-29 5.5E-34 263.5 18.8 226 7-268 214-450 (519)
18 KOG0330 ATP-dependent RNA heli 100.0 8.1E-30 1.8E-34 251.6 11.6 225 5-268 176-409 (476)
19 PRK11776 ATP-dependent RNA hel 100.0 1.4E-28 3E-33 266.3 18.7 221 8-268 123-351 (460)
20 COG1202 Superfamily II helicas 100.0 3.5E-28 7.6E-33 249.9 18.8 334 5-380 312-687 (830)
21 PTZ00110 helicase; Provisional 100.0 3.4E-28 7.3E-33 266.8 19.0 224 8-268 253-486 (545)
22 COG0513 SrmB Superfamily II DN 100.0 1.3E-27 2.7E-32 259.9 18.8 221 8-266 150-380 (513)
23 PRK10590 ATP-dependent RNA hel 99.9 4.3E-27 9.4E-32 253.9 19.9 221 8-268 125-354 (456)
24 PLN00206 DEAD-box ATP-dependen 99.9 5E-27 1.1E-31 256.7 19.8 222 8-268 246-477 (518)
25 PRK11634 ATP-dependent RNA hel 99.9 1E-26 2.3E-31 257.5 20.6 221 8-267 125-353 (629)
26 PRK11192 ATP-dependent RNA hel 99.9 6.9E-27 1.5E-31 251.4 18.4 223 8-268 123-354 (434)
27 PRK04837 ATP-dependent RNA hel 99.9 9.5E-27 2.1E-31 249.3 18.5 221 8-268 133-364 (423)
28 TIGR03817 DECH_helic helicase/ 99.9 3.4E-26 7.3E-31 258.2 22.9 230 8-265 129-385 (742)
29 PRK04537 ATP-dependent RNA hel 99.9 2E-26 4.4E-31 253.7 20.1 221 8-268 134-366 (572)
30 PRK01297 ATP-dependent RNA hel 99.9 2.2E-26 4.7E-31 249.9 19.2 221 8-268 213-444 (475)
31 PTZ00424 helicase 45; Provisio 99.9 1.4E-26 3.1E-31 246.6 16.8 222 8-268 146-376 (401)
32 KOG0333 U5 snRNP-like RNA heli 99.9 1.9E-26 4.2E-31 235.1 15.6 226 3-267 367-625 (673)
33 COG1204 Superfamily II helicas 99.9 5E-25 1.1E-29 246.4 26.2 329 8-358 122-526 (766)
34 TIGR00614 recQ_fam ATP-depende 99.9 4.3E-25 9.3E-30 239.1 21.8 223 8-268 101-335 (470)
35 KOG0328 Predicted ATP-dependen 99.9 1.5E-25 3.2E-30 212.8 15.5 222 8-268 145-375 (400)
36 PLN03137 ATP-dependent DNA hel 99.9 4E-25 8.8E-30 248.8 19.5 223 8-268 552-789 (1195)
37 KOG0345 ATP-dependent RNA heli 99.9 1.7E-25 3.6E-30 225.9 14.5 241 8-285 131-385 (567)
38 KOG0342 ATP-dependent RNA heli 99.9 7.6E-25 1.6E-29 222.7 19.3 223 8-268 205-439 (543)
39 PRK11057 ATP-dependent DNA hel 99.9 6.1E-25 1.3E-29 244.3 19.9 222 8-268 115-345 (607)
40 KOG0336 ATP-dependent RNA heli 99.9 5.2E-25 1.1E-29 218.4 14.6 223 7-268 342-574 (629)
41 PRK09751 putative ATP-dependen 99.9 2.3E-24 5E-29 252.1 21.4 222 8-258 99-375 (1490)
42 KOG0343 RNA Helicase [RNA proc 99.9 2.6E-24 5.7E-29 220.6 15.4 223 9-268 191-424 (758)
43 PRK13767 ATP-dependent helicas 99.9 3.9E-24 8.5E-29 246.0 18.5 223 8-262 146-396 (876)
44 TIGR01389 recQ ATP-dependent D 99.9 8.1E-24 1.7E-28 235.7 18.3 222 8-268 103-333 (591)
45 KOG0339 ATP-dependent RNA heli 99.9 7.5E-24 1.6E-28 215.2 15.8 224 7-268 345-577 (731)
46 KOG0338 ATP-dependent RNA heli 99.9 8.4E-24 1.8E-28 215.2 14.5 222 8-268 302-535 (691)
47 KOG0952 DNA/RNA helicase MER3/ 99.9 6.4E-23 1.4E-27 223.9 21.6 385 8-411 211-683 (1230)
48 KOG0340 ATP-dependent RNA heli 99.9 1.6E-23 3.6E-28 204.9 14.6 224 6-268 123-363 (442)
49 KOG0326 ATP-dependent RNA heli 99.9 1.7E-23 3.8E-28 201.8 13.0 221 8-267 203-430 (459)
50 TIGR02621 cas3_GSU0051 CRISPR- 99.9 3.4E-22 7.5E-27 222.2 21.8 265 8-305 135-430 (844)
51 KOG0335 ATP-dependent RNA heli 99.9 3.6E-23 7.8E-28 213.8 13.0 224 7-265 201-443 (482)
52 KOG0332 ATP-dependent RNA heli 99.9 4.2E-23 9E-28 203.2 12.4 227 9-267 208-444 (477)
53 KOG0348 ATP-dependent RNA heli 99.9 1.5E-22 3.3E-27 207.1 13.8 243 7-274 261-564 (708)
54 TIGR00580 mfd transcription-re 99.9 7.6E-22 1.6E-26 225.3 19.5 211 9-266 555-770 (926)
55 PRK10689 transcription-repair 99.9 7.8E-22 1.7E-26 229.8 18.6 211 8-265 703-918 (1147)
56 KOG0341 DEAD-box protein abstr 99.9 1E-22 2.2E-27 200.9 7.9 225 5-268 299-530 (610)
57 TIGR01587 cas3_core CRISPR-ass 99.9 2.1E-21 4.6E-26 203.7 18.4 219 8-267 94-337 (358)
58 PRK10917 ATP-dependent DNA hel 99.9 5.3E-21 1.1E-25 215.2 19.9 211 8-264 364-587 (681)
59 TIGR03158 cas3_cyano CRISPR-as 99.9 1.7E-20 3.7E-25 195.9 22.1 204 8-252 113-357 (357)
60 KOG0951 RNA helicase BRR2, DEA 99.9 3.5E-21 7.6E-26 212.7 17.1 352 8-379 411-850 (1674)
61 COG1201 Lhr Lhr-like helicases 99.9 3.8E-21 8.2E-26 212.8 17.4 276 8-323 123-438 (814)
62 TIGR00643 recG ATP-dependent D 99.9 8.1E-21 1.8E-25 212.2 18.1 213 9-264 339-564 (630)
63 KOG0347 RNA helicase [RNA proc 99.8 7.1E-22 1.5E-26 202.8 5.1 221 8-267 313-571 (731)
64 COG1111 MPH1 ERCC4-like helica 99.8 8.4E-20 1.8E-24 187.5 19.0 228 8-266 107-481 (542)
65 KOG0346 RNA helicase [RNA proc 99.8 5.7E-20 1.2E-24 184.6 15.9 219 8-268 145-412 (569)
66 KOG4284 DEAD box protein [Tran 99.8 5.6E-20 1.2E-24 191.7 15.1 224 8-266 143-379 (980)
67 COG0514 RecQ Superfamily II DN 99.8 6.3E-20 1.4E-24 196.4 15.7 223 9-268 108-339 (590)
68 KOG0350 DEAD-box ATP-dependent 99.8 2.7E-20 5.9E-25 189.5 10.9 225 9-268 271-542 (620)
69 KOG0327 Translation initiation 99.8 1.2E-19 2.6E-24 180.4 13.9 217 9-268 146-372 (397)
70 PF07717 OB_NTP_bind: Oligonuc 99.8 4.9E-20 1.1E-24 160.6 8.6 104 440-543 1-114 (114)
71 KOG0334 RNA helicase [RNA proc 99.8 1.8E-19 3.8E-24 198.9 13.6 223 7-267 487-721 (997)
72 KOG0344 ATP-dependent RNA heli 99.8 4.2E-19 9.1E-24 185.0 12.6 223 9-268 263-497 (593)
73 KOG0948 Nuclear exosomal RNA h 99.8 1.7E-19 3.7E-24 190.9 9.6 236 8-266 211-539 (1041)
74 PRK13766 Hef nuclease; Provisi 99.8 1.2E-17 2.7E-22 192.2 19.7 112 124-269 363-482 (773)
75 PF04408 HA2: Helicase associa 99.8 6.8E-19 1.5E-23 149.8 6.8 91 316-406 1-102 (102)
76 KOG0947 Cytoplasmic exosomal R 99.8 3.2E-18 7E-23 185.5 12.8 237 6-266 377-723 (1248)
77 PRK09694 helicase Cas3; Provis 99.8 1.7E-17 3.7E-22 188.0 18.3 213 9-255 411-663 (878)
78 PHA02558 uvsW UvsW helicase; P 99.7 4.4E-17 9.6E-22 177.7 17.2 208 8-258 201-443 (501)
79 COG4581 Superfamily II RNA hel 99.7 2.1E-17 4.5E-22 185.8 14.4 238 7-267 204-538 (1041)
80 COG1205 Distinct helicase fami 99.7 3.6E-17 7.9E-22 185.9 15.6 227 8-263 167-419 (851)
81 KOG0950 DNA polymerase theta/e 99.7 7.4E-17 1.6E-21 176.3 14.6 236 9-268 316-613 (1008)
82 KOG0354 DEAD-box like helicase 99.7 2E-16 4.4E-21 171.6 17.0 115 124-266 411-529 (746)
83 smart00847 HA2 Helicase associ 99.7 5.9E-17 1.3E-21 135.4 7.3 90 316-406 1-92 (92)
84 KOG0351 ATP-dependent DNA heli 99.7 2.4E-16 5.3E-21 178.2 14.4 223 9-268 357-594 (941)
85 KOG0337 ATP-dependent RNA heli 99.7 1.8E-16 4E-21 158.8 10.3 221 8-268 140-370 (529)
86 KOG0349 Putative DEAD-box RNA 99.7 3.6E-16 7.9E-21 156.7 11.1 225 8-264 339-613 (725)
87 PRK12898 secA preprotein trans 99.6 1.4E-15 3.1E-20 166.2 15.4 164 65-267 410-587 (656)
88 COG4098 comFA Superfamily II D 99.6 1E-14 2.2E-19 143.2 18.9 211 9-260 186-410 (441)
89 PRK09401 reverse gyrase; Revie 99.6 1.2E-15 2.5E-20 178.8 14.7 203 8-251 179-428 (1176)
90 TIGR00603 rad25 DNA repair hel 99.6 6.9E-15 1.5E-19 162.7 17.5 215 9-269 344-610 (732)
91 COG1197 Mfd Transcription-repa 99.6 7.3E-15 1.6E-19 165.7 17.7 214 8-268 697-915 (1139)
92 COG1200 RecG RecG-like helicas 99.6 5.3E-15 1.1E-19 158.6 15.7 214 8-267 365-592 (677)
93 TIGR00595 priA primosomal prot 99.6 5.3E-15 1.1E-19 160.6 14.7 219 9-260 77-375 (505)
94 PRK14701 reverse gyrase; Provi 99.6 6.6E-15 1.4E-19 176.2 14.3 221 9-263 179-453 (1638)
95 PRK09200 preprotein translocas 99.6 2.1E-14 4.5E-19 160.4 15.6 162 65-268 365-543 (790)
96 KOG0352 ATP-dependent DNA heli 99.6 7.5E-15 1.6E-19 147.4 10.5 225 6-268 111-364 (641)
97 KOG0921 Dosage compensation co 99.6 1E-15 2.3E-20 165.0 4.5 349 11-380 503-897 (1282)
98 PRK05580 primosome assembly pr 99.6 5.1E-14 1.1E-18 158.3 16.5 222 9-261 242-544 (679)
99 TIGR01054 rgy reverse gyrase. 99.6 5.5E-14 1.2E-18 165.1 17.0 188 8-224 178-412 (1171)
100 TIGR03714 secA2 accessory Sec 99.5 6.9E-14 1.5E-18 154.9 15.7 161 65-268 361-539 (762)
101 TIGR00963 secA preprotein tran 99.5 1.4E-13 3E-18 151.6 16.9 162 65-268 342-519 (745)
102 TIGR00631 uvrb excinuclease AB 99.5 1.1E-13 2.3E-18 154.1 14.9 115 124-267 440-554 (655)
103 cd00079 HELICc Helicase superf 99.5 1.6E-13 3.5E-18 121.8 10.6 103 125-261 27-130 (131)
104 PRK05298 excinuclease ABC subu 99.5 5.3E-13 1.1E-17 149.5 15.8 113 124-265 444-556 (652)
105 PRK12906 secA preprotein trans 99.5 5.3E-13 1.2E-17 148.2 15.0 161 65-267 377-554 (796)
106 KOG0353 ATP-dependent DNA heli 99.5 8.5E-13 1.9E-17 130.7 14.7 218 9-266 187-467 (695)
107 PRK11448 hsdR type I restricti 99.5 2.8E-12 6E-17 149.9 21.0 228 8-265 511-814 (1123)
108 COG1203 CRISPR-associated heli 99.4 5.3E-13 1.1E-17 151.5 12.8 193 31-264 338-548 (733)
109 KOG0329 ATP-dependent RNA heli 99.4 1.8E-13 4E-18 129.1 5.9 187 8-268 161-357 (387)
110 PF00271 Helicase_C: Helicase 99.4 2.3E-13 5.1E-18 109.8 5.2 73 158-255 6-78 (78)
111 PRK12900 secA preprotein trans 99.4 1.7E-12 3.7E-17 145.2 12.4 162 65-268 535-713 (1025)
112 PRK04914 ATP-dependent helicas 99.3 1.2E-11 2.5E-16 141.8 10.7 119 116-265 483-604 (956)
113 COG1061 SSL2 DNA or RNA helica 99.3 8.7E-11 1.9E-15 126.1 16.5 206 10-257 124-379 (442)
114 smart00490 HELICc helicase sup 99.2 1.1E-11 2.3E-16 100.3 5.4 73 158-255 10-82 (82)
115 KOG4150 Predicted ATP-dependen 99.2 5.7E-11 1.2E-15 123.3 11.9 221 8-256 384-629 (1034)
116 PRK13104 secA preprotein trans 99.1 9.3E-10 2E-14 123.4 14.6 178 65-266 381-587 (896)
117 TIGR02562 cas3_yersinia CRISPR 99.1 4E-09 8.6E-14 119.2 18.1 225 8-257 562-882 (1110)
118 PRK12904 preprotein translocas 99.1 1.3E-09 2.8E-14 122.0 13.8 178 65-266 367-573 (830)
119 PRK13107 preprotein translocas 99.0 2.4E-09 5.1E-14 119.9 15.0 168 65-267 386-592 (908)
120 KOG0949 Predicted helicase, DE 99.0 6.4E-09 1.4E-13 114.5 15.5 76 162-261 965-1043(1330)
121 PLN03142 Probable chromatin-re 98.9 2E-08 4.3E-13 116.1 17.5 115 125-270 486-603 (1033)
122 KOG0953 Mitochondrial RNA heli 98.9 1.4E-08 3E-13 106.1 11.1 116 124-266 355-477 (700)
123 COG4096 HsdR Type I site-speci 98.7 2.7E-07 5.9E-12 101.4 15.4 211 6-256 254-527 (875)
124 TIGR01407 dinG_rel DnaQ family 98.6 1.3E-06 2.7E-11 101.8 19.9 179 65-262 597-811 (850)
125 COG0556 UvrB Helicase subunit 98.6 5.9E-07 1.3E-11 94.0 14.2 164 63-262 386-553 (663)
126 PRK12903 secA preprotein trans 98.6 7.6E-07 1.6E-11 99.3 15.1 158 65-264 363-537 (925)
127 COG1198 PriA Primosomal protei 98.6 4.6E-07 9.9E-12 101.0 12.8 202 29-261 311-598 (730)
128 PRK12326 preprotein translocas 98.5 1.3E-06 2.8E-11 96.2 15.1 161 65-267 364-548 (764)
129 TIGR00348 hsdR type I site-spe 98.4 8.4E-06 1.8E-10 92.2 18.2 104 126-258 514-639 (667)
130 PRK12899 secA preprotein trans 98.4 5.5E-06 1.2E-10 93.6 14.7 161 65-267 505-682 (970)
131 PRK12901 secA preprotein trans 98.3 5.7E-06 1.2E-10 93.8 12.6 159 65-265 565-740 (1112)
132 KOG0385 Chromatin remodeling c 98.3 2.8E-05 6.1E-10 84.7 16.9 119 124-270 485-603 (971)
133 PRK13103 secA preprotein trans 98.2 8.6E-06 1.9E-10 91.9 12.7 167 65-266 386-591 (913)
134 PF00270 DEAD: DEAD/DEAH box h 98.2 2.8E-06 6.1E-11 78.7 6.0 71 8-79 95-167 (169)
135 PRK07246 bifunctional ATP-depe 98.1 0.00019 4.2E-09 82.9 20.4 132 107-262 630-780 (820)
136 CHL00122 secA preprotein trans 98.1 9.3E-05 2E-09 83.4 16.0 121 65-209 361-491 (870)
137 KOG0387 Transcription-coupled 98.0 0.00011 2.4E-09 80.5 15.4 175 125-344 545-719 (923)
138 KOG1123 RNA polymerase II tran 97.9 4.3E-05 9.3E-10 79.5 9.6 118 113-268 531-655 (776)
139 KOG0951 RNA helicase BRR2, DEA 97.9 9.4E-05 2E-09 84.5 11.9 227 9-264 1235-1492(1674)
140 PF07652 Flavi_DEAD: Flaviviru 97.9 5.5E-05 1.2E-09 67.2 8.0 69 5-74 69-137 (148)
141 COG1110 Reverse gyrase [DNA re 97.9 0.00037 8E-09 78.7 15.9 183 8-224 181-420 (1187)
142 cd00268 DEADc DEAD-box helicas 97.8 6E-05 1.3E-09 72.2 7.6 65 8-74 119-185 (203)
143 PRK12902 secA preprotein trans 97.7 0.00045 9.8E-09 78.0 13.5 121 65-209 376-506 (939)
144 KOG1000 Chromatin remodeling p 97.6 0.00093 2E-08 69.8 13.3 167 124-358 490-657 (689)
145 PF06862 DUF1253: Protein of u 97.3 0.011 2.3E-07 62.9 17.5 230 8-268 131-417 (442)
146 PRK14873 primosome assembly pr 97.3 0.005 1.1E-07 69.3 15.9 49 29-80 255-310 (665)
147 smart00487 DEXDc DEAD-like hel 97.3 0.0008 1.7E-08 63.1 7.7 71 10-83 107-183 (201)
148 PRK08074 bifunctional ATP-depe 97.3 0.0032 6.9E-08 74.2 14.1 138 107-262 734-890 (928)
149 COG0653 SecA Preprotein transl 97.2 0.00098 2.1E-08 74.9 8.4 121 107-259 412-538 (822)
150 cd00046 DEXDc DEAD-like helica 97.2 0.00086 1.9E-08 59.0 6.2 66 7-73 78-144 (144)
151 KOG0390 DNA repair protein, SN 97.0 0.033 7.1E-07 62.8 18.4 93 158-269 618-710 (776)
152 PRK11747 dinG ATP-dependent DN 97.0 0.0082 1.8E-07 68.5 13.7 176 65-262 458-671 (697)
153 COG1199 DinG Rad3-related DNA 96.9 0.0077 1.7E-07 68.6 12.0 181 63-262 403-614 (654)
154 KOG0391 SNF2 family DNA-depend 96.8 0.0058 1.2E-07 69.9 10.1 120 124-272 1274-1393(1958)
155 PF02399 Herpes_ori_bp: Origin 96.8 0.017 3.7E-07 64.9 13.6 109 124-266 280-388 (824)
156 TIGR00604 rad3 DNA repair heli 96.6 0.01 2.2E-07 68.0 10.7 189 65-262 443-671 (705)
157 KOG0384 Chromodomain-helicase 96.1 0.027 5.8E-07 65.2 9.6 140 124-294 697-836 (1373)
158 KOG0392 SNF2 family DNA-depend 96.0 0.023 4.9E-07 65.7 8.9 119 126-270 1340-1458(1549)
159 PF13307 Helicase_C_2: Helicas 95.5 0.01 2.2E-07 55.2 2.9 123 124-262 7-145 (167)
160 KOG0388 SNF2 family DNA-depend 95.3 0.087 1.9E-06 57.8 9.5 119 124-272 1042-1160(1185)
161 PF04851 ResIII: Type III rest 95.1 0.036 7.9E-07 51.5 5.6 60 8-73 111-182 (184)
162 TIGR03117 cas_csf4 CRISPR-asso 95.0 0.51 1.1E-05 52.9 15.0 83 109-208 454-538 (636)
163 KOG0389 SNF2 family DNA-depend 94.5 0.21 4.6E-06 55.6 9.8 118 125-271 776-893 (941)
164 COG0553 HepA Superfamily II DN 93.2 0.23 4.9E-06 58.4 8.0 114 128-270 713-826 (866)
165 COG4889 Predicted helicase [Ge 92.3 0.073 1.6E-06 59.8 2.0 108 128-260 462-578 (1518)
166 TIGR00596 rad1 DNA repair prot 89.5 0.89 1.9E-05 52.6 7.4 64 8-73 7-72 (814)
167 PRK05580 primosome assembly pr 89.0 0.59 1.3E-05 53.3 5.6 75 125-215 189-263 (679)
168 PRK14873 primosome assembly pr 88.8 0.89 1.9E-05 51.5 6.7 76 125-215 187-262 (665)
169 PRK10917 ATP-dependent DNA hel 88.4 1.4 3E-05 50.5 8.1 79 125-215 309-388 (681)
170 KOG0952 DNA/RNA helicase MER3/ 88.4 0.18 3.9E-06 57.9 0.8 135 8-144 1020-1171(1230)
171 TIGR00595 priA primosomal prot 87.5 0.78 1.7E-05 50.4 5.1 75 125-215 24-98 (505)
172 COG1110 Reverse gyrase [DNA re 87.0 1.7 3.8E-05 50.2 7.5 76 117-202 116-191 (1187)
173 KOG2340 Uncharacterized conser 86.8 1.7 3.8E-05 46.6 6.9 111 125-268 551-670 (698)
174 PF13872 AAA_34: P-loop contai 86.8 1.1 2.4E-05 45.2 5.3 66 7-73 135-220 (303)
175 TIGR00596 rad1 DNA repair prot 86.5 1.1 2.4E-05 51.8 5.8 25 124-148 293-317 (814)
176 KOG0347 RNA helicase [RNA proc 85.1 1.5 3.3E-05 47.3 5.4 57 128-200 265-321 (731)
177 PRK11634 ATP-dependent RNA hel 84.2 7.9 0.00017 43.9 11.2 76 125-215 73-154 (629)
178 TIGR00580 mfd transcription-re 84.2 2.5 5.4E-05 49.9 7.3 79 125-215 499-578 (926)
179 COG0513 SrmB Superfamily II DN 83.8 4.4 9.6E-05 44.7 8.8 72 129-215 102-179 (513)
180 PF00176 SNF2_N: SNF2 family N 83.7 0.98 2.1E-05 45.5 3.4 57 8-73 107-172 (299)
181 PRK04914 ATP-dependent helicas 83.2 1.7 3.8E-05 51.1 5.5 63 9-74 248-316 (956)
182 PRK13104 secA preprotein trans 80.9 1.4 2.9E-05 51.1 3.4 34 8-41 171-212 (896)
183 PF13871 Helicase_C_4: Helicas 80.5 7.5 0.00016 39.0 8.2 119 178-355 54-176 (278)
184 PF06733 DEAD_2: DEAD_2; Inte 80.3 0.68 1.5E-05 43.1 0.7 36 7-42 118-156 (174)
185 KOG1002 Nucleotide excision re 79.2 7 0.00015 41.8 7.6 124 117-269 629-752 (791)
186 PRK10689 transcription-repair 79.0 3 6.4E-05 50.4 5.6 79 125-215 648-727 (1147)
187 TIGR00643 recG ATP-dependent D 78.9 5.6 0.00012 45.1 7.6 79 125-215 283-362 (630)
188 KOG0331 ATP-dependent RNA heli 78.5 9.6 0.00021 41.6 8.7 74 126-215 165-244 (519)
189 TIGR03117 cas_csf4 CRISPR-asso 78.3 2.4 5.3E-05 47.6 4.3 35 7-41 181-216 (636)
190 TIGR03714 secA2 accessory Sec 78.2 1.8 3.9E-05 49.5 3.3 35 8-42 164-206 (762)
191 KOG1015 Transcription regulato 78.1 17 0.00037 42.1 10.6 128 125-270 1141-1281(1567)
192 cd00268 DEADc DEAD-box helicas 77.8 23 0.0005 33.3 10.5 75 125-215 68-148 (203)
193 PRK12899 secA preprotein trans 76.9 1.9 4.2E-05 50.0 3.1 35 8-42 183-226 (970)
194 TIGR00963 secA preprotein tran 76.5 1.7 3.6E-05 49.4 2.4 34 9-42 146-187 (745)
195 COG1198 PriA Primosomal protei 76.3 3.7 7.9E-05 46.8 5.1 75 125-215 244-318 (730)
196 PF14617 CMS1: U3-containing 9 76.3 2.8 6.2E-05 41.4 3.7 34 8-41 177-211 (252)
197 PRK11192 ATP-dependent RNA hel 75.0 8.9 0.00019 41.2 7.6 74 126-215 73-152 (434)
198 PRK11776 ATP-dependent RNA hel 74.4 12 0.00027 40.5 8.5 75 126-215 72-152 (460)
199 PRK04837 ATP-dependent RNA hel 72.3 12 0.00026 40.1 7.8 74 126-215 83-162 (423)
200 PRK04537 ATP-dependent RNA hel 71.1 10 0.00022 42.5 7.0 74 126-215 84-164 (572)
201 PRK14701 reverse gyrase; Provi 70.9 11 0.00024 47.2 7.8 67 125-201 121-187 (1638)
202 smart00489 DEXDc3 DEAD-like he 70.8 6.6 0.00014 39.9 5.0 34 8-42 211-247 (289)
203 smart00488 DEXDc2 DEAD-like he 70.8 6.6 0.00014 39.9 5.0 34 8-42 211-247 (289)
204 PRK10590 ATP-dependent RNA hel 68.6 15 0.00033 39.8 7.6 73 127-215 76-154 (456)
205 TIGR01054 rgy reverse gyrase. 67.8 8.8 0.00019 46.7 5.9 68 125-201 120-187 (1171)
206 KOG0338 ATP-dependent RNA heli 67.8 17 0.00037 39.3 7.2 76 124-215 250-332 (691)
207 PRK06526 transposase; Provisio 67.1 13 0.00027 37.0 6.0 72 8-83 126-210 (254)
208 PRK07003 DNA polymerase III su 66.2 10 0.00022 43.4 5.6 49 19-70 107-156 (830)
209 PRK12323 DNA polymerase III su 66.1 8.6 0.00019 43.3 4.9 46 22-70 115-161 (700)
210 PRK11054 helD DNA helicase IV; 65.9 1.8E+02 0.004 33.3 15.7 43 24-69 423-465 (684)
211 PRK09200 preprotein translocas 62.5 5.3 0.00011 46.1 2.6 35 8-42 168-210 (790)
212 PTZ00110 helicase; Provisional 62.1 17 0.00038 40.4 6.6 74 126-215 203-282 (545)
213 KOG0339 ATP-dependent RNA heli 62.1 17 0.00037 39.2 5.9 74 126-215 295-375 (731)
214 PRK08074 bifunctional ATP-depe 61.7 15 0.00032 43.8 6.2 34 8-41 431-465 (928)
215 KOG0329 ATP-dependent RNA heli 61.5 16 0.00034 35.9 5.1 76 126-216 110-192 (387)
216 TIGR00678 holB DNA polymerase 60.9 15 0.00032 34.4 5.0 23 20-42 85-107 (188)
217 PRK01297 ATP-dependent RNA hel 60.7 24 0.00052 38.5 7.3 75 126-215 162-242 (475)
218 PF13173 AAA_14: AAA domain 60.3 10 0.00022 33.1 3.5 38 31-72 61-98 (128)
219 PF13401 AAA_22: AAA domain; P 59.6 8.1 0.00018 33.4 2.8 37 33-72 89-125 (131)
220 PF05729 NACHT: NACHT domain 59.0 29 0.00064 31.0 6.5 58 34-91 84-148 (166)
221 KOG4439 RNA polymerase II tran 58.3 50 0.0011 37.3 8.8 93 158-269 769-861 (901)
222 KOG1132 Helicase of the DEAD s 57.6 1.4E+02 0.003 34.8 12.3 154 65-227 482-662 (945)
223 PF08148 DSHCT: DSHCT (NUC185) 57.2 14 0.0003 34.6 4.1 37 327-364 1-39 (180)
224 PRK08181 transposase; Validate 56.8 29 0.00064 34.8 6.5 73 8-84 134-219 (269)
225 PRK08691 DNA polymerase III su 56.6 19 0.0004 41.0 5.5 44 25-70 113-156 (709)
226 PRK06835 DNA replication prote 56.5 30 0.00065 35.8 6.7 74 8-82 211-297 (329)
227 PRK12723 flagellar biosynthesi 55.9 27 0.00059 37.0 6.4 53 29-82 252-306 (388)
228 TIGR02647 DNA conserved hypoth 55.8 14 0.00031 29.0 3.1 31 312-342 34-66 (77)
229 PRK12904 preprotein translocas 55.5 9 0.0002 44.3 2.9 35 8-42 170-212 (830)
230 PRK07952 DNA replication prote 55.1 31 0.00066 34.1 6.2 75 8-83 127-214 (244)
231 PF13177 DNA_pol3_delta2: DNA 54.5 23 0.0005 32.4 5.0 47 24-73 95-142 (162)
232 PRK09112 DNA polymerase III su 54.5 23 0.00049 37.1 5.5 46 23-70 133-178 (351)
233 KOG2036 Predicted P-loop ATPas 54.5 52 0.0011 37.1 8.2 89 161-275 524-612 (1011)
234 PRK14951 DNA polymerase III su 54.1 27 0.00059 39.3 6.3 48 19-69 112-160 (618)
235 PRK13766 Hef nuclease; Provisi 53.7 45 0.00098 38.8 8.4 75 124-215 56-136 (773)
236 PRK14949 DNA polymerase III su 53.6 24 0.00053 41.2 5.9 47 26-77 114-161 (944)
237 PRK14956 DNA polymerase III su 53.3 21 0.00046 38.8 5.1 51 22-76 112-162 (484)
238 PRK07471 DNA polymerase III su 52.5 19 0.00041 37.9 4.6 50 22-73 132-181 (365)
239 PRK14961 DNA polymerase III su 52.2 27 0.00058 36.7 5.7 46 22-69 110-155 (363)
240 PF00270 DEAD: DEAD/DEAH box h 52.2 1.1E+02 0.0023 27.4 9.2 60 125-200 43-103 (169)
241 PRK14974 cell division protein 51.9 34 0.00073 35.5 6.2 44 30-74 221-265 (336)
242 PRK14964 DNA polymerase III su 51.5 24 0.00053 38.5 5.3 46 21-69 106-152 (491)
243 PRK14958 DNA polymerase III su 51.3 25 0.00054 38.8 5.4 42 25-69 113-155 (509)
244 KOG0389 SNF2 family DNA-depend 51.0 45 0.00097 38.1 7.2 69 122-205 444-512 (941)
245 PRK14969 DNA polymerase III su 50.7 28 0.0006 38.6 5.7 49 19-70 107-156 (527)
246 PRK07994 DNA polymerase III su 50.5 22 0.00048 40.2 4.9 50 22-76 110-160 (647)
247 PRK11747 dinG ATP-dependent DN 50.3 17 0.00038 41.7 4.2 34 8-41 219-256 (697)
248 KOG0386 Chromatin remodeling c 50.2 37 0.0008 39.7 6.5 113 124-270 724-842 (1157)
249 COG1111 MPH1 ERCC4-like helica 48.8 53 0.0011 35.6 7.0 75 124-215 56-136 (542)
250 PRK14960 DNA polymerase III su 48.0 27 0.00058 39.5 5.0 42 25-69 112-154 (702)
251 PRK07764 DNA polymerase III su 47.5 38 0.00083 39.6 6.4 43 24-69 113-156 (824)
252 PRK06645 DNA polymerase III su 47.3 33 0.00073 37.7 5.6 36 19-56 116-151 (507)
253 PF03354 Terminase_1: Phage Te 47.2 24 0.00051 38.6 4.5 64 9-74 98-165 (477)
254 PHA03368 DNA packaging termina 46.1 25 0.00054 39.7 4.3 49 31-83 352-400 (738)
255 PF00072 Response_reg: Respons 46.0 75 0.0016 26.0 6.6 61 14-82 30-90 (112)
256 PF05621 TniB: Bacterial TniB 45.9 23 0.00049 36.0 3.7 41 31-73 145-189 (302)
257 PRK08451 DNA polymerase III su 45.5 40 0.00087 37.3 5.8 42 26-70 112-154 (535)
258 PRK09401 reverse gyrase; Revie 45.2 61 0.0013 39.6 7.8 66 125-200 122-187 (1176)
259 PRK14965 DNA polymerase III su 44.4 36 0.00079 38.2 5.5 46 20-68 108-154 (576)
260 PRK09111 DNA polymerase III su 44.4 36 0.00077 38.3 5.4 49 19-70 120-169 (598)
261 PRK14952 DNA polymerase III su 44.0 40 0.00086 37.8 5.6 44 22-68 109-153 (584)
262 PRK14971 DNA polymerase III su 44.0 50 0.0011 37.3 6.5 49 21-72 111-159 (614)
263 PF07517 SecA_DEAD: SecA DEAD- 43.9 16 0.00036 36.5 2.4 33 9-41 167-207 (266)
264 PF00448 SRP54: SRP54-type pro 43.8 51 0.0011 31.3 5.7 47 30-77 82-129 (196)
265 PRK08903 DnaA regulatory inact 43.7 1.1E+02 0.0024 29.3 8.2 62 8-74 70-132 (227)
266 PRK13107 preprotein translocas 43.3 15 0.00031 42.9 2.1 34 8-41 171-212 (908)
267 PHA00149 DNA encapsidation pro 43.3 41 0.0009 33.8 4.9 58 26-83 106-171 (331)
268 TIGR00604 rad3 DNA repair heli 43.0 11 0.00024 43.4 1.1 33 8-41 195-230 (705)
269 PRK06893 DNA replication initi 43.0 35 0.00076 33.2 4.5 49 28-78 88-139 (229)
270 PTZ00424 helicase 45; Provisio 42.4 2.2E+02 0.0047 29.9 10.9 75 125-215 95-175 (401)
271 PRK14955 DNA polymerase III su 41.9 41 0.00089 35.8 5.2 22 21-42 117-138 (397)
272 TIGR02397 dnaX_nterm DNA polym 41.4 47 0.001 34.4 5.5 37 19-57 105-141 (355)
273 TIGR00614 recQ_fam ATP-depende 41.1 41 0.00089 36.6 5.1 60 125-200 50-109 (470)
274 PRK05563 DNA polymerase III su 41.1 46 0.001 37.2 5.6 39 20-61 108-146 (559)
275 PRK12422 chromosomal replicati 40.3 69 0.0015 34.7 6.6 65 8-75 169-246 (445)
276 smart00611 SEC63 Domain of unk 39.9 3.3E+02 0.0071 27.6 11.4 30 332-361 3-32 (312)
277 KOG0341 DEAD-box protein abstr 39.8 36 0.00077 35.6 4.0 85 126-221 246-345 (610)
278 PLN00206 DEAD-box ATP-dependen 39.7 88 0.0019 34.6 7.5 75 125-215 195-275 (518)
279 PRK14963 DNA polymerase III su 39.6 55 0.0012 36.0 5.8 33 23-57 108-140 (504)
280 PRK14087 dnaA chromosomal repl 39.3 42 0.00092 36.4 4.8 63 7-71 170-247 (450)
281 PRK07940 DNA polymerase III su 39.2 70 0.0015 34.0 6.3 51 19-72 105-155 (394)
282 PRK14953 DNA polymerase III su 38.5 52 0.0011 36.0 5.4 35 19-55 107-141 (486)
283 COG1197 Mfd Transcription-repa 38.4 1.1E+02 0.0024 36.8 8.2 114 124-249 641-763 (1139)
284 PF15586 Imm47: Immunity prote 38.4 70 0.0015 27.6 5.1 47 9-60 45-91 (116)
285 PRK14957 DNA polymerase III su 38.2 49 0.0011 36.8 5.1 48 19-69 107-155 (546)
286 PHA02544 44 clamp loader, smal 37.6 1E+02 0.0022 31.3 7.2 43 26-70 95-138 (316)
287 PRK14959 DNA polymerase III su 37.6 47 0.001 37.4 4.9 32 22-55 110-141 (624)
288 PRK06731 flhF flagellar biosyn 37.0 1E+02 0.0022 30.9 6.8 53 30-83 153-209 (270)
289 PF00308 Bac_DnaA: Bacterial d 36.8 33 0.00072 33.1 3.3 65 7-73 63-140 (219)
290 TIGR01389 recQ ATP-dependent D 36.6 57 0.0012 36.7 5.6 60 125-200 52-111 (591)
291 PRK07399 DNA polymerase III su 36.3 65 0.0014 33.1 5.4 51 19-72 112-162 (314)
292 COG2812 DnaX DNA polymerase II 36.0 36 0.00079 37.3 3.7 53 20-76 108-160 (515)
293 PRK14950 DNA polymerase III su 36.0 58 0.0013 36.6 5.4 47 22-71 111-157 (585)
294 PF05894 Podovirus_Gp16: Podov 35.5 60 0.0013 33.1 4.8 48 25-72 106-160 (333)
295 PRK08116 hypothetical protein; 34.8 1.2E+02 0.0025 30.4 6.9 71 8-81 142-228 (268)
296 TIGR02621 cas3_GSU0051 CRISPR- 34.7 1.2E+02 0.0025 35.7 7.6 64 125-199 60-142 (844)
297 PRK14962 DNA polymerase III su 34.7 55 0.0012 35.7 4.8 19 24-42 110-128 (472)
298 cd00561 CobA_CobO_BtuR ATP:cor 34.7 1E+02 0.0022 28.3 5.8 46 29-77 93-142 (159)
299 KOG1513 Nuclear helicase MOP-3 34.6 35 0.00076 38.9 3.2 36 33-72 407-453 (1300)
300 PRK13767 ATP-dependent helicas 34.4 2.6E+02 0.0057 33.2 10.7 64 126-200 84-154 (876)
301 COG0610 Type I site-specific r 34.4 39 0.00085 40.4 3.9 61 8-73 350-413 (962)
302 PF13086 AAA_11: AAA domain; P 34.2 16 0.00034 34.9 0.5 44 8-53 170-213 (236)
303 PRK11889 flhF flagellar biosyn 34.1 1.3E+02 0.0027 32.2 7.1 69 14-83 303-375 (436)
304 PHA03333 putative ATPase subun 33.9 65 0.0014 36.6 5.2 51 30-84 293-343 (752)
305 PF03969 AFG1_ATPase: AFG1-lik 33.8 67 0.0015 33.7 5.1 50 28-78 124-173 (362)
306 KOG1132 Helicase of the DEAD s 33.8 31 0.00066 39.8 2.7 33 8-41 222-257 (945)
307 PRK06921 hypothetical protein; 33.6 77 0.0017 31.7 5.4 72 8-79 146-230 (266)
308 PRK12898 secA preprotein trans 33.4 1.8E+02 0.004 33.0 8.7 65 124-207 142-206 (656)
309 PRK14948 DNA polymerase III su 33.2 71 0.0015 36.2 5.5 31 24-56 114-144 (620)
310 PRK13826 Dtr system oriT relax 33.0 9.9E+02 0.021 29.2 15.0 41 28-72 465-505 (1102)
311 PRK14970 DNA polymerase III su 32.7 91 0.002 32.6 6.0 23 20-42 97-119 (367)
312 PRK06647 DNA polymerase III su 32.0 75 0.0016 35.5 5.4 43 24-69 112-154 (563)
313 PRK07133 DNA polymerase III su 31.9 72 0.0016 36.7 5.2 51 19-72 106-156 (725)
314 PRK08727 hypothetical protein; 31.9 85 0.0018 30.6 5.3 63 8-72 69-135 (233)
315 KOG1016 Predicted DNA helicase 31.8 1.2E+02 0.0027 34.7 6.7 123 126-269 719-852 (1387)
316 KOG4439 RNA polymerase II tran 31.8 26 0.00056 39.4 1.6 71 9-84 432-518 (901)
317 TIGR03420 DnaA_homol_Hda DnaA 31.6 1.1E+02 0.0023 29.2 5.9 43 29-74 88-133 (226)
318 PF12846 AAA_10: AAA-like doma 31.5 45 0.00097 33.2 3.4 49 30-79 219-267 (304)
319 COG1199 DinG Rad3-related DNA 31.3 44 0.00096 38.1 3.6 34 8-41 194-230 (654)
320 PRK05642 DNA replication initi 31.0 92 0.002 30.4 5.3 68 8-78 73-144 (234)
321 PRK06620 hypothetical protein; 30.7 1.4E+02 0.0031 28.6 6.5 40 29-73 83-122 (214)
322 COG1485 Predicted ATPase [Gene 30.6 77 0.0017 32.9 4.7 50 28-79 127-177 (367)
323 cd00046 DEXDc DEAD-like helica 30.3 3.2E+02 0.0069 22.7 8.5 61 124-201 28-88 (144)
324 PF10593 Z1: Z1 domain; Inter 29.9 2.5E+02 0.0054 27.6 8.1 84 159-268 110-194 (239)
325 smart00492 HELICc3 helicase su 29.0 94 0.002 27.7 4.6 78 173-256 35-127 (141)
326 PRK08058 DNA polymerase III su 29.0 87 0.0019 32.3 5.0 46 20-68 99-145 (329)
327 KOG0337 ATP-dependent RNA heli 28.9 1.9E+02 0.0042 30.8 7.2 76 124-215 88-169 (529)
328 TIGR02881 spore_V_K stage V sp 28.7 81 0.0018 31.2 4.6 44 32-75 106-155 (261)
329 PF09848 DUF2075: Uncharacteri 28.6 33 0.00073 35.7 1.9 14 28-41 80-93 (352)
330 PRK04296 thymidine kinase; Pro 28.6 1.8E+02 0.0038 27.3 6.7 50 16-71 65-114 (190)
331 PRK05707 DNA polymerase III su 28.6 97 0.0021 32.0 5.2 47 21-70 96-143 (328)
332 PRK08769 DNA polymerase III su 28.3 93 0.002 32.0 5.0 48 22-72 104-152 (319)
333 KOG0330 ATP-dependent RNA heli 28.2 2.7E+02 0.006 29.4 8.1 61 124-200 127-187 (476)
334 PRK09751 putative ATP-dependen 28.2 2.9E+02 0.0064 34.7 9.8 79 126-215 37-129 (1490)
335 PRK12402 replication factor C 28.0 1.5E+02 0.0033 30.2 6.6 41 27-70 121-162 (337)
336 PRK14954 DNA polymerase III su 27.4 1.3E+02 0.0029 34.0 6.4 46 22-70 118-164 (620)
337 KOG0701 dsRNA-specific nucleas 27.1 20 0.00044 44.3 -0.1 57 174-255 343-399 (1606)
338 TIGR03817 DECH_helic helicase/ 26.8 2E+02 0.0043 33.5 7.9 59 124-200 79-137 (742)
339 PRK00149 dnaA chromosomal repl 26.6 98 0.0021 33.5 5.1 65 8-75 178-255 (450)
340 KOG0336 ATP-dependent RNA heli 26.6 2.1E+02 0.0046 30.3 7.0 74 125-215 293-372 (629)
341 KOG0346 RNA helicase [RNA proc 26.5 1.6E+02 0.0035 31.6 6.2 86 107-206 71-164 (569)
342 KOG0350 DEAD-box ATP-dependent 26.0 1.6E+02 0.0034 32.1 6.1 78 126-215 215-300 (620)
343 PF00004 AAA: ATPase family as 25.8 52 0.0011 28.0 2.3 14 31-44 58-71 (132)
344 TIGR00708 cobA cob(I)alamin ad 25.7 1.6E+02 0.0034 27.5 5.5 44 30-76 96-143 (173)
345 smart00491 HELICc2 helicase su 25.6 84 0.0018 28.1 3.6 63 194-256 49-128 (142)
346 TIGR01073 pcrA ATP-dependent D 25.1 7.2E+02 0.016 28.7 12.1 13 30-42 208-220 (726)
347 PRK05896 DNA polymerase III su 24.9 1.1E+02 0.0024 34.3 5.2 45 23-70 111-156 (605)
348 TIGR00362 DnaA chromosomal rep 24.8 1.1E+02 0.0024 32.5 5.0 69 8-79 166-247 (405)
349 PRK06964 DNA polymerase III su 24.5 1.3E+02 0.0029 31.3 5.3 51 19-72 120-171 (342)
350 PRK14086 dnaA chromosomal repl 24.3 1.1E+02 0.0024 34.5 4.9 63 7-71 343-418 (617)
351 PF00580 UvrD-helicase: UvrD/R 23.4 91 0.002 31.2 3.9 28 30-60 255-282 (315)
352 PRK11057 ATP-dependent DNA hel 23.3 1.3E+02 0.0029 33.9 5.5 59 126-200 65-123 (607)
353 PRK12902 secA preprotein trans 23.1 62 0.0014 37.8 2.8 34 8-41 174-215 (939)
354 PRK06871 DNA polymerase III su 23.0 1.3E+02 0.0029 31.0 5.0 48 21-71 97-145 (325)
355 PRK14722 flhF flagellar biosyn 22.9 1.7E+02 0.0038 30.8 5.9 48 29-77 213-261 (374)
356 PLN03137 ATP-dependent DNA hel 22.8 1.3E+02 0.0028 36.4 5.3 59 126-200 500-560 (1195)
357 PF09862 DUF2089: Protein of u 22.7 3.6E+02 0.0077 23.2 6.6 70 396-474 32-101 (113)
358 KOG0740 AAA+-type ATPase [Post 22.4 1.4E+02 0.0031 32.0 5.1 54 18-73 232-298 (428)
359 PF14947 HTH_45: Winged helix- 22.1 70 0.0015 25.2 2.2 33 309-341 31-66 (77)
360 KOG0947 Cytoplasmic exosomal R 22.1 6.2E+02 0.013 30.2 10.1 32 314-345 1056-1087(1248)
361 COG0470 HolB ATPase involved i 22.1 1.2E+02 0.0026 30.7 4.5 44 25-70 103-146 (325)
362 PF02889 Sec63: Sec63 Brl doma 21.8 73 0.0016 32.4 2.8 29 333-361 1-29 (314)
363 COG1205 Distinct helicase fami 21.7 2.7E+02 0.0058 33.0 7.6 70 124-207 113-183 (851)
364 PRK05986 cob(I)alamin adenolsy 21.3 2.3E+02 0.0049 26.9 5.7 44 30-76 114-161 (191)
365 KOG0989 Replication factor C, 21.2 1.2E+02 0.0026 31.0 4.0 39 29-70 127-166 (346)
366 PRK14088 dnaA chromosomal repl 21.1 2.3E+02 0.005 30.6 6.6 69 7-78 159-241 (440)
367 PF05707 Zot: Zonular occluden 21.0 77 0.0017 29.8 2.6 43 31-73 79-126 (193)
368 PRK05255 hypothetical protein; 21.0 76 0.0016 29.4 2.4 51 304-359 12-63 (171)
369 PRK04132 replication factor C 20.7 1.8E+02 0.0039 34.2 5.9 36 31-69 630-666 (846)
370 PF01695 IstB_IS21: IstB-like 20.7 80 0.0017 29.4 2.6 75 8-84 75-160 (178)
371 PTZ00095 40S ribosomal protein 20.7 92 0.002 28.7 2.8 32 309-340 117-153 (169)
372 PRK08699 DNA polymerase III su 20.6 2E+02 0.0044 29.6 5.8 37 19-57 101-137 (325)
373 PF02463 SMC_N: RecF/RecN/SMC 20.6 2.1E+02 0.0045 27.2 5.6 42 30-72 157-198 (220)
374 COG2519 GCD14 tRNA(1-methylade 20.5 2.9E+02 0.0062 27.4 6.4 47 96-148 163-210 (256)
375 COG3973 Superfamily I DNA and 20.3 4.5E+02 0.0097 29.7 8.3 32 117-148 646-677 (747)
376 PLN03025 replication factor C 20.2 1.3E+02 0.0027 30.9 4.2 36 30-68 98-134 (319)
No 1
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-133 Score=1046.35 Aligned_cols=531 Identities=54% Similarity=0.946 Sum_probs=507.7
Q ss_pred ccccCCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhhC
Q 008209 4 CFCVLLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFY 83 (574)
Q Consensus 4 ~~~~~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f~ 83 (574)
+.|..|.|+|||||+|||+++.||.|++|++|||||||||++++|+++++||+++++|+++|+|+||||+|+++|++||.
T Consensus 136 ~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimSATlda~kfS~yF~ 215 (674)
T KOG0922|consen 136 STSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMSATLDAEKFSEYFN 215 (674)
T ss_pred cCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEeeeecHHHHHHHhc
Confidence 44556999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeCCeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEE
Q 008209 84 GAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVV 163 (574)
Q Consensus 84 ~~~~i~~~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~ 163 (574)
+||++.++||.|||+++|.+.+..||+++++.++++||.++++|+|||||+|++||+.+++.|.+....+....+. .++
T Consensus 216 ~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~-~~l 294 (674)
T KOG0922|consen 216 NAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPE-LIL 294 (674)
T ss_pred CCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcc-eee
Confidence 9999999999999999999999999999999999999999999999999999999999999999987776554444 789
Q ss_pred EcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhh
Q 008209 164 PLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKAS 243 (574)
Q Consensus 164 ~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~ 243 (574)
|+||+||.++|.+||++.+.|. ||||+||||||||||||||+||||+|++|++.|||.+|++.|...|||+++
T Consensus 295 ply~aL~~e~Q~rvF~p~p~g~-------RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkas 367 (674)
T KOG0922|consen 295 PLYGALPSEEQSRVFDPAPPGK-------RKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKAS 367 (674)
T ss_pred eecccCCHHHhhccccCCCCCc-------ceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCCCCCeEEeeccccccccccCCCCcchhccCCchhhHHHHhhcCCCCccccCCCCCCcHHHHHHHHHHHHH
Q 008209 244 AHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNY 323 (574)
Q Consensus 244 ~~QR~GRaGR~~~G~~~rl~t~~~~~~~l~~~~~pei~~~~l~~~~L~l~~~~~~~~~~~~~l~~P~~~~l~~al~~L~~ 323 (574)
+.||+|||||++||+|||||++++| +.|++.+.|||+|++|+..+|+||++|++|+..|+|+|||+++++..|++.|+.
T Consensus 368 A~QRaGRAGRt~pGkcyRLYte~~~-~~~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~l~F~f~d~P~~~~l~~AL~~L~~ 446 (674)
T KOG0922|consen 368 ANQRAGRAGRTGPGKCYRLYTESAY-DKMPLQTVPEIQRVNLSSAVLQLKALGINDPLRFPFIDPPPPEALEEALEELYS 446 (674)
T ss_pred HhhhcccCCCCCCceEEEeeeHHHH-hhcccCCCCceeeechHHHHHHHHhcCCCCcccCCCCCCCChHHHHHHHHHHHh
Confidence 9999999999999999999999999 799999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCCCcCh-hhhhhccCCCCHHHHHHHHhccCCCCchhhHhHHhhccCCCcccCChhHHHH-HHHHHHhhCCCCCc
Q 008209 324 LGALDDDGNLTE-MGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKA-ADEAKARFGHIDGD 401 (574)
Q Consensus 324 lgald~~~~lT~-lG~~~~~lpl~p~~~~~ll~~~~~~c~~~~~~i~a~ls~~~~f~~~~~~~~~-~~~~~~~~~~~~sD 401 (574)
+||||++|.||. +|+.|+++|++|.++|||+.+..+||.+|+++|+||||++++|.+|.+.+.+ ++..+.+|.+.+||
T Consensus 447 lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~~f~~p~~~~~~~a~~~~~kf~~~eGD 526 (674)
T KOG0922|consen 447 LGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLSVQSVFSRPKDKKAEDADRKRAKFANPEGD 526 (674)
T ss_pred cCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeeeccceecCccchhhhhhhHHHHhhcCcccC
Confidence 999999999998 9999999999999999999999999999999999999999999999988776 89999999999999
Q ss_pred HHHHHHHHHHHHhCCCCchhHhhhcCCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCchhHHHHHHHHHhccccceee
Q 008209 402 HLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSNDFNSRDYYVNIRKAMLAGYFMQVAH 481 (574)
Q Consensus 402 ~l~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~ir~qL~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~niA~ 481 (574)
|++++++|+.|.+++..++||++|+||++.|++|.++|+||.+++.+.+++..++. .+.+.|++||++|||.|+|+
T Consensus 527 h~tlL~vy~~~~~~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~~~~~s~~----~d~~~i~k~l~aGff~N~A~ 602 (674)
T KOG0922|consen 527 HLTLLNVYESWKENGTSKKWCKENFINARSLKRAKDIRKQLRRILDKFGLPVSSCG----GDMEKIRKCLCAGFFRNVAE 602 (674)
T ss_pred HHHHHHHHHHHHhcCChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcCCCccCCC----CCHHHHHHHHHHHHHHHHHH
Confidence 99999999999998889999999999999999999999999999999988875432 33578999999999999999
Q ss_pred ec-CCCcEEEeecCeEEEEcCCCCCC-CCCcEEEEEEecccchhhcccccccCHHHHHhHcCccccccc
Q 008209 482 LE-RTGQYLTVKDNQVVHLHPSNCLD-HKPEWVIYNEYVLTSRNFIRTVTDVRGEWLIDIAPHYYDLSN 548 (574)
Q Consensus 482 ~~-~~~~y~~~~~~~~~~ihpsS~l~-~~~~~ivy~e~~~t~k~~i~~vt~I~~~wl~~~~~~~~~~~~ 548 (574)
+. .+| |+++.+|+.++|||||+++ .+|+||||+|++.|+|.|||+||+|+++||.+++|++++...
T Consensus 603 ~~~~~~-Yrti~~~~~v~IHPSS~l~~~~p~~viy~el~~Ttk~Y~r~Vt~i~~~wL~e~ap~~~~~~~ 670 (674)
T KOG0922|consen 603 RDYQDG-YRTIRGGQPVYIHPSSVLFRRKPEWVIYHELLQTTKEYMRNVTAIDPEWLLELAPHFFKQSD 670 (674)
T ss_pred hhcCCC-eEEccCCcEEEEechHHhhcCCCCEEEEEEEeecchHhHhheeecCHHHHHHhCchHhhccc
Confidence 98 446 9999999999999999998 568999999999999999999999999999999999976543
No 2
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.1e-133 Score=999.59 Aligned_cols=551 Identities=81% Similarity=1.281 Sum_probs=535.1
Q ss_pred CccccCCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhh
Q 008209 3 LCFCVLLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYF 82 (574)
Q Consensus 3 ~~~~~~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f 82 (574)
.|.++.|=+.|||+|||+|+.++||.|..|++||+||+|||++.+|++++++|+++..||++|+|+||||+++.+|++||
T Consensus 131 dC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf 210 (699)
T KOG0925|consen 131 DCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYF 210 (699)
T ss_pred ccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCCCceEEEeecccchHHHHHHh
Confidence 45666688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEeCCeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEE
Q 008209 83 YGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKV 162 (574)
Q Consensus 83 ~~~~~i~~~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v 162 (574)
+++|++.+|| .|||+++|.+.++.||++++++++++||..++.|+||||++|.+||+.+|+.+.....+++.+.+.+.|
T Consensus 211 ~n~Pll~vpg-~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v 289 (699)
T KOG0925|consen 211 GNAPLLAVPG-THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKV 289 (699)
T ss_pred CCCCeeecCC-CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceE
Confidence 9999999999 999999999999999999999999999999999999999999999999999999988888888899999
Q ss_pred EEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHh
Q 008209 163 VPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKA 242 (574)
Q Consensus 163 ~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~ 242 (574)
+||| +.+|+++|++.+. +.++...|||||+||+||+|+||++|.+|||.|+.|+++|||+.+.+++...|||++
T Consensus 290 ~PLy----P~~qq~iFep~p~--~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISka 363 (699)
T KOG0925|consen 290 VPLY----PAQQQRIFEPAPE--KRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKA 363 (699)
T ss_pred EecC----chhhccccCCCCc--ccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHh
Confidence 9999 7889999999983 446677899999999999999999999999999999999999999999999999999
Q ss_pred hHHHhcccCCCCCCCeEEeeccccccccccCCCCcchhccCCchhhHHHHhhcCCCCccccCCCCCCcHHHHHHHHHHHH
Q 008209 243 SAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLN 322 (574)
Q Consensus 243 ~~~QR~GRaGR~~~G~~~rl~t~~~~~~~l~~~~~pei~~~~l~~~~L~l~~~~~~~~~~~~~l~~P~~~~l~~al~~L~ 322 (574)
++.||+|||||+.||+||||||++.|+..|.+.+.|||++++|++++|++|.+|++++.+|+|+|||.++++.+|++.|.
T Consensus 364 sA~qR~gragrt~pGkcfrLYte~~~~~em~~~typeilrsNL~s~VL~LKklgI~dlvhfdfmDpPAPEtLMrALE~Ln 443 (699)
T KOG0925|consen 364 SAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTYPEILRSNLSSTVLQLKKLGIDDLVHFDFMDPPAPETLMRALEVLN 443 (699)
T ss_pred HHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCcHHHHHHhhHHHHHHHHhcCcccccCCcCCCCCChHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCccCCCCcChhhhhhccCCCCHHHHHHHHhccCCCCchhhHhHHhhccCCCcccCCh-hHHHHHHHHHHhhCCCCCc
Q 008209 323 YLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPR-EAQKAADEAKARFGHIDGD 401 (574)
Q Consensus 323 ~lgald~~~~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~~~~~~i~a~ls~~~~f~~~~-~~~~~~~~~~~~~~~~~sD 401 (574)
.++|||+||+||++|.+|++||+||.+||||+.+++|+|..|+++|+|||++.+.|++|. +.++.+++++..|++.+||
T Consensus 444 YLaaLdDdGnLT~lG~imSEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsvPncFvRp~~~a~kaAdeak~~faH~dGD 523 (699)
T KOG0925|consen 444 YLAALDDDGNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSVPNCFVRPTSSASKAADEAKETFAHIDGD 523 (699)
T ss_pred hhhhhCCCcccchhhhhhhcCCCChHHHHHHhhcCCCCchHHHHHHHhcccCCccccCCChhHHHHHHHHHHHhccCCcc
Confidence 999999999999999999999999999999999999999999999999999999999998 6778899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCchhHhhhcCCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCchhHHHHHHHHHhccccceee
Q 008209 402 HLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSNDFNSRDYYVNIRKAMLAGYFMQVAH 481 (574)
Q Consensus 402 ~l~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~ir~qL~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~niA~ 481 (574)
|+|++|+|.+|+++....+||++||||+++|+.|.++|.||.++|.+++++..+.+|.+.++...|+|||++|||.+||+
T Consensus 524 HlTLlnVYhAfkq~~~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R~~L~~~st~F~S~~y~~nirKALvsgyFmqVA~ 603 (699)
T KOG0925|consen 524 HLTLLNVYHAFKQNNEDPNWCYDNFLNYRALKSADNVRQQLLRIMDRFNLPLCSTDFGSRDYYVNIRKALVSGYFMQVAH 603 (699)
T ss_pred hHHHHHHHHHHHhcCCChhHHHHhcccHHHHHhHHHHHHHHHHHHHHhcCcccCCCCCChhHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998888999999999999999999999999999999999999888988889999999999999999999
Q ss_pred ecCCCcEEEeecCeEEEEcCCCCCCCCCcEEEEEEecccchhhcccccccCHHHHHhHcCcccccccCCchhHHHHHHH
Q 008209 482 LERTGQYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSRNFIRTVTDVRGEWLIDIAPHYYDLSNFPQCEAKRVLER 560 (574)
Q Consensus 482 ~~~~~~y~~~~~~~~~~ihpsS~l~~~~~~ivy~e~~~t~k~~i~~vt~I~~~wl~~~~~~~~~~~~~~~~~~~~~~~~ 560 (574)
....|+|.++.+++.|++||++++.++|+||+|+|++.|+|+|||.||.|.|+||.+++|+||..++||++|+|+.+++
T Consensus 604 ~~~~~~Ylt~kdnqvvqLhps~~l~~~PeWVlyneFvlt~~N~ir~vt~I~pewlv~laP~YydlsNfp~~e~k~~L~~ 682 (699)
T KOG0925|consen 604 LERGGHYLTVKDNQVVQLHPSTCLDHKPEWVLYNEFVLTTKNFIRTVTDIRPEWLVELAPQYYDLSNFPPSEAKRALEQ 682 (699)
T ss_pred hccCCceEEEecCceEEeccccccCCCCCeEEEeeEEeeccceeeeecccCHHHHHHhchhhcccccCCchHHHHHHHH
Confidence 9988899999999999999999999999999999999999999999999999999999999999999999999999986
No 3
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.4e-130 Score=1008.80 Aligned_cols=531 Identities=48% Similarity=0.873 Sum_probs=513.7
Q ss_pred ccCCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhhCCC
Q 008209 6 CVLLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGA 85 (574)
Q Consensus 6 ~~~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f~~~ 85 (574)
++.|.|.|||+|+|||+.+.|..|.+|++||+||||||++++|++++++|.++++|.|+|+|++|||||+++|++||++|
T Consensus 443 ~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a~kf~nfFgn~ 522 (1042)
T KOG0924|consen 443 SEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDAQKFSNFFGNC 522 (1042)
T ss_pred CCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccccHHHHHHHhCCC
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEeCCeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCC-CCCeEEEE
Q 008209 86 PLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQ-VGPVKVVP 164 (574)
Q Consensus 86 ~~i~~~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~-~~~~~v~~ 164 (574)
|.+.+|||+|||++.|...+.+||+++++...++||...+.|+||||++|+++|+..+..+.+.+.++... ..++.|+|
T Consensus 523 p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlp 602 (1042)
T KOG0924|consen 523 PQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLP 602 (1042)
T ss_pred ceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEe
Confidence 99999999999999999999999999999999999998889999999999999999999999988775432 24799999
Q ss_pred cCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhH
Q 008209 165 LYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASA 244 (574)
Q Consensus 165 lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~ 244 (574)
+||+||.+-|.++|++.+.|. |||||||||||||+|||||.||||+|++|.++|||+.|++.|...|||++++
T Consensus 603 iYSQLp~dlQ~kiFq~a~~~v-------RK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA 675 (1042)
T KOG0924|consen 603 IYSQLPADLQAKIFQKAEGGV-------RKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANA 675 (1042)
T ss_pred ehhhCchhhhhhhcccCCCCc-------eeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccc
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCCCCeEEeeccccccccccCCCCcchhccCCchhhHHHHhhcCCCCccccCCCCCCcHHHHHHHHHHHHHc
Q 008209 245 HQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYL 324 (574)
Q Consensus 245 ~QR~GRaGR~~~G~~~rl~t~~~~~~~l~~~~~pei~~~~l~~~~L~l~~~~~~~~~~~~~l~~P~~~~l~~al~~L~~l 324 (574)
.||+|||||++||.||||||+..|.+.|.+.++|||+|++|.+++|.||++|++++..|+|+|||+.+.+..++-.|..+
T Consensus 676 ~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dll~FdFmD~Pped~~~~sly~Lw~L 755 (1042)
T KOG0924|consen 676 DQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKFDFMDPPPEDNLLNSLYQLWTL 755 (1042)
T ss_pred hhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhhhhCCCcCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCcChhhhhhccCCCCHHHHHHHHhccCCCCchhhHhHHhhccCCCcccCChhHHHHHHHHHHhhCCCCCcHHH
Q 008209 325 GALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAADEAKARFGHIDGDHLT 404 (574)
Q Consensus 325 gald~~~~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~~~~~~i~a~ls~~~~f~~~~~~~~~~~~~~~~~~~~~sD~l~ 404 (574)
||||..|.||++|+.|++|||||.++|||+.|+.+||.+|+++|++|||+..+|++|.+..++++.++.+|..++|||+|
T Consensus 756 GAl~~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~VF~rpker~eead~ar~Kf~~~~sDhLT 835 (1042)
T KOG0924|consen 756 GALDNTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPAVFYRPKEREEEADAAREKFQVPESDHLT 835 (1042)
T ss_pred hccccCCccchhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccceeeccccchhhhhhHHhhhcCCCCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchhHhhhcCCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCchhHHHHHHHHHhccccceeeecC
Q 008209 405 LLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSNDFNSRDYYVNIRKAMLAGYFMQVAHLER 484 (574)
Q Consensus 405 ~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~ir~qL~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~niA~~~~ 484 (574)
+||+|++|.+++.+..||++|+|+.++|+.|+.+|+||+.++++++++..++ .+|+.|++|||+|||.|+|++.+
T Consensus 836 lLNVf~qw~~~~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~S~-----~dwdivrKCIcs~~fhn~Arlkg 910 (1042)
T KOG0924|consen 836 LLNVFNQWRKNKYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLISS-----DDWDIVRKCICSAYFHNAARLKG 910 (1042)
T ss_pred HHHHHHHHHhcCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCcccC-----chHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999988663 56999999999999999999999
Q ss_pred CCcEEEeecCeEEEEcCCCCCC--CCCcEEEEEEecccchhhcccccccCHHHHHhHcCccccccc
Q 008209 485 TGQYLTVKDNQVVHLHPSNCLD--HKPEWVIYNEYVLTSRNFIRTVTDVRGEWLIDIAPHYYDLSN 548 (574)
Q Consensus 485 ~~~y~~~~~~~~~~ihpsS~l~--~~~~~ivy~e~~~t~k~~i~~vt~I~~~wl~~~~~~~~~~~~ 548 (574)
.|.|.++.+|..++|||+|+|+ -.|+||||+|++.|++.||++||.|+|+||.+++|-+|...+
T Consensus 911 ~g~YV~~~tg~~c~lHPsS~L~g~y~p~Yivyhel~~T~keym~cvT~v~~~wl~E~gp~~y~ik~ 976 (1042)
T KOG0924|consen 911 IGEYVNLSTGIPCHLHPSSVLHGLYTPDYIVYHELLMTTKEYMQCVTSVSPEWLAELGPMFYSIKE 976 (1042)
T ss_pred CceEEEccCCcceeecchHhhhcCCCCCeeeehHHHHhHHHHHHHHhhCCHHHHHHhCceeEeccc
Confidence 9999999999999999999997 369999999999999999999999999999999999986553
No 4
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-128 Score=997.45 Aligned_cols=533 Identities=54% Similarity=0.952 Sum_probs=514.7
Q ss_pred CCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhhCCCCe
Q 008209 8 LLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPL 87 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f~~~~~ 87 (574)
.|-|+|||+|||||+++.+|.|++|++|||||||||++++|+|++++|++.+.||++|++++|||+|+++|+.||+++|+
T Consensus 355 kTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsSAT~DAekFS~fFDdapI 434 (902)
T KOG0923|consen 355 KTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISSATMDAEKFSAFFDDAPI 434 (902)
T ss_pred ceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeeccccCHHHHHHhccCCcE
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCC
Q 008209 88 MKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYS 167 (574)
Q Consensus 88 i~~~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs 167 (574)
+.+|||.|||+++|...|+.||+++++.++++||.+++.|+||||++|+++|+.+.+.|.+....+++....+-++|+|+
T Consensus 435 F~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYa 514 (902)
T KOG0923|consen 435 FRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYA 514 (902)
T ss_pred EeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred CCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHh
Q 008209 168 TLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQR 247 (574)
Q Consensus 168 ~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR 247 (574)
+||.+.|.+||++.++|. ||||+||||||||||||||.||||+|++|++.|||++||++|.+.|||++++.||
T Consensus 515 NLPselQakIFePtP~ga-------RKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QR 587 (902)
T KOG0923|consen 515 NLPSELQAKIFEPTPPGA-------RKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQR 587 (902)
T ss_pred cCChHHHHhhcCCCCCCc-------eeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhh
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCeEEeeccccccccccCCCCcchhccCCchhhHHHHhhcCCCCccccCCCCCCcHHHHHHHHHHHHHcCCc
Q 008209 248 SGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGAL 327 (574)
Q Consensus 248 ~GRaGR~~~G~~~rl~t~~~~~~~l~~~~~pei~~~~l~~~~L~l~~~~~~~~~~~~~l~~P~~~~l~~al~~L~~lgal 327 (574)
+|||||+|||+||||||...|+..+.+.+.|||+|.+|.++||.||++|+.|+.+|||+||||.+++..|++.|+.||||
T Consensus 588 aGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~Dl~~FdFmDpPp~etL~~aLE~LyaLGAL 667 (902)
T KOG0923|consen 588 AGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHDLIHFDFLDPPPTETLLKALEQLYALGAL 667 (902)
T ss_pred ccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcCcchhcccccCCCCChHHHHHHHHHHHHhhcc
Confidence 99999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcChhhhhhccCCCCHHHHHHHHhccCCCCchhhHhHHhhccC-CCcccCChhHHHHHHHHHHhhCCCCCcHHHHH
Q 008209 328 DDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSV-PNCFVRPREAQKAADEAKARFGHIDGDHLTLL 406 (574)
Q Consensus 328 d~~~~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~~~~~~i~a~ls~-~~~f~~~~~~~~~~~~~~~~~~~~~sD~l~~l 406 (574)
+..|+||.+|+.|++||+||+++|||+.+..++|.+|+++||||||+ .++|++|.++...++.+++.|....|||++++
T Consensus 668 n~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f~~~~gDhi~~L 747 (902)
T KOG0923|consen 668 NHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNFEEPVGDHIVLL 747 (902)
T ss_pred ccccchhhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhhhhhhhhccCCCCcchhhhh
Confidence 99999999999999999999999999999999999999999999999 57999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCchhHhhhcCCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCchhHHHHHHHHHhccccceeeecCCC
Q 008209 407 NVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSNDFNSRDYYVNIRKAMLAGYFMQVAHLERTG 486 (574)
Q Consensus 407 ~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~ir~qL~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~niA~~~~~~ 486 (574)
++|+.|...+.+.+||.+|++.+++|++|+++|.||..++.+.++...++ ......|++|+.+|||+|+|+....|
T Consensus 748 ~vyn~w~es~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~s~----~~~~~~irk~i~aGff~h~a~l~~~g 823 (902)
T KOG0923|consen 748 NVYNQWKESKYSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLSSN----QNDLDKIRKAITAGFFYHTAKLSKGG 823 (902)
T ss_pred HHHHHHhhcchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccccccCC----hHHHHHHHHHHhccccccceeccCCC
Confidence 99999999999999999999999999999999999999999887766443 23467899999999999999999999
Q ss_pred cEEEeecCeEEEEcCCCCCC-CCCcEEEEEEecccchhhcccccccCHHHHHhHcCcccccccCCc
Q 008209 487 QYLTVKDNQVVHLHPSNCLD-HKPEWVIYNEYVLTSRNFIRTVTDVRGEWLIDIAPHYYDLSNFPQ 551 (574)
Q Consensus 487 ~y~~~~~~~~~~ihpsS~l~-~~~~~ivy~e~~~t~k~~i~~vt~I~~~wl~~~~~~~~~~~~~~~ 551 (574)
.|+++...+.+++||.|+++ ..|.||+|++++.|+|.|||.++.+.++||.+++||||+..++..
T Consensus 824 ~y~tvk~~~tv~~hp~S~l~~~~P~wvvy~eLv~tske~mr~~~e~e~~Wlie~aphyyk~kdled 889 (902)
T KOG0923|consen 824 HYRTVKHPQTVSIHPNSGLFEQLPRWVVYHELVLTSKEFMRQVIEIEEEWLIEVAPHYYKLKDLED 889 (902)
T ss_pred cceeeccCcceeecCcccccccCCceEEEeehhcChHHHHHHHHhhhhhHHHHhchhhhhhhhccc
Confidence 99999999999999999998 568999999999999999999999999999999999998766543
No 5
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=4.4e-109 Score=942.23 Aligned_cols=537 Identities=35% Similarity=0.614 Sum_probs=489.2
Q ss_pred cccCCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhhCC
Q 008209 5 FCVLLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYG 84 (574)
Q Consensus 5 ~~~~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f~~ 84 (574)
.+..++|+|||||+|+++++.|+.|++|++|||||||||++++|++++++++++..++++|+|+||||+|.+.|++||++
T Consensus 160 ~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmSATid~e~fs~~F~~ 239 (1294)
T PRK11131 160 VSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSRHFNN 239 (1294)
T ss_pred cCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEeeCCCCHHHHHHHcCC
Confidence 34569999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred CCeEEeCCeeeceeEEeecCCc------hhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCC
Q 008209 85 APLMKVPGRLHPVEIFYTQEPE------RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVG 158 (574)
Q Consensus 85 ~~~i~~~gr~~~v~~~y~~~~~------~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~ 158 (574)
+|++.++|+.|||+++|.+... .+++...+..+..++. .+.|+|||||||+++|+.+++.|.+. ...
T Consensus 240 apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~-~~~GdILVFLpg~~EIe~lae~L~~~------~~~ 312 (1294)
T PRK11131 240 APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGR-EGPGDILIFMSGEREIRDTADALNKL------NLR 312 (1294)
T ss_pred CCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhc-CCCCCEEEEcCCHHHHHHHHHHHHhc------CCC
Confidence 9999999999999999987643 3455555555555543 56899999999999999999999862 124
Q ss_pred CeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeee
Q 008209 159 PVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP 238 (574)
Q Consensus 159 ~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~ 238 (574)
...++++||+|++++|.++|++ .|. +||||||||||+|||||+|+||||+|++|+++||+.++++.+...|
T Consensus 313 ~~~VlpLhg~Ls~~eQ~~Vf~~--~g~-------rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~ 383 (1294)
T PRK11131 313 HTEILPLYARLSNSEQNRVFQS--HSG-------RRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEP 383 (1294)
T ss_pred cceEeecccCCCHHHHHHHhcc--cCC-------eeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeee
Confidence 5679999999999999999986 355 9999999999999999999999999999999999999999999999
Q ss_pred ccHhhHHHhcccCCCCCCCeEEeeccccccccccCCCCcchhccCCchhhHHHHhhcCCCCccccCCCCCCcHHHHHHHH
Q 008209 239 ISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRAL 318 (574)
Q Consensus 239 is~~~~~QR~GRaGR~~~G~~~rl~t~~~~~~~l~~~~~pei~~~~l~~~~L~l~~~~~~~~~~~~~l~~P~~~~l~~al 318 (574)
+|+++|.||+|||||.++|+||+||++++| ..+++++.|||+|++|++++|+++++|+.++..|+|+|||+.+++..|+
T Consensus 384 iSkasa~QRaGRAGR~~~G~c~rLyte~d~-~~~~~~~~PEIlR~~L~~viL~lk~lgl~di~~F~fldpP~~~~i~~al 462 (1294)
T PRK11131 384 ISQASANQRKGRCGRVSEGICIRLYSEDDF-LSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGV 462 (1294)
T ss_pred cCHhhHhhhccccCCCCCcEEEEeCCHHHH-HhhhcccCCccccCCHHHHHHHHHHcCCCCcceeeCCCCCCHHHHHHHH
Confidence 999999999999999999999999999999 5799999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCccCC-----CCcChhhhhhccCCCCHHHHHHHHhccCCCCchhhHhHHhhccCCCcccCChhHHHHHHHHHH
Q 008209 319 EVLNYLGALDDD-----GNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAADEAKA 393 (574)
Q Consensus 319 ~~L~~lgald~~-----~~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~~~~~~i~a~ls~~~~f~~~~~~~~~~~~~~~ 393 (574)
+.|..+||||.+ ++||++|+.|++||+||++||||+.|..+||++|+++|||+||++++|.+|.+++++++.++.
T Consensus 463 ~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Lsv~dpf~~p~~~~~~a~~~~~ 542 (1294)
T PRK11131 463 RLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSIQDPRERPMDKQQASDEKHR 542 (1294)
T ss_pred HHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcccCCchhHHHHHHHHH
Confidence 999999999864 579999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCcHHHHHHHHHHHHhC------CCCchhHhhhcCCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCchhHHHH
Q 008209 394 RFGHIDGDHLTLLNVYHAYKQN------NEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSNDFNSRDYYVNI 467 (574)
Q Consensus 394 ~~~~~~sD~l~~l~~~~~~~~~------~~~~~~c~~~~l~~~~l~~~~~ir~qL~~~l~~~~~~~~~~~~~~~~~~~~i 467 (574)
.|.+.+|||++++|+|+.|.+. +..++||++||||+.+|+++.+++.||.++++++|++.++. +.+++.|
T Consensus 543 ~f~~~~sD~lt~ln~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g~~~~~~----~~~~~~i 618 (1294)
T PRK11131 543 RFADKESDFLAFVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSE----PAEYREI 618 (1294)
T ss_pred hhCCCCCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCCCC----cccHHHH
Confidence 9999999999999999999752 12357999999999999999999999999999999876442 2357889
Q ss_pred HHHHHhccccceeeecCCC-cEEEeecCeEEEEcCCCCCC-CCCcEEEEEEecccchhhcccccccCHHHHHhHcCcccc
Q 008209 468 RKAMLAGYFMQVAHLERTG-QYLTVKDNQVVHLHPSNCLD-HKPEWVIYNEYVLTSRNFIRTVTDVRGEWLIDIAPHYYD 545 (574)
Q Consensus 468 ~~~l~~g~~~niA~~~~~~-~y~~~~~~~~~~ihpsS~l~-~~~~~ivy~e~~~t~k~~i~~vt~I~~~wl~~~~~~~~~ 545 (574)
++||++||+.|||++..++ .|.+. .+..++|||+|+|+ .+|+||||+|++.|++.|+|.|+.|+|+||.+++|++++
T Consensus 619 ~~all~G~~~nva~~~~~~~~y~~~-~~~~~~ihP~S~L~~~~p~wvv~~Elv~Tsr~y~r~va~I~p~Wl~~~a~~l~~ 697 (1294)
T PRK11131 619 HTALLTGLLSHIGMKDAEKQEYTGA-RNARFSIFPGSGLFKKPPKWVMVAELVETSRLWGRIAARIEPEWIEPLAQHLIK 697 (1294)
T ss_pred HHHHHhhcHHHHeeccCCCCeEEcc-CCcEEEEcCCccccCCCCCEEEEEeeeccChhhhhhhcccCHHHHHHHHHHhcc
Confidence 9999999999999987764 57755 47789999999997 568999999999999999999999999999999999998
Q ss_pred cc-cCCchhHHHHHHHHHH
Q 008209 546 LS-NFPQCEAKRVLERLYR 563 (574)
Q Consensus 546 ~~-~~~~~~~~~~~~~~~~ 563 (574)
.+ ..|+|+.|++.+.|.|
T Consensus 698 ~~y~ePhw~~~~g~v~a~e 716 (1294)
T PRK11131 698 RSYSEPHWEKAQGAVMATE 716 (1294)
T ss_pred ccCCCCcccccCCeEEEEE
Confidence 77 4688999987765544
No 6
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=5.1e-106 Score=920.58 Aligned_cols=540 Identities=38% Similarity=0.645 Sum_probs=491.3
Q ss_pred ccccCCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhhC
Q 008209 4 CFCVLLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFY 83 (574)
Q Consensus 4 ~~~~~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f~ 83 (574)
+.+..|+|+|||+|+|++++++||.|++|++|||||+|||++++|++++++++++..++++|+|+||||+|.+.|++||+
T Consensus 152 ~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSATld~~~fa~~F~ 231 (1283)
T TIGR01967 152 QVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSATIDPERFSRHFN 231 (1283)
T ss_pred ccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeCCcCHHHHHHHhc
Confidence 34567899999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred CCCeEEeCCeeeceeEEeecCCc------hhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCC
Q 008209 84 GAPLMKVPGRLHPVEIFYTQEPE------RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQV 157 (574)
Q Consensus 84 ~~~~i~~~gr~~~v~~~y~~~~~------~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~ 157 (574)
++|++.++|+.|||+++|.+... .++.+..+..+..++. +..|+|||||||+++|+.+++.|.+.. .
T Consensus 232 ~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~-~~~GdILVFLpg~~EI~~l~~~L~~~~------~ 304 (1283)
T TIGR01967 232 NAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA-EGPGDILIFLPGEREIRDAAEILRKRN------L 304 (1283)
T ss_pred CCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHh-hCCCCEEEeCCCHHHHHHHHHHHHhcC------C
Confidence 99999999999999999986532 2355555555555554 467999999999999999999998631 2
Q ss_pred CCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeee
Q 008209 158 GPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVS 237 (574)
Q Consensus 158 ~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~ 237 (574)
.++.++++||+|++++|.++|++.. . +||||||||||+|||||+|+||||+|+.|.++||+.+|++.+.+.
T Consensus 305 ~~~~VlpLhg~Ls~~eQ~~vf~~~~--~-------rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~ 375 (1283)
T TIGR01967 305 RHTEILPLYARLSNKEQQRVFQPHS--G-------RRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIE 375 (1283)
T ss_pred CCcEEEeccCCCCHHHHHHHhCCCC--C-------ceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCc
Confidence 3578999999999999999998752 3 899999999999999999999999999999999999999999999
Q ss_pred eccHhhHHHhcccCCCCCCCeEEeeccccccccccCCCCcchhccCCchhhHHHHhhcCCCCccccCCCCCCcHHHHHHH
Q 008209 238 PISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRA 317 (574)
Q Consensus 238 ~is~~~~~QR~GRaGR~~~G~~~rl~t~~~~~~~l~~~~~pei~~~~l~~~~L~l~~~~~~~~~~~~~l~~P~~~~l~~a 317 (574)
|||+++|.||+|||||.++|+|||||++++| ..+++++.|||+|++|++++|++++||+.++..|+|+|||+.+++..|
T Consensus 376 ~ISkasa~QRaGRAGR~~~G~cyRLyte~~~-~~~~~~~~PEIlR~~L~~viL~l~~lg~~di~~f~fldpP~~~~i~~A 454 (1283)
T TIGR01967 376 PISQASANQRKGRCGRVAPGICIRLYSEEDF-NSRPEFTDPEILRTNLASVILQMLALRLGDIAAFPFIEAPDPRAIRDG 454 (1283)
T ss_pred cCCHHHHHHHhhhhCCCCCceEEEecCHHHH-HhhhhccCcccccccHHHHHHHHHhcCCCCcccccCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999 579999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCccCCC---CcChhhhhhccCCCCHHHHHHHHhccCCCCchhhHhHHhhccCCCcccCChhHHHHHHHHHHh
Q 008209 318 LEVLNYLGALDDDG---NLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAADEAKAR 394 (574)
Q Consensus 318 l~~L~~lgald~~~---~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~~~~~~i~a~ls~~~~f~~~~~~~~~~~~~~~~ 394 (574)
++.|..+||||++| +||++|+.|++||+||++||||+.|..+||++++++|||+|+++++|..|.+.+++++.++..
T Consensus 455 ~~~L~~LGAld~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~~dp~~~p~~~~~~a~~~~~~ 534 (1283)
T TIGR01967 455 FRLLEELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSIQDPRERPMEKQQAADQAHAR 534 (1283)
T ss_pred HHHHHHCCCCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcCCCcchhHHHHHHHHHH
Confidence 99999999999998 799999999999999999999999999999999999999999999999999988999999999
Q ss_pred hCCCCCcHHHHHHHHHHHHhC------CCCchhHhhhcCCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCchhHHHHH
Q 008209 395 FGHIDGDHLTLLNVYHAYKQN------NEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSNDFNSRDYYVNIR 468 (574)
Q Consensus 395 ~~~~~sD~l~~l~~~~~~~~~------~~~~~~c~~~~l~~~~l~~~~~ir~qL~~~l~~~~~~~~~~~~~~~~~~~~i~ 468 (574)
|.+.+|||++++++|+.|.+. +..+.||++||||+..|+++.++++||.++++++|+...+. +.+.+.++
T Consensus 535 f~~~~sD~l~~L~~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~~~~~~----~~~~~~i~ 610 (1283)
T TIGR01967 535 FKDPRSDFLSRVNLWRHIEEQRQALSANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGLKLNEE----PADYDAIH 610 (1283)
T ss_pred hcCCCCCHHHHHHHHHHHHHhhhhccchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCCCcCCC----CccHHHHH
Confidence 999999999999999999752 12368999999999999999999999999999888765332 22355799
Q ss_pred HHHHhccccceeeecCCCcEEEeecCeEEEEcCCCCCCC-CCcEEEEEEecccchhhcccccccCHHHHHhHcCcccccc
Q 008209 469 KAMLAGYFMQVAHLERTGQYLTVKDNQVVHLHPSNCLDH-KPEWVIYNEYVLTSRNFIRTVTDVRGEWLIDIAPHYYDLS 547 (574)
Q Consensus 469 ~~l~~g~~~niA~~~~~~~y~~~~~~~~~~ihpsS~l~~-~~~~ivy~e~~~t~k~~i~~vt~I~~~wl~~~~~~~~~~~ 547 (574)
+||++||++|||++++.+.|.+ .+|+.+.|||+|+|+. +|+||||+|++.|++.||+.|++|+|+||.+++|++++.+
T Consensus 611 ~~l~~g~~~~iA~~~~~~~y~~-~~g~~~~ihP~S~L~~~~p~wvv~~elv~t~~~~ir~~a~I~p~wl~~~~~~~~~~~ 689 (1283)
T TIGR01967 611 KALLSGLLSQIGMKDEKHEYDG-ARGRKFHIFPGSPLFKKPPKWVMAAELVETSKLYARLVAKIEPEWVEPVAGHLIKKN 689 (1283)
T ss_pred HHHHHhhHHHHheeCCCCcEEe-cCCcEEEECCCccccCCCCCEEEEeeecccchheEeeeccCCHHHHHHHhHHHhEec
Confidence 9999999999999887778985 5578899999999974 5899999999999999999999999999999999999888
Q ss_pred -cCCchhHHHHHHHHHHHH
Q 008209 548 -NFPQCEAKRVLERLYRKR 565 (574)
Q Consensus 548 -~~~~~~~~~~~~~~~~~~ 565 (574)
..++|+.|.+.+.++++.
T Consensus 690 ~~~~~w~~~~g~v~a~~~~ 708 (1283)
T TIGR01967 690 YFEPHWEKKRGQVMAYEKV 708 (1283)
T ss_pred cCceeeccCCCeEEEEEeh
Confidence 678898888777666544
No 7
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.9e-103 Score=865.12 Aligned_cols=524 Identities=43% Similarity=0.702 Sum_probs=475.7
Q ss_pred ccccCCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCC-CccEEEEccCCCHHHHHhhh
Q 008209 4 CFCVLLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRP-DLKLVVMSATLEAEKFQGYF 82 (574)
Q Consensus 4 ~~~~~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~-~~klvlmSATl~~~~~~~~f 82 (574)
+.++.|.|+|||+|+|+|++++||.|++|++|||||||||++++|++|+++++++..++ |+|+|+||||+|.+.|++||
T Consensus 135 ~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~~rfs~~f 214 (845)
T COG1643 135 KVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAERFSAYF 214 (845)
T ss_pred cCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCHHHHHHHc
Confidence 34557999999999999999999999999999999999999999999999999887554 89999999999999999999
Q ss_pred CCCCeEEeCCeeeceeEEeecCCchhH-HHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeE
Q 008209 83 YGAPLMKVPGRLHPVEIFYTQEPERDY-LEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVK 161 (574)
Q Consensus 83 ~~~~~i~~~gr~~~v~~~y~~~~~~~~-~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~ 161 (574)
+++|++.++||.|||+++|.+....++ ++.++..+++++..++.|+|||||||++||+.+++.|++ ..+ ..++.
T Consensus 215 ~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~--~~l---~~~~~ 289 (845)
T COG1643 215 GNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEK--AEL---GDDLE 289 (845)
T ss_pred CCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHh--ccc---cCCcE
Confidence 999999999999999999998888888 999999999999999999999999999999999999987 111 15789
Q ss_pred EEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccH
Q 008209 162 VVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISK 241 (574)
Q Consensus 162 v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~ 241 (574)
|+|+||.|+.++|.++|++.+.|+ ||||+||||||||||||||+||||+|+.|+++||+.+|++.|.+.|||+
T Consensus 290 i~PLy~~L~~~eQ~rvF~p~~~~~-------RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISq 362 (845)
T COG1643 290 ILPLYGALSAEEQVRVFEPAPGGK-------RKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISK 362 (845)
T ss_pred EeeccccCCHHHHHhhcCCCCCCc-------ceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEech
Confidence 999999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhcccCCCCCCCeEEeeccccccccccCCCCcchhccCCchhhHHHHhhcCCC-CccccCCCCCCcHHHHHHHHHH
Q 008209 242 ASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGID-DLVHFDFMDPPAPETLMRALEV 320 (574)
Q Consensus 242 ~~~~QR~GRaGR~~~G~~~rl~t~~~~~~~l~~~~~pei~~~~l~~~~L~l~~~~~~-~~~~~~~l~~P~~~~l~~al~~ 320 (574)
+++.||+|||||++||+|||||++++|+ .|++++.|||+++||++++|++++||++ ++..|+|+|||+..++..|++.
T Consensus 363 AsA~QRaGRAGR~~pGicyRLyse~~~~-~~~~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f~fld~P~~~~i~~A~~~ 441 (845)
T COG1643 363 ASADQRAGRAGRTGPGICYRLYSEEDFL-AFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPFPFLDPPPEAAIQAALTL 441 (845)
T ss_pred hhhhhhccccccCCCceEEEecCHHHHH-hcccCCChhhhhcchHHHHHHHHhcCCCCCcccCccCCCCChHHHHHHHHH
Confidence 9999999999999999999999999995 9999999999999999999999999995 9999999999999999999999
Q ss_pred HHHcCCccCCCCcChhhhhhccCCCCHHHHHHHHhccCCCCchhhHhHHhhccCCC---cccCChhHHH---HHHHHH-H
Q 008209 321 LNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPN---CFVRPREAQK---AADEAK-A 393 (574)
Q Consensus 321 L~~lgald~~~~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~~~~~~i~a~ls~~~---~f~~~~~~~~---~~~~~~-~ 393 (574)
|..+||||.+|.||++|+.|+.||+||++|+||+.|..+||++++++|||+|++++ .|..+.+.++ ....++ .
T Consensus 442 L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~~~~~~~~~~~~~~~l 521 (845)
T COG1643 442 LQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQRTAQDLLKRL 521 (845)
T ss_pred HHHcCCcCCCCCCCHHHHHHHhCCCChHHHHHHHhccccCcHHHHHHHHHhhccCCCcchhccccchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988 6777766555 334444 3
Q ss_pred hhCC---CCCcHHHHHHHHHHHHhCC------CCchhHhhhcCCHHHHHHHHHHHHHHHHHHHH-cCCcccCCCC-----
Q 008209 394 RFGH---IDGDHLTLLNVYHAYKQNN------EDPSWCYDNFVNHRALKSADNVRQQLVRIMAR-FNLKLCSNDF----- 458 (574)
Q Consensus 394 ~~~~---~~sD~l~~l~~~~~~~~~~------~~~~~c~~~~l~~~~l~~~~~ir~qL~~~l~~-~~~~~~~~~~----- 458 (574)
.+.+ ..+||++++++|..|.... ...+||+.++++.++|.++..++.++...... .+........
T Consensus 522 ~~~~~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~ 601 (845)
T COG1643 522 KRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSALAGRILAAAEIDEDEW 601 (845)
T ss_pred HhccCCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhhhcCChhHHHhhHHHHHHHHHhhhccccchhhhcccCcchh
Confidence 3444 6799999999999998755 45689999999999999999999998887766 4433222111
Q ss_pred ----------CCchhHHHHHHHHHhccccceeeecCCC-cEEEeecCeEEEEcCCCC-CC-CCCcEEEEEEecccchhhc
Q 008209 459 ----------NSRDYYVNIRKAMLAGYFMQVAHLERTG-QYLTVKDNQVVHLHPSNC-LD-HKPEWVIYNEYVLTSRNFI 525 (574)
Q Consensus 459 ----------~~~~~~~~i~~~l~~g~~~niA~~~~~~-~y~~~~~~~~~~ihpsS~-l~-~~~~~ivy~e~~~t~k~~i 525 (574)
.++ .|+.+++++++|++.|++.....+ .|.++.++..+.+||+|+ .. ..++|++|++.+.+++.|+
T Consensus 602 ~~~~~~~~~~~~~-~~d~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 680 (845)
T COG1643 602 AAQHLPEHCYSEP-IWDDIRGALAAGRKLNIAQLQLDGRPYVTLSDNTPVFAHPSSVRLGLVLLEWIKYAEFLRTRKGYL 680 (845)
T ss_pred hhhhhhhhhccch-hHHHHhhhhhhheecceeeeeccccccccCCCCceeEecchhHhhcccCcchHHHHHHHHHHHHHH
Confidence 112 578899999999999999988774 489898899999999994 33 4689999999999999999
Q ss_pred c-----------cccccCHHHHHhHcC
Q 008209 526 R-----------TVTDVRGEWLIDIAP 541 (574)
Q Consensus 526 ~-----------~vt~I~~~wl~~~~~ 541 (574)
+ .++.+.++||.+.++
T Consensus 681 ~~~~~~~~~~~~~l~~~~~~wL~~~~~ 707 (845)
T COG1643 681 REGRGERWPDVQTLIELLKLWLKEQVK 707 (845)
T ss_pred hhcccccCcccchHhhhHHHhhhhhcc
Confidence 9 599999999999987
No 8
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-100 Score=802.01 Aligned_cols=535 Identities=38% Similarity=0.616 Sum_probs=473.6
Q ss_pred ccCCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhC----------CCccEEEEccCCCH
Q 008209 6 CVLLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR----------PDLKLVVMSATLEA 75 (574)
Q Consensus 6 ~~~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~----------~~~klvlmSATl~~ 75 (574)
.+.|.|+|||+|+|||++++|..|.+|++|||||||||++++|+|+++|.++...| ..+|+|+||||+-+
T Consensus 347 ~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRV 426 (1172)
T KOG0926|consen 347 GEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRV 426 (1172)
T ss_pred CCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEEe
Confidence 45699999999999999999999999999999999999999999999999987754 37999999999998
Q ss_pred HHHH---hhhC-CCCeEEeCCeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHh
Q 008209 76 EKFQ---GYFY-GAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEIT 151 (574)
Q Consensus 76 ~~~~---~~f~-~~~~i~~~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~ 151 (574)
+.|. ..|. .+|+|.++.|+|||.+||......||+..+.+..+.||...+.|.||||++|+.|++.+++.|++...
T Consensus 427 sDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p 506 (1172)
T KOG0926|consen 427 SDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFP 506 (1172)
T ss_pred cccccCceecCCCCceeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCc
Confidence 8887 3554 47899999999999999999999999999999999999999999999999999999999999998522
Q ss_pred h-----------------------c----------------------------------------C--------------
Q 008209 152 N-----------------------M----------------------------------------G-------------- 154 (574)
Q Consensus 152 ~-----------------------~----------------------------------------~-------------- 154 (574)
. . .
T Consensus 507 ~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~ 586 (1172)
T KOG0926|consen 507 ESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDE 586 (1172)
T ss_pred cccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccch
Confidence 0 0 0
Q ss_pred -------------CCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCccc
Q 008209 155 -------------DQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAK 221 (574)
Q Consensus 155 -------------~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k 221 (574)
....++.|+||||-|+.++|.+||+..+.|. |-||||||+||||+|||+|+||||||..|
T Consensus 587 ~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~-------RLcVVaTNVAETSLTIPgIkYVVD~Gr~K 659 (1172)
T KOG0926|consen 587 SEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGE-------RLCVVATNVAETSLTIPGIKYVVDCGRVK 659 (1172)
T ss_pred hhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCc-------eEEEEeccchhcccccCCeeEEEeccchh
Confidence 0123689999999999999999999999999 99999999999999999999999999999
Q ss_pred ceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEEeeccccccccccCCCCcchhccCCchhhHHHHhhcCCCCcc
Q 008209 222 QKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLV 301 (574)
Q Consensus 222 ~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl~t~~~~~~~l~~~~~pei~~~~l~~~~L~l~~~~~~~~~ 301 (574)
++.||..+|++++...|||++++.||+|||||+|||+|||||+...|++.+.+++.|||++.+.++++|++|+|+++++.
T Consensus 660 ~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~PEIlk~Pve~lvLqMKsMnI~kVv 739 (1172)
T KOG0926|consen 660 ERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDFEEFSLPEILKKPVESLVLQMKSMNIDKVV 739 (1172)
T ss_pred hhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcchhhhccHHHhhCcHHHHHHHHHhcCcccee
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHcCCccCCCCcChhhhhhccCCCCHHHHHHHHhccCCCCchhhHhHHhhccCCCcccCC
Q 008209 302 HFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRP 381 (574)
Q Consensus 302 ~~~~l~~P~~~~l~~al~~L~~lgald~~~~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~~~~~~i~a~ls~~~~f~~~ 381 (574)
+|||.+||...+++.|+..|..|||||.+|.||++|+.||.||++|+++|||+.+.+.+|+.-++.++++||+..+|+..
T Consensus 740 nFPFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lpy~i~lvsaLsv~e~~i~~ 819 (1172)
T KOG0926|consen 740 NFPFPTPPDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLATSDQHNLLPYNIALVSALSVYEVLIVA 819 (1172)
T ss_pred cCCCCCCccHHHHHHHHHHHHHhccccccCCcccccchhcccccChhHHHHHHHHHhhcchhHHHHHHHHHhccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877632
Q ss_pred hh-------------H-------------------HHHHHHHHHhhCCCCCcHHHHHHHHHHHHhCCCCchhHhhhcCCH
Q 008209 382 RE-------------A-------------------QKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNH 429 (574)
Q Consensus 382 ~~-------------~-------------------~~~~~~~~~~~~~~~sD~l~~l~~~~~~~~~~~~~~~c~~~~l~~ 429 (574)
.. . +.....++..|...+||-++++.+...+....+...||..|||..
T Consensus 820 ~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~~l~sd~l~Ll~Av~a~ey~~~~~rfc~~ngLr~ 899 (1172)
T KOG0926|consen 820 ASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFSNLDSDALVLLSAVSAAEYAENGMRFCEANGLRL 899 (1172)
T ss_pred hhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhhhcchhHHhcchHH
Confidence 10 0 011223455677788999999999998877666677999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccc------CCCCCCchhHHHHHHHHHhccccceeeecCCCcEEEeecCeEEEEcCCC
Q 008209 430 RALKSADNVRQQLVRIMARFNLKLC------SNDFNSRDYYVNIRKAMLAGYFMQVAHLERTGQYLTVKDNQVVHLHPSN 503 (574)
Q Consensus 430 ~~l~~~~~ir~qL~~~l~~~~~~~~------~~~~~~~~~~~~i~~~l~~g~~~niA~~~~~~~y~~~~~~~~~~ihpsS 503 (574)
++|.++.++|.||..++...++... ...+........++..+|+||.++||++.+.-.|-+..-+..++||++|
T Consensus 900 Kam~Ev~KLR~QL~~lv~~~~i~~v~~~~d~~l~ppt~~q~~lLrQ~i~Ag~~DrVArk~~~~~y~~~~i~~~~fl~~~s 979 (1172)
T KOG0926|consen 900 KAMEEVRKLRKQLTNLVNHGNIQDVEKSWDLTLKPPTDTQAKLLRQMICAGFADRVARKVDATEYDAAKIQEPVFLHRWS 979 (1172)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCCchHHHHHHHHHHHHHHHHHHHHhccccccchhhhcCceeeeehh
Confidence 9999999999999999875433211 0111222345578899999999999998766567766667789999999
Q ss_pred CCC-CCCcEEEEEEecccchhhcc-cccccCHHHHHhHcCcccccc
Q 008209 504 CLD-HKPEWVIYNEYVLTSRNFIR-TVTDVRGEWLIDIAPHYYDLS 547 (574)
Q Consensus 504 ~l~-~~~~~ivy~e~~~t~k~~i~-~vt~I~~~wl~~~~~~~~~~~ 547 (574)
+|+ ..|+||+|.+++.+...||. .++.|+|+||..+++.++..+
T Consensus 980 vl~~~ape~viY~el~~~~~~~~~~~v~~v~pewl~~~~~slcn~~ 1025 (1172)
T KOG0926|consen 980 VLINSAPELVIYQELLLTNRPYMHGGVTAVRPEWLLNHAKSLCNFS 1025 (1172)
T ss_pred hhhccCccceehhhhhhcCCcccccceEEEchHHHHhhhhhhcccc
Confidence 997 56999999999999876555 599999999999988665433
No 9
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=2.2e-97 Score=815.56 Aligned_cols=529 Identities=34% Similarity=0.563 Sum_probs=468.8
Q ss_pred ccCCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhhCCC
Q 008209 6 CVLLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGA 85 (574)
Q Consensus 6 ~~~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f~~~ 85 (574)
+..|.+.|||+|+|||.|+.|+.+.+++|||+||||||++++|++|.++|.++..+|++|+|+||||+|++.|++||++|
T Consensus 262 s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~dae~fs~YF~~~ 341 (924)
T KOG0920|consen 262 SRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATLDAELFSDYFGGC 341 (924)
T ss_pred CCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeecchHHHHHHhCCC
Confidence 44589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEeCCeeeceeEEeecCC-----------------chh--------------HHHHHHHHHHHHHhcCCCCCEEEEcC
Q 008209 86 PLMKVPGRLHPVEIFYTQEP-----------------ERD--------------YLEAAIRTVVQIHMCEPSGDILVFLT 134 (574)
Q Consensus 86 ~~i~~~gr~~~v~~~y~~~~-----------------~~~--------------~~~~~~~~~~~i~~~~~~g~iLVFl~ 134 (574)
|++.++|+.|||..+|+.+- +.. -.+.....+..|+.....|.||||+|
T Consensus 342 pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLP 421 (924)
T KOG0920|consen 342 PVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLP 421 (924)
T ss_pred ceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcC
Confidence 99999999999998876421 011 11223445566777667999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEE
Q 008209 135 GEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYV 214 (574)
Q Consensus 135 ~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~V 214 (574)
|.++|..+++.|.....- ....++.++|+||.++.++|+.||..++.|. ||||+||||||+|||||||.||
T Consensus 422 G~~eI~~~~~~L~~~~~f--~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~-------RKIIlaTNIAETSITIdDVvyV 492 (924)
T KOG0920|consen 422 GWEEILQLKELLEVNLPF--ADSLKFAILPLHSSIPSEEQQAVFKRPPKGT-------RKIILATNIAETSITIDDVVYV 492 (924)
T ss_pred CHHHHHHHHHHhhhcccc--ccccceEEEeccccCChHHHHHhcCCCCCCc-------chhhhhhhhHhhcccccCeEEE
Confidence 999999999999753221 1124688999999999999999999999999 9999999999999999999999
Q ss_pred EcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEEeeccccccccccCCCCcchhccCCchhhHHHHhh
Q 008209 215 IDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKK 294 (574)
Q Consensus 215 ID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl~t~~~~~~~l~~~~~pei~~~~l~~~~L~l~~ 294 (574)
||+|+.|++.|||..+++++...|+|++++.||+|||||..+|.||+||++..|+..+..+.+|||+|.+|.+++|++|.
T Consensus 493 IDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~~~~~~~~q~PEilR~pL~~l~L~iK~ 572 (924)
T KOG0920|consen 493 IDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRYEKLMLAYQLPEILRTPLEELCLHIKV 572 (924)
T ss_pred EecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhhhhhcccccCChHHHhChHHHhhheeee
Confidence 99999999999999999999999999999999999999999999999999999976666699999999999999999999
Q ss_pred cCCCCcccc--CCCCCCcHHHHHHHHHHHHHcCCccCCCCcChhhhhhccCCCCHHHHHHHHhccCCCCchhhHhHHhhc
Q 008209 295 LGIDDLVHF--DFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAML 372 (574)
Q Consensus 295 ~~~~~~~~~--~~l~~P~~~~l~~al~~L~~lgald~~~~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~~~~~~i~a~l 372 (574)
+++..+..| ..++||+.+++..|+..|..+||+|.+.+||+||+.++.||+||++|||++.|..|+|++++++|||+|
T Consensus 573 l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~LT~LG~~la~lPvd~~igK~ll~g~if~cLdp~l~iaa~L 652 (924)
T KOG0920|consen 573 LEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDESEELTPLGLHLASLPVDVRIGKLLLFGAIFGCLDPALTIAAAL 652 (924)
T ss_pred ccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccchHHHHHHHhCCCccccchhheehhhccccchhhhHHHHh
Confidence 998887766 689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccCChhHHHHHHHHHHhhCCC-CCcHHHHHHHHHHHHhC-----CCCchhHhhhcCCHHHHHHHHHHHHHHHHHH
Q 008209 373 SVPNCFVRPREAQKAADEAKARFGHI-DGDHLTLLNVYHAYKQN-----NEDPSWCYDNFVNHRALKSADNVRQQLVRIM 446 (574)
Q Consensus 373 s~~~~f~~~~~~~~~~~~~~~~~~~~-~sD~l~~l~~~~~~~~~-----~~~~~~c~~~~l~~~~l~~~~~ir~qL~~~l 446 (574)
+.++||+.|.++++.+++.+..|... .|||++.+++|..|... ....+||++|||+..+|+++..++.|+...+
T Consensus 653 s~k~PF~~~~~~~~~~~~~~~~~~~~~~SD~la~~~ay~~w~~~~~~~~~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l 732 (924)
T KOG0920|consen 653 SFKSPFVSPLGKREEADKAKKLLALDSISDHLAVVRAYAGWREILRSGPSAEKDFCEENFLSSNTLQEISSLRVQFLELL 732 (924)
T ss_pred ccCCCcccCCCchhHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHhhccHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988744 59999999999999873 2456899999999999999999999999999
Q ss_pred HHcCCcccCC-----C--C-CCchhHHHHHHHHHhccccceeeecC---C---CcEEEeecCeEEEEcCCCCCC----CC
Q 008209 447 ARFNLKLCSN-----D--F-NSRDYYVNIRKAMLAGYFMQVAHLER---T---GQYLTVKDNQVVHLHPSNCLD----HK 508 (574)
Q Consensus 447 ~~~~~~~~~~-----~--~-~~~~~~~~i~~~l~~g~~~niA~~~~---~---~~y~~~~~~~~~~ihpsS~l~----~~ 508 (574)
.+.|+...+. + . ....+.+.++.++|+|+|||+|+... . -.|.+-.+ ..+.|||+|+.. ..
T Consensus 733 ~~~g~~~~~~~~~~~~~~~n~~s~~~~~iravl~a~lyP~i~~~~~~~~~~~~~~~~~~~~-~~v~i~~~sv~~~~~~~~ 811 (924)
T KOG0920|consen 733 SDIGLIPISSTAALTDSECNHNSQNPELVRAVLCAGLYPNIAFVRRMEPKSKSVTFVTKAD-GRVIIHPSSVNEQSTGFQ 811 (924)
T ss_pred hhcccccCCcccccCchhhhhcCCCHHHHHHHHhccCCCceeeeecccCCcCcceeecCCc-eeEEEecchhhccccccC
Confidence 9998754321 0 1 12345678999999999999999764 2 13433222 469999999985 23
Q ss_pred CcEEEEEEecccch-hhcccccccCHHHHHhHcCccc
Q 008209 509 PEWVIYNEYVLTSR-NFIRTVTDVRGEWLIDIAPHYY 544 (574)
Q Consensus 509 ~~~ivy~e~~~t~k-~~i~~vt~I~~~wl~~~~~~~~ 544 (574)
.+|++|.+.+.|++ .|+|++|.+++-.+..+++..+
T Consensus 812 ~p~l~~~~k~~t~~~~~~rd~T~v~~~~~llfgg~~~ 848 (924)
T KOG0920|consen 812 SPFLVFPEKVKSTRLVSLRDTTSVSSSALLLFGGGIS 848 (924)
T ss_pred CcceEEeeecccCCcceeeecCCCCcHHheeecCCce
Confidence 45999999999998 9999999999999998887554
No 10
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=6.1e-87 Score=748.96 Aligned_cols=494 Identities=29% Similarity=0.450 Sum_probs=422.3
Q ss_pred ccCCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCCHHHHHhhhCC
Q 008209 6 CVLLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLEAEKFQGYFYG 84 (574)
Q Consensus 6 ~~~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~~~~~~~~f~~ 84 (574)
+..++|+|+|+|+|++++.+++.|++|++|||||+|||++++|+++++++++.. .++++|+|+||||++.+.|++||++
T Consensus 88 s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~l~~~l~~ 167 (819)
T TIGR01970 88 SRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGERLSSLLPD 167 (819)
T ss_pred CCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHcCC
Confidence 446899999999999999999999999999999999999999999999988766 5789999999999999999999999
Q ss_pred CCeEEeCCeeeceeEEeecCCchhHHHHHHH-HHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEE
Q 008209 85 APLMKVPGRLHPVEIFYTQEPERDYLEAAIR-TVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVV 163 (574)
Q Consensus 85 ~~~i~~~gr~~~v~~~y~~~~~~~~~~~~~~-~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~ 163 (574)
++++.++|+.|||+++|.+....+++...+. .+..+.. ...|+|||||||+++|+.+++.|.+.+. .++.++
T Consensus 168 ~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~-~~~g~iLVFlpg~~eI~~l~~~L~~~~~------~~~~v~ 240 (819)
T TIGR01970 168 APVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALA-SETGSILVFLPGQAEIRRVQEQLAERLD------SDVLIC 240 (819)
T ss_pred CcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHH-hcCCcEEEEECCHHHHHHHHHHHHhhcC------CCcEEE
Confidence 9999999999999999998766555544333 3333333 4579999999999999999999986331 368899
Q ss_pred EcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhh
Q 008209 164 PLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKAS 243 (574)
Q Consensus 164 ~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~ 243 (574)
++||+|++++|.++|+++++|. +||||||||||+|||||+|+||||+|+.|.+.||+.+|++.|.+.|||+++
T Consensus 241 pLHg~L~~~eq~~~~~~~~~G~-------rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkas 313 (819)
T TIGR01970 241 PLYGELSLAAQDRAIKPDPQGR-------RKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQAS 313 (819)
T ss_pred EecCCCCHHHHHHHHhhcccCC-------eEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHH
Confidence 9999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCCCCCeEEeeccccccccccCCCCcchhccCCchhhHHHHhhcCCCCccccCCCCCCcHHHHHHHHHHHHH
Q 008209 244 AHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNY 323 (574)
Q Consensus 244 ~~QR~GRaGR~~~G~~~rl~t~~~~~~~l~~~~~pei~~~~l~~~~L~l~~~~~~~~~~~~~l~~P~~~~l~~al~~L~~ 323 (574)
|.||+|||||.+||.||+||+++++ ..|.++..|||++++|++++|+++.||+.++..|+|+|||+.+++..|++.|+.
T Consensus 314 a~QR~GRAGR~~~G~cyrL~t~~~~-~~l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~~~l~~P~~~~i~~a~~~L~~ 392 (819)
T TIGR01970 314 ATQRAGRAGRLEPGVCYRLWSEEQH-QRLPAQDEPEILQADLSGLALELAQWGAKDPSDLRWLDAPPSVALAAARQLLQR 392 (819)
T ss_pred HHhhhhhcCCCCCCEEEEeCCHHHH-HhhhcCCCcceeccCcHHHHHHHHHcCCCChhhCCCCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999 689999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCCCcChhhhhhccCCCCHHHHHHHHhccCCCCchhhHhHHhhccCCCcccCChhHHHHHHHHHHhhCCCCCcHH
Q 008209 324 LGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAADEAKARFGHIDGDHL 403 (574)
Q Consensus 324 lgald~~~~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~~~~~~i~a~ls~~~~f~~~~~~~~~~~~~~~~~~~~~sD~l 403 (574)
+||||++|+||++|+.|++||+||++|+||+.|..+||.+++++|||+|++++++- ...+|+.
T Consensus 393 lgald~~~~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~~~~-----------------~~~~d~~ 455 (819)
T TIGR01970 393 LGALDAQGRLTAHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERGLPR-----------------QGGADLM 455 (819)
T ss_pred CCCCCCCCCcCHHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCCCCC-----------------CCcccHH
Confidence 99999999999999999999999999999999999999999999999999998742 1246887
Q ss_pred HHHHHHHHHHhCCCCchhHhhhcCCHHHHHHHHHHHHHHHHHHHHcCCc-ccCCCCCCchhHHHHHHHHHhccccceeee
Q 008209 404 TLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLK-LCSNDFNSRDYYVNIRKAMLAGYFMQVAHL 482 (574)
Q Consensus 404 ~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~ir~qL~~~l~~~~~~-~~~~~~~~~~~~~~i~~~l~~g~~~niA~~ 482 (574)
..+..++... ...| ..+.++.+|+.+.+ +.. ....... . ..+..+++.||+++||++
T Consensus 456 ~~~~~~~~~~-----~~~~----------~~~~~~~~~~~~~~---~~~~~~~~~~~--~--~~~g~lla~a~pdria~~ 513 (819)
T TIGR01970 456 NRLHRLQQGR-----QGRG----------QRAQQLAKKLRRRL---RFSQADSGAIA--S--HALGLLLALAFPDRIAKR 513 (819)
T ss_pred HHHHHHhhcc-----hhhH----------HHHHHHHHHHHHHh---CcCcCCCcccc--c--chHhHHHhhhChHhheec
Confidence 7776664310 1112 23344555554432 221 1000000 0 125667888999999998
Q ss_pred cCC-CcEEEeecCeEEEEcCCCCCCCCCcEEEEEEeccc---chhhcccccccCHHHHHhHcCcccccccCCchhHH
Q 008209 483 ERT-GQYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLT---SRNFIRTVTDVRGEWLIDIAPHYYDLSNFPQCEAK 555 (574)
Q Consensus 483 ~~~-~~y~~~~~~~~~~ihpsS~l~~~~~~ivy~e~~~t---~k~~i~~vt~I~~~wl~~~~~~~~~~~~~~~~~~~ 555 (574)
+++ +.|+ +.+|+.+.+++.|.+.. .+|++..++..+ ....|+.+++|+++|+.+.+++.+..++...|+.+
T Consensus 514 r~~~~~y~-l~~G~~~~l~~~~~l~~-~~~l~~a~~~~~~~~~~~~i~~a~~i~~~~~~~~~~~~~~~~~~~~wd~~ 588 (819)
T TIGR01970 514 RGQPGRYQ-LANGRGAVLSAEDALAR-EPWLVAADLGEGQGKTAARILLAAPVDEALLRQVLPDLVVQVDQVDWDET 588 (819)
T ss_pred cCCCCeEE-CCCCCeeEeCCCCcccC-CCeEEEEEeeccCCccccceeeeccCCHHHHHHHhHHHceEEEEEEEecC
Confidence 765 5687 89999999999999985 699999999744 24679999999999999999988766654445433
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=3.4e-86 Score=744.70 Aligned_cols=483 Identities=31% Similarity=0.462 Sum_probs=414.3
Q ss_pred ccCCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCCHHHHHhhhCC
Q 008209 6 CVLLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLEAEKFQGYFYG 84 (574)
Q Consensus 6 ~~~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~~~~~~~~f~~ 84 (574)
+..++|+|+|+|+|++++..|+.|++|++|||||+|||++++|+++++++++++ .++++|+|+||||++.+.+++||++
T Consensus 91 ~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~~l~~~~~~ 170 (812)
T PRK11664 91 GPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQLLPD 170 (812)
T ss_pred CCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHHHHHHhcCC
Confidence 445899999999999999999999999999999999999999999999988876 5789999999999999999999999
Q ss_pred CCeEEeCCeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEE
Q 008209 85 APLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVP 164 (574)
Q Consensus 85 ~~~i~~~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~ 164 (574)
++++.++|+.|||+++|.+.+..+++...+..++........|+|||||||+++|+.+++.|.+.. ..++.+++
T Consensus 171 ~~~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~------~~~~~v~~ 244 (812)
T PRK11664 171 APVIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRV------ASDVLLCP 244 (812)
T ss_pred CCEEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhc------cCCceEEE
Confidence 999999999999999999877766666544443333333457999999999999999999998632 13578999
Q ss_pred cCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhH
Q 008209 165 LYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASA 244 (574)
Q Consensus 165 lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~ 244 (574)
+||++++++|.++|+++++|+ +||||||||||+|||||+|++|||+|+.|.+.||+.+|++.|.+.|||+++|
T Consensus 245 Lhg~l~~~eq~~~~~~~~~G~-------rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa 317 (812)
T PRK11664 245 LYGALSLAEQQKAILPAPAGR-------RKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASM 317 (812)
T ss_pred eeCCCCHHHHHHHhccccCCC-------eEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhh
Confidence 999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCCCCeEEeeccccccccccCCCCcchhccCCchhhHHHHhhcCCCCccccCCCCCCcHHHHHHHHHHHHHc
Q 008209 245 HQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYL 324 (574)
Q Consensus 245 ~QR~GRaGR~~~G~~~rl~t~~~~~~~l~~~~~pei~~~~l~~~~L~l~~~~~~~~~~~~~l~~P~~~~l~~al~~L~~l 324 (574)
.||+|||||.+||.|||||+++++ ..+.++..|||++++|++++|++++||+.++.+|+|+|||+.+++++|++.|+.+
T Consensus 318 ~QR~GRaGR~~~G~cyrL~t~~~~-~~l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~~~ld~P~~~~~~~A~~~L~~l 396 (812)
T PRK11664 318 TQRAGRAGRLEPGICLHLYSKEQA-ERAAAQSEPEILHSDLSGLLLELLQWGCHDPAQLSWLDQPPAAALAAAKRLLQQL 396 (812)
T ss_pred hhhccccCCCCCcEEEEecCHHHH-hhCccCCCCceeccchHHHHHHHHHcCCCCHHhCCCCCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999999 5799999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCcChhhhhhccCCCCHHHHHHHHhccCCCCch--hhHhHHhhccCCCcccCChhHHHHHHHHHHhhCCCCCcH
Q 008209 325 GALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSN--EILSISAMLSVPNCFVRPREAQKAADEAKARFGHIDGDH 402 (574)
Q Consensus 325 gald~~~~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~~--~~~~i~a~ls~~~~f~~~~~~~~~~~~~~~~~~~~~sD~ 402 (574)
||||++|+||++|+.|++||++|++|+||+.|..++|.. .++.|||+|+.++. . ..+|+
T Consensus 397 gald~~g~lT~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall~e~~~--~-----------------~~~d~ 457 (812)
T PRK11664 397 GALDGQGRLTARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAILEEPPR--S-----------------GSSDL 457 (812)
T ss_pred CCCCCCCCcCHHHHHHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhhccCCC--C-----------------CcccH
Confidence 999999999999999999999999999999999998653 67888888877532 0 13565
Q ss_pred HHHHHHHHHHHhCCCCchhHhhhcCCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCchhHHHHHHHHHhccccceeee
Q 008209 403 LTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSNDFNSRDYYVNIRKAMLAGYFMQVAHL 482 (574)
Q Consensus 403 l~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~ir~qL~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~niA~~ 482 (574)
...+..+. ..|+ ..+.++.+|+.+.. + . . ..+.+..+|+.|||++||++
T Consensus 458 ~~~l~~~~--------~~~~----------~~~~~~~~~~~~~~---~-~---~------~~~~~~~~la~aypdriA~~ 506 (812)
T PRK11664 458 GVALSRKQ--------PHWQ----------QRAQQLLKRLNVRG---G-E---A------DSSLIAPLLALAFPDRIARR 506 (812)
T ss_pred HHHHHHHH--------HHHH----------HHHHHHHHHHHhhc---c-c---C------ChHHHHHHHHHHCHHHHhhh
Confidence 55554332 1232 34455555553311 1 1 0 12347889999999999998
Q ss_pred cCCCcEEEeecCeEEEEcCCCCCCCCCcEEEEEEecccc---hhhcccccccCHHHHHhHcCcccccccCCchh
Q 008209 483 ERTGQYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTS---RNFIRTVTDVRGEWLIDIAPHYYDLSNFPQCE 553 (574)
Q Consensus 483 ~~~~~y~~~~~~~~~~ihpsS~l~~~~~~ivy~e~~~t~---k~~i~~vt~I~~~wl~~~~~~~~~~~~~~~~~ 553 (574)
++.+.+..+.+|+.+.|||+|.|.. ++|+|++|++.++ ...|+.+++|+++||.+++|+.+..++...|+
T Consensus 507 r~~~~~~~l~~G~~a~l~~~~~l~~-~~~lv~a~~~~~~~~~~~ri~~a~~l~~~~l~~~~~~~~~~~~~~~~d 579 (812)
T PRK11664 507 RGQDGRYQLANGMGAMLDADDALSR-HEWLIAPLLLQGSASPDARILLALPLDIDELVQRCPQLVQQSDTVEWD 579 (812)
T ss_pred cCCCCeEEeeCCCeEEECCCCcccC-CCeEEEEEhhccCccccceeeEeeccCHHHHHHHHHHhceeeeEEEEe
Confidence 7663334589999999999999975 7999999997553 35688999999999999999887665544443
No 12
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=1.6e-56 Score=474.82 Aligned_cols=524 Identities=27% Similarity=0.426 Sum_probs=431.5
Q ss_pred CCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhhCCCCeE
Q 008209 9 LGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLM 88 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f~~~~~i 88 (574)
--|.|||.|+|++.+.+ .|..++|+|+||+|||+.++|+++.+++.+....+++++++||||+|.+.|..||+.+|.+
T Consensus 473 g~i~fctvgvllr~~e~--glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatIdTd~f~~~f~~~p~~ 550 (1282)
T KOG0921|consen 473 GSIMFCTVGVLLRMMEN--GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATIDTDLFTNFFSSIPDV 550 (1282)
T ss_pred cceeeeccchhhhhhhh--cccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccchhhhhhhhccccce
Confidence 55899999999999875 4789999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCeeeceeEEeecC--------------------------Cch------------hH----------------HHHHH
Q 008209 89 KVPGRLHPVEIFYTQE--------------------------PER------------DY----------------LEAAI 114 (574)
Q Consensus 89 ~~~gr~~~v~~~y~~~--------------------------~~~------------~~----------------~~~~~ 114 (574)
.+.|++|||..+|... +.+ .+ ....+
T Consensus 551 ~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~ 630 (1282)
T KOG0921|consen 551 TVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLI 630 (1282)
T ss_pred eeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHH
Confidence 9999999987665421 000 00 00111
Q ss_pred HHHHH-HHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCc
Q 008209 115 RTVVQ-IHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGR 193 (574)
Q Consensus 115 ~~~~~-i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~ 193 (574)
+.++. +....-.|-||||+|++.+|..++..|...- .........++|+|+.++..+|.+||++.+.|. .
T Consensus 631 Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~--~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv-------~ 701 (1282)
T KOG0921|consen 631 EALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQ--EFGQANKYEILPLHSQLTSQEQRKVFEPVPEGV-------T 701 (1282)
T ss_pred HHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhh--hhccchhcccccchhhcccHhhhhccCcccccc-------c
Confidence 22221 2111226899999999999999999987632 223345678999999999999999999999999 9
Q ss_pred EEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEEeeccccccccccC
Q 008209 194 KIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQ 273 (574)
Q Consensus 194 kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl~t~~~~~~~l~ 273 (574)
|+|++||++|+++||+++++|||++..+.+.|-....+....+.|.|+-+.+||.||+||.+||.||++.+...| +.+.
T Consensus 702 kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF-~~l~ 780 (1282)
T KOG0921|consen 702 KIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARF-EALE 780 (1282)
T ss_pred ccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHH-HHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 6899
Q ss_pred CCCcchhccCCchhhHHHHhhcCCCCcccc--CCCCCCcHHHHHHHHHHHHHcCCccCCCCcChhhhhhccCCCCHHHHH
Q 008209 274 PQTYPEILRSNLANTVLTLKKLGIDDLVHF--DFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSK 351 (574)
Q Consensus 274 ~~~~pei~~~~l~~~~L~l~~~~~~~~~~~--~~l~~P~~~~l~~al~~L~~lgald~~~~lT~lG~~~~~lpl~p~~~~ 351 (574)
.+..||+.+.++....|..|.+.+..+..| ..+.||+.+++..+...|..++++|.++.+|++|+.++.+|+.|++++
T Consensus 781 ~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~elt~lg~~la~l~iep~~~k 860 (1282)
T KOG0921|consen 781 DHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALDANDELTPLGRMLARLPIEPRIGK 860 (1282)
T ss_pred hcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhhccCcccchhhhhhhccCcccccc
Confidence 999999999999999999998877666655 678999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCchhhHhHHhhccCCCcccCChhHHHHHHHHHHhhC------CCCCcHHHHHHHHHHHHhCCCCchhHhhh
Q 008209 352 MLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAADEAKARFG------HIDGDHLTLLNVYHAYKQNNEDPSWCYDN 425 (574)
Q Consensus 352 ~ll~~~~~~c~~~~~~i~a~ls~~~~f~~~~~~~~~~~~~~~~~~------~~~sD~l~~l~~~~~~~~~~~~~~~c~~~ 425 (574)
|++.+..++|..-++..|+.++...+|..-..........++.|+ +..+||.+.+..+..|......++||.++
T Consensus 861 ~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~q~~~~g~kfsdhva~~~v~q~~r~~~q~ga~~e~efc~r~ 940 (1282)
T KOG0921|consen 861 MMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQRKFAGNKFSDHVAIVSVIQGYREAVQMGAAAEREFCERY 940 (1282)
T ss_pred eeeechhhccchhhhhhhcccccccccccccccccccccchhhccccccccchhhhhhhhhhHHHhhhhhhhhhhHhHhh
Confidence 999999999999999999998887776532211111112223333 33456666666667776666667899999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCcccC-----CCCCC-chhHHHHHHHHHhccccceeeecCCCcEEEeecCeEEEE
Q 008209 426 FVNHRALKSADNVRQQLVRIMARFNLKLCS-----NDFNS-RDYYVNIRKAMLAGYFMQVAHLERTGQYLTVKDNQVVHL 499 (574)
Q Consensus 426 ~l~~~~l~~~~~ir~qL~~~l~~~~~~~~~-----~~~~~-~~~~~~i~~~l~~g~~~niA~~~~~~~y~~~~~~~~~~i 499 (574)
+++.+.++.....+.||...|++++++-.. .+.+. +.+....+..||.++++|+|.+..+.+-+|...+. +.|
T Consensus 941 ~l~~~~~~~t~~a~~ql~d~L~q~~fpe~~~~~~~v~~ng~d~~l~~~~~lL~~~lypn~~~y~ekrkvLtTe~~~-ali 1019 (1282)
T KOG0921|consen 941 SLSNPVLKMTDGARRQLIDVLRQCSFPEDILFDISVNVNGPDRELNLMRSLLVMALYPNVAYYVEKRKVLTTEQSS-ALI 1019 (1282)
T ss_pred hhcchhhhhhhhhHHHHHHHHHhccCccccccceeeccCCCCchhHHHHHHHHhhcCCccceeccceeEEeecchh-hhh
Confidence 999999999999999999999987664321 11221 23344566778889999999998876676655554 567
Q ss_pred cCCCCCC--------CCCcEEEEEEecccchhhcccccccCHHHHHhHcCcccc
Q 008209 500 HPSNCLD--------HKPEWVIYNEYVLTSRNFIRTVTDVRGEWLIDIAPHYYD 545 (574)
Q Consensus 500 hpsS~l~--------~~~~~ivy~e~~~t~k~~i~~vt~I~~~wl~~~~~~~~~ 545 (574)
|-.|++. .+++|+||.|.++|.-.-.+..|.|+|-.|+.++.+-.+
T Consensus 1020 hk~Svncp~S~qdM~fPsPFFVFGEKIRTRAIS~K~MslVsPLQLLLF~SrKVq 1073 (1282)
T KOG0921|consen 1020 HKYSVNCPNSRQEMDFPSPFFVFGEKIRTRAISCKQMSLVSPLQLLLFGSRKVQ 1073 (1282)
T ss_pred hhhcccCCCcccccCCCCceeeechhhhhheecccCccccChHHHhhhhhhhcc
Confidence 7766653 356999999999998888899999999999998876543
No 13
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1e-50 Score=446.43 Aligned_cols=306 Identities=22% Similarity=0.309 Sum_probs=248.9
Q ss_pred CCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCC--CHHHHHhhhCCCC
Q 008209 9 LGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL--EAEKFQGYFYGAP 86 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl--~~~~~~~~f~~~~ 86 (574)
.+|+++|++. .++.|+++++|||||||||+..+|++++++++..... .|+++||||+ +.+.|++||++++
T Consensus 275 ~~Ilv~T~~L------~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~~--rq~ILmSATl~~dv~~l~~~~~~p~ 346 (675)
T PHA02653 275 YGLVFSTHKL------TLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDKI--RSLFLMTATLEDDRDRIKEFFPNPA 346 (675)
T ss_pred CCEEEEeCcc------cccccccCCEEEccccccCccchhHHHHHHHHhhhhc--CEEEEEccCCcHhHHHHHHHhcCCc
Confidence 4689999874 3467899999999999999999999999998765432 4899999999 5678999999999
Q ss_pred eEEeCCee-eceeEEeecCCc-----hhHHHHHHHHHHHHHhc---CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCC
Q 008209 87 LMKVPGRL-HPVEIFYTQEPE-----RDYLEAAIRTVVQIHMC---EPSGDILVFLTGEEEIEDACRKITKEITNMGDQV 157 (574)
Q Consensus 87 ~i~~~gr~-~~v~~~y~~~~~-----~~~~~~~~~~~~~i~~~---~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~ 157 (574)
++.++|+. +||+.+|.+... .++.+.....+...+.. ..+|++|||+||+++|+.+++.|.+..
T Consensus 347 ~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~------- 419 (675)
T PHA02653 347 FVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRL------- 419 (675)
T ss_pred EEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhc-------
Confidence 99999985 999999976432 22333222223333221 246899999999999999999998631
Q ss_pred CCeEEEEcCCCCCHHHHhhhcCCC-CCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeee
Q 008209 158 GPVKVVPLYSTLPPAMQQKIFEPA-PPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLV 236 (574)
Q Consensus 158 ~~~~v~~lhs~l~~~~q~~v~~~~-~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~ 236 (574)
+++.+.++||++++.+| +++.+ ++|+ ++||||||+||||||||||++|||+|+++.+. +..++ .
T Consensus 420 ~~~~v~~LHG~Lsq~eq--~l~~ff~~gk-------~kILVATdIAERGIDIp~V~~VID~G~~k~p~--~~~g~----~ 484 (675)
T PHA02653 420 PIYDFYIIHGKVPNIDE--ILEKVYSSKN-------PSIIISTPYLESSVTIRNATHVYDTGRVYVPE--PFGGK----E 484 (675)
T ss_pred CCceEEeccCCcCHHHH--HHHHHhccCc-------eeEEeccChhhccccccCeeEEEECCCccCCC--cccCc----c
Confidence 35889999999998654 22333 4566 99999999999999999999999999988763 44444 4
Q ss_pred eeccHhhHHHhcccCCCCCCCeEEeeccccccccccCCCCcchhccCCchhhHHHHhhcCCCCccccCCCCCCcHHHHHH
Q 008209 237 SPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMR 316 (574)
Q Consensus 237 ~~is~~~~~QR~GRaGR~~~G~~~rl~t~~~~~~~l~~~~~pei~~~~l~~~~L~l~~~~~~~~~~~~~l~~P~~~~l~~ 316 (574)
.|+|+++|.||+|||||.++|.||+||+++++. +.+++...+|.+++|++++||++.. .+.|+|||+++++.+
T Consensus 485 ~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~~------pI~ri~~~~L~~~vL~lk~~g~~~~-~~~~ldpP~~~~l~~ 557 (675)
T PHA02653 485 MFISKSMRTQRKGRVGRVSPGTYVYFYDLDLLK------PIKRIDSEFLHNYILYAKYFNLTLP-EDLFVIPSNLDRLRK 557 (675)
T ss_pred cccCHHHHHHhccCcCCCCCCeEEEEECHHHhH------HHHHHhHHHHHHHHHHHHHcCCCCc-ccccCCCCCHHHHHH
Confidence 599999999999999999999999999998751 1344444458999999999999654 456999999999999
Q ss_pred HHHHHHHcCCccCCCCcChh--hhhhccCCCCHHHHHHHHhcc
Q 008209 317 ALEVLNYLGALDDDGNLTEM--GEKMSEFPLDPQMSKMLVESP 357 (574)
Q Consensus 317 al~~L~~lgald~~~~lT~l--G~~~~~lpl~p~~~~~ll~~~ 357 (574)
|++.|..+||+|+ +||.+ |+.++-+ +.||+++.|.
T Consensus 558 A~~~L~~lga~~~--~l~~l~~~~~~~~~----~~~k~~~~g~ 594 (675)
T PHA02653 558 TEEYIDSFNISIE--KWYEILSNYYVNML----EYAKIYVKGG 594 (675)
T ss_pred HHHHHHHcCCCch--hhhhhhccccHHHH----HHhHHHhccc
Confidence 9999999998854 89999 9999999 9999999885
No 14
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.9e-33 Score=317.29 Aligned_cols=327 Identities=21% Similarity=0.278 Sum_probs=227.5
Q ss_pred CCCeEEEchHHHHHHHhcCCC-CCCccEEEEecCCC-----CCcchHHHHHHHHHHHhhCCCccEEEEccCC-CHHHHHh
Q 008209 8 LLGGRYLTDGMLLREAMTDPL-LERYKVIVLDEAHE-----RTLATDVLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQG 80 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~~-L~~~~~vIiDE~He-----R~~~~d~ll~~lk~~~~~~~~~klvlmSATl-~~~~~~~ 80 (574)
..+|+++|+|.+...+.+++. +.++++||+||+|. |+...+.++..++. .++++|+|+||||+ |.+.+++
T Consensus 111 ~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~---~~~~~riI~lSATl~n~~~la~ 187 (674)
T PRK01172 111 RYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARY---VNPDARILALSATVSNANELAQ 187 (674)
T ss_pred cCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHh---cCcCCcEEEEeCccCCHHHHHH
Confidence 468999999998888777764 89999999999994 44445555444433 45789999999999 7999999
Q ss_pred hhCCCCeEEeCCeeeceeEE--eecC-----CchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhc
Q 008209 81 YFYGAPLMKVPGRLHPVEIF--YTQE-----PERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNM 153 (574)
Q Consensus 81 ~f~~~~~i~~~gr~~~v~~~--y~~~-----~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~ 153 (574)
|++ ++.+....|+.|+++. |... ...... .....+.... .+++++|||+|++++++.++..|.+.....
T Consensus 188 wl~-~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~-~~~~~i~~~~--~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~ 263 (674)
T PRK01172 188 WLN-ASLIKSNFRPVPLKLGILYRKRLILDGYERSQV-DINSLIKETV--NDGGQVLVFVSSRKNAEDYAEMLIQHFPEF 263 (674)
T ss_pred HhC-CCccCCCCCCCCeEEEEEecCeeeecccccccc-cHHHHHHHHH--hCCCcEEEEeccHHHHHHHHHHHHHhhhhc
Confidence 985 5666667777776642 2111 111000 0111122211 357899999999999999999998754321
Q ss_pred CCC----------------CCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcC
Q 008209 154 GDQ----------------VGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDP 217 (574)
Q Consensus 154 ~~~----------------~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~ 217 (574)
..- .....|..+||+|++++|..+++.|++|. .+|||||+++++|||+|+..+||+
T Consensus 264 ~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~-------i~VLvaT~~la~Gvnipa~~VII~- 335 (674)
T PRK01172 264 NDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRY-------IKVIVATPTLAAGVNLPARLVIVR- 335 (674)
T ss_pred ccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCC-------CeEEEecchhhccCCCcceEEEEc-
Confidence 100 00134788999999999999999999998 999999999999999999988884
Q ss_pred CcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC---CCeEEee-ccccccc---cccCCCCcchhccCCch----
Q 008209 218 GFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ---PGKCFRL-YTEKSFN---NDLQPQTYPEILRSNLA---- 286 (574)
Q Consensus 218 g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~---~G~~~rl-~t~~~~~---~~l~~~~~pei~~~~l~---- 286 (574)
....|+.. ...|+|.+++.||+|||||.| .|.++.+ ++.+.++ ..+.. .|+...+.|.
T Consensus 336 ---~~~~~~~~------~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~--~~~pi~S~l~~~~~ 404 (674)
T PRK01172 336 ---DITRYGNG------GIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSG--EPEPVISYMGSQRK 404 (674)
T ss_pred ---CceEeCCC------CceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcC--CCCceeecCCCccc
Confidence 23445432 235899999999999999998 5766665 3333221 11222 2332222222
Q ss_pred --hhHHHHhhcCC----CCcccc---CCC--CCCc---HHHHHHHHHHHHHcCCccCCC--CcChhhhhhccCCCCHHHH
Q 008209 287 --NTVLTLKKLGI----DDLVHF---DFM--DPPA---PETLMRALEVLNYLGALDDDG--NLTEMGEKMSEFPLDPQMS 350 (574)
Q Consensus 287 --~~~L~l~~~~~----~~~~~~---~~l--~~P~---~~~l~~al~~L~~lgald~~~--~lT~lG~~~~~lpl~p~~~ 350 (574)
..+|.....|. .++.+| .|+ .+++ .+.++.+++.|...|+|+.++ .+|++|++++.+|++|..+
T Consensus 405 ~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~t~lG~~~s~~~l~~~t~ 484 (674)
T PRK01172 405 VRFNTLAAISMGLASSMEDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKGDVTLRATRLGKLTSDLYIDPESA 484 (674)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccCCcEeECHHHHHHHHhCCCHHHH
Confidence 11333344443 344433 344 3322 567899999999999998654 5799999999999999999
Q ss_pred HHHHhccCCC
Q 008209 351 KMLVESPKYN 360 (574)
Q Consensus 351 ~~ll~~~~~~ 360 (574)
+.+..+....
T Consensus 485 ~~~~~~l~~~ 494 (674)
T PRK01172 485 LILKSAFDHD 494 (674)
T ss_pred HHHHHHhhcc
Confidence 9998876543
No 15
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=5.9e-32 Score=307.41 Aligned_cols=328 Identities=22% Similarity=0.304 Sum_probs=231.9
Q ss_pred CCCeEEEchHHHHHHHhcC-CCCCCccEEEEecCC-----CCCcchHHHHHHHHHHHhhCCCccEEEEccCC-CHHHHHh
Q 008209 8 LLGGRYLTDGMLLREAMTD-PLLERYKVIVLDEAH-----ERTLATDVLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQG 80 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~-~~L~~~~~vIiDE~H-----eR~~~~d~ll~~lk~~~~~~~~~klvlmSATl-~~~~~~~ 80 (574)
..+|+|+||+.+...+.+. .++.++++|||||+| +|+...+.++..++. ..++.|+|+||||+ |.+.+++
T Consensus 113 ~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~---~~~~~qii~lSATl~n~~~la~ 189 (737)
T PRK02362 113 DNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRR---LNPDLQVVALSATIGNADELAD 189 (737)
T ss_pred CCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHh---cCCCCcEEEEcccCCCHHHHHH
Confidence 4789999999987777654 468999999999999 566667776666554 45689999999999 7899999
Q ss_pred hhCCCCeEEeCCeeeceeEE--eec-----CCch----hHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHH
Q 008209 81 YFYGAPLMKVPGRLHPVEIF--YTQ-----EPER----DYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKE 149 (574)
Q Consensus 81 ~f~~~~~i~~~gr~~~v~~~--y~~-----~~~~----~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~ 149 (574)
|++ +..+....|+.|+... |.. .... ......+..+...+ ..++++|||||++++++.++..|.+.
T Consensus 190 wl~-~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~sr~~~~~~a~~L~~~ 266 (737)
T PRK02362 190 WLD-AELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTL--EEGGQCLVFVSSRRNAEGFAKRAASA 266 (737)
T ss_pred HhC-CCcccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHH--HcCCCeEEEEeCHHHHHHHHHHHHHH
Confidence 985 3334334444443321 110 0000 00022333344433 36789999999999999999998764
Q ss_pred Hhh----------------c---CCC--------CCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccc
Q 008209 150 ITN----------------M---GDQ--------VGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIA 202 (574)
Q Consensus 150 ~~~----------------~---~~~--------~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ia 202 (574)
... + ... .-...|..+||+|++++|..+++.|++|. .+|+|||+++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~-------i~VLvaT~tl 339 (737)
T PRK02362 267 LKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRL-------IKVISSTPTL 339 (737)
T ss_pred hhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCC-------CeEEEechhh
Confidence 321 0 000 00136889999999999999999999998 9999999999
Q ss_pred cccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC---CCeEEeeccccc-cc---cccCCC
Q 008209 203 ETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ---PGKCFRLYTEKS-FN---NDLQPQ 275 (574)
Q Consensus 203 e~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~---~G~~~rl~t~~~-~~---~~l~~~ 275 (574)
++|||+|++++||+. ...||+..|. .|++..+|.||+|||||.| .|.|+.+..... .. ..+..
T Consensus 340 a~GvnlPa~~VVI~~----~~~yd~~~g~-----~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~- 409 (737)
T PRK02362 340 AAGLNLPARRVIIRD----YRRYDGGAGM-----QPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIW- 409 (737)
T ss_pred hhhcCCCceEEEEec----ceeecCCCCc-----eeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHh-
Confidence 999999999999943 5678876543 5999999999999999988 399999876531 11 11111
Q ss_pred CcchhccCC------chhhHHHHhhcCCC----Ccccc---CCCCCC------cHHHHHHHHHHHHHcCCccCCCC---c
Q 008209 276 TYPEILRSN------LANTVLTLKKLGID----DLVHF---DFMDPP------APETLMRALEVLNYLGALDDDGN---L 333 (574)
Q Consensus 276 ~~pei~~~~------l~~~~L~l~~~~~~----~~~~~---~~l~~P------~~~~l~~al~~L~~lgald~~~~---l 333 (574)
..|+-..+. |...++...+.|.- ++.+| .|+..+ ..+.++.+++.|.+.|+|+.++. +
T Consensus 410 ~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~~ 489 (737)
T PRK02362 410 ADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQTDDTGRLERVVDDVLDFLERNGMIEEDGETLEA 489 (737)
T ss_pred CCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhccchHHHHHHHHHHHHHHHHCCCeeecCCeEeE
Confidence 123333332 44455555555521 22222 333222 34568999999999999987764 8
Q ss_pred ChhhhhhccCCCCHHHHHHHHhccC
Q 008209 334 TEMGEKMSEFPLDPQMSKMLVESPK 358 (574)
Q Consensus 334 T~lG~~~~~lpl~p~~~~~ll~~~~ 358 (574)
|++|++++.++++|..+..+..+..
T Consensus 490 t~lG~~~s~~~l~~~t~~~~~~~l~ 514 (737)
T PRK02362 490 TELGHLVSRLYIDPLSAAEIIDGLE 514 (737)
T ss_pred ChHHHHHHHhcCCHHHHHHHHHHhh
Confidence 9999999999999999999987754
No 16
>PRK00254 ski2-like helicase; Provisional
Probab=99.97 E-value=5.2e-29 Score=282.66 Aligned_cols=322 Identities=18% Similarity=0.177 Sum_probs=214.2
Q ss_pred CCCeEEEchHHHHHHHhcC-CCCCCccEEEEecCC-----CCCcchHHHHHHHHHHHhhCCCccEEEEccCC-CHHHHHh
Q 008209 8 LLGGRYLTDGMLLREAMTD-PLLERYKVIVLDEAH-----ERTLATDVLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQG 80 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~-~~L~~~~~vIiDE~H-----eR~~~~d~ll~~lk~~~~~~~~~klvlmSATl-~~~~~~~ 80 (574)
..+|+++||+.+...+.+. .+++++++||+||+| +|+...+.++.. ...+.|+|+||||+ |.+.+++
T Consensus 114 ~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~------l~~~~qiI~lSATl~n~~~la~ 187 (720)
T PRK00254 114 KYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTH------MLGRAQILGLSATVGNAEELAE 187 (720)
T ss_pred cCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHh------cCcCCcEEEEEccCCCHHHHHH
Confidence 3689999999998777654 478999999999999 344444444332 23578999999999 8999999
Q ss_pred hhCCCCeEEeCCeeecee--EEee-----cCCc-hhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhh
Q 008209 81 YFYGAPLMKVPGRLHPVE--IFYT-----QEPE-RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITN 152 (574)
Q Consensus 81 ~f~~~~~i~~~gr~~~v~--~~y~-----~~~~-~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~ 152 (574)
|++ ++.+....|+.|+. +++. .... ..+.......+.+.. ..++++|||++++++++.++..|.+.+..
T Consensus 188 wl~-~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~vLVF~~sr~~~~~~a~~l~~~~~~ 264 (720)
T PRK00254 188 WLN-AELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAV--KKGKGALVFVNTRRSAEKEALELAKKIKR 264 (720)
T ss_pred HhC-CccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHH--HhCCCEEEEEcChHHHHHHHHHHHHHHHH
Confidence 986 34444445554442 1111 1111 111122222233333 24789999999999999988877653221
Q ss_pred cC----------------CC--------CCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccC
Q 008209 153 MG----------------DQ--------VGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTI 208 (574)
Q Consensus 153 ~~----------------~~--------~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~giti 208 (574)
.. .. .....|..+||+|++++|..+++.|++|. .+|+|||+++++|||+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~-------i~VLvaT~tLa~Gvni 337 (720)
T PRK00254 265 FLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGL-------IKVITATPTLSAGINL 337 (720)
T ss_pred hcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCC-------CeEEEeCcHHhhhcCC
Confidence 00 00 01235899999999999999999999998 9999999999999999
Q ss_pred CCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC---CCeEEeeccccc----cccccCCCCcchhc
Q 008209 209 DGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ---PGKCFRLYTEKS----FNNDLQPQTYPEIL 281 (574)
Q Consensus 209 p~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~---~G~~~rl~t~~~----~~~~l~~~~~pei~ 281 (574)
|++++||.. ...|+ ..+ ..+.+..++.||+|||||.+ .|.++.+.+... + ..+.. ..||-+
T Consensus 338 pa~~vVI~~----~~~~~-~~~-----~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~-~~~~~-~~pe~l 405 (720)
T PRK00254 338 PAFRVIIRD----TKRYS-NFG-----WEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLM-ERYIF-GKPEKL 405 (720)
T ss_pred CceEEEECC----ceEcC-CCC-----ceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHH-HHHHh-CCchhh
Confidence 999999943 34554 222 23567889999999999976 589998876433 2 11211 112222
Q ss_pred cC------CchhhHHHHhhcC-CCCccc--------cCCCCCCc----HHHHHHHHHHHHHcCCccCC--C--CcChhhh
Q 008209 282 RS------NLANTVLTLKKLG-IDDLVH--------FDFMDPPA----PETLMRALEVLNYLGALDDD--G--NLTEMGE 338 (574)
Q Consensus 282 ~~------~l~~~~L~l~~~~-~~~~~~--------~~~l~~P~----~~~l~~al~~L~~lgald~~--~--~lT~lG~ 338 (574)
.. .|...++.....| +.+..+ |.+...|+ .+.++.+++.|.+.|+|+.+ + .+|++|+
T Consensus 406 ~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~~~~~~~~~~v~~~l~~L~~~~~i~~~~~~~~~~t~lG~ 485 (720)
T PRK00254 406 FSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAHQRKDLYSLEEKAKEIVYFLLENEFIDIDLEDRFIPLPLGI 485 (720)
T ss_pred hccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHhhcChHhHHHHHHHHHHHHHHCCCeEEcCCCCEeeChHHH
Confidence 11 1223334444333 222211 11222233 35677889999999999643 3 4799999
Q ss_pred hhccCCCCHHHHHHHHhcc
Q 008209 339 KMSEFPLDPQMSKMLVESP 357 (574)
Q Consensus 339 ~~~~lpl~p~~~~~ll~~~ 357 (574)
+++.++++|..++++..+.
T Consensus 486 ~~s~~~i~~~t~~~~~~~l 504 (720)
T PRK00254 486 RTSQLYIDPLTAKKFKDAF 504 (720)
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 9999999999999987664
No 17
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=2.5e-29 Score=263.50 Aligned_cols=226 Identities=19% Similarity=0.268 Sum_probs=177.5
Q ss_pred cCCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHhh-CCCccEEEEccCCC--HHHHHhhh
Q 008209 7 VLLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLKN-RPDLKLVVMSATLE--AEKFQGYF 82 (574)
Q Consensus 7 ~~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~-~~~~klvlmSATl~--~~~~~~~f 82 (574)
.+-+|+++|||+|++++.... .|++++++|+|||| |+++++|--.+-+.+-+. +++.|.++.|||.. +..|++-|
T Consensus 214 ~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD-rMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~f 292 (519)
T KOG0331|consen 214 RGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD-RMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDF 292 (519)
T ss_pred cCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH-hhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHH
Confidence 357899999999999998765 69999999999999 899999876666655555 56668999999995 56666544
Q ss_pred CCCCe-EEeCCee-----eceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCC
Q 008209 83 YGAPL-MKVPGRL-----HPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQ 156 (574)
Q Consensus 83 ~~~~~-i~~~gr~-----~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~ 156 (574)
.+.|+ +.+.+.. +.+...-.... +.-....+..++..+....++++||||.++.+++++.+.+..
T Consensus 293 l~~~~~i~ig~~~~~~a~~~i~qive~~~-~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~-------- 363 (519)
T KOG0331|consen 293 LNNPIQINVGNKKELKANHNIRQIVEVCD-ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRR-------- 363 (519)
T ss_pred hcCceEEEecchhhhhhhcchhhhhhhcC-HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHh--------
Confidence 33333 3332221 11111111111 111222334444444456789999999999999999999986
Q ss_pred CCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeee
Q 008209 157 VGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLV 236 (574)
Q Consensus 157 ~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~ 236 (574)
..+.+.++||..++.+|..+++.|++|. ..|+||||+|++|+|||+|++||++.+
T Consensus 364 -~~~~a~~iHGd~sQ~eR~~~L~~FreG~-------~~vLVATdVAaRGLDi~dV~lVInydf----------------- 418 (519)
T KOG0331|consen 364 -KGWPAVAIHGDKSQSERDWVLKGFREGK-------SPVLVATDVAARGLDVPDVDLVINYDF----------------- 418 (519)
T ss_pred -cCcceeeecccccHHHHHHHHHhcccCC-------cceEEEcccccccCCCccccEEEeCCC-----------------
Confidence 4588999999999999999999999999 999999999999999999999999988
Q ss_pred eeccHhhHHHhcccCCCCC-CCeEEeecccccc
Q 008209 237 SPISKASAHQRSGRAGRTQ-PGKCFRLYTEKSF 268 (574)
Q Consensus 237 ~~is~~~~~QR~GRaGR~~-~G~~~rl~t~~~~ 268 (574)
|-+.++|+||.||+||.+ .|..|.+|+....
T Consensus 419 -P~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~ 450 (519)
T KOG0331|consen 419 -PNNVEDYVHRIGRTGRAGKKGTAITFFTSDNA 450 (519)
T ss_pred -CCCHHHHHhhcCccccCCCCceEEEEEeHHHH
Confidence 999999999999999966 5999999998776
No 18
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=8.1e-30 Score=251.61 Aligned_cols=225 Identities=21% Similarity=0.223 Sum_probs=181.7
Q ss_pred cccCCCeEEEchHHHHHHHhcCC--CCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCC--CHHHHHh
Q 008209 5 FCVLLGGRYLTDGMLLREAMTDP--LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL--EAEKFQG 80 (574)
Q Consensus 5 ~~~~~~I~~~T~g~Ll~~l~~~~--~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl--~~~~~~~ 80 (574)
-+...+|+|+|||.|.+++.+.. .|..++++|+|||+ |-++.||.-.+-+.+-..+.+.|.+++|||| .+.++..
T Consensus 176 L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD-rlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~r 254 (476)
T KOG0330|consen 176 LSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD-RLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQR 254 (476)
T ss_pred hhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH-hhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHh
Confidence 34568999999999999998544 58999999999999 8899998765544444466789999999999 4666664
Q ss_pred hhCCCCe-EEeCCeeec---eeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCC
Q 008209 81 YFYGAPL-MKVPGRLHP---VEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQ 156 (574)
Q Consensus 81 ~f~~~~~-i~~~gr~~~---v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~ 156 (574)
---+.|+ +.++.+... +..+|+..+..+... .++++.....++.+|||+++....+.++-.|..
T Consensus 255 asl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~----yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~-------- 322 (476)
T KOG0330|consen 255 ASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDT----YLVYLLNELAGNSVIVFCNTCNTTRFLALLLRN-------- 322 (476)
T ss_pred hccCCCeEEeccchhcchHHhhhheEeccccccch----hHHHHHHhhcCCcEEEEEeccchHHHHHHHHHh--------
Confidence 4333343 444443322 445666555433322 244444445689999999999999999999986
Q ss_pred CCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeee
Q 008209 157 VGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLV 236 (574)
Q Consensus 157 ~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~ 236 (574)
.++..++|||.|++..|..+|+.|++|. +.|++||++|++|+|||.|++|||+++
T Consensus 323 -lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~-------r~iLv~TDVaSRGLDip~Vd~VVNyDi----------------- 377 (476)
T KOG0330|consen 323 -LGFQAIPLHGQMSQSKRLGALNKFKAGA-------RSILVCTDVASRGLDIPHVDVVVNYDI----------------- 377 (476)
T ss_pred -cCcceecccchhhHHHHHHHHHHHhccC-------CcEEEecchhcccCCCCCceEEEecCC-----------------
Confidence 6789999999999999999999999999 999999999999999999999999998
Q ss_pred eeccHhhHHHhcccCCCCC-CCeEEeecccccc
Q 008209 237 SPISKASAHQRSGRAGRTQ-PGKCFRLYTEKSF 268 (574)
Q Consensus 237 ~~is~~~~~QR~GRaGR~~-~G~~~rl~t~~~~ 268 (574)
|.+-.+|+||+||+||.| +|..+.|.|..+.
T Consensus 378 -P~~skDYIHRvGRtaRaGrsG~~ItlVtqyDv 409 (476)
T KOG0330|consen 378 -PTHSKDYIHRVGRTARAGRSGKAITLVTQYDV 409 (476)
T ss_pred -CCcHHHHHHHcccccccCCCcceEEEEehhhh
Confidence 889999999999999999 5999999998544
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.96 E-value=1.4e-28 Score=266.27 Aligned_cols=221 Identities=18% Similarity=0.240 Sum_probs=170.9
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCC--HHHHHhhhC
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLE--AEKFQGYFY 83 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~--~~~~~~~f~ 83 (574)
+.+|+|+|||+|++++.... .++++++||+||+|. .++..+.-. ++.++. ..++.|++++|||+. ...+...+.
T Consensus 123 ~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~-~l~~g~~~~-l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~ 200 (460)
T PRK11776 123 GAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADR-MLDMGFQDA-IDAIIRQAPARRQTLLFSATYPEGIAAISQRFQ 200 (460)
T ss_pred CCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHH-HhCcCcHHH-HHHHHHhCCcccEEEEEEecCcHHHHHHHHHhc
Confidence 57899999999999997654 589999999999993 344433322 233333 455789999999995 455555544
Q ss_pred CCC-eEEeCCe--eeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCe
Q 008209 84 GAP-LMKVPGR--LHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPV 160 (574)
Q Consensus 84 ~~~-~i~~~gr--~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~ 160 (574)
..| .+.+... ...++.+|...+..+... .+..+.....++++||||+++++++.+++.|.+ .++
T Consensus 201 ~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~----~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~---------~~~ 267 (460)
T PRK11776 201 RDPVEVKVESTHDLPAIEQRFYEVSPDERLP----ALQRLLLHHQPESCVVFCNTKKECQEVADALNA---------QGF 267 (460)
T ss_pred CCCEEEEECcCCCCCCeeEEEEEeCcHHHHH----HHHHHHHhcCCCceEEEECCHHHHHHHHHHHHh---------CCC
Confidence 333 3444332 222555555444444332 333344445678899999999999999999976 467
Q ss_pred EEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeecc
Q 008209 161 KVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPIS 240 (574)
Q Consensus 161 ~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is 240 (574)
.+..+||++++.+|..+++.|++|. .+|+|||+++++|||||++++||++|+ |.+
T Consensus 268 ~v~~~hg~~~~~eR~~~l~~F~~g~-------~~vLVaTdv~~rGiDi~~v~~VI~~d~------------------p~~ 322 (460)
T PRK11776 268 SALALHGDLEQRDRDQVLVRFANRS-------CSVLVATDVAARGLDIKALEAVINYEL------------------ARD 322 (460)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHcCC-------CcEEEEecccccccchhcCCeEEEecC------------------CCC
Confidence 8999999999999999999999998 999999999999999999999999987 888
Q ss_pred HhhHHHhcccCCCCC-CCeEEeecccccc
Q 008209 241 KASAHQRSGRAGRTQ-PGKCFRLYTEKSF 268 (574)
Q Consensus 241 ~~~~~QR~GRaGR~~-~G~~~rl~t~~~~ 268 (574)
..+|.||+|||||.+ .|.||.+++..+.
T Consensus 323 ~~~yiqR~GRtGR~g~~G~ai~l~~~~e~ 351 (460)
T PRK11776 323 PEVHVHRIGRTGRAGSKGLALSLVAPEEM 351 (460)
T ss_pred HhHhhhhcccccCCCCcceEEEEEchhHH
Confidence 999999999999998 4999999987654
No 20
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.96 E-value=3.5e-28 Score=249.93 Aligned_cols=334 Identities=21% Similarity=0.231 Sum_probs=241.2
Q ss_pred cccCCCeEEEchHHHHHHHhcCCCCCCccEEEEecCC-----CCCcchHHHHHHHHHHHhhCCCccEEEEccCC-CHHHH
Q 008209 5 FCVLLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAH-----ERTLATDVLFGLLKEVLKNRPDLKLVVMSATL-EAEKF 78 (574)
Q Consensus 5 ~~~~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~H-----eR~~~~d~ll~~lk~~~~~~~~~klvlmSATl-~~~~~ 78 (574)
.++..+|+++|..=+=..|.....|.++++|||||+| ||+...|-+++.||. ..|+.|+|.+|||+ |++.+
T Consensus 312 t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~---l~~~AQ~i~LSATVgNp~el 388 (830)
T COG1202 312 TSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRY---LFPGAQFIYLSATVGNPEEL 388 (830)
T ss_pred CCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhcccchhhHHHHHHH---hCCCCeEEEEEeecCChHHH
Confidence 4556899999986655555566789999999999999 999999999999988 46789999999999 89999
Q ss_pred HhhhCCCCeEEeCCeeeceeEEeecCC-chhHHHHHHHHHHH-----HHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhh
Q 008209 79 QGYFYGAPLMKVPGRLHPVEIFYTQEP-ERDYLEAAIRTVVQ-----IHMCEPSGDILVFLTGEEEIEDACRKITKEITN 152 (574)
Q Consensus 79 ~~~f~~~~~i~~~gr~~~v~~~y~~~~-~~~~~~~~~~~~~~-----i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~ 152 (574)
++++ ++..+..+.|+.|++-|..... ..+... .+..+.. .....-.|+.|||.+|++.++.++..|..
T Consensus 389 A~~l-~a~lV~y~~RPVplErHlvf~~~e~eK~~-ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~---- 462 (830)
T COG1202 389 AKKL-GAKLVLYDERPVPLERHLVFARNESEKWD-IIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTG---- 462 (830)
T ss_pred HHHh-CCeeEeecCCCCChhHeeeeecCchHHHH-HHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhc----
Confidence 9999 5888889999999876654433 222222 2222221 11123379999999999999999999975
Q ss_pred cCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcc
Q 008209 153 MGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVE 232 (574)
Q Consensus 153 ~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~ 232 (574)
.++...|+|+||+..+|+.+...|..+. ..+||+|..++.|||+|.-.+|.++=.
T Consensus 463 -----kG~~a~pYHaGL~y~eRk~vE~~F~~q~-------l~~VVTTAAL~AGVDFPASQVIFEsLa------------- 517 (830)
T COG1202 463 -----KGLKAAPYHAGLPYKERKSVERAFAAQE-------LAAVVTTAALAAGVDFPASQVIFESLA------------- 517 (830)
T ss_pred -----CCcccccccCCCcHHHHHHHHHHHhcCC-------cceEeehhhhhcCCCCchHHHHHHHHH-------------
Confidence 5788999999999999999999999888 999999999999999997666664432
Q ss_pred eeeeeeccHhhHHHhcccCCCCC---CCeEEeeccc-cccccccCCC----------CcchhccCC------chhhHHHH
Q 008209 233 SLLVSPISKASAHQRSGRAGRTQ---PGKCFRLYTE-KSFNNDLQPQ----------TYPEILRSN------LANTVLTL 292 (574)
Q Consensus 233 ~l~~~~is~~~~~QR~GRaGR~~---~G~~~rl~t~-~~~~~~l~~~----------~~pei~~~~------l~~~~L~l 292 (574)
+-..|.|..++.||.|||||++ .|++|.+.-. ..|...|.+. ..||-.... ++++ |.
T Consensus 518 -MG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~v-LA- 594 (830)
T COG1202 518 -MGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENV-LA- 594 (830)
T ss_pred -cccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHH-HH-
Confidence 2356999999999999999998 6888888443 2232222221 122211111 1222 21
Q ss_pred hhcCCCCc----cccC--CCCCCcHHHHHHHHHHHHHcCCccCCC---CcChhhhhhccCCCCHHHHHHHHhccCCCCch
Q 008209 293 KKLGIDDL----VHFD--FMDPPAPETLMRALEVLNYLGALDDDG---NLTEMGEKMSEFPLDPQMSKMLVESPKYNCSN 363 (574)
Q Consensus 293 ~~~~~~~~----~~~~--~l~~P~~~~l~~al~~L~~lgald~~~---~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~~ 363 (574)
..|+.+- ...+ .+-+ .-..+.++..|+..|+|+.+| ++|+.|+.++...+.|.-|-.|-.+. .. ..
T Consensus 595 -~~~v~~s~~~i~~v~~~~~g~--~~~~~k~l~~Lee~g~i~~~G~~v~~T~yGrava~~Fl~p~~a~~Ir~~v-~~-~~ 669 (830)
T COG1202 595 -SAGVTNSLSVIERVNSLMLGA--AFDPKKALSKLEEYGMIKKKGNIVRPTPYGRAVAMSFLGPSEAEFIREGV-LA-SM 669 (830)
T ss_pred -HhhhcCcHHHHhhcChhhccc--cCCHHHHHHHHHhcCCeeccCCEeeeccccceeEEeecCchHHHHHHHhh-hc-cC
Confidence 2222111 1110 1110 112567899999999999887 58999999999999999999998875 22 23
Q ss_pred hhHhHHhhccC-CCcccC
Q 008209 364 EILSISAMLSV-PNCFVR 380 (574)
Q Consensus 364 ~~~~i~a~ls~-~~~f~~ 380 (574)
.-+.|++.|.- .+.++.
T Consensus 670 ~pl~i~~~l~pfE~ayls 687 (830)
T COG1202 670 DPLRIAAELEPFENAYLS 687 (830)
T ss_pred ChHhHhhccccccccccC
Confidence 44566666544 444443
No 21
>PTZ00110 helicase; Provisional
Probab=99.96 E-value=3.4e-28 Score=266.78 Aligned_cols=224 Identities=20% Similarity=0.250 Sum_probs=167.8
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCC--HHHHHhhh-C
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE--AEKFQGYF-Y 83 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~--~~~~~~~f-~ 83 (574)
+.+|+|+|||+|++.+..+. .|.++++||||||| |.++.++...+.+.+...+++.|++++|||+. .+.+++.+ .
T Consensus 253 ~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd-~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~ 331 (545)
T PTZ00110 253 GVEILIACPGRLIDFLESNVTNLRRVTYLVLDEAD-RMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCK 331 (545)
T ss_pred CCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHH-hhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhc
Confidence 46899999999999997654 58999999999999 56666655444444334668899999999995 45555544 3
Q ss_pred CCCe-EEeCCe----eeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCC
Q 008209 84 GAPL-MKVPGR----LHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVG 158 (574)
Q Consensus 84 ~~~~-i~~~gr----~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~ 158 (574)
..++ +.+... ...+...+......+.... +..++.... ..++++||||+++++++.+++.|.. .
T Consensus 332 ~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~-L~~ll~~~~-~~~~k~LIF~~t~~~a~~l~~~L~~---------~ 400 (545)
T PTZ00110 332 EEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGK-LKMLLQRIM-RDGDKILIFVETKKGADFLTKELRL---------D 400 (545)
T ss_pred cCCEEEEECCCccccCCCeeEEEEEEechhHHHH-HHHHHHHhc-ccCCeEEEEecChHHHHHHHHHHHH---------c
Confidence 3343 222111 1112222211112222222 222222221 2578999999999999999999975 4
Q ss_pred CeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeee
Q 008209 159 PVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP 238 (574)
Q Consensus 159 ~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~ 238 (574)
++.+..+||++++++|..+++.|++|. .+|||||+++++|||||+|++||++++ |
T Consensus 401 g~~~~~ihg~~~~~eR~~il~~F~~G~-------~~ILVaTdv~~rGIDi~~v~~VI~~d~------------------P 455 (545)
T PTZ00110 401 GWPALCIHGDKKQEERTWVLNEFKTGK-------SPIMIATDVASRGLDVKDVKYVINFDF------------------P 455 (545)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhcCC-------CcEEEEcchhhcCCCcccCCEEEEeCC------------------C
Confidence 577899999999999999999999998 999999999999999999999999887 8
Q ss_pred ccHhhHHHhcccCCCCC-CCeEEeecccccc
Q 008209 239 ISKASAHQRSGRAGRTQ-PGKCFRLYTEKSF 268 (574)
Q Consensus 239 is~~~~~QR~GRaGR~~-~G~~~rl~t~~~~ 268 (574)
-+.++|.||+|||||.+ +|.||.++++.+.
T Consensus 456 ~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~ 486 (545)
T PTZ00110 456 NQIEDYVHRIGRTGRAGAKGASYTFLTPDKY 486 (545)
T ss_pred CCHHHHHHHhcccccCCCCceEEEEECcchH
Confidence 89999999999999998 5999999998654
No 22
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.3e-27 Score=259.94 Aligned_cols=221 Identities=23% Similarity=0.340 Sum_probs=178.7
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCH--HHHH-hhhC
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA--EKFQ-GYFY 83 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~--~~~~-~~f~ 83 (574)
+.+|+|+|||+|++++.... .++++.++|+||++ |.++..|.-.+-+.+-...++.|++++|||++. ..++ .|+.
T Consensus 150 ~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD-rmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~ 228 (513)
T COG0513 150 GVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD-RMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLN 228 (513)
T ss_pred CCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh-hhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcc
Confidence 58999999999999998774 59999999999999 677776655544444445568999999999964 3333 4555
Q ss_pred CCCeEEeCCe-----eeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCC
Q 008209 84 GAPLMKVPGR-----LHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVG 158 (574)
Q Consensus 84 ~~~~i~~~gr-----~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~ 158 (574)
++..+.+... .-.++.+|......+ .....+..+......+++|||++++..++.++..|.. .
T Consensus 229 ~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~---~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~---------~ 296 (513)
T COG0513 229 DPVEIEVSVEKLERTLKKIKQFYLEVESEE---EKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRK---------R 296 (513)
T ss_pred CCcEEEEccccccccccCceEEEEEeCCHH---HHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHH---------C
Confidence 4445555522 233667777666544 2233455555555667899999999999999999986 5
Q ss_pred CeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeee
Q 008209 159 PVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP 238 (574)
Q Consensus 159 ~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~ 238 (574)
++.+..+||+|++++|.++++.|.+|. .+|+|||++|++|||||+|.+|||+++ |
T Consensus 297 g~~~~~lhG~l~q~~R~~~l~~F~~g~-------~~vLVaTDvaaRGiDi~~v~~VinyD~------------------p 351 (513)
T COG0513 297 GFKVAALHGDLPQEERDRALEKFKDGE-------LRVLVATDVAARGLDIPDVSHVINYDL------------------P 351 (513)
T ss_pred CCeEEEecCCCCHHHHHHHHHHHHcCC-------CCEEEEechhhccCCccccceeEEccC------------------C
Confidence 689999999999999999999999998 999999999999999999999999888 8
Q ss_pred ccHhhHHHhcccCCCCCC-CeEEeecccc
Q 008209 239 ISKASAHQRSGRAGRTQP-GKCFRLYTEK 266 (574)
Q Consensus 239 is~~~~~QR~GRaGR~~~-G~~~rl~t~~ 266 (574)
.+..+|.||+||+||.|. |.++.++++.
T Consensus 352 ~~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 352 LDPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred CCHHHheeccCccccCCCCCeEEEEeCcH
Confidence 899999999999999985 9999999863
No 23
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.95 E-value=4.3e-27 Score=253.89 Aligned_cols=221 Identities=18% Similarity=0.232 Sum_probs=165.7
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCCH--HHHH-hhh
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLEA--EKFQ-GYF 82 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~~--~~~~-~~f 82 (574)
..+|+|+|||+|++.+.... .++++++|||||+| +.++..+.- .++.++. ...+.|++++|||+.. ..+. .++
T Consensus 125 ~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah-~ll~~~~~~-~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~ 202 (456)
T PRK10590 125 GVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD-RMLDMGFIH-DIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLL 202 (456)
T ss_pred CCcEEEEChHHHHHHHHcCCcccccceEEEeecHH-HHhccccHH-HHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHc
Confidence 46899999999999887665 59999999999999 344443332 2333333 4456789999999953 4454 445
Q ss_pred CCCCeEEeCCeee---ceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCC
Q 008209 83 YGAPLMKVPGRLH---PVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGP 159 (574)
Q Consensus 83 ~~~~~i~~~gr~~---~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~ 159 (574)
.+...+.+..+.. .+..++......+.. ..+..+.......++|||++++.+++.+++.|.+ .+
T Consensus 203 ~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~----~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~---------~g 269 (456)
T PRK10590 203 HNPLEIEVARRNTASEQVTQHVHFVDKKRKR----ELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNK---------DG 269 (456)
T ss_pred CCCeEEEEecccccccceeEEEEEcCHHHHH----HHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHH---------CC
Confidence 4444444433221 133333322222221 1223333334567999999999999999999975 46
Q ss_pred eEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeec
Q 008209 160 VKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPI 239 (574)
Q Consensus 160 ~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~i 239 (574)
+.+..+||++++++|..+++.|++|. .+|+|||+++++|||||+|++||++++ |.
T Consensus 270 ~~~~~lhg~~~~~~R~~~l~~F~~g~-------~~iLVaTdv~~rGiDip~v~~VI~~~~------------------P~ 324 (456)
T PRK10590 270 IRSAAIHGNKSQGARTRALADFKSGD-------IRVLVATDIAARGLDIEELPHVVNYEL------------------PN 324 (456)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-------CcEEEEccHHhcCCCcccCCEEEEeCC------------------CC
Confidence 78899999999999999999999998 999999999999999999999999887 88
Q ss_pred cHhhHHHhcccCCCCCC-CeEEeecccccc
Q 008209 240 SKASAHQRSGRAGRTQP-GKCFRLYTEKSF 268 (574)
Q Consensus 240 s~~~~~QR~GRaGR~~~-G~~~rl~t~~~~ 268 (574)
+..+|.||+|||||.+. |.|+.+++..+.
T Consensus 325 ~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~ 354 (456)
T PRK10590 325 VPEDYVHRIGRTGRAAATGEALSLVCVDEH 354 (456)
T ss_pred CHHHhhhhccccccCCCCeeEEEEecHHHH
Confidence 89999999999999985 999999887654
No 24
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.95 E-value=5e-27 Score=256.68 Aligned_cols=222 Identities=16% Similarity=0.169 Sum_probs=165.0
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCC--HHHHHhhhCC
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE--AEKFQGYFYG 84 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~--~~~~~~~f~~ 84 (574)
+.+|+|+|||+|++.+.... .++++++|||||+|. .++..+. ..+..++...++.|++++|||+. .+.+...+..
T Consensus 246 ~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~-ml~~gf~-~~i~~i~~~l~~~q~l~~SATl~~~v~~l~~~~~~ 323 (518)
T PLN00206 246 GVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDC-MLERGFR-DQVMQIFQALSQPQVLLFSATVSPEVEKFASSLAK 323 (518)
T ss_pred CCCEEEECHHHHHHHHHcCCccchheeEEEeecHHH-HhhcchH-HHHHHHHHhCCCCcEEEEEeeCCHHHHHHHHHhCC
Confidence 46899999999999987654 699999999999993 2222222 12233334446789999999995 5667776654
Q ss_pred CCe-EEeCCeeec---eeEEeecCCchhHHHHHHHHHHHHHhc--CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCC
Q 008209 85 APL-MKVPGRLHP---VEIFYTQEPERDYLEAAIRTVVQIHMC--EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVG 158 (574)
Q Consensus 85 ~~~-i~~~gr~~~---v~~~y~~~~~~~~~~~~~~~~~~i~~~--~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~ 158 (574)
.++ +.+.....+ +...+......+... .+..+... ...+++|||++++..++.+++.|.. ..
T Consensus 324 ~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~----~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~--------~~ 391 (518)
T PLN00206 324 DIILISIGNPNRPNKAVKQLAIWVETKQKKQ----KLFDILKSKQHFKPPAVVFVSSRLGADLLANAITV--------VT 391 (518)
T ss_pred CCEEEEeCCCCCCCcceeEEEEeccchhHHH----HHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhh--------cc
Confidence 443 333222111 333322222222222 22222221 2356899999999999999998865 24
Q ss_pred CeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeee
Q 008209 159 PVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP 238 (574)
Q Consensus 159 ~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~ 238 (574)
++.+..+||++++.+|..+++.|+.|. .+|+|||+++++|||+|+|++||++++ |
T Consensus 392 g~~~~~~Hg~~~~~eR~~il~~Fr~G~-------~~ILVaTdvl~rGiDip~v~~VI~~d~------------------P 446 (518)
T PLN00206 392 GLKALSIHGEKSMKERREVMKSFLVGE-------VPVIVATGVLGRGVDLLRVRQVIIFDM------------------P 446 (518)
T ss_pred CcceEEeeCCCCHHHHHHHHHHHHCCC-------CCEEEEecHhhccCCcccCCEEEEeCC------------------C
Confidence 678999999999999999999999998 999999999999999999999998887 8
Q ss_pred ccHhhHHHhcccCCCCC-CCeEEeecccccc
Q 008209 239 ISKASAHQRSGRAGRTQ-PGKCFRLYTEKSF 268 (574)
Q Consensus 239 is~~~~~QR~GRaGR~~-~G~~~rl~t~~~~ 268 (574)
.|..+|.||+|||||.| +|.++.+++.++.
T Consensus 447 ~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~ 477 (518)
T PLN00206 447 NTIKEYIHQIGRASRMGEKGTAIVFVNEEDR 477 (518)
T ss_pred CCHHHHHHhccccccCCCCeEEEEEEchhHH
Confidence 89999999999999998 5999999987654
No 25
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.95 E-value=1e-26 Score=257.50 Aligned_cols=221 Identities=17% Similarity=0.231 Sum_probs=168.2
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCC--HHHH-HhhhC
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE--AEKF-QGYFY 83 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~--~~~~-~~~f~ 83 (574)
+.+|+|+|||.|++++.... .|+++++|||||+|+ .+...+.-.+...+....++.|+++||||++ ...+ ..|+.
T Consensus 125 ~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~-ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~ 203 (629)
T PRK11634 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE-MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMK 203 (629)
T ss_pred CCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHH-HhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcC
Confidence 47899999999999998765 599999999999996 2333232222222222455789999999995 3334 45665
Q ss_pred CCCeEEeCCeee---ceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCe
Q 008209 84 GAPLMKVPGRLH---PVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPV 160 (574)
Q Consensus 84 ~~~~i~~~gr~~---~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~ 160 (574)
+...+.+..... .+...|......+..+ .+..+........+||||+++.+++.+++.|.+ .++
T Consensus 204 ~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~----~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~---------~g~ 270 (629)
T PRK11634 204 EPQEVRIQSSVTTRPDISQSYWTVWGMRKNE----ALVRFLEAEDFDAAIIFVRTKNATLEVAEALER---------NGY 270 (629)
T ss_pred CCeEEEccCccccCCceEEEEEEechhhHHH----HHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHh---------CCC
Confidence 555555544321 2344444333333323 233333335567899999999999999999976 467
Q ss_pred EEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeecc
Q 008209 161 KVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPIS 240 (574)
Q Consensus 161 ~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is 240 (574)
.+..+||.+++.+|..+++.|..|. .+|||||+++++|||+|+|++||++++ |.+
T Consensus 271 ~~~~lhgd~~q~~R~~il~~Fr~G~-------~~ILVATdv~arGIDip~V~~VI~~d~------------------P~~ 325 (629)
T PRK11634 271 NSAALNGDMNQALREQTLERLKDGR-------LDILIATDVAARGLDVERISLVVNYDI------------------PMD 325 (629)
T ss_pred CEEEeeCCCCHHHHHHHHHHHhCCC-------CCEEEEcchHhcCCCcccCCEEEEeCC------------------CCC
Confidence 8999999999999999999999998 999999999999999999999998877 889
Q ss_pred HhhHHHhcccCCCCCC-CeEEeeccccc
Q 008209 241 KASAHQRSGRAGRTQP-GKCFRLYTEKS 267 (574)
Q Consensus 241 ~~~~~QR~GRaGR~~~-G~~~rl~t~~~ 267 (574)
.++|.||+|||||.|. |.++.+++..+
T Consensus 326 ~e~yvqRiGRtGRaGr~G~ai~~v~~~e 353 (629)
T PRK11634 326 SESYVHRIGRTGRAGRAGRALLFVENRE 353 (629)
T ss_pred HHHHHHHhccccCCCCcceEEEEechHH
Confidence 9999999999999985 99999987654
No 26
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.95 E-value=6.9e-27 Score=251.40 Aligned_cols=223 Identities=18% Similarity=0.247 Sum_probs=166.2
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCH---HHHHhhhC
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA---EKFQGYFY 83 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~---~~~~~~f~ 83 (574)
..+|+|+|||+|++.+.... .+.++++|||||+| |.++..+.-.+.......+...|+++||||++. ..|..++.
T Consensus 123 ~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah-~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~ 201 (434)
T PRK11192 123 NQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD-RMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLL 201 (434)
T ss_pred CCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH-HHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHc
Confidence 46899999999999998766 48999999999999 344333322222222224456799999999963 45555554
Q ss_pred CCCe-EEeCCee---eceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCC
Q 008209 84 GAPL-MKVPGRL---HPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGP 159 (574)
Q Consensus 84 ~~~~-i~~~gr~---~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~ 159 (574)
..|+ +.+.... ..+...|......+. ....+..+......+++|||++++++++.+++.|.+ .+
T Consensus 202 ~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~---k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~---------~~ 269 (434)
T PRK11192 202 NDPVEVEAEPSRRERKKIHQWYYRADDLEH---KTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRK---------AG 269 (434)
T ss_pred cCCEEEEecCCcccccCceEEEEEeCCHHH---HHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHh---------CC
Confidence 4333 3322211 113333332222121 223344444444678999999999999999999976 46
Q ss_pred eEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeec
Q 008209 160 VKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPI 239 (574)
Q Consensus 160 ~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~i 239 (574)
+.+..+||++++.+|..+++.|+.|. .+|||||+++++|||+|+|++||++++ |.
T Consensus 270 ~~~~~l~g~~~~~~R~~~l~~f~~G~-------~~vLVaTd~~~~GiDip~v~~VI~~d~------------------p~ 324 (434)
T PRK11192 270 INCCYLEGEMVQAKRNEAIKRLTDGR-------VNVLVATDVAARGIDIDDVSHVINFDM------------------PR 324 (434)
T ss_pred CCEEEecCCCCHHHHHHHHHHHhCCC-------CcEEEEccccccCccCCCCCEEEEECC------------------CC
Confidence 78999999999999999999999998 999999999999999999999999887 88
Q ss_pred cHhhHHHhcccCCCCC-CCeEEeecccccc
Q 008209 240 SKASAHQRSGRAGRTQ-PGKCFRLYTEKSF 268 (574)
Q Consensus 240 s~~~~~QR~GRaGR~~-~G~~~rl~t~~~~ 268 (574)
|...|.||+|||||.| .|.++.+++..++
T Consensus 325 s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~ 354 (434)
T PRK11192 325 SADTYLHRIGRTGRAGRKGTAISLVEAHDH 354 (434)
T ss_pred CHHHHhhcccccccCCCCceEEEEecHHHH
Confidence 9999999999999987 4999999887665
No 27
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=9.5e-27 Score=249.31 Aligned_cols=221 Identities=19% Similarity=0.213 Sum_probs=163.0
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCC---CccEEEEccCCCH--HHH-Hh
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRP---DLKLVVMSATLEA--EKF-QG 80 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~---~~klvlmSATl~~--~~~-~~ 80 (574)
+.+|+|+|||.|++.+.... .++++++|||||+|. .++..+. ..++.++...+ ..+.+++|||++. ..+ ..
T Consensus 133 ~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~-l~~~~f~-~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~ 210 (423)
T PRK04837 133 GVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADR-MFDLGFI-KDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFE 210 (423)
T ss_pred CCCEEEECHHHHHHHHHcCCcccccccEEEEecHHH-HhhcccH-HHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHH
Confidence 36899999999999987644 589999999999994 3333322 22233333222 4457899999963 333 34
Q ss_pred hhCCCCeEEeCCee---eceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCC
Q 008209 81 YFYGAPLMKVPGRL---HPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQV 157 (574)
Q Consensus 81 ~f~~~~~i~~~gr~---~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~ 157 (574)
++.++..+.+.... ..+...+......+. ...+..+......+++||||+++..++.+++.|.+
T Consensus 211 ~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k----~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~--------- 277 (423)
T PRK04837 211 HMNNPEYVEVEPEQKTGHRIKEELFYPSNEEK----MRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAA--------- 277 (423)
T ss_pred HCCCCEEEEEcCCCcCCCceeEEEEeCCHHHH----HHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHh---------
Confidence 55444444443221 112222222222222 22333444434578999999999999999999975
Q ss_pred CCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeee
Q 008209 158 GPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVS 237 (574)
Q Consensus 158 ~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~ 237 (574)
.++.+..+||++++.+|..+++.|..|. .+|+|||+++++|||||+|++||++++
T Consensus 278 ~g~~v~~lhg~~~~~~R~~~l~~F~~g~-------~~vLVaTdv~~rGiDip~v~~VI~~d~------------------ 332 (423)
T PRK04837 278 DGHRVGLLTGDVAQKKRLRILEEFTRGD-------LDILVATDVAARGLHIPAVTHVFNYDL------------------ 332 (423)
T ss_pred CCCcEEEecCCCChhHHHHHHHHHHcCC-------CcEEEEechhhcCCCccccCEEEEeCC------------------
Confidence 4678999999999999999999999998 999999999999999999999999887
Q ss_pred eccHhhHHHhcccCCCCCC-CeEEeecccccc
Q 008209 238 PISKASAHQRSGRAGRTQP-GKCFRLYTEKSF 268 (574)
Q Consensus 238 ~is~~~~~QR~GRaGR~~~-G~~~rl~t~~~~ 268 (574)
|.+.++|.||+|||||.|. |.++.++++++.
T Consensus 333 P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~ 364 (423)
T PRK04837 333 PDDCEDYVHRIGRTGRAGASGHSISLACEEYA 364 (423)
T ss_pred CCchhheEeccccccCCCCCeeEEEEeCHHHH
Confidence 8899999999999999994 999999987643
No 28
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.94 E-value=3.4e-26 Score=258.20 Aligned_cols=230 Identities=19% Similarity=0.217 Sum_probs=166.4
Q ss_pred CCCeEEEchHHHHHHHhcC-----CCCCCccEEEEecCCC----CCcchHHHHHHHHHHHh-hCCCccEEEEccCC-CHH
Q 008209 8 LLGGRYLTDGMLLREAMTD-----PLLERYKVIVLDEAHE----RTLATDVLFGLLKEVLK-NRPDLKLVVMSATL-EAE 76 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~-----~~L~~~~~vIiDE~He----R~~~~d~ll~~lk~~~~-~~~~~klvlmSATl-~~~ 76 (574)
..+|+++||++|...++.+ ..|+++++|||||+|. ++.+...++..++++.. ...+.|+|++|||+ +..
T Consensus 129 ~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~ 208 (742)
T TIGR03817 129 HARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPA 208 (742)
T ss_pred CCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHH
Confidence 4689999999998655532 2389999999999995 22234445555555544 23578999999999 566
Q ss_pred HHHhhhCCCCeEEeCCe--eec-eeEEeecCC-----c-------hhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHH
Q 008209 77 KFQGYFYGAPLMKVPGR--LHP-VEIFYTQEP-----E-------RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIED 141 (574)
Q Consensus 77 ~~~~~f~~~~~i~~~gr--~~~-v~~~y~~~~-----~-------~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~ 141 (574)
.+.+.+.+.++..+... ... ..+.+...+ . ..........+..+.. .+.++|||++|++.++.
T Consensus 209 ~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~--~~~~~IVF~~sr~~ae~ 286 (742)
T TIGR03817 209 AAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVA--EGARTLTFVRSRRGAEL 286 (742)
T ss_pred HHHHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHH--CCCCEEEEcCCHHHHHH
Confidence 66655555555544332 211 222221111 0 0111122333333332 46899999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCccc
Q 008209 142 ACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAK 221 (574)
Q Consensus 142 ~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k 221 (574)
+++.|.+.+..... .....+..+||++++++|.++++.|++|. .++|||||++|+|||||++++||++|+
T Consensus 287 l~~~l~~~l~~~~~-~l~~~v~~~hgg~~~~eR~~ie~~f~~G~-------i~vLVaTd~lerGIDI~~vd~VI~~~~-- 356 (742)
T TIGR03817 287 VAAIARRLLGEVDP-DLAERVAAYRAGYLPEDRRELERALRDGE-------LLGVATTNALELGVDISGLDAVVIAGF-- 356 (742)
T ss_pred HHHHHHHHHHhhcc-ccccchhheecCCCHHHHHHHHHHHHcCC-------ceEEEECchHhccCCcccccEEEEeCC--
Confidence 99999875533211 12456889999999999999999999998 999999999999999999999999998
Q ss_pred ceeecCCCCcceeeeeeccHhhHHHhcccCCCCCC-CeEEeeccc
Q 008209 222 QKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQP-GKCFRLYTE 265 (574)
Q Consensus 222 ~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~-G~~~rl~t~ 265 (574)
|-|.++|.||+|||||.|. |.++.+.++
T Consensus 357 ----------------P~s~~~y~qRiGRaGR~G~~g~ai~v~~~ 385 (742)
T TIGR03817 357 ----------------PGTRASLWQQAGRAGRRGQGALVVLVARD 385 (742)
T ss_pred ----------------CCCHHHHHHhccccCCCCCCcEEEEEeCC
Confidence 8899999999999999985 999988764
No 29
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=2e-26 Score=253.66 Aligned_cols=221 Identities=19% Similarity=0.237 Sum_probs=163.7
Q ss_pred CCCeEEEchHHHHHHHhcCC--CCCCccEEEEecCCCCCcchHHHHHHHHHHHh---hCCCccEEEEccCCCH---HHHH
Q 008209 8 LLGGRYLTDGMLLREAMTDP--LLERYKVIVLDEAHERTLATDVLFGLLKEVLK---NRPDLKLVVMSATLEA---EKFQ 79 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~--~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~---~~~~~klvlmSATl~~---~~~~ 79 (574)
+.+|+|+|||.|++.+.... .+..+++|||||+|. .++..+. ..++.++. .+.+.|+++||||++. +...
T Consensus 134 ~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~-lld~gf~-~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~ 211 (572)
T PRK04537 134 GVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADR-MFDLGFI-KDIRFLLRRMPERGTRQTLLFSATLSHRVLELAY 211 (572)
T ss_pred CCCEEEECHHHHHHHHHhccccchhheeeeEecCHHH-HhhcchH-HHHHHHHHhcccccCceEEEEeCCccHHHHHHHH
Confidence 46899999999999987654 488999999999994 2222222 22222332 2236799999999964 2333
Q ss_pred hhhCCCCeEEeCCeee---ceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCC
Q 008209 80 GYFYGAPLMKVPGRLH---PVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQ 156 (574)
Q Consensus 80 ~~f~~~~~i~~~gr~~---~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~ 156 (574)
.++.....+.+..... .+...+......+. +..+..+.....+.++|||++++..++.+++.|.+
T Consensus 212 ~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k----~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~-------- 279 (572)
T PRK04537 212 EHMNEPEKLVVETETITAARVRQRIYFPADEEK----QTLLLGLLSRSEGARTMVFVNTKAFVERVARTLER-------- 279 (572)
T ss_pred HHhcCCcEEEeccccccccceeEEEEecCHHHH----HHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHH--------
Confidence 4554433333332221 12233322222222 23344444445678999999999999999999976
Q ss_pred CCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeee
Q 008209 157 VGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLV 236 (574)
Q Consensus 157 ~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~ 236 (574)
.++.+..+||++++.+|..+++.|.+|. .+|||||+++++|||+|+|++||++++
T Consensus 280 -~g~~v~~lhg~l~~~eR~~il~~Fr~G~-------~~VLVaTdv~arGIDip~V~~VInyd~----------------- 334 (572)
T PRK04537 280 -HGYRVGVLSGDVPQKKRESLLNRFQKGQ-------LEILVATDVAARGLHIDGVKYVYNYDL----------------- 334 (572)
T ss_pred -cCCCEEEEeCCCCHHHHHHHHHHHHcCC-------CeEEEEehhhhcCCCccCCCEEEEcCC-----------------
Confidence 4578999999999999999999999988 999999999999999999999999887
Q ss_pred eeccHhhHHHhcccCCCCCC-CeEEeecccccc
Q 008209 237 SPISKASAHQRSGRAGRTQP-GKCFRLYTEKSF 268 (574)
Q Consensus 237 ~~is~~~~~QR~GRaGR~~~-G~~~rl~t~~~~ 268 (574)
|.+..+|.||+|||||.+. |.|+.++++.+.
T Consensus 335 -P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~ 366 (572)
T PRK04537 335 -PFDAEDYVHRIGRTARLGEEGDAISFACERYA 366 (572)
T ss_pred -CCCHHHHhhhhcccccCCCCceEEEEecHHHH
Confidence 8899999999999999984 999999887543
No 30
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=2.2e-26 Score=249.95 Aligned_cols=221 Identities=20% Similarity=0.291 Sum_probs=163.3
Q ss_pred CCCeEEEchHHHHHHHhcC-CCCCCccEEEEecCCCCCcchHHHHHHHHHHHhh---CCCccEEEEccCCC--HHHHHh-
Q 008209 8 LLGGRYLTDGMLLREAMTD-PLLERYKVIVLDEAHERTLATDVLFGLLKEVLKN---RPDLKLVVMSATLE--AEKFQG- 80 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~-~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~---~~~~klvlmSATl~--~~~~~~- 80 (574)
..+|+|+|||+|+..+... ..|+++++|||||+|. -....+ ...+++++.. ..+.|+|++|||+. ...+.+
T Consensus 213 ~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~-l~~~~~-~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~ 290 (475)
T PRK01297 213 FCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADR-MLDMGF-IPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQ 290 (475)
T ss_pred CCCEEEECHHHHHHHHHcCCcccccCceEEechHHH-HHhccc-HHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHH
Confidence 4689999999999887654 4689999999999994 222222 2334444442 23579999999984 344444
Q ss_pred hhCCCCeEEeCCeee---ceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCC
Q 008209 81 YFYGAPLMKVPGRLH---PVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQV 157 (574)
Q Consensus 81 ~f~~~~~i~~~gr~~---~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~ 157 (574)
|..+..++.+..... .+..++......+.. ..+..+......+++|||++++++++.+++.|.+
T Consensus 291 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~----~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~--------- 357 (475)
T PRK01297 291 WTTDPAIVEIEPENVASDTVEQHVYAVAGSDKY----KLLYNLVTQNPWERVMVFANRKDEVRRIEERLVK--------- 357 (475)
T ss_pred hccCCEEEEeccCcCCCCcccEEEEEecchhHH----HHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHH---------
Confidence 443433443333221 122222222222222 2233333335567999999999999999999865
Q ss_pred CCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeee
Q 008209 158 GPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVS 237 (574)
Q Consensus 158 ~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~ 237 (574)
.++.+..+||+++.++|.++++.|++|. .+|||||+++|+|||||++++||++|+
T Consensus 358 ~~~~~~~~~g~~~~~~R~~~~~~Fr~G~-------~~vLvaT~~l~~GIDi~~v~~VI~~~~------------------ 412 (475)
T PRK01297 358 DGINAAQLSGDVPQHKRIKTLEGFREGK-------IRVLVATDVAGRGIHIDGISHVINFTL------------------ 412 (475)
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHhCCC-------CcEEEEccccccCCcccCCCEEEEeCC------------------
Confidence 4567899999999999999999999998 999999999999999999999999988
Q ss_pred eccHhhHHHhcccCCCCCC-CeEEeecccccc
Q 008209 238 PISKASAHQRSGRAGRTQP-GKCFRLYTEKSF 268 (574)
Q Consensus 238 ~is~~~~~QR~GRaGR~~~-G~~~rl~t~~~~ 268 (574)
|.|.++|.||+|||||.|. |.++.++++++.
T Consensus 413 P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~ 444 (475)
T PRK01297 413 PEDPDDYVHRIGRTGRAGASGVSISFAGEDDA 444 (475)
T ss_pred CCCHHHHHHhhCccCCCCCCceEEEEecHHHH
Confidence 8899999999999999984 999999987643
No 31
>PTZ00424 helicase 45; Provisional
Probab=99.94 E-value=1.4e-26 Score=246.62 Aligned_cols=222 Identities=17% Similarity=0.261 Sum_probs=165.3
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHH-hhCCCccEEEEccCCCH--HHHH-hhh
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVL-KNRPDLKLVVMSATLEA--EKFQ-GYF 82 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~-~~~~~~klvlmSATl~~--~~~~-~~f 82 (574)
+.+|+++|+|.|.+.+.... .++++++|||||+|. -....+. ..+..++ ...++.|+|++|||+.. ..+. .|+
T Consensus 146 ~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~-~~~~~~~-~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 223 (401)
T PTZ00424 146 GVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE-MLSRGFK-GQIYDVFKKLPPDVQVALFSATMPNEILELTTKFM 223 (401)
T ss_pred CCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH-HHhcchH-HHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHc
Confidence 35899999999999988765 589999999999994 1111111 1122222 24578999999999953 3333 344
Q ss_pred CCCCeEEeCCee---eceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCC
Q 008209 83 YGAPLMKVPGRL---HPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGP 159 (574)
Q Consensus 83 ~~~~~i~~~gr~---~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~ 159 (574)
.+...+.+.... ..+..+|......++.. ..+..+......+++||||+++++++.+++.|.+ .+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~---------~~ 291 (401)
T PTZ00424 224 RDPKRILVKKDELTLEGIRQFYVAVEKEEWKF---DTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHE---------RD 291 (401)
T ss_pred CCCEEEEeCCCCcccCCceEEEEecChHHHHH---HHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHH---------CC
Confidence 333333333321 12344454433333322 2333444444567899999999999999999875 45
Q ss_pred eEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeec
Q 008209 160 VKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPI 239 (574)
Q Consensus 160 ~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~i 239 (574)
+.+..+||+++..+|..+++.|++|. .+|+|||+++++|||+|++++||++|. |.
T Consensus 292 ~~~~~~h~~~~~~~R~~i~~~f~~g~-------~~vLvaT~~l~~GiDip~v~~VI~~~~------------------p~ 346 (401)
T PTZ00424 292 FTVSCMHGDMDQKDRDLIMREFRSGS-------TRVLITTDLLARGIDVQQVSLVINYDL------------------PA 346 (401)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHcCC-------CCEEEEcccccCCcCcccCCEEEEECC------------------CC
Confidence 77999999999999999999999998 999999999999999999999998876 88
Q ss_pred cHhhHHHhcccCCCCC-CCeEEeecccccc
Q 008209 240 SKASAHQRSGRAGRTQ-PGKCFRLYTEKSF 268 (574)
Q Consensus 240 s~~~~~QR~GRaGR~~-~G~~~rl~t~~~~ 268 (574)
|..+|.||+|||||.+ +|.|+.++++++.
T Consensus 347 s~~~y~qr~GRagR~g~~G~~i~l~~~~~~ 376 (401)
T PTZ00424 347 SPENYIHRIGRSGRFGRKGVAINFVTPDDI 376 (401)
T ss_pred CHHHEeecccccccCCCCceEEEEEcHHHH
Confidence 9999999999999988 5999999998765
No 32
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.94 E-value=1.9e-26 Score=235.12 Aligned_cols=226 Identities=19% Similarity=0.271 Sum_probs=179.9
Q ss_pred CccccCCCeEEEchHHHHHHHhc-CCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhC-----C--------------
Q 008209 3 LCFCVLLGGRYLTDGMLLREAMT-DPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR-----P-------------- 62 (574)
Q Consensus 3 ~~~~~~~~I~~~T~g~Ll~~l~~-~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~-----~-------------- 62 (574)
+..+.+-+|+++|||.|+..|.+ .-.|+.+.+||+||++ |.+++.|--.+.+.+-... |
T Consensus 367 fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldead-rmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~ 445 (673)
T KOG0333|consen 367 FQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEAD-RMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKN 445 (673)
T ss_pred hhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchh-hhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhh
Confidence 44566789999999999999965 4468999999999999 6777776655555443311 0
Q ss_pred ----C--ccEEEEccCCC--HHHHH-hhhCCCCeEEe--CCeeec-eeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEE
Q 008209 63 ----D--LKLVVMSATLE--AEKFQ-GYFYGAPLMKV--PGRLHP-VEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDIL 130 (574)
Q Consensus 63 ----~--~klvlmSATl~--~~~~~-~~f~~~~~i~~--~gr~~~-v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iL 130 (574)
. .+.+++|||+. ++.++ .||..+-++.+ .|++.| |+....-..+.+. ...+..+..+....+|+
T Consensus 446 ~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k----~kkL~eil~~~~~ppiI 521 (673)
T KOG0333|consen 446 FSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEK----RKKLIEILESNFDPPII 521 (673)
T ss_pred cccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHH----HHHHHHHHHhCCCCCEE
Confidence 1 57899999995 45554 68876655554 456666 4433322222222 33455555555678999
Q ss_pred EEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCC
Q 008209 131 VFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDG 210 (574)
Q Consensus 131 VFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~ 210 (574)
||+|+++.++.+++.|++ .++.+..|||+-++++|..+++.|+.|. ..|+||||+|.+||||||
T Consensus 522 IFvN~kk~~d~lAk~LeK---------~g~~~~tlHg~k~qeQRe~aL~~fr~~t-------~dIlVaTDvAgRGIDIpn 585 (673)
T KOG0333|consen 522 IFVNTKKGADALAKILEK---------AGYKVTTLHGGKSQEQRENALADFREGT-------GDILVATDVAGRGIDIPN 585 (673)
T ss_pred EEEechhhHHHHHHHHhh---------ccceEEEeeCCccHHHHHHHHHHHHhcC-------CCEEEEecccccCCCCCc
Confidence 999999999999999987 5699999999999999999999999998 899999999999999999
Q ss_pred eEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCC-CeEEeeccccc
Q 008209 211 IVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQP-GKCFRLYTEKS 267 (574)
Q Consensus 211 v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~-G~~~rl~t~~~ 267 (574)
|.+|||+++ ..|..+|.||.||+||.|. |.+..++|+++
T Consensus 586 VSlVinydm------------------aksieDYtHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 586 VSLVINYDM------------------AKSIEDYTHRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred cceeeecch------------------hhhHHHHHHHhccccccccCceeEEEeccch
Confidence 999999988 6788999999999999996 99999999877
No 33
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.94 E-value=5e-25 Score=246.42 Aligned_cols=329 Identities=22% Similarity=0.283 Sum_probs=223.9
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCC----C-CCcchHHHHHHHHHHHhhCCCccEEEEccCC-CHHHHHh
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAH----E-RTLATDVLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQG 80 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~H----e-R~~~~d~ll~~lk~~~~~~~~~klvlmSATl-~~~~~~~ 80 (574)
.++|+|+|+.-+=..+.+.+ ++.++++|||||+| + |+...+.+++.++. ..+.+|||.+|||+ |...+++
T Consensus 122 ~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~---~~~~~rivgLSATlpN~~evA~ 198 (766)
T COG1204 122 RYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRR---LNELIRIVGLSATLPNAEEVAD 198 (766)
T ss_pred cCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHh---hCcceEEEEEeeecCCHHHHHH
Confidence 47899999999876666655 68999999999999 5 99999999988776 44568999999999 8999999
Q ss_pred hhCCCCeEEeCCeeec--------eeEEeecCCch----hHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHH
Q 008209 81 YFYGAPLMKVPGRLHP--------VEIFYTQEPER----DYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITK 148 (574)
Q Consensus 81 ~f~~~~~i~~~gr~~~--------v~~~y~~~~~~----~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~ 148 (574)
|++..++ ....++.| ..+++...... .........+...+ .++|++|||++++++....++.|.+
T Consensus 199 wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~--~~~~qvLvFv~sR~~a~~~A~~l~~ 275 (766)
T COG1204 199 WLNAKLV-ESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESL--AEGGQVLVFVHSRKEAEKTAKKLRI 275 (766)
T ss_pred HhCCccc-ccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHH--hcCCeEEEEEecCchHHHHHHHHHH
Confidence 9974433 32333222 12222221111 12223334444433 4799999999999999999999985
Q ss_pred HHhhc---------C---CC----------------CCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc
Q 008209 149 EITNM---------G---DQ----------------VGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 200 (574)
Q Consensus 149 ~~~~~---------~---~~----------------~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ 200 (574)
.+... . .. .-...+..||++|+.++|..+.+.|+.|+ .|||+||+
T Consensus 276 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~-------ikVlv~Tp 348 (766)
T COG1204 276 KMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGK-------IKVLVSTP 348 (766)
T ss_pred HHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCC-------ceEEEech
Confidence 32211 0 00 00124677999999999999999999999 99999999
Q ss_pred cccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC---CCeEEeec-ccccc--ccccCC
Q 008209 201 IAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ---PGKCFRLY-TEKSF--NNDLQP 274 (574)
Q Consensus 201 iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~---~G~~~rl~-t~~~~--~~~l~~ 274 (574)
+++.|||.|.-++|| ....+||+..| .+++++-++.||.|||||+| -|..+-+- +.+.. ......
T Consensus 349 TLA~GVNLPA~~VII----k~~~~y~~~~g-----~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~ 419 (766)
T COG1204 349 TLAAGVNLPARTVII----KDTRRYDPKGG-----IVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYI 419 (766)
T ss_pred HHhhhcCCcceEEEE----eeeEEEcCCCC-----eEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhh
Confidence 999999999888888 66788998444 46999999999999999999 24444443 22221 112233
Q ss_pred CCcchhccCCch------hhHHHHhhcCCC----Ccccc-------CCC--CCCcHHHHHHHHHHHHHcC-CccCCC---
Q 008209 275 QTYPEILRSNLA------NTVLTLKKLGID----DLVHF-------DFM--DPPAPETLMRALEVLNYLG-ALDDDG--- 331 (574)
Q Consensus 275 ~~~pei~~~~l~------~~~L~l~~~~~~----~~~~~-------~~l--~~P~~~~l~~al~~L~~lg-ald~~~--- 331 (574)
...||...+.|. ..++.+.+.|.. ....| +.. .--....+..++..|.+.+ +++...
T Consensus 420 ~~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~~~~~ 499 (766)
T COG1204 420 QSEPEPIESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGMLREEILASLRYLEENGLILDADWEAL 499 (766)
T ss_pred ccCcchHHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHhccceeecccccc
Confidence 344554222111 111111111100 00000 110 0123566788999999986 665543
Q ss_pred CcChhhhhhccCCCCHHHHHHHHhccC
Q 008209 332 NLTEMGEKMSEFPLDPQMSKMLVESPK 358 (574)
Q Consensus 332 ~lT~lG~~~~~lpl~p~~~~~ll~~~~ 358 (574)
..|++|+.+++++++|..++.+.....
T Consensus 500 ~ate~g~~~s~~yi~~~sa~~~~~~l~ 526 (766)
T COG1204 500 HATELGKLVSRLYIDPESAKIFRDLLA 526 (766)
T ss_pred chhHHHHHhhhccCCHHHHHHHHHHHH
Confidence 589999999999999999999877643
No 34
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=4.3e-25 Score=239.12 Aligned_cols=223 Identities=17% Similarity=0.218 Sum_probs=158.6
Q ss_pred CCCeEEEchHHHHHHH--hcCC-CCCCccEEEEecCCCC---CcchHHHHHHHHHHHhhCCCccEEEEccCCCHH---HH
Q 008209 8 LLGGRYLTDGMLLREA--MTDP-LLERYKVIVLDEAHER---TLATDVLFGLLKEVLKNRPDLKLVVMSATLEAE---KF 78 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l--~~~~-~L~~~~~vIiDE~HeR---~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~---~~ 78 (574)
..+|+|+||+.+.... ...- .+.++++|||||+|.- +.+.--.+..+..+....++.+++++|||++.. .+
T Consensus 101 ~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di 180 (470)
T TIGR00614 101 KIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDI 180 (470)
T ss_pred CCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHH
Confidence 3689999999875422 1111 4678999999999942 222112222333344456889999999999754 34
Q ss_pred HhhhC-CCCeEEeCCeeeceeEEeecCCc-hhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCC
Q 008209 79 QGYFY-GAPLMKVPGRLHPVEIFYTQEPE-RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQ 156 (574)
Q Consensus 79 ~~~f~-~~~~i~~~gr~~~v~~~y~~~~~-~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~ 156 (574)
.+.++ ..+.+...+-..| .++|..... .+........+.. ..++...|||++++++++.+++.|.+
T Consensus 181 ~~~l~l~~~~~~~~s~~r~-nl~~~v~~~~~~~~~~l~~~l~~---~~~~~~~IIF~~s~~~~e~la~~L~~-------- 248 (470)
T TIGR00614 181 LRQLNLKNPQIFCTSFDRP-NLYYEVRRKTPKILEDLLRFIRK---EFKGKSGIIYCPSRKKSEQVTASLQN-------- 248 (470)
T ss_pred HHHcCCCCCcEEeCCCCCC-CcEEEEEeCCccHHHHHHHHHHH---hcCCCceEEEECcHHHHHHHHHHHHh--------
Confidence 44443 2333332222222 122221111 1233322222221 23455679999999999999999976
Q ss_pred CCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeee
Q 008209 157 VGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLV 236 (574)
Q Consensus 157 ~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~ 236 (574)
.++.+..+||+|++++|..+++.|..|. .+|||||+++++|||+|+|++||+++.
T Consensus 249 -~g~~~~~~H~~l~~~eR~~i~~~F~~g~-------~~vLVaT~~~~~GID~p~V~~VI~~~~----------------- 303 (470)
T TIGR00614 249 -LGIAAGAYHAGLEISARDDVHHKFQRDE-------IQVVVATVAFGMGINKPDVRFVIHYSL----------------- 303 (470)
T ss_pred -cCCCeeEeeCCCCHHHHHHHHHHHHcCC-------CcEEEEechhhccCCcccceEEEEeCC-----------------
Confidence 4678999999999999999999999988 999999999999999999999999887
Q ss_pred eeccHhhHHHhcccCCCCC-CCeEEeecccccc
Q 008209 237 SPISKASAHQRSGRAGRTQ-PGKCFRLYTEKSF 268 (574)
Q Consensus 237 ~~is~~~~~QR~GRaGR~~-~G~~~rl~t~~~~ 268 (574)
|.|.++|.||+|||||.| +|.|+.+|+..+.
T Consensus 304 -P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~ 335 (470)
T TIGR00614 304 -PKSMESYYQESGRAGRDGLPSECHLFYAPADI 335 (470)
T ss_pred -CCCHHHHHhhhcCcCCCCCCceEEEEechhHH
Confidence 889999999999999999 6999999998765
No 35
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.5e-25 Score=212.76 Aligned_cols=222 Identities=18% Similarity=0.265 Sum_probs=174.2
Q ss_pred CCCeEEEchHHHHHHHhcCCC-CCCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCCHHH--HHhhhC
Q 008209 8 LLGGRYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLEAEK--FQGYFY 83 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~~-L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~~~~--~~~~f~ 83 (574)
+-+++.+|||++++++....+ -..+..+|+||++| .++-.+- ..+-++.+ ..|+.|+++.|||++-+. ..++|.
T Consensus 145 G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDe-mL~kgfk-~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfm 222 (400)
T KOG0328|consen 145 GQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADE-MLNKGFK-EQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFM 222 (400)
T ss_pred cceEeeCCCchHHHHHHhccccccceeEEEeccHHH-HHHhhHH-HHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhc
Confidence 467899999999999976654 68899999999997 2222121 11222333 567999999999997543 345555
Q ss_pred CCCe-EEeC--Ceee-ceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCC
Q 008209 84 GAPL-MKVP--GRLH-PVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGP 159 (574)
Q Consensus 84 ~~~~-i~~~--gr~~-~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~ 159 (574)
..|+ +-+. +.+- -++.+|.....+++. ..++..+.....-.+.++||+|++.++.+.+.+++ ..
T Consensus 223 tdpvrilvkrdeltlEgIKqf~v~ve~EewK---fdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~---------~n 290 (400)
T KOG0328|consen 223 TDPVRILVKRDELTLEGIKQFFVAVEKEEWK---FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRE---------AN 290 (400)
T ss_pred CCceeEEEecCCCchhhhhhheeeechhhhh---HhHHHHHhhhhehheEEEEecccchhhHHHHHHHh---------hC
Confidence 5554 2222 2222 266777776655553 34555555555677899999999999999999886 57
Q ss_pred eEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeec
Q 008209 160 VKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPI 239 (574)
Q Consensus 160 ~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~i 239 (574)
+.|..+||.|+++||.+++..|+.|+ -+|+++|++-++|+|+|.|..|||+++ |.
T Consensus 291 ftVssmHGDm~qkERd~im~dFRsg~-------SrvLitTDVwaRGiDv~qVslviNYDL------------------P~ 345 (400)
T KOG0328|consen 291 FTVSSMHGDMEQKERDKIMNDFRSGK-------SRVLITTDVWARGIDVQQVSLVINYDL------------------PN 345 (400)
T ss_pred ceeeeccCCcchhHHHHHHHHhhcCC-------ceEEEEechhhccCCcceeEEEEecCC------------------Cc
Confidence 88999999999999999999999999 899999999999999999999999998 89
Q ss_pred cHhhHHHhcccCCCCCC-CeEEeecccccc
Q 008209 240 SKASAHQRSGRAGRTQP-GKCFRLYTEKSF 268 (574)
Q Consensus 240 s~~~~~QR~GRaGR~~~-G~~~rl~t~~~~ 268 (574)
.+..|+||.||+||-|. |+++.+...++.
T Consensus 346 nre~YIHRIGRSGRFGRkGvainFVk~~d~ 375 (400)
T KOG0328|consen 346 NRELYIHRIGRSGRFGRKGVAINFVKSDDL 375 (400)
T ss_pred cHHHHhhhhccccccCCcceEEEEecHHHH
Confidence 99999999999999995 999999887766
No 36
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.93 E-value=4e-25 Score=248.81 Aligned_cols=223 Identities=16% Similarity=0.171 Sum_probs=158.6
Q ss_pred CCCeEEEchHHHHH------HHhcCCCCCCccEEEEecCCCCCcc-hHHH--HHHHHHHHhhCCCccEEEEccCCCH---
Q 008209 8 LLGGRYLTDGMLLR------EAMTDPLLERYKVIVLDEAHERTLA-TDVL--FGLLKEVLKNRPDLKLVVMSATLEA--- 75 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~------~l~~~~~L~~~~~vIiDE~HeR~~~-~d~l--l~~lk~~~~~~~~~klvlmSATl~~--- 75 (574)
..+|+|+|||+|.. .+..-.....++.|||||+|.-+-. -||- +..+..+....++.+++++|||++.
T Consensus 552 ~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~ 631 (1195)
T PLN03137 552 KYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVK 631 (1195)
T ss_pred CCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHH
Confidence 46899999999752 2322223456899999999942111 1221 1122233345678999999999964
Q ss_pred HHHHhhhCCC-CeEEeCCeeeceeEEeecCCchhHHHHHHHHHHHHHh-cCCCCCEEEEcCCHHHHHHHHHHHHHHHhhc
Q 008209 76 EKFQGYFYGA-PLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHM-CEPSGDILVFLTGEEEIEDACRKITKEITNM 153 (574)
Q Consensus 76 ~~~~~~f~~~-~~i~~~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~-~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~ 153 (574)
+.+.+.++-. +++...+... -.++|.-.+.... ....+..... ...++..||||.++.+++.+++.|.+
T Consensus 632 eDI~~~L~l~~~~vfr~Sf~R-pNL~y~Vv~k~kk---~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~----- 702 (1195)
T PLN03137 632 EDVVQALGLVNCVVFRQSFNR-PNLWYSVVPKTKK---CLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQE----- 702 (1195)
T ss_pred HHHHHHcCCCCcEEeecccCc-cceEEEEeccchh---HHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHH-----
Confidence 3455555422 2222222211 2334433222221 1122222222 22356789999999999999999976
Q ss_pred CCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcce
Q 008209 154 GDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVES 233 (574)
Q Consensus 154 ~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~ 233 (574)
.++.+.++||+|++++|..+++.|..|. .+|||||+++++|||+|+|++||++++
T Consensus 703 ----~Gika~~YHAGLs~eeR~~vqe~F~~Ge-------i~VLVATdAFGMGIDkPDVR~VIHydl-------------- 757 (1195)
T PLN03137 703 ----FGHKAAFYHGSMDPAQRAFVQKQWSKDE-------INIICATVAFGMGINKPDVRFVIHHSL-------------- 757 (1195)
T ss_pred ----CCCCeeeeeCCCCHHHHHHHHHHHhcCC-------CcEEEEechhhcCCCccCCcEEEEcCC--------------
Confidence 5678999999999999999999999998 999999999999999999999999998
Q ss_pred eeeeeccHhhHHHhcccCCCCC-CCeEEeecccccc
Q 008209 234 LLVSPISKASAHQRSGRAGRTQ-PGKCFRLYTEKSF 268 (574)
Q Consensus 234 l~~~~is~~~~~QR~GRaGR~~-~G~~~rl~t~~~~ 268 (574)
|.|.++|.||+|||||.| +|.|+.+|+..++
T Consensus 758 ----PkSiEsYyQriGRAGRDG~~g~cILlys~~D~ 789 (1195)
T PLN03137 758 ----PKSIEGYHQECGRAGRDGQRSSCVLYYSYSDY 789 (1195)
T ss_pred ----CCCHHHHHhhhcccCCCCCCceEEEEecHHHH
Confidence 889999999999999998 6999999987665
No 37
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1.7e-25 Score=225.93 Aligned_cols=241 Identities=19% Similarity=0.218 Sum_probs=181.4
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCC--CccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCC--HHHHHhhh
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLE--RYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE--AEKFQGYF 82 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~--~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~--~~~~~~~f 82 (574)
+.+|+++|||+|++.+++.. .++ +++++|+|||+ |-+++.|--.+-..+...+...|.=++|||.. ++.+....
T Consensus 131 ~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEAD-rLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raG 209 (567)
T KOG0345|consen 131 GPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEAD-RLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAG 209 (567)
T ss_pred CCcEEEeCchhHHHHHhchhhhccccccceEEecchH-hHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhh
Confidence 57899999999999998743 344 99999999999 66777665444333333555778889999994 55665544
Q ss_pred -CCCCeEEeCCee---ec--eeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCC
Q 008209 83 -YGAPLMKVPGRL---HP--VEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQ 156 (574)
Q Consensus 83 -~~~~~i~~~gr~---~~--v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~ 156 (574)
.++--+++.... -| +..+|......... ..++++..+...+++|||+||...++.....+...+
T Consensus 210 LRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~----~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l------ 279 (567)
T KOG0345|consen 210 LRNPVRVSVKEKSKSATPSSLALEYLVCEADEKL----SQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLL------ 279 (567)
T ss_pred ccCceeeeecccccccCchhhcceeeEecHHHHH----HHHHHHHhccccccEEEEecCcchHHHHHHHHHHHh------
Confidence 444334444332 34 77788776544443 345556555678999999999999999999888742
Q ss_pred CCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeee
Q 008209 157 VGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLV 236 (574)
Q Consensus 157 ~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~ 236 (574)
....++++||.+.+.+|.++++.|.+.. ..+++||++|++|||||||++||. |||
T Consensus 280 -~~~~i~~iHGK~~q~~R~k~~~~F~~~~-------~~vl~~TDVaARGlDip~iD~VvQ--------~Dp--------- 334 (567)
T KOG0345|consen 280 -KKREIFSIHGKMSQKARAKVLEAFRKLS-------NGVLFCTDVAARGLDIPGIDLVVQ--------FDP--------- 334 (567)
T ss_pred -CCCcEEEecchhcchhHHHHHHHHHhcc-------CceEEeehhhhccCCCCCceEEEe--------cCC---------
Confidence 5678999999999999999999998866 789999999999999999999995 454
Q ss_pred eeccHhhHHHhcccCCCCCC-CeEEee--ccccccccccCCCCcchhccCCc
Q 008209 237 SPISKASAHQRSGRAGRTQP-GKCFRL--YTEKSFNNDLQPQTYPEILRSNL 285 (574)
Q Consensus 237 ~~is~~~~~QR~GRaGR~~~-G~~~rl--~t~~~~~~~l~~~~~pei~~~~l 285 (574)
|...+++.||+||+||.|. |..+.+ -.+..|.+-|.-...|++.+.+.
T Consensus 335 -P~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~ 385 (567)
T KOG0345|consen 335 -PKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDT 385 (567)
T ss_pred -CCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhcc
Confidence 7788999999999999885 766554 44555655566666666655543
No 38
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.93 E-value=7.6e-25 Score=222.67 Aligned_cols=223 Identities=17% Similarity=0.146 Sum_probs=168.3
Q ss_pred CCCeEEEchHHHHHHHhcCCC--CCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCC--HHHHHhhh-
Q 008209 8 LLGGRYLTDGMLLREAMTDPL--LERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE--AEKFQGYF- 82 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~~--L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~--~~~~~~~f- 82 (574)
+.+|+|+|||+|+++|++.+. .....++|+||++ |-++..|--.+.+.+-......|-.++|||++ ++.++.--
T Consensus 205 ~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD-rlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L 283 (543)
T KOG0342|consen 205 GCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD-RLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGAL 283 (543)
T ss_pred cccEEEeCCchHHhHhhcCCcchhhccceeEeecch-hhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhh
Confidence 579999999999999998763 5777899999999 55555554444443333556789999999995 55665432
Q ss_pred C-CCCeEEeCCeee-----ceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCC
Q 008209 83 Y-GAPLMKVPGRLH-----PVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQ 156 (574)
Q Consensus 83 ~-~~~~i~~~gr~~-----~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~ 156 (574)
. ++..+.+....- .++.-|.-.+....+...+..+.+ + ....+|+||++|...+..+++.|..
T Consensus 284 ~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk-~--~~~~KiiVF~sT~~~vk~~~~lL~~-------- 352 (543)
T KOG0342|consen 284 KRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKK-N--IKRYKIIVFFSTCMSVKFHAELLNY-------- 352 (543)
T ss_pred cCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHH-h--cCCceEEEEechhhHHHHHHHHHhh--------
Confidence 2 233344322211 155556555544433332222222 1 1238999999999999999999985
Q ss_pred CCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeee
Q 008209 157 VGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLV 236 (574)
Q Consensus 157 ~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~ 236 (574)
..+.|.-+||+.++..|..+|..|.+.. .-|+||||++++|+|+|+|+.||.+|.
T Consensus 353 -~dlpv~eiHgk~~Q~kRT~~~~~F~kae-------sgIL~cTDVaARGlD~P~V~~VvQ~~~----------------- 407 (543)
T KOG0342|consen 353 -IDLPVLEIHGKQKQNKRTSTFFEFCKAE-------SGILVCTDVAARGLDIPDVDWVVQYDP----------------- 407 (543)
T ss_pred -cCCchhhhhcCCcccccchHHHHHhhcc-------cceEEecchhhccCCCCCceEEEEeCC-----------------
Confidence 5788999999999999999999999887 899999999999999999999997665
Q ss_pred eeccHhhHHHhcccCCCCCC-CeEEeecccccc
Q 008209 237 SPISKASAHQRSGRAGRTQP-GKCFRLYTEKSF 268 (574)
Q Consensus 237 ~~is~~~~~QR~GRaGR~~~-G~~~rl~t~~~~ 268 (574)
|-.+.+|+||.||+||.|. |..+.+..+.+.
T Consensus 408 -P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El 439 (543)
T KOG0342|consen 408 -PSDPEQYIHRVGRTAREGKEGKALLLLAPWEL 439 (543)
T ss_pred -CCCHHHHHHHhccccccCCCceEEEEeChhHH
Confidence 8899999999999999885 999888776544
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.93 E-value=6.1e-25 Score=244.31 Aligned_cols=222 Identities=17% Similarity=0.248 Sum_probs=161.6
Q ss_pred CCCeEEEchHHHHHHH-hcCCCCCCccEEEEecCCCCC---cchHHHHHHHHHHHhhCCCccEEEEccCCCHHH---HHh
Q 008209 8 LLGGRYLTDGMLLREA-MTDPLLERYKVIVLDEAHERT---LATDVLFGLLKEVLKNRPDLKLVVMSATLEAEK---FQG 80 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l-~~~~~L~~~~~vIiDE~HeR~---~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~---~~~ 80 (574)
..+|+|+||+.|+... .......++++|||||+|.-+ .+..-.+..+..+....++.+++++|||++... +.+
T Consensus 115 ~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~ 194 (607)
T PRK11057 115 QIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194 (607)
T ss_pred CCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHH
Confidence 3679999999987532 222234589999999999532 221112233444444668899999999997543 333
Q ss_pred hhC-CCCeEEeCCeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCC
Q 008209 81 YFY-GAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGP 159 (574)
Q Consensus 81 ~f~-~~~~i~~~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~ 159 (574)
.++ ..|.+.+.+...| .+.|.-....... ..+........++++||||+++++++.+++.|.+ .+
T Consensus 195 ~l~l~~~~~~~~~~~r~-nl~~~v~~~~~~~----~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~---------~g 260 (607)
T PRK11057 195 LLGLNDPLIQISSFDRP-NIRYTLVEKFKPL----DQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQS---------RG 260 (607)
T ss_pred HhCCCCeEEEECCCCCC-cceeeeeeccchH----HHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHh---------CC
Confidence 332 3444444332222 1222211111122 2233333335678999999999999999999986 46
Q ss_pred eEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeec
Q 008209 160 VKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPI 239 (574)
Q Consensus 160 ~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~i 239 (574)
+.+.++||+|++++|.++++.|..|. .+|||||+++++|||+|+|++||++++ |.
T Consensus 261 ~~v~~~Ha~l~~~~R~~i~~~F~~g~-------~~VLVaT~a~~~GIDip~V~~VI~~d~------------------P~ 315 (607)
T PRK11057 261 ISAAAYHAGLDNDVRADVQEAFQRDD-------LQIVVATVAFGMGINKPNVRFVVHFDI------------------PR 315 (607)
T ss_pred CCEEEecCCCCHHHHHHHHHHHHCCC-------CCEEEEechhhccCCCCCcCEEEEeCC------------------CC
Confidence 78999999999999999999999988 999999999999999999999999887 88
Q ss_pred cHhhHHHhcccCCCCC-CCeEEeecccccc
Q 008209 240 SKASAHQRSGRAGRTQ-PGKCFRLYTEKSF 268 (574)
Q Consensus 240 s~~~~~QR~GRaGR~~-~G~~~rl~t~~~~ 268 (574)
|.++|.||+|||||.| +|.|+.+|+..+.
T Consensus 316 s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~ 345 (607)
T PRK11057 316 NIESYYQETGRAGRDGLPAEAMLFYDPADM 345 (607)
T ss_pred CHHHHHHHhhhccCCCCCceEEEEeCHHHH
Confidence 9999999999999999 5999999998765
No 40
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=5.2e-25 Score=218.36 Aligned_cols=223 Identities=22% Similarity=0.285 Sum_probs=181.7
Q ss_pred cCCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCC--HHHHH-hhh
Q 008209 7 VLLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE--AEKFQ-GYF 82 (574)
Q Consensus 7 ~~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~--~~~~~-~~f 82 (574)
.+-+|+++|||.|.+..+.+. .|..++++|+||++ |.+++.|-.++-|.++..|||.+.|+.|||.. +..++ +|+
T Consensus 342 rgveiiiatPgrlndL~~~n~i~l~siTYlVlDEAD-rMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~ 420 (629)
T KOG0336|consen 342 RGVEIIIATPGRLNDLQMDNVINLASITYLVLDEAD-RMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYL 420 (629)
T ss_pred cCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchh-hhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhh
Confidence 356899999999999888776 59999999999999 89999999999999999999999999999995 56666 455
Q ss_pred CCCCeEEeCCee-----eceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCC
Q 008209 83 YGAPLMKVPGRL-----HPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQV 157 (574)
Q Consensus 83 ~~~~~i~~~gr~-----~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~ 157 (574)
..|++...|.. ..|+..+.-..+.++++ .+...+.-+ .+..++||||..+--++.+..-+. .
T Consensus 421 -Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~-~~~~f~~~m--s~ndKvIiFv~~K~~AD~LSSd~~---------l 487 (629)
T KOG0336|consen 421 -KEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLE-IVQFFVANM--SSNDKVIIFVSRKVMADHLSSDFC---------L 487 (629)
T ss_pred -hCceEEEecccceeeeeeeeeeEEecccHHHHH-HHHHHHHhc--CCCceEEEEEechhhhhhccchhh---------h
Confidence 56777666653 33444444334444443 233333322 457899999999876665554443 2
Q ss_pred CCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeee
Q 008209 158 GPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVS 237 (574)
Q Consensus 158 ~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~ 237 (574)
.++..-.|||+-.+.+|+.+++.++.|. .+|+|||++|.+|+|+|||++|+|++|
T Consensus 488 ~gi~~q~lHG~r~Q~DrE~al~~~ksG~-------vrILvaTDlaSRGlDv~DiTHV~NyDF------------------ 542 (629)
T KOG0336|consen 488 KGISSQSLHGNREQSDREMALEDFKSGE-------VRILVATDLASRGLDVPDITHVYNYDF------------------ 542 (629)
T ss_pred cccchhhccCChhhhhHHHHHHhhhcCc-------eEEEEEechhhcCCCchhcceeeccCC------------------
Confidence 5677889999999999999999999999 999999999999999999999999998
Q ss_pred eccHhhHHHhcccCCCCCC-CeEEeecccccc
Q 008209 238 PISKASAHQRSGRAGRTQP-GKCFRLYTEKSF 268 (574)
Q Consensus 238 ~is~~~~~QR~GRaGR~~~-G~~~rl~t~~~~ 268 (574)
|-..++|.||+||+||.|. |..+.+++..+.
T Consensus 543 P~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~ 574 (629)
T KOG0336|consen 543 PRNIEEYVHRVGRTGRAGRTGTSISFLTRNDW 574 (629)
T ss_pred CccHHHHHHHhcccccCCCCcceEEEEehhhH
Confidence 8899999999999999996 999999998766
No 41
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.92 E-value=2.3e-24 Score=252.09 Aligned_cols=222 Identities=18% Similarity=0.179 Sum_probs=162.0
Q ss_pred CCCeEEEchHHHHHHHhcC--CCCCCccEEEEecCC-----CCCcchHHHHHHHHHHHhhCCCccEEEEccCC-CHHHHH
Q 008209 8 LLGGRYLTDGMLLREAMTD--PLLERYKVIVLDEAH-----ERTLATDVLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQ 79 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~--~~L~~~~~vIiDE~H-----eR~~~~d~ll~~lk~~~~~~~~~klvlmSATl-~~~~~~ 79 (574)
.++|+++||+.|...|.+. ..|+++++|||||+| .|+.+....+..++.++ ..+.|+|++|||+ |.+.++
T Consensus 99 ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~--~~~~QrIgLSATI~n~eevA 176 (1490)
T PRK09751 99 PPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL--HTSAQRIGLSATVRSASDVA 176 (1490)
T ss_pred CCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC--CCCCeEEEEEeeCCCHHHHH
Confidence 4699999999998877543 369999999999999 47777777777777654 3478999999999 788999
Q ss_pred hhhCCC-CeEEe-C--CeeeceeEEeecCCchh-------------------HHHHHHHHHHHHHhcCCCCCEEEEcCCH
Q 008209 80 GYFYGA-PLMKV-P--GRLHPVEIFYTQEPERD-------------------YLEAAIRTVVQIHMCEPSGDILVFLTGE 136 (574)
Q Consensus 80 ~~f~~~-~~i~~-~--gr~~~v~~~y~~~~~~~-------------------~~~~~~~~~~~i~~~~~~g~iLVFl~~~ 136 (574)
+|+++. ++..+ + .+..++++........+ ........++... ..++++|||+||+
T Consensus 177 ~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i--~~~~stLVFvNSR 254 (1490)
T PRK09751 177 AFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEV--LRHRSTIVFTNSR 254 (1490)
T ss_pred HHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHHHHHH--hcCCCEEEECCCH
Confidence 999743 33222 2 23334443321111000 0001111222222 2468899999999
Q ss_pred HHHHHHHHHHHHHHhhc-----------------CC-------CCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCC
Q 008209 137 EEIEDACRKITKEITNM-----------------GD-------QVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPG 192 (574)
Q Consensus 137 ~ei~~~~~~L~~~~~~~-----------------~~-------~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~ 192 (574)
+.++.++..|++...+. .. ......+..|||+|++++|..+++.+++|.
T Consensus 255 ~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~------- 327 (1490)
T PRK09751 255 GLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGE------- 327 (1490)
T ss_pred HHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCC-------
Confidence 99999999998643210 00 001234678999999999999999999999
Q ss_pred cEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCe
Q 008209 193 RKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGK 258 (574)
Q Consensus 193 ~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~ 258 (574)
.++||||+.+|.||||++|++||+.|. |.|.++|.||+|||||...|.
T Consensus 328 LrvLVATssLELGIDIg~VDlVIq~gs------------------P~sVas~LQRiGRAGR~~gg~ 375 (1490)
T PRK09751 328 LRCVVATSSLELGIDMGAVDLVIQVAT------------------PLSVASGLQRIGRAGHQVGGV 375 (1490)
T ss_pred ceEEEeCcHHHccCCcccCCEEEEeCC------------------CCCHHHHHHHhCCCCCCCCCc
Confidence 999999999999999999999998876 899999999999999975443
No 42
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.91 E-value=2.6e-24 Score=220.56 Aligned_cols=223 Identities=17% Similarity=0.207 Sum_probs=177.4
Q ss_pred CCeEEEchHHHHHHHhcCCCC--CCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCC--CHHHHHhhh-C
Q 008209 9 LGGRYLTDGMLLREAMTDPLL--ERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL--EAEKFQGYF-Y 83 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~l~~~~~L--~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl--~~~~~~~~f-~ 83 (574)
-||+|||||+||++|..+|.+ +++.++|+||++ |.+++.|--.+--.+-...+..|.+++|||. .+..+++.- .
T Consensus 191 mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD-R~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~ 269 (758)
T KOG0343|consen 191 MNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD-RMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLK 269 (758)
T ss_pred CCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH-HHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcC
Confidence 589999999999999999965 689999999999 7777766533333233356678999999998 577888764 3
Q ss_pred CCCeEEeC-----CeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCC
Q 008209 84 GAPLMKVP-----GRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVG 158 (574)
Q Consensus 84 ~~~~i~~~-----gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~ 158 (574)
++..+.+- +.+..+..+|.-.+..+.+. .+.....+....++|||+.|..++..+++...+. .+
T Consensus 270 dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~----~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rl-------rp 338 (758)
T KOG0343|consen 270 DPVYVSVHENAVAATPSNLQQSYVIVPLEDKID----MLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRL-------RP 338 (758)
T ss_pred CCcEEEEeccccccChhhhhheEEEEehhhHHH----HHHHHHHhccccceEEEEehhhHHHHHHHHHHhc-------CC
Confidence 44444442 12223566777666665544 3444445566889999999999999999998763 36
Q ss_pred CeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeee
Q 008209 159 PVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP 238 (574)
Q Consensus 159 ~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~ 238 (574)
++.++.|||++.+..|..++..|.... .-|++||+++++|+|+|.|++||..+. |
T Consensus 339 g~~l~~L~G~~~Q~~R~ev~~~F~~~~-------~~vLF~TDv~aRGLDFpaVdwViQ~DC------------------P 393 (758)
T KOG0343|consen 339 GIPLLALHGTMSQKKRIEVYKKFVRKR-------AVVLFCTDVAARGLDFPAVDWVIQVDC------------------P 393 (758)
T ss_pred CCceeeeccchhHHHHHHHHHHHHHhc-------ceEEEeehhhhccCCCcccceEEEecC------------------c
Confidence 889999999999999999999998766 789999999999999999999996554 9
Q ss_pred ccHhhHHHhcccCCCCCC-CeEEeecccccc
Q 008209 239 ISKASAHQRSGRAGRTQP-GKCFRLYTEKSF 268 (574)
Q Consensus 239 is~~~~~QR~GRaGR~~~-G~~~rl~t~~~~ 268 (574)
...++|+||+||+.|-.. |.|+.+.+..+.
T Consensus 394 edv~tYIHRvGRtAR~~~~G~sll~L~psEe 424 (758)
T KOG0343|consen 394 EDVDTYIHRVGRTARYKERGESLLMLTPSEE 424 (758)
T ss_pred hhHHHHHHHhhhhhcccCCCceEEEEcchhH
Confidence 999999999999999885 999998887663
No 43
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.91 E-value=3.9e-24 Score=246.04 Aligned_cols=223 Identities=20% Similarity=0.203 Sum_probs=161.6
Q ss_pred CCCeEEEchHHHHHHHhcCC---CCCCccEEEEecCC-----CCCcchHHHHHHHHHHHhhCCCccEEEEccCC-CHHHH
Q 008209 8 LLGGRYLTDGMLLREAMTDP---LLERYKVIVLDEAH-----ERTLATDVLFGLLKEVLKNRPDLKLVVMSATL-EAEKF 78 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~---~L~~~~~vIiDE~H-----eR~~~~d~ll~~lk~~~~~~~~~klvlmSATl-~~~~~ 78 (574)
..+|+++|||.|...+.+.. .|.++++|||||+| .|+......+..++.+. .++.|+|++|||+ +.+.+
T Consensus 146 ~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~--~~~~q~IglSATl~~~~~v 223 (876)
T PRK13767 146 PPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELA--GGEFVRIGLSATIEPLEEV 223 (876)
T ss_pred CCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhc--CCCCeEEEEecccCCHHHH
Confidence 46899999999976554322 47899999999999 35656666666666543 3578999999999 57888
Q ss_pred HhhhCCC-------CeEEeCC---eeeceeEEeec-----CCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHH
Q 008209 79 QGYFYGA-------PLMKVPG---RLHPVEIFYTQ-----EPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDAC 143 (574)
Q Consensus 79 ~~~f~~~-------~~i~~~g---r~~~v~~~y~~-----~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~ 143 (574)
++|+.+. ++..+.+ +.+++.+.... .............+.... ..++++|||+||++.++.++
T Consensus 224 a~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i--~~~~~~LVF~nTr~~ae~la 301 (876)
T PRK13767 224 AKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEISEALYETLHELI--KEHRTTLIFTNTRSGAERVL 301 (876)
T ss_pred HHHhcCccccCCCCceEEEccCCCccceEEEeccCccccccccchhHHHHHHHHHHHH--hcCCCEEEEeCCHHHHHHHH
Confidence 8888542 2222222 12222222110 011112222233333333 24678999999999999999
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccce
Q 008209 144 RKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQK 223 (574)
Q Consensus 144 ~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~ 223 (574)
..|.+..... .....+..+||++++++|..+++.+++|. .+|||||+++|+|||||+|++||..|.
T Consensus 302 ~~L~~~~~~~---~~~~~i~~hHg~ls~~~R~~ve~~fk~G~-------i~vLVaTs~Le~GIDip~Vd~VI~~~~---- 367 (876)
T PRK13767 302 YNLRKRFPEE---YDEDNIGAHHSSLSREVRLEVEEKLKRGE-------LKVVVSSTSLELGIDIGYIDLVVLLGS---- 367 (876)
T ss_pred HHHHHhchhh---ccccceeeeeCCCCHHHHHHHHHHHHcCC-------CeEEEECChHHhcCCCCCCcEEEEeCC----
Confidence 9998743210 12457899999999999999999999998 999999999999999999999998776
Q ss_pred eecCCCCcceeeeeeccHhhHHHhcccCCCCC----CCeEEee
Q 008209 224 VYNPRVRVESLLVSPISKASAHQRSGRAGRTQ----PGKCFRL 262 (574)
Q Consensus 224 ~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~----~G~~~rl 262 (574)
|.|.++|.||+|||||.. .|.++..
T Consensus 368 --------------P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 368 --------------PKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred --------------CCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 889999999999999863 3667664
No 44
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.91 E-value=8.1e-24 Score=235.68 Aligned_cols=222 Identities=15% Similarity=0.173 Sum_probs=160.5
Q ss_pred CCCeEEEchHHHHHHHh-cCCCCCCccEEEEecCCC---CCcchHHHHHHHHHHHhhCCCccEEEEccCCCHH---HHHh
Q 008209 8 LLGGRYLTDGMLLREAM-TDPLLERYKVIVLDEAHE---RTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAE---KFQG 80 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~-~~~~L~~~~~vIiDE~He---R~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~---~~~~ 80 (574)
..+|+|+||+.|..... ..-...++++|||||+|. ++.+..-.+..+..+....++.++|++|||.+.. .+..
T Consensus 103 ~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~ 182 (591)
T TIGR01389 103 ELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRE 182 (591)
T ss_pred CCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHH
Confidence 36899999999865332 222356899999999994 3333333333444444555677799999999644 4455
Q ss_pred hhCC-CCeEEeCCeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCC
Q 008209 81 YFYG-APLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGP 159 (574)
Q Consensus 81 ~f~~-~~~i~~~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~ 159 (574)
+++- .+.+.+.+-.. ..++|......+... .+........+++.|||++++++++.+++.|.. .+
T Consensus 183 ~l~~~~~~~~~~~~~r-~nl~~~v~~~~~~~~----~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~---------~g 248 (591)
T TIGR01389 183 LLRLADANEFITSFDR-PNLRFSVVKKNNKQK----FLLDYLKKHRGQSGIIYASSRKKVEELAERLES---------QG 248 (591)
T ss_pred HcCCCCCCeEecCCCC-CCcEEEEEeCCCHHH----HHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHh---------CC
Confidence 5531 22222222111 223332222222222 222222223467899999999999999999975 46
Q ss_pred eEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeec
Q 008209 160 VKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPI 239 (574)
Q Consensus 160 ~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~i 239 (574)
+.+.++||+|+.++|..+++.|..|. .+|||||+++++|||+|+|++||+++. |.
T Consensus 249 ~~~~~~H~~l~~~~R~~i~~~F~~g~-------~~vlVaT~a~~~GID~p~v~~VI~~~~------------------p~ 303 (591)
T TIGR01389 249 ISALAYHAGLSNKVRAENQEDFLYDD-------VKVMVATNAFGMGIDKPNVRFVIHYDM------------------PG 303 (591)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-------CcEEEEechhhccCcCCCCCEEEEcCC------------------CC
Confidence 77899999999999999999999888 999999999999999999999999887 88
Q ss_pred cHhhHHHhcccCCCCC-CCeEEeecccccc
Q 008209 240 SKASAHQRSGRAGRTQ-PGKCFRLYTEKSF 268 (574)
Q Consensus 240 s~~~~~QR~GRaGR~~-~G~~~rl~t~~~~ 268 (574)
|.++|.||+|||||.| +|.|+.+|+..+.
T Consensus 304 s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~ 333 (591)
T TIGR01389 304 NLESYYQEAGRAGRDGLPAEAILLYSPADI 333 (591)
T ss_pred CHHHHhhhhccccCCCCCceEEEecCHHHH
Confidence 9999999999999988 6999999998765
No 45
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=7.5e-24 Score=215.18 Aligned_cols=224 Identities=22% Similarity=0.272 Sum_probs=176.4
Q ss_pred cCCCeEEEchHHHHHHHhc-CCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCC--HHHHHhhhC
Q 008209 7 VLLGGRYLTDGMLLREAMT-DPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE--AEKFQGYFY 83 (574)
Q Consensus 7 ~~~~I~~~T~g~Ll~~l~~-~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~--~~~~~~~f~ 83 (574)
.+..|+|||||+|+.++.- --.+.+++++||||++ |..++.+.-+.-......||+.|.+++|||+. ++.+++-+.
T Consensus 345 ~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEad-rmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L 423 (731)
T KOG0339|consen 345 EGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEAD-RMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDIL 423 (731)
T ss_pred cCCeEEEechHHHHHHHHhhcccceeeeEEEEechh-hhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHh
Confidence 3578999999999999954 4579999999999999 78888887665444445889999999999994 677776555
Q ss_pred CCCeEEeCCe----eecee-EEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCC
Q 008209 84 GAPLMKVPGR----LHPVE-IFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVG 158 (574)
Q Consensus 84 ~~~~i~~~gr----~~~v~-~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~ 158 (574)
.-||-.+.|. ...+. +.+.-......+.-.+ .++......|++|+|++.+.+.++++..|.- .
T Consensus 424 ~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~---~~L~~f~S~gkvlifVTKk~~~e~i~a~Lkl---------k 491 (731)
T KOG0339|consen 424 SDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLL---RHLVEFSSEGKVLIFVTKKADAEEIAANLKL---------K 491 (731)
T ss_pred cCCeeEEEeehhccccchhheeeeccCcHHHHHHHH---HHhhhhccCCcEEEEEeccCCHHHHHHHhcc---------c
Confidence 5565444442 11221 1222222233333222 2333335689999999999999999998863 6
Q ss_pred CeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeee
Q 008209 159 PVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP 238 (574)
Q Consensus 159 ~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~ 238 (574)
++.|..+||.+.+.+|.+++..|+++. ..|++||++|++|+|||+++.||++++ .
T Consensus 492 ~~~v~llhgdkdqa~rn~~ls~fKkk~-------~~VlvatDvaargldI~~ikTVvnyD~------------------a 546 (731)
T KOG0339|consen 492 GFNVSLLHGDKDQAERNEVLSKFKKKR-------KPVLVATDVAARGLDIPSIKTVVNYDF------------------A 546 (731)
T ss_pred cceeeeecCchhhHHHHHHHHHHhhcC-------CceEEEeeHhhcCCCccccceeecccc------------------c
Confidence 789999999999999999999999887 899999999999999999999999887 4
Q ss_pred ccHhhHHHhcccCCCCCC-CeEEeecccccc
Q 008209 239 ISKASAHQRSGRAGRTQP-GKCFRLYTEKSF 268 (574)
Q Consensus 239 is~~~~~QR~GRaGR~~~-G~~~rl~t~~~~ 268 (574)
-+...+.||.||+||.+. |+.|.|.|+.+-
T Consensus 547 rdIdththrigrtgRag~kGvayTlvTeKDa 577 (731)
T KOG0339|consen 547 RDIDTHTHRIGRTGRAGEKGVAYTLVTEKDA 577 (731)
T ss_pred chhHHHHHHhhhcccccccceeeEEechhhH
Confidence 567789999999999995 999999999876
No 46
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=8.4e-24 Score=215.15 Aligned_cols=222 Identities=20% Similarity=0.283 Sum_probs=166.4
Q ss_pred CCCeEEEchHHHHHHHhcCC--CCCCccEEEEecCCCCCcchHHHHHHHHHHHhhC-CCccEEEEccCCC--HHHHHhhh
Q 008209 8 LLGGRYLTDGMLLREAMTDP--LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR-PDLKLVVMSATLE--AEKFQGYF 82 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~--~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~-~~~klvlmSATl~--~~~~~~~f 82 (574)
.++|+++|||+|+++|.+.| .|+++.++|+||++ |.++..|- .-++.+++.. .+.|.+++||||. ++.+.+.-
T Consensus 302 ~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD-RMLeegFa-demnEii~lcpk~RQTmLFSATMteeVkdL~slS 379 (691)
T KOG0338|consen 302 RPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD-RMLEEGFA-DEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLS 379 (691)
T ss_pred CCCEEEecchhHHHHhccCCCccccceeEEEechHH-HHHHHHHH-HHHHHHHHhccccccceeehhhhHHHHHHHHHhh
Confidence 58999999999999999988 48999999999999 66665553 4566666644 4678999999994 66776654
Q ss_pred CCCCe-EEeC-Ceeec--eeEEeec-CCchhH-HHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCC
Q 008209 83 YGAPL-MKVP-GRLHP--VEIFYTQ-EPERDY-LEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQ 156 (574)
Q Consensus 83 ~~~~~-i~~~-gr~~~--v~~~y~~-~~~~~~-~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~ 156 (574)
-+-|+ |.++ ....+ +...|.. .+..+- .++.+..++. ..-...++||+.+++.++++.-.|-
T Consensus 380 L~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~---rtf~~~~ivFv~tKk~AHRl~IllG--------- 447 (691)
T KOG0338|consen 380 LNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLIT---RTFQDRTIVFVRTKKQAHRLRILLG--------- 447 (691)
T ss_pred cCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHH---HhcccceEEEEehHHHHHHHHHHHH---------
Confidence 33333 2222 11111 1111221 111111 1112222221 1236789999999999998876664
Q ss_pred CCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeee
Q 008209 157 VGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLV 236 (574)
Q Consensus 157 ~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~ 236 (574)
..++.+.-+||+|++++|...++.|+.+. ..|+|||++|++|+||++|.+|||+..
T Consensus 448 Llgl~agElHGsLtQ~QRlesL~kFk~~e-------idvLiaTDvAsRGLDI~gV~tVINy~m----------------- 503 (691)
T KOG0338|consen 448 LLGLKAGELHGSLTQEQRLESLEKFKKEE-------IDVLIATDVASRGLDIEGVQTVINYAM----------------- 503 (691)
T ss_pred HhhchhhhhcccccHHHHHHHHHHHHhcc-------CCEEEEechhhccCCccceeEEEeccC-----------------
Confidence 25788999999999999999999999988 999999999999999999999999887
Q ss_pred eeccHhhHHHhcccCCCCCC-CeEEeecccccc
Q 008209 237 SPISKASAHQRSGRAGRTQP-GKCFRLYTEKSF 268 (574)
Q Consensus 237 ~~is~~~~~QR~GRaGR~~~-G~~~rl~t~~~~ 268 (574)
|.+...|+||+||+.|.|. |..+.|..+.+-
T Consensus 504 -P~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dR 535 (691)
T KOG0338|consen 504 -PKTIEHYLHRVGRTARAGRAGRSVTLVGESDR 535 (691)
T ss_pred -chhHHHHHHHhhhhhhcccCcceEEEeccccH
Confidence 9999999999999999995 999999988753
No 47
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.90 E-value=6.4e-23 Score=223.92 Aligned_cols=385 Identities=19% Similarity=0.242 Sum_probs=259.2
Q ss_pred CCCeEEEchHH---HHHHHhcCC-CCCCccEEEEecCC----CCCcchHHHHHHHHHHHh-hCCCccEEEEccCC-CHHH
Q 008209 8 LLGGRYLTDGM---LLREAMTDP-LLERYKVIVLDEAH----ERTLATDVLFGLLKEVLK-NRPDLKLVVMSATL-EAEK 77 (574)
Q Consensus 8 ~~~I~~~T~g~---Ll~~l~~~~-~L~~~~~vIiDE~H----eR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl-~~~~ 77 (574)
.++|+++||+- +.|.-..|. +.+.+.+||||||| +||...+.+++...+... ....+|||++|||+ |.+.
T Consensus 211 ~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~eD 290 (1230)
T KOG0952|consen 211 DTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNYED 290 (1230)
T ss_pred hcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHH
Confidence 37999999963 445444443 57899999999999 999999999999887665 45689999999999 8999
Q ss_pred HHhhhCC---CCeEEeCCeeecee--EEeecCCc-------hhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHH
Q 008209 78 FQGYFYG---APLMKVPGRLHPVE--IFYTQEPE-------RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRK 145 (574)
Q Consensus 78 ~~~~f~~---~~~i~~~gr~~~v~--~~y~~~~~-------~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~ 145 (574)
++.|++- ..++..+++..||. ..+.-.+. ...-+.+...+.+.+ .++.+++|||+++.+..+.++.
T Consensus 291 vA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~--~~g~qVlvFvhsR~~Ti~tA~~ 368 (1230)
T KOG0952|consen 291 VARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFL--QEGHQVLVFVHSRNETIRTAKK 368 (1230)
T ss_pred HHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHH--HcCCeEEEEEecChHHHHHHHH
Confidence 9999975 34677777666654 33322111 122233444555555 4689999999999999999999
Q ss_pred HHHHHhhcCCC-----CC---------CeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCe
Q 008209 146 ITKEITNMGDQ-----VG---------PVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGI 211 (574)
Q Consensus 146 L~~~~~~~~~~-----~~---------~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v 211 (574)
|.+.....+.. .+ ...+..+|+||...+|..+...|..|. .+|++||.++++|+++|+-
T Consensus 369 l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~-------i~vL~cTaTLAwGVNLPA~ 441 (1230)
T KOG0952|consen 369 LRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGH-------IKVLCCTATLAWGVNLPAY 441 (1230)
T ss_pred HHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCC-------ceEEEecceeeeccCCcce
Confidence 98755432111 01 134667999999999999999999998 9999999999999999999
Q ss_pred EEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC---CCeEEeeccccc-----------------cccc
Q 008209 212 VYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ---PGKCFRLYTEKS-----------------FNND 271 (574)
Q Consensus 212 ~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~---~G~~~rl~t~~~-----------------~~~~ 271 (574)
.++| ..++.||+..|. ..-.+..+..|.-|||||++ .|..+-+=+.+. +...
T Consensus 442 aViI----KGT~~ydsskg~----f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~ 513 (1230)
T KOG0952|consen 442 AVII----KGTQVYDSSKGS----FVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPC 513 (1230)
T ss_pred EEEe----cCCcccccccCc----eeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHH
Confidence 8888 888999998874 34567789999999999998 466665544322 1122
Q ss_pred cCCCCcchhccCC---chhhHHHHhh------cCCCCcccc----C-CCCCCc-----HHHHHHHHHHHHHcCCc--cCC
Q 008209 272 LQPQTYPEILRSN---LANTVLTLKK------LGIDDLVHF----D-FMDPPA-----PETLMRALEVLNYLGAL--DDD 330 (574)
Q Consensus 272 l~~~~~pei~~~~---l~~~~L~l~~------~~~~~~~~~----~-~l~~P~-----~~~l~~al~~L~~lgal--d~~ 330 (574)
+.++-..||.-.. ++..+-.++. ++. ++..+ . ...-|. .+-+..++..|.....+ |.+
T Consensus 514 L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~K-NP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~~~qmi~~D~~ 592 (1230)
T KOG0952|consen 514 LIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRK-NPMAYGISYEELEPDPRLESHRRELCLVAAMELDKVQMIRFDER 592 (1230)
T ss_pred HHHhhhhheeeceeecHHHHHHHhhceeEEEEecc-ChHHhhhhhhcccCCchHHHHHHHHHHHHHHHhhhhheEEEecc
Confidence 3344455555443 3333333332 111 11111 1 112222 23345566677666444 554
Q ss_pred C---CcChhhhhhccCCCCHHHHHHHHhccC-CCCchhhHhHHhhccCCC-cccCChhHHHHHHHHHH------hhCCCC
Q 008209 331 G---NLTEMGEKMSEFPLDPQMSKMLVESPK-YNCSNEILSISAMLSVPN-CFVRPREAQKAADEAKA------RFGHID 399 (574)
Q Consensus 331 ~---~lT~lG~~~~~lpl~p~~~~~ll~~~~-~~c~~~~~~i~a~ls~~~-~f~~~~~~~~~~~~~~~------~~~~~~ 399 (574)
+ ..|++||.|+.+++....-+.+..... +--.++++.|+++-++=+ +=++ .+..++.++... .|....
T Consensus 593 t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ik~R-~eE~k~l~el~~~~~~~~~~~~~~ 671 (1230)
T KOG0952|consen 593 TGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQIKVR-EEEKKELKELNEDSCEKYPFGGEK 671 (1230)
T ss_pred cceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhhhhhh-hhhHHHHHHHHhcccccccccccc
Confidence 4 589999999999999999999999887 555677776666544311 1111 112222222222 222335
Q ss_pred CcHHHHHHHHHH
Q 008209 400 GDHLTLLNVYHA 411 (574)
Q Consensus 400 sD~l~~l~~~~~ 411 (574)
|+.-.++++|..
T Consensus 672 gk~nil~q~~Is 683 (1230)
T KOG0952|consen 672 GKVNILLQAYIS 683 (1230)
T ss_pred hhHHHHHHhhhh
Confidence 777777777753
No 48
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=1.6e-23 Score=204.91 Aligned_cols=224 Identities=21% Similarity=0.278 Sum_probs=166.9
Q ss_pred ccCCCeEEEchHHHHHHHhcCC-----CCCCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCCHHHHH
Q 008209 6 CVLLGGRYLTDGMLLREAMTDP-----LLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLEAEKFQ 79 (574)
Q Consensus 6 ~~~~~I~~~T~g~Ll~~l~~~~-----~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~~~~~~ 79 (574)
+...|++++|||+|-.++.+++ .+.++.++|+|||+ |-+..++- ..|.-+.. ..+..|.+++|||++ +.+.
T Consensus 123 ~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD-rvL~~~f~-d~L~~i~e~lP~~RQtLlfSATit-d~i~ 199 (442)
T KOG0340|consen 123 SDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD-RVLAGCFP-DILEGIEECLPKPRQTLLFSATIT-DTIK 199 (442)
T ss_pred ccCCCeEecCccccccccccCCccchhhhhceeeEEecchh-hhhccchh-hHHhhhhccCCCccceEEEEeehh-hHHH
Confidence 3458999999999999998874 48999999999999 56665543 22333333 344569999999994 2233
Q ss_pred hhhCCCCeEE-------e-CCeeec--eeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHH
Q 008209 80 GYFYGAPLMK-------V-PGRLHP--VEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKE 149 (574)
Q Consensus 80 ~~f~~~~~i~-------~-~gr~~~--v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~ 149 (574)
..|+ +|+-. . +|-..+ ....|...+.. -.+..+-.++.....++.+.+++|+++..+++.+...|..
T Consensus 200 ql~~-~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~-vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~- 276 (442)
T KOG0340|consen 200 QLFG-CPITKSIAFELEVIDGVSTVETLYQGYILVSID-VKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKN- 276 (442)
T ss_pred Hhhc-CCcccccceEEeccCCCCchhhhhhheeecchh-hhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhh-
Confidence 3332 33211 1 111111 22334333321 1122222344444445789999999999999999999976
Q ss_pred HhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCC
Q 008209 150 ITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRV 229 (574)
Q Consensus 150 ~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~ 229 (574)
..+.+..+||.+++.+|...+..|+.+. .+|++||++|++|+|||.|..|||+++
T Consensus 277 --------le~r~~~lHs~m~Q~eR~~aLsrFrs~~-------~~iliaTDVAsRGLDIP~V~LVvN~di---------- 331 (442)
T KOG0340|consen 277 --------LEVRVVSLHSQMPQKERLAALSRFRSNA-------ARILIATDVASRGLDIPTVELVVNHDI---------- 331 (442)
T ss_pred --------hceeeeehhhcchHHHHHHHHHHHhhcC-------ccEEEEechhhcCCCCCceeEEEecCC----------
Confidence 5789999999999999999999999998 999999999999999999999999888
Q ss_pred CcceeeeeeccHhhHHHhcccCCCCCC-CeEEeecccccc
Q 008209 230 RVESLLVSPISKASAHQRSGRAGRTQP-GKCFRLYTEKSF 268 (574)
Q Consensus 230 ~~~~l~~~~is~~~~~QR~GRaGR~~~-G~~~rl~t~~~~ 268 (574)
|-.+..|+||+||+.|.|. |..+.++++.+.
T Consensus 332 --------Pr~P~~yiHRvGRtARAGR~G~aiSivt~rDv 363 (442)
T KOG0340|consen 332 --------PRDPKDYIHRVGRTARAGRKGMAISIVTQRDV 363 (442)
T ss_pred --------CCCHHHHHHhhcchhcccCCcceEEEechhhH
Confidence 8889999999999999996 999999987655
No 49
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=1.7e-23 Score=201.82 Aligned_cols=221 Identities=19% Similarity=0.223 Sum_probs=174.8
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCC--HHHH-HhhhC
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE--AEKF-QGYFY 83 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~--~~~~-~~~f~ 83 (574)
.-|++++|||++++.+...- .|++...+|+||++. -+..||--.+-+.+.-..++.|+++.|||.. +..| .+|+.
T Consensus 203 ~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADK-lLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~ 281 (459)
T KOG0326|consen 203 TVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADK-LLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLK 281 (459)
T ss_pred ceEEEEcCChhHHHHHhcccccchhceEEEechhhh-hhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhcc
Confidence 46899999999999887654 699999999999993 5666665444333334667889999999985 4555 45665
Q ss_pred CCCeEEeCCee--eceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeE
Q 008209 84 GAPLMKVPGRL--HPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVK 161 (574)
Q Consensus 84 ~~~~i~~~gr~--~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~ 161 (574)
++-.|..-... .-|..+|....+...+. +++++..- ..-.+.+|||++...++.+++.+.+ .++.
T Consensus 282 kPy~INLM~eLtl~GvtQyYafV~e~qKvh-CLntLfsk---LqINQsIIFCNS~~rVELLAkKITe---------lGys 348 (459)
T KOG0326|consen 282 KPYEINLMEELTLKGVTQYYAFVEERQKVH-CLNTLFSK---LQINQSIIFCNSTNRVELLAKKITE---------LGYS 348 (459)
T ss_pred Ccceeehhhhhhhcchhhheeeechhhhhh-hHHHHHHH---hcccceEEEeccchHhHHHHHHHHh---------ccch
Confidence 55455443322 33667776655554443 33444332 2356799999999999999999987 5788
Q ss_pred EEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccH
Q 008209 162 VVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISK 241 (574)
Q Consensus 162 v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~ 241 (574)
++.+|+.|.++.|.+||..|++|. .+.+|||+..-+||||++|.+|||+++ |-+.
T Consensus 349 cyyiHakM~Q~hRNrVFHdFr~G~-------crnLVctDL~TRGIDiqavNvVINFDf------------------pk~a 403 (459)
T KOG0326|consen 349 CYYIHAKMAQEHRNRVFHDFRNGK-------CRNLVCTDLFTRGIDIQAVNVVINFDF------------------PKNA 403 (459)
T ss_pred hhHHHHHHHHhhhhhhhhhhhccc-------cceeeehhhhhcccccceeeEEEecCC------------------CCCH
Confidence 999999999999999999999999 999999999999999999999999999 8888
Q ss_pred hhHHHhcccCCCCC-CCeEEeeccccc
Q 008209 242 ASAHQRSGRAGRTQ-PGKCFRLYTEKS 267 (574)
Q Consensus 242 ~~~~QR~GRaGR~~-~G~~~rl~t~~~ 267 (574)
++|.||.||+||-| +|.++.|.+-++
T Consensus 404 EtYLHRIGRsGRFGhlGlAInLityed 430 (459)
T KOG0326|consen 404 ETYLHRIGRSGRFGHLGLAINLITYED 430 (459)
T ss_pred HHHHHHccCCccCCCcceEEEEEehhh
Confidence 99999999999999 599999987543
No 50
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.89 E-value=3.4e-22 Score=222.22 Aligned_cols=265 Identities=17% Similarity=0.127 Sum_probs=161.0
Q ss_pred CCCeEEEchHHHHHHHhcC-------------CCCCCccEEEEecCCCCCcchHHHHHHHHHHHhh--CCCccEEEEccC
Q 008209 8 LLGGRYLTDGMLLREAMTD-------------PLLERYKVIVLDEAHERTLATDVLFGLLKEVLKN--RPDLKLVVMSAT 72 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~-------------~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~--~~~~klvlmSAT 72 (574)
+.+|+|+|..++.+.++.. ..|++++++||||||..+...+.+..+++.+... ..++|+++||||
T Consensus 135 ~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT 214 (844)
T TIGR02621 135 RPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTAT 214 (844)
T ss_pred CCcEEEECHHHHcCCccccccccccccccchhhhhccceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecC
Confidence 4689999966555544421 1378999999999996655566555555543111 113799999999
Q ss_pred CCH--HHHHhhhC-CCCeEEeCCeeece--eEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHH
Q 008209 73 LEA--EKFQGYFY-GAPLMKVPGRLHPV--EIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKIT 147 (574)
Q Consensus 73 l~~--~~~~~~f~-~~~~i~~~gr~~~v--~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~ 147 (574)
++. ..+...+. +...+.+..+.... ..+|.+......+...+..+..+.. ..++++||||||+++++.+++.|.
T Consensus 215 ~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~v~v~~e~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~ 293 (844)
T TIGR02621 215 SRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKLVPPSDEKFLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLP 293 (844)
T ss_pred CCccHHHHHHHHccCCceeecccccccccceEEEEecChHHHHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHH
Confidence 953 34444443 22223332221111 1223333333333333444433332 457899999999999999999997
Q ss_pred HHHhhcCCCCCCeEEEEcCCCCCHHHHh-----hhcCCCCC----CCCCCCCCCcEEEEecccccccccCCCeEEEEcCC
Q 008209 148 KEITNMGDQVGPVKVVPLYSTLPPAMQQ-----KIFEPAPP----PSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPG 218 (574)
Q Consensus 148 ~~~~~~~~~~~~~~v~~lhs~l~~~~q~-----~v~~~~~~----g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g 218 (574)
+ ..+ ..+||.|++.+|. ++++.|.+ |......+..+|+|||+++|+||||+. .+||+.
T Consensus 294 ~---------~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d- 360 (844)
T TIGR02621 294 K---------EKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCD- 360 (844)
T ss_pred h---------cCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEEC-
Confidence 6 222 8999999999999 77777765 210001122689999999999999997 666631
Q ss_pred cccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCC-C-eEEeeccccccccccCCCCcchhccCCchhhHHHHhhcC
Q 008209 219 FAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQP-G-KCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLG 296 (574)
Q Consensus 219 ~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~-G-~~~rl~t~~~~~~~l~~~~~pei~~~~l~~~~L~l~~~~ 296 (574)
....++|+||+||+||.|. | ..+.+++.+.-...-.....|+++...+..+.+....+|
T Consensus 361 -------------------~aP~esyIQRiGRtgR~G~~~~~~i~vv~~~~~~~~~~~vY~~~~l~~t~~~L~~~~~~~~ 421 (844)
T TIGR02621 361 -------------------LAPFESMQQRFGRVNRFGELQACQIAVVHLDLGKDQDFDVYGKKIDKSTWSTLKKLQQLKG 421 (844)
T ss_pred -------------------CCCHHHHHHHhcccCCCCCCCCceEEEEeeccCCCcccCCCCHHHHHHHHHHHHHHHhccc
Confidence 1235799999999999885 3 323443321110011112247788777766665555555
Q ss_pred CCCccccCC
Q 008209 297 IDDLVHFDF 305 (574)
Q Consensus 297 ~~~~~~~~~ 305 (574)
..+...|++
T Consensus 422 ~~~~~al~~ 430 (844)
T TIGR02621 422 KNKRAALGV 430 (844)
T ss_pred cCCHHHHhh
Confidence 444433333
No 51
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=3.6e-23 Score=213.83 Aligned_cols=224 Identities=18% Similarity=0.177 Sum_probs=166.4
Q ss_pred cCCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcc-hHHHHHHHHHHHhh----CCCccEEEEccCCC--HHHH
Q 008209 7 VLLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLA-TDVLFGLLKEVLKN----RPDLKLVVMSATLE--AEKF 78 (574)
Q Consensus 7 ~~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~-~d~ll~~lk~~~~~----~~~~klvlmSATl~--~~~~ 78 (574)
.+-+|+|+|+|.|...+.... .|+++.++||||++ |.++ +.|.-.+=+.+... ....|-+++|||.+ .+.+
T Consensus 201 ~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEAD-rMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l 279 (482)
T KOG0335|consen 201 RGCDILVATPGRLKDLIERGKISLDNCKFLVLDEAD-RMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRL 279 (482)
T ss_pred cCccEEEecCchhhhhhhcceeehhhCcEEEecchH-HhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhh
Confidence 357999999999999987655 69999999999999 6777 55544433332221 13678999999994 5556
Q ss_pred HhhhCCC-C----eEEeCCeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCC-----CEEEEcCCHHHHHHHHHHHHH
Q 008209 79 QGYFYGA-P----LMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSG-----DILVFLTGEEEIEDACRKITK 148 (574)
Q Consensus 79 ~~~f~~~-~----~i~~~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g-----~iLVFl~~~~ei~~~~~~L~~ 148 (574)
..+|... . +..+.+....+........+.+.....+..+.........+ .++||+.+++.+..++..|..
T Consensus 280 ~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~ 359 (482)
T KOG0335|consen 280 AADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSS 359 (482)
T ss_pred HHHHhhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhc
Confidence 6665422 1 22222222223333333333334333333222222111234 799999999999999999976
Q ss_pred HHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCC
Q 008209 149 EITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPR 228 (574)
Q Consensus 149 ~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~ 228 (574)
..+...++||..++.+|.+.++.|+.|. ..|+||||||++|+|||+|++||++.+
T Consensus 360 ---------~~~~~~sIhg~~tq~er~~al~~Fr~g~-------~pvlVaT~VaaRGlDi~~V~hVInyDm--------- 414 (482)
T KOG0335|consen 360 ---------NGYPAKSIHGDRTQIEREQALNDFRNGK-------APVLVATNVAARGLDIPNVKHVINYDM--------- 414 (482)
T ss_pred ---------CCCCceeecchhhhhHHHHHHHHhhcCC-------cceEEEehhhhcCCCCCCCceeEEeec---------
Confidence 6788999999999999999999999998 899999999999999999999999887
Q ss_pred CCcceeeeeeccHhhHHHhcccCCCCCC-CeEEeeccc
Q 008209 229 VRVESLLVSPISKASAHQRSGRAGRTQP-GKCFRLYTE 265 (574)
Q Consensus 229 ~~~~~l~~~~is~~~~~QR~GRaGR~~~-G~~~rl~t~ 265 (574)
|..-.+|+||.||+||.|. |....|+..
T Consensus 415 ---------P~d~d~YvHRIGRTGR~Gn~G~atsf~n~ 443 (482)
T KOG0335|consen 415 ---------PADIDDYVHRIGRTGRVGNGGRATSFFNE 443 (482)
T ss_pred ---------CcchhhHHHhccccccCCCCceeEEEecc
Confidence 7788899999999999995 999999883
No 52
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=4.2e-23 Score=203.19 Aligned_cols=227 Identities=19% Similarity=0.212 Sum_probs=173.6
Q ss_pred CCeEEEchHHHHHHHhc--CCCCCCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCC--HHHHHh-hh
Q 008209 9 LGGRYLTDGMLLREAMT--DPLLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLE--AEKFQG-YF 82 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~l~~--~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~--~~~~~~-~f 82 (574)
.+|+++|||.+++++.. --.+.++.++|+||++. +++++-+-...-++.. ..++.|++++|||.+ ...|+. ..
T Consensus 208 eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~-Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kiv 286 (477)
T KOG0332|consen 208 EQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADV-MIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIV 286 (477)
T ss_pred hheeeCCCccHHHHHHHHHhhChhhceEEEecchhh-hhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhc
Confidence 67999999999999976 23588999999999993 4444322221112222 345899999999994 456654 44
Q ss_pred CCCCeEEeCCe---eeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCC
Q 008209 83 YGAPLMKVPGR---LHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGP 159 (574)
Q Consensus 83 ~~~~~i~~~gr---~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~ 159 (574)
.++.++.+..+ .++|..+|...+.++-.-.+ +..+.....-|+.+|||.|++.+..++..+.+ .+
T Consensus 287 pn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~---l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~---------~G 354 (477)
T KOG0332|consen 287 PNANVIILKREELALDNIKQLYVLCACRDDKYQA---LVNLYGLLTIGQSIIFCHTKATAMWLYEEMRA---------EG 354 (477)
T ss_pred CCCceeeeehhhccccchhhheeeccchhhHHHH---HHHHHhhhhhhheEEEEeehhhHHHHHHHHHh---------cC
Confidence 56666655443 56788888887765433222 33333334578999999999999999999986 57
Q ss_pred eEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeec
Q 008209 160 VKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPI 239 (574)
Q Consensus 160 ~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~i 239 (574)
..|-.+||.|.-++|..+.+.|+.|. -||+|+||+.++|||++.|.+|||+++.-- |+ ...
T Consensus 355 h~V~~l~G~l~~~~R~~ii~~Fr~g~-------~kVLitTnV~ARGiDv~qVs~VvNydlP~~--~~----------~~p 415 (477)
T KOG0332|consen 355 HQVSLLHGDLTVEQRAAIIDRFREGK-------EKVLITTNVCARGIDVAQVSVVVNYDLPVK--YT----------GEP 415 (477)
T ss_pred ceeEEeeccchhHHHHHHHHHHhcCc-------ceEEEEechhhcccccceEEEEEecCCccc--cC----------CCC
Confidence 88999999999999999999999999 999999999999999999999999988221 11 135
Q ss_pred cHhhHHHhcccCCCCCC-CeEEeeccccc
Q 008209 240 SKASAHQRSGRAGRTQP-GKCFRLYTEKS 267 (574)
Q Consensus 240 s~~~~~QR~GRaGR~~~-G~~~rl~t~~~ 267 (574)
+.+.|.||.||+||-|. |..+.+.....
T Consensus 416 D~etYlHRiGRtGRFGkkG~a~n~v~~~~ 444 (477)
T KOG0332|consen 416 DYETYLHRIGRTGRFGKKGLAINLVDDKD 444 (477)
T ss_pred CHHHHHHHhcccccccccceEEEeecccC
Confidence 77899999999999996 99999866543
No 53
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=1.5e-22 Score=207.13 Aligned_cols=243 Identities=20% Similarity=0.304 Sum_probs=167.4
Q ss_pred cCCCeEEEchHHHHHHHhcCC--CCCCccEEEEecCC---CCCcchHH--HHHHHHHHHh-hCC------CccEEEEccC
Q 008209 7 VLLGGRYLTDGMLLREAMTDP--LLERYKVIVLDEAH---ERTLATDV--LFGLLKEVLK-NRP------DLKLVVMSAT 72 (574)
Q Consensus 7 ~~~~I~~~T~g~Ll~~l~~~~--~L~~~~~vIiDE~H---eR~~~~d~--ll~~lk~~~~-~~~------~~klvlmSAT 72 (574)
.+-||+++|||+|+++|.+.. .++++.+||+||++ |-|..-|+ ++..+-.... ... .++-+++|||
T Consensus 261 KGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSAT 340 (708)
T KOG0348|consen 261 KGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSAT 340 (708)
T ss_pred cCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhh
Confidence 467899999999999999865 47899999999999 32222222 3333321111 112 3678899999
Q ss_pred CC--HHHHHhhhCCCCe-EEeCC---eee-------------------------ceeEEeecCCchhHHHHHHHHHHHHH
Q 008209 73 LE--AEKFQGYFYGAPL-MKVPG---RLH-------------------------PVEIFYTQEPERDYLEAAIRTVVQIH 121 (574)
Q Consensus 73 l~--~~~~~~~f~~~~~-i~~~g---r~~-------------------------~v~~~y~~~~~~~~~~~~~~~~~~i~ 121 (574)
+. +..+++.--..|+ |..+. ... ....+|.-.|..--+-.....+....
T Consensus 341 Ltd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~ 420 (708)
T KOG0348|consen 341 LTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKV 420 (708)
T ss_pred hHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHh
Confidence 93 6777764333332 22100 000 01223433443333344445555666
Q ss_pred hcCCCCCEEEEcCCHHHHHHHHHHHHHHHhh----cC---------CCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCC
Q 008209 122 MCEPSGDILVFLTGEEEIEDACRKITKEITN----MG---------DQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEG 188 (574)
Q Consensus 122 ~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~----~~---------~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~ 188 (574)
+.++.-+++||+.+.+.++.-+..+.+.+.. -. .-..+..++-|||+|++++|..+|+.|....
T Consensus 421 k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~--- 497 (708)
T KOG0348|consen 421 KFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSR--- 497 (708)
T ss_pred hhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhcccc---
Confidence 6566778999999999999988888775433 00 0123567999999999999999999999877
Q ss_pred CCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCC-CeEEe--eccc
Q 008209 189 GPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQP-GKCFR--LYTE 265 (574)
Q Consensus 189 ~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~-G~~~r--l~t~ 265 (574)
+-|++||++|++|+|+|+|+.|| .||+ |-|.++|.||+||+.|.|. |.... +-++
T Consensus 498 ----~~VLLcTDVAaRGLDlP~V~~vV--------QYd~----------P~s~adylHRvGRTARaG~kG~alLfL~P~E 555 (708)
T KOG0348|consen 498 ----RAVLLCTDVAARGLDLPHVGLVV--------QYDP----------PFSTADYLHRVGRTARAGEKGEALLFLLPSE 555 (708)
T ss_pred ----ceEEEehhhhhccCCCCCcCeEE--------EeCC----------CCCHHHHHHHhhhhhhccCCCceEEEecccH
Confidence 88999999999999999999999 4655 8999999999999988884 66544 4455
Q ss_pred cccccccCC
Q 008209 266 KSFNNDLQP 274 (574)
Q Consensus 266 ~~~~~~l~~ 274 (574)
.+|.+.+..
T Consensus 556 aey~~~l~~ 564 (708)
T KOG0348|consen 556 AEYVNYLKK 564 (708)
T ss_pred HHHHHHHHh
Confidence 555433333
No 54
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.88 E-value=7.6e-22 Score=225.28 Aligned_cols=211 Identities=15% Similarity=0.209 Sum_probs=153.9
Q ss_pred CCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhh---CCC
Q 008209 9 LGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYF---YGA 85 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f---~~~ 85 (574)
.+|+|+|+..+ ..+-.+.++++|||||+|..+... ...+....++.++++||||+....+...+ .+.
T Consensus 555 ~dIVIGTp~ll----~~~v~f~~L~llVIDEahrfgv~~------~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~ 624 (926)
T TIGR00580 555 IDILIGTHKLL----QKDVKFKDLGLLIIDEEQRFGVKQ------KEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDL 624 (926)
T ss_pred ceEEEchHHHh----hCCCCcccCCEEEeecccccchhH------HHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCc
Confidence 68999999533 345568999999999999743322 11222245688999999998766554322 233
Q ss_pred CeEEeC-CeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEE
Q 008209 86 PLMKVP-GRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVP 164 (574)
Q Consensus 86 ~~i~~~-gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~ 164 (574)
.++..+ ....|++.++.+... ..+. ..+.... ..+++++||+|+.++++.+++.|.+.. ++..+..
T Consensus 625 s~I~~~p~~R~~V~t~v~~~~~-~~i~---~~i~~el--~~g~qv~if~n~i~~~e~l~~~L~~~~-------p~~~v~~ 691 (926)
T TIGR00580 625 SIIATPPEDRLPVRTFVMEYDP-ELVR---EAIRREL--LRGGQVFYVHNRIESIEKLATQLRELV-------PEARIAI 691 (926)
T ss_pred EEEecCCCCccceEEEEEecCH-HHHH---HHHHHHH--HcCCeEEEEECCcHHHHHHHHHHHHhC-------CCCeEEE
Confidence 444443 233567776654322 1111 1222222 247899999999999999999998632 4578999
Q ss_pred cCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhH
Q 008209 165 LYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASA 244 (574)
Q Consensus 165 lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~ 244 (574)
+||+|++.+|.++++.|.+|. .+|+|||+++|+|||||++++||..+ +. ..+.+++
T Consensus 692 lHG~m~~~eRe~im~~F~~Gk-------~~ILVaT~iie~GIDIp~v~~VIi~~--------a~---------~~gls~l 747 (926)
T TIGR00580 692 AHGQMTENELEEVMLEFYKGE-------FQVLVCTTIIETGIDIPNANTIIIER--------AD---------KFGLAQL 747 (926)
T ss_pred ecCCCCHHHHHHHHHHHHcCC-------CCEEEECChhhcccccccCCEEEEec--------CC---------CCCHHHH
Confidence 999999999999999999998 99999999999999999999999433 22 1234689
Q ss_pred HHhcccCCCCC-CCeEEeecccc
Q 008209 245 HQRSGRAGRTQ-PGKCFRLYTEK 266 (574)
Q Consensus 245 ~QR~GRaGR~~-~G~~~rl~t~~ 266 (574)
.||+||+||.+ .|.||.+++..
T Consensus 748 ~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 748 YQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred HHHhcCCCCCCCCeEEEEEECCc
Confidence 99999999988 59999998754
No 55
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.88 E-value=7.8e-22 Score=229.78 Aligned_cols=211 Identities=16% Similarity=0.203 Sum_probs=150.4
Q ss_pred CCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHH---hhhCC
Q 008209 8 LLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQ---GYFYG 84 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~---~~f~~ 84 (574)
..+|+|+|++.| ..+..+.++++|||||+|.-+... ...+...+++.++++||||+....+. ..+.+
T Consensus 703 ~~dIVVgTp~lL----~~~v~~~~L~lLVIDEahrfG~~~------~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d 772 (1147)
T PRK10689 703 KIDILIGTHKLL----QSDVKWKDLGLLIVDEEHRFGVRH------KERIKAMRADVDILTLTATPIPRTLNMAMSGMRD 772 (1147)
T ss_pred CCCEEEECHHHH----hCCCCHhhCCEEEEechhhcchhH------HHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCC
Confidence 368999999754 334457899999999999743321 12222345789999999998654332 23345
Q ss_pred CCeEEeCCe-eeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEE
Q 008209 85 APLMKVPGR-LHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVV 163 (574)
Q Consensus 85 ~~~i~~~gr-~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~ 163 (574)
..++..+.. ..+++.++.......... .++... ..+|+++||+|+.+.++.+++.|.+.. ++..+.
T Consensus 773 ~~~I~~~p~~r~~v~~~~~~~~~~~~k~----~il~el--~r~gqv~vf~n~i~~ie~la~~L~~~~-------p~~~v~ 839 (1147)
T PRK10689 773 LSIIATPPARRLAVKTFVREYDSLVVRE----AILREI--LRGGQVYYLYNDVENIQKAAERLAELV-------PEARIA 839 (1147)
T ss_pred cEEEecCCCCCCCceEEEEecCcHHHHH----HHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhC-------CCCcEE
Confidence 555554432 345655544322111111 222211 247899999999999999999998742 356788
Q ss_pred EcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhh
Q 008209 164 PLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKAS 243 (574)
Q Consensus 164 ~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~ 243 (574)
.+||+|++.+|.+++..|.+|+ .+|+|||+++|+|||||++++||- +++. ..+.++
T Consensus 840 ~lHG~m~q~eRe~im~~Fr~Gk-------~~VLVaTdIierGIDIP~v~~VIi--------~~ad---------~fglaq 895 (1147)
T PRK10689 840 IGHGQMRERELERVMNDFHHQR-------FNVLVCTTIIETGIDIPTANTIII--------ERAD---------HFGLAQ 895 (1147)
T ss_pred EEeCCCCHHHHHHHHHHHHhcC-------CCEEEECchhhcccccccCCEEEE--------ecCC---------CCCHHH
Confidence 9999999999999999999998 999999999999999999999991 1111 112357
Q ss_pred HHHhcccCCCCC-CCeEEeeccc
Q 008209 244 AHQRSGRAGRTQ-PGKCFRLYTE 265 (574)
Q Consensus 244 ~~QR~GRaGR~~-~G~~~rl~t~ 265 (574)
|.||+||+||.+ .|.||.++..
T Consensus 896 ~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 896 LHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred HHHHhhccCCCCCceEEEEEeCC
Confidence 999999999998 4999988764
No 56
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.87 E-value=1e-22 Score=200.90 Aligned_cols=225 Identities=18% Similarity=0.223 Sum_probs=164.4
Q ss_pred cccCCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCC--HHHHHh
Q 008209 5 FCVLLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLE--AEKFQG 80 (574)
Q Consensus 5 ~~~~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~--~~~~~~ 80 (574)
.+.+-+|+++|||+|.++|...- .|.-+.++.+||++ |.+++.|--. +|.+.. .....|.+++||||. .+.|++
T Consensus 299 v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEAD-RmiDmGFEdd-ir~iF~~FK~QRQTLLFSATMP~KIQ~FAk 376 (610)
T KOG0341|consen 299 VRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEAD-RMIDMGFEDD-IRTIFSFFKGQRQTLLFSATMPKKIQNFAK 376 (610)
T ss_pred HhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHH-HHhhccchhh-HHHHHHHHhhhhheeeeeccccHHHHHHHH
Confidence 45678999999999999997655 58999999999999 6776655321 222222 223578999999995 455543
Q ss_pred hhCCCCeEEeCCeeeceeEEeecCCchhHHHHH--HHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCC
Q 008209 81 YFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAA--IRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVG 158 (574)
Q Consensus 81 ~f~~~~~i~~~gr~~~v~~~y~~~~~~~~~~~~--~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~ 158 (574)
-----|+...-||.-.-..... .+-+|+.+- +-.+++.. +....++|||+-.+.+++.+.+.|-- .
T Consensus 377 SALVKPvtvNVGRAGAAsldVi--QevEyVkqEaKiVylLeCL-QKT~PpVLIFaEkK~DVD~IhEYLLl---------K 444 (610)
T KOG0341|consen 377 SALVKPVTVNVGRAGAASLDVI--QEVEYVKQEAKIVYLLECL-QKTSPPVLIFAEKKADVDDIHEYLLL---------K 444 (610)
T ss_pred hhcccceEEecccccccchhHH--HHHHHHHhhhhhhhHHHHh-ccCCCceEEEeccccChHHHHHHHHH---------c
Confidence 2222333333344221110000 011222221 11222222 35688999999999999999999853 5
Q ss_pred CeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeee
Q 008209 159 PVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP 238 (574)
Q Consensus 159 ~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~ 238 (574)
++.++.+||+-.+++|...++.|+.|+ ..|+|||++|..|+|+|+|.+|||+++ |
T Consensus 445 GVEavaIHGGKDQedR~~ai~afr~gk-------KDVLVATDVASKGLDFp~iqHVINyDM------------------P 499 (610)
T KOG0341|consen 445 GVEAVAIHGGKDQEDRHYAIEAFRAGK-------KDVLVATDVASKGLDFPDIQHVINYDM------------------P 499 (610)
T ss_pred cceeEEeecCcchhHHHHHHHHHhcCC-------CceEEEecchhccCCCccchhhccCCC------------------h
Confidence 789999999999999999999999999 899999999999999999999999988 8
Q ss_pred ccHhhHHHhcccCCCCCC-CeEEeecccccc
Q 008209 239 ISKASAHQRSGRAGRTQP-GKCFRLYTEKSF 268 (574)
Q Consensus 239 is~~~~~QR~GRaGR~~~-G~~~rl~t~~~~ 268 (574)
-...+|.||.||+||.|. |..-.+..+...
T Consensus 500 ~eIENYVHRIGRTGRsg~~GiATTfINK~~~ 530 (610)
T KOG0341|consen 500 EEIENYVHRIGRTGRSGKTGIATTFINKNQE 530 (610)
T ss_pred HHHHHHHHHhcccCCCCCcceeeeeecccch
Confidence 899999999999999996 888777665443
No 57
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.87 E-value=2.1e-21 Score=203.68 Aligned_cols=219 Identities=15% Similarity=0.179 Sum_probs=142.8
Q ss_pred CCCeEEEchHHHHHHHhcCC-----C--CCCccEEEEecCCCCCcc-hHHHHHHHHHHHhhCCCccEEEEccCCCHHHHH
Q 008209 8 LLGGRYLTDGMLLREAMTDP-----L--LERYKVIVLDEAHERTLA-TDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQ 79 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-----~--L~~~~~vIiDE~HeR~~~-~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~ 79 (574)
..+|+++|++.++..+..+. . .-..++|||||+|.-.-. .+.++.+++.+. ..+.|+|+||||++ +.+.
T Consensus 94 ~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~--~~~~~~i~~SATlp-~~l~ 170 (358)
T TIGR01587 94 LDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK--DNDVPILLMSATLP-KFLK 170 (358)
T ss_pred hCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH--HcCCCEEEEecCch-HHHH
Confidence 36799999999998877621 0 123489999999964322 233444444332 34789999999996 4556
Q ss_pred hhhCCCCeEE----eCCeeec-e-eEEe--ecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHh
Q 008209 80 GYFYGAPLMK----VPGRLHP-V-EIFY--TQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEIT 151 (574)
Q Consensus 80 ~~f~~~~~i~----~~gr~~~-v-~~~y--~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~ 151 (574)
+|+....... .+..... . ...+ ........ ...+..++... ..++++|||++++++++.+++.|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~~--~~~~~~lVf~~t~~~~~~~~~~L~~~~- 246 (358)
T TIGR01587 171 EYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGE-ISSLERLLEFI--KKGGKIAIIVNTVDRAQEFYQQLKENA- 246 (358)
T ss_pred HHHhcCCCcccccCCCCccccccccccceeeccccccC-HHHHHHHHHHh--hCCCeEEEEECCHHHHHHHHHHHHhhc-
Confidence 6654321111 1111000 0 0011 11110111 11222233222 357899999999999999999998632
Q ss_pred hcCCCCCCeEEEEcCCCCCHHHHhh----hcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecC
Q 008209 152 NMGDQVGPVKVVPLYSTLPPAMQQK----IFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNP 227 (574)
Q Consensus 152 ~~~~~~~~~~v~~lhs~l~~~~q~~----v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~ 227 (574)
....+..+||++++.+|.+ +++.+++|. .+|+|||+++|+||||| +.+||..
T Consensus 247 ------~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~-------~~ilvaT~~~~~GiDi~-~~~vi~~---------- 302 (358)
T TIGR01587 247 ------PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNE-------KFVIVATQVIEASLDIS-ADVMITE---------- 302 (358)
T ss_pred ------CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCC-------CeEEEECcchhceeccC-CCEEEEc----------
Confidence 2346999999999999876 478888877 89999999999999997 6666632
Q ss_pred CCCcceeeeeeccHhhHHHhcccCCCCCC-----CeEEeeccccc
Q 008209 228 RVRVESLLVSPISKASAHQRSGRAGRTQP-----GKCFRLYTEKS 267 (574)
Q Consensus 228 ~~~~~~l~~~~is~~~~~QR~GRaGR~~~-----G~~~rl~t~~~ 267 (574)
+.+.++|.||+||+||.|. |.+|.++....
T Consensus 303 ----------~~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 303 ----------LAPIDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred ----------CCCHHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 3456799999999999873 36677765443
No 58
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.86 E-value=5.3e-21 Score=215.15 Aligned_cols=211 Identities=16% Similarity=0.220 Sum_probs=147.8
Q ss_pred CCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHH-hhhCCCC
Q 008209 8 LLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQ-GYFYGAP 86 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~-~~f~~~~ 86 (574)
..+|+|+|++.+.. .-.+.++++|||||+|.-+... -..+.....+.++++||||+....++ .++++..
T Consensus 364 ~~~IvVgT~~ll~~----~v~~~~l~lvVIDE~Hrfg~~q------r~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~ 433 (681)
T PRK10917 364 EADIVIGTHALIQD----DVEFHNLGLVIIDEQHRFGVEQ------RLALREKGENPHVLVMTATPIPRTLAMTAYGDLD 433 (681)
T ss_pred CCCEEEchHHHhcc----cchhcccceEEEechhhhhHHH------HHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCc
Confidence 37899999987632 2358899999999999633221 11122233468899999998665544 2334333
Q ss_pred eEEe---CCeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHH--------HHHHHHHHHHHHHhhcCC
Q 008209 87 LMKV---PGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEE--------EIEDACRKITKEITNMGD 155 (574)
Q Consensus 87 ~i~~---~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~--------ei~~~~~~L~~~~~~~~~ 155 (574)
+..+ +....|+...+......+ ..+..+.... ..+++++||||..+ .++.+++.|.+.+
T Consensus 434 ~s~i~~~p~~r~~i~~~~~~~~~~~---~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~----- 503 (681)
T PRK10917 434 VSVIDELPPGRKPITTVVIPDSRRD---EVYERIREEI--AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAF----- 503 (681)
T ss_pred eEEEecCCCCCCCcEEEEeCcccHH---HHHHHHHHHH--HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHC-----
Confidence 3222 222346766665543332 2233333332 35789999999654 3445566665421
Q ss_pred CCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceee
Q 008209 156 QVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLL 235 (574)
Q Consensus 156 ~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~ 235 (574)
+.+.+..+||+|++++|..+++.|.+|. .+|+|||+++|+|||+|++++||..+. ..
T Consensus 504 --~~~~v~~lHG~m~~~eR~~i~~~F~~g~-------~~ILVaT~vie~GiDip~v~~VIi~~~--------~r------ 560 (681)
T PRK10917 504 --PELRVGLLHGRMKPAEKDAVMAAFKAGE-------IDILVATTVIEVGVDVPNATVMVIENA--------ER------ 560 (681)
T ss_pred --CCCcEEEEeCCCCHHHHHHHHHHHHcCC-------CCEEEECcceeeCcccCCCcEEEEeCC--------CC------
Confidence 3478999999999999999999999998 999999999999999999999995443 21
Q ss_pred eeeccHhhHHHhcccCCCCC-CCeEEeecc
Q 008209 236 VSPISKASAHQRSGRAGRTQ-PGKCFRLYT 264 (574)
Q Consensus 236 ~~~is~~~~~QR~GRaGR~~-~G~~~rl~t 264 (574)
.+.+++.||+||+||.+ +|.||.+++
T Consensus 561 ---~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 561 ---FGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred ---CCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 23578999999999998 699999986
No 59
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.86 E-value=1.7e-20 Score=195.86 Aligned_cols=204 Identities=16% Similarity=0.188 Sum_probs=136.6
Q ss_pred CCCeEEEchHHHHHHHh---cCC------CCCCccEEEEecCCCCCcchH-HHH---HHHHHHHhhCCCccEEEEccCCC
Q 008209 8 LLGGRYLTDGMLLREAM---TDP------LLERYKVIVLDEAHERTLATD-VLF---GLLKEVLKNRPDLKLVVMSATLE 74 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~---~~~------~L~~~~~vIiDE~HeR~~~~d-~ll---~~lk~~~~~~~~~klvlmSATl~ 74 (574)
.++|+++||.+|...+. .++ .+.++++||+||+|..+.... .++ ...+.+.......|+|+||||++
T Consensus 113 ~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~ 192 (357)
T TIGR03158 113 TPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPD 192 (357)
T ss_pred CCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCC
Confidence 35667777777754432 233 368999999999998775432 222 22222222233589999999997
Q ss_pred HH---HHHhh-hCCCCeEEeCCe--ee--------------------ceeEEeecCCc--hhHHHHHHHHHHHHHhcCCC
Q 008209 75 AE---KFQGY-FYGAPLMKVPGR--LH--------------------PVEIFYTQEPE--RDYLEAAIRTVVQIHMCEPS 126 (574)
Q Consensus 75 ~~---~~~~~-f~~~~~i~~~gr--~~--------------------~v~~~y~~~~~--~~~~~~~~~~~~~i~~~~~~ 126 (574)
.. .+.+. +.+.+++.++|+ .+ ++++.+..... .+.+......+.+.....++
T Consensus 193 ~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~ 272 (357)
T TIGR03158 193 PALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPG 272 (357)
T ss_pred HHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCC
Confidence 54 33332 124677777777 11 35555544221 12222333344444433467
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccc
Q 008209 127 GDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSL 206 (574)
Q Consensus 127 g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gi 206 (574)
+++|||++|+++++.+++.|++. ..+..+..+||.+++.+|.++. . ..|+|||+++|+||
T Consensus 273 ~k~LIf~nt~~~~~~l~~~L~~~-------~~~~~~~~l~g~~~~~~R~~~~------~-------~~iLVaTdv~~rGi 332 (357)
T TIGR03158 273 ERGAIILDSLDEVNRLSDLLQQQ-------GLGDDIGRITGFAPKKDRERAM------Q-------FDILLGTSTVDVGV 332 (357)
T ss_pred CeEEEEECCHHHHHHHHHHHhhh-------CCCceEEeeecCCCHHHHHHhc------c-------CCEEEEecHHhccc
Confidence 89999999999999999999762 1245788999999999987654 2 68999999999999
Q ss_pred cCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCC
Q 008209 207 TIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAG 252 (574)
Q Consensus 207 tip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaG 252 (574)
|||++ +|| + .|.+.++|+||+||+|
T Consensus 333 Di~~~-~vi-~-------------------~p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 333 DFKRD-WLI-F-------------------SARDAAAFWQRLGRLG 357 (357)
T ss_pred CCCCc-eEE-E-------------------CCCCHHHHhhhcccCC
Confidence 99987 455 1 1567889999999998
No 60
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.86 E-value=3.5e-21 Score=212.72 Aligned_cols=352 Identities=20% Similarity=0.218 Sum_probs=234.0
Q ss_pred CCCeEEEchHH---HHHHHhcCCCCCCccEEEEecCC----CCCcchHHHHHHHHHHHh-hCCCccEEEEccCC-CHHHH
Q 008209 8 LLGGRYLTDGM---LLREAMTDPLLERYKVIVLDEAH----ERTLATDVLFGLLKEVLK-NRPDLKLVVMSATL-EAEKF 78 (574)
Q Consensus 8 ~~~I~~~T~g~---Ll~~l~~~~~L~~~~~vIiDE~H----eR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl-~~~~~ 78 (574)
+|+|+++||.- +.|.--.+...+-|+.+||||+| .||.-.+.+.+...+-.. .....|+|++|||+ |.+..
T Consensus 411 eTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV 490 (1674)
T KOG0951|consen 411 ETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDV 490 (1674)
T ss_pred cceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhh
Confidence 58999999973 33332222346689999999998 799999988887655443 55689999999999 67888
Q ss_pred HhhhCCCC--eEEe--CCeeeceeEEeecCCchhHH-------HHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHH
Q 008209 79 QGYFYGAP--LMKV--PGRLHPVEIFYTQEPERDYL-------EAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKIT 147 (574)
Q Consensus 79 ~~~f~~~~--~i~~--~gr~~~v~~~y~~~~~~~~~-------~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~ 147 (574)
+.|+...+ ++.. .-|+.|++..|......+-+ +.+.+.+++ ....++||||+.+++|.-+.++.++
T Consensus 491 ~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~---~agk~qVLVFVHsRkET~ktA~aIR 567 (1674)
T KOG0951|consen 491 ASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLE---HAGKNQVLVFVHSRKETAKTARAIR 567 (1674)
T ss_pred HHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHH---hCCCCcEEEEEEechHHHHHHHHHH
Confidence 87775332 2333 45677777777755433222 223334433 2456999999999999999999998
Q ss_pred HHHhh-----------------c--------C---CCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEec
Q 008209 148 KEITN-----------------M--------G---DQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVST 199 (574)
Q Consensus 148 ~~~~~-----------------~--------~---~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT 199 (574)
+...+ + . .+..+..+..+|+||...+|..+.+-|..|. ++|+++|
T Consensus 568 d~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~-------iqvlvst 640 (1674)
T KOG0951|consen 568 DKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGH-------IQVLVST 640 (1674)
T ss_pred HHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCc-------eeEEEee
Confidence 53211 0 0 0123466888999999999999999999998 9999999
Q ss_pred ccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC-----CCeEEeeccccccccc-cC
Q 008209 200 NIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ-----PGKCFRLYTEKSFNND-LQ 273 (574)
Q Consensus 200 ~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~-----~G~~~rl~t~~~~~~~-l~ 273 (574)
.++++||+.|+-+++| ....+|||..|. ..++|+-+.+||.|||||.+ .|+...=+++-.|... |.
T Consensus 641 atlawgvnlpahtVii----kgtqvy~pekg~----w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn 712 (1674)
T KOG0951|consen 641 ATLAWGVNLPAHTVII----KGTQVYDPEKGR----WTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMN 712 (1674)
T ss_pred hhhhhhcCCCcceEEe----cCccccCcccCc----cccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhh
Confidence 9999999999999999 788999999985 66799999999999999998 3444443444333211 11
Q ss_pred -CCCcchhccCCchhhHHHHhhcCCCCcccc-CC-----------------------CCCCc----HHHHHHHHHHHHHc
Q 008209 274 -PQTYPEILRSNLANTVLTLKKLGIDDLVHF-DF-----------------------MDPPA----PETLMRALEVLNYL 324 (574)
Q Consensus 274 -~~~~pei~~~~l~~~~L~l~~~~~~~~~~~-~~-----------------------l~~P~----~~~l~~al~~L~~l 324 (574)
..++++-.-..|.+.+-.=+.+|+....+- +| .|++. .+.+..|.-.|...
T Consensus 713 ~qLpiesq~~~rl~d~lnaeiv~Gv~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~lvhsa~~ll~~~ 792 (1674)
T KOG0951|consen 713 QQLPIESQFVSRLADCLNAEIVLGVRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRADLVHSAATLLDKA 792 (1674)
T ss_pred hcCCChHHHHHHhhhhhhhhhhcchhhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHHHHHhhhHHHHHhhHhhc
Confidence 112233333333332222223333222110 11 12221 24567888899999
Q ss_pred CCccCC---C--CcChhhhhhccCCCCHHHHHHHHhccCCCCchhhHhHHhhccCCCccc
Q 008209 325 GALDDD---G--NLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFV 379 (574)
Q Consensus 325 gald~~---~--~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~~~~~~i~a~ls~~~~f~ 379 (574)
|.|--+ | +.|++|++.+.+++.-......-......|.+. .+..+.+-.+.|-
T Consensus 793 ~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i--~lfrifs~seEfk 850 (1674)
T KOG0951|consen 793 GLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSEI--DLFRIFSKSEEFK 850 (1674)
T ss_pred CccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhccc--hhhhhhhhccccc
Confidence 988432 2 589999999999997666555544444344332 3444455444444
No 61
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.86 E-value=3.8e-21 Score=212.82 Aligned_cols=276 Identities=19% Similarity=0.208 Sum_probs=201.5
Q ss_pred CCCeEEEchHHHHHHHhcCC---CCCCccEEEEecCC-----CCCcchHHHHHHHHHHHhhCCCccEEEEccCC-CHHHH
Q 008209 8 LLGGRYLTDGMLLREAMTDP---LLERYKVIVLDEAH-----ERTLATDVLFGLLKEVLKNRPDLKLVVMSATL-EAEKF 78 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~---~L~~~~~vIiDE~H-----eR~~~~d~ll~~lk~~~~~~~~~klvlmSATl-~~~~~ 78 (574)
.+||+++||+-|.-.|.+.. .|.++.+|||||+| +||...-+.|..|+.+.. ++|.|++|||+ +.+..
T Consensus 123 PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~---~~qRIGLSATV~~~~~v 199 (814)
T COG1201 123 PPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAG---DFQRIGLSATVGPPEEV 199 (814)
T ss_pred CCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhCc---ccEEEeehhccCCHHHH
Confidence 48999999999977776543 69999999999999 799888888888877643 89999999999 79999
Q ss_pred HhhhCCC----CeEEeCC-eeeceeEEeecCCc---hhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHH
Q 008209 79 QGYFYGA----PLMKVPG-RLHPVEIFYTQEPE---RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEI 150 (574)
Q Consensus 79 ~~~f~~~----~~i~~~g-r~~~v~~~y~~~~~---~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~ 150 (574)
++|+.+. .++.+++ +...+++....... .......+..+..+.+ ....+|||+||+..++.++..|.+.
T Consensus 200 arfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~--~~~ttLIF~NTR~~aE~l~~~L~~~- 276 (814)
T COG1201 200 AKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVK--KHRTTLIFTNTRSGAERLAFRLKKL- 276 (814)
T ss_pred HHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHh--hcCcEEEEEeChHHHHHHHHHHHHh-
Confidence 9999643 4565554 44445555433221 1123345555666554 3559999999999999999999873
Q ss_pred hhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCC
Q 008209 151 TNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVR 230 (574)
Q Consensus 151 ~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~ 230 (574)
....+..+||+++.++|..+.+.+++|. .|++|||+.+|-||||.+|+.||..|=
T Consensus 277 -------~~~~i~~HHgSlSre~R~~vE~~lk~G~-------lravV~TSSLELGIDiG~vdlVIq~~S----------- 331 (814)
T COG1201 277 -------GPDIIEVHHGSLSRELRLEVEERLKEGE-------LKAVVATSSLELGIDIGDIDLVIQLGS----------- 331 (814)
T ss_pred -------cCCceeeecccccHHHHHHHHHHHhcCC-------ceEEEEccchhhccccCCceEEEEeCC-----------
Confidence 3367899999999999999999999998 999999999999999999999997664
Q ss_pred cceeeeeeccHhhHHHhcccCCCCC----CCeEEeeccccccccc--------cCCCCcchhccCCchhhHHHHhhcCCC
Q 008209 231 VESLLVSPISKASAHQRSGRAGRTQ----PGKCFRLYTEKSFNND--------LQPQTYPEILRSNLANTVLTLKKLGID 298 (574)
Q Consensus 231 ~~~l~~~~is~~~~~QR~GRaGR~~----~G~~~rl~t~~~~~~~--------l~~~~~pei~~~~l~~~~L~l~~~~~~ 298 (574)
|-|.+...||.||+|+.- .|..|...-.+-. ++ -.....++|-..+|+-+.-++.++-+.
T Consensus 332 -------P~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dll-E~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~ 403 (814)
T COG1201 332 -------PKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLL-ECLVLADLALEGKLERIKIPKNPLDVLAQQIVGMALE 403 (814)
T ss_pred -------cHHHHHHhHhccccccccCCcccEEEEecCHHHHH-HHHHHHHHHHhCCcccCCCCCcchhHHHHHHHHHHhh
Confidence 899999999999999865 3555444321111 11 112234666667776655555443322
Q ss_pred Ccc-----------ccCCCCCCcHHHHHHHHHHHHH
Q 008209 299 DLV-----------HFDFMDPPAPETLMRALEVLNY 323 (574)
Q Consensus 299 ~~~-----------~~~~l~~P~~~~l~~al~~L~~ 323 (574)
... .+||-+ -+.+.+...++.|..
T Consensus 404 ~~~~~~~~y~~vrraypy~~-L~~e~f~~v~~~l~~ 438 (814)
T COG1201 404 KVWEVEEAYRVVRRAYPYAD-LSREDFRLVLRYLAG 438 (814)
T ss_pred CcCCHHHHHHHHHhcccccc-CCHHHHHHHHHHHhh
Confidence 110 013333 245668888888887
No 62
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.85 E-value=8.1e-21 Score=212.22 Aligned_cols=213 Identities=16% Similarity=0.213 Sum_probs=146.2
Q ss_pred CCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHh-hhCCCC-
Q 008209 9 LGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQG-YFYGAP- 86 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~-~f~~~~- 86 (574)
.+|+|+|++.+.+ +..+.++++|||||+|..+.... ..+........+.++++||||+....+.. .+++..
T Consensus 339 ~~IiVgT~~ll~~----~~~~~~l~lvVIDEaH~fg~~qr---~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~ 411 (630)
T TIGR00643 339 IHLVVGTHALIQE----KVEFKRLALVIIDEQHRFGVEQR---KKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDT 411 (630)
T ss_pred CCEEEecHHHHhc----cccccccceEEEechhhccHHHH---HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcce
Confidence 5899999997643 34578999999999996443321 11111111112678999999986554432 223222
Q ss_pred -eE-EeCCeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHH--------HHHHHHHHHHHHHhhcCCC
Q 008209 87 -LM-KVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEE--------EIEDACRKITKEITNMGDQ 156 (574)
Q Consensus 87 -~i-~~~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~--------ei~~~~~~L~~~~~~~~~~ 156 (574)
++ ..+....|+..++...... ...+..+.... ..+++++||+|..+ .++.+++.|.+.
T Consensus 412 ~~i~~~p~~r~~i~~~~~~~~~~---~~~~~~i~~~l--~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~------- 479 (630)
T TIGR00643 412 SIIDELPPGRKPITTVLIKHDEK---DIVYEFIEEEI--AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKA------- 479 (630)
T ss_pred eeeccCCCCCCceEEEEeCcchH---HHHHHHHHHHH--HhCCcEEEEEccccccccchHHHHHHHHHHHHhh-------
Confidence 22 2233335676666554322 22333333222 35789999999864 344555555542
Q ss_pred CCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeee
Q 008209 157 VGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLV 236 (574)
Q Consensus 157 ~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~ 236 (574)
.++..+..+||+|++++|..+++.|.+|. .+|+|||+++|+|||+|++++||..+ +..
T Consensus 480 ~~~~~v~~lHG~m~~~eR~~i~~~F~~g~-------~~ILVaT~vie~GvDiP~v~~VIi~~--------~~r------- 537 (630)
T TIGR00643 480 FPKYNVGLLHGRMKSDEKEAVMEEFREGE-------VDILVATTVIEVGVDVPNATVMVIED--------AER------- 537 (630)
T ss_pred CCCCcEEEEeCCCCHHHHHHHHHHHHcCC-------CCEEEECceeecCcccCCCcEEEEeC--------CCc-------
Confidence 24678999999999999999999999998 99999999999999999999999543 321
Q ss_pred eeccHhhHHHhcccCCCCC-CCeEEeecc
Q 008209 237 SPISKASAHQRSGRAGRTQ-PGKCFRLYT 264 (574)
Q Consensus 237 ~~is~~~~~QR~GRaGR~~-~G~~~rl~t 264 (574)
.+.+++.||+|||||.+ +|.||.++.
T Consensus 538 --~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 538 --FGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred --CCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 24578999999999988 699999984
No 63
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.84 E-value=7.1e-22 Score=202.84 Aligned_cols=221 Identities=22% Similarity=0.258 Sum_probs=153.7
Q ss_pred CCCeEEEchHHHHHHHhcCC----CCCCccEEEEecCCCCCcch---HHHHHHHHHHHh--hCCCccEEEEccCCCHHHH
Q 008209 8 LLGGRYLTDGMLLREAMTDP----LLERYKVIVLDEAHERTLAT---DVLFGLLKEVLK--NRPDLKLVVMSATLEAEKF 78 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~----~L~~~~~vIiDE~HeR~~~~---d~ll~~lk~~~~--~~~~~klvlmSATl~~~~~ 78 (574)
..+|+|+|||+|...+..+. .+.+++++|+||++ |.+.- +-+-.+|+.+.. ..+..|.+++|||++....
T Consensus 313 ~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaD-RmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~ 391 (731)
T KOG0347|consen 313 RPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEAD-RMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQ 391 (731)
T ss_pred CCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHH-HHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhc
Confidence 57999999999999997765 47899999999999 44432 222334444432 3456799999999854322
Q ss_pred HhhhC-----------CCC------eEEeCCeeeceeEEeecCCchhHHHHHHHHHHHH-----------HhcCCCCCEE
Q 008209 79 QGYFY-----------GAP------LMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQI-----------HMCEPSGDIL 130 (574)
Q Consensus 79 ~~~f~-----------~~~------~i~~~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i-----------~~~~~~g~iL 130 (574)
...-. +++ .+.+.|. |.-+-- .++........+..+.. ....-+|..|
T Consensus 392 ~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~k--pkiiD~--t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTl 467 (731)
T KOG0347|consen 392 QPLSSSRKKKDKEDELNAKIQHLMKKIGFRGK--PKIIDL--TPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTL 467 (731)
T ss_pred ChhHHhhhccchhhhhhHHHHHHHHHhCccCC--CeeEec--CcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceE
Confidence 21100 000 0111111 100000 01111111111111110 0123479999
Q ss_pred EEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCC
Q 008209 131 VFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDG 210 (574)
Q Consensus 131 VFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~ 210 (574)
||||+.+.|.+++..|.. .++.-++||+.|.+.+|.+-++.|+... .-|+|||++|++|+|||+
T Consensus 468 VF~NsId~vKRLt~~L~~---------L~i~p~~LHA~M~QKqRLknLEkF~~~~-------~~VLiaTDVAARGLDIp~ 531 (731)
T KOG0347|consen 468 VFCNSIDCVKRLTVLLNN---------LDIPPLPLHASMIQKQRLKNLEKFKQSP-------SGVLIATDVAARGLDIPG 531 (731)
T ss_pred EEechHHHHHHHHHHHhh---------cCCCCchhhHHHHHHHHHHhHHHHhcCC-------CeEEEeehhhhccCCCCC
Confidence 999999999999999975 5677899999999999999999998877 789999999999999999
Q ss_pred eEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCC-CeEEeeccccc
Q 008209 211 IVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQP-GKCFRLYTEKS 267 (574)
Q Consensus 211 v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~-G~~~rl~t~~~ 267 (574)
|.+||++-. |-+..-|+||.||+.|.+. |...-|....+
T Consensus 532 V~HVIHYqV------------------PrtseiYVHRSGRTARA~~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 532 VQHVIHYQV------------------PRTSEIYVHRSGRTARANSEGVSVMLCGPQE 571 (731)
T ss_pred cceEEEeec------------------CCccceeEecccccccccCCCeEEEEeChHH
Confidence 999998766 8888899999999999985 99888876544
No 64
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.84 E-value=8.4e-20 Score=187.52 Aligned_cols=228 Identities=21% Similarity=0.265 Sum_probs=160.5
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCC--CHHHHHhhhCC
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL--EAEKFQGYFYG 84 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl--~~~~~~~~f~~ 84 (574)
..+|.|+||-++.+-|.... .+.+++++|+|||| |..-.-.-.-+.+..++...+.++++||||. +.+.+.+-..+
T Consensus 107 ~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH-RAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs~~ekI~eV~~n 185 (542)
T COG1111 107 KKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH-RAVGNYAYVFVAKEYLRSAKNPLILGLTASPGSDLEKIQEVVEN 185 (542)
T ss_pred hCCEEEeccHHHHhHHhcCccChHHceEEEechhh-hccCcchHHHHHHHHHHhccCceEEEEecCCCCCHHHHHHHHHh
Confidence 47899999999999998876 59999999999999 5555445555566677777889999999998 66777665543
Q ss_pred CCe--EEe--CC----ee--eceeEEeecCC------------------------------------chhHHHHH-----
Q 008209 85 APL--MKV--PG----RL--HPVEIFYTQEP------------------------------------ERDYLEAA----- 113 (574)
Q Consensus 85 ~~~--i~~--~g----r~--~~v~~~y~~~~------------------------------------~~~~~~~~----- 113 (574)
-.+ +.+ +. ++ ..+++.+.+.. ..+.+...
T Consensus 186 LgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~ 265 (542)
T COG1111 186 LGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLI 265 (542)
T ss_pred CCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHH
Confidence 211 111 11 11 12333332210 00000000
Q ss_pred -------------------H------------------------------------------------------------
Q 008209 114 -------------------I------------------------------------------------------------ 114 (574)
Q Consensus 114 -------------------~------------------------------------------------------------ 114 (574)
+
T Consensus 266 ~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v 345 (542)
T COG1111 266 MAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGV 345 (542)
T ss_pred hccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccC
Confidence 0
Q ss_pred -----HHHHH----HHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEE-----EcCCCCCHHHHhhhcCC
Q 008209 115 -----RTVVQ----IHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVV-----PLYSTLPPAMQQKIFEP 180 (574)
Q Consensus 115 -----~~~~~----i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~-----~lhs~l~~~~q~~v~~~ 180 (574)
..+.. .....++..|+||..-++.++.+.+.|.+.. .... ..++ ..-.||++.+|..+++.
T Consensus 346 ~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~----~~~~-~rFiGQa~r~~~~GMsQkeQ~eiI~~ 420 (542)
T COG1111 346 EHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIG----IKAR-VRFIGQASREGDKGMSQKEQKEIIDQ 420 (542)
T ss_pred CCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcC----Ccce-eEEeeccccccccccCHHHHHHHHHH
Confidence 00001 1111345689999999999999999998632 1111 1122 12368999999999999
Q ss_pred CCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEE
Q 008209 181 APPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCF 260 (574)
Q Consensus 181 ~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~ 260 (574)
|+.|. .+|+|||+|+|-|+|||++++|| .|+| -.|.--++||.||+||..+|..|
T Consensus 421 Fr~Ge-------~nVLVaTSVgEEGLDIp~vDlVi--------fYEp----------vpSeIR~IQR~GRTGR~r~Grv~ 475 (542)
T COG1111 421 FRKGE-------YNVLVATSVGEEGLDIPEVDLVI--------FYEP----------VPSEIRSIQRKGRTGRKRKGRVV 475 (542)
T ss_pred HhcCC-------ceEEEEcccccccCCCCcccEEE--------EecC----------CcHHHHHHHhhCccccCCCCeEE
Confidence 99999 99999999999999999999999 5765 34677899999999999999999
Q ss_pred eecccc
Q 008209 261 RLYTEK 266 (574)
Q Consensus 261 rl~t~~ 266 (574)
.|.++.
T Consensus 476 vLvt~g 481 (542)
T COG1111 476 VLVTEG 481 (542)
T ss_pred EEEecC
Confidence 999987
No 65
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.83 E-value=5.7e-20 Score=184.56 Aligned_cols=219 Identities=21% Similarity=0.245 Sum_probs=170.9
Q ss_pred CCCeEEEchHHHHHHHhcCC--CCCCccEEEEecCC---CCCcchHHHHHHHHHHHh-hCCCccEEEEccCC--CHHHHH
Q 008209 8 LLGGRYLTDGMLLREAMTDP--LLERYKVIVLDEAH---ERTLATDVLFGLLKEVLK-NRPDLKLVVMSATL--EAEKFQ 79 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~--~L~~~~~vIiDE~H---eR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl--~~~~~~ 79 (574)
.++|+|+|||.|++++..++ .+..++++|+|||+ ..|..-| ++.+.. ..+..|-++||||+ |+..+.
T Consensus 145 ~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeed-----lk~l~~~LPr~~Q~~LmSATl~dDv~~LK 219 (569)
T KOG0346|consen 145 LPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEED-----LKKLRSHLPRIYQCFLMSATLSDDVQALK 219 (569)
T ss_pred CCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHH-----HHHHHHhCCchhhheeehhhhhhHHHHHH
Confidence 58999999999999999988 48999999999998 2222222 333333 55678999999999 688999
Q ss_pred hhhCCCCeE-EeCCeee----ceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcC
Q 008209 80 GYFYGAPLM-KVPGRLH----PVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMG 154 (574)
Q Consensus 80 ~~f~~~~~i-~~~gr~~----~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~ 154 (574)
..|-..|++ ......- .+..++....+.|.+-.. -.++.+. --.|++|+|+|+.+.+-++.-.|++
T Consensus 220 kL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflll-yallKL~--LI~gKsliFVNtIdr~YrLkLfLeq------ 290 (569)
T KOG0346|consen 220 KLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLL-YALLKLR--LIRGKSLIFVNTIDRCYRLKLFLEQ------ 290 (569)
T ss_pred HHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHH-HHHHHHH--HhcCceEEEEechhhhHHHHHHHHH------
Confidence 988777765 3333222 256677766665554322 1222221 2379999999999999988888876
Q ss_pred CCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc----------------------------------
Q 008209 155 DQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN---------------------------------- 200 (574)
Q Consensus 155 ~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~---------------------------------- 200 (574)
-++.-+.|.|.||.+-|.-+++.|..|. ..|||||+
T Consensus 291 ---FGiksciLNseLP~NSR~Hii~QFNkG~-------YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E 360 (569)
T KOG0346|consen 291 ---FGIKSCILNSELPANSRCHIIEQFNKGL-------YDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKE 360 (569)
T ss_pred ---hCcHhhhhcccccccchhhHHHHhhCcc-------eeEEEEccCccchhhhhccccccccccCCCCccccccccCch
Confidence 5677889999999999999999999998 99999999
Q ss_pred -cccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC-CCeEEeecccccc
Q 008209 201 -IAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ-PGKCFRLYTEKSF 268 (574)
Q Consensus 201 -iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~-~G~~~rl~t~~~~ 268 (574)
=..+|||+..|..|||+++ |-+..+|+||+||++|.+ +|.+..+....+.
T Consensus 361 ~GVsRGIDF~~V~~VlNFD~------------------P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~ 412 (569)
T KOG0346|consen 361 SGVSRGIDFHHVSNVLNFDF------------------PETVTSYIHRVGRTARGNNKGTALSFVSPKEE 412 (569)
T ss_pred hchhccccchheeeeeecCC------------------CCchHHHHHhccccccCCCCCceEEEecchHH
Confidence 1347899999999999999 999999999999999998 5999888766443
No 66
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.83 E-value=5.6e-20 Score=191.70 Aligned_cols=224 Identities=15% Similarity=0.217 Sum_probs=181.0
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCC---HHHHHhhh
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLE---AEKFQGYF 82 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~---~~~~~~~f 82 (574)
.++|+++|||++++....+- ..++++++|+||++. -+++..+-.-+..++. .....|++.+|||-+ .+.+++|+
T Consensus 143 ~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADk-L~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~m 221 (980)
T KOG4284|consen 143 QTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADK-LMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFM 221 (980)
T ss_pred hceEEecCchHHHHHHHhcCCCccceeEEEeccHHh-hhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHh
Confidence 47899999999999887665 489999999999994 4455555555555555 444678999999985 57888999
Q ss_pred CCCCeEEeCCe---eeceeEEeecCCch----hHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCC
Q 008209 83 YGAPLMKVPGR---LHPVEIFYTQEPER----DYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGD 155 (574)
Q Consensus 83 ~~~~~i~~~gr---~~~v~~~y~~~~~~----~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~ 155 (574)
.++.++....+ .+-++.+|...+.. ..+...+..+-++...-+-.+.|||++....++-++..|..
T Consensus 222 rdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~s------- 294 (980)
T KOG4284|consen 222 RDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKS------- 294 (980)
T ss_pred cccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhc-------
Confidence 88888877654 34456666544433 22334455666777777888999999999999999999975
Q ss_pred CCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceee
Q 008209 156 QVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLL 235 (574)
Q Consensus 156 ~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~ 235 (574)
.++.+..+.|.|++.+|..+++..+.-. .+|+|||+.-++|||-|+|..|||.+-
T Consensus 295 --sG~d~~~ISgaM~Q~~Rl~a~~~lr~f~-------~rILVsTDLtaRGIDa~~vNLVVNiD~---------------- 349 (980)
T KOG4284|consen 295 --SGLDVTFISGAMSQKDRLLAVDQLRAFR-------VRILVSTDLTARGIDADNVNLVVNIDA---------------- 349 (980)
T ss_pred --cCCCeEEeccccchhHHHHHHHHhhhce-------EEEEEecchhhccCCccccceEEecCC----------------
Confidence 6788999999999999999999988877 999999999999999999999998775
Q ss_pred eeeccHhhHHHhcccCCCCCC-CeEEeecccc
Q 008209 236 VSPISKASAHQRSGRAGRTQP-GKCFRLYTEK 266 (574)
Q Consensus 236 ~~~is~~~~~QR~GRaGR~~~-G~~~rl~t~~ 266 (574)
|.....|.||.|||||-|. |..+.+.-.+
T Consensus 350 --p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~ 379 (980)
T KOG4284|consen 350 --PADEETYFHRIGRAGRFGAHGAAVTLLEDE 379 (980)
T ss_pred --CcchHHHHHHhhhcccccccceeEEEeccc
Confidence 8899999999999999996 9888876543
No 67
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.83 E-value=6.3e-20 Score=196.43 Aligned_cols=223 Identities=15% Similarity=0.181 Sum_probs=160.3
Q ss_pred CCeEEEchHHHHHHHhcCC-CCCCccEEEEecCC---CCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHH---HHHhh
Q 008209 9 LGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAH---ERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAE---KFQGY 81 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~H---eR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~---~~~~~ 81 (574)
-+++|.+|.+|...-..+- .-.+++.++||||| +.|.+----+..+..+....|++.++.++||.+.. .+.+-
T Consensus 108 ~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~ 187 (590)
T COG0514 108 LKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQ 187 (590)
T ss_pred eeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHH
Confidence 4789999998754321111 14578999999999 44433333344455555566799999999999743 33333
Q ss_pred hC-CCCeEEeCCeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCe
Q 008209 82 FY-GAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPV 160 (574)
Q Consensus 82 f~-~~~~i~~~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~ 160 (574)
++ +.+.+.+.+-..| .++|.-.+..+...... .+.. ......+.-||||.|+.+++.+++.|.+ .++
T Consensus 188 L~l~~~~~~~~sfdRp-Ni~~~v~~~~~~~~q~~-fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~---------~g~ 255 (590)
T COG0514 188 LGLQDANIFRGSFDRP-NLALKVVEKGEPSDQLA-FLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRK---------NGI 255 (590)
T ss_pred hcCCCcceEEecCCCc-hhhhhhhhcccHHHHHH-HHHh-hccccCCCeEEEEeeHHhHHHHHHHHHH---------CCC
Confidence 32 3322222221111 12222111111111111 2222 1234577899999999999999999987 478
Q ss_pred EEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeecc
Q 008209 161 KVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPIS 240 (574)
Q Consensus 161 ~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is 240 (574)
.+.++|++|+.++|..+.+.|..+. .+|||||+....|||.|||++||++++ |-|
T Consensus 256 ~a~~YHaGl~~~eR~~~q~~f~~~~-------~~iiVAT~AFGMGIdKpdVRfViH~~l------------------P~s 310 (590)
T COG0514 256 SAGAYHAGLSNEERERVQQAFLNDE-------IKVMVATNAFGMGIDKPDVRFVIHYDL------------------PGS 310 (590)
T ss_pred ceEEecCCCCHHHHHHHHHHHhcCC-------CcEEEEeccccCccCCCCceEEEEecC------------------CCC
Confidence 9999999999999999999999888 999999999999999999999999998 999
Q ss_pred HhhHHHhcccCCCCC-CCeEEeecccccc
Q 008209 241 KASAHQRSGRAGRTQ-PGKCFRLYTEKSF 268 (574)
Q Consensus 241 ~~~~~QR~GRaGR~~-~G~~~rl~t~~~~ 268 (574)
.++|.|-+|||||-| |..|+.||+..+.
T Consensus 311 ~EsYyQE~GRAGRDG~~a~aill~~~~D~ 339 (590)
T COG0514 311 IESYYQETGRAGRDGLPAEAILLYSPEDI 339 (590)
T ss_pred HHHHHHHHhhccCCCCcceEEEeeccccH
Confidence 999999999999999 6999999998775
No 68
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=2.7e-20 Score=189.55 Aligned_cols=225 Identities=19% Similarity=0.253 Sum_probs=161.6
Q ss_pred CCeEEEchHHHHHHHhcCC--CCCCccEEEEecCCCCCcc------hHHHHHHHH---------HHHh------------
Q 008209 9 LGGRYLTDGMLLREAMTDP--LLERYKVIVLDEAHERTLA------TDVLFGLLK---------EVLK------------ 59 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~l~~~~--~L~~~~~vIiDE~HeR~~~------~d~ll~~lk---------~~~~------------ 59 (574)
-+|+|+|||+|.++|.+++ .|.++.++||||++ |-++ .|.++.+++ .+++
T Consensus 271 ~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEAD-Rll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e 349 (620)
T KOG0350|consen 271 IDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEAD-RLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSE 349 (620)
T ss_pred cceEEcCchHHHHhccCCCCcchhhceEEEechHH-HHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHH
Confidence 3899999999999998765 59999999999999 3222 122222211 1111
Q ss_pred -------hCCCccEEEEccCC--CHHHHHhhhCCCC-eEEeCCe---eece----eEEeecCCchhHHHHHHHHHHHHHh
Q 008209 60 -------NRPDLKLVVMSATL--EAEKFQGYFYGAP-LMKVPGR---LHPV----EIFYTQEPERDYLEAAIRTVVQIHM 122 (574)
Q Consensus 60 -------~~~~~klvlmSATl--~~~~~~~~f~~~~-~i~~~gr---~~~v----~~~y~~~~~~~~~~~~~~~~~~i~~ 122 (574)
..+.+.-+.+|||+ |+.++.++--+.| +..+.+. .|.+ ...+.-.. ..+.. ..+.....
T Consensus 350 ~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~-~~~kp---l~~~~lI~ 425 (620)
T KOG0350|consen 350 LLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTE-PKFKP---LAVYALIT 425 (620)
T ss_pred HHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecc-cccch---HhHHHHHH
Confidence 12445577889998 7888888755555 4444321 1111 11111100 00111 12333333
Q ss_pred cCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccc
Q 008209 123 CEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIA 202 (574)
Q Consensus 123 ~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ia 202 (574)
.....++|+|+++.+.+.+++..|.=.+. .....+-.+.|++....|.+.++.|..|. ..|+|||+++
T Consensus 426 ~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~-----~~~~~~s~~t~~l~~k~r~k~l~~f~~g~-------i~vLIcSD~l 493 (620)
T KOG0350|consen 426 SNKLNRTLCFVNSVSSANRLAHVLKVEFC-----SDNFKVSEFTGQLNGKRRYKMLEKFAKGD-------INVLICSDAL 493 (620)
T ss_pred HhhcceEEEEecchHHHHHHHHHHHHHhc-----cccchhhhhhhhhhHHHHHHHHHHHhcCC-------ceEEEehhhh
Confidence 35678999999999999999999973332 24556667999999999999999999998 9999999999
Q ss_pred cccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCC-CeEEeecccccc
Q 008209 203 ETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQP-GKCFRLYTEKSF 268 (574)
Q Consensus 203 e~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~-G~~~rl~t~~~~ 268 (574)
++|||+.+|+.|||++. |.+--+|+||+||+||.|. |.||.+.++.+-
T Consensus 494 aRGiDv~~v~~VINYd~------------------P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~ 542 (620)
T KOG0350|consen 494 ARGIDVNDVDNVINYDP------------------PASDKTYVHRAGRTARAGQDGYAITLLDKHEK 542 (620)
T ss_pred hcCCcccccceEeecCC------------------CchhhHHHHhhcccccccCCceEEEeeccccc
Confidence 99999999999998776 8899999999999999996 999999887654
No 69
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.2e-19 Score=180.45 Aligned_cols=217 Identities=18% Similarity=0.306 Sum_probs=170.2
Q ss_pred CCeEEEchHHHHHHHhcCCC-CCCccEEEEecCCCCCcc--hHHHHHHHHHHHhhCCCccEEEEccCCC--HHHHHhhhC
Q 008209 9 LGGRYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLA--TDVLFGLLKEVLKNRPDLKLVVMSATLE--AEKFQGYFY 83 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~l~~~~~-L~~~~~vIiDE~HeR~~~--~d~ll~~lk~~~~~~~~~klvlmSATl~--~~~~~~~f~ 83 (574)
.+|+++|||..+..+..... ...+...|+||++|+-.. -|.+.++.+. .+++.|++++|||+. ...+.+-|.
T Consensus 146 ~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~---lp~~vQv~l~SAT~p~~vl~vt~~f~ 222 (397)
T KOG0327|consen 146 PHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQE---LPSDVQVVLLSATMPSDVLEVTKKFM 222 (397)
T ss_pred ceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHH---cCcchhheeecccCcHHHHHHHHHhc
Confidence 68999999999999977654 567999999999972211 2333333333 677899999999995 445566665
Q ss_pred CCCeEEeCCe---e-eceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCC
Q 008209 84 GAPLMKVPGR---L-HPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGP 159 (574)
Q Consensus 84 ~~~~i~~~gr---~-~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~ 159 (574)
.-|+...-.+ + .-+..+|.....+. .+.++..++. .-.+.++|++|++.+..+...|.. .+
T Consensus 223 ~~pv~i~vkk~~ltl~gikq~~i~v~k~~----k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~---------~~ 287 (397)
T KOG0327|consen 223 REPVRILVKKDELTLEGIKQFYINVEKEE----KLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRA---------HG 287 (397)
T ss_pred cCceEEEecchhhhhhheeeeeeeccccc----cccHHHHHHH--hhhcceEEecchhhHHHHHHHHhh---------CC
Confidence 5554322111 1 11344554443333 4456666665 678999999999999999999954 67
Q ss_pred eEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeec
Q 008209 160 VKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPI 239 (574)
Q Consensus 160 ~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~i 239 (574)
+.+..+|+.+.+.+|..+...|+.|. -+|+++|+.+++|+++-++..||++.+ |.
T Consensus 288 ~~~s~~~~d~~q~~R~~~~~ef~~gs-------srvlIttdl~argidv~~~slvinydl------------------P~ 342 (397)
T KOG0327|consen 288 FTVSAIHGDMEQNERDTLMREFRSGS-------SRVLITTDLLARGIDVQQVSLVVNYDL------------------PA 342 (397)
T ss_pred ceEEEeecccchhhhhHHHHHhhcCC-------ceEEeeccccccccchhhcceeeeecc------------------cc
Confidence 89999999999999999999999998 999999999999999999999999887 88
Q ss_pred cHhhHHHhcccCCCCC-CCeEEeecccccc
Q 008209 240 SKASAHQRSGRAGRTQ-PGKCFRLYTEKSF 268 (574)
Q Consensus 240 s~~~~~QR~GRaGR~~-~G~~~rl~t~~~~ 268 (574)
-+++|.||+||+||.| +|....+.++.+.
T Consensus 343 ~~~~yihR~gr~gr~grkg~~in~v~~~d~ 372 (397)
T KOG0327|consen 343 RKENYIHRIGRAGRFGRKGVAINFVTEEDV 372 (397)
T ss_pred chhhhhhhcccccccCCCceeeeeehHhhH
Confidence 8999999999999999 5999999988765
No 70
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.81 E-value=4.9e-20 Score=160.59 Aligned_cols=104 Identities=40% Similarity=0.735 Sum_probs=79.9
Q ss_pred HHHHHHHHHcCCcccCCC---C------CCchhHHHHHHHHHhccccceeeecCCCcEEEeecCeEEEEcCCCCCC-CCC
Q 008209 440 QQLVRIMARFNLKLCSND---F------NSRDYYVNIRKAMLAGYFMQVAHLERTGQYLTVKDNQVVHLHPSNCLD-HKP 509 (574)
Q Consensus 440 ~qL~~~l~~~~~~~~~~~---~------~~~~~~~~i~~~l~~g~~~niA~~~~~~~y~~~~~~~~~~ihpsS~l~-~~~ 509 (574)
+||.++|++.|+...+.. . .+..++..|++||++|||+|||++.+++.|.++.++..+.|||+|+++ .+|
T Consensus 1 ~QL~~il~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~aG~~~nvA~~~~~~~y~~~~~~~~v~iHPsS~l~~~~p 80 (114)
T PF07717_consen 1 KQLLRILERIGFVPQSASSQSISQRPPNENRDQWELIRAALCAGFYPNVARRDNKGSYKTLSNGQPVFIHPSSVLFKKPP 80 (114)
T ss_dssp HHHHHHHHHTT----------TTST-----HTHCHHHHHHHHHHHCCCEEEE-TTSSEEETTTG-EEEE-TTSTTTTTT-
T ss_pred CHHHHHHHHcCCCCCccccccccccccccccccHHHHHHHHHHhhhhheEEeCCCCCEEEecCCCEEEEecCcccccccc
Confidence 589999999988554321 1 011456789999999999999999988899999888899999999986 678
Q ss_pred cEEEEEEecccchhhcccccccCHHHHHhHcCcc
Q 008209 510 EWVIYNEYVLTSRNFIRTVTDVRGEWLIDIAPHY 543 (574)
Q Consensus 510 ~~ivy~e~~~t~k~~i~~vt~I~~~wl~~~~~~~ 543 (574)
+||+|+|++.|+|.||++||+|+|+||.+++|++
T Consensus 81 ~~vvy~e~~~t~k~y~~~~t~I~~~wl~~~~~~~ 114 (114)
T PF07717_consen 81 KWVVYHELVRTSKPYMRDVTAISPEWLLLFAPHY 114 (114)
T ss_dssp SEEEEEEEEESSSEEEEEEEE--HHHHHHH-TTT
T ss_pred ccchhhhheecCCcEEEECcCCCHHHHHHHcccC
Confidence 9999999999999999999999999999999975
No 71
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.80 E-value=1.8e-19 Score=198.86 Aligned_cols=223 Identities=20% Similarity=0.254 Sum_probs=170.7
Q ss_pred cCCCeEEEchHHHHHHHhcCC----CCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCC--HHHHHh
Q 008209 7 VLLGGRYLTDGMLLREAMTDP----LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE--AEKFQG 80 (574)
Q Consensus 7 ~~~~I~~~T~g~Ll~~l~~~~----~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~--~~~~~~ 80 (574)
.++.|+|||||+.+..+..+. .|.++.++|+||++ |..+..+.-...+.+-..+|+.|.|++|||.. .+.++.
T Consensus 487 Rg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaD-rmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~ 565 (997)
T KOG0334|consen 487 RGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEAD-RMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALAR 565 (997)
T ss_pred cCCceEEeccchhhhhHhhcCCccccccccceeeechhh-hhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHH
Confidence 468899999999999885443 47788899999999 67766665555554444689999999999995 455655
Q ss_pred hhCCCCe-EEeCCeee---ceeEEeecCC-chhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCC
Q 008209 81 YFYGAPL-MKVPGRLH---PVEIFYTQEP-ERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGD 155 (574)
Q Consensus 81 ~f~~~~~-i~~~gr~~---~v~~~y~~~~-~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~ 155 (574)
-....|+ +.+.|+.. .|+..+.-.+ +...+....+ ++... .+.++++||+..++.+..+.+.|.+
T Consensus 566 ~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~e-Ll~e~--~e~~~tiiFv~~qe~~d~l~~~L~~------- 635 (997)
T KOG0334|consen 566 KVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLE-LLGER--YEDGKTIIFVDKQEKADALLRDLQK------- 635 (997)
T ss_pred HhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHH-HHHHH--hhcCCEEEEEcCchHHHHHHHHHHh-------
Confidence 4444554 33444432 1333333233 2333332222 22222 3589999999999999999999986
Q ss_pred CCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceee
Q 008209 156 QVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLL 235 (574)
Q Consensus 156 ~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~ 235 (574)
.++.+..+||+.++.+|..+++.|+++. .++++||+++++|++++++..||++.+
T Consensus 636 --ag~~~~slHGgv~q~dR~sti~dfK~~~-------~~LLvaTsvvarGLdv~~l~Lvvnyd~---------------- 690 (997)
T KOG0334|consen 636 --AGYNCDSLHGGVDQHDRSSTIEDFKNGV-------VNLLVATSVVARGLDVKELILVVNYDF---------------- 690 (997)
T ss_pred --cCcchhhhcCCCchHHHHhHHHHHhccC-------ceEEEehhhhhcccccccceEEEEccc----------------
Confidence 5777888999999999999999999998 999999999999999999999999887
Q ss_pred eeeccHhhHHHhcccCCCCCC-CeEEeeccccc
Q 008209 236 VSPISKASAHQRSGRAGRTQP-GKCFRLYTEKS 267 (574)
Q Consensus 236 ~~~is~~~~~QR~GRaGR~~~-G~~~rl~t~~~ 267 (574)
|--.+.|.||.||+||+|+ |.||.+.++.+
T Consensus 691 --pnh~edyvhR~gRTgragrkg~AvtFi~p~q 721 (997)
T KOG0334|consen 691 --PNHYEDYVHRVGRTGRAGRKGAAVTFITPDQ 721 (997)
T ss_pred --chhHHHHHHHhcccccCCccceeEEEeChHH
Confidence 6667789999999999997 99999888733
No 72
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=4.2e-19 Score=185.04 Aligned_cols=223 Identities=17% Similarity=0.228 Sum_probs=165.4
Q ss_pred CCeEEEchHHHHHHHhcCC---CCCCccEEEEecCCCCCcchHHHHHHHHHHHh--hCCCccEEEEccCCC--HHHHHhh
Q 008209 9 LGGRYLTDGMLLREAMTDP---LLERYKVIVLDEAHERTLATDVLFGLLKEVLK--NRPDLKLVVMSATLE--AEKFQGY 81 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~l~~~~---~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~--~~~~~klvlmSATl~--~~~~~~~ 81 (574)
.+|.+.||-.+...+...+ .|+++.++|+||++- -..-..+...+-.+.. ..+++++=++|||+. ++.++.-
T Consensus 263 ~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~-lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~ 341 (593)
T KOG0344|consen 263 YDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADL-LFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAEL 341 (593)
T ss_pred HHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHh-hhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHH
Confidence 5788999999999988776 699999999999991 1111233333333333 348999999999994 5666655
Q ss_pred hCCCCe-EEeCCeee---ceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCC
Q 008209 82 FYGAPL-MKVPGRLH---PVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQV 157 (574)
Q Consensus 82 f~~~~~-i~~~gr~~---~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~ 157 (574)
-...++ +.+.-+.- .|+........+.- .+..+.++....-..++|||+-+.+.+..+...|.. .
T Consensus 342 i~~~~~~vivg~~~sa~~~V~QelvF~gse~~---K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~--------~ 410 (593)
T KOG0344|consen 342 IKSDLKRVIVGLRNSANETVDQELVFCGSEKG---KLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEI--------Y 410 (593)
T ss_pred hhccceeEEEecchhHhhhhhhhheeeecchh---HHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhh--------c
Confidence 433222 22222211 12211111111111 122333444445578999999999999999888852 3
Q ss_pred CCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeee
Q 008209 158 GPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVS 237 (574)
Q Consensus 158 ~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~ 237 (574)
.++.|-.+||..++.++..+++.|+.|. ..|++||+++++|+|+-||..|||+++
T Consensus 411 ~~i~v~vIh~e~~~~qrde~~~~FR~g~-------IwvLicTdll~RGiDf~gvn~VInyD~------------------ 465 (593)
T KOG0344|consen 411 DNINVDVIHGERSQKQRDETMERFRIGK-------IWVLICTDLLARGIDFKGVNLVINYDF------------------ 465 (593)
T ss_pred cCcceeeEecccchhHHHHHHHHHhccC-------eeEEEehhhhhccccccCcceEEecCC------------------
Confidence 6788999999999999999999999999 999999999999999999999999887
Q ss_pred eccHhhHHHhcccCCCCCC-CeEEeecccccc
Q 008209 238 PISKASAHQRSGRAGRTQP-GKCFRLYTEKSF 268 (574)
Q Consensus 238 ~is~~~~~QR~GRaGR~~~-G~~~rl~t~~~~ 268 (574)
|-|..+|+||.||+||.++ |..|.+|++++.
T Consensus 466 p~s~~syihrIGRtgRag~~g~Aitfytd~d~ 497 (593)
T KOG0344|consen 466 PQSDLSYIHRIGRTGRAGRSGKAITFYTDQDM 497 (593)
T ss_pred CchhHHHHHHhhccCCCCCCcceEEEeccccc
Confidence 8889999999999999996 999999999665
No 73
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.79 E-value=1.7e-19 Score=190.93 Aligned_cols=236 Identities=20% Similarity=0.228 Sum_probs=175.9
Q ss_pred CCCeEEEchHHHHHHHhcCCC-CCCccEEEEecCC-----CCCcchHHHHHHHHHHHhhCCCccEEEEccCC-CHHHHHh
Q 008209 8 LLGGRYLTDGMLLREAMTDPL-LERYKVIVLDEAH-----ERTLATDVLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQG 80 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~~-L~~~~~vIiDE~H-----eR~~~~d~ll~~lk~~~~~~~~~klvlmSATl-~~~~~~~ 80 (574)
..--.+||+.+|-.+|-.... ...+.+||+||+| |||+.++--+.+ ..+++|.|.+|||+ |+-.|++
T Consensus 211 ~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIl------lP~~vr~VFLSATiPNA~qFAe 284 (1041)
T KOG0948|consen 211 DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIIL------LPDNVRFVFLSATIPNARQFAE 284 (1041)
T ss_pred CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEe------ccccceEEEEeccCCCHHHHHH
Confidence 344589999999999987764 8999999999999 999887754443 34589999999999 8999999
Q ss_pred hhC-----CCCeEEeCCeeeceeEEeecC---------Cc-----hhHHHHHHH--------------------------
Q 008209 81 YFY-----GAPLMKVPGRLHPVEIFYTQE---------PE-----RDYLEAAIR-------------------------- 115 (574)
Q Consensus 81 ~f~-----~~~~i~~~gr~~~v~~~y~~~---------~~-----~~~~~~~~~-------------------------- 115 (574)
|.. +|.|+..+-|+-|.+.+--|. .+ ++.+..+..
T Consensus 285 WI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~ 364 (1041)
T KOG0948|consen 285 WICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGK 364 (1041)
T ss_pred HHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCC
Confidence 983 678888899998887662221 00 111111111
Q ss_pred --------HHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHH------------------HhhcCCCCCC----------
Q 008209 116 --------TVVQIHMCEPSGDILVFLTGEEEIEDACRKITKE------------------ITNMGDQVGP---------- 159 (574)
Q Consensus 116 --------~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~------------------~~~~~~~~~~---------- 159 (574)
.++.........+|+||.=+++||+..+-.+.+. +..++.+...
T Consensus 365 ~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPL 444 (1041)
T KOG0948|consen 365 GPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPL 444 (1041)
T ss_pred CCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHH
Confidence 1122222234568999999999999988887651 1111211111
Q ss_pred --eEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeee
Q 008209 160 --VKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVS 237 (574)
Q Consensus 160 --~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~ 237 (574)
-.+..+||||-+--++-|.--|.+|. .||++||-+.+.|+|.|.-++|. ...+.||.+. .+
T Consensus 445 L~RGIGIHHsGLLPIlKE~IEILFqEGL-------vKvLFATETFsiGLNMPAkTVvF----T~~rKfDG~~------fR 507 (1041)
T KOG0948|consen 445 LRRGIGIHHSGLLPILKEVIEILFQEGL-------VKVLFATETFSIGLNMPAKTVVF----TAVRKFDGKK------FR 507 (1041)
T ss_pred HHhccccccccchHHHHHHHHHHHhccH-------HHHHHhhhhhhhccCCcceeEEE----eeccccCCcc------ee
Confidence 13567899999888877777788888 99999999999999999777777 5666677665 46
Q ss_pred eccHhhHHHhcccCCCCC---CCeEEeecccc
Q 008209 238 PISKASAHQRSGRAGRTQ---PGKCFRLYTEK 266 (574)
Q Consensus 238 ~is~~~~~QR~GRaGR~~---~G~~~rl~t~~ 266 (574)
|+|--+|+||+|||||.| .|+|+.+.++.
T Consensus 508 wissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 508 WISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred eecccceEEecccccccCCCCCceEEEEecCc
Confidence 999999999999999999 69999998864
No 74
>PRK13766 Hef nuclease; Provisional
Probab=99.76 E-value=1.2e-17 Score=192.22 Aligned_cols=112 Identities=25% Similarity=0.326 Sum_probs=96.9
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCC--------CCHHHHhhhcCCCCCCCCCCCCCCcEE
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYST--------LPPAMQQKIFEPAPPPSKEGGPPGRKI 195 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~--------l~~~~q~~v~~~~~~g~~~~~~~~~kv 195 (574)
.+++++|||+++++.++.+.+.|.+ .++.+..+||. +++.+|..+++.|+.|. .+|
T Consensus 363 ~~~~kvlIF~~~~~t~~~L~~~L~~---------~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~-------~~v 426 (773)
T PRK13766 363 NPDSRIIVFTQYRDTAEKIVDLLEK---------EGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGE-------FNV 426 (773)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHh---------CCCceEEEEccccccccCCCCHHHHHHHHHHHHcCC-------CCE
Confidence 4678999999999999999999965 34556667665 99999999999999887 899
Q ss_pred EEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEEeeccccccc
Q 008209 196 VVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFN 269 (574)
Q Consensus 196 ivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl~t~~~~~ 269 (574)
+|||++++.|+|+|++++||.++. +.+...++||+||+||.++|.+|.|+++...+
T Consensus 427 LvaT~~~~eGldi~~~~~VI~yd~------------------~~s~~r~iQR~GR~gR~~~~~v~~l~~~~t~e 482 (773)
T PRK13766 427 LVSTSVAEEGLDIPSVDLVIFYEP------------------VPSEIRSIQRKGRTGRQEEGRVVVLIAKGTRD 482 (773)
T ss_pred EEECChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhcccCcCCCCEEEEEEeCCChH
Confidence 999999999999999999996443 56788999999999999999999999876653
No 75
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.76 E-value=6.8e-19 Score=149.76 Aligned_cols=91 Identities=48% Similarity=0.843 Sum_probs=67.1
Q ss_pred HHHHHHHHcCCccCCCCcChhhhhhccCCCCHHHHHHHHhccCCCCchhhHhHHhhccCCCcccCChhHHHHHH--HHHH
Q 008209 316 RALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAAD--EAKA 393 (574)
Q Consensus 316 ~al~~L~~lgald~~~~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~~~~~~i~a~ls~~~~f~~~~~~~~~~~--~~~~ 393 (574)
.|++.|+.+||||++|+||++|+.|++||++|++||||+.|..++|.+++++|+|+|+++++|..+.+..+..+ ..+.
T Consensus 1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~~~~~~~~~~ 80 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDKEENAEQDNAKK 80 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCGHHHHHH--HHH
T ss_pred CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999998754333222 2333
Q ss_pred ---------hhCCCCCcHHHHH
Q 008209 394 ---------RFGHIDGDHLTLL 406 (574)
Q Consensus 394 ---------~~~~~~sD~l~~l 406 (574)
.+.+..|||++++
T Consensus 81 ~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 81 KFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp TT----------BTTBHHHHHH
T ss_pred HhhhhhcccccCCCCCCHHhcC
Confidence 3468889999986
No 76
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.76 E-value=3.2e-18 Score=185.46 Aligned_cols=237 Identities=14% Similarity=0.157 Sum_probs=171.8
Q ss_pred ccCCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCC-----CCCcchHHHHHHHHHHHhhCCCccEEEEccCC-CHHHH
Q 008209 6 CVLLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAH-----ERTLATDVLFGLLKEVLKNRPDLKLVVMSATL-EAEKF 78 (574)
Q Consensus 6 ~~~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~H-----eR~~~~d~ll~~lk~~~~~~~~~klvlmSATl-~~~~~ 78 (574)
.|...+++||+.+|-.+|-+.. .++++.+||+|||| |||+.++-.+..+ .+.+++|++|||+ |...|
T Consensus 377 nPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMl------P~HV~~IlLSATVPN~~EF 450 (1248)
T KOG0947|consen 377 NPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIML------PRHVNFILLSATVPNTLEF 450 (1248)
T ss_pred CCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeec------cccceEEEEeccCCChHHH
Confidence 4567789999999999997765 58999999999999 9999988765554 3489999999999 89999
Q ss_pred HhhhCC-----CCeEEeCCeeeceeEEeecCCc--------hhHHH----------------------------------
Q 008209 79 QGYFYG-----APLMKVPGRLHPVEIFYTQEPE--------RDYLE---------------------------------- 111 (574)
Q Consensus 79 ~~~f~~-----~~~i~~~gr~~~v~~~y~~~~~--------~~~~~---------------------------------- 111 (574)
++|.+. .-||+...|+.|.+.+.....+ ..++.
T Consensus 451 A~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~g 530 (1248)
T KOG0947|consen 451 ADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRG 530 (1248)
T ss_pred HHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccccccccccccccC
Confidence 999974 2366777888887765321100 00000
Q ss_pred -----------------------HHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHH------------------
Q 008209 112 -----------------------AAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEI------------------ 150 (574)
Q Consensus 112 -----------------------~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~------------------ 150 (574)
.....+.++ ...+--+++||+=+++.|++.++.|...-
T Consensus 531 gk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L-~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~ 609 (1248)
T KOG0947|consen 531 GKTNYHNGGSRGSGIGKNRRKQPTWLDLINHL-RKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAV 609 (1248)
T ss_pred CcCCCCCCCcccccccccccccchHHHHHHHH-hhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHH
Confidence 011112222 22345689999999999999999987510
Q ss_pred hhcCCCC------------CCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCC
Q 008209 151 TNMGDQV------------GPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPG 218 (574)
Q Consensus 151 ~~~~~~~------------~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g 218 (574)
..+.+.. ..-.+..+|||+-+--+.-|..-|..|. .||++||-+.+.|||.|.-++|+|+=
T Consensus 610 ~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGl-------VKVLFATETFAMGVNMPARtvVF~Sl 682 (1248)
T KOG0947|consen 610 ARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGL-------VKVLFATETFAMGVNMPARTVVFSSL 682 (1248)
T ss_pred HhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCc-------eEEEeehhhhhhhcCCCceeEEeeeh
Confidence 0011000 0124678999999988888888888888 99999999999999999888888543
Q ss_pred cccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC---CCeEEeecccc
Q 008209 219 FAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ---PGKCFRLYTEK 266 (574)
Q Consensus 219 ~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~---~G~~~rl~t~~ 266 (574)
. .+|.. ..+...+-+|.||+|||||.| .|.++.+....
T Consensus 683 ~----KhDG~------efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 683 R----KHDGN------EFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred h----hccCc------ceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 2 23333 235788899999999999999 58888775543
No 77
>PRK09694 helicase Cas3; Provisional
Probab=99.75 E-value=1.7e-17 Score=187.99 Aligned_cols=213 Identities=15% Similarity=0.145 Sum_probs=133.4
Q ss_pred CCeEEEchHHHHHHHhcCC--CCCC----ccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHH---H
Q 008209 9 LGGRYLTDGMLLREAMTDP--LLER----YKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKF---Q 79 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~l~~~~--~L~~----~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~---~ 79 (574)
++|+|+|.--++.-.+.-+ .+.. -++|||||||--+..+.-+|..+-+.+.. .+.++|+||||+....- .
T Consensus 411 api~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAyD~ym~~lL~~~L~~l~~-~g~~vIllSATLP~~~r~~L~ 489 (878)
T PRK09694 411 GQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAYDAYMYGLLEAVLKAQAQ-AGGSVILLSATLPATLKQKLL 489 (878)
T ss_pred CCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhCCHHHHHHHHHHHHHHHh-cCCcEEEEeCCCCHHHHHHHH
Confidence 7899999988886555432 2332 35999999998777766544433333332 36789999999975332 2
Q ss_pred hhhCCC---------CeEEeCC----eee-------------ceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEc
Q 008209 80 GYFYGA---------PLMKVPG----RLH-------------PVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFL 133 (574)
Q Consensus 80 ~~f~~~---------~~i~~~g----r~~-------------~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl 133 (574)
+-+++. |.+...+ ..+ .|.+..............+..+.... ..++++|||+
T Consensus 490 ~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~ 567 (878)
T PRK09694 490 DTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLIC 567 (878)
T ss_pred HHhccccccccccccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEE
Confidence 222221 1211110 001 11111111010011122333443332 3578999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHh----hhcCCC-CCCCCCCCCCCcEEEEecccccccccC
Q 008209 134 TGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQ----KIFEPA-PPPSKEGGPPGRKIVVSTNIAETSLTI 208 (574)
Q Consensus 134 ~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~----~v~~~~-~~g~~~~~~~~~kvivaT~iae~giti 208 (574)
||++.++++++.|++.. .....+..+||.++..+|. ++++.+ ++|. ++..+|+|||+++|+||||
T Consensus 568 NTV~~Aq~ly~~L~~~~------~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~----r~~~~ILVaTQViE~GLDI 637 (878)
T PRK09694 568 NLVDDAQKLYQRLKELN------NTQVDIDLFHARFTLNDRREKEQRVIENFGKNGK----RNQGRILVATQVVEQSLDL 637 (878)
T ss_pred CCHHHHHHHHHHHHhhC------CCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCC----cCCCeEEEECcchhheeec
Confidence 99999999999998631 1235799999999999984 455555 3332 1225899999999999999
Q ss_pred CCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC
Q 008209 209 DGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ 255 (574)
Q Consensus 209 p~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~ 255 (574)
+ ++++|.. ....++++||+||+||.+
T Consensus 638 d-~DvlItd--------------------laPidsLiQRaGR~~R~~ 663 (878)
T PRK09694 638 D-FDWLITQ--------------------LCPVDLLFQRLGRLHRHH 663 (878)
T ss_pred C-CCeEEEC--------------------CCCHHHHHHHHhccCCCC
Confidence 5 7777721 233579999999999986
No 78
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.73 E-value=4.4e-17 Score=177.73 Aligned_cols=208 Identities=17% Similarity=0.156 Sum_probs=137.0
Q ss_pred CCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCH-H--H--HHhhh
Q 008209 8 LLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-E--K--FQGYF 82 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~-~--~--~~~~f 82 (574)
+.+|+|+|++.|.+... ..+.++++||+||+|. ... +-+-.+++. ..+..+++++|||+.- . . +..+|
T Consensus 201 ~~~I~VaT~qsl~~~~~--~~~~~~~~iIvDEaH~-~~~-~~~~~il~~---~~~~~~~lGLTATp~~~~~~~~~~~~~f 273 (501)
T PHA02558 201 DAPIVVSTWQSAVKQPK--EWFDQFGMVIVDECHL-FTG-KSLTSIITK---LDNCKFKFGLTGSLRDGKANILQYVGLF 273 (501)
T ss_pred CCCEEEeeHHHHhhchh--hhccccCEEEEEchhc-ccc-hhHHHHHHh---hhccceEEEEeccCCCccccHHHHHHhh
Confidence 46899999999876542 3578999999999994 222 222222222 2234579999999942 1 1 33455
Q ss_pred CCCCeEEe-------CCeeeceeEE--eecCCc--------hhHHH------------HHHHHHHHHHhcCCCCCEEEEc
Q 008209 83 YGAPLMKV-------PGRLHPVEIF--YTQEPE--------RDYLE------------AAIRTVVQIHMCEPSGDILVFL 133 (574)
Q Consensus 83 ~~~~~i~~-------~gr~~~v~~~--y~~~~~--------~~~~~------------~~~~~~~~i~~~~~~g~iLVFl 133 (574)
++. ...+ .|...++++. +...+. .+|-+ ..+..+..... ..++++|||+
T Consensus 274 G~i-~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~-~~~~~~lV~~ 351 (501)
T PHA02558 274 GDI-FKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLA-KKGENTFVMF 351 (501)
T ss_pred CCc-eEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHH-hcCCCEEEEE
Confidence 431 1111 1111122111 111010 01100 11111111112 3567899999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEec-ccccccccCCCeE
Q 008209 134 TGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVST-NIAETSLTIDGIV 212 (574)
Q Consensus 134 ~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT-~iae~gitip~v~ 212 (574)
...+.++.+++.|.+ .+..+..+||+++.++|..+.+.+..|. ..||||| +++++|+|+|+++
T Consensus 352 ~~~~h~~~L~~~L~~---------~g~~v~~i~G~~~~~eR~~i~~~~~~~~-------~~vLvaT~~~l~eG~Dip~ld 415 (501)
T PHA02558 352 KYVEHGKPLYEMLKK---------VYDKVYYVSGEVDTEDRNEMKKIAEGGK-------GIIIVASYGVFSTGISIKNLH 415 (501)
T ss_pred EEHHHHHHHHHHHHH---------cCCCEEEEeCCCCHHHHHHHHHHHhCCC-------CeEEEEEcceecccccccccc
Confidence 999999999999976 3567999999999999999988888777 7899998 8999999999999
Q ss_pred EEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCe
Q 008209 213 YVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGK 258 (574)
Q Consensus 213 ~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~ 258 (574)
+||...- +-|...+.||+||+||.++|+
T Consensus 416 ~vIl~~p------------------~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 416 HVIFAHP------------------SKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred EEEEecC------------------CcchhhhhhhhhccccCCCCC
Confidence 9994322 457889999999999999864
No 79
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.73 E-value=2.1e-17 Score=185.84 Aligned_cols=238 Identities=19% Similarity=0.216 Sum_probs=177.3
Q ss_pred cCCCeEEEchHHHHHHHhcC-CCCCCccEEEEecCC-----CCCcchHHHHHHHHHHHhhCCCccEEEEccCC-CHHHHH
Q 008209 7 VLLGGRYLTDGMLLREAMTD-PLLERYKVIVLDEAH-----ERTLATDVLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQ 79 (574)
Q Consensus 7 ~~~~I~~~T~g~Ll~~l~~~-~~L~~~~~vIiDE~H-----eR~~~~d~ll~~lk~~~~~~~~~klvlmSATl-~~~~~~ 79 (574)
+...+++||+.+|-.+|..+ ..+.++.+||+||+| +||+..+-.+.++ ..++++|++|||+ |++.|+
T Consensus 204 ~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l------P~~v~~v~LSATv~N~~EF~ 277 (1041)
T COG4581 204 PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILL------PDHVRFVFLSATVPNAEEFA 277 (1041)
T ss_pred CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhc------CCCCcEEEEeCCCCCHHHHH
Confidence 45889999999999999877 579999999999999 8999888776554 3478999999999 899999
Q ss_pred hhhC-----CCCeEEeCCeeeceeEEeecCC--------chhHHHHH----HH---------------------------
Q 008209 80 GYFY-----GAPLMKVPGRLHPVEIFYTQEP--------ERDYLEAA----IR--------------------------- 115 (574)
Q Consensus 80 ~~f~-----~~~~i~~~gr~~~v~~~y~~~~--------~~~~~~~~----~~--------------------------- 115 (574)
.|++ ++-++..+-|+.|.+.+|.... ..++.... ..
T Consensus 278 ~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~ 357 (1041)
T COG4581 278 EWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKAL 357 (1041)
T ss_pred HHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCcccccccccccccc
Confidence 9997 5668888999999888776431 01100000 00
Q ss_pred -----------HHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHH----------H---------HhhcCCCCCCe-----
Q 008209 116 -----------TVVQIHMCEPSGDILVFLTGEEEIEDACRKITK----------E---------ITNMGDQVGPV----- 160 (574)
Q Consensus 116 -----------~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~----------~---------~~~~~~~~~~~----- 160 (574)
.++........-++++|+=++.+|+..+..+.. . ...+..+...+
T Consensus 358 ~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~ 437 (1041)
T COG4581 358 RGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQIL 437 (1041)
T ss_pred CCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHH
Confidence 011122223456899999999999998888762 1 01111111111
Q ss_pred --------EEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcc
Q 008209 161 --------KVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVE 232 (574)
Q Consensus 161 --------~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~ 232 (574)
.+..+|+||-+..+..+.+-|..|. .||++||-+.+-|++.|.-++|+ +++ .-||...
T Consensus 438 ~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GL-------vkvvFaTeT~s~GiNmPartvv~-~~l---~K~dG~~--- 503 (1041)
T COG4581 438 EISALLLRGIAVHHAGLLPAIKELVEELFQEGL-------VKVVFATETFAIGINMPARTVVF-TSL---SKFDGNG--- 503 (1041)
T ss_pred HHHHHHhhhhhhhccccchHHHHHHHHHHhccc-------eeEEeehhhhhhhcCCcccceee-eee---EEecCCc---
Confidence 2347899999999999999999998 99999999999999999655555 444 4455433
Q ss_pred eeeeeeccHhhHHHhcccCCCCC---CCeEEeeccccc
Q 008209 233 SLLVSPISKASAHQRSGRAGRTQ---PGKCFRLYTEKS 267 (574)
Q Consensus 233 ~l~~~~is~~~~~QR~GRaGR~~---~G~~~rl~t~~~ 267 (574)
.+|.+..+|.|++|||||.| .|..+.+++...
T Consensus 504 ---~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~ 538 (1041)
T COG4581 504 ---HRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFE 538 (1041)
T ss_pred ---eeecChhHHHHhhhhhccccccccceEEEecCCCC
Confidence 46999999999999999999 599998866533
No 80
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.73 E-value=3.6e-17 Score=185.94 Aligned_cols=227 Identities=24% Similarity=0.262 Sum_probs=160.1
Q ss_pred CCCeEEEchHHHHHHHhcCC-----CCCCccEEEEecCC-CCCcchHHHHHHHHHHHh----hCCCccEEEEccCC-CHH
Q 008209 8 LLGGRYLTDGMLLREAMTDP-----LLERYKVIVLDEAH-ERTLATDVLFGLLKEVLK----NRPDLKLVVMSATL-EAE 76 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-----~L~~~~~vIiDE~H-eR~~~~d~ll~~lk~~~~----~~~~~klvlmSATl-~~~ 76 (574)
.++|++++|-||-..++.+. .++++++||+||+| -||...--+..++|++.. ...++++|.+|||+ +..
T Consensus 167 pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~ 246 (851)
T COG1205 167 PPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPG 246 (851)
T ss_pred CCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChH
Confidence 58999999999988776542 47899999999999 566655444444555443 22479999999999 555
Q ss_pred HHH-hhhCCCCeEE-eCCeeec--eeEEeecCCc---------hhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHH
Q 008209 77 KFQ-GYFYGAPLMK-VPGRLHP--VEIFYTQEPE---------RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDAC 143 (574)
Q Consensus 77 ~~~-~~f~~~~~i~-~~gr~~~--v~~~y~~~~~---------~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~ 143 (574)
.+. ++++ ...-. +.+...| -..+....+. .+... ....+....- .++-+.|||+-++..++.+.
T Consensus 247 e~~~~l~~-~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~-~~~~~~~~~~-~~~~~tL~F~~sr~~~e~~~ 323 (851)
T COG1205 247 EFAEELFG-RDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALA-ELATLAALLV-RNGIQTLVFFRSRKQVELLY 323 (851)
T ss_pred HHHHHhcC-CcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHH-HHHHHHHHHH-HcCceEEEEEehhhhhhhhh
Confidence 554 5554 22222 3332222 2222222220 01111 1122222111 35779999999999999998
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccce
Q 008209 144 RKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQK 223 (574)
Q Consensus 144 ~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~ 223 (574)
....+.+...+ ......+..++++++.+++.++...++.|. .++++|||.+|.||+|.++..||.+|+
T Consensus 324 ~~~~~~~~~~~-~~l~~~v~~~~~~~~~~er~~ie~~~~~g~-------~~~~~st~AlelgidiG~ldavi~~g~---- 391 (851)
T COG1205 324 LSPRRRLVREG-GKLLDAVSTYRAGLHREERRRIEAEFKEGE-------LLGVIATNALELGIDIGSLDAVIAYGY---- 391 (851)
T ss_pred hchhHHHhhcc-hhhhhheeeccccCCHHHHHHHHHHHhcCC-------ccEEecchhhhhceeehhhhhHhhcCC----
Confidence 66665554433 234467899999999999999999999998 999999999999999999999999998
Q ss_pred eecCCCCcceeeeeec-cHhhHHHhcccCCCCC-CCeEEeec
Q 008209 224 VYNPRVRVESLLVSPI-SKASAHQRSGRAGRTQ-PGKCFRLY 263 (574)
Q Consensus 224 ~y~~~~~~~~l~~~~i-s~~~~~QR~GRaGR~~-~G~~~rl~ 263 (574)
|. |..++.||+|||||.+ .+..+-.+
T Consensus 392 --------------P~~s~~~~~Q~~GRaGR~~~~~l~~~v~ 419 (851)
T COG1205 392 --------------PGVSVLSFRQRAGRAGRRGQESLVLVVL 419 (851)
T ss_pred --------------CCchHHHHHHhhhhccCCCCCceEEEEe
Confidence 87 8999999999999998 34433333
No 81
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.71 E-value=7.4e-17 Score=176.28 Aligned_cols=236 Identities=17% Similarity=0.206 Sum_probs=164.7
Q ss_pred CCeEEEchH---HHHHHHhcCCCCCCccEEEEecCC-----CCCcchHHHHHHHHHHHhhCCCccEEEEccCC-CHHHHH
Q 008209 9 LGGRYLTDG---MLLREAMTDPLLERYKVIVLDEAH-----ERTLATDVLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQ 79 (574)
Q Consensus 9 ~~I~~~T~g---~Ll~~l~~~~~L~~~~~vIiDE~H-----eR~~~~d~ll~~lk~~~~~~~~~klvlmSATl-~~~~~~ 79 (574)
..+.+||-. .|.+.|.....+..++.||+||.| +||...+.+|+-+..... ...+|+|+||||+ |.+.++
T Consensus 316 ~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~-~~~~~iIGMSATi~N~~lL~ 394 (1008)
T KOG0950|consen 316 ESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENL-ETSVQIIGMSATIPNNSLLQ 394 (1008)
T ss_pred eeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhcc-ccceeEeeeecccCChHHHH
Confidence 567888864 466777777788999999999999 888888888776554332 2348899999999 789999
Q ss_pred hhhCCCCeEEeCCeeeceeEEeecCC---chhHHHHHHHHHHH----------------H-Hhc-CCCCCEEEEcCCHHH
Q 008209 80 GYFYGAPLMKVPGRLHPVEIFYTQEP---ERDYLEAAIRTVVQ----------------I-HMC-EPSGDILVFLTGEEE 138 (574)
Q Consensus 80 ~~f~~~~~i~~~gr~~~v~~~y~~~~---~~~~~~~~~~~~~~----------------i-~~~-~~~g~iLVFl~~~~e 138 (574)
+||+ +.+....-|+.|...+-.+.. +.+ ....+..+.. . ... .++.++|||||++..
T Consensus 395 ~~L~-A~~y~t~fRPv~L~E~ik~G~~i~~~~-r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ 472 (1008)
T KOG0950|consen 395 DWLD-AFVYTTRFRPVPLKEYIKPGSLIYESS-RNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKN 472 (1008)
T ss_pred HHhh-hhheecccCcccchhccCCCcccccch-hhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccc
Confidence 9985 444443334333322211100 000 0011111110 0 001 124459999999999
Q ss_pred HHHHHHHHHHHHhhc----------------------C-------CCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCC
Q 008209 139 IEDACRKITKEITNM----------------------G-------DQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGG 189 (574)
Q Consensus 139 i~~~~~~L~~~~~~~----------------------~-------~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~ 189 (574)
++.++..+.+.+... . .......+..+|+|++.++|+.|...|+.|.
T Consensus 473 ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~---- 548 (1008)
T KOG0950|consen 473 CENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGN---- 548 (1008)
T ss_pred hHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcC----
Confidence 999987776532210 0 1123456788999999999999999999998
Q ss_pred CCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC---CCeEEeecccc
Q 008209 190 PPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ---PGKCFRLYTEK 266 (574)
Q Consensus 190 ~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~---~G~~~rl~t~~ 266 (574)
..|++||++++.|++.|..+|+|-.-+ .| ....+..+|.||.|||||+| -|.++.++.+.
T Consensus 549 ---i~vl~aTSTlaaGVNLPArRVIiraP~---------~g-----~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~ 611 (1008)
T KOG0950|consen 549 ---IFVLVATSTLAAGVNLPARRVIIRAPY---------VG-----REFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSS 611 (1008)
T ss_pred ---eEEEEecchhhccCcCCcceeEEeCCc---------cc-----cchhhhhhHHhhhhhhhhcccccCcceEEEeecc
Confidence 999999999999999999999883322 22 33678899999999999998 48999988876
Q ss_pred cc
Q 008209 267 SF 268 (574)
Q Consensus 267 ~~ 268 (574)
+.
T Consensus 612 e~ 613 (1008)
T KOG0950|consen 612 EK 613 (1008)
T ss_pred ch
Confidence 53
No 82
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.71 E-value=2e-16 Score=171.64 Aligned_cols=115 Identities=20% Similarity=0.300 Sum_probs=91.9
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEc----CCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEec
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPL----YSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVST 199 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~l----hs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT 199 (574)
.+...++||+.+++.++.+.+.|.+ +...+- .+.+-+..= -.+|++.+|..+++.|+.|. .+|+|||
T Consensus 411 ~~dsR~IIFve~R~sa~~l~~~l~~-~~~~~i-r~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~-------~NvLVAT 481 (746)
T KOG0354|consen 411 NPDSRTIIFVETRESALALKKWLLQ-LHELGI-KAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGE-------INVLVAT 481 (746)
T ss_pred CCCccEEEEEehHHHHHHHHHHHHh-hhhccc-ccceeeeccccccccccCHHHHHHHHHHHhCCC-------ccEEEEe
Confidence 4567899999999999999999985 211110 112222211 15899999999999999999 9999999
Q ss_pred ccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEEeecccc
Q 008209 200 NIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEK 266 (574)
Q Consensus 200 ~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl~t~~ 266 (574)
+|+|-|+||+.+..||-+|+ -.+.-..+||+|| ||...|.|+.|++..
T Consensus 482 SV~EEGLDI~ec~lVIcYd~------------------~snpIrmIQrrGR-gRa~ns~~vll~t~~ 529 (746)
T KOG0354|consen 482 SVAEEGLDIGECNLVICYDY------------------SSNPIRMVQRRGR-GRARNSKCVLLTTGS 529 (746)
T ss_pred cchhccCCcccccEEEEecC------------------CccHHHHHHHhcc-ccccCCeEEEEEcch
Confidence 99999999999999995554 3456689999999 999999999999953
No 83
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.68 E-value=5.9e-17 Score=135.41 Aligned_cols=90 Identities=56% Similarity=0.879 Sum_probs=81.0
Q ss_pred HHHHHHHHcCCccCCCCcChhhhhhccCCCCHHHHHHHHhccCC-CCchhhHhHHhhccCCCcccCChhHHHHHHHHHHh
Q 008209 316 RALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKY-NCSNEILSISAMLSVPNCFVRPREAQKAADEAKAR 394 (574)
Q Consensus 316 ~al~~L~~lgald~~~~lT~lG~~~~~lpl~p~~~~~ll~~~~~-~c~~~~~~i~a~ls~~~~f~~~~~~~~~~~~~~~~ 394 (574)
+|++.|+.+||||++|+||++|+.|++||++|++||||+.|..+ +|.+++++|+|+++..++|..+ ....+....+..
T Consensus 1 ~A~~~L~~LgAld~~~~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~~~-~~~~~~~~~~~~ 79 (92)
T smart00847 1 AALELLYELGALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFPRP-EKRAEADAARRR 79 (92)
T ss_pred CHHHHHHHCCCcCCCCCcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcCCc-hHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999 8999999999999999988776 455666777888
Q ss_pred hCCC-CCcHHHHH
Q 008209 395 FGHI-DGDHLTLL 406 (574)
Q Consensus 395 ~~~~-~sD~l~~l 406 (574)
|.+. .|||++++
T Consensus 80 ~~~~~~~D~~~~l 92 (92)
T smart00847 80 FASGRESDHLTLL 92 (92)
T ss_pred ccCCCCCChhhhC
Confidence 8877 79999863
No 84
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.68 E-value=2.4e-16 Score=178.23 Aligned_cols=223 Identities=18% Similarity=0.234 Sum_probs=161.3
Q ss_pred CCeEEEchHHHHHHHh---cCCCCCC---ccEEEEecCC---CCCcchHHHHHHHHHHHhhCCCccEEEEccCCCH---H
Q 008209 9 LGGRYLTDGMLLREAM---TDPLLER---YKVIVLDEAH---ERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA---E 76 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~l~---~~~~L~~---~~~vIiDE~H---eR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~---~ 76 (574)
-+|+|+||..+...-. ....|.. +..+|||||| +.+.+----...+..+..+.+.+.+|.++||... +
T Consensus 357 ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~ 436 (941)
T KOG0351|consen 357 IKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVRE 436 (941)
T ss_pred EEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHH
Confidence 4689999988765321 1112444 8999999999 5554443344445455557788899999999853 3
Q ss_pred HHHhhhC--CCCeEEeCCeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcC
Q 008209 77 KFQGYFY--GAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMG 154 (574)
Q Consensus 77 ~~~~~f~--~~~~i~~~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~ 154 (574)
.+.+-++ ++.++. .... +-..+|.-.+..+ ..........+-...+.+..||+|.++.+++.+...|.+
T Consensus 437 DIi~~L~l~~~~~~~-~sfn-R~NL~yeV~~k~~-~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~------ 507 (941)
T KOG0351|consen 437 DVIRSLGLRNPELFK-SSFN-RPNLKYEVSPKTD-KDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRS------ 507 (941)
T ss_pred HHHHHhCCCCcceec-ccCC-CCCceEEEEeccC-ccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHH------
Confidence 4444443 333322 2211 1122222111111 111222233333346789999999999999999999987
Q ss_pred CCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCccee
Q 008209 155 DQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESL 234 (574)
Q Consensus 155 ~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l 234 (574)
..+....+|+||++.+|..|-..+-.++ .+||+||=....|||-|||+.||++++
T Consensus 508 ---~~~~a~~YHAGl~~~~R~~Vq~~w~~~~-------~~VivATVAFGMGIdK~DVR~ViH~~l--------------- 562 (941)
T KOG0351|consen 508 ---LGKSAAFYHAGLPPKERETVQKAWMSDK-------IRVIVATVAFGMGIDKPDVRFVIHYSL--------------- 562 (941)
T ss_pred ---hchhhHhhhcCCCHHHHHHHHHHHhcCC-------CeEEEEEeeccCCCCCCceeEEEECCC---------------
Confidence 3477889999999999999999999888 999999999999999999999999999
Q ss_pred eeeeccHhhHHHhcccCCCCC-CCeEEeecccccc
Q 008209 235 LVSPISKASAHQRSGRAGRTQ-PGKCFRLYTEKSF 268 (574)
Q Consensus 235 ~~~~is~~~~~QR~GRaGR~~-~G~~~rl~t~~~~ 268 (574)
|-|.+.|.|-+|||||-| +..|..+|+-.++
T Consensus 563 ---Pks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~ 594 (941)
T KOG0351|consen 563 ---PKSFEGYYQEAGRAGRDGLPSSCVLLYGYADI 594 (941)
T ss_pred ---chhHHHHHHhccccCcCCCcceeEEecchhHH
Confidence 999999999999999999 6999999987766
No 85
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.67 E-value=1.8e-16 Score=158.83 Aligned_cols=221 Identities=20% Similarity=0.220 Sum_probs=155.9
Q ss_pred CCCeEEEchHHHHHHHhc-CCCCCCccEEEEecCCCCCcchHHHHHHHHHHH-hhCCCccEEEEccCCCHH--HHHhhhC
Q 008209 8 LLGGRYLTDGMLLREAMT-DPLLERYKVIVLDEAHERTLATDVLFGLLKEVL-KNRPDLKLVVMSATLEAE--KFQGYFY 83 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~-~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~-~~~~~~klvlmSATl~~~--~~~~~f~ 83 (574)
+.+|+++|||+++..... +-.|+.+.+||+||++ |-....+. ..+..++ +...+.|.++||||+.-. .|++-=.
T Consensus 140 npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad-rlfemgfq-eql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl 217 (529)
T KOG0337|consen 140 NPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD-RLFEMGFQ-EQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGL 217 (529)
T ss_pred CCCEEEecCceeeeeehheeccccceeeeeehhhh-HHHhhhhH-HHHHHHHHhCCCcceEEEEeccCchhhHHHHHccC
Confidence 578999999999886643 3469999999999999 22233222 2233333 355677999999999643 4443211
Q ss_pred CCC-eEE--eCCeeec-eeEEeecCCchhHHHHHHHHHHHHHhc-CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCC
Q 008209 84 GAP-LMK--VPGRLHP-VEIFYTQEPERDYLEAAIRTVVQIHMC-EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVG 158 (574)
Q Consensus 84 ~~~-~i~--~~gr~~~-v~~~y~~~~~~~~~~~~~~~~~~i~~~-~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~ 158 (574)
..| .+. ++.+..+ +++.|......+.. ..++.+... -...+.+||+++...++-+...|.. .
T Consensus 218 ~~p~lVRldvetkise~lk~~f~~~~~a~K~----aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~---------~ 284 (529)
T KOG0337|consen 218 VPPVLVRLDVETKISELLKVRFFRVRKAEKE----AALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRD---------F 284 (529)
T ss_pred CCCceEEeehhhhcchhhhhheeeeccHHHH----HHHHHHHhccccccceeEEecccchHHHHHHHHHh---------c
Confidence 223 222 2222222 22333322222222 233333321 1245899999999999999998876 4
Q ss_pred CeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeee
Q 008209 159 PVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP 238 (574)
Q Consensus 159 ~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~ 238 (574)
+..+-.+||.+.++.|..-+..|..++ ..+++.|++|++|++||...-|||+.+ |
T Consensus 285 g~~~s~iysslD~~aRk~~~~~F~~~k-------~~~lvvTdvaaRG~diplldnvinyd~------------------p 339 (529)
T KOG0337|consen 285 GGEGSDIYSSLDQEARKINGRDFRGRK-------TSILVVTDVAARGLDIPLLDNVINYDF------------------P 339 (529)
T ss_pred CCCccccccccChHhhhhccccccCCc-------cceEEEehhhhccCCCccccccccccC------------------C
Confidence 667788999999999998899999888 899999999999999999999999888 6
Q ss_pred ccHhhHHHhcccCCCCC-CCeEEeecccccc
Q 008209 239 ISKASAHQRSGRAGRTQ-PGKCFRLYTEKSF 268 (574)
Q Consensus 239 is~~~~~QR~GRaGR~~-~G~~~rl~t~~~~ 268 (574)
.+..-+.||.||+.|.+ .|..|.+....+.
T Consensus 340 ~~~klFvhRVgr~aragrtg~aYs~V~~~~~ 370 (529)
T KOG0337|consen 340 PDDKLFVHRVGRVARAGRTGRAYSLVASTDD 370 (529)
T ss_pred CCCceEEEEecchhhccccceEEEEEecccc
Confidence 66677889999999888 5999998765443
No 86
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.66 E-value=3.6e-16 Score=156.74 Aligned_cols=225 Identities=22% Similarity=0.254 Sum_probs=156.1
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCC--CCcchHHHHHHHHHHH---hhCCCccEEEEccCC---CHHHH
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHE--RTLATDVLFGLLKEVL---KNRPDLKLVVMSATL---EAEKF 78 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~He--R~~~~d~ll~~lk~~~---~~~~~~klvlmSATl---~~~~~ 78 (574)
+++|+++|||+|++.+...- .|+.+.++|+||++- -..+.|++.-+-.++- .....++.++.|||+ ++.++
T Consensus 339 g~~ivvGtpgRl~~~is~g~~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~ 418 (725)
T KOG0349|consen 339 GTHIVVGTPGRLLQPISKGLVTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKV 418 (725)
T ss_pred CceeeecCchhhhhhhhccceeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeeh
Confidence 68999999999999887755 589999999999982 2246677665544433 333468999999998 44444
Q ss_pred HhhhCCCCe-EEeCCe-eeceeEEe-----ecC-----------------C----------chhHHHHHHH------HHH
Q 008209 79 QGYFYGAPL-MKVPGR-LHPVEIFY-----TQE-----------------P----------ERDYLEAAIR------TVV 118 (574)
Q Consensus 79 ~~~f~~~~~-i~~~gr-~~~v~~~y-----~~~-----------------~----------~~~~~~~~~~------~~~ 118 (574)
.+-...-|. +...|. ..|-+++. .+. + ++.....++. .+.
T Consensus 419 ~ervmhfptwVdLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ 498 (725)
T KOG0349|consen 419 GERVMHFPTWVDLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVV 498 (725)
T ss_pred hhhhccCceeEecccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhh
Confidence 432211111 111110 01100000 000 0 0111111111 111
Q ss_pred HHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEe
Q 008209 119 QIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVS 198 (574)
Q Consensus 119 ~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kviva 198 (574)
.+ +...-.+.++||.|+.+++.+.+++.+.- ..++.++.+|+..-+.||.+-++.|+++. .|.++|
T Consensus 499 ai-~~h~mdkaiifcrtk~dcDnLer~~~qkg------g~~~scvclhgDrkP~Erk~nle~Fkk~d-------vkflic 564 (725)
T KOG0349|consen 499 AI-RRHAMDKAIIFCRTKQDCDNLERMMNQKG------GKHYSCVCLHGDRKPDERKANLESFKKFD-------VKFLIC 564 (725)
T ss_pred hh-hhhccCceEEEEeccccchHHHHHHHHcC------CccceeEEEecCCChhHHHHHHHhhhhcC-------eEEEEE
Confidence 12 12346789999999999999999987631 25788999999999999999999999888 999999
Q ss_pred cccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCC-CeEEeecc
Q 008209 199 TNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQP-GKCFRLYT 264 (574)
Q Consensus 199 T~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~-G~~~rl~t 264 (574)
|++|++|+||.++-|+||.-+ |-.+.+|.||.||+||... |..+.|..
T Consensus 565 tdvaargldi~g~p~~invtl------------------pd~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 565 TDVAARGLDITGLPFMINVTL------------------PDDKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred ehhhhccccccCCceEEEEec------------------CcccchhhhhhhccchhhhcceeEEEee
Confidence 999999999999999997655 7888899999999999886 88887754
No 87
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.65 E-value=1.4e-15 Score=166.24 Aligned_cols=164 Identities=18% Similarity=0.174 Sum_probs=117.7
Q ss_pred cEEEEccCCC--HHHHHhhhCCCCeEEeCCeeece--e-EEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHH
Q 008209 65 KLVVMSATLE--AEKFQGYFYGAPLMKVPGRLHPV--E-IFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEI 139 (574)
Q Consensus 65 klvlmSATl~--~~~~~~~f~~~~~i~~~gr~~~v--~-~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei 139 (574)
++-+||||.. .+.|.+.++ ..++.+|-..-.. . ..|......+.....+..+...+ ..+.++|||+++.+++
T Consensus 410 kl~GmTGTa~~~~~El~~~y~-l~vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~--~~~~pvLIft~t~~~s 486 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYG-LPVVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELH--AQGRPVLVGTRSVAAS 486 (656)
T ss_pred HHhcccCcChHHHHHHHHHHC-CCeEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHH
Confidence 7899999994 456777664 3455555422111 0 11111223444444444444433 2356799999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCC---CeE----
Q 008209 140 EDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTID---GIV---- 212 (574)
Q Consensus 140 ~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip---~v~---- 212 (574)
+.+++.|.+ .++.+..+||.....++..+..... . .+|+||||+|.+|+||+ +|.
T Consensus 487 e~L~~~L~~---------~gi~~~~Lhg~~~~rE~~ii~~ag~--~-------g~VlVATdmAgRGtDI~l~~~V~~~GG 548 (656)
T PRK12898 487 ERLSALLRE---------AGLPHQVLNAKQDAEEAAIVARAGQ--R-------GRITVATNMAGRGTDIKLEPGVAARGG 548 (656)
T ss_pred HHHHHHHHH---------CCCCEEEeeCCcHHHHHHHHHHcCC--C-------CcEEEEccchhcccCcCCccchhhcCC
Confidence 999999986 5688999999976655554443332 2 56999999999999999 776
Q ss_pred -EEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC-CCeEEeeccccc
Q 008209 213 -YVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ-PGKCFRLYTEKS 267 (574)
Q Consensus 213 -~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~-~G~~~rl~t~~~ 267 (574)
+||++.+ |.|...|.||+||+||.| ||.|+.+++.++
T Consensus 549 LhVI~~d~------------------P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 549 LHVILTER------------------HDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred CEEEEcCC------------------CCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 9998887 889999999999999999 699999988654
No 88
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.64 E-value=1e-14 Score=143.18 Aligned_cols=211 Identities=17% Similarity=0.257 Sum_probs=144.0
Q ss_pred CCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHH-HHHHhhCCCccEEEEccCCCHHHHHhhhC-CCC
Q 008209 9 LGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLL-KEVLKNRPDLKLVVMSATLEAEKFQGYFY-GAP 86 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~l-k~~~~~~~~~klvlmSATl~~~~~~~~f~-~~~ 86 (574)
.+++++|+--|+|.-. .++++||||||-.-...|-.|... +.. +.+.--+|.||||..-+.-.+-.. +..
T Consensus 186 ~plvVaTtHQLlrFk~------aFD~liIDEVDAFP~~~d~~L~~Av~~a--rk~~g~~IylTATp~k~l~r~~~~g~~~ 257 (441)
T COG4098 186 APLVVATTHQLLRFKQ------AFDLLIIDEVDAFPFSDDQSLQYAVKKA--RKKEGATIYLTATPTKKLERKILKGNLR 257 (441)
T ss_pred ccEEEEehHHHHHHHh------hccEEEEeccccccccCCHHHHHHHHHh--hcccCceEEEecCChHHHHHHhhhCCee
Confidence 7899999999999654 789999999997666667655543 332 334567899999986554444332 233
Q ss_pred eEEeCCeee----ceeEEeecCCchhH-----HHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCC
Q 008209 87 LMKVPGRLH----PVEIFYTQEPERDY-----LEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQV 157 (574)
Q Consensus 87 ~i~~~gr~~----~v~~~y~~~~~~~~-----~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~ 157 (574)
.+.+|.|.| ||.-+.-..+-..+ +...+...++-+. ..+.++|||+|+.+-.+.++..|++.+
T Consensus 258 ~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~-~~~~P~liF~p~I~~~eq~a~~lk~~~------- 329 (441)
T COG4098 258 ILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQR-KTGRPVLIFFPEIETMEQVAAALKKKL------- 329 (441)
T ss_pred EeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHH-hcCCcEEEEecchHHHHHHHHHHHhhC-------
Confidence 466665543 34322211111111 2223333333333 467899999999999999999997643
Q ss_pred CCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeee
Q 008209 158 GPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVS 237 (574)
Q Consensus 158 ~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~ 237 (574)
+...+...||.- ..|.+..+.|++|+ .+++++|.|+|+|+|+|+|.++| .+... .
T Consensus 330 ~~~~i~~Vhs~d--~~R~EkV~~fR~G~-------~~lLiTTTILERGVTfp~vdV~V---------lgaeh-------~ 384 (441)
T COG4098 330 PKETIASVHSED--QHRKEKVEAFRDGK-------ITLLITTTILERGVTFPNVDVFV---------LGAEH-------R 384 (441)
T ss_pred CccceeeeeccC--ccHHHHHHHHHcCc-------eEEEEEeehhhcccccccceEEE---------ecCCc-------c
Confidence 445667788773 34555667888888 99999999999999999999866 11111 1
Q ss_pred eccHhhHHHhcccCCCCC--C-CeEE
Q 008209 238 PISKASAHQRSGRAGRTQ--P-GKCF 260 (574)
Q Consensus 238 ~is~~~~~QR~GRaGR~~--~-G~~~ 260 (574)
--|.+..+|.+||+||.- | |..+
T Consensus 385 vfTesaLVQIaGRvGRs~~~PtGdv~ 410 (441)
T COG4098 385 VFTESALVQIAGRVGRSLERPTGDVL 410 (441)
T ss_pred cccHHHHHHHhhhccCCCcCCCCcEE
Confidence 368899999999999976 3 6543
No 89
>PRK09401 reverse gyrase; Reviewed
Probab=99.64 E-value=1.2e-15 Score=178.83 Aligned_cols=203 Identities=16% Similarity=0.144 Sum_probs=129.8
Q ss_pred CCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCC---CCcchHHHHHH-------HHHHHh------------------
Q 008209 8 LLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHE---RTLATDVLFGL-------LKEVLK------------------ 59 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~He---R~~~~d~ll~~-------lk~~~~------------------ 59 (574)
..+|+|+|||.|.+.+. .-.+.++++|||||||. .+-+.|-+|.+ +..++.
T Consensus 179 ~~~IlV~Tp~rL~~~~~-~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l 257 (1176)
T PRK09401 179 DFDILVTTSQFLSKNFD-ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIREL 257 (1176)
T ss_pred CCCEEEECHHHHHHHHH-hccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHH
Confidence 37999999999999876 22345699999999992 12222222111 111111
Q ss_pred -------hCCCccEEEEccCCCHHHHH-hhhCCCCeEEeCCee---eceeEEeecCCchhHHHHHHHHHHHHHhcCCCCC
Q 008209 60 -------NRPDLKLVVMSATLEAEKFQ-GYFYGAPLMKVPGRL---HPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGD 128 (574)
Q Consensus 60 -------~~~~~klvlmSATl~~~~~~-~~f~~~~~i~~~gr~---~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~ 128 (574)
...+.|++++|||+...... .+|.+.-.+.+.... ..+...|.... +... .+..+.. .-+++
T Consensus 258 ~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~~~rnI~~~yi~~~--~k~~----~L~~ll~-~l~~~ 330 (1176)
T PRK09401 258 EEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVGSPVFYLRNIVDSYIVDE--DSVE----KLVELVK-RLGDG 330 (1176)
T ss_pred HHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEecCcccccCCceEEEEEcc--cHHH----HHHHHHH-hcCCC
Confidence 01257899999999653222 223221123332221 23555555433 2222 2222222 12457
Q ss_pred EEEEcCCHHH---HHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEe----ccc
Q 008209 129 ILVFLTGEEE---IEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVS----TNI 201 (574)
Q Consensus 129 iLVFl~~~~e---i~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kviva----T~i 201 (574)
+|||+|++.. ++.+++.|.+ .++.+..+||++ + +.++.|.+|. .+|+|| ||+
T Consensus 331 ~LIFv~t~~~~~~ae~l~~~L~~---------~gi~v~~~hg~l----~-~~l~~F~~G~-------~~VLVatas~tdv 389 (1176)
T PRK09401 331 GLIFVPSDKGKEYAEELAEYLED---------LGINAELAISGF----E-RKFEKFEEGE-------VDVLVGVASYYGV 389 (1176)
T ss_pred EEEEEecccChHHHHHHHHHHHH---------CCCcEEEEeCcH----H-HHHHHHHCCC-------CCEEEEecCCCCc
Confidence 9999999777 9999999986 568899999999 2 2358899988 999999 699
Q ss_pred ccccccCCC-eEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccC
Q 008209 202 AETSLTIDG-IVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRA 251 (574)
Q Consensus 202 ae~gitip~-v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRa 251 (574)
|++|||+|+ |+|||++|..+.+.- --....+.+|.||+
T Consensus 390 ~aRGIDiP~~IryVI~y~vP~~~~~------------~~~~~~~~~~~~r~ 428 (1176)
T PRK09401 390 LVRGIDLPERIRYAIFYGVPKFKFS------------LEEELAPPFLLLRL 428 (1176)
T ss_pred eeecCCCCcceeEEEEeCCCCEEEe------------ccccccCHHHHHHH
Confidence 999999999 899999999664431 01224566777776
No 90
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.62 E-value=6.9e-15 Score=162.66 Aligned_cols=215 Identities=18% Similarity=0.229 Sum_probs=138.0
Q ss_pred CCeEEEchHHHHHHHhcC-------CCC--CCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCC---C--
Q 008209 9 LGGRYLTDGMLLREAMTD-------PLL--ERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL---E-- 74 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~l~~~-------~~L--~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl---~-- 74 (574)
.+|+++|..++....... ..+ ..+++||+||+|. .. .. ..++++..-.....+++|||+ |
T Consensus 344 ~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~-lp-A~----~fr~il~~l~a~~RLGLTATP~ReD~~ 417 (732)
T TIGR00603 344 AGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHV-VP-AA----MFRRVLTIVQAHCKLGLTATLVREDDK 417 (732)
T ss_pred CcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccc-cc-HH----HHHHHHHhcCcCcEEEEeecCcccCCc
Confidence 579999999886432111 123 4689999999994 22 22 223333322344679999999 2
Q ss_pred HHHHHhhhCCCCeEEe-------CCeeeceeE--EeecCCchh---HHH-----------------HHHHHHHHHHhcCC
Q 008209 75 AEKFQGYFYGAPLMKV-------PGRLHPVEI--FYTQEPERD---YLE-----------------AAIRTVVQIHMCEP 125 (574)
Q Consensus 75 ~~~~~~~f~~~~~i~~-------~gr~~~v~~--~y~~~~~~~---~~~-----------------~~~~~~~~i~~~~~ 125 (574)
...+..+++ +++... .|-.-|++. .+.+-.... |+. .++..++.-|. ..
T Consensus 418 ~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he-~~ 495 (732)
T TIGR00603 418 ITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHE-QR 495 (732)
T ss_pred hhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHh-hc
Confidence 223333443 344332 232223221 122221111 110 11222333333 35
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCC-CCCCCCCCcEEEEecccccc
Q 008209 126 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPP-SKEGGPPGRKIVVSTNIAET 204 (574)
Q Consensus 126 ~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g-~~~~~~~~~kvivaT~iae~ 204 (574)
+.++|||+.....++.+++.|. +..+||.+++.+|.++++.|+.| . .+++|+|+++.+
T Consensus 496 g~kiLVF~~~~~~l~~~a~~L~--------------~~~I~G~ts~~ER~~il~~Fr~~~~-------i~vLv~SkVgde 554 (732)
T TIGR00603 496 GDKIIVFSDNVFALKEYAIKLG--------------KPFIYGPTSQQERMQILQNFQHNPK-------VNTIFLSKVGDT 554 (732)
T ss_pred CCeEEEEeCCHHHHHHHHHHcC--------------CceEECCCCHHHHHHHHHHHHhCCC-------ccEEEEeccccc
Confidence 7899999999888777766652 23479999999999999999865 4 799999999999
Q ss_pred cccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCC-eE-------Eeeccccccc
Q 008209 205 SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPG-KC-------FRLYTEKSFN 269 (574)
Q Consensus 205 gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G-~~-------~rl~t~~~~~ 269 (574)
|||+|++++||.... . +-|..++.||.||++|.++| .+ |.|.+++..+
T Consensus 555 GIDlP~a~vvI~~s~--------~---------~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 555 SIDLPEANVLIQISS--------H---------YGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred ccCCCCCCEEEEeCC--------C---------CCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 999999999994321 1 24889999999999999974 43 8888876664
No 91
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.62 E-value=7.3e-15 Score=165.65 Aligned_cols=214 Identities=15% Similarity=0.188 Sum_probs=165.2
Q ss_pred CCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhh---CC
Q 008209 8 LLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYF---YG 84 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f---~~ 84 (574)
.-+|+|+|.-. |..|-.+.+++++||||-|..|+.----|.- .+.++-++-||||.=+..+.--+ .+
T Consensus 697 ~vDIvIGTHrL----L~kdv~FkdLGLlIIDEEqRFGVk~KEkLK~------Lr~~VDvLTLSATPIPRTL~Msm~GiRd 766 (1139)
T COG1197 697 KVDIVIGTHRL----LSKDVKFKDLGLLIIDEEQRFGVKHKEKLKE------LRANVDVLTLSATPIPRTLNMSLSGIRD 766 (1139)
T ss_pred CccEEEechHh----hCCCcEEecCCeEEEechhhcCccHHHHHHH------HhccCcEEEeeCCCCcchHHHHHhcchh
Confidence 36899999754 4566679999999999999866665332222 45689999999998655554322 24
Q ss_pred CCeEEeC-CeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEE
Q 008209 85 APLMKVP-GRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVV 163 (574)
Q Consensus 85 ~~~i~~~-gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~ 163 (574)
-.+|..| ...+||..+..+....-..+ ++..-+ ..+|++-.-.|-.++|+.+++.|++.. +...|.
T Consensus 767 lSvI~TPP~~R~pV~T~V~~~d~~~ire----AI~REl--~RgGQvfYv~NrV~~Ie~~~~~L~~LV-------PEarI~ 833 (1139)
T COG1197 767 LSVIATPPEDRLPVKTFVSEYDDLLIRE----AILREL--LRGGQVFYVHNRVESIEKKAERLRELV-------PEARIA 833 (1139)
T ss_pred hhhccCCCCCCcceEEEEecCChHHHHH----HHHHHH--hcCCEEEEEecchhhHHHHHHHHHHhC-------CceEEE
Confidence 4566554 56789999887754332222 222222 359999999999999999999998854 678899
Q ss_pred EcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhh
Q 008209 164 PLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKAS 243 (574)
Q Consensus 164 ~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~ 243 (574)
.-||+|+..+.+.++..|-+|. -.|+|||.|.|+|||||++..+| +.+.+ ..-.++
T Consensus 834 vaHGQM~e~eLE~vM~~F~~g~-------~dVLv~TTIIEtGIDIPnANTiI--------Ie~AD---------~fGLsQ 889 (1139)
T COG1197 834 VAHGQMRERELEEVMLDFYNGE-------YDVLVCTTIIETGIDIPNANTII--------IERAD---------KFGLAQ 889 (1139)
T ss_pred EeecCCCHHHHHHHHHHHHcCC-------CCEEEEeeeeecCcCCCCCceEE--------Eeccc---------cccHHH
Confidence 9999999999999999999998 99999999999999999999887 22222 234679
Q ss_pred HHHhcccCCCCCC-CeEEeecccccc
Q 008209 244 AHQRSGRAGRTQP-GKCFRLYTEKSF 268 (574)
Q Consensus 244 ~~QR~GRaGR~~~-G~~~rl~t~~~~ 268 (574)
..|-+||+||... |.||-+|.....
T Consensus 890 LyQLRGRVGRS~~~AYAYfl~p~~k~ 915 (1139)
T COG1197 890 LYQLRGRVGRSNKQAYAYFLYPPQKA 915 (1139)
T ss_pred HHHhccccCCccceEEEEEeecCccc
Confidence 9999999999985 999999986543
No 92
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.62 E-value=5.3e-15 Score=158.55 Aligned_cols=214 Identities=17% Similarity=0.223 Sum_probs=157.9
Q ss_pred CCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCC-CccEEEEccCCCHHHHH-hhhCCC
Q 008209 8 LLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRP-DLKLVVMSATLEAEKFQ-GYFYGA 85 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~-~~klvlmSATl~~~~~~-~~f~~~ 85 (574)
..+|+|+|.-.+ +.+-.+.++.+||+||=|..|+..-.. +..+.. ...+++||||.-+..++ ..|++.
T Consensus 365 ~~~ivVGTHALi----Qd~V~F~~LgLVIiDEQHRFGV~QR~~------L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDl 434 (677)
T COG1200 365 EIDIVVGTHALI----QDKVEFHNLGLVIIDEQHRFGVHQRLA------LREKGEQNPHVLVMTATPIPRTLALTAFGDL 434 (677)
T ss_pred CCCEEEEcchhh----hcceeecceeEEEEeccccccHHHHHH------HHHhCCCCCcEEEEeCCCchHHHHHHHhccc
Confidence 488999998743 334469999999999999866554322 223444 57899999999766665 455653
Q ss_pred CeE---EeCCeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHH--------HHHHHHHHHHhhcC
Q 008209 86 PLM---KVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIE--------DACRKITKEITNMG 154 (574)
Q Consensus 86 ~~i---~~~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~--------~~~~~L~~~~~~~~ 154 (574)
.+- +.|...-||.....+....+. .++.+.... ..+.++.|-||=.+|-+ ..++.|..
T Consensus 435 dvS~IdElP~GRkpI~T~~i~~~~~~~---v~e~i~~ei--~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~------ 503 (677)
T COG1200 435 DVSIIDELPPGRKPITTVVIPHERRPE---VYERIREEI--AKGRQAYVVCPLIEESEKLELQAAEELYEELKS------ 503 (677)
T ss_pred cchhhccCCCCCCceEEEEeccccHHH---HHHHHHHHH--HcCCEEEEEeccccccccchhhhHHHHHHHHHH------
Confidence 332 344444588888877544333 333333333 26889999999887665 33344432
Q ss_pred CCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCccee
Q 008209 155 DQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESL 234 (574)
Q Consensus 155 ~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l 234 (574)
..+..++.-+||.|+++|++.|++.|++|. .+|+|||.+.|.|||+|+.++.| .+|+++
T Consensus 504 -~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e-------~~ILVaTTVIEVGVdVPnATvMV--------Ie~AER----- 562 (677)
T COG1200 504 -FLPELKVGLVHGRMKPAEKDAVMEAFKEGE-------IDILVATTVIEVGVDVPNATVMV--------IENAER----- 562 (677)
T ss_pred -HcccceeEEEecCCChHHHHHHHHHHHcCC-------CcEEEEeeEEEecccCCCCeEEE--------Eechhh-----
Confidence 236788999999999999999999999998 99999999999999999999877 466654
Q ss_pred eeeeccHhhHHHhcccCCCCC-CCeEEeeccccc
Q 008209 235 LVSPISKASAHQRSGRAGRTQ-PGKCFRLYTEKS 267 (574)
Q Consensus 235 ~~~~is~~~~~QR~GRaGR~~-~G~~~rl~t~~~ 267 (574)
---++..|=+||+||.+ ++.|+.+|....
T Consensus 563 ----FGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 563 ----FGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred ----hhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 34689999999999988 599999987644
No 93
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.61 E-value=5.3e-15 Score=160.57 Aligned_cols=219 Identities=16% Similarity=0.190 Sum_probs=138.5
Q ss_pred CCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHH-------HHHHHHHHhhCCCccEEEEccCCCHHHHHhh
Q 008209 9 LGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVL-------FGLLKEVLKNRPDLKLVVMSATLEAEKFQGY 81 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~l-------l~~lk~~~~~~~~~klvlmSATl~~~~~~~~ 81 (574)
.+|+++|...+.. -+.++++|||||.|+-+...+-. ++.++ ....+.++|++|||...+.+...
T Consensus 77 ~~IVVGTrsalf~------p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~r---a~~~~~~vil~SATPsles~~~~ 147 (505)
T TIGR00595 77 ILVVIGTRSALFL------PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYR---AKKFNCPVVLGSATPSLESYHNA 147 (505)
T ss_pred CCEEECChHHHcC------cccCCCEEEEECCCccccccccCCCCcHHHHHHHH---HHhcCCCEEEEeCCCCHHHHHHH
Confidence 5799999986642 27789999999999533322111 12222 24468999999999998887765
Q ss_pred hCC-CCeEEeCC----eeec-eeEEeecCCc--hhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHH---------------
Q 008209 82 FYG-APLMKVPG----RLHP-VEIFYTQEPE--RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEE--------------- 138 (574)
Q Consensus 82 f~~-~~~i~~~g----r~~~-v~~~y~~~~~--~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~e--------------- 138 (574)
..+ ...+..+. +..| +++.-..... ...-...++.+.+.. ..++++|||+|.+.-
T Consensus 148 ~~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l--~~g~qvLvflnrrGya~~~~C~~Cg~~~~C 225 (505)
T TIGR00595 148 KQKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTL--AAGEQSILFLNRRGYSKNLLCRSCGYILCC 225 (505)
T ss_pred hcCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHH--HcCCcEEEEEeCCcCCCeeEhhhCcCccCC
Confidence 433 22333322 2223 2222111111 111122333343333 357899999887652
Q ss_pred ---------------------------------------------HHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHH
Q 008209 139 ---------------------------------------------IEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAM 173 (574)
Q Consensus 139 ---------------------------------------------i~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~ 173 (574)
++++.+.|.+. .++..+..+|+.++..+
T Consensus 226 ~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~-------fp~~~v~~~d~d~~~~~ 298 (505)
T TIGR00595 226 PNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKL-------FPGARIARIDSDTTSRK 298 (505)
T ss_pred CCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhh-------CCCCcEEEEecccccCc
Confidence 45556666543 25678999999988765
Q ss_pred H--hhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEE--cCCcccceeecCCCCcceeeeeeccHhhHHHhcc
Q 008209 174 Q--QKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVI--DPGFAKQKVYNPRVRVESLLVSPISKASAHQRSG 249 (574)
Q Consensus 174 q--~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VI--D~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~G 249 (574)
+ .++++.+.+|. .+|+|+|++++.|+|+|+|+.|+ |.+. ......+...--.-..+.|++|
T Consensus 299 ~~~~~~l~~f~~g~-------~~ILVgT~~i~kG~d~~~v~lV~vl~aD~--------~l~~pd~ra~E~~~~ll~q~~G 363 (505)
T TIGR00595 299 GAHEALLNQFANGK-------ADILIGTQMIAKGHHFPNVTLVGVLDADS--------GLHSPDFRAAERGFQLLTQVAG 363 (505)
T ss_pred cHHHHHHHHHhcCC-------CCEEEeCcccccCCCCCcccEEEEEcCcc--------cccCcccchHHHHHHHHHHHHh
Confidence 5 77889999888 89999999999999999999874 4432 0011011111224567999999
Q ss_pred cCCCCC-CCeEE
Q 008209 250 RAGRTQ-PGKCF 260 (574)
Q Consensus 250 RaGR~~-~G~~~ 260 (574)
||||.+ +|.++
T Consensus 364 RagR~~~~g~vi 375 (505)
T TIGR00595 364 RAGRAEDPGQVI 375 (505)
T ss_pred ccCCCCCCCEEE
Confidence 999966 58877
No 94
>PRK14701 reverse gyrase; Provisional
Probab=99.59 E-value=6.6e-15 Score=176.19 Aligned_cols=221 Identities=14% Similarity=0.083 Sum_probs=141.1
Q ss_pred CCeEEEchHHHHHHHhcCCCCCCccEEEEecCCC---CCcchHHHHH--------------HHH----------------
Q 008209 9 LGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHE---RTLATDVLFG--------------LLK---------------- 55 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~He---R~~~~d~ll~--------------~lk---------------- 55 (574)
.+|+|+|||.|.+.+..-. ..++++|||||||. .+-+.|-+|. +++
T Consensus 179 ~dILV~TPgrL~~~~~~l~-~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~ 257 (1638)
T PRK14701 179 FDILVTTAQFLARNFPEMK-HLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREI 257 (1638)
T ss_pred CCEEEECCchhHHhHHHHh-hCCCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhh
Confidence 6899999999988765322 26899999999993 1222222221 111
Q ss_pred --HHHhh-CCCcc-EEEEccCCCH-HHHHhhhCCCCeEEeCCeee---ceeEEeecCCchhHHHHHHHHHHHHHhcCCCC
Q 008209 56 --EVLKN-RPDLK-LVVMSATLEA-EKFQGYFYGAPLMKVPGRLH---PVEIFYTQEPERDYLEAAIRTVVQIHMCEPSG 127 (574)
Q Consensus 56 --~~~~~-~~~~k-lvlmSATl~~-~~~~~~f~~~~~i~~~gr~~---~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g 127 (574)
..+.. ....+ ++++|||+.. .....+|.+.-.+.+..... .+...|......+. . .+..+.... +.
T Consensus 258 l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~----~L~~ll~~~-g~ 331 (1638)
T PRK14701 258 LNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELLGFEVGSGRSALRNIVDVYLNPEKIIK-E----HVRELLKKL-GK 331 (1638)
T ss_pred hhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCeEEEecCCCCCCCCcEEEEEECCHHHH-H----HHHHHHHhC-CC
Confidence 11111 22334 5779999974 34445554433344433221 24455543322221 2 233333322 46
Q ss_pred CEEEEcCCHHHH---HHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEec----c
Q 008209 128 DILVFLTGEEEI---EDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVST----N 200 (574)
Q Consensus 128 ~iLVFl~~~~ei---~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT----~ 200 (574)
..||||++++.+ +.+++.|.+ .++.+.++||+ |..+++.|.+|. .+|+||| +
T Consensus 332 ~gIVF~~t~~~~e~ae~la~~L~~---------~Gi~a~~~h~~-----R~~~l~~F~~G~-------~~VLVaT~s~~g 390 (1638)
T PRK14701 332 GGLIFVPIDEGAEKAEEIEKYLLE---------DGFKIELVSAK-----NKKGFDLFEEGE-------IDYLIGVATYYG 390 (1638)
T ss_pred CeEEEEeccccchHHHHHHHHHHH---------CCCeEEEecch-----HHHHHHHHHcCC-------CCEEEEecCCCC
Confidence 799999998764 788888876 57899999995 778889999998 9999999 5
Q ss_pred cccccccCCC-eEEEEcCCccccee----ecCCCCcceeeeeeccHhhHHHhcccCCCCC-CCeEEeec
Q 008209 201 IAETSLTIDG-IVYVIDPGFAKQKV----YNPRVRVESLLVSPISKASAHQRSGRAGRTQ-PGKCFRLY 263 (574)
Q Consensus 201 iae~gitip~-v~~VID~g~~k~~~----y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~-~G~~~rl~ 263 (574)
+|++|||+|+ |+|||++|+.|.+. |...... + .. ..-..++.|||||.+ |+.|+..+
T Consensus 391 vaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~--~---~~-~~~~~~~~~~a~~~g~~~~~~~~~ 453 (1638)
T PRK14701 391 TLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYR--I---LG-LLSEILKIEEELKEGIPIEGVLDV 453 (1638)
T ss_pred eeEecCccCCccCEEEEeCCCCCCcchhhcccchhh--h---hc-chHHHHHhhhhcccCCcchhHHHh
Confidence 9999999999 99999999977442 3322211 0 00 234567789999998 56665333
No 95
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=2.1e-14 Score=160.37 Aligned_cols=162 Identities=22% Similarity=0.265 Sum_probs=123.5
Q ss_pred cEEEEccCCC--HHHHHhhhCCCCeEEeCCeeecee------EEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCH
Q 008209 65 KLVVMSATLE--AEKFQGYFYGAPLMKVPGRLHPVE------IFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGE 136 (574)
Q Consensus 65 klvlmSATl~--~~~~~~~f~~~~~i~~~gr~~~v~------~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~ 136 (574)
++.+||.|.. .+.|.+.+ +.+++.+|.. .|+. ..|. ...+...+.+..+...+ ..+.++|||++|.
T Consensus 365 kl~GmTGTa~t~~~e~~~~Y-~l~v~~IPt~-kp~~r~d~~~~i~~--~~~~K~~al~~~i~~~~--~~~~pvLIf~~t~ 438 (790)
T PRK09200 365 KLSGMTGTAKTEEKEFFEVY-NMEVVQIPTN-RPIIRIDYPDKVFV--TLDEKYKAVIEEVKERH--ETGRPVLIGTGSI 438 (790)
T ss_pred HHhccCCCChHHHHHHHHHh-CCcEEECCCC-CCcccccCCCeEEc--CHHHHHHHHHHHHHHHH--hcCCCEEEEeCcH
Confidence 6888888883 34555444 5677777653 2321 2222 22344455555554444 3578999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccC---CCeE-
Q 008209 137 EEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTI---DGIV- 212 (574)
Q Consensus 137 ~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~giti---p~v~- 212 (574)
+.++.+++.|.+ .++.+..+||.+...++..+...... .+|+||||+|.+|+|| |+|.
T Consensus 439 ~~se~l~~~L~~---------~gi~~~~L~~~~~~~e~~~i~~ag~~---------g~VlIATdmAgRG~DI~l~~~V~~ 500 (790)
T PRK09200 439 EQSETFSKLLDE---------AGIPHNLLNAKNAAKEAQIIAEAGQK---------GAVTVATNMAGRGTDIKLGEGVHE 500 (790)
T ss_pred HHHHHHHHHHHH---------CCCCEEEecCCccHHHHHHHHHcCCC---------CeEEEEccchhcCcCCCccccccc
Confidence 999999999986 46788999999988888777666543 4699999999999999 7999
Q ss_pred ----EEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC-CCeEEeecccccc
Q 008209 213 ----YVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ-PGKCFRLYTEKSF 268 (574)
Q Consensus 213 ----~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~-~G~~~rl~t~~~~ 268 (574)
+||++.+ |.|...|.||+|||||.| ||.++.+++.++.
T Consensus 501 ~GGL~VI~~d~------------------p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 501 LGGLAVIGTER------------------MESRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred ccCcEEEeccC------------------CCCHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 9998887 889999999999999999 6999999886554
No 96
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.57 E-value=7.5e-15 Score=147.37 Aligned_cols=225 Identities=17% Similarity=0.195 Sum_probs=152.2
Q ss_pred ccCCCeEEEchHHHHHH-----HhcCCCCCCccEEEEecCC-----CCCcchHHH-HHHHHHHHhhCCCccEEEEccCCC
Q 008209 6 CVLLGGRYLTDGMLLRE-----AMTDPLLERYKVIVLDEAH-----ERTLATDVL-FGLLKEVLKNRPDLKLVVMSATLE 74 (574)
Q Consensus 6 ~~~~~I~~~T~g~Ll~~-----l~~~~~L~~~~~vIiDE~H-----eR~~~~d~l-l~~lk~~~~~~~~~klvlmSATl~ 74 (574)
.|.+.++|.||.+.--. |+.--.-..++++|+||+| ..+..-|.| |+-|+. ..++..-|.++||.+
T Consensus 111 kp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS---~~~~vpwvALTATA~ 187 (641)
T KOG0352|consen 111 KPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRS---VCPGVPWVALTATAN 187 (641)
T ss_pred CCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHh---hCCCCceEEeecccC
Confidence 35678999999874221 1111122457899999999 233334543 555544 567899999999987
Q ss_pred HHHHHhhh----CCCCeEEeCCeeeceeEEeecCCchhHHHHHHHHHHHHH-------------hcCCCCCEEEEcCCHH
Q 008209 75 AEKFQGYF----YGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIH-------------MCEPSGDILVFLTGEE 137 (574)
Q Consensus 75 ~~~~~~~f----~~~~~i~~~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~-------------~~~~~g~iLVFl~~~~ 137 (574)
.+.=.+.| -..||-......|.-..+|...- .+.++..+..+.... ...-.|.-||+|.|++
T Consensus 188 ~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~-K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~ 266 (641)
T KOG0352|consen 188 AKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHM-KSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRN 266 (641)
T ss_pred hhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHH-HHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHH
Confidence 54333322 23344333333343334442110 111111111111111 0012578999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcC
Q 008209 138 EIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDP 217 (574)
Q Consensus 138 ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~ 217 (574)
++++++-.|.. .++....+|+||-..||..|-+.+-++. .-||+||+....|||-|+|++||+-
T Consensus 267 ~cEq~AI~l~~---------~Gi~A~AYHAGLK~~ERTeVQe~WM~~~-------~PvI~AT~SFGMGVDKp~VRFViHW 330 (641)
T KOG0352|consen 267 ECEQVAIMLEI---------AGIPAMAYHAGLKKKERTEVQEKWMNNE-------IPVIAATVSFGMGVDKPDVRFVIHW 330 (641)
T ss_pred HHHHHHHHhhh---------cCcchHHHhcccccchhHHHHHHHhcCC-------CCEEEEEeccccccCCcceeEEEec
Confidence 99999999975 6788999999999999999999999888 9999999999999999999999953
Q ss_pred CcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCC-CeEEeecccccc
Q 008209 218 GFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQP-GKCFRLYTEKSF 268 (574)
Q Consensus 218 g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~-G~~~rl~t~~~~ 268 (574)
.. +-+.+-|.|-.|||||.|. ..|-..|++++-
T Consensus 331 ~~------------------~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~ 364 (641)
T KOG0352|consen 331 SP------------------SQNLAGYYQESGRAGRDGKRSYCRLYYSRQDK 364 (641)
T ss_pred Cc------------------hhhhHHHHHhccccccCCCccceeeeecccch
Confidence 32 6788999999999999996 555555666554
No 97
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.57 E-value=1e-15 Score=164.96 Aligned_cols=349 Identities=8% Similarity=-0.103 Sum_probs=261.7
Q ss_pred eEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhhCCCCeEEe
Q 008209 11 GRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKV 90 (574)
Q Consensus 11 I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f~~~~~i~~ 90 (574)
+.++|+|.|++.+..+ ..+..+++.||.|+|+++||+++.+++.+ .++++|++|+++..|-.++-.++.+.+
T Consensus 503 herdv~~dfll~~lr~--m~~ty~dl~v~lmsatIdTd~f~~~f~~~------p~~~~~grt~pvq~F~led~~~~~~~v 574 (1282)
T KOG0921|consen 503 HERDVDTDFVLIVLRE--MISTYRDLRVVLMSATIDTDLFTNFFSSI------PDVTVHGRTFPVQSFFLEDIIQMTQFV 574 (1282)
T ss_pred hhhccchHHHHHHHHh--hhccchhhhhhhhhcccchhhhhhhhccc------cceeeccccccHHHHHHHHhhhhhhcc
Confidence 4689999999988765 45778899999999999999999988763 566999999999999887778888888
Q ss_pred CCeeeceeEE------------------------eec------------CCchhHHHHHHHHHH------HHHhcCCCCC
Q 008209 91 PGRLHPVEIF------------------------YTQ------------EPERDYLEAAIRTVV------QIHMCEPSGD 128 (574)
Q Consensus 91 ~gr~~~v~~~------------------------y~~------------~~~~~~~~~~~~~~~------~i~~~~~~g~ 128 (574)
+++.++++-+ |.. ...-...++....+. .+..-.+++.
T Consensus 575 p~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa 654 (1282)
T KOG0921|consen 575 PSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWA 654 (1282)
T ss_pred CCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchH
Confidence 8888775321 110 112333333322221 1222257999
Q ss_pred EEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccC
Q 008209 129 ILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTI 208 (574)
Q Consensus 129 iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~giti 208 (574)
+|+||+++--+......+++. .-++ .....+.+.|+.+...++..+++....+. ++++..|+.+++.|++
T Consensus 655 ~i~~L~~~ll~~~~fg~~~~y-~ilp--~Hsq~~~~eqrkvf~~~p~gv~kii~stn-------iaetsiTidd~v~vid 724 (1282)
T KOG0921|consen 655 EIMTLCNRLLEHQEFGQANKY-EILP--LHSQLTSQEQRKVFEPVPEGVTKIILSTN-------IAETSITIDDVVYVID 724 (1282)
T ss_pred Hhhhhhhhhhhhhhhccchhc-cccc--chhhcccHhhhhccCcccccccccccccc-------eeeEeeeecceeEEEe
Confidence 999999999888877777651 1111 24456889999999999999999999887 9999999999999999
Q ss_pred CCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEEeeccccccccccCCCCcchhccCCchhh
Q 008209 209 DGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANT 288 (574)
Q Consensus 209 p~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl~t~~~~~~~l~~~~~pei~~~~l~~~ 288 (574)
..+.+|++++-.+.+.+-....++...+.|.+.-.-.||.||++|.+.+.||.+.....+ ..|.-++.|||.++.....
T Consensus 725 ~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t-~em~r~plhemalTikll~ 803 (1282)
T KOG0921|consen 725 SCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGT-AEMFRTPLHEIALTIKLLR 803 (1282)
T ss_pred eeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHHhcCc-HhhhcCccHHHHhhHHHHH
Confidence 999999999999999988877788888889999999999999999999999999999988 6899999999998877666
Q ss_pred HHHHhhcCCCCcccc--CCCCCCcHHHHHHHHHHHHHcCCccCCC--CcChhhhhhccCCCCHHHHHHHHhccCCCCchh
Q 008209 289 VLTLKKLGIDDLVHF--DFMDPPAPETLMRALEVLNYLGALDDDG--NLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNE 364 (574)
Q Consensus 289 ~L~l~~~~~~~~~~~--~~l~~P~~~~l~~al~~L~~lgald~~~--~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~~~ 364 (574)
++.++.+-...+..+ +.+.+|+..... +..|...+-+...| .+|.+++.....|+.|..+++....+.+-..+-
T Consensus 804 l~SI~~fl~kal~~~p~dav~e~e~~l~~--m~~ld~n~elt~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~ 881 (1282)
T KOG0921|consen 804 LGSIGEFLGKALQPPPYDAVIEAEAVLRE--MGALDANDELTPLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAM 881 (1282)
T ss_pred hhhHHHHHhhccCCCchhhccCchHHHHH--hhhhhccCcccchhhhhhhccCcccccceeeechhhccchhhhhhhccc
Confidence 665554433333333 445666555444 44444444454455 478999999999999999998877655544444
Q ss_pred hHhHHhhccCCCcccC
Q 008209 365 ILSISAMLSVPNCFVR 380 (574)
Q Consensus 365 ~~~i~a~ls~~~~f~~ 380 (574)
...+++.--...+|..
T Consensus 882 s~~~~~~~~~~~~~rl 897 (1282)
T KOG0921|consen 882 SFPTPFVPREKHHSRL 897 (1282)
T ss_pred cccccccccccccccc
Confidence 4444444334444443
No 98
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.56 E-value=5.1e-14 Score=158.33 Aligned_cols=222 Identities=17% Similarity=0.188 Sum_probs=137.0
Q ss_pred CCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHH-HHH---HHHhhCCCccEEEEccCCCHHHHHhhhC-
Q 008209 9 LGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFG-LLK---EVLKNRPDLKLVVMSATLEAEKFQGYFY- 83 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~-~lk---~~~~~~~~~klvlmSATl~~~~~~~~f~- 83 (574)
.+|+++|++.+.. .+.++++|||||+|+-+...+--.. -.+ .......+.++|++|||...+.+.....
T Consensus 242 ~~IVVgTrsal~~------p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~~~~il~SATps~~s~~~~~~g 315 (679)
T PRK05580 242 AKVVIGARSALFL------PFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLENIPVVLGSATPSLESLANAQQG 315 (679)
T ss_pred CCEEEeccHHhcc------cccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhccCCCEEEEcCCCCHHHHHHHhcc
Confidence 6899999987641 3688999999999954433221000 011 1112446899999999999887766432
Q ss_pred CCCeEEeCCee----ec-eeEEeecCCc-----hhHHHHHHHHHHHHHhcCCCCCEEEEcCCHH----------------
Q 008209 84 GAPLMKVPGRL----HP-VEIFYTQEPE-----RDYLEAAIRTVVQIHMCEPSGDILVFLTGEE---------------- 137 (574)
Q Consensus 84 ~~~~i~~~gr~----~~-v~~~y~~~~~-----~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~---------------- 137 (574)
....+..+.+. .| +.+.-..... .......++.+.+.. +.+.++|||+|.+.
T Consensus 316 ~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l--~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C 393 (679)
T PRK05580 316 RYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRL--ERGEQVLLFLNRRGYAPFLLCRDCGWVAEC 393 (679)
T ss_pred ceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHH--HcCCeEEEEEcCCCCCCceEhhhCcCccCC
Confidence 23344444442 22 2222111100 001122223333222 34668999988632
Q ss_pred --------------------------------------------HHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCC--H
Q 008209 138 --------------------------------------------EIEDACRKITKEITNMGDQVGPVKVVPLYSTLP--P 171 (574)
Q Consensus 138 --------------------------------------------ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~--~ 171 (574)
.++++.+.|.+. .++..+..+|+.+. .
T Consensus 394 ~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~-------fp~~~v~~~~~d~~~~~ 466 (679)
T PRK05580 394 PHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAEL-------FPEARILRIDRDTTRRK 466 (679)
T ss_pred CCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHh-------CCCCcEEEEeccccccc
Confidence 334445555442 24677899999986 4
Q ss_pred HHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEE--cCCcc-cceeecCCCCcceeeeeeccHhhHHHhc
Q 008209 172 AMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVI--DPGFA-KQKVYNPRVRVESLLVSPISKASAHQRS 248 (574)
Q Consensus 172 ~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VI--D~g~~-k~~~y~~~~~~~~l~~~~is~~~~~QR~ 248 (574)
++++++++.|.+|. ..|+|+|+++++|+|+|+|++|+ |.+.. ..+.|+ ..--.-..+.|++
T Consensus 467 ~~~~~~l~~f~~g~-------~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfr---------a~Er~~~~l~q~~ 530 (679)
T PRK05580 467 GALEQLLAQFARGE-------ADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFR---------ASERTFQLLTQVA 530 (679)
T ss_pred hhHHHHHHHHhcCC-------CCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccc---------hHHHHHHHHHHHH
Confidence 56888999999988 89999999999999999999884 44321 011111 1122356899999
Q ss_pred ccCCCCC-CCeEEe
Q 008209 249 GRAGRTQ-PGKCFR 261 (574)
Q Consensus 249 GRaGR~~-~G~~~r 261 (574)
|||||.+ +|.++-
T Consensus 531 GRagR~~~~g~vii 544 (679)
T PRK05580 531 GRAGRAEKPGEVLI 544 (679)
T ss_pred hhccCCCCCCEEEE
Confidence 9999965 588874
No 99
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.55 E-value=5.5e-14 Score=165.06 Aligned_cols=188 Identities=19% Similarity=0.203 Sum_probs=122.3
Q ss_pred CCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCC---CcchHHHHHH-------HHH---------------------
Q 008209 8 LLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHER---TLATDVLFGL-------LKE--------------------- 56 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR---~~~~d~ll~~-------lk~--------------------- 56 (574)
+.+|+|+|||.|.+.+..-. .+++++||||||.- +-+.|-+|.+ +..
T Consensus 178 ~~dIlV~Tp~rL~~~~~~l~--~~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~ 255 (1171)
T TIGR01054 178 DFDILITTTMFLSKNYDELG--PKFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRL 255 (1171)
T ss_pred CCCEEEECHHHHHHHHHHhc--CCCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHH
Confidence 37899999999998775422 18999999999921 1112222111 111
Q ss_pred -HHh-hCCCcc--EEEEccCCCHHHHH-hhhCCCCeEEeCCee---eceeEEeecCCchhHHHHHHHHHHHHHhcCCCCC
Q 008209 57 -VLK-NRPDLK--LVVMSATLEAEKFQ-GYFYGAPLMKVPGRL---HPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGD 128 (574)
Q Consensus 57 -~~~-~~~~~k--lvlmSATl~~~~~~-~~f~~~~~i~~~gr~---~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~ 128 (574)
.+. ...+.| ++++|||....... .+|...-.+.+.... ..+...|..... ... .+..+... -+++
T Consensus 256 ~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~v~~~~~~~r~I~~~~~~~~~--~~~----~L~~ll~~-l~~~ 328 (1171)
T TIGR01054 256 ELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFEVGGGSDTLRNVVDVYVEDED--LKE----TLLEIVKK-LGTG 328 (1171)
T ss_pred HHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceEecCccccccceEEEEEeccc--HHH----HHHHHHHH-cCCC
Confidence 111 112333 67789995322222 334332224443322 235555654332 111 22233222 2467
Q ss_pred EEEEcCCH---HHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEe----ccc
Q 008209 129 ILVFLTGE---EEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVS----TNI 201 (574)
Q Consensus 129 iLVFl~~~---~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kviva----T~i 201 (574)
.|||++++ +.++++++.|.+ .++.+..+||+++. .+++.|.+|. .+|+|| ||+
T Consensus 329 ~IVFv~t~~~~~~a~~l~~~L~~---------~g~~a~~lhg~~~~----~~l~~Fr~G~-------~~vLVata~~tdv 388 (1171)
T TIGR01054 329 GIVYVSIDYGKEKAEEIAEFLEN---------HGVKAVAYHATKPK----EDYEKFAEGE-------IDVLIGVASYYGT 388 (1171)
T ss_pred EEEEEeccccHHHHHHHHHHHHh---------CCceEEEEeCCCCH----HHHHHHHcCC-------CCEEEEeccccCc
Confidence 99999999 999999999976 46889999999973 5789999998 999999 599
Q ss_pred ccccccCCC-eEEEEcCCccccee
Q 008209 202 AETSLTIDG-IVYVIDPGFAKQKV 224 (574)
Q Consensus 202 ae~gitip~-v~~VID~g~~k~~~ 224 (574)
+++|||||+ |+|||++|..+.+.
T Consensus 389 ~aRGIDip~~V~~vI~~~~P~~~~ 412 (1171)
T TIGR01054 389 LVRGLDLPERVRYAVFLGVPKFKV 412 (1171)
T ss_pred ccccCCCCccccEEEEECCCCEEE
Confidence 999999999 89999999987654
No 100
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.54 E-value=6.9e-14 Score=154.87 Aligned_cols=161 Identities=21% Similarity=0.263 Sum_probs=120.1
Q ss_pred cEEEEccCCC--HHHHHhhhCCCCeEEeCCeeece------eEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCH
Q 008209 65 KLVVMSATLE--AEKFQGYFYGAPLMKVPGRLHPV------EIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGE 136 (574)
Q Consensus 65 klvlmSATl~--~~~~~~~f~~~~~i~~~gr~~~v------~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~ 136 (574)
|+-+|+.|.. .+.|.+.+ +.+++.+|... |+ +..|.. ..+...+.+..+.+.+ ..+.++|||+++.
T Consensus 361 kl~GmTGTa~~~~~Ef~~iY-~l~v~~IPt~k-p~~r~d~~d~i~~~--~~~K~~ai~~~i~~~~--~~~~pvLIft~s~ 434 (762)
T TIGR03714 361 KLSGMTGTGKVAEKEFIETY-SLSVVKIPTNK-PIIRIDYPDKIYAT--LPEKLMATLEDVKEYH--ETGQPVLLITGSV 434 (762)
T ss_pred hhcccCCCChhHHHHHHHHh-CCCEEEcCCCC-CeeeeeCCCeEEEC--HHHHHHHHHHHHHHHh--hCCCCEEEEECcH
Confidence 7888999973 45665554 46777776532 22 122322 2344555555555554 3578999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCC-------
Q 008209 137 EEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTID------- 209 (574)
Q Consensus 137 ~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip------- 209 (574)
+.++.+.+.|.+ .++.+..+||.+.+.++..+.+.+.. .+|+||||+|.+|+|||
T Consensus 435 ~~se~ls~~L~~---------~gi~~~~L~a~~~~~E~~ii~~ag~~---------g~VlIATdmAgRGtDI~l~~~v~~ 496 (762)
T TIGR03714 435 EMSEIYSELLLR---------EGIPHNLLNAQNAAKEAQIIAEAGQK---------GAVTVATSMAGRGTDIKLGKGVAE 496 (762)
T ss_pred HHHHHHHHHHHH---------CCCCEEEecCCChHHHHHHHHHcCCC---------CeEEEEccccccccCCCCCccccc
Confidence 999999999986 46778899999999888777776654 36999999999999999
Q ss_pred --CeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC-CCeEEeecccccc
Q 008209 210 --GIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ-PGKCFRLYTEKSF 268 (574)
Q Consensus 210 --~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~-~G~~~rl~t~~~~ 268 (574)
++.+||++.. |..+.+ .||+|||||.| ||.++.+.+.++.
T Consensus 497 ~GGL~vIit~~~------------------ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 497 LGGLAVIGTERM------------------ENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred cCCeEEEEecCC------------------CCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 9999996554 444445 99999999999 6999999887554
No 101
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.53 E-value=1.4e-13 Score=151.65 Aligned_cols=162 Identities=22% Similarity=0.267 Sum_probs=124.8
Q ss_pred cEEEEccCCC--HHHHHhhhCCCCeEEeCCeeece------eEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCH
Q 008209 65 KLVVMSATLE--AEKFQGYFYGAPLMKVPGRLHPV------EIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGE 136 (574)
Q Consensus 65 klvlmSATl~--~~~~~~~f~~~~~i~~~gr~~~v------~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~ 136 (574)
++-+||.|.. .+.|.+.+ +.+++.+|.-. |+ +..|.. ..+.+.+.+..+...|. .+.++|||+++.
T Consensus 342 kl~GmTGTa~te~~E~~~iY-~l~vv~IPtnk-p~~R~d~~d~i~~t--~~~k~~ai~~~i~~~~~--~grpvLV~t~si 415 (745)
T TIGR00963 342 KLSGMTGTAKTEEEEFEKIY-NLEVVVVPTNR-PVIRKDLSDLVYKT--EEEKWKAVVDEIKERHA--KGQPVLVGTTSV 415 (745)
T ss_pred hhhccCCCcHHHHHHHHHHh-CCCEEEeCCCC-CeeeeeCCCeEEcC--HHHHHHHHHHHHHHHHh--cCCCEEEEeCcH
Confidence 7888999983 45565555 46777776532 21 122322 23455666666766664 588999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCC------
Q 008209 137 EEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDG------ 210 (574)
Q Consensus 137 ~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~------ 210 (574)
+.++.+.+.|.+ .++....+|+. +.+|+..+..+..+. -.|+||||+|.||+||+.
T Consensus 416 ~~se~ls~~L~~---------~gi~~~~Lna~--q~~rEa~ii~~ag~~-------g~VtIATnmAgRGtDI~l~~V~~~ 477 (745)
T TIGR00963 416 EKSELLSNLLKE---------RGIPHNVLNAK--NHEREAEIIAQAGRK-------GAVTIATNMAGRGTDIKLEEVKEL 477 (745)
T ss_pred HHHHHHHHHHHH---------cCCCeEEeeCC--hHHHHHHHHHhcCCC-------ceEEEEeccccCCcCCCccchhhc
Confidence 999999999987 45677889998 677777777777666 899999999999999998
Q ss_pred -eEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC-CCeEEeecccccc
Q 008209 211 -IVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ-PGKCFRLYTEKSF 268 (574)
Q Consensus 211 -v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~-~G~~~rl~t~~~~ 268 (574)
..+||.+.+ |-|...+.||.||+||.| ||.+..+.+.++.
T Consensus 478 GGl~VI~t~~------------------p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 478 GGLYVIGTER------------------HESRRIDNQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred CCcEEEecCC------------------CCcHHHHHHHhccccCCCCCcceEEEEeccHH
Confidence 459998776 889999999999999999 6999888876654
No 102
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.52 E-value=1.1e-13 Score=154.07 Aligned_cols=115 Identities=19% Similarity=0.120 Sum_probs=99.3
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccccc
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAE 203 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae 203 (574)
..+.++|||+++++.++.+++.|.+ .++.+..+||+++..+|.++++.++.|. ..|+|||++++
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~---------~gi~~~~lh~~~~~~eR~~~l~~fr~G~-------i~VLV~t~~L~ 503 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKE---------LGIKVRYLHSEIDTLERVEIIRDLRLGE-------FDVLVGINLLR 503 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhh---------hccceeeeeCCCCHHHHHHHHHHHhcCC-------ceEEEEcChhc
Confidence 4578899999999999999999986 4578899999999999999999999988 99999999999
Q ss_pred ccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEEeeccccc
Q 008209 204 TSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKS 267 (574)
Q Consensus 204 ~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl~t~~~ 267 (574)
+|+++|++++||.++- ... ..|-|..+|+||+|||||..+|.++.+.+...
T Consensus 504 rGfDiP~v~lVvi~Da--------dif-----G~p~~~~~~iqriGRagR~~~G~vi~~~~~~~ 554 (655)
T TIGR00631 504 EGLDLPEVSLVAILDA--------DKE-----GFLRSERSLIQTIGRAARNVNGKVIMYADKIT 554 (655)
T ss_pred CCeeeCCCcEEEEeCc--------ccc-----cCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCC
Confidence 9999999999985441 111 12778899999999999999999988877543
No 103
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.49 E-value=1.6e-13 Score=121.76 Aligned_cols=103 Identities=21% Similarity=0.365 Sum_probs=92.7
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccc
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 204 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~ 204 (574)
+++++|||+++...++.+++.|.+ ....+..+||+++..++..+++.+..+. .+|+++|+.++.
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~f~~~~-------~~ili~t~~~~~ 90 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRK---------PGIKVAALHGDGSQEEREEVLKDFREGE-------IVVLVATDVIAR 90 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHh---------cCCcEEEEECCCCHHHHHHHHHHHHcCC-------CcEEEEcChhhc
Confidence 578999999999999999999976 4567999999999999999999998887 899999999999
Q ss_pred cccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC-CCeEEe
Q 008209 205 SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ-PGKCFR 261 (574)
Q Consensus 205 gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~-~G~~~r 261 (574)
|+|+|++++||-.+. |.+..++.|+.||+||.+ .|.|+.
T Consensus 91 G~d~~~~~~vi~~~~------------------~~~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 91 GIDLPNVSVVINYDL------------------PWSPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred CcChhhCCEEEEeCC------------------CCCHHHheecccccccCCCCceEEe
Confidence 999999999996554 788899999999999999 577764
No 104
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.47 E-value=5.3e-13 Score=149.48 Aligned_cols=113 Identities=20% Similarity=0.136 Sum_probs=98.8
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccccc
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAE 203 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae 203 (574)
..+.++|||+++++.++.+++.|.+ .++.+..+||+++..+|..+++.++.|. ..|+|||++++
T Consensus 444 ~~g~~viIf~~t~~~ae~L~~~L~~---------~gi~~~~~h~~~~~~~R~~~l~~f~~g~-------i~vlV~t~~L~ 507 (652)
T PRK05298 444 AKGERVLVTTLTKRMAEDLTDYLKE---------LGIKVRYLHSDIDTLERVEIIRDLRLGE-------FDVLVGINLLR 507 (652)
T ss_pred hCCCEEEEEeCCHHHHHHHHHHHhh---------cceeEEEEECCCCHHHHHHHHHHHHcCC-------ceEEEEeCHHh
Confidence 3578899999999999999999976 5688999999999999999999999888 89999999999
Q ss_pred ccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEEeeccc
Q 008209 204 TSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTE 265 (574)
Q Consensus 204 ~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl~t~ 265 (574)
+|+++|++++||.++.. ..| -|.+..+|+||+|||||...|.|+.+.+.
T Consensus 508 rGfdlp~v~lVii~d~e-------ifG------~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 508 EGLDIPEVSLVAILDAD-------KEG------FLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred CCccccCCcEEEEeCCc-------ccc------cCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 99999999999965531 111 16788899999999999988999988874
No 105
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.47 E-value=5.3e-13 Score=148.25 Aligned_cols=161 Identities=20% Similarity=0.297 Sum_probs=122.7
Q ss_pred cEEEEccCCC--HHHHHhhhCCCCeEEeCCeeecee------EEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCH
Q 008209 65 KLVVMSATLE--AEKFQGYFYGAPLMKVPGRLHPVE------IFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGE 136 (574)
Q Consensus 65 klvlmSATl~--~~~~~~~f~~~~~i~~~gr~~~v~------~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~ 136 (574)
|+-+||.|.. .+.|.+.+ +.+++.+|.. .|+. ..|. .......+.+..+...| ..+.+||||+++.
T Consensus 377 kl~GmTGTa~~e~~Ef~~iY-~l~vv~IPtn-kp~~r~d~~d~i~~--t~~~K~~al~~~i~~~~--~~g~pvLI~t~si 450 (796)
T PRK12906 377 KLSGMTGTAKTEEEEFREIY-NMEVITIPTN-RPVIRKDSPDLLYP--TLDSKFNAVVKEIKERH--AKGQPVLVGTVAI 450 (796)
T ss_pred hhhccCCCCHHHHHHHHHHh-CCCEEEcCCC-CCeeeeeCCCeEEc--CHHHHHHHHHHHHHHHH--hCCCCEEEEeCcH
Confidence 6888888883 45555544 4677777763 2322 1222 22345555555565555 3688999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccC---CCeE-
Q 008209 137 EEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTI---DGIV- 212 (574)
Q Consensus 137 ~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~giti---p~v~- 212 (574)
...+.+++.|.+ .++....||+.....|+..+-+...+| .|.||||+|.||.|| ++|.
T Consensus 451 ~~se~ls~~L~~---------~gi~~~~Lna~~~~~Ea~ii~~ag~~g---------~VtIATnmAGRGtDI~l~~~V~~ 512 (796)
T PRK12906 451 ESSERLSHLLDE---------AGIPHAVLNAKNHAKEAEIIMNAGQRG---------AVTIATNMAGRGTDIKLGPGVKE 512 (796)
T ss_pred HHHHHHHHHHHH---------CCCCeeEecCCcHHHHHHHHHhcCCCc---------eEEEEeccccCCCCCCCCcchhh
Confidence 999999999987 456778999999888877777766654 599999999999999 5899
Q ss_pred ----EEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC-CCeEEeeccccc
Q 008209 213 ----YVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ-PGKCFRLYTEKS 267 (574)
Q Consensus 213 ----~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~-~G~~~rl~t~~~ 267 (574)
+||.+.+ |-|...+.||.|||||.| ||.+..+.+.++
T Consensus 513 ~GGLhVI~te~------------------pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 513 LGGLAVIGTER------------------HESRRIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred hCCcEEEeeec------------------CCcHHHHHHHhhhhccCCCCcceEEEEeccc
Confidence 9997776 889999999999999999 699988877664
No 106
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.47 E-value=8.5e-13 Score=130.72 Aligned_cols=218 Identities=17% Similarity=0.232 Sum_probs=150.5
Q ss_pred CCeEEEchHHHHH------HHhcCCCCCCccEEEEecCC-----CCCcchHH-HHHHHHHHHhhCCCccEEEEccCCCHH
Q 008209 9 LGGRYLTDGMLLR------EAMTDPLLERYKVIVLDEAH-----ERTLATDV-LFGLLKEVLKNRPDLKLVVMSATLEAE 76 (574)
Q Consensus 9 ~~I~~~T~g~Ll~------~l~~~~~L~~~~~vIiDE~H-----eR~~~~d~-ll~~lk~~~~~~~~~klvlmSATl~~~ 76 (574)
-.++|+||.-+.. .|...-....+..|-|||+| ..+...|. .|++||+ ..++..+|.++||...+
T Consensus 187 ~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkr---qf~~~~iigltatatn~ 263 (695)
T KOG0353|consen 187 FKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKR---QFKGAPIIGLTATATNH 263 (695)
T ss_pred eEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHH---hCCCCceeeeehhhhcc
Confidence 4589999987644 22222245678999999999 33344553 4677766 67889999999997432
Q ss_pred HH---HhhhCCCCeEE-eCCeeec---eeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHH
Q 008209 77 KF---QGYFYGAPLMK-VPGRLHP---VEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKE 149 (574)
Q Consensus 77 ~~---~~~f~~~~~i~-~~gr~~~---v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~ 149 (574)
.+ .+.+.-...+. -.|-..| .++.-.|..+++..+.....+.. ...+..-+|+|-++.+++.++..|..
T Consensus 264 vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~---~f~gqsgiiyc~sq~d~ekva~alkn- 339 (695)
T KOG0353|consen 264 VLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKG---DFAGQSGIIYCFSQKDCEKVAKALKN- 339 (695)
T ss_pred hhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhcc---ccCCCcceEEEeccccHHHHHHHHHh-
Confidence 22 22221000011 1111111 22223344445555543333221 12355678899999999999999986
Q ss_pred HhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCC
Q 008209 150 ITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRV 229 (574)
Q Consensus 150 ~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~ 229 (574)
.++....+|+.|.++++..+-+.+..|. ..|||||-....|||-|+|++||+-.+
T Consensus 340 --------~gi~a~~yha~lep~dks~~hq~w~a~e-------iqvivatvafgmgidkpdvrfvihhsl---------- 394 (695)
T KOG0353|consen 340 --------HGIHAGAYHANLEPEDKSGAHQGWIAGE-------IQVIVATVAFGMGIDKPDVRFVIHHSL---------- 394 (695)
T ss_pred --------cCccccccccccCccccccccccccccc-------eEEEEEEeeecccCCCCCeeEEEeccc----------
Confidence 5777889999999999999999999988 999999999999999999999998766
Q ss_pred CcceeeeeeccHhhHHH-------------------------------------------hcccCCCCC-CCeEEeeccc
Q 008209 230 RVESLLVSPISKASAHQ-------------------------------------------RSGRAGRTQ-PGKCFRLYTE 265 (574)
Q Consensus 230 ~~~~l~~~~is~~~~~Q-------------------------------------------R~GRaGR~~-~G~~~rl~t~ 265 (574)
|-|.++|.| -.|||||.+ +..|+..|.-
T Consensus 395 --------~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~ 466 (695)
T KOG0353|consen 395 --------PKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGF 466 (695)
T ss_pred --------chhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEech
Confidence 677777777 789999987 5778776654
Q ss_pred c
Q 008209 266 K 266 (574)
Q Consensus 266 ~ 266 (574)
.
T Consensus 467 ~ 467 (695)
T KOG0353|consen 467 A 467 (695)
T ss_pred H
Confidence 3
No 107
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.46 E-value=2.8e-12 Score=149.91 Aligned_cols=228 Identities=20% Similarity=0.277 Sum_probs=142.3
Q ss_pred CCCeEEEchHHHHHHHhcC------CCCCCccEEEEecCCCCCcchHH--------------HHHHHHHHHhhCCCccEE
Q 008209 8 LLGGRYLTDGMLLREAMTD------PLLERYKVIVLDEAHERTLATDV--------------LFGLLKEVLKNRPDLKLV 67 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~------~~L~~~~~vIiDE~HeR~~~~d~--------------ll~~lk~~~~~~~~~klv 67 (574)
..+|+|+|...|.+.+... +.+..+++||+||+| |+...|- .....+.++.. .+..+|
T Consensus 511 ~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaH-Rs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~y-FdA~~I 588 (1123)
T PRK11448 511 ETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAH-RGYTLDKEMSEGELQFRDQLDYVSKYRRVLDY-FDAVKI 588 (1123)
T ss_pred CCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCC-CCCccccccccchhccchhhhHHHHHHHHHhh-cCccEE
Confidence 4789999998888776421 357889999999999 6753221 12344555543 356789
Q ss_pred EEccCCCHHHHHhhhCCCCeEEe-------CCeee----ceeE---------EeecC-----------------Cch--h
Q 008209 68 VMSATLEAEKFQGYFYGAPLMKV-------PGRLH----PVEI---------FYTQE-----------------PER--D 108 (574)
Q Consensus 68 lmSATl~~~~~~~~f~~~~~i~~-------~gr~~----~v~~---------~y~~~-----------------~~~--~ 108 (574)
+|+||+... ..++|+. |+... +|-.. |+.+ .|... ... +
T Consensus 589 GLTATP~r~-t~~~FG~-pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~ 666 (1123)
T PRK11448 589 GLTATPALH-TTEIFGE-PVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVD 666 (1123)
T ss_pred EEecCCccc-hhHHhCC-eeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCcHHHh
Confidence 999999643 2456653 33211 12111 1110 01000 000 0
Q ss_pred H--------------HHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHH
Q 008209 109 Y--------------LEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQ 174 (574)
Q Consensus 109 ~--------------~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q 174 (574)
+ ....+..+.+......+++.||||.+++.++.+++.|.+.............+..++|..+. +
T Consensus 667 ~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~~--~ 744 (1123)
T PRK11448 667 FEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSIDK--P 744 (1123)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCccc--h
Confidence 0 00111222222222335899999999999999999998755332111223345668888753 4
Q ss_pred hhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCC
Q 008209 175 QKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT 254 (574)
Q Consensus 175 ~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~ 254 (574)
..+++.|+++. ..+|+|+++++.||+|+|.|.+||-.- .+-|+..|.||.||+.|.
T Consensus 745 ~~li~~Fk~~~------~p~IlVsvdmL~TG~DvP~v~~vVf~r------------------pvkS~~lf~QmIGRgtR~ 800 (1123)
T PRK11448 745 DQLIRRFKNER------LPNIVVTVDLLTTGIDVPSICNLVFLR------------------RVRSRILYEQMLGRATRL 800 (1123)
T ss_pred HHHHHHHhCCC------CCeEEEEecccccCCCcccccEEEEec------------------CCCCHHHHHHHHhhhccC
Confidence 56778887654 138999999999999999999999322 257899999999999999
Q ss_pred CC--Ce-EEeeccc
Q 008209 255 QP--GK-CFRLYTE 265 (574)
Q Consensus 255 ~~--G~-~~rl~t~ 265 (574)
.| |+ ++.++.-
T Consensus 801 ~~~~~K~~f~I~D~ 814 (1123)
T PRK11448 801 CPEIGKTHFRIFDA 814 (1123)
T ss_pred CccCCCceEEEEeh
Confidence 88 43 4555443
No 108
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.44 E-value=5.3e-13 Score=151.54 Aligned_cols=193 Identities=22% Similarity=0.268 Sum_probs=123.7
Q ss_pred CccEEEEecCCCCCcc--hHHHHHHHHHHHhhCCCccEEEEccCCCH---HHHHhhhCCCCeEEeCCeeeceeEEe-ecC
Q 008209 31 RYKVIVLDEAHERTLA--TDVLFGLLKEVLKNRPDLKLVVMSATLEA---EKFQGYFYGAPLMKVPGRLHPVEIFY-TQE 104 (574)
Q Consensus 31 ~~~~vIiDE~HeR~~~--~d~ll~~lk~~~~~~~~~klvlmSATl~~---~~~~~~f~~~~~i~~~gr~~~v~~~y-~~~ 104 (574)
..+.+|+||+|--.-+ .-++++.+..+ ..-+.++|+||||++. +.|.++++....+.......|....+ ...
T Consensus 338 ~~S~vIlDE~h~~~~~~~~~~l~~~i~~l--~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~ 415 (733)
T COG1203 338 LTSLVILDEVHLYADETMLAALLALLEAL--AEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKR 415 (733)
T ss_pred HhhchhhccHHhhcccchHHHHHHHHHHH--HhCCCCEEEEecCCCHHHHHHHHHHHhcccceecccccccccccccccc
Confidence 4689999999943333 33344444333 2348999999999974 55556654322222211111100000 000
Q ss_pred C-chhHHHH----HHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcC
Q 008209 105 P-ERDYLEA----AIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFE 179 (574)
Q Consensus 105 ~-~~~~~~~----~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~ 179 (574)
. ..+..+. ....+.. ...+++++||-+||...+.++++.|+.. .. .++-+||.+...+|.+..+
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~--~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~--------~~-~v~LlHSRf~~~dR~~ke~ 484 (733)
T COG1203 416 KERVDVEDGPQEELIELISE--EVKEGKKVLVIVNTVDRAIELYEKLKEK--------GP-KVLLLHSRFTLKDREEKER 484 (733)
T ss_pred ccchhhhhhhhHhhhhcchh--hhccCCcEEEEEecHHHHHHHHHHHHhc--------CC-CEEEEecccchhhHHHHHH
Confidence 0 0111111 1111111 1256899999999999999999999862 22 7999999999999987766
Q ss_pred CC----CCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC
Q 008209 180 PA----PPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ 255 (574)
Q Consensus 180 ~~----~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~ 255 (574)
.. ..+. -.|+|||.+.|.||||+ .+++| +.+.+..+.+||+||.+|.|
T Consensus 485 ~l~~~~~~~~-------~~IvVaTQVIEagvDid-fd~mI--------------------Te~aPidSLIQR~GRv~R~g 536 (733)
T COG1203 485 ELKKLFKQNE-------GFIVVATQVIEAGVDID-FDVLI--------------------TELAPIDSLIQRAGRVNRHG 536 (733)
T ss_pred HHHHHHhccC-------CeEEEEeeEEEEEeccc-cCeee--------------------ecCCCHHHHHHHHHHHhhcc
Confidence 32 2222 68999999999999997 66666 66888899999999999999
Q ss_pred ---CCeEEeecc
Q 008209 256 ---PGKCFRLYT 264 (574)
Q Consensus 256 ---~G~~~rl~t 264 (574)
+|..|..-.
T Consensus 537 ~~~~~~~~v~~~ 548 (733)
T COG1203 537 KKENGKIYVYND 548 (733)
T ss_pred cccCCceeEeec
Confidence 455555433
No 109
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.42 E-value=1.8e-13 Score=129.05 Aligned_cols=187 Identities=19% Similarity=0.290 Sum_probs=120.0
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCC--HHHHHhhhC
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLE--AEKFQGYFY 83 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~--~~~~~~~f~ 83 (574)
.++|+++|||+++....+.. .|.++.+.|+||++.---..|.--. ...+.+ ...+-|+.++|||+. .....+-|.
T Consensus 161 ~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRD-vQEifr~tp~~KQvmmfsatlskeiRpvC~kFm 239 (387)
T KOG0329|consen 161 CPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRD-VQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFM 239 (387)
T ss_pred CCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHH-HHHHhhcCcccceeeeeeeecchhhHHHHHhhh
Confidence 37899999999999887655 5999999999999841111221111 111222 345678999999995 444444333
Q ss_pred CCCe-EEeCC----eeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCC
Q 008209 84 GAPL-MKVPG----RLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVG 158 (574)
Q Consensus 84 ~~~~-i~~~g----r~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~ 158 (574)
..|+ |.++. ..+-...+|.+-.+.... ..+..+....+-.+++||+.+... |
T Consensus 240 QdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKN----rkl~dLLd~LeFNQVvIFvKsv~R-------l------------ 296 (387)
T KOG0329|consen 240 QDPMEIFVDDEAKLTLHGLQQYYVKLKENEKN----RKLNDLLDVLEFNQVVIFVKSVQR-------L------------ 296 (387)
T ss_pred cCchhhhccchhhhhhhhHHHHHHhhhhhhhh----hhhhhhhhhhhhcceeEeeehhhh-------h------------
Confidence 2221 22211 122334444432221111 122223222346678888876543 1
Q ss_pred CeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeee
Q 008209 159 PVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP 238 (574)
Q Consensus 159 ~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~ 238 (574)
+ | . ++ +|||++..+|++|..|..|+|+++ |
T Consensus 297 -----------~-------f------~-------kr-~vat~lfgrgmdiervNi~~NYdm------------------p 326 (387)
T KOG0329|consen 297 -----------S-------F------Q-------KR-LVATDLFGRGMDIERVNIVFNYDM------------------P 326 (387)
T ss_pred -----------h-------h------h-------hh-hHHhhhhccccCcccceeeeccCC------------------C
Confidence 0 1 0 34 999999999999999999999998 8
Q ss_pred ccHhhHHHhcccCCCCCC-CeEEeecccccc
Q 008209 239 ISKASAHQRSGRAGRTQP-GKCFRLYTEKSF 268 (574)
Q Consensus 239 is~~~~~QR~GRaGR~~~-G~~~rl~t~~~~ 268 (574)
-+..+|.||.|||||-|. |..+.+.+.+.-
T Consensus 327 ~~~DtYlHrv~rAgrfGtkglaitfvs~e~d 357 (387)
T KOG0329|consen 327 EDSDTYLHRVARAGRFGTKGLAITFVSDEND 357 (387)
T ss_pred CCchHHHHHhhhhhccccccceeehhcchhh
Confidence 888999999999999995 888888776544
No 110
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.41 E-value=2.3e-13 Score=109.80 Aligned_cols=73 Identities=23% Similarity=0.274 Sum_probs=69.0
Q ss_pred CCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeee
Q 008209 158 GPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVS 237 (574)
Q Consensus 158 ~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~ 237 (574)
.++.+..+||+++..+|..+++.|..+. .+|++||++++.|||+|++++||.++.
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~-------~~vli~t~~~~~Gid~~~~~~vi~~~~------------------ 60 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGE-------IRVLIATDILGEGIDLPDASHVIFYDP------------------ 60 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTS-------SSEEEESCGGTTSSTSTTESEEEESSS------------------
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccC-------ceEEEeecccccccccccccccccccc------------------
Confidence 5788999999999999999999999988 899999999999999999999998887
Q ss_pred eccHhhHHHhcccCCCCC
Q 008209 238 PISKASAHQRSGRAGRTQ 255 (574)
Q Consensus 238 ~is~~~~~QR~GRaGR~~ 255 (574)
|.|..++.||.||+||.|
T Consensus 61 ~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 61 PWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp ESSHHHHHHHHTTSSTTT
T ss_pred CCCHHHHHHHhhcCCCCC
Confidence 889999999999999975
No 111
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.39 E-value=1.7e-12 Score=145.18 Aligned_cols=162 Identities=20% Similarity=0.279 Sum_probs=117.0
Q ss_pred cEEEEccCCC--HHHHHhhhCCCCeEEeCCeeece------eEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCH
Q 008209 65 KLVVMSATLE--AEKFQGYFYGAPLMKVPGRLHPV------EIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGE 136 (574)
Q Consensus 65 klvlmSATl~--~~~~~~~f~~~~~i~~~gr~~~v------~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~ 136 (574)
|+-+|+.|.. ...|.+.+ +-.|+.+|... |+ +..|. ...+...+.+..+...+ ..+.+||||++|+
T Consensus 535 kLaGMTGTA~te~~Ef~~iY-~L~Vv~IPTnr-P~~R~D~~d~vy~--t~~eK~~Ali~~I~~~~--~~grpVLIft~Sv 608 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEIY-KLDVVVIPTNK-PIVRKDMDDLVYK--TRREKYNAIVLKVEELQ--KKGQPVLVGTASV 608 (1025)
T ss_pred hhcccCCCChhHHHHHHHHh-CCcEEECCCCC-CcceecCCCeEec--CHHHHHHHHHHHHHHHh--hCCCCEEEEeCcH
Confidence 6777777773 34454444 46677776532 32 12232 22345555566665555 3578999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCC---CeEE
Q 008209 137 EEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTID---GIVY 213 (574)
Q Consensus 137 ~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip---~v~~ 213 (574)
+..+.+.+.|.+ .++....||+ .+.+|+..+..+..+. -.|+||||+|.||+||+ +|..
T Consensus 609 e~sE~Ls~~L~~---------~gI~h~vLna--kq~~REa~Iia~AG~~-------g~VtIATNMAGRGtDIkl~~~V~~ 670 (1025)
T PRK12900 609 EVSETLSRMLRA---------KRIAHNVLNA--KQHDREAEIVAEAGQK-------GAVTIATNMAGRGTDIKLGEGVRE 670 (1025)
T ss_pred HHHHHHHHHHHH---------cCCCceeecC--CHHHhHHHHHHhcCCC-------CeEEEeccCcCCCCCcCCccchhh
Confidence 999999999986 4566778887 4667777777777666 79999999999999999 5543
Q ss_pred -----EEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC-CCeEEeecccccc
Q 008209 214 -----VIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ-PGKCFRLYTEKSF 268 (574)
Q Consensus 214 -----VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~-~G~~~rl~t~~~~ 268 (574)
||++.. |-|.-.+.||.|||||.| ||.+..+.+.++.
T Consensus 671 vGGL~VIgter------------------hes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 671 LGGLFILGSER------------------HESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred hCCceeeCCCC------------------CchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 364443 778888999999999999 6999998887664
No 112
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.27 E-value=1.2e-11 Score=141.76 Aligned_cols=119 Identities=11% Similarity=0.119 Sum_probs=98.3
Q ss_pred HHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEE
Q 008209 116 TVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKI 195 (574)
Q Consensus 116 ~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kv 195 (574)
.+..+.....+.++|||+.++..+..+.+.|.+ ..++.+..+||+++..+|.++++.|..+. +..+|
T Consensus 483 ~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~--------~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~-----~~~~V 549 (956)
T PRK04914 483 WLIDFLKSHRSEKVLVICAKAATALQLEQALRE--------REGIRAAVFHEGMSIIERDRAAAYFADEE-----DGAQV 549 (956)
T ss_pred HHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhh--------ccCeeEEEEECCCCHHHHHHHHHHHhcCC-----CCccE
Confidence 344555545578999999999999999999954 24688999999999999999999987632 12799
Q ss_pred EEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCC-C--eEEeeccc
Q 008209 196 VVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQP-G--KCFRLYTE 265 (574)
Q Consensus 196 ivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~-G--~~~rl~t~ 265 (574)
+|||+++++|+|++.+++||++++ |-++..|.||.||+||.|. | .+|.++.+
T Consensus 550 LIsTdvgseGlNlq~a~~VInfDl------------------P~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~ 604 (956)
T PRK04914 550 LLCSEIGSEGRNFQFASHLVLFDL------------------PFNPDLLEQRIGRLDRIGQKHDIQIHVPYLE 604 (956)
T ss_pred EEechhhccCCCcccccEEEEecC------------------CCCHHHHHHHhcccccCCCCceEEEEEccCC
Confidence 999999999999999999999888 8999999999999999884 3 34444443
No 113
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.27 E-value=8.7e-11 Score=126.12 Aligned_cols=206 Identities=19% Similarity=0.213 Sum_probs=134.4
Q ss_pred CeEEEchHHHHHH-HhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCcc-EEEEccCC---CH---HHHHhh
Q 008209 10 GGRYLTDGMLLRE-AMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLK-LVVMSATL---EA---EKFQGY 81 (574)
Q Consensus 10 ~I~~~T~g~Ll~~-l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~k-lvlmSATl---~~---~~~~~~ 81 (574)
.|+|.|.-.+.+. .+......+++.||+||+|.-+..... .++ ....... ++++|||+ |. ..+..+
T Consensus 124 ~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~--~~~----~~~~~~~~~LGLTATp~R~D~~~~~~l~~~ 197 (442)
T COG1061 124 KVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYR--RIL----ELLSAAYPRLGLTATPEREDGGRIGDLFDL 197 (442)
T ss_pred cEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHH--HHH----HhhhcccceeeeccCceeecCCchhHHHHh
Confidence 5999999999887 333334458999999999963333322 122 2222344 99999996 32 233333
Q ss_pred hCCCCeEEeC-------CeeeceeEEeecC-----CchhHHH-----------------------------HHHHHHHHH
Q 008209 82 FYGAPLMKVP-------GRLHPVEIFYTQE-----PERDYLE-----------------------------AAIRTVVQI 120 (574)
Q Consensus 82 f~~~~~i~~~-------gr~~~v~~~y~~~-----~~~~~~~-----------------------------~~~~~~~~i 120 (574)
++ ..+..++ |-.-|........ ....+.. ..+..+..+
T Consensus 198 ~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (442)
T COG1061 198 IG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGL 276 (442)
T ss_pred cC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHH
Confidence 32 2233322 2222322211111 0000000 001111112
Q ss_pred HhcC-CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEec
Q 008209 121 HMCE-PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVST 199 (574)
Q Consensus 121 ~~~~-~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT 199 (574)
.... .+.+++||+.....+..++..+.. ++. +..+.+..+..+|..+++.|+.|. .++|+++
T Consensus 277 ~~~~~~~~~~lif~~~~~~a~~i~~~~~~---------~~~-~~~it~~t~~~eR~~il~~fr~g~-------~~~lv~~ 339 (442)
T COG1061 277 LLKHARGDKTLIFASDVEHAYEIAKLFLA---------PGI-VEAITGETPKEEREAILERFRTGG-------IKVLVTV 339 (442)
T ss_pred HHHhcCCCcEEEEeccHHHHHHHHHHhcC---------CCc-eEEEECCCCHHHHHHHHHHHHcCC-------CCEEEEe
Confidence 2112 467999999999999999998864 333 788999999999999999999987 9999999
Q ss_pred ccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCC
Q 008209 200 NIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPG 257 (574)
Q Consensus 200 ~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G 257 (574)
.++..|+|+|++.++|= ..-.-|+..+.||.||.=|..+|
T Consensus 340 ~vl~EGvDiP~~~~~i~------------------~~~t~S~~~~~Q~lGR~LR~~~~ 379 (442)
T COG1061 340 KVLDEGVDIPDADVLII------------------LRPTGSRRLFIQRLGRGLRPAEG 379 (442)
T ss_pred eeccceecCCCCcEEEE------------------eCCCCcHHHHHHHhhhhccCCCC
Confidence 99999999999999992 11256889999999999995543
No 114
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.23 E-value=1.1e-11 Score=100.33 Aligned_cols=73 Identities=36% Similarity=0.419 Sum_probs=67.4
Q ss_pred CCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeee
Q 008209 158 GPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVS 237 (574)
Q Consensus 158 ~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~ 237 (574)
.++.+..+||++++++|..+++.|..+. .+|+++|++++.|+|+|++++||..+.
T Consensus 10 ~~~~~~~~~~~~~~~~r~~~~~~f~~~~-------~~vli~t~~~~~Gi~~~~~~~vi~~~~------------------ 64 (82)
T smart00490 10 LGIKVARLHGGLSQEEREEILEKFNNGK-------IKVLVATDVAERGLDLPGVDLVIIYDL------------------ 64 (82)
T ss_pred CCCeEEEEECCCCHHHHHHHHHHHHcCC-------CeEEEECChhhCCcChhcCCEEEEeCC------------------
Confidence 3678999999999999999999999887 899999999999999999999997776
Q ss_pred eccHhhHHHhcccCCCCC
Q 008209 238 PISKASAHQRSGRAGRTQ 255 (574)
Q Consensus 238 ~is~~~~~QR~GRaGR~~ 255 (574)
|.+..++.||.||+||.+
T Consensus 65 ~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 65 PWSPASYIQRIGRAGRAG 82 (82)
T ss_pred CCCHHHHHHhhcccccCC
Confidence 789999999999999975
No 115
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.23 E-value=5.7e-11 Score=123.35 Aligned_cols=221 Identities=13% Similarity=0.084 Sum_probs=152.9
Q ss_pred CCCeEEEchHHHHHHHhcCC-----CCCCccEEEEecCCCCCcchHHHHH-HHHHHHh------hCCCccEEEEccCC-C
Q 008209 8 LLGGRYLTDGMLLREAMTDP-----LLERYKVIVLDEAHERTLATDVLFG-LLKEVLK------NRPDLKLVVMSATL-E 74 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-----~L~~~~~vIiDE~HeR~~~~d~ll~-~lk~~~~------~~~~~klvlmSATl-~ 74 (574)
+-+++|.-+.+....++.+. .+-...++++||.|-.-.-+..+.+ .+|+++. ...+++++-.|||+ +
T Consensus 384 ~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~ 463 (1034)
T KOG4150|consen 384 GLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKD 463 (1034)
T ss_pred CcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCC
Confidence 56778888887766655432 3445678999999943222222222 2233222 34689999999999 3
Q ss_pred -HHHHHhhhC--CCCeEEeCCeeeceeEE--eecCCc-------hhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHH
Q 008209 75 -AEKFQGYFY--GAPLMKVPGRLHPVEIF--YTQEPE-------RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDA 142 (574)
Q Consensus 75 -~~~~~~~f~--~~~~i~~~gr~~~v~~~--y~~~~~-------~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~ 142 (574)
....++.|+ ...++.++|.+..-+.+ |.|... .+++........++. ..+-..+.|||+++-|+.+
T Consensus 464 ~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i--~~~~R~IAFC~~R~~CEL~ 541 (1034)
T KOG4150|consen 464 RTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMV--QHGLRCIAFCPSRKLCELV 541 (1034)
T ss_pred HHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHH--HcCCcEEEeccHHHHHHHH
Confidence 455566665 35578888876554433 333211 122222222222322 3577899999999988887
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccc
Q 008209 143 CRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQ 222 (574)
Q Consensus 143 ~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~ 222 (574)
....++.+.+.+. ..--.|..+.||...++|+++......|. .+-|+|||.+|-||||.+.+.|+.+|+
T Consensus 542 ~~~~R~I~~ET~~-~LV~~i~SYRGGY~A~DRRKIE~~~F~G~-------L~giIaTNALELGIDIG~LDAVl~~GF--- 610 (1034)
T KOG4150|consen 542 LCLTREILAETAP-HLVEAITSYRGGYIAEDRRKIESDLFGGK-------LCGIIATNALELGIDIGHLDAVLHLGF--- 610 (1034)
T ss_pred HHHHHHHHHHhhH-HHHHHHHhhcCccchhhHHHHHHHhhCCe-------eeEEEecchhhhccccccceeEEEccC---
Confidence 7776665443221 01124667899999999999999998888 999999999999999999999999999
Q ss_pred eeecCCCCcceeeeeeccHhhHHHhcccCCCCCC
Q 008209 223 KVYNPRVRVESLLVSPISKASAHQRSGRAGRTQP 256 (574)
Q Consensus 223 ~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~ 256 (574)
|.|.+++.|..|||||...
T Consensus 611 ---------------P~S~aNl~QQ~GRAGRRNk 629 (1034)
T KOG4150|consen 611 ---------------PGSIANLWQQAGRAGRRNK 629 (1034)
T ss_pred ---------------chhHHHHHHHhccccccCC
Confidence 9999999999999999874
No 116
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.10 E-value=9.3e-10 Score=123.44 Aligned_cols=178 Identities=21% Similarity=0.213 Sum_probs=117.6
Q ss_pred cEEEEccCCC--HHHHHhhhCCCCeEEeCCeeece------eEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCH
Q 008209 65 KLVVMSATLE--AEKFQGYFYGAPLMKVPGRLHPV------EIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGE 136 (574)
Q Consensus 65 klvlmSATl~--~~~~~~~f~~~~~i~~~gr~~~v------~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~ 136 (574)
|+-+|+.|.. .+.|.+.+ +.+|+.+|... |+ +..|. ...+.+.+.+..+...|. .+.+||||++|.
T Consensus 381 kLsGMTGTa~te~~Ef~~iY-~l~Vv~IPtnk-p~~R~d~~d~v~~--t~~~k~~av~~~i~~~~~--~g~PVLVgt~Si 454 (896)
T PRK13104 381 KLSGMTGTADTEAYEFQQIY-NLEVVVIPTNR-SMIRKDEADLVYL--TQADKFQAIIEDVRECGV--RKQPVLVGTVSI 454 (896)
T ss_pred hhccCCCCChhHHHHHHHHh-CCCEEECCCCC-CcceecCCCeEEc--CHHHHHHHHHHHHHHHHh--CCCCEEEEeCcH
Confidence 6778888873 45555554 46777776532 32 12232 234566677777777764 688999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCC---eEE
Q 008209 137 EEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDG---IVY 213 (574)
Q Consensus 137 ~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~---v~~ 213 (574)
+..+.+++.|.+ .++....||+...+.|+..+.+.+.+| .|.||||+|.+|+||-= ..+
T Consensus 455 e~sE~ls~~L~~---------~gi~h~vLnak~~q~Ea~iia~Ag~~G---------~VtIATNmAGRGtDI~Lggn~~~ 516 (896)
T PRK13104 455 EASEFLSQLLKK---------ENIKHQVLNAKFHEKEAQIIAEAGRPG---------AVTIATNMAGRGTDIVLGGSLAA 516 (896)
T ss_pred HHHHHHHHHHHH---------cCCCeEeecCCCChHHHHHHHhCCCCC---------cEEEeccCccCCcceecCCchhh
Confidence 999999999987 567888999999999999999998876 39999999999999861 000
Q ss_pred -EEcCCccc---------------ceeecCCCCcceeee-eeccHhhHHHhcccCCCCC-CCeEEeecccc
Q 008209 214 -VIDPGFAK---------------QKVYNPRVRVESLLV-SPISKASAHQRSGRAGRTQ-PGKCFRLYTEK 266 (574)
Q Consensus 214 -VID~g~~k---------------~~~y~~~~~~~~l~~-~~is~~~~~QR~GRaGR~~-~G~~~rl~t~~ 266 (574)
+.+.-... ..---..-|+..+.+ .+-|+--=.|=.|||||.| ||.+--+.|-+
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSle 587 (896)
T PRK13104 517 DLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLE 587 (896)
T ss_pred hhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcC
Confidence 00000000 000000122222222 3456666689999999999 68765555533
No 117
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.07 E-value=4e-09 Score=119.17 Aligned_cols=225 Identities=15% Similarity=0.116 Sum_probs=129.1
Q ss_pred CCCeEEEchHHHHHHHhcC--C-----CC-CCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHH-
Q 008209 8 LLGGRYLTDGMLLREAMTD--P-----LL-ERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKF- 78 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~--~-----~L-~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~- 78 (574)
...+.|||..-++.-.+.- + .| -.-++|||||+|-.+..+-.+|..+-.++ ...+.++|+||||+.....
T Consensus 562 ~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~-~~lG~~VlLmSATLP~~l~~ 640 (1110)
T TIGR02562 562 AAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLA-GLLGSRVLLSSATLPPALVK 640 (1110)
T ss_pred cCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHH-HHcCCCEEEEeCCCCHHHHH
Confidence 3679999998888766321 1 11 13578999999976666554444333333 3347899999999975433
Q ss_pred ---HhhhCCCC----eEEeCCeeecee---------------------------------------------EEeecCCc
Q 008209 79 ---QGYFYGAP----LMKVPGRLHPVE---------------------------------------------IFYTQEPE 106 (574)
Q Consensus 79 ---~~~f~~~~----~i~~~gr~~~v~---------------------------------------------~~y~~~~~ 106 (574)
..|..+.. ....+++..++- +...+.+.
T Consensus 641 ~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~ 720 (1110)
T TIGR02562 641 TLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLP 720 (1110)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcc
Confidence 33432100 001111111110 01111110
Q ss_pred -------hhHHHHHHHHHHHHHhcC----C-CCC----EEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCC
Q 008209 107 -------RDYLEAAIRTVVQIHMCE----P-SGD----ILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLP 170 (574)
Q Consensus 107 -------~~~~~~~~~~~~~i~~~~----~-~g~----iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~ 170 (574)
..+.....+.++.+|... + .|+ -||=+.+...+..+++.|..... .....+.++.+||.-+
T Consensus 721 ~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~---~~~~~i~~~~yHSr~~ 797 (1110)
T TIGR02562 721 RENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLA---EEKYQIHLCCYHAQDP 797 (1110)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhcc---ccCCceeEEEecccCh
Confidence 122333344455555421 1 222 35667777777778888776432 2235677899999997
Q ss_pred HHHHhhhcCCC---CCC----------------CCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCc
Q 008209 171 PAMQQKIFEPA---PPP----------------SKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRV 231 (574)
Q Consensus 171 ~~~q~~v~~~~---~~g----------------~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~ 231 (574)
...|..+.+.. -+. ..........|||||.+.|.|+|++ .+++|
T Consensus 798 l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~---------------- 860 (1110)
T TIGR02562 798 LLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAI---------------- 860 (1110)
T ss_pred HHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeee----------------
Confidence 76665543221 000 0000112379999999999999997 44444
Q ss_pred ceeeeeeccHhhHHHhcccCCCCCCC
Q 008209 232 ESLLVSPISKASAHQRSGRAGRTQPG 257 (574)
Q Consensus 232 ~~l~~~~is~~~~~QR~GRaGR~~~G 257 (574)
+.+.+..+.+||+||..|.+.+
T Consensus 861 ----~~~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 861 ----ADPSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred ----eccCcHHHHHHHhhcccccccC
Confidence 4578889999999999999843
No 118
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.06 E-value=1.3e-09 Score=122.05 Aligned_cols=178 Identities=17% Similarity=0.212 Sum_probs=115.9
Q ss_pred cEEEEccCCC--HHHHHhhhCCCCeEEeCCeeecee------EEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCH
Q 008209 65 KLVVMSATLE--AEKFQGYFYGAPLMKVPGRLHPVE------IFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGE 136 (574)
Q Consensus 65 klvlmSATl~--~~~~~~~f~~~~~i~~~gr~~~v~------~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~ 136 (574)
++-+||.|.. .+.|.+.+ +.+++.+|.-. |+. ..|. ...+...+.+..+...|. .+.+||||+++.
T Consensus 367 kl~GmTGTa~te~~E~~~iY-~l~vv~IPtnk-p~~r~d~~d~i~~--t~~~K~~aI~~~I~~~~~--~grpVLIft~Si 440 (830)
T PRK12904 367 KLAGMTGTADTEAEEFREIY-NLDVVVIPTNR-PMIRIDHPDLIYK--TEKEKFDAVVEDIKERHK--KGQPVLVGTVSI 440 (830)
T ss_pred hhcccCCCcHHHHHHHHHHh-CCCEEEcCCCC-CeeeeeCCCeEEE--CHHHHHHHHHHHHHHHHh--cCCCEEEEeCcH
Confidence 7888899883 45555555 46777777632 322 2232 223455555666655553 577999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCe---EE
Q 008209 137 EEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGI---VY 213 (574)
Q Consensus 137 ~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v---~~ 213 (574)
+..+.+.+.|.+ .++....||+. +.+|...+..+..+. ..|+||||+|.||+||+== .+
T Consensus 441 ~~se~Ls~~L~~---------~gi~~~vLnak--q~eREa~Iia~Ag~~-------g~VtIATNmAGRGtDI~LgGn~~~ 502 (830)
T PRK12904 441 EKSELLSKLLKK---------AGIPHNVLNAK--NHEREAEIIAQAGRP-------GAVTIATNMAGRGTDIKLGGNPEM 502 (830)
T ss_pred HHHHHHHHHHHH---------CCCceEeccCc--hHHHHHHHHHhcCCC-------ceEEEecccccCCcCccCCCchhh
Confidence 999999999986 46778889996 678888888887777 8999999999999999721 00
Q ss_pred EEcCCccc----------------ceeecCCCCcceeee-eeccHhhHHHhcccCCCCC-CCeEEeecccc
Q 008209 214 VIDPGFAK----------------QKVYNPRVRVESLLV-SPISKASAHQRSGRAGRTQ-PGKCFRLYTEK 266 (574)
Q Consensus 214 VID~g~~k----------------~~~y~~~~~~~~l~~-~~is~~~~~QR~GRaGR~~-~G~~~rl~t~~ 266 (574)
.....+.. ...--..-|+....+ .+-|+--=.|=.|||||.| ||.+--+.|-+
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSle 573 (830)
T PRK12904 503 LAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLE 573 (830)
T ss_pred hhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcC
Confidence 00000000 000001123333333 3667777789999999999 68876655544
No 119
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.05 E-value=2.4e-09 Score=119.91 Aligned_cols=168 Identities=21% Similarity=0.215 Sum_probs=115.6
Q ss_pred cEEEEccCCC--HHHHHhhhCCCCeEEeCCeeece------eEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCH
Q 008209 65 KLVVMSATLE--AEKFQGYFYGAPLMKVPGRLHPV------EIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGE 136 (574)
Q Consensus 65 klvlmSATl~--~~~~~~~f~~~~~i~~~gr~~~v------~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~ 136 (574)
|+-+|+.|.. ...|.+.+ +..++.+|... |+ +..|. .......+.++.+...|. .+-+||||+.+.
T Consensus 386 kL~GMTGTa~te~~Ef~~iY-~l~Vv~IPTnk-p~~R~d~~d~iy~--t~~~K~~Aii~ei~~~~~--~GrpVLV~t~sv 459 (908)
T PRK13107 386 KLAGMTGTADTEAFEFQHIY-GLDTVVVPTNR-PMVRKDMADLVYL--TADEKYQAIIKDIKDCRE--RGQPVLVGTVSI 459 (908)
T ss_pred HhhcccCCChHHHHHHHHHh-CCCEEECCCCC-CccceeCCCcEEe--CHHHHHHHHHHHHHHHHH--cCCCEEEEeCcH
Confidence 6778888873 34454444 46677776532 21 12232 234556677788877775 588999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCe---E-
Q 008209 137 EEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGI---V- 212 (574)
Q Consensus 137 ~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v---~- 212 (574)
+..+.++..|.+ .++....||+..++.|+..+.+.+.+| +|.||||+|.+|+||.== .
T Consensus 460 ~~se~ls~~L~~---------~gi~~~vLnak~~~~Ea~ii~~Ag~~G---------~VtIATnmAGRGTDIkLggn~~~ 521 (908)
T PRK13107 460 EQSELLARLMVK---------EKIPHEVLNAKFHEREAEIVAQAGRTG---------AVTIATNMAGRGTDIVLGGNWNM 521 (908)
T ss_pred HHHHHHHHHHHH---------CCCCeEeccCcccHHHHHHHHhCCCCC---------cEEEecCCcCCCcceecCCchHH
Confidence 999999999986 567788899999999999999988876 399999999999998610 0
Q ss_pred -------------------------EEEcCCcccceeecCCCCcceeee-eeccHhhHHHhcccCCCCC-CCeEEeeccc
Q 008209 213 -------------------------YVIDPGFAKQKVYNPRVRVESLLV-SPISKASAHQRSGRAGRTQ-PGKCFRLYTE 265 (574)
Q Consensus 213 -------------------------~VID~g~~k~~~y~~~~~~~~l~~-~~is~~~~~QR~GRaGR~~-~G~~~rl~t~ 265 (574)
-|.. .-|+....+ .+-|+--=.|=.|||||.| ||.+--+.|-
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-----------~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSl 590 (908)
T PRK13107 522 EIEALENPTAEQKAKIKADWQIRHDEVVA-----------AGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSM 590 (908)
T ss_pred hhhhhcchhhHHHHHHHHHHHhhHHHHHH-----------cCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEe
Confidence 0111 012222211 3455555679999999999 7887665554
Q ss_pred cc
Q 008209 266 KS 267 (574)
Q Consensus 266 ~~ 267 (574)
++
T Consensus 591 ED 592 (908)
T PRK13107 591 ED 592 (908)
T ss_pred Cc
Confidence 43
No 120
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.00 E-value=6.4e-09 Score=114.50 Aligned_cols=76 Identities=16% Similarity=0.128 Sum_probs=61.1
Q ss_pred EEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccH
Q 008209 162 VVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISK 241 (574)
Q Consensus 162 v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~ 241 (574)
+..+|++|...+|..|.--|+.|. ..|++||.+++-||+.|--++|. +.++| ..++
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~-------L~VlfaT~TLsLGiNMPCrTVvF--------------~gDsL---QL~p 1020 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGH-------LQVLFATETLSLGINMPCRTVVF--------------AGDSL---QLDP 1020 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCc-------eEEEEEeeehhcccCCCceeEEE--------------ecccc---ccCc
Confidence 557899999999999988899998 99999999999999999555554 12233 3456
Q ss_pred hhHHHhcccCCCCC---CCeEEe
Q 008209 242 ASAHQRSGRAGRTQ---PGKCFR 261 (574)
Q Consensus 242 ~~~~QR~GRaGR~~---~G~~~r 261 (574)
-.|.|++|||||.| -|.+.-
T Consensus 1021 lny~QmaGRAGRRGFD~lGnV~F 1043 (1330)
T KOG0949|consen 1021 LNYKQMAGRAGRRGFDTLGNVVF 1043 (1330)
T ss_pred hhHHhhhccccccccccccceEE
Confidence 68999999999999 355443
No 121
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.94 E-value=2e-08 Score=116.07 Aligned_cols=115 Identities=13% Similarity=0.078 Sum_probs=89.9
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccc
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 204 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~ 204 (574)
.+.+||||..-....+.+.+.|.. .++.++.+||+++..+|..+++.|.... ....-+++||..+..
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~---------~g~~y~rIdGsts~~eRq~~Id~Fn~~~----s~~~VfLLSTrAGGl 552 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMY---------RGYQYCRIDGNTGGEDRDASIDAFNKPG----SEKFVFLLSTRAGGL 552 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHH---------cCCcEEEECCCCCHHHHHHHHHHhcccc----CCceEEEEecccccc
Confidence 467899998877666666666653 4677899999999999999988885421 112467899999999
Q ss_pred cccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCC---CeEEeecccccccc
Q 008209 205 SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQP---GKCFRLYTEKSFNN 270 (574)
Q Consensus 205 gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~---G~~~rl~t~~~~~~ 270 (574)
|||+...++||.++. |-+++...|+.||+.|.|. =.+|||+++...++
T Consensus 553 GINLt~Ad~VIiyD~------------------dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEE 603 (1033)
T PLN03142 553 GINLATADIVILYDS------------------DWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEE 603 (1033)
T ss_pred CCchhhCCEEEEeCC------------------CCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHH
Confidence 999999999995443 4566788999999999884 46899999877654
No 122
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.86 E-value=1.4e-08 Score=106.13 Aligned_cols=116 Identities=26% Similarity=0.406 Sum_probs=86.3
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHh---hhcCCCCCCCCCCCCCCcEEEEecc
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQ---KIFEPAPPPSKEGGPPGRKIVVSTN 200 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~---~v~~~~~~g~~~~~~~~~kvivaT~ 200 (574)
-..|+.+|=+ ++++|-.+...+++. +...+..+||+||++.|. ..|+...+ . .+|+|||+
T Consensus 355 lk~GDCvV~F-Skk~I~~~k~kIE~~--------g~~k~aVIYGsLPPeTr~aQA~~FNd~~~-e-------~dvlVAsD 417 (700)
T KOG0953|consen 355 LKPGDCVVAF-SKKDIFTVKKKIEKA--------GNHKCAVIYGSLPPETRLAQAALFNDPSN-E-------CDVLVASD 417 (700)
T ss_pred CCCCCeEEEe-ehhhHHHHHHHHHHh--------cCcceEEEecCCCCchhHHHHHHhCCCCC-c-------cceEEeec
Confidence 3466665543 678899999999872 456689999999998754 34554433 3 79999999
Q ss_pred cccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC----CCeEEeecccc
Q 008209 201 IAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ----PGKCFRLYTEK 266 (574)
Q Consensus 201 iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~----~G~~~rl~t~~ 266 (574)
....|+|+. |+-||=+.+.| |+ .-.+.+++.+++.|-+|||||.+ .|.+=.++.++
T Consensus 418 AIGMGLNL~-IrRiiF~sl~K---ys------g~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 418 AIGMGLNLN-IRRIIFYSLIK---YS------GRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred ccccccccc-eeEEEEeeccc---CC------cccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh
Confidence 999999997 77777555433 33 33467999999999999999998 37666666653
No 123
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.70 E-value=2.7e-07 Score=101.37 Aligned_cols=211 Identities=18% Similarity=0.221 Sum_probs=124.3
Q ss_pred ccCCCeEEEchHHHHHHHhcC-C-----CCCCccEEEEecCCCCCcchHH--HHHHHHHHHhhCCCccEEEEccCCCH-H
Q 008209 6 CVLLGGRYLTDGMLLREAMTD-P-----LLERYKVIVLDEAHERTLATDV--LFGLLKEVLKNRPDLKLVVMSATLEA-E 76 (574)
Q Consensus 6 ~~~~~I~~~T~g~Ll~~l~~~-~-----~L~~~~~vIiDE~HeR~~~~d~--ll~~lk~~~~~~~~~klvlmSATl~~-~ 76 (574)
..+++|.++|.-.+...+... . .-..+++|||||+| ||+..+- ++.++.. . .++++||+.. .
T Consensus 254 ~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaH-Rgi~~~~~~I~dYFdA-------~-~~gLTATP~~~~ 324 (875)
T COG4096 254 DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAH-RGIYSEWSSILDYFDA-------A-TQGLTATPKETI 324 (875)
T ss_pred CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhh-hhHHhhhHHHHHHHHH-------H-HHhhccCccccc
Confidence 346799999998888777543 1 24569999999999 7876653 3333322 2 3334999842 1
Q ss_pred H--HHhhhCCCCeEE------------eCCeeeceeEEee-------cC-------------Cch--------------h
Q 008209 77 K--FQGYFYGAPLMK------------VPGRLHPVEIFYT-------QE-------------PER--------------D 108 (574)
Q Consensus 77 ~--~~~~f~~~~~i~------------~~gr~~~v~~~y~-------~~-------------~~~--------------~ 108 (574)
. --.||.+.|+.. +|.+...|.+.+. +. ... .
T Consensus 325 d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~ 404 (875)
T COG4096 325 DRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPF 404 (875)
T ss_pred ccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccc
Confidence 1 125675544421 2222222222111 10 000 0
Q ss_pred HHHHHHHHHHHHHhc---C-CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhh--cCCCC
Q 008209 109 YLEAAIRTVVQIHMC---E-PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKI--FEPAP 182 (574)
Q Consensus 109 ~~~~~~~~~~~i~~~---~-~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v--~~~~~ 182 (574)
..+.....+...... . ..++.|||+.+...++.+.+.+.+...+ ..+-.+..+-+.-... |..+ |.. +
T Consensus 405 ~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype----~~~~~a~~IT~d~~~~-q~~Id~f~~-k 478 (875)
T COG4096 405 RTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPE----YNGRYAMKITGDAEQA-QALIDNFID-K 478 (875)
T ss_pred hHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcc----ccCceEEEEeccchhh-HHHHHHHHh-c
Confidence 111122222233322 1 1578999999999999999999885543 1222344444443322 3333 222 2
Q ss_pred CCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCC
Q 008209 183 PPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQP 256 (574)
Q Consensus 183 ~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~ 256 (574)
+.. -+|.++.+++.||||+|.|..+| |+. .--|+.-+.||.||.-|.+|
T Consensus 479 e~~-------P~IaitvdlL~TGiDvpev~nlV---------F~r---------~VrSktkF~QMvGRGTRl~~ 527 (875)
T COG4096 479 EKY-------PRIAITVDLLTTGVDVPEVVNLV---------FDR---------KVRSKTKFKQMVGRGTRLCP 527 (875)
T ss_pred CCC-------CceEEehhhhhcCCCchheeeee---------ehh---------hhhhHHHHHHHhcCccccCc
Confidence 222 68999999999999999998887 121 13589999999999999985
No 124
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.64 E-value=1.3e-06 Score=101.76 Aligned_cols=179 Identities=18% Similarity=0.176 Sum_probs=108.3
Q ss_pred cEEEEccCCC----HHHHHhhhCC--CCeEEeCCeeece---eEEeecC--------CchhHHHHHHHHHHHHHhcCCCC
Q 008209 65 KLVVMSATLE----AEKFQGYFYG--APLMKVPGRLHPV---EIFYTQE--------PERDYLEAAIRTVVQIHMCEPSG 127 (574)
Q Consensus 65 klvlmSATl~----~~~~~~~f~~--~~~i~~~gr~~~v---~~~y~~~--------~~~~~~~~~~~~~~~i~~~~~~g 127 (574)
.+|++|||+. .+-|.+.++- .....+...+|+. ...|.+. ..+++.+.....+..+.. ..+|
T Consensus 597 ~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~-~~~g 675 (850)
T TIGR01407 597 SLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITA-ITSP 675 (850)
T ss_pred eEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH-hcCC
Confidence 6899999995 3455555542 1112221223331 1122211 124566666666766655 3568
Q ss_pred CEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccccccccc
Q 008209 128 DILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLT 207 (574)
Q Consensus 128 ~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~git 207 (574)
++|||+|+.+..+.++..|...... .++.++.- +.. ..|.++++.|+.+. ..|+++|+.+..|||
T Consensus 676 ~~LVlftS~~~l~~v~~~L~~~~~~-----~~~~~l~q--~~~-~~r~~ll~~F~~~~-------~~iLlgt~sf~EGVD 740 (850)
T TIGR01407 676 KILVLFTSYEMLHMVYDMLNELPEF-----EGYEVLAQ--GIN-GSRAKIKKRFNNGE-------KAILLGTSSFWEGVD 740 (850)
T ss_pred CEEEEeCCHHHHHHHHHHHhhhccc-----cCceEEec--CCC-ccHHHHHHHHHhCC-------CeEEEEcceeecccc
Confidence 9999999999999999999752211 23334332 222 45677778887776 789999999999999
Q ss_pred CCCeE--EEEcCCcccceeecCCC-------------Ccceee--eeeccHhhHHHhcccCCCCCC--CeEEee
Q 008209 208 IDGIV--YVIDPGFAKQKVYNPRV-------------RVESLL--VSPISKASAHQRSGRAGRTQP--GKCFRL 262 (574)
Q Consensus 208 ip~v~--~VID~g~~k~~~y~~~~-------------~~~~l~--~~~is~~~~~QR~GRaGR~~~--G~~~rl 262 (574)
+|+.. .||=.|+ +.-+|.. |.+... ..|-..-...|-.||.=|... |..+-+
T Consensus 741 ~~g~~l~~viI~~L---Pf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~il 811 (850)
T TIGR01407 741 FPGNGLVCLVIPRL---PFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVIL 811 (850)
T ss_pred cCCCceEEEEEeCC---CCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEE
Confidence 99876 4444454 3322221 111111 124455668899999999874 766554
No 125
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.62 E-value=5.9e-07 Score=94.01 Aligned_cols=164 Identities=18% Similarity=0.181 Sum_probs=118.3
Q ss_pred CccEEEEccCCCHHHHHhhhCC--CCeEEeCCeeec-eeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHH
Q 008209 63 DLKLVVMSATLEAEKFQGYFYG--APLMKVPGRLHP-VEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEI 139 (574)
Q Consensus 63 ~~klvlmSATl~~~~~~~~f~~--~~~i~~~gr~~~-v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei 139 (574)
..|+|..|||.....++.-=+. ..+|.-.|-.-| +++. |....++..+..+.... ..+..+||-.-|++.+
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~~vveQiIRPTGLlDP~ievR----p~~~QvdDL~~EI~~r~--~~~eRvLVTtLTKkmA 459 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGGNVVEQIIRPTGLLDPEIEVR----PTKGQVDDLLSEIRKRV--AKNERVLVTTLTKKMA 459 (663)
T ss_pred cCCEEEEECCCChHHHHhccCceeEEeecCCCCCCCceeee----cCCCcHHHHHHHHHHHH--hcCCeEEEEeehHHHH
Confidence 3589999999865544432111 123333333333 2332 22233333333343322 3468999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCc
Q 008209 140 EDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGF 219 (574)
Q Consensus 140 ~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~ 219 (574)
+.+.+.|.+ .++++-.+||.+..-||..++...+.|. ..|+|.-|.+--|+|+|.|..|--
T Consensus 460 EdLT~Yl~e---------~gikv~YlHSdidTlER~eIirdLR~G~-------~DvLVGINLLREGLDiPEVsLVAI--- 520 (663)
T COG0556 460 EDLTEYLKE---------LGIKVRYLHSDIDTLERVEIIRDLRLGE-------FDVLVGINLLREGLDLPEVSLVAI--- 520 (663)
T ss_pred HHHHHHHHh---------cCceEEeeeccchHHHHHHHHHHHhcCC-------ccEEEeehhhhccCCCcceeEEEE---
Confidence 999999987 6899999999999999999999999999 999999999999999999998762
Q ss_pred ccceeecCCC-CcceeeeeeccHhhHHHhcccCCCCCCCeEEee
Q 008209 220 AKQKVYNPRV-RVESLLVSPISKASAHQRSGRAGRTQPGKCFRL 262 (574)
Q Consensus 220 ~k~~~y~~~~-~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl 262 (574)
.|.+. |. .-|-.+.+|=.|||.|--.|.++--
T Consensus 521 -----lDADKeGF------LRse~SLIQtIGRAARN~~GkvIlY 553 (663)
T COG0556 521 -----LDADKEGF------LRSERSLIQTIGRAARNVNGKVILY 553 (663)
T ss_pred -----eecCcccc------ccccchHHHHHHHHhhccCCeEEEE
Confidence 22211 11 4577799999999999999998753
No 126
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.59 E-value=7.6e-07 Score=99.34 Aligned_cols=158 Identities=20% Similarity=0.247 Sum_probs=99.9
Q ss_pred cEEEEccCCC--HHHHHhhhCCCCeEEeCCeeecee------EEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCH
Q 008209 65 KLVVMSATLE--AEKFQGYFYGAPLMKVPGRLHPVE------IFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGE 136 (574)
Q Consensus 65 klvlmSATl~--~~~~~~~f~~~~~i~~~gr~~~v~------~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~ 136 (574)
|+-+||.|.. .+.|.+.. +..++.+|.-. |+. ..|. .....+.+.+..+...|. .+.+|||.+.+.
T Consensus 363 kLsGMTGTA~te~~Ef~~iY-~l~Vv~IPTnk-P~~R~D~~d~iy~--t~~~K~~Aii~ei~~~~~--~gqPVLVgT~SI 436 (925)
T PRK12903 363 KLSGMTGTAKTEEQEFIDIY-NMRVNVVPTNK-PVIRKDEPDSIFG--TKHAKWKAVVKEVKRVHK--KGQPILIGTAQV 436 (925)
T ss_pred hhhccCCCCHHHHHHHHHHh-CCCEEECCCCC-CeeeeeCCCcEEE--cHHHHHHHHHHHHHHHHh--cCCCEEEEeCcH
Confidence 6788888874 34455444 46777776532 322 2222 234455667777777774 588999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeE----
Q 008209 137 EEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIV---- 212 (574)
Q Consensus 137 ~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~---- 212 (574)
+..+.+.+.|.+ .++..-.|++.-...|-.-|-+.-.. -.|.||||+|.+|.||.--.
T Consensus 437 e~SE~ls~~L~~---------~gi~h~vLNAk~~e~EA~IIa~AG~~---------GaVTIATNMAGRGTDI~Lg~~V~~ 498 (925)
T PRK12903 437 EDSETLHELLLE---------ANIPHTVLNAKQNAREAEIIAKAGQK---------GAITIATNMAGRGTDIKLSKEVLE 498 (925)
T ss_pred HHHHHHHHHHHH---------CCCCceeecccchhhHHHHHHhCCCC---------CeEEEecccccCCcCccCchhHHH
Confidence 999999999986 22322334443222222222222222 47999999999999996222
Q ss_pred ----EEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC-CCeEEeecc
Q 008209 213 ----YVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ-PGKCFRLYT 264 (574)
Q Consensus 213 ----~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~-~G~~~rl~t 264 (574)
+||-+.. +-|+--=.|-.|||||.| ||.+--+.|
T Consensus 499 ~GGLhVIgTer------------------heSrRIDnQLrGRaGRQGDpGss~f~lS 537 (925)
T PRK12903 499 LGGLYVLGTDK------------------AESRRIDNQLRGRSGRQGDVGESRFFIS 537 (925)
T ss_pred cCCcEEEeccc------------------CchHHHHHHHhcccccCCCCCcceEEEe
Confidence 6663332 444445569999999999 687544444
No 127
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.57 E-value=4.6e-07 Score=100.99 Aligned_cols=202 Identities=18% Similarity=0.267 Sum_probs=117.8
Q ss_pred CCCccEEEEecCCCCCc------c---hHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhhCC-CCeEEeCCeee---
Q 008209 29 LERYKVIVLDEAHERTL------A---TDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYG-APLMKVPGRLH--- 95 (574)
Q Consensus 29 L~~~~~vIiDE~HeR~~------~---~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f~~-~~~i~~~gr~~--- 95 (574)
+.+++.|||||=|+=+. . -|+.+-+. ...+..+|+-|||...+.+.+-..+ -..+....|..
T Consensus 311 f~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra-----~~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~ 385 (730)
T COG1198 311 FKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRA-----KKENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRAR 385 (730)
T ss_pred hhhccEEEEeccccccccCCcCCCcCHHHHHHHHH-----HHhCCCEEEecCCCCHHHHHhhhcCceEEEEccccccccC
Confidence 68999999999994222 2 22222222 2347999999999999888776543 23344444433
Q ss_pred ceeEEeecCCc----hh--HHHHHHHHHHHHHhcCCCCCEEEEcCCHH--------------------------------
Q 008209 96 PVEIFYTQEPE----RD--YLEAAIRTVVQIHMCEPSGDILVFLTGEE-------------------------------- 137 (574)
Q Consensus 96 ~v~~~y~~~~~----~~--~~~~~~~~~~~i~~~~~~g~iLVFl~~~~-------------------------------- 137 (574)
+-++...+... .+ +-...++.+.+-. +.+.++|+|+|.+.
T Consensus 386 ~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l--~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L 463 (730)
T COG1198 386 LPRVEIIDMRKEPLETGRSLSPALLEAIRKTL--ERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQL 463 (730)
T ss_pred CCcceEEeccccccccCccCCHHHHHHHHHHH--hcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCee
Confidence 22222222111 11 1122233332222 34667777777665
Q ss_pred ----------------------------HHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCH--HHHhhhcCCCCCCCCC
Q 008209 138 ----------------------------EIEDACRKITKEITNMGDQVGPVKVVPLYSTLPP--AMQQKIFEPAPPPSKE 187 (574)
Q Consensus 138 ----------------------------ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~--~~q~~v~~~~~~g~~~ 187 (574)
-++++.+.|.+. .++..++.+-+.... ..-+..+..+.+|.
T Consensus 464 ~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~-------FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge-- 534 (730)
T COG1198 464 RCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRL-------FPGARIIRIDSDTTRRKGALEDLLDQFANGE-- 534 (730)
T ss_pred EeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHH-------CCCCcEEEEccccccchhhHHHHHHHHhCCC--
Confidence 233344444432 244556666655443 22345567777777
Q ss_pred CCCCCcEEEEecccccccccCCCeEEEE----cCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCC-CCCeEEe
Q 008209 188 GGPPGRKIVVSTNIAETSLTIDGIVYVI----DPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFR 261 (574)
Q Consensus 188 ~~~~~~kvivaT~iae~gitip~v~~VI----D~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~-~~G~~~r 261 (574)
..|+|-|.+.+.|.+.|+|+.|. |+|+ +.|+.+ ..--+-.-+.|=+|||||. .+|..+-
T Consensus 535 -----~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L-----~~~DfR-----A~Er~fqll~QvaGRAgR~~~~G~VvI 598 (730)
T COG1198 535 -----ADILIGTQMIAKGHDFPNVTLVGVLDADTGL-----GSPDFR-----ASERTFQLLMQVAGRAGRAGKPGEVVI 598 (730)
T ss_pred -----CCeeecchhhhcCCCcccceEEEEEechhhh-----cCCCcc-----hHHHHHHHHHHHHhhhccCCCCCeEEE
Confidence 89999999999999999999764 3333 222221 1233455678999999998 4676654
No 128
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.54 E-value=1.3e-06 Score=96.21 Aligned_cols=161 Identities=22% Similarity=0.293 Sum_probs=107.2
Q ss_pred cEEEEccCC--CHHHHHhhhCCCCeEEeCCeeecee------EEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCH
Q 008209 65 KLVVMSATL--EAEKFQGYFYGAPLMKVPGRLHPVE------IFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGE 136 (574)
Q Consensus 65 klvlmSATl--~~~~~~~~f~~~~~i~~~gr~~~v~------~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~ 136 (574)
++-+|+.|. ..+.|.+.+ +.+++.+|.- .|+. ..|. ...+...+.++.+...|. .+.+|||...+.
T Consensus 364 kLsGMTGTa~t~~~Ef~~iY-~l~Vv~IPtn-kp~~R~d~~d~iy~--t~~~k~~Aii~ei~~~~~--~GrPVLVgt~sI 437 (764)
T PRK12326 364 TVCGMTGTAVAAGEQLRQFY-DLGVSVIPPN-KPNIREDEADRVYA--TAAEKNDAIVEHIAEVHE--TGQPVLVGTHDV 437 (764)
T ss_pred hheeecCCChhHHHHHHHHh-CCcEEECCCC-CCceeecCCCceEe--CHHHHHHHHHHHHHHHHH--cCCCEEEEeCCH
Confidence 788999998 356777766 4667777653 2321 2222 235566777788888774 688999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCC-------
Q 008209 137 EEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTID------- 209 (574)
Q Consensus 137 ~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip------- 209 (574)
++.+.+.+.|.+ .++..-.|.+.-...|-.-|-+.-.. -.|.||||+|.+|.||.
T Consensus 438 ~~SE~ls~~L~~---------~gI~h~vLNAk~~~~EA~IIa~AG~~---------gaVTIATNMAGRGTDIkLg~~~~~ 499 (764)
T PRK12326 438 AESEELAERLRA---------AGVPAVVLNAKNDAEEARIIAEAGKY---------GAVTVSTQMAGRGTDIRLGGSDEA 499 (764)
T ss_pred HHHHHHHHHHHh---------CCCcceeeccCchHhHHHHHHhcCCC---------CcEEEEecCCCCccCeecCCCccc
Confidence 999999999986 23334445554333332223233333 46999999999999886
Q ss_pred --------CeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC-CCeEEeeccccc
Q 008209 210 --------GIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ-PGKCFRLYTEKS 267 (574)
Q Consensus 210 --------~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~-~G~~~rl~t~~~ 267 (574)
|=-+||=+. .+-|.--=.|=.|||||.| ||.+--+.|-++
T Consensus 500 ~~~~V~~~GGLhVIgTe------------------rheSrRID~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 500 DRDRVAELGGLHVIGTG------------------RHRSERLDNQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred chHHHHHcCCcEEEecc------------------CCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 112455222 3566667789999999999 687766555443
No 129
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.42 E-value=8.4e-06 Score=92.17 Aligned_cols=104 Identities=12% Similarity=0.080 Sum_probs=68.4
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHH---------------------HHhhhcCCCCCC
Q 008209 126 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPA---------------------MQQKIFEPAPPP 184 (574)
Q Consensus 126 ~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~---------------------~q~~v~~~~~~g 184 (574)
+++.+||+.++..+..+.+.|.+..... .+...+.+++.-..+ ....+.+.|+..
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~----~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~ 589 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEK----FEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE 589 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccc----cCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC
Confidence 5899999999999999998887643221 112233444432221 112344444431
Q ss_pred CCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCC-CCCe
Q 008209 185 SKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGK 258 (574)
Q Consensus 185 ~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~-~~G~ 258 (574)
...+|+|.++.+-||+|.|.+.+++ ...|..-..++|..||+-|. .+|+
T Consensus 590 ------~~~~ilIVvdmllTGFDaP~l~tLy-------------------ldKplk~h~LlQai~R~nR~~~~~K 639 (667)
T TIGR00348 590 ------ENPKLLIVVDMLLTGFDAPILNTLY-------------------LDKPLKYHGLLQAIARTNRIDGKDK 639 (667)
T ss_pred ------CCceEEEEEcccccccCCCccceEE-------------------EeccccccHHHHHHHHhccccCCCC
Confidence 1279999999999999999998776 11244445789999999995 4443
No 130
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.36 E-value=5.5e-06 Score=93.58 Aligned_cols=161 Identities=23% Similarity=0.277 Sum_probs=104.4
Q ss_pred cEEEEccCCC--HHHHHhhhCCCCeEEeCCeeecee------EEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCH
Q 008209 65 KLVVMSATLE--AEKFQGYFYGAPLMKVPGRLHPVE------IFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGE 136 (574)
Q Consensus 65 klvlmSATl~--~~~~~~~f~~~~~i~~~gr~~~v~------~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~ 136 (574)
++.+|+.|.- .+.|.+.+ +.+++.+|... |+. ..|. .......+.+..+...|. .+.+|||-+.+.
T Consensus 505 kl~GmTGTa~~e~~Ef~~iY-~l~v~~iPt~k-p~~r~d~~d~iy~--t~~~k~~ai~~ei~~~~~--~grPvLigt~si 578 (970)
T PRK12899 505 KLAGMTGTAITESREFKEIY-NLYVLQVPTFK-PCLRIDHNDEFYM--TEREKYHAIVAEIASIHR--KGNPILIGTESV 578 (970)
T ss_pred hhcccCCCCHHHHHHHHHHh-CCCEEECCCCC-CceeeeCCCcEec--CHHHHHHHHHHHHHHHHh--CCCCEEEEeCcH
Confidence 7888888883 44555544 46777776532 211 1232 234667777888888875 467999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCe-----
Q 008209 137 EEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGI----- 211 (574)
Q Consensus 137 ~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v----- 211 (574)
+..+.++..|.+ .++..-.|++.-...|-.-|-+.-.. -.|.||||+|.+|.||.==
T Consensus 579 ~~se~ls~~L~~---------~gi~h~vLNak~~~~Ea~iia~AG~~---------g~VTIATNmAGRGTDIkl~~~v~~ 640 (970)
T PRK12899 579 EVSEKLSRILRQ---------NRIEHTVLNAKNHAQEAEIIAGAGKL---------GAVTVATNMAGRGTDIKLDEEAVA 640 (970)
T ss_pred HHHHHHHHHHHH---------cCCcceecccchhhhHHHHHHhcCCC---------CcEEEeeccccCCcccccCchHHh
Confidence 999999999976 23333344444222222223233332 4699999999999988511
Q ss_pred ---EEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC-CCeEEeeccccc
Q 008209 212 ---VYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ-PGKCFRLYTEKS 267 (574)
Q Consensus 212 ---~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~-~G~~~rl~t~~~ 267 (574)
-+||-+. .+-|.---.|=.|||||.| ||.+-.+.|-++
T Consensus 641 ~GGLhVIgTe------------------r~es~Rid~Ql~GRagRQGdpGss~f~lSlED 682 (970)
T PRK12899 641 VGGLYVIGTS------------------RHQSRRIDRQLRGRCARLGDPGAAKFFLSFED 682 (970)
T ss_pred cCCcEEEeec------------------cCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 2444222 3567777889999999999 688766655433
No 131
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.29 E-value=5.7e-06 Score=93.79 Aligned_cols=159 Identities=24% Similarity=0.331 Sum_probs=102.4
Q ss_pred cEEEEccCCC--HHHHHhhhCCCCeEEeCCeeece------eEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCH
Q 008209 65 KLVVMSATLE--AEKFQGYFYGAPLMKVPGRLHPV------EIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGE 136 (574)
Q Consensus 65 klvlmSATl~--~~~~~~~f~~~~~i~~~gr~~~v------~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~ 136 (574)
|+-+|+.|.. ...|.+.+ +..|+.||.- .|+ +..|. .......+.+..+...|. .+.+|||-..|.
T Consensus 565 kLsGMTGTA~tea~Ef~~IY-~L~Vv~IPTn-rP~~R~D~~D~vy~--t~~eK~~Aii~ei~~~~~--~GrPVLVGT~SV 638 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIY-KLDVVVIPTN-RPIARKDKEDLVYK--TKREKYNAVIEEITELSE--AGRPVLVGTTSV 638 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHh-CCCEEECCCC-CCcceecCCCeEec--CHHHHHHHHHHHHHHHHH--CCCCEEEEeCcH
Confidence 6777888873 44555544 4667777653 232 12232 234556778888888874 688999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCC-------
Q 008209 137 EEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTID------- 209 (574)
Q Consensus 137 ~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip------- 209 (574)
+.-+.+.+.|... ++.--.|.+.....|-.-|-++-.. -.|-||||+|.||-||.
T Consensus 639 e~SE~lS~~L~~~---------gI~H~VLNAK~h~~EAeIVA~AG~~---------GaVTIATNMAGRGTDIkLg~~V~e 700 (1112)
T PRK12901 639 EISELLSRMLKMR---------KIPHNVLNAKLHQKEAEIVAEAGQP---------GTVTIATNMAGRGTDIKLSPEVKA 700 (1112)
T ss_pred HHHHHHHHHHHHc---------CCcHHHhhccchhhHHHHHHhcCCC---------CcEEEeccCcCCCcCcccchhhHH
Confidence 9999999999762 2222223333223333333333333 36999999999999986
Q ss_pred -CeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC-CCeEEeeccc
Q 008209 210 -GIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ-PGKCFRLYTE 265 (574)
Q Consensus 210 -~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~-~G~~~rl~t~ 265 (574)
|=-+||-+. .+-|+---.|=.|||||.| ||.+--+.|-
T Consensus 701 ~GGL~VIgTe------------------rheSrRID~QLrGRaGRQGDPGsS~f~lSL 740 (1112)
T PRK12901 701 AGGLAIIGTE------------------RHESRRVDRQLRGRAGRQGDPGSSQFYVSL 740 (1112)
T ss_pred cCCCEEEEcc------------------CCCcHHHHHHHhcccccCCCCCcceEEEEc
Confidence 223555332 3567777789999999999 6876554443
No 132
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.27 E-value=2.8e-05 Score=84.67 Aligned_cols=119 Identities=18% Similarity=0.260 Sum_probs=90.4
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccccc
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAE 203 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae 203 (574)
+.+..||+|-. ...+...|+..+. ..++..+-+-|+++.++|...++.|.... ..+--.+++|-...
T Consensus 485 ~~GhRVLIFSQ----mt~mLDILeDyc~-----~R~y~ycRiDGSt~~eeR~~aI~~fn~~~----s~~FiFlLSTRAGG 551 (971)
T KOG0385|consen 485 EQGHRVLIFSQ----MTRMLDILEDYCM-----LRGYEYCRLDGSTSHEEREDAIEAFNAPP----SEKFIFLLSTRAGG 551 (971)
T ss_pred hCCCeEEEeHH----HHHHHHHHHHHHH-----hcCceeEeecCCCCcHHHHHHHHhcCCCC----cceEEEEEeccccc
Confidence 35668888843 3444445544332 25788999999999999999888775432 11245678999999
Q ss_pred ccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEEeecccccccc
Q 008209 204 TSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNN 270 (574)
Q Consensus 204 ~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl~t~~~~~~ 270 (574)
-||++-..++|| .||++.. |-.--+|++|+-|.|-..|=++|||.|+...++
T Consensus 552 LGINL~aADtVI--------lyDSDWN-------PQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe 603 (971)
T KOG0385|consen 552 LGINLTAADTVI--------LYDSDWN-------PQVDLQAMDRAHRIGQKKPVVVYRLITENTVEE 603 (971)
T ss_pred cccccccccEEE--------EecCCCC-------chhhhHHHHHHHhhCCcCceEEEEEeccchHHH
Confidence 999999999999 5666654 666679999999999999999999999977754
No 133
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.24 E-value=8.6e-06 Score=91.93 Aligned_cols=167 Identities=22% Similarity=0.264 Sum_probs=101.8
Q ss_pred cEEEEccCCC--HHHHHhhhCCCCeEEeCCeeece------eEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCH
Q 008209 65 KLVVMSATLE--AEKFQGYFYGAPLMKVPGRLHPV------EIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGE 136 (574)
Q Consensus 65 klvlmSATl~--~~~~~~~f~~~~~i~~~gr~~~v------~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~ 136 (574)
|+-+|+.|.. .+.|.+.+ +.+++.||... |+ +..|. .....+.+.++.+...|. .+.+|||-..|.
T Consensus 386 kLsGMTGTa~te~~Ef~~iY-~l~Vv~IPTnk-P~~R~D~~d~vy~--t~~eK~~Ai~~ei~~~~~--~GrPVLVGT~SV 459 (913)
T PRK13103 386 KLSGMTGTADTEAFEFRQIY-GLDVVVIPPNK-PLARKDFNDLVYL--TAEEKYAAIITDIKECMA--LGRPVLVGTATI 459 (913)
T ss_pred hhccCCCCCHHHHHHHHHHh-CCCEEECCCCC-CcccccCCCeEEc--CHHHHHHHHHHHHHHHHh--CCCCEEEEeCCH
Confidence 6788888873 44555554 46777776532 22 12232 234566777788887774 688999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCC---CeE-
Q 008209 137 EEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTID---GIV- 212 (574)
Q Consensus 137 ~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip---~v~- 212 (574)
+..+.+.+.|.+. ++..-.|.+.-...|-.-|-+.-.. -.|.||||+|.+|-||- +..
T Consensus 460 e~SE~ls~~L~~~---------gi~h~VLNAk~~~~EA~IIa~AG~~---------GaVTIATNMAGRGTDIkLg~n~~~ 521 (913)
T PRK13103 460 ETSEHMSNLLKKE---------GIEHKVLNAKYHEKEAEIIAQAGRP---------GALTIATNMAGRGTDILLGGNWEV 521 (913)
T ss_pred HHHHHHHHHHHHc---------CCcHHHhccccchhHHHHHHcCCCC---------CcEEEeccCCCCCCCEecCCchHH
Confidence 9999999999862 2222223333223333333333333 46999999999999983 000
Q ss_pred -------------------------EEEcCCcccceeecCCCCcceee-eeeccHhhHHHhcccCCCCC-CCeEEeeccc
Q 008209 213 -------------------------YVIDPGFAKQKVYNPRVRVESLL-VSPISKASAHQRSGRAGRTQ-PGKCFRLYTE 265 (574)
Q Consensus 213 -------------------------~VID~g~~k~~~y~~~~~~~~l~-~~~is~~~~~QR~GRaGR~~-~G~~~rl~t~ 265 (574)
-|.. .-|+..+. ..+-|+--=.|=.|||||.| ||.+--+.|-
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~e~V~e-----------~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSl 590 (913)
T PRK13103 522 EVAALENPTPEQIAQIKADWQKRHQQVIE-----------AGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSL 590 (913)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhHHHHHHH-----------cCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEc
Confidence 0111 11222221 13556666689999999999 6877655554
Q ss_pred c
Q 008209 266 K 266 (574)
Q Consensus 266 ~ 266 (574)
+
T Consensus 591 E 591 (913)
T PRK13103 591 E 591 (913)
T ss_pred C
Confidence 3
No 134
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.17 E-value=2.8e-06 Score=78.69 Aligned_cols=71 Identities=23% Similarity=0.248 Sum_probs=48.9
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcc-hHHHHHHHHHHHhhCCCccEEEEccCCCHHHHH
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLA-TDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQ 79 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~-~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~ 79 (574)
..+|+|+|+++|++.+.... .+.++++||+||+|..+.. ..-.+..+...+...++.++|+||||+. ..+.
T Consensus 95 ~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~ 167 (169)
T PF00270_consen 95 QADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLP-SNVE 167 (169)
T ss_dssp TSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSST-HHHH
T ss_pred cccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCC-hhHh
Confidence 47899999999999998742 4666999999999963332 1112222222232334799999999998 5544
No 135
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.10 E-value=0.00019 Score=82.88 Aligned_cols=132 Identities=12% Similarity=0.117 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCC
Q 008209 107 RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSK 186 (574)
Q Consensus 107 ~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~ 186 (574)
++|.+.....+..+. ..+|.+||++||.+..+.+++.|... ...++.-..+.+ +.++.+.|..+.
T Consensus 630 ~~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~---------~~~~l~Qg~~~~---~~~l~~~F~~~~- 694 (820)
T PRK07246 630 EVYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW---------QVSHLAQEKNGT---AYNIKKRFDRGE- 694 (820)
T ss_pred HHHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc---------CCcEEEeCCCcc---HHHHHHHHHcCC-
Confidence 456666666666655 46899999999999999999888641 223333222223 233555566555
Q ss_pred CCCCCCcEEEEecccccccccCCC--eEEEEcCCcccceeecCCC-------------Ccceee--eeeccHhhHHHhcc
Q 008209 187 EGGPPGRKIVVSTNIAETSLTIDG--IVYVIDPGFAKQKVYNPRV-------------RVESLL--VSPISKASAHQRSG 249 (574)
Q Consensus 187 ~~~~~~~kvivaT~iae~gitip~--v~~VID~g~~k~~~y~~~~-------------~~~~l~--~~~is~~~~~QR~G 249 (574)
..|+++|...--|||+|+ ...||=.++ +.-.|.. |.+... ..|-..-...|-+|
T Consensus 695 ------~~vLlG~~sFwEGVD~p~~~~~~viI~kL---PF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~G 765 (820)
T PRK07246 695 ------QQILLGLGSFWEGVDFVQADRMIEVITRL---PFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIG 765 (820)
T ss_pred ------CeEEEecchhhCCCCCCCCCeEEEEEecC---CCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhc
Confidence 789999999999999973 444443443 3322211 112221 22444566889999
Q ss_pred cCCCCC--CCeEEee
Q 008209 250 RAGRTQ--PGKCFRL 262 (574)
Q Consensus 250 RaGR~~--~G~~~rl 262 (574)
|.=|.. .|..+-+
T Consensus 766 RLIRs~~D~Gvv~il 780 (820)
T PRK07246 766 RTMRREDQKSAVLIL 780 (820)
T ss_pred ccccCCCCcEEEEEE
Confidence 999988 4776654
No 136
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.06 E-value=9.3e-05 Score=83.41 Aligned_cols=121 Identities=19% Similarity=0.197 Sum_probs=77.0
Q ss_pred cEEEEccCCC--HHHHHhhhCCCCeEEeCCeeecee------EEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCH
Q 008209 65 KLVVMSATLE--AEKFQGYFYGAPLMKVPGRLHPVE------IFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGE 136 (574)
Q Consensus 65 klvlmSATl~--~~~~~~~f~~~~~i~~~gr~~~v~------~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~ 136 (574)
++.+|+.|.. .+.|.+.+ +..++.+|... |+. ..|. ...+...+.+..+...|. .+.+|||-+.|.
T Consensus 361 kL~GMTGTa~te~~Ef~~iY-~l~vv~IPtnk-p~~R~d~~d~v~~--t~~~K~~AI~~ei~~~~~--~grPVLIgT~SI 434 (870)
T CHL00122 361 KLSGMTGTAKTEELEFEKIY-NLEVVCIPTHR-PMLRKDLPDLIYK--DELSKWRAIADECLQMHQ--TGRPILIGTTTI 434 (870)
T ss_pred hhcccCCCCHHHHHHHHHHh-CCCEEECCCCC-CccceeCCCeEEe--CHHHHHHHHHHHHHHHHh--cCCCEEEeeCCH
Confidence 7888999983 44555555 46777776532 221 1222 223455667777777664 688999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCC--CHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCC
Q 008209 137 EEIEDACRKITKEITNMGDQVGPVKVVPLYSTL--PPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTID 209 (574)
Q Consensus 137 ~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l--~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip 209 (574)
+..+.+.+.|.+ .++..-.|++.- ...|-.-|-++-.. -.|.||||+|.||.||-
T Consensus 435 e~SE~ls~~L~~---------~gi~h~vLNAk~~~~~~EA~IIA~AG~~---------G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 435 EKSELLSQLLKE---------YRLPHQLLNAKPENVRRESEIVAQAGRK---------GSITIATNMAGRGTDII 491 (870)
T ss_pred HHHHHHHHHHHH---------cCCccceeeCCCccchhHHHHHHhcCCC---------CcEEEeccccCCCcCee
Confidence 999999999976 233333344431 12333333333333 46999999999998874
No 137
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.03 E-value=0.00011 Score=80.51 Aligned_cols=175 Identities=20% Similarity=0.283 Sum_probs=122.3
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccc
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 204 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~ 204 (574)
.+..+|+|-.++..+.-+...|.. ..++..+.+-|..+...|....+.|.++. ..--.+++|-+-.-
T Consensus 545 qg~rvllFsqs~~mLdilE~fL~~--------~~~ysylRmDGtT~~~~R~~lVd~Fne~~-----s~~VFLLTTrvGGL 611 (923)
T KOG0387|consen 545 QGDRVLLFSQSRQMLDILESFLRR--------AKGYSYLRMDGTTPAALRQKLVDRFNEDE-----SIFVFLLTTRVGGL 611 (923)
T ss_pred CCCEEEEehhHHHHHHHHHHHHHh--------cCCceEEEecCCCccchhhHHHHhhcCCC-----ceEEEEEEeccccc
Confidence 456899999999888877777763 25788999999999999999999998665 22455678889999
Q ss_pred cccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEEeeccccccccccCCCCcchhccCC
Q 008209 205 SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSN 284 (574)
Q Consensus 205 gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl~t~~~~~~~l~~~~~pei~~~~ 284 (574)
|+|+-+..-|| .|||... |.+-.++.-|+=|-|-...=.+|||.+....++..- .-.|.+..
T Consensus 612 GlNLTgAnRVI--------IfDPdWN-------PStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY---~rQI~Kq~ 673 (923)
T KOG0387|consen 612 GLNLTGANRVI--------IFDPDWN-------PSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIY---HRQIFKQF 673 (923)
T ss_pred ccccccCceEE--------EECCCCC-------CccchHHHHHHHhhcCccceEEEEEecCCcHHHHHH---HHHHHHHH
Confidence 99999888877 6788766 777778888888888888788999999877743211 13344444
Q ss_pred chhhHHHHhhcCCCCccccCCCCCCcHHHHHHHHHHHHHcCCccCCCCcChhhhhhccCC
Q 008209 285 LANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFP 344 (574)
Q Consensus 285 l~~~~L~l~~~~~~~~~~~~~l~~P~~~~l~~al~~L~~lgald~~~~lT~lG~~~~~lp 344 (574)
|..-+|.- ...-.|+. ..-+..|..++---.+|..|+.|-......
T Consensus 674 Ltn~il~~-------p~q~RfF~-------~~dl~dLFsl~~~G~~~~~te~~~~~~~~~ 719 (923)
T KOG0387|consen 674 LTNRILKN-------PEQRRFFK-------GNDLHDLFSLKDFGDDGESTETSSKEVHRN 719 (923)
T ss_pred HHHHHhcC-------HHHhhhcc-------cccHHHHhCCCCCCcCcchhhhhhhhhhhh
Confidence 55544321 11112221 122556666665444677777776665554
No 138
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=97.93 E-value=4.3e-05 Score=79.52 Aligned_cols=118 Identities=17% Similarity=0.217 Sum_probs=86.4
Q ss_pred HHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCC
Q 008209 113 AIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPG 192 (574)
Q Consensus 113 ~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~ 192 (574)
+++-++..|.. .+.+||||-.......+.+-.|.+ -.+||..++.||.+|++.|.-+. .
T Consensus 531 aCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~K--------------pfIYG~Tsq~ERm~ILqnFq~n~------~ 589 (776)
T KOG1123|consen 531 ACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLGK--------------PFIYGPTSQNERMKILQNFQTNP------K 589 (776)
T ss_pred HHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCC--------------ceEECCCchhHHHHHHHhcccCC------c
Confidence 34556666763 678899998887666655555532 24789999999999999998654 3
Q ss_pred cEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCC-------CeEEeeccc
Q 008209 193 RKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQP-------GKCFRLYTE 265 (574)
Q Consensus 193 ~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~-------G~~~rl~t~ 265 (574)
.+-|+-.-++.+|+|+|..++.|... ..--|+-+-.||.||.=|... ...|.|.++
T Consensus 590 vNTIFlSKVgDtSiDLPEAnvLIQIS-----------------SH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~ 652 (776)
T KOG1123|consen 590 VNTIFLSKVGDTSIDLPEANVLIQIS-----------------SHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSK 652 (776)
T ss_pred cceEEEeeccCccccCCcccEEEEEc-----------------ccccchHHHHHHHHHHHHHhhcCccccceeeeeeeec
Confidence 77788889999999999999999311 113466778899999877663 346667666
Q ss_pred ccc
Q 008209 266 KSF 268 (574)
Q Consensus 266 ~~~ 268 (574)
+..
T Consensus 653 DTq 655 (776)
T KOG1123|consen 653 DTQ 655 (776)
T ss_pred chH
Confidence 554
No 139
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=97.88 E-value=9.4e-05 Score=84.50 Aligned_cols=227 Identities=13% Similarity=0.109 Sum_probs=143.8
Q ss_pred CCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCC----cchHHHHHHHHHHHh-hCCCccEEEEccCC-CHHHHHhhh
Q 008209 9 LGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERT----LATDVLFGLLKEVLK-NRPDLKLVVMSATL-EAEKFQGYF 82 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~----~~~d~ll~~lk~~~~-~~~~~klvlmSATl-~~~~~~~~f 82 (574)
.+|+++||...-.. + ....+++.|.||.|.=| ...+.++. .+.+.. .-+++|+|.+|..+ ++..+ -++
T Consensus 1235 ~~vii~tpe~~d~l-q---~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~lana~d~-ig~ 1308 (1674)
T KOG0951|consen 1235 GQVIISTPEQWDLL-Q---SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKKIRVVALSSSLANARDL-IGA 1308 (1674)
T ss_pred cceEEechhHHHHH-h---hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhheeEEEeehhhccchhh-ccc
Confidence 68999999875222 2 56789999999999422 22333444 333322 34589999999988 67776 444
Q ss_pred CCCCeEEeC--CeeeceeEEeecCCchhHHH-------HHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHh--
Q 008209 83 YGAPLMKVP--GRLHPVEIFYTQEPERDYLE-------AAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEIT-- 151 (574)
Q Consensus 83 ~~~~~i~~~--gr~~~v~~~y~~~~~~~~~~-------~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~-- 151 (574)
..+.++..+ -|+.|.+++-.......+.. .....+.+. . ..+.+.+||+|+++.+..++.-+-....
T Consensus 1309 s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~-a-~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~ 1386 (1674)
T KOG0951|consen 1309 SSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRH-A-GNRKPAIVFLPTRKHARLVAVDLVTFSHAD 1386 (1674)
T ss_pred cccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHH-h-cCCCCeEEEeccchhhhhhhhccchhhccC
Confidence 455566543 46677666544332222211 112222222 1 4688999999999998877665532110
Q ss_pred ----------h----cCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcC
Q 008209 152 ----------N----MGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDP 217 (574)
Q Consensus 152 ----------~----~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~ 217 (574)
+ +.. .....|. |-+++..+|.-+-.-+..|. ..|.|...- -.|+....--+||
T Consensus 1387 ~~~~l~~~~e~~~~~l~e-~l~~gvg--~e~~s~~d~~iv~~l~e~g~-------i~v~v~s~~-~~~~~~~~~lVvv-- 1453 (1674)
T KOG0951|consen 1387 EPDYLLSELEECDETLRE-SLKHGVG--HEGLSSNDQEIVQQLFEAGA-------IQVCVMSRD-CYGTKLKAHLVVV-- 1453 (1674)
T ss_pred cHHHHHHHHhcchHhhhh-ccccccc--ccccCcchHHHHHHHHhcCc-------EEEEEEEcc-cccccccceEEEE--
Confidence 0 000 1122233 99999999888877777777 788776555 5676666555566
Q ss_pred CcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEEeecc
Q 008209 218 GFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYT 264 (574)
Q Consensus 218 g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl~t 264 (574)
.....||.+... ..+.+.++..|++|+|.| .|.|+.+..
T Consensus 1454 --mgt~~ydg~e~~----~~~y~i~~ll~m~G~a~~--~~k~vi~~~ 1492 (1674)
T KOG0951|consen 1454 --MGTQYYDGKEHS----YEDYPIAELLQMVGLASG--AGKCVIMCH 1492 (1674)
T ss_pred --ecceeecccccc----cccCchhHHHHHhhhhcC--CccEEEEec
Confidence 667889987764 347788899999999999 466665533
No 140
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.87 E-value=5.5e-05 Score=67.24 Aligned_cols=69 Identities=20% Similarity=0.182 Sum_probs=50.2
Q ss_pred cccCCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCC
Q 008209 5 FCVLLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 74 (574)
Q Consensus 5 ~~~~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~ 74 (574)
.+.++.|.+||.+.+.+.+++...+.+|++||+||+|--+..+-...++++..... ...++|.||||..
T Consensus 69 ~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~-g~~~~i~mTATPP 137 (148)
T PF07652_consen 69 HFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES-GEAKVIFMTATPP 137 (148)
T ss_dssp --SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT-TS-EEEEEESS-T
T ss_pred ccCCCcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhc-cCeeEEEEeCCCC
Confidence 34567899999999999988855689999999999997666666666777766443 4689999999964
No 141
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.85 E-value=0.00037 Score=78.69 Aligned_cols=183 Identities=18% Similarity=0.207 Sum_probs=121.6
Q ss_pred CCCeEEEchHHHHHHHhcCCCCCCccEEEEecCC---CCCcchHHHHHHH----------------HHHHh---------
Q 008209 8 LLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAH---ERTLATDVLFGLL----------------KEVLK--------- 59 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~H---eR~~~~d~ll~~l----------------k~~~~--------- 59 (574)
..+|.++|...|......-.. -++++|++|.|| ..+-+.|-+|.++ +..+.
T Consensus 181 dfdIlitTs~FL~k~~e~L~~-~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~ 259 (1187)
T COG1110 181 DFDILITTSQFLSKRFEELSK-LKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVR 259 (1187)
T ss_pred CccEEEEeHHHHHhhHHHhcc-cCCCEEEEccHHHHHhccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 378999999999877653222 379999999999 4445555544332 11111
Q ss_pred -------------hCCCccEEEEccCCC-----HHHHHhhhCCCCeEEeCC-e--eeceeEEeecCCchhHHHHHHHHHH
Q 008209 60 -------------NRPDLKLVVMSATLE-----AEKFQGYFYGAPLMKVPG-R--LHPVEIFYTQEPERDYLEAAIRTVV 118 (574)
Q Consensus 60 -------------~~~~~klvlmSATl~-----~~~~~~~f~~~~~i~~~g-r--~~~v~~~y~~~~~~~~~~~~~~~~~ 118 (574)
+...-.+|++|||.. ...|.+.++ +.+.+ . ...+...|...+ ...++.
T Consensus 260 e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg----FevG~~~~~LRNIvD~y~~~~-------~~e~~~ 328 (1187)
T COG1110 260 EELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG----FEVGSGGEGLRNIVDIYVESE-------SLEKVV 328 (1187)
T ss_pred HHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC----CccCccchhhhheeeeeccCc-------cHHHHH
Confidence 113457999999984 356666664 11111 1 122334444432 223334
Q ss_pred HHHhcCCCCCEEEEcCC---HHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEE
Q 008209 119 QIHMCEPSGDILVFLTG---EEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKI 195 (574)
Q Consensus 119 ~i~~~~~~g~iLVFl~~---~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kv 195 (574)
.+.+ .-+...|||+|. ++.++++++.|+. .++++...|+. ..+.++.|..|. ..|
T Consensus 329 elvk-~lG~GgLIfV~~d~G~e~aeel~e~Lr~---------~Gi~a~~~~a~-----~~~~le~F~~Ge-------idv 386 (1187)
T COG1110 329 ELVK-KLGDGGLIFVPIDYGREKAEELAEYLRS---------HGINAELIHAE-----KEEALEDFEEGE-------VDV 386 (1187)
T ss_pred HHHH-HhCCCeEEEEEcHHhHHHHHHHHHHHHh---------cCceEEEeecc-----chhhhhhhccCc-------eeE
Confidence 4433 225578999999 8888999999886 67889888884 256788899998 888
Q ss_pred EEec----ccccccccCC-CeEEEEcCCccccee
Q 008209 196 VVST----NIAETSLTID-GIVYVIDPGFAKQKV 224 (574)
Q Consensus 196 ivaT----~iae~gitip-~v~~VID~g~~k~~~ 224 (574)
+|.. +++-+|||+| -++|+|=.|..|.+.
T Consensus 387 LVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~rf 420 (1187)
T COG1110 387 LVGVASYYGVLVRGLDLPHRIRYAVFYGVPKFRF 420 (1187)
T ss_pred EEEecccccceeecCCchhheeEEEEecCCceee
Confidence 8874 6888999999 478999999876544
No 142
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=97.79 E-value=6e-05 Score=72.25 Aligned_cols=65 Identities=28% Similarity=0.210 Sum_probs=46.1
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCC
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLE 74 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~ 74 (574)
+.+|+|+|++.|++.+.+.. .+.+++++|+||+|.-. +..+. ..+..+.. ...+.++++||||+.
T Consensus 119 ~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~-~~~~~-~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 119 GPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRML-DMGFE-DQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred CCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhh-ccChH-HHHHHHHHhCCcccEEEEEeccCC
Confidence 56899999999999887655 58899999999999511 11111 11222222 345899999999996
No 143
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.69 E-value=0.00045 Score=78.01 Aligned_cols=121 Identities=17% Similarity=0.173 Sum_probs=75.9
Q ss_pred cEEEEccCCC--HHHHHhhhCCCCeEEeCCeeecee------EEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCH
Q 008209 65 KLVVMSATLE--AEKFQGYFYGAPLMKVPGRLHPVE------IFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGE 136 (574)
Q Consensus 65 klvlmSATl~--~~~~~~~f~~~~~i~~~gr~~~v~------~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~ 136 (574)
|+-+|+.|.. .+.|.+.+ +.+++.+|... |+. ..|. .......+.++.+...|. .+.+|||-..|.
T Consensus 376 kLsGMTGTa~te~~Ef~~iY-~l~Vv~IPTnk-P~~R~d~~d~vy~--t~~~K~~Ai~~ei~~~~~--~GrPVLIgT~SV 449 (939)
T PRK12902 376 KLAGMTGTAKTEEVEFEKTY-KLEVTVIPTNR-PRRRQDWPDQVYK--TEIAKWRAVANETAEMHK--QGRPVLVGTTSV 449 (939)
T ss_pred hhcccCCCCHHHHHHHHHHh-CCcEEEcCCCC-CeeeecCCCeEEc--CHHHHHHHHHHHHHHHHh--CCCCEEEeeCCH
Confidence 7888888873 44555554 46777776532 321 1222 224556677777777774 588999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCC-CC-HHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCC
Q 008209 137 EEIEDACRKITKEITNMGDQVGPVKVVPLYST-LP-PAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTID 209 (574)
Q Consensus 137 ~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~-l~-~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip 209 (574)
+..+.+.+.|.+ .++..-.|++. .. ..|-.-|-+.-.. -.|-||||+|.+|-||-
T Consensus 450 e~SE~ls~~L~~---------~gi~h~vLNAk~~~~~~EA~IIa~AG~~---------GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 450 EKSELLSALLQE---------QGIPHNLLNAKPENVEREAEIVAQAGRK---------GAVTIATNMAGRGTDII 506 (939)
T ss_pred HHHHHHHHHHHH---------cCCchheeeCCCcchHhHHHHHHhcCCC---------CcEEEeccCCCCCcCEe
Confidence 999999999986 22222223332 11 2222222233333 46999999999998874
No 144
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=97.61 E-value=0.00093 Score=69.84 Aligned_cols=167 Identities=20% Similarity=0.253 Sum_probs=105.7
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccccc
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAE 203 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae 203 (574)
.++.+++||+.-..-.+.+...+.+ .++..+-+.|..++.+|....+.|.... ..+--|++-..+.
T Consensus 490 ~~~~KflVFaHH~~vLd~Iq~~~~~---------r~vg~IRIDGst~s~~R~ll~qsFQ~se-----ev~VAvlsItA~g 555 (689)
T KOG1000|consen 490 APPRKFLVFAHHQIVLDTIQVEVNK---------RKVGSIRIDGSTPSHRRTLLCQSFQTSE-----EVRVAVLSITAAG 555 (689)
T ss_pred CCCceEEEEehhHHHHHHHHHHHHH---------cCCCeEEecCCCCchhHHHHHHHhcccc-----ceEEEEEEEeecc
Confidence 3567899999988877777777765 5677888899999999988877776543 2256678888899
Q ss_pred ccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCC-CeEEeeccccccccccCCCCcchhcc
Q 008209 204 TSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQP-GKCFRLYTEKSFNNDLQPQTYPEILR 282 (574)
Q Consensus 204 ~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~-G~~~rl~t~~~~~~~l~~~~~pei~~ 282 (574)
+|+|+...+.||=. +-.|||.- .-++.-|+-|.|-+.. ++.| |..+... .++..|
T Consensus 556 vGLt~tAa~~VVFa----EL~wnPgv-----------LlQAEDRaHRiGQkssV~v~y-lvAKgT~----Ddy~Wp---- 611 (689)
T KOG1000|consen 556 VGLTLTAASVVVFA----ELHWNPGV-----------LLQAEDRAHRIGQKSSVFVQY-LVAKGTA----DDYMWP---- 611 (689)
T ss_pred cceeeeccceEEEE----EecCCCce-----------EEechhhhhhccccceeeEEE-EEecCch----HHHHHH----
Confidence 99999999999932 23444432 2355667777776665 4443 3333222 111111
Q ss_pred CCchhhHHHHhhcCCCCccccCCCCCCcHHHHHHHHHHHHHcCCccCCCCcChhhhhhccCCCCHHHHHHHHhccC
Q 008209 283 SNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPK 358 (574)
Q Consensus 283 ~~l~~~~L~l~~~~~~~~~~~~~l~~P~~~~l~~al~~L~~lgald~~~~lT~lG~~~~~lpl~p~~~~~ll~~~~ 358 (574)
.+.+-++.|...|.=..+++-|+.|-....=|-.|.++..++.+..
T Consensus 612 ------------------------------~l~~KL~vl~s~gl~s~~~~~~e~~g~s~~~~aq~~i~~~~~k~~~ 657 (689)
T KOG1000|consen 612 ------------------------------MLQQKLDVLGSVGLSSDTFRTAEKMGLSFNDAAQPGIAEYLKKTPD 657 (689)
T ss_pred ------------------------------HHHHHHHHHhhcccCcccceeecccceeecCcccchHHHHHhhCCC
Confidence 2344455555555544455555555555555666666666665543
No 145
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.34 E-value=0.011 Score=62.90 Aligned_cols=230 Identities=11% Similarity=0.047 Sum_probs=141.1
Q ss_pred CCCeEEEchHHHHHHHhc------C-CCCCCccEEEEecCCC-CCcchHHHHHHHHHHHhhCC-----------------
Q 008209 8 LLGGRYLTDGMLLREAMT------D-PLLERYKVIVLDEAHE-RTLATDVLFGLLKEVLKNRP----------------- 62 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~------~-~~L~~~~~vIiDE~He-R~~~~d~ll~~lk~~~~~~~----------------- 62 (574)
+++|++++|==|-..+.. | ..|+.+.++|||.+|- -+.++|-+..+++.+-....
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg 210 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDG 210 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcC
Confidence 589999999555444432 1 1599999999999992 23456666666654322110
Q ss_pred ----CccEEEEccCCCHH---HHHhhhCCC-CeEEe----C--C----eeeceeEEeecCCch-------hHHHHHHHHH
Q 008209 63 ----DLKLVVMSATLEAE---KFQGYFYGA-PLMKV----P--G----RLHPVEIFYTQEPER-------DYLEAAIRTV 117 (574)
Q Consensus 63 ----~~klvlmSATl~~~---~~~~~f~~~-~~i~~----~--g----r~~~v~~~y~~~~~~-------~~~~~~~~~~ 117 (574)
=.|.|++|+..+++ .|.+++.+. ..+.+ + | -..++...|...+.. .-+.--...+
T Consensus 211 ~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~i 290 (442)
T PF06862_consen 211 QAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKI 290 (442)
T ss_pred cchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHH
Confidence 14899999998754 333433221 11111 1 1 112344444322111 1111122233
Q ss_pred HHHHh-cCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEE
Q 008209 118 VQIHM-CEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIV 196 (574)
Q Consensus 118 ~~i~~-~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvi 196 (574)
+-... ....+.+|||+|+.-+-.++-+.|.+ ..+..+.+|--.+..+..++=..|..|. ++|+
T Consensus 291 LP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~---------~~~sF~~i~EYts~~~isRAR~~F~~G~-------~~iL 354 (442)
T PF06862_consen 291 LPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKK---------ENISFVQISEYTSNSDISRARSQFFHGR-------KPIL 354 (442)
T ss_pred HHHhhhccCCCcEEEEecchhhhHHHHHHHHh---------cCCeEEEecccCCHHHHHHHHHHHHcCC-------ceEE
Confidence 33333 45688999999999999999999985 5677888887777777777777788888 9999
Q ss_pred Eeccccc--ccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCC----CCCCeEEeecccccc
Q 008209 197 VSTNIAE--TSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGR----TQPGKCFRLYTEKSF 268 (574)
Q Consensus 197 vaT~iae--~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR----~~~G~~~rl~t~~~~ 268 (574)
+-|-=+- +=..|-||+.||=+|+...+.|- ++...+.+.... ...+.|..||++-+.
T Consensus 355 L~TER~HFfrRy~irGi~~viFY~~P~~p~fY---------------~El~n~~~~~~~~~~~~~~~~~~~lysk~D~ 417 (442)
T PF06862_consen 355 LYTERFHFFRRYRIRGIRHVIFYGPPENPQFY---------------SELLNMLDESSGGEVDAADATVTVLYSKYDA 417 (442)
T ss_pred EEEhHHhhhhhceecCCcEEEEECCCCChhHH---------------HHHHhhhcccccccccccCceEEEEecHhHH
Confidence 9994332 23578899999977764443332 233333333322 225789999998654
No 146
>PRK14873 primosome assembly protein PriA; Provisional
Probab=97.33 E-value=0.005 Score=69.30 Aligned_cols=49 Identities=14% Similarity=0.132 Sum_probs=33.7
Q ss_pred CCCccEEEEecCC------CCCcchHHH-HHHHHHHHhhCCCccEEEEccCCCHHHHHh
Q 008209 29 LERYKVIVLDEAH------ERTLATDVL-FGLLKEVLKNRPDLKLVVMSATLEAEKFQG 80 (574)
Q Consensus 29 L~~~~~vIiDE~H------eR~~~~d~l-l~~lk~~~~~~~~~klvlmSATl~~~~~~~ 80 (574)
+.+.+.|||||=| +++...+.- +++++- ...+..+|+.|||...+.+..
T Consensus 255 ~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra---~~~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 255 VEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRA---HQHGCALLIGGHARTAEAQAL 310 (665)
T ss_pred cCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHH---HHcCCcEEEECCCCCHHHHHH
Confidence 6789999999999 444442221 122221 335899999999999888764
No 147
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.27 E-value=0.0008 Score=63.12 Aligned_cols=71 Identities=31% Similarity=0.269 Sum_probs=51.1
Q ss_pred CeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCC--cchHHHHHHHHHHHhhCCCccEEEEccCC--CHHHHH-hhhC
Q 008209 10 GGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERT--LATDVLFGLLKEVLKNRPDLKLVVMSATL--EAEKFQ-GYFY 83 (574)
Q Consensus 10 ~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~--~~~d~ll~~lk~~~~~~~~~klvlmSATl--~~~~~~-~~f~ 83 (574)
+++++|++.+.+.+.... ...+++++|+||+|... ...+.+..++.. ..+..++++||||+ +.+.+. .++.
T Consensus 107 ~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~---~~~~~~~v~~saT~~~~~~~~~~~~~~ 183 (201)
T smart00487 107 DILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKL---LPKNVQLLLLSATPPEEIENLLELFLN 183 (201)
T ss_pred CEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHh---CCccceEEEEecCCchhHHHHHHHhcC
Confidence 899999999999988765 57889999999999644 233333333332 24678999999999 455544 4443
No 148
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.26 E-value=0.0032 Score=74.17 Aligned_cols=138 Identities=17% Similarity=0.227 Sum_probs=88.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCC
Q 008209 107 RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSK 186 (574)
Q Consensus 107 ~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~ 186 (574)
++|.......+..+.. ..+|.+|||+||.+..+.+++.|..... ..++.++.- ++....+.++.+.|+.+.
T Consensus 734 ~~~~~~la~~i~~l~~-~~~g~~LVLFtSy~~l~~v~~~l~~~~~-----~~~~~ll~Q--g~~~~~r~~l~~~F~~~~- 804 (928)
T PRK08074 734 EEYIEEVAAYIAKIAK-ATKGRMLVLFTSYEMLKKTYYNLKNEEE-----LEGYVLLAQ--GVSSGSRARLTKQFQQFD- 804 (928)
T ss_pred HHHHHHHHHHHHHHHH-hCCCCEEEEECCHHHHHHHHHHHhhccc-----ccCceEEec--CCCCCCHHHHHHHHHhcC-
Confidence 4666666777777654 4678999999999999999999975321 122333332 332233455666666555
Q ss_pred CCCCCCcEEEEecccccccccCCCe--EEEEcCCcccceeecCC-------------CCcceee--eeeccHhhHHHhcc
Q 008209 187 EGGPPGRKIVVSTNIAETSLTIDGI--VYVIDPGFAKQKVYNPR-------------VRVESLL--VSPISKASAHQRSG 249 (574)
Q Consensus 187 ~~~~~~~kvivaT~iae~gitip~v--~~VID~g~~k~~~y~~~-------------~~~~~l~--~~~is~~~~~QR~G 249 (574)
..|+++|....-|||+||- +.||=.++. .-.|. .|.+... ..|...-...|-+|
T Consensus 805 ------~~iLlG~~sFwEGVD~pg~~l~~viI~kLP---F~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~G 875 (928)
T PRK08074 805 ------KAILLGTSSFWEGIDIPGDELSCLVIVRLP---FAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFG 875 (928)
T ss_pred ------CeEEEecCcccCccccCCCceEEEEEecCC---CCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhh
Confidence 7899999999999999974 666655542 21121 1111111 12445667789999
Q ss_pred cCCCCCC--CeEEee
Q 008209 250 RAGRTQP--GKCFRL 262 (574)
Q Consensus 250 RaGR~~~--G~~~rl 262 (574)
|.=|... |..+-|
T Consensus 876 RlIRs~~D~G~v~il 890 (928)
T PRK08074 876 RLIRTETDRGTVFVL 890 (928)
T ss_pred hhcccCCceEEEEEe
Confidence 9988773 766644
No 149
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.20 E-value=0.00098 Score=74.94 Aligned_cols=121 Identities=21% Similarity=0.227 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCC-eEEEEcCCCCCHHHHhhhcCCCCCCC
Q 008209 107 RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGP-VKVVPLYSTLPPAMQQKIFEPAPPPS 185 (574)
Q Consensus 107 ~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~-~~v~~lhs~l~~~~q~~v~~~~~~g~ 185 (574)
...+.+.+..+...|. .+.+|||-..+.+..+.+.+.|.+. ..++ +-....| ..|-..+-+.-..
T Consensus 412 ~~K~~Aiv~~I~~~~~--~gqPvLvgT~sie~SE~ls~~L~~~------~i~h~VLNAk~h----~~EA~Iia~AG~~-- 477 (822)
T COG0653 412 EEKFKAIVEDIKERHE--KGQPVLVGTVSIEKSELLSKLLRKA------GIPHNVLNAKNH----AREAEIIAQAGQP-- 477 (822)
T ss_pred HHHHHHHHHHHHHHHh--cCCCEEEcCcceecchhHHHHHHhc------CCCceeeccccH----HHHHHHHhhcCCC--
Confidence 3445566677777764 6889999999999999999988751 1122 2223334 3332333333333
Q ss_pred CCCCCCCcEEEEecccccccccCCCeE---EEEcCCcccceeecCCCCcceeeeee-ccHhhHHHhcccCCCCC-CCeE
Q 008209 186 KEGGPPGRKIVVSTNIAETSLTIDGIV---YVIDPGFAKQKVYNPRVRVESLLVSP-ISKASAHQRSGRAGRTQ-PGKC 259 (574)
Q Consensus 186 ~~~~~~~~kvivaT~iae~gitip~v~---~VID~g~~k~~~y~~~~~~~~l~~~~-is~~~~~QR~GRaGR~~-~G~~ 259 (574)
--|=+|||+|.+|-||-=-. .|.+.|- +..+.+.. -|+-==.|-.||+||.| ||..
T Consensus 478 -------gaVTiATNMAGRGTDIkLg~~~~~V~~lGG-----------L~VIgTERhESRRIDnQLRGRsGRQGDpG~S 538 (822)
T COG0653 478 -------GAVTIATNMAGRGTDIKLGGNPEFVMELGG-----------LHVIGTERHESRRIDNQLRGRAGRQGDPGSS 538 (822)
T ss_pred -------CccccccccccCCcccccCCCHHHHHHhCC-----------cEEEecccchhhHHHHHhhcccccCCCcchh
Confidence 35889999999999984222 2333221 11122212 22222248899999999 5754
No 150
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.16 E-value=0.00086 Score=58.99 Aligned_cols=66 Identities=32% Similarity=0.252 Sum_probs=45.4
Q ss_pred cCCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCC
Q 008209 7 VLLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL 73 (574)
Q Consensus 7 ~~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl 73 (574)
...+|+++|++.+.+.+..+. ....+++|||||+|.-......... ...........+++++|||+
T Consensus 78 ~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~-~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 78 GKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLG-LKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHH-HHHHhhCCccceEEEEeccC
Confidence 358899999999999887654 4678999999999942211111111 22233345678999999995
No 151
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=97.05 E-value=0.033 Score=62.81 Aligned_cols=93 Identities=20% Similarity=0.339 Sum_probs=68.8
Q ss_pred CCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeee
Q 008209 158 GPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVS 237 (574)
Q Consensus 158 ~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~ 237 (574)
.+..++.|||.++..+|+.+.+.|..... ...-.++||-...-||++=|..-|| .||+...
T Consensus 618 ~g~~~~rLdG~~~~~qRq~~vd~FN~p~~----~~~vfLlSsKAgg~GinLiGAsRli--------l~D~dWN------- 678 (776)
T KOG0390|consen 618 RGYEVLRLDGKTSIKQRQKLVDTFNDPES----PSFVFLLSSKAGGEGLNLIGASRLI--------LFDPDWN------- 678 (776)
T ss_pred cCceEEEEcCCCchHHHHHHHHhccCCCC----CceEEEEecccccCceeecccceEE--------EeCCCCC-------
Confidence 47899999999999999999888865431 1133455677777899998888877 5776654
Q ss_pred eccHhhHHHhcccCCCCCCCeEEeeccccccc
Q 008209 238 PISKASAHQRSGRAGRTQPGKCFRLYTEKSFN 269 (574)
Q Consensus 238 ~is~~~~~QR~GRaGR~~~G~~~rl~t~~~~~ 269 (574)
|.--.+|+=|+=|-|-..+-..|||.+....+
T Consensus 679 Pa~d~QAmaR~~RdGQKk~v~iYrLlatGtiE 710 (776)
T KOG0390|consen 679 PAVDQQAMARAWRDGQKKPVYIYRLLATGTIE 710 (776)
T ss_pred chhHHHHHHHhccCCCcceEEEEEeecCCCch
Confidence 55555666666666666689999999987765
No 152
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.01 E-value=0.0082 Score=68.50 Aligned_cols=176 Identities=15% Similarity=0.196 Sum_probs=102.2
Q ss_pred cEEEEccCCCH-HHHHhh---hC-C----CCeEEeCCeeece---eEEeec----C--CchhHHHHHHHHHHHHHhcCCC
Q 008209 65 KLVVMSATLEA-EKFQGY---FY-G----APLMKVPGRLHPV---EIFYTQ----E--PERDYLEAAIRTVVQIHMCEPS 126 (574)
Q Consensus 65 klvlmSATl~~-~~~~~~---f~-~----~~~i~~~gr~~~v---~~~y~~----~--~~~~~~~~~~~~~~~i~~~~~~ 126 (574)
.+|++|||+.+ +.|..| ++ + ...+.++. +|+. ...|.+ . ...++.......+..+.. .+
T Consensus 458 ~vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~S-pF~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~l~~--~~ 534 (697)
T PRK11747 458 GAVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPS-PFDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPELLE--KH 534 (697)
T ss_pred EEEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCC-CCCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHHHHh--cC
Confidence 57999999965 344322 23 1 12333332 2332 223332 1 234577777777777776 45
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCC----CCCCCCCCCCcEEEEecccc
Q 008209 127 GDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAP----PPSKEGGPPGRKIVVSTNIA 202 (574)
Q Consensus 127 g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~----~g~~~~~~~~~kvivaT~ia 202 (574)
|.+|||+||.+..+.+++.|.... +..++. ++..+ +.++++.++ .+. ..|+++|...
T Consensus 535 gg~LVlFtSy~~l~~v~~~l~~~~--------~~~ll~-Q~~~~---~~~ll~~f~~~~~~~~-------~~VL~g~~sf 595 (697)
T PRK11747 535 KGSLVLFASRRQMQKVADLLPRDL--------RLMLLV-QGDQP---RQRLLEKHKKRVDEGE-------GSVLFGLQSF 595 (697)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHhc--------CCcEEE-eCCch---HHHHHHHHHHHhccCC-------CeEEEEeccc
Confidence 558999999999999999987521 222333 34333 334443333 344 6799999999
Q ss_pred cccccCCC--eEEEEcCCcccceeecCC----------CCcceee--eeeccHhhHHHhcccCCCCC--CCeEEee
Q 008209 203 ETSLTIDG--IVYVIDPGFAKQKVYNPR----------VRVESLL--VSPISKASAHQRSGRAGRTQ--PGKCFRL 262 (574)
Q Consensus 203 e~gitip~--v~~VID~g~~k~~~y~~~----------~~~~~l~--~~~is~~~~~QR~GRaGR~~--~G~~~rl 262 (574)
.-|||+|| .+.||=.|+.-..--||. .|.+... ..|...-...|-+||.=|.. .|..+-+
T Consensus 596 ~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~il 671 (697)
T PRK11747 596 AEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTIL 671 (697)
T ss_pred cccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEE
Confidence 99999987 577775555322111111 1111111 12334445789999998876 4776655
No 153
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=96.86 E-value=0.0077 Score=68.58 Aligned_cols=181 Identities=17% Similarity=0.147 Sum_probs=107.4
Q ss_pred CccEEEEccCCC-HHHHHhhhC---CCCeE--EeCCeeecee---EEeec-----CCchhHHHHHHHHHHHHHhcCCCCC
Q 008209 63 DLKLVVMSATLE-AEKFQGYFY---GAPLM--KVPGRLHPVE---IFYTQ-----EPERDYLEAAIRTVVQIHMCEPSGD 128 (574)
Q Consensus 63 ~~klvlmSATl~-~~~~~~~f~---~~~~i--~~~gr~~~v~---~~y~~-----~~~~~~~~~~~~~~~~i~~~~~~g~ 128 (574)
...+|+|||||. .+.|..+.+ ..... .....+|+.. ..+.+ ...+.+.......+..+.. ..+|.
T Consensus 403 ~~~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~ 481 (654)
T COG1199 403 VASVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREILK-ASPGG 481 (654)
T ss_pred cCcEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccccCCCCCChHHHHHHHHHHHHHHh-hcCCC
Confidence 356999999995 345554443 11111 2222222211 12222 1112566666667777666 45669
Q ss_pred EEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCc-EEEEeccccccccc
Q 008209 129 ILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGR-KIVVSTNIAETSLT 207 (574)
Q Consensus 129 iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~-kvivaT~iae~git 207 (574)
+|||+||.+..+.+.+.+... .....+..++.-+..+ .++.+..+. . -++|+|....-|||
T Consensus 482 ~lvlF~Sy~~l~~~~~~~~~~--------~~~~~v~~q~~~~~~~---~l~~f~~~~-------~~~~lv~~gsf~EGVD 543 (654)
T COG1199 482 VLVLFPSYEYLKRVAERLKDE--------RSTLPVLTQGEDEREE---LLEKFKASG-------EGLILVGGGSFWEGVD 543 (654)
T ss_pred EEEEeccHHHHHHHHHHHhhc--------CccceeeecCCCcHHH---HHHHHHHhc-------CCeEEEeeccccCccc
Confidence 999999999999999999762 1113455566665553 344444433 2 79999999999999
Q ss_pred CCCe--EEEEcCCcccc----------eeecCCCCcc--eeeeeeccHhhHHHhcccCCCCCC--CeEEee
Q 008209 208 IDGI--VYVIDPGFAKQ----------KVYNPRVRVE--SLLVSPISKASAHQRSGRAGRTQP--GKCFRL 262 (574)
Q Consensus 208 ip~v--~~VID~g~~k~----------~~y~~~~~~~--~l~~~~is~~~~~QR~GRaGR~~~--G~~~rl 262 (574)
+|+= +.||=.|+.-. ..|..+.|.. .....|...-...|-+||+=|... |.++-|
T Consensus 544 ~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivll 614 (654)
T COG1199 544 FPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLL 614 (654)
T ss_pred CCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEe
Confidence 9976 44554444221 1122222211 223446667788999999988764 777766
No 154
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=96.83 E-value=0.0058 Score=69.86 Aligned_cols=120 Identities=18% Similarity=0.253 Sum_probs=96.7
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccccc
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAE 203 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae 203 (574)
.++..+|||.-=....+-+-..|. ..++..+-|.|...-++|+..++.|..... .-..|++|---.
T Consensus 1274 ~eghRvLIfTQMtkmLDVLeqFLn---------yHgylY~RLDg~t~vEqRQaLmerFNaD~R-----IfcfILSTrSgg 1339 (1958)
T KOG0391|consen 1274 SEGHRVLIFTQMTKMLDVLEQFLN---------YHGYLYVRLDGNTSVEQRQALMERFNADRR-----IFCFILSTRSGG 1339 (1958)
T ss_pred hcCceEEehhHHHHHHHHHHHHHh---------hcceEEEEecCCccHHHHHHHHHHhcCCCc-----eEEEEEeccCCc
Confidence 468899999665555554444444 267888999999999999999888876541 145688999999
Q ss_pred ccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEEeecccccccccc
Q 008209 204 TSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDL 272 (574)
Q Consensus 204 ~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl~t~~~~~~~l 272 (574)
.|||+-+.+.|| .||.+.+ |.--+++.-|+-|.|+++.=+.|||.++...++.+
T Consensus 1340 vGiNLtgADTVv--------FYDsDwN-------PtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeni 1393 (1958)
T KOG0391|consen 1340 VGINLTGADTVV--------FYDSDWN-------PTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENI 1393 (1958)
T ss_pred cccccccCceEE--------EecCCCC-------chhhhHHHHHHHhhcCccceEEEEeeccchHHHHH
Confidence 999999999999 7887765 77788999999999999999999999998876543
No 155
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=96.81 E-value=0.017 Score=64.92 Aligned_cols=109 Identities=18% Similarity=0.127 Sum_probs=72.7
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccccc
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAE 203 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae 203 (574)
..+.+|-||..|....+.+++.... ..-.|+.+.|.-+.. .+ +.+.+ .+|++=|++..
T Consensus 280 ~~gknIcvfsSt~~~~~~v~~~~~~---------~~~~Vl~l~s~~~~~---dv-~~W~~---------~~VviYT~~it 337 (824)
T PF02399_consen 280 NAGKNICVFSSTVSFAEIVARFCAR---------FTKKVLVLNSTDKLE---DV-ESWKK---------YDVVIYTPVIT 337 (824)
T ss_pred hCCCcEEEEeChHHHHHHHHHHHHh---------cCCeEEEEcCCCCcc---cc-ccccc---------eeEEEEeceEE
Confidence 3577899999999988888888875 345677787766554 22 22321 78999999999
Q ss_pred ccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEEeecccc
Q 008209 204 TSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEK 266 (574)
Q Consensus 204 ~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl~t~~ 266 (574)
.|++++...+=-=+++.|...+ -.+..+..|+.||+-.......|.-+...
T Consensus 338 vG~Sf~~~HF~~~f~yvk~~~~------------gpd~~s~~Q~lgRvR~l~~~ei~v~~d~~ 388 (824)
T PF02399_consen 338 VGLSFEEKHFDSMFAYVKPMSY------------GPDMVSVYQMLGRVRSLLDNEIYVYIDAS 388 (824)
T ss_pred EEeccchhhceEEEEEecCCCC------------CCcHHHHHHHHHHHHhhccCeEEEEEecc
Confidence 9999975533111122221111 23455789999999888877666655543
No 156
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.61 E-value=0.01 Score=68.00 Aligned_cols=189 Identities=12% Similarity=0.082 Sum_probs=104.4
Q ss_pred cEEEEccCCC-HHHHHhhhCC-CCeEEeCCeeec-----------------eeEEeecCCchhHHHHHHHHHHHHHhcCC
Q 008209 65 KLVVMSATLE-AEKFQGYFYG-APLMKVPGRLHP-----------------VEIFYTQEPERDYLEAAIRTVVQIHMCEP 125 (574)
Q Consensus 65 klvlmSATl~-~~~~~~~f~~-~~~i~~~gr~~~-----------------v~~~y~~~~~~~~~~~~~~~~~~i~~~~~ 125 (574)
.+|+|||||. .+.|.+.++- .+.....+..+| +...|.....+++.......+..+.. ..
T Consensus 443 svil~SgTL~p~~~~~~~Lg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~~~~-~~ 521 (705)
T TIGR00604 443 SVILASGTLSPLDAFPRNLGFNPVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEFSK-II 521 (705)
T ss_pred EEEEecccCCcHHHHHHHhCCCCccceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHHHhh-cC
Confidence 5899999994 6778777752 111111111111 11233333335666666666767665 34
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHH--HhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEec--cc
Q 008209 126 SGDILVFLTGEEEIEDACRKITKE--ITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVST--NI 201 (574)
Q Consensus 126 ~g~iLVFl~~~~ei~~~~~~L~~~--~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT--~i 201 (574)
+|.+|||+||..-.+.+.+.+.+. ...+.. ...+-+-+ .+. .+...+++.+..... .+..-|++|+ ..
T Consensus 522 pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~-~k~i~~E~-~~~---~~~~~~l~~f~~~~~---~~~gavL~av~gGk 593 (705)
T TIGR00604 522 PDGIVVFFPSYSYLENIVSTWKEMGILENIEK-KKLIFVET-KDA---QETSDALERYKQAVS---EGRGAVLLSVAGGK 593 (705)
T ss_pred CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhc-CCCEEEeC-CCc---chHHHHHHHHHHHHh---cCCceEEEEecCCc
Confidence 799999999999999999888652 111100 01222222 111 344556666643100 0014699999 88
Q ss_pred ccccccCCC--eEEEEcCCcccceeecCCCC-------------cceeeeeeccHhhHHHhcccCCCCCC--CeEEee
Q 008209 202 AETSLTIDG--IVYVIDPGFAKQKVYNPRVR-------------VESLLVSPISKASAHQRSGRAGRTQP--GKCFRL 262 (574)
Q Consensus 202 ae~gitip~--v~~VID~g~~k~~~y~~~~~-------------~~~l~~~~is~~~~~QR~GRaGR~~~--G~~~rl 262 (574)
..-|||++| .+.||=.|+.-....||... ...........-...|=+||+=|... |..+-+
T Consensus 594 ~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iill 671 (705)
T TIGR00604 594 VSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLL 671 (705)
T ss_pred ccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEE
Confidence 899999997 47777678754322222110 00000111223456899999999885 554443
No 157
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=96.06 E-value=0.027 Score=65.23 Aligned_cols=140 Identities=15% Similarity=0.234 Sum_probs=99.6
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccccc
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAE 203 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae 203 (574)
..+..||||-.=.+-.+-+++.|.. .++..--|-|++..+.|+.++..|... +...--.++||=.-.
T Consensus 697 ~~GHrVLIFSQMVRmLDIL~eYL~~---------r~ypfQRLDGsvrgelRq~AIDhFnap----~SddFvFLLSTRAGG 763 (1373)
T KOG0384|consen 697 EGGHRVLIFSQMVRMLDILAEYLSL---------RGYPFQRLDGSVRGELRQQAIDHFNAP----DSDDFVFLLSTRAGG 763 (1373)
T ss_pred cCCceEEEhHHHHHHHHHHHHHHHH---------cCCcceeccCCcchHHHHHHHHhccCC----CCCceEEEEecccCc
Confidence 4578999996655555555555543 577888899999999999998888543 234578899999999
Q ss_pred ccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEEeeccccccccccCCCCcchhccC
Q 008209 204 TSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRS 283 (574)
Q Consensus 204 ~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl~t~~~~~~~l~~~~~pei~~~ 283 (574)
-|||+-..+.|| .||++.+ |-.--+|+-|+-|.|-...=.+|||.|+..+++.|-+- .-++.
T Consensus 764 LGINLatADTVI--------IFDSDWN-------PQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilER---Ak~Km 825 (1373)
T KOG0384|consen 764 LGINLATADTVI--------IFDSDWN-------PQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILER---AKLKM 825 (1373)
T ss_pred ccccccccceEE--------EeCCCCC-------cchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHH---HHHHh
Confidence 999999998888 3444433 33344677777777777777899999999997554331 11233
Q ss_pred CchhhHHHHhh
Q 008209 284 NLANTVLTLKK 294 (574)
Q Consensus 284 ~l~~~~L~l~~ 294 (574)
-|+-+|+|.-.
T Consensus 826 vLD~aVIQ~m~ 836 (1373)
T KOG0384|consen 826 VLDHAVIQRMD 836 (1373)
T ss_pred hhHHHHHHhhc
Confidence 46677766544
No 158
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.04 E-value=0.023 Score=65.73 Aligned_cols=119 Identities=21% Similarity=0.312 Sum_probs=88.9
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccccccc
Q 008209 126 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETS 205 (574)
Q Consensus 126 ~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~g 205 (574)
+..|||||.=+..++-+.+-|-+. ..+.+....|-|+.++.+|.++.+.|.++.. ---.+++|-+-.-|
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~------~mpsVtymRLDGSVpp~~R~kiV~~FN~Dpt-----IDvLlLTThVGGLG 1408 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKK------YMPSVTYMRLDGSVPPGDRQKIVERFNEDPT-----IDVLLLTTHVGGLG 1408 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhh------hcCceeEEEecCCCCcHHHHHHHHHhcCCCc-----eeEEEEeeeccccc
Confidence 457999999988888777776542 2356667899999999999999999987632 14456789999999
Q ss_pred ccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEEeecccccccc
Q 008209 206 LTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNN 270 (574)
Q Consensus 206 itip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl~t~~~~~~ 270 (574)
+|+-|.+.|| --+-.|||-+ --+|+-|+-|-|-.+-=-+|||.++...++
T Consensus 1409 LNLTGADTVV----FvEHDWNPMr-----------DLQAMDRAHRIGQKrvVNVyRlItrGTLEE 1458 (1549)
T KOG0392|consen 1409 LNLTGADTVV----FVEHDWNPMR-----------DLQAMDRAHRIGQKRVVNVYRLITRGTLEE 1458 (1549)
T ss_pred cccCCCceEE----EEecCCCchh-----------hHHHHHHHHhhcCceeeeeeeehhcccHHH
Confidence 9999999999 2223344433 346666666666666677999999887753
No 159
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=95.50 E-value=0.01 Score=55.16 Aligned_cols=123 Identities=15% Similarity=0.197 Sum_probs=70.8
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc--c
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN--I 201 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~--i 201 (574)
..+|.+|||+||.+..+.+.+.+.+.... .+..++.- ...+...+++.+..+. .-|++++. .
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~-----~~~~v~~q----~~~~~~~~l~~~~~~~-------~~il~~v~~g~ 70 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEE-----KGIPVFVQ----GSKSRDELLEEFKRGE-------GAILLAVAGGS 70 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E------ETSCEEES----TCCHHHHHHHHHCCSS-------SEEEEEETTSC
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhccc-----ccceeeec----CcchHHHHHHHHHhcc-------CeEEEEEeccc
Confidence 45699999999999999999988652210 12233333 2334555666676666 78999998 8
Q ss_pred ccccccCCC--eEEEEcCCcccceeecCCCCc------------ceeeeeeccHhhHHHhcccCCCCCCCeEEee
Q 008209 202 AETSLTIDG--IVYVIDPGFAKQKVYNPRVRV------------ESLLVSPISKASAHQRSGRAGRTQPGKCFRL 262 (574)
Q Consensus 202 ae~gitip~--v~~VID~g~~k~~~y~~~~~~------------~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl 262 (574)
..-|||+|+ .+.||=.|+.-....||.... ......|...-...|-+||+=|...-.+..+
T Consensus 71 ~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~ 145 (167)
T PF13307_consen 71 FSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVII 145 (167)
T ss_dssp CGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEE
T ss_pred EEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEE
Confidence 889999996 677887776433222221100 0111234445567899999999886444433
No 160
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=95.32 E-value=0.087 Score=57.81 Aligned_cols=119 Identities=14% Similarity=0.191 Sum_probs=97.2
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccccc
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAE 203 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae 203 (574)
.++..+|+|+.-.+.++.+.+.|.. .++..+-|.|+....+|..+...+.... .--.+++|-...
T Consensus 1042 aegHRvL~yfQMTkM~dl~EdYl~y---------r~Y~ylRLDGSsk~~dRrd~vrDwQ~sd------iFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1042 AEGHRVLMYFQMTKMIDLIEDYLVY---------RGYTYLRLDGSSKASDRRDVVRDWQASD------IFVFLLSTRAGG 1106 (1185)
T ss_pred cCCceEEehhHHHHHHHHHHHHHHh---------hccceEEecCcchhhHHHHHHhhccCCc------eEEEEEecccCc
Confidence 4678899998877777777666654 5788899999999999999988887643 245678999999
Q ss_pred ccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEEeecccccccccc
Q 008209 204 TSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDL 272 (574)
Q Consensus 204 ~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl~t~~~~~~~l 272 (574)
-||++-..+.|| .||++.. |.--.+++-|+-|-|-+..-.+|||.+....++.+
T Consensus 1107 LGINLTAADTVi--------FYdSDWN-------PT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~ 1160 (1185)
T KOG0388|consen 1107 LGINLTAADTVI--------FYDSDWN-------PTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKV 1160 (1185)
T ss_pred ccccccccceEE--------EecCCCC-------cchhhHHHHHHHhccCccceeeeeecccccHHHHH
Confidence 999999999999 6777655 66667889999999999999999999998876544
No 161
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=95.14 E-value=0.036 Score=51.46 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=39.6
Q ss_pred CCCeEEEchHHHHHHHhcC------------CCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCC
Q 008209 8 LLGGRYLTDGMLLREAMTD------------PLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL 73 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~------------~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl 73 (574)
..++.+.|...|....... .....+++||+||+|. ...... .+.++. .+...+|.||||+
T Consensus 111 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~-~~~~~~----~~~i~~-~~~~~~l~lTATp 182 (184)
T PF04851_consen 111 DKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHH-YPSDSS----YREIIE-FKAAFILGLTATP 182 (184)
T ss_dssp S-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGC-THHHHH----HHHHHH-SSCCEEEEEESS-
T ss_pred cccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhh-cCCHHH----HHHHHc-CCCCeEEEEEeCc
Confidence 5778999999998876431 1245789999999995 222221 222222 5678899999996
No 162
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=95.04 E-value=0.51 Score=52.91 Aligned_cols=83 Identities=19% Similarity=0.238 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCH-HHHhhhcCCC-CCCCC
Q 008209 109 YLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPP-AMQQKIFEPA-PPPSK 186 (574)
Q Consensus 109 ~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~-~~q~~v~~~~-~~g~~ 186 (574)
|.+.....+..+.. ..+|.+||-++|...++.+++.|...+ .+.++ ..|..++ .+..+-|... ..+.
T Consensus 454 ~~~~~~~~~~~~~~-~~~G~~lvLfTS~~~~~~~~~~l~~~l--------~~~~l-~qg~~~~~~~l~~~f~~~~~~~~- 522 (636)
T TIGR03117 454 WLENVSLSTAAILR-KAQGGTLVLTTAFSHISAIGQLVELGI--------PAEIV-IQSEKNRLASAEQQFLALYANGI- 522 (636)
T ss_pred HHHHHHHHHHHHHH-HcCCCEEEEechHHHHHHHHHHHHhhc--------CCCEE-EeCCCccHHHHHHHHHHhhcCCC-
Confidence 55556666666665 568899999999999999999997632 23333 3344422 3222223321 1223
Q ss_pred CCCCCCcEEEEecccccccccC
Q 008209 187 EGGPPGRKIVVSTNIAETSLTI 208 (574)
Q Consensus 187 ~~~~~~~kvivaT~iae~giti 208 (574)
.-|+++|.-+-.|||+
T Consensus 523 ------~~vL~gt~sfweGvDv 538 (636)
T TIGR03117 523 ------QPVLIAAGGAWTGIDL 538 (636)
T ss_pred ------CcEEEeCCcccccccc
Confidence 6899999999999999
No 163
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=94.46 E-value=0.21 Score=55.64 Aligned_cols=118 Identities=17% Similarity=0.177 Sum_probs=89.4
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccc
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 204 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~ 204 (574)
.+..||+|--= ..+...|+..+. ..++..+-|-|..+-++|+.++..|.... .---.++||-.-.-
T Consensus 776 ~G~RVLiFSQF----TqmLDILE~~L~-----~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~-----difVFLLSTKAGG~ 841 (941)
T KOG0389|consen 776 KGDRVLIFSQF----TQMLDILEVVLD-----TLGYKYLRLDGSTQVNDRQDLIDEFNTDK-----DIFVFLLSTKAGGF 841 (941)
T ss_pred cCCEEEEeeHH----HHHHHHHHHHHH-----hcCceEEeecCCccchHHHHHHHhhccCC-----ceEEEEEeeccCcc
Confidence 46789999533 223334433332 25788999999999999999999987655 22567889999999
Q ss_pred cccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEEeeccccccccc
Q 008209 205 SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNND 271 (574)
Q Consensus 205 gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl~t~~~~~~~ 271 (574)
||++-...+||=.+ ..|||... -+|.-|+-|.|-+.|=.+|||.|+...++.
T Consensus 842 GINLt~An~VIihD----~dFNP~dD-----------~QAEDRcHRvGQtkpVtV~rLItk~TIEE~ 893 (941)
T KOG0389|consen 842 GINLTCANTVIIHD----IDFNPYDD-----------KQAEDRCHRVGQTKPVTVYRLITKSTIEEG 893 (941)
T ss_pred eecccccceEEEee----cCCCCccc-----------chhHHHHHhhCCcceeEEEEEEecCcHHHH
Confidence 99999999999333 24565444 488999999999999999999999887644
No 164
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=93.15 E-value=0.23 Score=58.40 Aligned_cols=114 Identities=20% Similarity=0.313 Sum_probs=90.9
Q ss_pred CEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccccccccc
Q 008209 128 DILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLT 207 (574)
Q Consensus 128 ~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~git 207 (574)
++|+|.+-..-..-+...+.. .++..+.++|+++...|...++.|..+. ...-.+++|-...+|+|
T Consensus 713 kvlifsq~t~~l~il~~~l~~---------~~~~~~~ldG~~~~~~r~~~i~~f~~~~-----~~~v~lls~kagg~gln 778 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKA---------LGIKYVRLDGSTPAKRRQELIDRFNADE-----EEKVFLLSLKAGGLGLN 778 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHh---------cCCcEEEEeCCCChhhHHHHHHHhhcCC-----CCceEEEEeccccccee
Confidence 799999998888877777765 2367899999999999999988887652 12677788889999999
Q ss_pred CCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEEeecccccccc
Q 008209 208 IDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNN 270 (574)
Q Consensus 208 ip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl~t~~~~~~ 270 (574)
.-.-..|| .||+... |.-..++..|+-|.|+..+=..|++.++...++
T Consensus 779 Lt~a~~vi--------~~d~~wn-------p~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe 826 (866)
T COG0553 779 LTGADTVI--------LFDPWWN-------PAVELQAIDRAHRIGQKRPVKVYRLITRGTIEE 826 (866)
T ss_pred ecccceEE--------EeccccC-------hHHHHHHHHHHHHhcCcceeEEEEeecCCcHHH
Confidence 99999999 4555433 555667777888888888889999999888653
No 165
>COG4889 Predicted helicase [General function prediction only]
Probab=92.27 E-value=0.073 Score=59.78 Aligned_cols=108 Identities=17% Similarity=0.272 Sum_probs=70.6
Q ss_pred CEEEEcCCHHHHHHHHHHHHHHHh----hcCCCCCCeEEEE--cCCCCCHHHHhhhcC---CCCCCCCCCCCCCcEEEEe
Q 008209 128 DILVFLTGEEEIEDACRKITKEIT----NMGDQVGPVKVVP--LYSTLPPAMQQKIFE---PAPPPSKEGGPPGRKIVVS 198 (574)
Q Consensus 128 ~iLVFl~~~~ei~~~~~~L~~~~~----~~~~~~~~~~v~~--lhs~l~~~~q~~v~~---~~~~g~~~~~~~~~kviva 198 (574)
..+-|+-+.++-..+++......+ ++-.+..++.+-. ..|.|..-+|..... .+.+.. .||+--
T Consensus 462 RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~ne-------ckIlSN 534 (1518)
T COG4889 462 RAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNE-------CKILSN 534 (1518)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcch-------heeecc
Confidence 456677666655555555543221 1112223444444 457788777754422 234444 788777
Q ss_pred cccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEE
Q 008209 199 TNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCF 260 (574)
Q Consensus 199 T~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~ 260 (574)
---+.-|||+|..+-|| .+||+. |..+.+|-+||+=|..||+-|
T Consensus 535 aRcLSEGVDVPaLDsVi--------Ff~pr~----------smVDIVQaVGRVMRKa~gK~y 578 (1518)
T COG4889 535 ARCLSEGVDVPALDSVI--------FFDPRS----------SMVDIVQAVGRVMRKAKGKKY 578 (1518)
T ss_pred chhhhcCCCccccceEE--------EecCch----------hHHHHHHHHHHHHHhCcCCcc
Confidence 77788999999999999 677754 567899999999999988643
No 166
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=89.47 E-value=0.89 Score=52.56 Aligned_cols=64 Identities=13% Similarity=-0.013 Sum_probs=45.0
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCC-CCcchHHHHHHHHHHHhhCCCccEEEEccCC
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHE-RTLATDVLFGLLKEVLKNRPDLKLVVMSATL 73 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~He-R~~~~d~ll~~lk~~~~~~~~~klvlmSATl 73 (574)
...|+++|+.+|..-|+++. .++.++.|||||||. .+-..+..+. +.....+++.-|..|||..
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~--rlyr~~n~~gfIkafSdsP 72 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFIL--RLYRQKNKTGFIKAFSDNP 72 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHH--HHHHHhCCCcceEEecCCC
Confidence 35799999999999888776 589999999999993 1122222222 2222355667788899885
No 167
>PRK05580 primosome assembly protein PriA; Validated
Probab=89.04 E-value=0.59 Score=53.35 Aligned_cols=75 Identities=16% Similarity=0.145 Sum_probs=59.7
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccc
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 204 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~ 204 (574)
.++++||.+|+++-+..+.+.+++.+ +..+..+||+++..+|.+++.....|. .+|||+|.-+-
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~f--------g~~v~~~~s~~s~~~r~~~~~~~~~g~-------~~IVVgTrsal- 252 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRARF--------GAPVAVLHSGLSDGERLDEWRKAKRGE-------AKVVIGARSAL- 252 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHh--------CCCEEEEECCCCHHHHHHHHHHHHcCC-------CCEEEeccHHh-
Confidence 36789999999999999999887643 346889999999999988888777776 79999997543
Q ss_pred cccCCCeEEEE
Q 008209 205 SLTIDGIVYVI 215 (574)
Q Consensus 205 gitip~v~~VI 215 (574)
-+.+.++.+||
T Consensus 253 ~~p~~~l~liV 263 (679)
T PRK05580 253 FLPFKNLGLII 263 (679)
T ss_pred cccccCCCEEE
Confidence 24566776655
No 168
>PRK14873 primosome assembly protein PriA; Provisional
Probab=88.76 E-value=0.89 Score=51.53 Aligned_cols=76 Identities=17% Similarity=0.211 Sum_probs=60.2
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccc
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 204 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~ 204 (574)
.++++||.+|....+..+.+.|++.+ +.-.+..+||++++.+|.+.|.....|. .+|||.|=-|-
T Consensus 187 ~Gk~vLvLvPEi~lt~q~~~rl~~~f-------~~~~v~~lhS~l~~~~R~~~w~~~~~G~-------~~IViGtRSAv- 251 (665)
T PRK14873 187 AGRGALVVVPDQRDVDRLEAALRALL-------GAGDVAVLSAGLGPADRYRRWLAVLRGQ-------ARVVVGTRSAV- 251 (665)
T ss_pred cCCeEEEEecchhhHHHHHHHHHHHc-------CCCcEEEECCCCCHHHHHHHHHHHhCCC-------CcEEEEcceeE-
Confidence 47789999999999999999998754 2245888999999999999999999888 89999996443
Q ss_pred cccCCCeEEEE
Q 008209 205 SLTIDGIVYVI 215 (574)
Q Consensus 205 gitip~v~~VI 215 (574)
=.-+++...||
T Consensus 252 FaP~~~LgLII 262 (665)
T PRK14873 252 FAPVEDLGLVA 262 (665)
T ss_pred EeccCCCCEEE
Confidence 23444544444
No 169
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=88.42 E-value=1.4 Score=50.48 Aligned_cols=79 Identities=16% Similarity=0.196 Sum_probs=64.4
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccc-cc
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNI-AE 203 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~i-ae 203 (574)
.+.++++.+||+.=+...++.+.+.+.. .++.+..+||+++..++..+++....|. ..|||+|.. ..
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~-----~~i~v~ll~G~~~~~~r~~~~~~l~~g~-------~~IvVgT~~ll~ 376 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEP-----LGIRVALLTGSLKGKERREILEAIASGE-------ADIVIGTHALIQ 376 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhh-----cCcEEEEEcCCCCHHHHHHHHHHHhCCC-------CCEEEchHHHhc
Confidence 5778999999999999999988875543 3578999999999999998888887776 899999973 44
Q ss_pred ccccCCCeEEEE
Q 008209 204 TSLTIDGIVYVI 215 (574)
Q Consensus 204 ~gitip~v~~VI 215 (574)
..+.++++.+||
T Consensus 377 ~~v~~~~l~lvV 388 (681)
T PRK10917 377 DDVEFHNLGLVI 388 (681)
T ss_pred ccchhcccceEE
Confidence 456777888766
No 170
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=88.39 E-value=0.18 Score=57.91 Aligned_cols=135 Identities=16% Similarity=0.238 Sum_probs=80.7
Q ss_pred CCCeEEEchHHHHHHH---hcCCCCCCccEEEEecCC----CCCcchHHHHHHHHHHH-hhCCCccEEEEccCC-CHHHH
Q 008209 8 LLGGRYLTDGMLLREA---MTDPLLERYKVIVLDEAH----ERTLATDVLFGLLKEVL-KNRPDLKLVVMSATL-EAEKF 78 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l---~~~~~L~~~~~vIiDE~H----eR~~~~d~ll~~lk~~~-~~~~~~klvlmSATl-~~~~~ 78 (574)
.++|++.|+...-... ++-..+.+++.+|+||.| .|+...+.+......+- ...+.+|++++|--+ ++..+
T Consensus 1020 ~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na~dl 1099 (1230)
T KOG0952|consen 1020 EADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANANDL 1099 (1230)
T ss_pred cCceEEcccccccCccccccchhhhccccceeecccccccCCCcceEEEEeeccccCccccCcchhhhhHhhhhhccHHH
Confidence 4789999986554433 333468899999999999 66766665544444311 134567888887666 89999
Q ss_pred HhhhCCCCeEEe--CCeeeceeEEeecCCchhHHH------HHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHH
Q 008209 79 QGYFYGAPLMKV--PGRLHPVEIFYTQEPERDYLE------AAIRTVVQIHMCEPSGDILVFLTGEEEIEDACR 144 (574)
Q Consensus 79 ~~~f~~~~~i~~--~gr~~~v~~~y~~~~~~~~~~------~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~ 144 (574)
++|++-.+.... .-|+.|.+++....|..-|.. ......+..+ .+..++|+|+.+++.....+.
T Consensus 1100 a~wl~~~~~~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~--sp~~p~lifv~srrqtrlta~ 1171 (1230)
T KOG0952|consen 1100 ADWLNIKDMYNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTH--SPIKPVLIFVSSRRQTRLTAL 1171 (1230)
T ss_pred HHHhCCCCcCCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcC--CCCCceEEEeecccccccchH
Confidence 999974433222 234445555544444311111 1111222222 467899999998875544333
No 171
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.50 E-value=0.78 Score=50.43 Aligned_cols=75 Identities=15% Similarity=0.142 Sum_probs=59.0
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccc
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 204 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~ 204 (574)
.++++||.+|+..-+...++.+++.+ +..+..+||+++..++.+++.....|. .+|||+|..+-
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f--------~~~v~vlhs~~~~~er~~~~~~~~~g~-------~~IVVGTrsal- 87 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRF--------GSQVAVLHSGLSDSEKLQAWRKVKNGE-------ILVVIGTRSAL- 87 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHh--------CCcEEEEECCCCHHHHHHHHHHHHcCC-------CCEEECChHHH-
Confidence 46789999999999999999988743 245778899999999988888777776 78999997543
Q ss_pred cccCCCeEEEE
Q 008209 205 SLTIDGIVYVI 215 (574)
Q Consensus 205 gitip~v~~VI 215 (574)
-..++++.+||
T Consensus 88 f~p~~~l~lII 98 (505)
T TIGR00595 88 FLPFKNLGLII 98 (505)
T ss_pred cCcccCCCEEE
Confidence 24566666655
No 172
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=87.01 E-value=1.7 Score=50.24 Aligned_cols=76 Identities=14% Similarity=0.237 Sum_probs=59.4
Q ss_pred HHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEE
Q 008209 117 VVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIV 196 (574)
Q Consensus 117 ~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvi 196 (574)
++.+.....++.+++.+||.-=+.++++.|++.....+ .....++ +||.|+..+++.+.+.+.+|. -+|+
T Consensus 116 ~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~--~~~~~~~-yh~~l~~~ekee~le~i~~gd-------fdIl 185 (1187)
T COG1110 116 LMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAG--SLDVLVV-YHSALPTKEKEEALERIESGD-------FDIL 185 (1187)
T ss_pred HHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcC--Ccceeee-eccccchHHHHHHHHHHhcCC-------ccEE
Confidence 33333334568899999999999999999988655433 2344455 999999999999999999988 8999
Q ss_pred Eecccc
Q 008209 197 VSTNIA 202 (574)
Q Consensus 197 vaT~ia 202 (574)
|+|+-.
T Consensus 186 itTs~F 191 (1187)
T COG1110 186 ITTSQF 191 (1187)
T ss_pred EEeHHH
Confidence 999754
No 173
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.80 E-value=1.7 Score=46.60 Aligned_cols=111 Identities=18% Similarity=0.218 Sum_probs=71.7
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEc--CCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccc
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPL--YSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIA 202 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~l--hs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ia 202 (574)
....+||+.|+.-+-.++-+.+.+.- +....+ |+..+.-.|.+ +-|-.|. ..|++=|--+
T Consensus 551 t~s~~LiyIPSYfDFVRvRNy~K~e~---------i~F~~i~EYssk~~vsRAR--~lF~qgr-------~~vlLyTER~ 612 (698)
T KOG2340|consen 551 TESGILIYIPSYFDFVRVRNYMKKEE---------ISFVMINEYSSKSKVSRAR--ELFFQGR-------KSVLLYTERA 612 (698)
T ss_pred ccCceEEEecchhhHHHHHHHhhhhh---------cchHHHhhhhhHhhhhHHH--HHHHhcC-------ceEEEEehhh
Confidence 35689999999999999999987632 222222 23222222222 2234444 7888888655
Q ss_pred c--ccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCC-----CeEEeecccccc
Q 008209 203 E--TSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQP-----GKCFRLYTEKSF 268 (574)
Q Consensus 203 e--~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~-----G~~~rl~t~~~~ 268 (574)
- +--+|.||+-|| .|-|.+. |-=-++.+.+.+|+--.|. -.|-.||++.+-
T Consensus 613 hffrR~~ikGVk~vV--------fYqpP~~-------P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~ 670 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVV--------FYQPPNN-------PHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDR 670 (698)
T ss_pred hhhhhheecceeeEE--------EecCCCC-------cHHHHHHHhhhhhhhccCCccccceEEEEEeechhh
Confidence 3 456889999999 4555444 6666788888888754442 367778887554
No 174
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=86.76 E-value=1.1 Score=45.19 Aligned_cols=66 Identities=26% Similarity=0.306 Sum_probs=40.3
Q ss_pred cCCCeEEEchHHHHHHHhcCC-----------CC--CCccEEEEecCCC-CCcch------HHHHHHHHHHHhhCCCccE
Q 008209 7 VLLGGRYLTDGMLLREAMTDP-----------LL--ERYKVIVLDEAHE-RTLAT------DVLFGLLKEVLKNRPDLKL 66 (574)
Q Consensus 7 ~~~~I~~~T~g~Ll~~l~~~~-----------~L--~~~~~vIiDE~He-R~~~~------d~ll~~lk~~~~~~~~~kl 66 (574)
....|+|+|.--|...-...+ ++ .-=++||+||+|. -+... ....+. ..+...-|+-|+
T Consensus 135 ~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~av-l~LQ~~LP~ARv 213 (303)
T PF13872_consen 135 LKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAV-LELQNRLPNARV 213 (303)
T ss_pred CCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHH-HHHHHhCCCCcE
Confidence 356799999998887754211 11 1246999999993 11111 111222 223334578999
Q ss_pred EEEccCC
Q 008209 67 VVMSATL 73 (574)
Q Consensus 67 vlmSATl 73 (574)
|.+|||-
T Consensus 214 vY~SATg 220 (303)
T PF13872_consen 214 VYASATG 220 (303)
T ss_pred EEecccc
Confidence 9999994
No 175
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=86.50 E-value=1.1 Score=51.83 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=20.9
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHH
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITK 148 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~ 148 (574)
.+++.|||||...+.+..+.+.|..
T Consensus 293 ~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 293 QGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred CCCCcEEEEEcchHHHHHHHHHHHh
Confidence 3567899999999999988888854
No 176
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=85.07 E-value=1.5 Score=47.29 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=49.4
Q ss_pred CEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc
Q 008209 128 DILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 200 (574)
Q Consensus 128 ~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ 200 (574)
-.|||.||++-+..++++|..... ..++.+..+.|||....|+++++.- -.|||||+
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~-----~t~i~v~si~GGLavqKQqRlL~~~-----------p~IVVATP 321 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAE-----KTQIRVASITGGLAVQKQQRLLNQR-----------PDIVVATP 321 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhcc-----ccCeEEEEeechhHHHHHHHHHhcC-----------CCEEEecc
Confidence 389999999999999999987433 4789999999999999999998873 47999997
No 177
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=84.21 E-value=7.9 Score=43.85 Aligned_cols=76 Identities=21% Similarity=0.236 Sum_probs=55.4
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc----
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN---- 200 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~---- 200 (574)
...++||.+|+++=+..+++.+.+.... ..++.++.+||+.+.+.|...+.. + ..|||+|+
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~----~~~i~v~~~~gG~~~~~q~~~l~~---~--------~~IVVgTPgrl~ 137 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKH----MRGVNVVALYGGQRYDVQLRALRQ---G--------PQIVVGTPGRLL 137 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhh----cCCceEEEEECCcCHHHHHHHhcC---C--------CCEEEECHHHHH
Confidence 4568999999999888888887664322 246889999999988877666542 2 47999995
Q ss_pred -ccc-ccccCCCeEEEE
Q 008209 201 -IAE-TSLTIDGIVYVI 215 (574)
Q Consensus 201 -iae-~gitip~v~~VI 215 (574)
... ..+++.++.+||
T Consensus 138 d~l~r~~l~l~~l~~lV 154 (629)
T PRK11634 138 DHLKRGTLDLSKLSGLV 154 (629)
T ss_pred HHHHcCCcchhhceEEE
Confidence 222 346778888766
No 178
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=84.16 E-value=2.5 Score=49.85 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=62.6
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccc-cc
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNI-AE 203 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~i-ae 203 (574)
.+.+++|.+||+.=+...++.+.+.+.. .++.+..++|..+..++.++++....|. ..|||+|.- +.
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~-----~~i~v~~Lsg~~~~~e~~~~~~~l~~g~-------~dIVIGTp~ll~ 566 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFAN-----FPVTIELLSRFRSAKEQNEILKELASGK-------IDILIGTHKLLQ 566 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhcc-----CCcEEEEEeccccHHHHHHHHHHHHcCC-------ceEEEchHHHhh
Confidence 4578999999999999999888875532 3577888999999999988888877776 789999983 33
Q ss_pred ccccCCCeEEEE
Q 008209 204 TSLTIDGIVYVI 215 (574)
Q Consensus 204 ~gitip~v~~VI 215 (574)
..+.+.++.+||
T Consensus 567 ~~v~f~~L~llV 578 (926)
T TIGR00580 567 KDVKFKDLGLLI 578 (926)
T ss_pred CCCCcccCCEEE
Confidence 456777777766
No 179
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=83.82 E-value=4.4 Score=44.70 Aligned_cols=72 Identities=19% Similarity=0.298 Sum_probs=56.3
Q ss_pred EEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc-----ccc
Q 008209 129 ILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN-----IAE 203 (574)
Q Consensus 129 iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~-----iae 203 (574)
.||++||++-+..+++.+.+.... ..++.++.++||.+...|...++. | ..|||+|+ ..+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~----~~~~~~~~i~GG~~~~~q~~~l~~---~--------~~ivVaTPGRllD~i~ 166 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKN----LGGLRVAVVYGGVSIRKQIEALKR---G--------VDIVVATPGRLLDLIK 166 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhh----cCCccEEEEECCCCHHHHHHHHhc---C--------CCEEEECccHHHHHHH
Confidence 999999999888888888764432 125779999999999998877665 2 58999997 345
Q ss_pred cc-ccCCCeEEEE
Q 008209 204 TS-LTIDGIVYVI 215 (574)
Q Consensus 204 ~g-itip~v~~VI 215 (574)
.+ ++...+.++|
T Consensus 167 ~~~l~l~~v~~lV 179 (513)
T COG0513 167 RGKLDLSGVETLV 179 (513)
T ss_pred cCCcchhhcCEEE
Confidence 54 7888888776
No 180
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=83.73 E-value=0.98 Score=45.54 Aligned_cols=57 Identities=18% Similarity=0.146 Sum_probs=35.0
Q ss_pred CCCeEEEchHHHH--------HHHhcCCCCCCccEEEEecCCC-CCcchHHHHHHHHHHHhhCCCccEEEEccCC
Q 008209 8 LLGGRYLTDGMLL--------REAMTDPLLERYKVIVLDEAHE-RTLATDVLFGLLKEVLKNRPDLKLVVMSATL 73 (574)
Q Consensus 8 ~~~I~~~T~g~Ll--------~~l~~~~~L~~~~~vIiDE~He-R~~~~d~ll~~lk~~~~~~~~~klvlmSATl 73 (574)
..+++++|...+. ..+.. -+++.||+||+|. ++..+...-+ +.. .. ..+.++||||+
T Consensus 107 ~~~vvi~ty~~~~~~~~~~~~~~l~~----~~~~~vIvDEaH~~k~~~s~~~~~-l~~---l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 107 KYDVVITTYETLRKARKKKDKEDLKQ----IKWDRVIVDEAHRLKNKDSKRYKA-LRK---LR-ARYRWLLSGTP 172 (299)
T ss_dssp CSSEEEEEHHHHH--TSTHTTHHHHT----SEEEEEEETTGGGGTTTTSHHHHH-HHC---CC-ECEEEEE-SS-
T ss_pred cceeeecccccccccccccccccccc----ccceeEEEeccccccccccccccc-ccc---cc-cceEEeecccc
Confidence 4679999999988 22222 3599999999995 3333333222 221 22 56788899997
No 181
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=83.22 E-value=1.7 Score=51.15 Aligned_cols=63 Identities=17% Similarity=0.248 Sum_probs=37.5
Q ss_pred CCeEEEchHHHHHH--HhcCCCCCCccEEEEecCCC-C---CcchHHHHHHHHHHHhhCCCccEEEEccCCC
Q 008209 9 LGGRYLTDGMLLRE--AMTDPLLERYKVIVLDEAHE-R---TLATDVLFGLLKEVLKNRPDLKLVVMSATLE 74 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~--l~~~~~L~~~~~vIiDE~He-R---~~~~d~ll~~lk~~~~~~~~~klvlmSATl~ 74 (574)
.+++++|.+.|.+. ....-.-..+++||+||+|. + +-.+. ....++.+... -..++++|||+.
T Consensus 248 ~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~-~y~~v~~La~~--~~~~LLLTATP~ 316 (956)
T PRK04914 248 EQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSR-EYQVVEQLAEV--IPGVLLLTATPE 316 (956)
T ss_pred CcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCH-HHHHHHHHhhc--cCCEEEEEcCcc
Confidence 57999999988752 11111124789999999993 2 11121 23344443222 246899999984
No 182
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=80.88 E-value=1.4 Score=51.06 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=27.9
Q ss_pred CCCeEEEchHHH-HHHHhcCCC--C-----CCccEEEEecCC
Q 008209 8 LLGGRYLTDGML-LREAMTDPL--L-----ERYKVIVLDEAH 41 (574)
Q Consensus 8 ~~~I~~~T~g~L-l~~l~~~~~--L-----~~~~~vIiDE~H 41 (574)
..+|+|+|+|.| .+.|..+.. + .++.++||||||
T Consensus 171 ~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaD 212 (896)
T PRK13104 171 KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVD 212 (896)
T ss_pred CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHh
Confidence 369999999999 777765532 2 689999999999
No 183
>PF13871 Helicase_C_4: Helicase_C-like
Probab=80.52 E-value=7.5 Score=39.02 Aligned_cols=119 Identities=21% Similarity=0.235 Sum_probs=74.2
Q ss_pred cCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCC-
Q 008209 178 FEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQP- 256 (574)
Q Consensus 178 ~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~- 256 (574)
.+.|..|. .+|+|-|..+.+||.+..-.-|-| .+.....+...|-|...++|-.||+-|.+.
T Consensus 54 ~~~F~~g~-------k~v~iis~AgstGiSlHAd~~~~n----------qr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~ 116 (278)
T PF13871_consen 54 KQAFMDGE-------KDVAIISDAGSTGISLHADRRVKN----------QRRRVHITLELPWSADKAIQQFGRTHRSNQV 116 (278)
T ss_pred HHHHhCCC-------ceEEEEecccccccchhccccCCC----------CCceEEEEeeCCCCHHHHHHHhccccccccc
Confidence 34566776 789999999999999986555544 122223344557899999999999999862
Q ss_pred -CeEEee-ccccccccccCCCCcchhccCCchhhHHHHhhcCCCCccccCCCCCCcHHH-HHHHHHHHHHcCCccCCCCc
Q 008209 257 -GKCFRL-YTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPET-LMRALEVLNYLGALDDDGNL 333 (574)
Q Consensus 257 -G~~~rl-~t~~~~~~~l~~~~~pei~~~~l~~~~L~l~~~~~~~~~~~~~l~~P~~~~-l~~al~~L~~lgald~~~~l 333 (574)
+-.|++ +|.-.. ... ....-..|..+||+....+=
T Consensus 117 ~~P~y~~l~t~~~g------------------------------------------E~Rfas~va~rL~sLgAlt~gdr~ 154 (278)
T PF13871_consen 117 SAPEYRFLVTDLPG------------------------------------------ERRFASTVARRLESLGALTRGDRR 154 (278)
T ss_pred cCCEEEEeecCCHH------------------------------------------HHHHHHHHHHHHhhccccccCccc
Confidence 222332 111111 111 22335678888888764443
Q ss_pred ChhhhhhccCCCCHHHHHHHHh
Q 008209 334 TEMGEKMSEFPLDPQMSKMLVE 355 (574)
Q Consensus 334 T~lG~~~~~lpl~p~~~~~ll~ 355 (574)
|.-+..++.+-++-.+|+..+.
T Consensus 155 ~~~~~~~~~~n~~~~yg~~aL~ 176 (278)
T PF13871_consen 155 AGGALDLSEFNLDNKYGRKALR 176 (278)
T ss_pred ccccccccccccchHHHHHHHH
Confidence 3333556777777777776544
No 184
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=80.29 E-value=0.68 Score=43.12 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=25.8
Q ss_pred cCCCeEEEchHHHHHHHhcC---CCCCCccEEEEecCCC
Q 008209 7 VLLGGRYLTDGMLLREAMTD---PLLERYKVIVLDEAHE 42 (574)
Q Consensus 7 ~~~~I~~~T~g~Ll~~l~~~---~~L~~~~~vIiDE~He 42 (574)
...+|+|++..+|+...... ....+..+|||||||.
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHN 156 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHN 156 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccc
Confidence 35899999999998865432 2335678999999995
No 185
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=79.16 E-value=7 Score=41.82 Aligned_cols=124 Identities=18% Similarity=0.212 Sum_probs=76.1
Q ss_pred HHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEE
Q 008209 117 VVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIV 196 (574)
Q Consensus 117 ~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvi 196 (574)
+..+......-+.|||-.=..-.+.+.-.|. ..++.++.|-|+|++..|...++.|.+.. .++-.+
T Consensus 629 l~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~---------kaGfscVkL~GsMs~~ardatik~F~nd~-----~c~vfL 694 (791)
T KOG1002|consen 629 LYFLRERDRTAKSIVFSQFTSMLDLIEWRLG---------KAGFSCVKLVGSMSPAARDATIKYFKNDI-----DCRVFL 694 (791)
T ss_pred HHHHHHcccchhhhhHHHHHHHHHHHHHHhh---------ccCceEEEeccCCChHHHHHHHHHhccCC-----CeEEEE
Confidence 3333333345567777443333333333332 26899999999999999999999887654 334555
Q ss_pred EecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEEeeccccccc
Q 008209 197 VSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFN 269 (574)
Q Consensus 197 vaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl~t~~~~~ 269 (574)
++--.....+++-....|. .-.+-||| .-.-++.-|.-|.|.-.|=.+.|+.-+...+
T Consensus 695 vSLkAGGVALNLteASqVF----mmDPWWNp-----------aVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE 752 (791)
T KOG1002|consen 695 VSLKAGGVALNLTEASQVF----MMDPWWNP-----------AVEWQAQDRIHRIGQYRPVKVVRFCIENSIE 752 (791)
T ss_pred EEeccCceEeeechhceeE----eecccccH-----------HHHhhhhhhHHhhcCccceeEEEeehhccHH
Confidence 5555444555555556665 22223333 2233556677888888898899987776654
No 186
>PRK10689 transcription-repair coupling factor; Provisional
Probab=79.03 E-value=3 Score=50.44 Aligned_cols=79 Identities=14% Similarity=0.197 Sum_probs=60.3
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc-ccc
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN-IAE 203 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~-iae 203 (574)
.+.+++|.+||+.-+...++.+.+.+.. .++.+..+++..+..+|..+++....|. ..|||+|. .+.
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~-----~~v~i~~l~g~~s~~e~~~il~~l~~g~-------~dIVVgTp~lL~ 715 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFAN-----WPVRIEMLSRFRSAKEQTQILAEAAEGK-------IDILIGTHKLLQ 715 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhcc-----CCceEEEEECCCCHHHHHHHHHHHHhCC-------CCEEEECHHHHh
Confidence 4678999999999999998888765432 3467788999999999998888776665 78999996 334
Q ss_pred ccccCCCeEEEE
Q 008209 204 TSLTIDGIVYVI 215 (574)
Q Consensus 204 ~gitip~v~~VI 215 (574)
..+...++.+||
T Consensus 716 ~~v~~~~L~lLV 727 (1147)
T PRK10689 716 SDVKWKDLGLLI 727 (1147)
T ss_pred CCCCHhhCCEEE
Confidence 455666776544
No 187
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=78.87 E-value=5.6 Score=45.12 Aligned_cols=79 Identities=14% Similarity=0.166 Sum_probs=62.4
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccc
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 204 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~ 204 (574)
.+.++++-+||+.=+...++.+.+.+.. .++.+..+||+++..++..+++....|. ..|||+|...=.
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~-----~gi~v~lltg~~~~~~r~~~~~~i~~g~-------~~IiVgT~~ll~ 350 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAP-----LGIEVALLTGSLKGKRRKELLETIASGQ-------IHLVVGTHALIQ 350 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcc-----cCcEEEEEecCCCHHHHHHHHHHHhCCC-------CCEEEecHHHHh
Confidence 4779999999999999988888875432 3578999999999999888888887776 789999975432
Q ss_pred -cccCCCeEEEE
Q 008209 205 -SLTIDGIVYVI 215 (574)
Q Consensus 205 -gitip~v~~VI 215 (574)
++.+.++.+||
T Consensus 351 ~~~~~~~l~lvV 362 (630)
T TIGR00643 351 EKVEFKRLALVI 362 (630)
T ss_pred ccccccccceEE
Confidence 45566777666
No 188
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=78.51 E-value=9.6 Score=41.58 Aligned_cols=74 Identities=18% Similarity=0.212 Sum_probs=55.2
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc-----
Q 008209 126 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN----- 200 (574)
Q Consensus 126 ~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~----- 200 (574)
+..+||-+||++-+..+.....+... ...+....++|+.+...|..-++.- ..|+|||+
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~-----~~~~~~~cvyGG~~~~~Q~~~l~~g-----------vdiviaTPGRl~d 228 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGK-----SLRLRSTCVYGGAPKGPQLRDLERG-----------VDVVIATPGRLID 228 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcC-----CCCccEEEEeCCCCccHHHHHHhcC-----------CcEEEeCChHHHH
Confidence 44599999999988877777665321 2446789999999999887665533 58999996
Q ss_pred ccc-ccccCCCeEEEE
Q 008209 201 IAE-TSLTIDGIVYVI 215 (574)
Q Consensus 201 iae-~gitip~v~~VI 215 (574)
..| -.+++-.++|+|
T Consensus 229 ~le~g~~~l~~v~ylV 244 (519)
T KOG0331|consen 229 LLEEGSLNLSRVTYLV 244 (519)
T ss_pred HHHcCCccccceeEEE
Confidence 344 456777899988
No 189
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=78.27 E-value=2.4 Score=47.63 Aligned_cols=35 Identities=26% Similarity=0.231 Sum_probs=29.6
Q ss_pred cCCCeEEEchHHHHHHHhcC-CCCCCccEEEEecCC
Q 008209 7 VLLGGRYLTDGMLLREAMTD-PLLERYKVIVLDEAH 41 (574)
Q Consensus 7 ~~~~I~~~T~g~Ll~~l~~~-~~L~~~~~vIiDE~H 41 (574)
...+|+|++.-+|+..+... +.|.+++++||||+|
T Consensus 181 ~~AdivItNHalL~~~~~~~~~iLP~~~~lIiDEAH 216 (636)
T TIGR03117 181 RRCRILFCTHAMLGLAFRDKWGLLPQPDILIVDEAH 216 (636)
T ss_pred ccCCEEEECHHHHHHHhhhhcCCCCCCCEEEEeCCc
Confidence 35799999999999876443 578999999999999
No 190
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=78.21 E-value=1.8 Score=49.49 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=26.7
Q ss_pred CCCeEEEchHHH-HHHH----hc---CCCCCCccEEEEecCCC
Q 008209 8 LLGGRYLTDGML-LREA----MT---DPLLERYKVIVLDEAHE 42 (574)
Q Consensus 8 ~~~I~~~T~g~L-l~~l----~~---~~~L~~~~~vIiDE~He 42 (574)
+.+|+|+|||.| .+.| .. +..+.++.++||||||.
T Consensus 164 ~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDs 206 (762)
T TIGR03714 164 NSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDS 206 (762)
T ss_pred CCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhh
Confidence 579999999999 3333 22 23478999999999994
No 191
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=78.09 E-value=17 Score=42.15 Aligned_cols=128 Identities=16% Similarity=0.126 Sum_probs=88.2
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhc---------CCC----CCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCC
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNM---------GDQ----VGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPP 191 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~---------~~~----~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~ 191 (574)
-+.++|||-.+....+.+..+|+-....- ... ..+...+.+.|..+..+|.+..+.|....+- -
T Consensus 1141 IGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~Nl---R 1217 (1567)
T KOG1015|consen 1141 IGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNL---R 1217 (1567)
T ss_pred hcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccc---e
Confidence 37789999888877777666665422110 000 1233567899999999999887666554321 1
Q ss_pred CcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEEeecccccccc
Q 008209 192 GRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNN 270 (574)
Q Consensus 192 ~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl~t~~~~~~ 270 (574)
.|-.+|+|-...-||++=...-||-++- .|||... .+.+=|+-|-|-+.|-..|||......++
T Consensus 1218 aRl~LISTRAGsLGiNLvAANRVIIfDa----sWNPSyD-----------tQSIFRvyRfGQtKPvyiYRfiAqGTmEe 1281 (1567)
T KOG1015|consen 1218 ARLFLISTRAGSLGINLVAANRVIIFDA----SWNPSYD-----------TQSIFRVYRFGQTKPVYIYRFIAQGTMEE 1281 (1567)
T ss_pred eEEEEEeeccCccccceeecceEEEEec----ccCCccc-----------hHHHHHHHhhcCcCceeehhhhhcccHHH
Confidence 2788999999999999987776663332 3444333 36677999999999999999988765543
No 192
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=77.82 E-value=23 Score=33.28 Aligned_cols=75 Identities=19% Similarity=0.175 Sum_probs=52.5
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccc---
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNI--- 201 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~i--- 201 (574)
.++.+||.+|+.+-+....+.+.+... ..+..+..++|+.+..+....++ +. ..|+|+|+-
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~----~~-------~~iiv~T~~~l~ 131 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGK-----HTNLKVVVIYGGTSIDKQIRKLK----RG-------PHIVVATPGRLL 131 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhc-----cCCceEEEEECCCCHHHHHHHhc----CC-------CCEEEEChHHHH
Confidence 467899999999999988888776432 14677888999998776655544 12 579999952
Q ss_pred --c-cccccCCCeEEEE
Q 008209 202 --A-ETSLTIDGIVYVI 215 (574)
Q Consensus 202 --a-e~gitip~v~~VI 215 (574)
. .....++++.++|
T Consensus 132 ~~l~~~~~~~~~l~~lI 148 (203)
T cd00268 132 DLLERGKLDLSKVKYLV 148 (203)
T ss_pred HHHHcCCCChhhCCEEE
Confidence 2 2235566777665
No 193
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=76.90 E-value=1.9 Score=49.96 Aligned_cols=35 Identities=11% Similarity=0.102 Sum_probs=27.7
Q ss_pred CCCeEEEchHHH-HHHHhcCC-CCC-------CccEEEEecCCC
Q 008209 8 LLGGRYLTDGML-LREAMTDP-LLE-------RYKVIVLDEAHE 42 (574)
Q Consensus 8 ~~~I~~~T~g~L-l~~l~~~~-~L~-------~~~~vIiDE~He 42 (574)
+.+|+|+|||.| ++.|..+. .++ ++.++|||||+.
T Consensus 183 ~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADs 226 (970)
T PRK12899 183 QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDS 226 (970)
T ss_pred CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhh
Confidence 368999999999 88876653 233 568999999994
No 194
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=76.47 E-value=1.7 Score=49.45 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=27.7
Q ss_pred CCeEEEchHHH-HHHHhcC-------CCCCCccEEEEecCCC
Q 008209 9 LGGRYLTDGML-LREAMTD-------PLLERYKVIVLDEAHE 42 (574)
Q Consensus 9 ~~I~~~T~g~L-l~~l~~~-------~~L~~~~~vIiDE~He 42 (574)
.+|+|+|+|.| ++.|..+ -.+.++.++||||+|.
T Consensus 146 ~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs 187 (745)
T TIGR00963 146 CDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDS 187 (745)
T ss_pred CCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHH
Confidence 58999999999 6666443 2578999999999995
No 195
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=76.32 E-value=3.7 Score=46.84 Aligned_cols=75 Identities=19% Similarity=0.260 Sum_probs=61.6
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccc
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 204 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~ 204 (574)
.+.++||-+|-.+....+...+..++ +..+..+||+|++.+|...+.....|. .+|||-|=-| -
T Consensus 244 ~GkqvLvLVPEI~Ltpq~~~rf~~rF--------g~~v~vlHS~Ls~~er~~~W~~~~~G~-------~~vVIGtRSA-l 307 (730)
T COG1198 244 QGKQVLVLVPEIALTPQLLARFKARF--------GAKVAVLHSGLSPGERYRVWRRARRGE-------ARVVIGTRSA-L 307 (730)
T ss_pred cCCEEEEEeccccchHHHHHHHHHHh--------CCChhhhcccCChHHHHHHHHHHhcCC-------ceEEEEechh-h
Confidence 46799999999999999999998764 367899999999999999999999998 8999988543 2
Q ss_pred cccCCCeEEEE
Q 008209 205 SLTIDGIVYVI 215 (574)
Q Consensus 205 gitip~v~~VI 215 (574)
-.-+++...||
T Consensus 308 F~Pf~~LGLII 318 (730)
T COG1198 308 FLPFKNLGLII 318 (730)
T ss_pred cCchhhccEEE
Confidence 33556666655
No 196
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=76.28 E-value=2.8 Score=41.40 Aligned_cols=34 Identities=29% Similarity=0.141 Sum_probs=30.3
Q ss_pred CCCeEEEchHHHHHHHhcCCC-CCCccEEEEecCC
Q 008209 8 LLGGRYLTDGMLLREAMTDPL-LERYKVIVLDEAH 41 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~~-L~~~~~vIiDE~H 41 (574)
-.+|-++|||+|...+.++.+ ++++.+||||-=|
T Consensus 177 ~~~i~vGTP~Rl~kLle~~~L~l~~l~~ivlD~s~ 211 (252)
T PF14617_consen 177 RVHIAVGTPGRLSKLLENGALSLSNLKRIVLDWSY 211 (252)
T ss_pred CceEEEeChHHHHHHHHcCCCCcccCeEEEEcCCc
Confidence 478999999999999988774 8999999999876
No 197
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=75.05 E-value=8.9 Score=41.23 Aligned_cols=74 Identities=15% Similarity=0.210 Sum_probs=53.4
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc-----
Q 008209 126 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN----- 200 (574)
Q Consensus 126 ~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~----- 200 (574)
...+||.+|+++-+..+++.+..... ..++.+..++|+.+...+..++... ..|||+|+
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~-----~~~~~v~~~~gg~~~~~~~~~l~~~-----------~~IlV~Tp~rl~~ 136 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAK-----HTHLDIATITGGVAYMNHAEVFSEN-----------QDIVVATPGRLLQ 136 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHc-----cCCcEEEEEECCCCHHHHHHHhcCC-----------CCEEEEChHHHHH
Confidence 46799999999988888877765332 2457899999999988887766432 57999996
Q ss_pred -cccccccCCCeEEEE
Q 008209 201 -IAETSLTIDGIVYVI 215 (574)
Q Consensus 201 -iae~gitip~v~~VI 215 (574)
+....++..++.+||
T Consensus 137 ~~~~~~~~~~~v~~lV 152 (434)
T PRK11192 137 YIKEENFDCRAVETLI 152 (434)
T ss_pred HHHcCCcCcccCCEEE
Confidence 122345566676665
No 198
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=74.39 E-value=12 Score=40.53 Aligned_cols=75 Identities=20% Similarity=0.266 Sum_probs=54.5
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc-----
Q 008209 126 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN----- 200 (574)
Q Consensus 126 ~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~----- 200 (574)
...+||.+||++-+..+++.+...... ..++.+..++|+.+...|...+.. + ..|+|+|+
T Consensus 72 ~~~~lil~PtreLa~Q~~~~~~~~~~~----~~~~~v~~~~Gg~~~~~~~~~l~~---~--------~~IvV~Tp~rl~~ 136 (460)
T PRK11776 72 RVQALVLCPTRELADQVAKEIRRLARF----IPNIKVLTLCGGVPMGPQIDSLEH---G--------AHIIVGTPGRILD 136 (460)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhh----CCCcEEEEEECCCChHHHHHHhcC---C--------CCEEEEChHHHHH
Confidence 457999999999888888877653321 246789999999998887665552 2 57999994
Q ss_pred ccc-ccccCCCeEEEE
Q 008209 201 IAE-TSLTIDGIVYVI 215 (574)
Q Consensus 201 iae-~gitip~v~~VI 215 (574)
.+. ..+++.++.+||
T Consensus 137 ~l~~~~~~l~~l~~lV 152 (460)
T PRK11776 137 HLRKGTLDLDALNTLV 152 (460)
T ss_pred HHHcCCccHHHCCEEE
Confidence 333 356778888776
No 199
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=72.31 E-value=12 Score=40.06 Aligned_cols=74 Identities=15% Similarity=0.129 Sum_probs=53.1
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc-----
Q 008209 126 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN----- 200 (574)
Q Consensus 126 ~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~----- 200 (574)
+..+||.+|+++-+..+.+.+..... ..++.+..++|+.+...+...++. + ..|||+|+
T Consensus 83 ~~~~lil~PtreLa~Qi~~~~~~l~~-----~~~~~v~~~~gg~~~~~~~~~l~~---~--------~~IlV~TP~~l~~ 146 (423)
T PRK04837 83 QPRALIMAPTRELAVQIHADAEPLAQ-----ATGLKLGLAYGGDGYDKQLKVLES---G--------VDILIGTTGRLID 146 (423)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHhc-----cCCceEEEEECCCCHHHHHHHhcC---C--------CCEEEECHHHHHH
Confidence 45799999999988888777765332 235788889999887776655542 1 47999997
Q ss_pred -cccccccCCCeEEEE
Q 008209 201 -IAETSLTIDGIVYVI 215 (574)
Q Consensus 201 -iae~gitip~v~~VI 215 (574)
+-...+++.++.+||
T Consensus 147 ~l~~~~~~l~~v~~lV 162 (423)
T PRK04837 147 YAKQNHINLGAIQVVV 162 (423)
T ss_pred HHHcCCcccccccEEE
Confidence 223456778888777
No 200
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=71.07 E-value=10 Score=42.47 Aligned_cols=74 Identities=8% Similarity=0.121 Sum_probs=53.4
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc-----
Q 008209 126 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN----- 200 (574)
Q Consensus 126 ~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~----- 200 (574)
...+||.+|+++-+..+++.+.+... ..++.+..+||+.+...|...++.. ..|||+|+
T Consensus 84 ~~raLIl~PTreLa~Qi~~~~~~l~~-----~~~i~v~~l~Gg~~~~~q~~~l~~~-----------~dIiV~TP~rL~~ 147 (572)
T PRK04537 84 DPRALILAPTRELAIQIHKDAVKFGA-----DLGLRFALVYGGVDYDKQRELLQQG-----------VDVIIATPGRLID 147 (572)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHhc-----cCCceEEEEECCCCHHHHHHHHhCC-----------CCEEEECHHHHHH
Confidence 46899999999999888888765332 2457899999999988887665431 57999995
Q ss_pred cccc--cccCCCeEEEE
Q 008209 201 IAET--SLTIDGIVYVI 215 (574)
Q Consensus 201 iae~--gitip~v~~VI 215 (574)
.+.. .+.+.++.+||
T Consensus 148 ~l~~~~~~~l~~v~~lV 164 (572)
T PRK04537 148 YVKQHKVVSLHACEICV 164 (572)
T ss_pred HHHhccccchhheeeeE
Confidence 3332 35566676554
No 201
>PRK14701 reverse gyrase; Provisional
Probab=70.91 E-value=11 Score=47.25 Aligned_cols=67 Identities=16% Similarity=0.137 Sum_probs=53.2
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccc
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNI 201 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~i 201 (574)
.+..+||.+||++=+..+.+.+.......+ .++.+..+||+++..+|..+++....|. .+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~---~~v~v~~~~g~~s~~e~~~~~~~l~~g~-------~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKAN---LDVRLVYYHSNLRKKEKEEFLERIENGD-------FDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcC---CceeEEEEeCCCCHHHHHHHHHHHhcCC-------CCEEEECCc
Confidence 456899999999999999888876433221 3567899999999999988877777665 789999974
No 202
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=70.78 E-value=6.6 Score=39.85 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=26.8
Q ss_pred CCCeEEEchHHHHHHHhcC---CCCCCccEEEEecCCC
Q 008209 8 LLGGRYLTDGMLLREAMTD---PLLERYKVIVLDEAHE 42 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~---~~L~~~~~vIiDE~He 42 (574)
..+|+|++.-+|+...... ..+ +..+|||||+|.
T Consensus 211 ~Adivi~ny~yll~~~~r~~~~~~l-~~~~lIiDEAHn 247 (289)
T smart00489 211 FANVVVLPYQYLLDPKIRQALSIEL-KDSIVIFDEAHN 247 (289)
T ss_pred cCCEEEECHHHHhcHHHHHHhcccc-cccEEEEeCccC
Confidence 5899999999998766432 234 589999999994
No 203
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=70.78 E-value=6.6 Score=39.85 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=26.8
Q ss_pred CCCeEEEchHHHHHHHhcC---CCCCCccEEEEecCCC
Q 008209 8 LLGGRYLTDGMLLREAMTD---PLLERYKVIVLDEAHE 42 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~---~~L~~~~~vIiDE~He 42 (574)
..+|+|++.-+|+...... ..+ +..+|||||+|.
T Consensus 211 ~Adivi~ny~yll~~~~r~~~~~~l-~~~~lIiDEAHn 247 (289)
T smart00488 211 FANVVVLPYQYLLDPKIRQALSIEL-KDSIVIFDEAHN 247 (289)
T ss_pred cCCEEEECHHHHhcHHHHHHhcccc-cccEEEEeCccC
Confidence 5899999999998766432 234 589999999994
No 204
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=68.55 E-value=15 Score=39.78 Aligned_cols=73 Identities=8% Similarity=0.117 Sum_probs=52.9
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc------
Q 008209 127 GDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN------ 200 (574)
Q Consensus 127 g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~------ 200 (574)
..+||.+|+++-+..+.+.+.+... ..++.+..++|+.+.+++...+.. . ..|||+|+
T Consensus 76 ~~aLil~PtreLa~Qi~~~~~~~~~-----~~~~~~~~~~gg~~~~~~~~~l~~----~-------~~IiV~TP~rL~~~ 139 (456)
T PRK10590 76 VRALILTPTRELAAQIGENVRDYSK-----YLNIRSLVVFGGVSINPQMMKLRG----G-------VDVLVATPGRLLDL 139 (456)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhc-----cCCCEEEEEECCcCHHHHHHHHcC----C-------CcEEEEChHHHHHH
Confidence 3699999999998888888776432 245778889999988776544331 2 58999996
Q ss_pred cccccccCCCeEEEE
Q 008209 201 IAETSLTIDGIVYVI 215 (574)
Q Consensus 201 iae~gitip~v~~VI 215 (574)
.....+++.++.+||
T Consensus 140 ~~~~~~~l~~v~~lV 154 (456)
T PRK10590 140 EHQNAVKLDQVEILV 154 (456)
T ss_pred HHcCCcccccceEEE
Confidence 234456778888766
No 205
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=67.76 E-value=8.8 Score=46.65 Aligned_cols=68 Identities=19% Similarity=0.275 Sum_probs=50.2
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccc
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNI 201 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~i 201 (574)
.+.++||.+||++-+..+++.+.+.....+ .....+..+||+++..+|...++...+|. ..|||+|+-
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~--i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~-------~dIlV~Tp~ 187 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAG--VGTVNIGAYHSRLPTKEKKEFMERIENGD-------FDILITTTM 187 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcC--CceeeeeeecCCCCHHHHHHHHHHHhcCC-------CCEEEECHH
Confidence 467899999999999999888877543211 11223557899999998877776666555 689999973
No 206
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=67.76 E-value=17 Score=39.26 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=55.7
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccc--
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNI-- 201 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~i-- 201 (574)
.+...|||.+||++-.-.++....+.. + ...+.++-.-|||+-..|..++... ..|||||+=
T Consensus 250 ~~~TRVLVL~PTRELaiQv~sV~~qla-q----Ft~I~~~L~vGGL~lk~QE~~LRs~-----------PDIVIATPGRl 313 (691)
T KOG0338|consen 250 VAATRVLVLVPTRELAIQVHSVTKQLA-Q----FTDITVGLAVGGLDLKAQEAVLRSR-----------PDIVIATPGRL 313 (691)
T ss_pred CcceeEEEEeccHHHHHHHHHHHHHHH-h----hccceeeeeecCccHHHHHHHHhhC-----------CCEEEecchhH
Confidence 345689999999997666655554421 1 3457888889999999999998876 479999962
Q ss_pred -----ccccccCCCeEEEE
Q 008209 202 -----AETSLTIDGIVYVI 215 (574)
Q Consensus 202 -----ae~gitip~v~~VI 215 (574)
-..|+|+++|.+.|
T Consensus 314 IDHlrNs~sf~ldsiEVLv 332 (691)
T KOG0338|consen 314 IDHLRNSPSFNLDSIEVLV 332 (691)
T ss_pred HHHhccCCCccccceeEEE
Confidence 23567777777655
No 207
>PRK06526 transposase; Provisional
Probab=67.06 E-value=13 Score=37.03 Aligned_cols=72 Identities=17% Similarity=0.206 Sum_probs=40.4
Q ss_pred CCCeEEEchHHHHHHHhc---CC-------CCCCccEEEEecCCCCCcch---HHHHHHHHHHHhhCCCccEEEEccCCC
Q 008209 8 LLGGRYLTDGMLLREAMT---DP-------LLERYKVIVLDEAHERTLAT---DVLFGLLKEVLKNRPDLKLVVMSATLE 74 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~---~~-------~L~~~~~vIiDE~HeR~~~~---d~ll~~lk~~~~~~~~~klvlmSATl~ 74 (574)
+..+.|.|..-+++.+.. +. .+.++++|||||+|--.... +.+..++... .....+|+.|.. .
T Consensus 126 g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r---~~~~s~IitSn~-~ 201 (254)
T PRK06526 126 GHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSR---YERASLIVTSNK-P 201 (254)
T ss_pred CCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCCCCHHHHHHHHHHHHHH---HhcCCEEEEcCC-C
Confidence 455777887777776632 11 35789999999999432222 2334444322 223356666655 4
Q ss_pred HHHHHhhhC
Q 008209 75 AEKFQGYFY 83 (574)
Q Consensus 75 ~~~~~~~f~ 83 (574)
.....+.|+
T Consensus 202 ~~~w~~~~~ 210 (254)
T PRK06526 202 FGRWGEVFG 210 (254)
T ss_pred HHHHHHHcC
Confidence 444444444
No 208
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=66.21 E-value=10 Score=43.43 Aligned_cols=49 Identities=33% Similarity=0.609 Sum_probs=29.2
Q ss_pred HHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCC-CccEEEEc
Q 008209 19 LLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRP-DLKLVVMS 70 (574)
Q Consensus 19 Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~-~~klvlmS 70 (574)
+++.+...|.-.+++++||||+|. +..+..=.+|| .+...+ +.++|+.+
T Consensus 107 LIe~a~~~P~~gr~KVIIIDEah~--LT~~A~NALLK-tLEEPP~~v~FILaT 156 (830)
T PRK07003 107 LLERAVYAPVDARFKVYMIDEVHM--LTNHAFNAMLK-TLEEPPPHVKFILAT 156 (830)
T ss_pred HHHHHHhccccCCceEEEEeChhh--CCHHHHHHHHH-HHHhcCCCeEEEEEE
Confidence 344444456667899999999995 44444444455 444443 45555543
No 209
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.11 E-value=8.6 Score=43.27 Aligned_cols=46 Identities=28% Similarity=0.527 Sum_probs=28.9
Q ss_pred HHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhC-CCccEEEEc
Q 008209 22 EAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR-PDLKLVVMS 70 (574)
Q Consensus 22 ~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~-~~~klvlmS 70 (574)
.+...|...+++++||||+|. ++....=.+|| .+... +++++|+.+
T Consensus 115 ~~~~~P~~gr~KViIIDEah~--Ls~~AaNALLK-TLEEPP~~v~FILaT 161 (700)
T PRK12323 115 KAVYAPTAGRFKVYMIDEVHM--LTNHAFNAMLK-TLEEPPEHVKFILAT 161 (700)
T ss_pred HHHhchhcCCceEEEEEChHh--cCHHHHHHHHH-hhccCCCCceEEEEe
Confidence 333446677899999999995 55555555555 44443 355555554
No 210
>PRK11054 helD DNA helicase IV; Provisional
Probab=65.88 E-value=1.8e+02 Score=33.34 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=27.4
Q ss_pred hcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEE
Q 008209 24 MTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVM 69 (574)
Q Consensus 24 ~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlm 69 (574)
..++.+..+++|+|||++.-+ ..-+.+++.+....++..+++.
T Consensus 423 ~~~~~~~~~~~IlVDE~QD~s---~~q~~ll~~l~~~~~~~~l~~V 465 (684)
T PRK11054 423 EKGRFISPWKHILVDEFQDIS---PQRAALLAALRKQNSQTTLFAV 465 (684)
T ss_pred hhhhhhhcccEEEEEccccCC---HHHHHHHHHHhccCCCCeEEEE
Confidence 345567789999999999633 3445566665544444555554
No 211
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=62.47 E-value=5.3 Score=46.10 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=26.1
Q ss_pred CCCeEEEchHHH-----HHHHhcC---CCCCCccEEEEecCCC
Q 008209 8 LLGGRYLTDGML-----LREAMTD---PLLERYKVIVLDEAHE 42 (574)
Q Consensus 8 ~~~I~~~T~g~L-----l~~l~~~---~~L~~~~~vIiDE~He 42 (574)
+.+|+|+|+|.| .+.+... ..+.++.++||||||.
T Consensus 168 ~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDs 210 (790)
T PRK09200 168 EADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDS 210 (790)
T ss_pred CCCEEEECCccccchhHHhccccchhhhcccccceEEEecccc
Confidence 468999999998 2333222 2578999999999993
No 212
>PTZ00110 helicase; Provisional
Probab=62.09 E-value=17 Score=40.40 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=51.0
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc-----
Q 008209 126 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN----- 200 (574)
Q Consensus 126 ~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~----- 200 (574)
+..+||.+|+++-+..+.+.+.+... ...+.+..++++.+...|...+.. + ..|||+|+
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~~~~-----~~~i~~~~~~gg~~~~~q~~~l~~---~--------~~IlVaTPgrL~d 266 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNKFGA-----SSKIRNTVAYGGVPKRGQIYALRR---G--------VEILIACPGRLID 266 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHhc-----ccCccEEEEeCCCCHHHHHHHHHc---C--------CCEEEECHHHHHH
Confidence 34689999999888877777765321 235678888999988777655432 2 47999996
Q ss_pred ccccc-ccCCCeEEEE
Q 008209 201 IAETS-LTIDGIVYVI 215 (574)
Q Consensus 201 iae~g-itip~v~~VI 215 (574)
.++.+ +++..+++||
T Consensus 267 ~l~~~~~~l~~v~~lV 282 (545)
T PTZ00110 267 FLESNVTNLRRVTYLV 282 (545)
T ss_pred HHHcCCCChhhCcEEE
Confidence 44433 5667777665
No 213
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=62.06 E-value=17 Score=39.22 Aligned_cols=74 Identities=20% Similarity=0.248 Sum_probs=51.7
Q ss_pred CCCEEE-EcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc----
Q 008209 126 SGDILV-FLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN---- 200 (574)
Q Consensus 126 ~g~iLV-Fl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~---- 200 (574)
.|+|+| .+||++-+..+.....+- .+..++.++.+||+.+.-+|.+.++ .| --+||||+
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf-----~K~ygl~~v~~ygGgsk~eQ~k~Lk---~g--------~EivVaTPgRli 358 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKF-----GKAYGLRVVAVYGGGSKWEQSKELK---EG--------AEIVVATPGRLI 358 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHh-----hhhccceEEEeecCCcHHHHHHhhh---cC--------CeEEEechHHHH
Confidence 566655 569998777665555441 1135789999999999999988776 33 47999997
Q ss_pred --cccccccCCCeEEEE
Q 008209 201 --IAETSLTIDGIVYVI 215 (574)
Q Consensus 201 --iae~gitip~v~~VI 215 (574)
+---++|+-.|+|.|
T Consensus 359 d~VkmKatn~~rvS~LV 375 (731)
T KOG0339|consen 359 DMVKMKATNLSRVSYLV 375 (731)
T ss_pred HHHHhhcccceeeeEEE
Confidence 222466777777654
No 214
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=61.73 E-value=15 Score=43.79 Aligned_cols=34 Identities=32% Similarity=0.570 Sum_probs=29.3
Q ss_pred CCCeEEEchHHHHHHHhc-CCCCCCccEEEEecCC
Q 008209 8 LLGGRYLTDGMLLREAMT-DPLLERYKVIVLDEAH 41 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~-~~~L~~~~~vIiDE~H 41 (574)
..+|+|+-.-.|+..+.. ++.|..++++||||+|
T Consensus 431 ~AdivItNHalLl~dl~~~~~ilp~~~~lViDEAH 465 (928)
T PRK08074 431 FADLVITNHALLLTDLTSEEPLLPSYEHIIIDEAH 465 (928)
T ss_pred cCCEEEECHHHHHHHHhhhcccCCCCCeEEEECCc
Confidence 478999999999998844 4578999999999999
No 215
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=61.51 E-value=16 Score=35.91 Aligned_cols=76 Identities=20% Similarity=0.288 Sum_probs=55.3
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc-----
Q 008209 126 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN----- 200 (574)
Q Consensus 126 ~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~----- 200 (574)
.-.+||.|.+++-+-.+.+.... ++.-.+..++..++||++...-..+++.- ..|+|+|+
T Consensus 110 ~vsvlvmchtrelafqi~~ey~r----fskymP~vkvaVFfGG~~Ikkdee~lk~~-----------PhivVgTPGrilA 174 (387)
T KOG0329|consen 110 QVSVLVMCHTRELAFQISKEYER----FSKYMPSVKVSVFFGGLFIKKDEELLKNC-----------PHIVVGTPGRILA 174 (387)
T ss_pred eEEEEEEeccHHHHHHHHHHHHH----HHhhCCCceEEEEEcceeccccHHHHhCC-----------CeEEEcCcHHHHH
Confidence 34689999998766555444433 33335789999999999987777776652 57999997
Q ss_pred -cccccccCCCeEE-EEc
Q 008209 201 -IAETSLTIDGIVY-VID 216 (574)
Q Consensus 201 -iae~gitip~v~~-VID 216 (574)
+-+.++++.+|++ |+|
T Consensus 175 Lvr~k~l~lk~vkhFvlD 192 (387)
T KOG0329|consen 175 LVRNRSLNLKNVKHFVLD 192 (387)
T ss_pred HHHhccCchhhcceeehh
Confidence 4567899999985 555
No 216
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=60.88 E-value=15 Score=34.43 Aligned_cols=23 Identities=13% Similarity=0.289 Sum_probs=18.7
Q ss_pred HHHHhcCCCCCCccEEEEecCCC
Q 008209 20 LREAMTDPLLERYKVIVLDEAHE 42 (574)
Q Consensus 20 l~~l~~~~~L~~~~~vIiDE~He 42 (574)
++.+...|......+|||||+|.
T Consensus 85 ~~~~~~~~~~~~~kviiide~~~ 107 (188)
T TIGR00678 85 VEFLSRTPQESGRRVVIIEDAER 107 (188)
T ss_pred HHHHccCcccCCeEEEEEechhh
Confidence 45555677788999999999996
No 217
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=60.71 E-value=24 Score=38.47 Aligned_cols=75 Identities=13% Similarity=0.127 Sum_probs=51.7
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc-----
Q 008209 126 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN----- 200 (574)
Q Consensus 126 ~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~----- 200 (574)
...+||.+|+++-+....+.+..... ..++.+..++|+.+...+.+-+.. +. ..|||+|+
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~-----~~~~~v~~~~gg~~~~~~~~~~~~---~~-------~~Iiv~TP~~Ll~ 226 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTK-----YTGLNVMTFVGGMDFDKQLKQLEA---RF-------CDILVATPGRLLD 226 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhc-----cCCCEEEEEEccCChHHHHHHHhC---CC-------CCEEEECHHHHHH
Confidence 45799999999998888887765322 235778899999877666544332 12 57999996
Q ss_pred -cccccccCCCeEEEE
Q 008209 201 -IAETSLTIDGIVYVI 215 (574)
Q Consensus 201 -iae~gitip~v~~VI 215 (574)
.....+.+.++++||
T Consensus 227 ~~~~~~~~l~~l~~lV 242 (475)
T PRK01297 227 FNQRGEVHLDMVEVMV 242 (475)
T ss_pred HHHcCCcccccCceEE
Confidence 223355666777666
No 218
>PF13173 AAA_14: AAA domain
Probab=60.26 E-value=10 Score=33.06 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=25.7
Q ss_pred CccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccC
Q 008209 31 RYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSAT 72 (574)
Q Consensus 31 ~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSAT 72 (574)
+-.+|+|||+|.- .+ +...++.+....++.++|+++-.
T Consensus 61 ~~~~i~iDEiq~~-~~---~~~~lk~l~d~~~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYL-PD---WEDALKFLVDNGPNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhh-cc---HHHHHHHHHHhccCceEEEEccc
Confidence 6689999999952 22 34445555555568898887554
No 219
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=59.59 E-value=8.1 Score=33.40 Aligned_cols=37 Identities=27% Similarity=0.577 Sum_probs=26.6
Q ss_pred cEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccC
Q 008209 33 KVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSAT 72 (574)
Q Consensus 33 ~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSAT 72 (574)
.+|||||+|. +..+-.+..++.+.. ..++++|+.+-.
T Consensus 89 ~~lviDe~~~--l~~~~~l~~l~~l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADH--LFSDEFLEFLRSLLN-ESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHH--HHTHHHHHHHHHHTC-SCBEEEEEEESS
T ss_pred eEEEEeChHh--cCCHHHHHHHHHHHh-CCCCeEEEEECh
Confidence 6899999996 313666777777655 667888877654
No 220
>PF05729 NACHT: NACHT domain
Probab=58.97 E-value=29 Score=30.98 Aligned_cols=58 Identities=21% Similarity=0.365 Sum_probs=39.9
Q ss_pred EEEEecCCCCCcchHH-----HHHHHHHHHhh--CCCccEEEEccCCCHHHHHhhhCCCCeEEeC
Q 008209 34 VIVLDEAHERTLATDV-----LFGLLKEVLKN--RPDLKLVVMSATLEAEKFQGYFYGAPLMKVP 91 (574)
Q Consensus 34 ~vIiDE~HeR~~~~d~-----ll~~lk~~~~~--~~~~klvlmSATl~~~~~~~~f~~~~~i~~~ 91 (574)
++|||=++|-....+. ...+++.++.. .++.++++.|.+-....+.+++.....+.++
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~ 148 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELE 148 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEEC
Confidence 5899999975543332 55556666654 6789999999887777788887655444443
No 221
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=58.33 E-value=50 Score=37.28 Aligned_cols=93 Identities=16% Similarity=0.134 Sum_probs=70.3
Q ss_pred CCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeee
Q 008209 158 GPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVS 237 (574)
Q Consensus 158 ~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~ 237 (574)
.++....+||++...+|+.+.+.|...+ .+.+-.+++=..-..|+++-+-.++|=.|+ .+.
T Consensus 769 ~g~~y~si~Gqv~vK~Rq~iv~~FN~~k----~~~rVmLlSLtAGGVGLNL~GaNHlilvDl---------------HWN 829 (901)
T KOG4439|consen 769 GGHIYTSITGQVLVKDRQEIVDEFNQEK----GGARVMLLSLTAGGVGLNLIGANHLILVDL---------------HWN 829 (901)
T ss_pred CCeeeeeecCccchhHHHHHHHHHHhcc----CCceEEEEEEccCcceeeecccceEEEEec---------------ccC
Confidence 6788999999999999998877765432 012666777777778999999999994443 333
Q ss_pred eccHhhHHHhcccCCCCCCCeEEeeccccccc
Q 008209 238 PISKASAHQRSGRAGRTQPGKCFRLYTEKSFN 269 (574)
Q Consensus 238 ~is~~~~~QR~GRaGR~~~G~~~rl~t~~~~~ 269 (574)
|.=-.+|--|.-|.|-..+=..||+..+...+
T Consensus 830 PaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvE 861 (901)
T KOG4439|consen 830 PALEQQACDRIYRMGQKKDVFIHRLMCKGTVE 861 (901)
T ss_pred HHHHHHHHHHHHHhcccCceEEEEEEecCcHH
Confidence 54556777789999998888899998877664
No 222
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=57.59 E-value=1.4e+02 Score=34.82 Aligned_cols=154 Identities=17% Similarity=0.214 Sum_probs=80.9
Q ss_pred cEEEEccCC-CHHHHHhhhCC--------CCeEE--------e-CC-eeeceeEEeecCCchhHHHHHHHHHHHHHhcCC
Q 008209 65 KLVVMSATL-EAEKFQGYFYG--------APLMK--------V-PG-RLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEP 125 (574)
Q Consensus 65 klvlmSATl-~~~~~~~~f~~--------~~~i~--------~-~g-r~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~ 125 (574)
-||+.|.|+ ..+.|+.-|+- ..++. + .| .-....-.|......+|....-+.+....+.-+
T Consensus 482 sIiLtSGTLsP~~s~~~El~~~f~~~lEn~hii~~~qv~~~vv~~Gp~~~ql~sty~nr~~~ey~~~lg~~i~~v~rvVp 561 (945)
T KOG1132|consen 482 SIILTSGTLSPMDSFASELGLEFKIQLENPHIINKSQVWVGVVPKGPDGAQLDSTYGNRFTPEYLSELGEAILNVARVVP 561 (945)
T ss_pred eEEEecccccCchhHHHHhCCccceeeecchhccccceEEEeeccCCCccccccccccccCHHHHHHHHHHHHHHHhhcc
Confidence 388999999 45666655531 11110 0 01 011122234444456677766666666666556
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHH--HHhhcCCCCCCeEEEEcCCCCCHH----HHhhhcCCCCCCCCCCCCCCcEEEEec
Q 008209 126 SGDILVFLTGEEEIEDACRKITK--EITNMGDQVGPVKVVPLYSTLPPA----MQQKIFEPAPPPSKEGGPPGRKIVVST 199 (574)
Q Consensus 126 ~g~iLVFl~~~~ei~~~~~~L~~--~~~~~~~~~~~~~v~~lhs~l~~~----~q~~v~~~~~~g~~~~~~~~~kvivaT 199 (574)
.| +|+|+|+..-.+++....+. ....+.. ..++.+-|--+..-.+ .-+.+..+...|. .-.-|+=
T Consensus 562 ~G-~L~FfPSY~vmdk~~tfw~~~~~we~~~~-vk~l~vEPr~k~~f~e~m~~y~~~i~~pes~ga-------~~~aVcR 632 (945)
T KOG1132|consen 562 YG-LLIFFPSYPVMDKLITFWQNRGLWERMEK-VKKLVVEPRSKSEFTEVMSRYYNAIADPESSGA-------VFFAVCR 632 (945)
T ss_pred cc-eEEeccchHHHHHHHHHHHcchHHHHhhc-ccCceeccCCccchHHHHHHHHHHhhCccccce-------EEEEEec
Confidence 66 99999999877776554443 1111111 2234455542222111 1123333333333 3445555
Q ss_pred ccccccccCCC--eEEEEcCCcccceeecC
Q 008209 200 NIAETSLTIDG--IVYVIDPGFAKQKVYNP 227 (574)
Q Consensus 200 ~iae~gitip~--v~~VID~g~~k~~~y~~ 227 (574)
--++.|+|.-| -+.||-+|+.--+.-|+
T Consensus 633 GKVSEGlDFsD~~~RaVI~tGlPyP~~~D~ 662 (945)
T KOG1132|consen 633 GKVSEGLDFSDDNGRAVIITGLPYPPVMDP 662 (945)
T ss_pred ccccCCCCccccCCceeEEecCCCCCCCCH
Confidence 56667888754 56888899865555554
No 223
>PF08148 DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961 This C-terminal domain is found in DOB1/SK12/helY-like DEAD box helicases [].; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; PDB: 4A4Z_A 2XGJ_B 3L9O_A.
Probab=57.22 E-value=14 Score=34.62 Aligned_cols=37 Identities=19% Similarity=0.316 Sum_probs=22.6
Q ss_pred ccCCCCcChhhhhhccCCC-CHHH-HHHHHhccCCCCchh
Q 008209 327 LDDDGNLTEMGEKMSEFPL-DPQM-SKMLVESPKYNCSNE 364 (574)
Q Consensus 327 ld~~~~lT~lG~~~~~lpl-~p~~-~~~ll~~~~~~c~~~ 364 (574)
||+++.+|+.|+.++++.. ++-+ +-+|..+ .|.-+++
T Consensus 1 id~~~~vt~kGr~a~~I~~~~eLl~te~l~~g-~f~~L~p 39 (180)
T PF08148_consen 1 IDEDNVVTLKGRVACEIYSEDELLLTELLFSG-VFDDLDP 39 (180)
T ss_dssp B-TTS-BSHHHHHHCC--SSTHHHHHHHHHCT-CCCCS-H
T ss_pred CCCCCccCHHHHHHHHHcCcccHHHHHHHHcC-CCCCCCH
Confidence 6899999999999999998 4444 5555555 4544433
No 224
>PRK08181 transposase; Validated
Probab=56.82 E-value=29 Score=34.75 Aligned_cols=73 Identities=16% Similarity=0.250 Sum_probs=44.1
Q ss_pred CCCeEEEchHHHHHHHhc---CC-------CCCCccEEEEecCCCCCcc---hHHHHHHHHHHHhhCCCccEEEEccCCC
Q 008209 8 LLGGRYLTDGMLLREAMT---DP-------LLERYKVIVLDEAHERTLA---TDVLFGLLKEVLKNRPDLKLVVMSATLE 74 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~---~~-------~L~~~~~vIiDE~HeR~~~---~d~ll~~lk~~~~~~~~~klvlmSATl~ 74 (574)
+..+.|+|..-|++.+.. +. .+.+++++||||++--..+ .+.++.++..... ... ++++.-.+
T Consensus 134 g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~---~~s-~IiTSN~~ 209 (269)
T PRK08181 134 GWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETSVLFELISARYE---RRS-ILITANQP 209 (269)
T ss_pred CCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHh---CCC-EEEEcCCC
Confidence 567889998888887732 22 2578999999999843332 2344555543222 234 44455556
Q ss_pred HHHHHhhhCC
Q 008209 75 AEKFQGYFYG 84 (574)
Q Consensus 75 ~~~~~~~f~~ 84 (574)
...+...|++
T Consensus 210 ~~~w~~~~~D 219 (269)
T PRK08181 210 FGEWNRVFPD 219 (269)
T ss_pred HHHHHHhcCC
Confidence 6666666653
No 225
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=56.60 E-value=19 Score=41.02 Aligned_cols=44 Identities=25% Similarity=0.477 Sum_probs=27.1
Q ss_pred cCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEc
Q 008209 25 TDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMS 70 (574)
Q Consensus 25 ~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmS 70 (574)
..|...++++|||||+|. +..+..-.++|.+-...+..++|+.+
T Consensus 113 ~~P~~gk~KVIIIDEad~--Ls~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 113 YAPTAGKYKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hhhhhCCcEEEEEECccc--cCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 346678999999999995 44444434444433233456666654
No 226
>PRK06835 DNA replication protein DnaC; Validated
Probab=56.49 E-value=30 Score=35.81 Aligned_cols=74 Identities=18% Similarity=0.194 Sum_probs=43.7
Q ss_pred CCCeEEEchHHHHHHHhc---C---------CCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCC-CccEEEEccCCC
Q 008209 8 LLGGRYLTDGMLLREAMT---D---------PLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRP-DLKLVVMSATLE 74 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~---~---------~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~-~~klvlmSATl~ 74 (574)
+..++|+|..-|++.+.. + ..+.+++++|||+++- ...++.....+-.++..|- .-+-+++|..+.
T Consensus 211 g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~-e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 211 GKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGT-EKITEFSKSELFNLINKRLLRQKKMIISTNLS 289 (329)
T ss_pred CCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCC-CCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 467899999999887732 1 1357899999999982 1233333333334433221 123355566666
Q ss_pred HHHHHhhh
Q 008209 75 AEKFQGYF 82 (574)
Q Consensus 75 ~~~~~~~f 82 (574)
.+.+.+.+
T Consensus 290 ~~el~~~~ 297 (329)
T PRK06835 290 LEELLKTY 297 (329)
T ss_pred HHHHHHHH
Confidence 66665544
No 227
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=55.89 E-value=27 Score=37.00 Aligned_cols=53 Identities=15% Similarity=0.252 Sum_probs=36.4
Q ss_pred CCCccEEEEecCCCCCcchHHHHHHHHHHHhh-CCC-ccEEEEccCCCHHHHHhhh
Q 008209 29 LERYKVIVLDEAHERTLATDVLFGLLKEVLKN-RPD-LKLVVMSATLEAEKFQGYF 82 (574)
Q Consensus 29 L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~-~~~-~klvlmSATl~~~~~~~~f 82 (574)
+.++++||||++. |+..-...+..++.++.. .++ -.++++|||...+.+.+.|
T Consensus 252 ~~~~DlVLIDTaG-r~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 252 SKDFDLVLVDTIG-KSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred hCCCCEEEEcCCC-CCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHH
Confidence 4789999999998 565433346666666653 334 4678899999766665544
No 228
>TIGR02647 DNA conserved hypothetical protein TIGR02647. Members of this family are found, so far, only in the Gammaproteobacteria. The function is unknown. The location on the chromosome usually is not far from housekeeping genes rather than in what is clearly, say, a prophage region. Some members have been annotated in public databases as DNA-binding protein inhibitor Id-2-related protein, putative transcriptional regulator, or hypothetical DNA binding protein.
Probab=55.77 E-value=14 Score=29.00 Aligned_cols=31 Identities=29% Similarity=0.355 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHcCCccC-CC-CcChhhhhhcc
Q 008209 312 ETLMRALEVLNYLGALDD-DG-NLTEMGEKMSE 342 (574)
Q Consensus 312 ~~l~~al~~L~~lgald~-~~-~lT~lG~~~~~ 342 (574)
..+..|.++|.+-|.|+. +| -||+.|...++
T Consensus 34 p~~i~a~~RLheKGLI~~pdGgyLT~~G~~~aE 66 (77)
T TIGR02647 34 PAAVAAAARLHEKGLTTQPDGGYLTSLGLEAAE 66 (77)
T ss_pred HHHHHHHHHHHHcCCccCCCCCEecHHHHHHHH
Confidence 457889999999999964 45 49999988764
No 229
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=55.47 E-value=9 Score=44.33 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=27.9
Q ss_pred CCCeEEEchHHH-HHHHhcCC-------CCCCccEEEEecCCC
Q 008209 8 LLGGRYLTDGML-LREAMTDP-------LLERYKVIVLDEAHE 42 (574)
Q Consensus 8 ~~~I~~~T~g~L-l~~l~~~~-------~L~~~~~vIiDE~He 42 (574)
..+|+|+|+|.| .+.|..+- .+..+.+.|||||+.
T Consensus 170 ~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDs 212 (830)
T PRK12904 170 AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDS 212 (830)
T ss_pred CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhh
Confidence 368999999999 77665432 368899999999993
No 230
>PRK07952 DNA replication protein DnaC; Validated
Probab=55.07 E-value=31 Score=34.08 Aligned_cols=75 Identities=12% Similarity=0.102 Sum_probs=47.3
Q ss_pred CCCeEEEchHHHHHHHhc-----CC-------CCCCccEEEEecCCCCCcchHHHHHHHHHHHhhC-CCccEEEEccCCC
Q 008209 8 LLGGRYLTDGMLLREAMT-----DP-------LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR-PDLKLVVMSATLE 74 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~-----~~-------~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~-~~~klvlmSATl~ 74 (574)
+..+.|+|..-|+..+.. +. .+.+++++||||++.-. .++.-..++-.++..| .+-+-++++.-++
T Consensus 127 g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~-~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 127 GKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQT-ESRYEKVIINQIVDRRSSSKRPTGMLTNSN 205 (244)
T ss_pred CCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCC-CCHHHHHHHHHHHHHHHhCCCCEEEeCCCC
Confidence 456788888888776642 11 26789999999999422 4555555555555533 2244555555667
Q ss_pred HHHHHhhhC
Q 008209 75 AEKFQGYFY 83 (574)
Q Consensus 75 ~~~~~~~f~ 83 (574)
.+.+.++++
T Consensus 206 ~~~l~~~~g 214 (244)
T PRK07952 206 MEEMTKLLG 214 (244)
T ss_pred HHHHHHHhC
Confidence 777777664
No 231
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=54.54 E-value=23 Score=32.44 Aligned_cols=47 Identities=28% Similarity=0.466 Sum_probs=29.9
Q ss_pred hcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhC-CCccEEEEccCC
Q 008209 24 MTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR-PDLKLVVMSATL 73 (574)
Q Consensus 24 ~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~-~~~klvlmSATl 73 (574)
...|.-.++.++||||+|. +..+..=++||- +... ++..+|+.+-..
T Consensus 95 ~~~~~~~~~KviiI~~ad~--l~~~a~NaLLK~-LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 95 SLSPSEGKYKVIIIDEADK--LTEEAQNALLKT-LEEPPENTYFILITNNP 142 (162)
T ss_dssp TSS-TTSSSEEEEEETGGG--S-HHHHHHHHHH-HHSTTTTEEEEEEES-G
T ss_pred HHHHhcCCceEEEeehHhh--hhHHHHHHHHHH-hcCCCCCEEEEEEECCh
Confidence 3445567899999999996 666666555554 4444 466677666554
No 232
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=54.48 E-value=23 Score=37.08 Aligned_cols=46 Identities=11% Similarity=0.255 Sum_probs=29.0
Q ss_pred HhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEc
Q 008209 23 AMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMS 70 (574)
Q Consensus 23 l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmS 70 (574)
+...+.-.++.+|||||+|. ++....-+++|.+-.-.++..+|+.|
T Consensus 133 l~~~~~~g~~rVviIDeAd~--l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 133 LSQTSGDGNWRIVIIDPADD--MNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred hhhccccCCceEEEEEchhh--cCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 33345567899999999996 56666556665543323344555554
No 233
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=54.45 E-value=52 Score=37.08 Aligned_cols=89 Identities=19% Similarity=0.218 Sum_probs=55.2
Q ss_pred EEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeecc
Q 008209 161 KVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPIS 240 (574)
Q Consensus 161 ~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is 240 (574)
.|-.+|-+-|.+-| .+.+.+.. .-.++-++|-+.+=+||+|-+||..++ ...||
T Consensus 524 ~VSSHYKNSPNDLQ--llsDAPaH--------~LFvLl~PVd~~~~~iPdvlcviQv~l----------------EG~is 577 (1011)
T KOG2036|consen 524 YVSSHYKNSPNDLQ--LLSDAPAH--------HLFVLLGPVDPSQNAIPDVLCVIQVCL----------------EGRIS 577 (1011)
T ss_pred HHHHhccCCchhhh--hhccCccc--------ceEEEecCcCcccCCCCcceEEEEEee----------------cceec
Confidence 34455555444433 34444433 457777999998889999999998776 23688
Q ss_pred HhhHHHhcccCCCCCCCeEEeeccccccccccCCC
Q 008209 241 KASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQ 275 (574)
Q Consensus 241 ~~~~~QR~GRaGR~~~G~~~rl~t~~~~~~~l~~~ 275 (574)
+.+..+-.+|.-|.+....=..++++.....++..
T Consensus 578 r~si~~sL~~G~~a~GdlIpW~vseQf~D~~F~~l 612 (1011)
T KOG2036|consen 578 RQSIENSLRRGKRAAGDLIPWTVSEQFQDEDFPKL 612 (1011)
T ss_pred HHHHHHHHhccccccCCccceehhhhhcccchhcc
Confidence 88888877776666522222344544443344443
No 234
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.08 E-value=27 Score=39.35 Aligned_cols=48 Identities=35% Similarity=0.627 Sum_probs=29.0
Q ss_pred HHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCC-CccEEEE
Q 008209 19 LLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRP-DLKLVVM 69 (574)
Q Consensus 19 Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~-~~klvlm 69 (574)
++..+...|...+++++||||+|. +..+..=.++ +.+...+ ..++|+.
T Consensus 112 li~~~~~~p~~g~~KV~IIDEvh~--Ls~~a~NaLL-KtLEEPP~~~~fIL~ 160 (618)
T PRK14951 112 LLEQAVYKPVQGRFKVFMIDEVHM--LTNTAFNAML-KTLEEPPEYLKFVLA 160 (618)
T ss_pred HHHHHHhCcccCCceEEEEEChhh--CCHHHHHHHH-HhcccCCCCeEEEEE
Confidence 334444567778899999999995 4554443334 4444443 3455553
No 235
>PRK13766 Hef nuclease; Provisional
Probab=53.74 E-value=45 Score=38.85 Aligned_cols=75 Identities=16% Similarity=0.358 Sum_probs=53.1
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccc--
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNI-- 201 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~i-- 201 (574)
.+++.+||.+|+...++...+.+.+.+. .....+..++|+.+..++..++.. ..|+++|.-
T Consensus 56 ~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~-----~~~~~v~~~~g~~~~~~r~~~~~~------------~~iiv~T~~~l 118 (773)
T PRK13766 56 KKGGKVLILAPTKPLVEQHAEFFRKFLN-----IPEEKIVVFTGEVSPEKRAELWEK------------AKVIVATPQVI 118 (773)
T ss_pred hCCCeEEEEeCcHHHHHHHHHHHHHHhC-----CCCceEEEEeCCCCHHHHHHHHhC------------CCEEEECHHHH
Confidence 4678999999999999888888876432 123568889999998887766642 368998852
Q ss_pred ----ccccccCCCeEEEE
Q 008209 202 ----AETSLTIDGIVYVI 215 (574)
Q Consensus 202 ----ae~gitip~v~~VI 215 (574)
...-+.+.++++||
T Consensus 119 ~~~l~~~~~~~~~~~liV 136 (773)
T PRK13766 119 ENDLIAGRISLEDVSLLI 136 (773)
T ss_pred HHHHHcCCCChhhCcEEE
Confidence 12234556666655
No 236
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.58 E-value=24 Score=41.22 Aligned_cols=47 Identities=32% Similarity=0.525 Sum_probs=29.2
Q ss_pred CCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhC-CCccEEEEccCCCHHH
Q 008209 26 DPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR-PDLKLVVMSATLEAEK 77 (574)
Q Consensus 26 ~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~-~~~klvlmSATl~~~~ 77 (574)
.|.-.++.++||||+|. +..+..=++||. +... +.+++|+. |-+...
T Consensus 114 ~P~~gk~KViIIDEAh~--LT~eAqNALLKt-LEEPP~~vrFILa--TTe~~k 161 (944)
T PRK14949 114 RPSRGRFKVYLIDEVHM--LSRSSFNALLKT-LEEPPEHVKFLLA--TTDPQK 161 (944)
T ss_pred hhhcCCcEEEEEechHh--cCHHHHHHHHHH-HhccCCCeEEEEE--CCCchh
Confidence 45557899999999996 555555555554 4433 34566654 555443
No 237
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.29 E-value=21 Score=38.76 Aligned_cols=51 Identities=31% Similarity=0.486 Sum_probs=30.8
Q ss_pred HHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHH
Q 008209 22 EAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAE 76 (574)
Q Consensus 22 ~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~ 76 (574)
.+...|.-.++.++||||||- +..+..=++||.+ .. |...+++.-||-+.+
T Consensus 112 ~l~~~p~~g~~KV~IIDEah~--Ls~~A~NALLKtL-EE-Pp~~viFILaTte~~ 162 (484)
T PRK14956 112 NVKFAPMGGKYKVYIIDEVHM--LTDQSFNALLKTL-EE-PPAHIVFILATTEFH 162 (484)
T ss_pred HHHhhhhcCCCEEEEEechhh--cCHHHHHHHHHHh-hc-CCCceEEEeecCChh
Confidence 344445556899999999994 5566655555544 33 334555555554433
No 238
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=52.48 E-value=19 Score=37.86 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=31.9
Q ss_pred HHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCC
Q 008209 22 EAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL 73 (574)
Q Consensus 22 ~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl 73 (574)
.+...+...++.+|||||+|. ++.+..-+++|.+-.-.++..+|++|...
T Consensus 132 ~~~~~~~~~~~kVviIDead~--m~~~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 132 FFGLTAAEGGWRVVIVDTADE--MNANAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred HhCcCcccCCCEEEEEechHh--cCHHHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 334445678899999999995 66666666666553333345566655543
No 239
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=52.23 E-value=27 Score=36.67 Aligned_cols=46 Identities=26% Similarity=0.439 Sum_probs=25.8
Q ss_pred HHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEE
Q 008209 22 EAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVM 69 (574)
Q Consensus 22 ~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlm 69 (574)
.+...|...++.++||||+|. +..+..=+++|.+-.-.+..++|+.
T Consensus 110 ~~~~~p~~~~~kviIIDEa~~--l~~~a~naLLk~lEe~~~~~~fIl~ 155 (363)
T PRK14961 110 NIYYSPSKSRFKVYLIDEVHM--LSRHSFNALLKTLEEPPQHIKFILA 155 (363)
T ss_pred HHhcCcccCCceEEEEEChhh--cCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 334456677899999999995 3333332334433222334455554
No 240
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=52.22 E-value=1.1e+02 Score=27.38 Aligned_cols=60 Identities=20% Similarity=0.280 Sum_probs=43.5
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHH-HHhhhcCCCCCCCCCCCCCCcEEEEecc
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPA-MQQKIFEPAPPPSKEGGPPGRKIVVSTN 200 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~-~q~~v~~~~~~g~~~~~~~~~kvivaT~ 200 (574)
..+.+++.+|+++-++...+.+.+.... ....+..+|++.+.. ++...+ .+. ..|+|+|.
T Consensus 43 ~~~~~lii~P~~~l~~q~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~----~~~-------~~ilv~T~ 103 (169)
T PF00270_consen 43 KDARVLIIVPTRALAEQQFERLRKFFSN-----TNVRVVLLHGGQSISEDQREVL----SNQ-------ADILVTTP 103 (169)
T ss_dssp SSSEEEEEESSHHHHHHHHHHHHHHTTT-----TTSSEEEESTTSCHHHHHHHHH----HTT-------SSEEEEEH
T ss_pred CCceEEEEeecccccccccccccccccc-----cccccccccccccccccccccc----ccc-------ccccccCc
Confidence 4569999999999999999998775432 456788889998855 333333 222 57888885
No 241
>PRK14974 cell division protein FtsY; Provisional
Probab=51.94 E-value=34 Score=35.53 Aligned_cols=44 Identities=27% Similarity=0.420 Sum_probs=32.6
Q ss_pred CCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCC
Q 008209 30 ERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLE 74 (574)
Q Consensus 30 ~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~ 74 (574)
.++++||||.++ |...-.-++.-|+.+.+ ..|+..++++|||..
T Consensus 221 ~~~DvVLIDTaG-r~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g 265 (336)
T PRK14974 221 RGIDVVLIDTAG-RMHTDANLMDELKKIVRVTKPDLVIFVGDALAG 265 (336)
T ss_pred CCCCEEEEECCC-ccCCcHHHHHHHHHHHHhhCCceEEEeeccccc
Confidence 468999999998 55544455666666654 567888999999984
No 242
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.48 E-value=24 Score=38.55 Aligned_cols=46 Identities=28% Similarity=0.560 Sum_probs=27.3
Q ss_pred HHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhC-CCccEEEE
Q 008209 21 REAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR-PDLKLVVM 69 (574)
Q Consensus 21 ~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~-~~~klvlm 69 (574)
.....-|...++.++||||+|. +..+..=+++|. +... +..++|+.
T Consensus 106 e~~~~~P~~~~~KVvIIDEah~--Ls~~A~NaLLK~-LEePp~~v~fIla 152 (491)
T PRK14964 106 ENSCYLPISSKFKVYIIDEVHM--LSNSAFNALLKT-LEEPAPHVKFILA 152 (491)
T ss_pred HHHHhccccCCceEEEEeChHh--CCHHHHHHHHHH-HhCCCCCeEEEEE
Confidence 3344567788999999999995 444433334443 4433 34445543
No 243
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.31 E-value=25 Score=38.80 Aligned_cols=42 Identities=31% Similarity=0.517 Sum_probs=26.5
Q ss_pred cCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhC-CCccEEEE
Q 008209 25 TDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR-PDLKLVVM 69 (574)
Q Consensus 25 ~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~-~~~klvlm 69 (574)
..|.-.+++++||||+|. +..+..=+++| .+... +..++|+.
T Consensus 113 ~~p~~~~~kV~iIDE~~~--ls~~a~naLLk-~LEepp~~~~fIla 155 (509)
T PRK14958 113 YAPTKGRFKVYLIDEVHM--LSGHSFNALLK-TLEEPPSHVKFILA 155 (509)
T ss_pred hccccCCcEEEEEEChHh--cCHHHHHHHHH-HHhccCCCeEEEEE
Confidence 346667899999999995 44555444444 44444 34555553
No 244
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=51.02 E-value=45 Score=38.10 Aligned_cols=69 Identities=19% Similarity=0.237 Sum_probs=43.1
Q ss_pred hcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccc
Q 008209 122 MCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNI 201 (574)
Q Consensus 122 ~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~i 201 (574)
.....|+-||.||+. .++.-.+.+++. .+.+.|.++||+. .||..+=.....++ ....|||+|=-
T Consensus 444 q~g~~gpHLVVvPsS-TleNWlrEf~kw-------CPsl~Ve~YyGSq--~ER~~lR~~i~~~~-----~~ydVllTTY~ 508 (941)
T KOG0389|consen 444 QIGNPGPHLVVVPSS-TLENWLREFAKW-------CPSLKVEPYYGSQ--DERRELRERIKKNK-----DDYDVLLTTYN 508 (941)
T ss_pred HcCCCCCcEEEecch-hHHHHHHHHHHh-------CCceEEEeccCcH--HHHHHHHHHHhccC-----CCccEEEEEee
Confidence 335689999999984 344333444332 5789999999985 56655533333322 13789998844
Q ss_pred cccc
Q 008209 202 AETS 205 (574)
Q Consensus 202 ae~g 205 (574)
+++|
T Consensus 509 la~~ 512 (941)
T KOG0389|consen 509 LAAS 512 (941)
T ss_pred cccC
Confidence 4433
No 245
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.75 E-value=28 Score=38.59 Aligned_cols=49 Identities=31% Similarity=0.531 Sum_probs=29.0
Q ss_pred HHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhC-CCccEEEEc
Q 008209 19 LLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR-PDLKLVVMS 70 (574)
Q Consensus 19 Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~-~~~klvlmS 70 (574)
++..+...|...++.++||||+|. +..+..=+++|. +... +...+|+.+
T Consensus 107 l~~~~~~~p~~~~~kVvIIDEad~--ls~~a~naLLK~-LEepp~~~~fIL~t 156 (527)
T PRK14969 107 LLDNAQYAPTRGRFKVYIIDEVHM--LSKSAFNAMLKT-LEEPPEHVKFILAT 156 (527)
T ss_pred HHHHHhhCcccCCceEEEEcCccc--CCHHHHHHHHHH-HhCCCCCEEEEEEe
Confidence 334445567778999999999995 333333334443 3333 355555543
No 246
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=50.49 E-value=22 Score=40.21 Aligned_cols=50 Identities=30% Similarity=0.519 Sum_probs=30.1
Q ss_pred HHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCC-CccEEEEccCCCHH
Q 008209 22 EAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRP-DLKLVVMSATLEAE 76 (574)
Q Consensus 22 ~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~-~~klvlmSATl~~~ 76 (574)
.+...|.-.++.++||||+|. +..+..=++|| .+...+ ..++|+. |-+.+
T Consensus 110 ~~~~~p~~g~~KV~IIDEah~--Ls~~a~NALLK-tLEEPp~~v~FIL~--Tt~~~ 160 (647)
T PRK07994 110 NVQYAPARGRFKVYLIDEVHM--LSRHSFNALLK-TLEEPPEHVKFLLA--TTDPQ 160 (647)
T ss_pred HHHhhhhcCCCEEEEEechHh--CCHHHHHHHHH-HHHcCCCCeEEEEe--cCCcc
Confidence 333445667899999999995 55555555555 444443 3445543 54443
No 247
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=50.34 E-value=17 Score=41.71 Aligned_cols=34 Identities=21% Similarity=0.188 Sum_probs=27.4
Q ss_pred CCCeEEEchHHHHHHHh--cCCCCCC--ccEEEEecCC
Q 008209 8 LLGGRYLTDGMLLREAM--TDPLLER--YKVIVLDEAH 41 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~--~~~~L~~--~~~vIiDE~H 41 (574)
..+|+|+-.-.|+..+. .++.|.. ++++||||+|
T Consensus 219 ~AdivVtNH~LLladl~~~~~~iLp~~~~~~lViDEAH 256 (697)
T PRK11747 219 EADVVVANHDLVLADLELGGGVVLPDPENLLYVLDEGH 256 (697)
T ss_pred hCCEEEECcHHHHhhhhccCCcccCCCCCCEEEEECcc
Confidence 47899988899998885 3456764 8899999999
No 248
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=50.15 E-value=37 Score=39.75 Aligned_cols=113 Identities=18% Similarity=0.196 Sum_probs=77.7
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhh---cCCCCCCCCCCCCCCcEEEEecc
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKI---FEPAPPPSKEGGPPGRKIVVSTN 200 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v---~~~~~~g~~~~~~~~~kvivaT~ 200 (574)
..++.||.|+.=..-..-+...|.- ..+..+-+-|....++|-.. |+.+.... ...+++|-
T Consensus 724 atgHRVLlF~qMTrlmdimEdyL~~---------~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~y-------f~Fllstr 787 (1157)
T KOG0386|consen 724 ATGHRVLLFSQMTRLMDILEDYLQI---------REYKYLRLDGQTKVEERGDLLEIFNAPDSPY-------FIFLLSTR 787 (1157)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHhh---------hhhheeeecCCcchhhHHHHHHHhcCCCCce-------eeeeeeec
Confidence 3578899998665555545555542 56778888888888877554 55444444 99999999
Q ss_pred cccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC---CCeEEeecccccccc
Q 008209 201 IAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ---PGKCFRLYTEKSFNN 270 (574)
Q Consensus 201 iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~---~G~~~rl~t~~~~~~ 270 (574)
....|++.--.+.|| .||++.. | -...|+.-||-|.| .-.++|+.+-..+++
T Consensus 788 agglglNlQtadtvi--------ifdsdwn-------p---~~d~qaqdrahrigq~~evRv~rl~tv~sveE 842 (1157)
T KOG0386|consen 788 AGGLGLNLQTADTVI--------IFDSDWN-------P---HQDLQAQDRAHRIGQKKEVRVLRLITVNSVEE 842 (1157)
T ss_pred ccccccchhhcceEE--------EecCCCC-------c---hhHHHHHHHHHHhhchhheeeeeeehhhHHHH
Confidence 999999999888887 4554432 2 23455555555554 578899988877754
No 249
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=48.80 E-value=53 Score=35.65 Aligned_cols=75 Identities=13% Similarity=0.256 Sum_probs=58.9
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc---
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN--- 200 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~--- 200 (574)
..+|.+|.-.||+-=+..-++.+.+.+. .+.-.++.|.|..++++|...+.. .||++||+
T Consensus 56 ~~~~kvlfLAPTKPLV~Qh~~~~~~v~~-----ip~~~i~~ltGev~p~~R~~~w~~------------~kVfvaTPQvv 118 (542)
T COG1111 56 WFGGKVLFLAPTKPLVLQHAEFCRKVTG-----IPEDEIAALTGEVRPEEREELWAK------------KKVFVATPQVV 118 (542)
T ss_pred hcCCeEEEecCCchHHHHHHHHHHHHhC-----CChhheeeecCCCChHHHHHHHhh------------CCEEEeccHHH
Confidence 3456899999999888888888876432 355678999999999999988763 68999995
Q ss_pred ---cccccccCCCeEEEE
Q 008209 201 ---IAETSLTIDGIVYVI 215 (574)
Q Consensus 201 ---iae~gitip~v~~VI 215 (574)
+.+==+|+.++.++|
T Consensus 119 eNDl~~Grid~~dv~~li 136 (542)
T COG1111 119 ENDLKAGRIDLDDVSLLI 136 (542)
T ss_pred HhHHhcCccChHHceEEE
Confidence 444557888888888
No 250
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.97 E-value=27 Score=39.54 Aligned_cols=42 Identities=33% Similarity=0.519 Sum_probs=25.6
Q ss_pred cCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhC-CCccEEEE
Q 008209 25 TDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR-PDLKLVVM 69 (574)
Q Consensus 25 ~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~-~~~klvlm 69 (574)
..|...+++++||||+|. +..+..-+++| .+... +...+|+.
T Consensus 112 y~P~~gk~KV~IIDEVh~--LS~~A~NALLK-tLEEPP~~v~FILa 154 (702)
T PRK14960 112 YAPTQGRFKVYLIDEVHM--LSTHSFNALLK-TLEEPPEHVKFLFA 154 (702)
T ss_pred hhhhcCCcEEEEEechHh--cCHHHHHHHHH-HHhcCCCCcEEEEE
Confidence 345567899999999994 44444434444 44443 34555553
No 251
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=47.55 E-value=38 Score=39.64 Aligned_cols=43 Identities=28% Similarity=0.541 Sum_probs=26.1
Q ss_pred hcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhC-CCccEEEE
Q 008209 24 MTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR-PDLKLVVM 69 (574)
Q Consensus 24 ~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~-~~~klvlm 69 (574)
...|...+++++||||+|. +..+..=.+| +++... ..+.+|+.
T Consensus 113 ~~~p~~~~~KV~IIDEad~--lt~~a~NaLL-K~LEEpP~~~~fIl~ 156 (824)
T PRK07764 113 FFAPAESRYKIFIIDEAHM--VTPQGFNALL-KIVEEPPEHLKFIFA 156 (824)
T ss_pred HhchhcCCceEEEEechhh--cCHHHHHHHH-HHHhCCCCCeEEEEE
Confidence 3456678999999999996 4444433333 344443 34455554
No 252
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=47.29 E-value=33 Score=37.71 Aligned_cols=36 Identities=31% Similarity=0.523 Sum_probs=23.4
Q ss_pred HHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHH
Q 008209 19 LLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKE 56 (574)
Q Consensus 19 Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~ 56 (574)
++......|...++.+|||||+|. +..+..-++++.
T Consensus 116 iie~a~~~P~~~~~KVvIIDEa~~--Ls~~a~naLLk~ 151 (507)
T PRK06645 116 IIESAEYKPLQGKHKIFIIDEVHM--LSKGAFNALLKT 151 (507)
T ss_pred HHHHHHhccccCCcEEEEEEChhh--cCHHHHHHHHHH
Confidence 334445567888999999999995 334443344433
No 253
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=47.17 E-value=24 Score=38.61 Aligned_cols=64 Identities=19% Similarity=0.309 Sum_probs=38.7
Q ss_pred CCeEEEchHHHHHHHhcCCC-C--CCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEE-EccCCC
Q 008209 9 LGGRYLTDGMLLREAMTDPL-L--ERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVV-MSATLE 74 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~l~~~~~-L--~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvl-mSATl~ 74 (574)
..|.+-.+|-.++-+.+++. + .+.+++|+||+|+- ..+-+...++..+..+++.++++ .+|..+
T Consensus 98 ~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~--~~~~~~~~l~~g~~~r~~pl~~~ISTag~~ 165 (477)
T PF03354_consen 98 KEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAH--KDDELYDALESGMGARPNPLIIIISTAGDD 165 (477)
T ss_pred eEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCC--CCHHHHHHHHhhhccCCCceEEEEeCCCCC
Confidence 34444444544554544442 2 25789999999973 33446777777777676666554 555543
No 254
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=46.10 E-value=25 Score=39.66 Aligned_cols=49 Identities=16% Similarity=0.371 Sum_probs=35.2
Q ss_pred CccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhhC
Q 008209 31 RYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFY 83 (574)
Q Consensus 31 ~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f~ 83 (574)
+++.+||||+++ +..+.+-.++--+.. .+.++|.+|-|-..+.-..|+.
T Consensus 352 tfDLLIVDEAqF--Ik~~al~~ilp~l~~--~n~k~I~ISS~Ns~~~sTSFL~ 400 (738)
T PHA03368 352 DFNLLFVDEANF--IRPDAVQTIMGFLNQ--TNCKIIFVSSTNTGKASTSFLY 400 (738)
T ss_pred cccEEEEechhh--CCHHHHHHHHHHHhc--cCccEEEEecCCCCccchHHHH
Confidence 799999999997 555666666533322 3899999999986655555553
No 255
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=45.98 E-value=75 Score=26.00 Aligned_cols=61 Identities=15% Similarity=0.252 Sum_probs=39.0
Q ss_pred EchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhh
Q 008209 14 LTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYF 82 (574)
Q Consensus 14 ~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f 82 (574)
.+..-+++.+...+ ++++|+| .+--+.+. +.+++.+....++.++|++|++-+.....+.+
T Consensus 30 ~~~~~~~~~~~~~~----~d~iiid-~~~~~~~~---~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~ 90 (112)
T PF00072_consen 30 SSGEEALELLKKHP----PDLIIID-LELPDGDG---LELLEQIRQINPSIPIIVVTDEDDSDEVQEAL 90 (112)
T ss_dssp SSHHHHHHHHHHST----ESEEEEE-SSSSSSBH---HHHHHHHHHHTTTSEEEEEESSTSHHHHHHHH
T ss_pred CCHHHHHHHhcccC----ceEEEEE-eeeccccc---cccccccccccccccEEEecCCCCHHHHHHHH
Confidence 33455566665543 8899999 33222333 34455554556899999999998877666655
No 256
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=45.87 E-value=23 Score=36.00 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=26.6
Q ss_pred CccEEEEecCCC----CCcchHHHHHHHHHHHhhCCCccEEEEccCC
Q 008209 31 RYKVIVLDEAHE----RTLATDVLFGLLKEVLKNRPDLKLVVMSATL 73 (574)
Q Consensus 31 ~~~~vIiDE~He----R~~~~d~ll~~lk~~~~~~~~~klvlmSATl 73 (574)
++.++||||+|. +....-..+..+|.+... -++-+|+. .|.
T Consensus 145 ~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~Ne-L~ipiV~v-Gt~ 189 (302)
T PF05621_consen 145 GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNE-LQIPIVGV-GTR 189 (302)
T ss_pred CCcEEEeechHHHhcccHHHHHHHHHHHHHHhhc-cCCCeEEe-ccH
Confidence 688999999992 233344567778876442 25666765 353
No 257
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=45.54 E-value=40 Score=37.33 Aligned_cols=42 Identities=29% Similarity=0.618 Sum_probs=27.0
Q ss_pred CCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhC-CCccEEEEc
Q 008209 26 DPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR-PDLKLVVMS 70 (574)
Q Consensus 26 ~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~-~~~klvlmS 70 (574)
.|...++.++||||+|. +..+..=+++| .+... +..++|+.+
T Consensus 112 ~P~~~~~KVvIIDEad~--Lt~~A~NALLK-~LEEpp~~t~FIL~t 154 (535)
T PRK08451 112 KPSMARFKIFIIDEVHM--LTKEAFNALLK-TLEEPPSYVKFILAT 154 (535)
T ss_pred CcccCCeEEEEEECccc--CCHHHHHHHHH-HHhhcCCceEEEEEE
Confidence 46778999999999996 45555444444 44443 345555544
No 258
>PRK09401 reverse gyrase; Reviewed
Probab=45.24 E-value=61 Score=39.64 Aligned_cols=66 Identities=17% Similarity=0.153 Sum_probs=46.0
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 200 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ 200 (574)
.++++||.+||++=+.++++.+.+..... .....++..|++++..++....+....+. ..|+|+|+
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~---~~~~~~~~g~~~~~~~ek~~~~~~l~~~~-------~~IlV~Tp 187 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKV---GCGVKILYYHSSLKKKEKEEFLERLKEGD-------FDILVTTS 187 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhc---CceEEEEEccCCcchhHHHHHHHHHhcCC-------CCEEEECH
Confidence 47889999999999999999988744321 12234455667776666665555555554 68999994
No 259
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.40 E-value=36 Score=38.15 Aligned_cols=46 Identities=30% Similarity=0.547 Sum_probs=27.3
Q ss_pred HHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCC-CccEEE
Q 008209 20 LREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRP-DLKLVV 68 (574)
Q Consensus 20 l~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~-~~klvl 68 (574)
...+...|...++.++||||+|. +..+..=+++ +.+...+ ...+|+
T Consensus 108 ~~~~~~~p~~~~~KVvIIdev~~--Lt~~a~naLL-k~LEepp~~~~fIl 154 (576)
T PRK14965 108 RENVKYLPSRSRYKIFIIDEVHM--LSTNAFNALL-KTLEEPPPHVKFIF 154 (576)
T ss_pred HHHHHhccccCCceEEEEEChhh--CCHHHHHHHH-HHHHcCCCCeEEEE
Confidence 33444457788999999999995 4444333333 3444443 444554
No 260
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=44.39 E-value=36 Score=38.34 Aligned_cols=49 Identities=33% Similarity=0.603 Sum_probs=29.6
Q ss_pred HHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhC-CCccEEEEc
Q 008209 19 LLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR-PDLKLVVMS 70 (574)
Q Consensus 19 Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~-~~~klvlmS 70 (574)
++..+..-|...++++|||||+|. +..+..=+++| .+... +...+|+.+
T Consensus 120 Iie~~~~~P~~a~~KVvIIDEad~--Ls~~a~naLLK-tLEePp~~~~fIl~t 169 (598)
T PRK09111 120 IIESVRYRPVSARYKVYIIDEVHM--LSTAAFNALLK-TLEEPPPHVKFIFAT 169 (598)
T ss_pred HHHHHHhchhcCCcEEEEEEChHh--CCHHHHHHHHH-HHHhCCCCeEEEEEe
Confidence 444455567888999999999996 33333333333 34433 456666643
No 261
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.05 E-value=40 Score=37.84 Aligned_cols=44 Identities=32% Similarity=0.600 Sum_probs=26.9
Q ss_pred HHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCC-CccEEE
Q 008209 22 EAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRP-DLKLVV 68 (574)
Q Consensus 22 ~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~-~~klvl 68 (574)
.+...|...++.++||||+|. +..+..=+++| .+...+ .+.+|+
T Consensus 109 ~~~~~P~~~~~KVvIIDEah~--Lt~~A~NALLK-~LEEpp~~~~fIL 153 (584)
T PRK14952 109 RAFYAPAQSRYRIFIVDEAHM--VTTAGFNALLK-IVEEPPEHLIFIF 153 (584)
T ss_pred HHHhhhhcCCceEEEEECCCc--CCHHHHHHHHH-HHhcCCCCeEEEE
Confidence 334457778999999999995 44554444444 444433 444444
No 262
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.97 E-value=50 Score=37.34 Aligned_cols=49 Identities=20% Similarity=0.509 Sum_probs=29.9
Q ss_pred HHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccC
Q 008209 21 REAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSAT 72 (574)
Q Consensus 21 ~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSAT 72 (574)
..+...|...++.+|||||+|. +..+.. ..|.+.+...|+--++++.+|
T Consensus 111 ~~~~~~P~~~~~KVvIIdea~~--Ls~~a~-naLLK~LEepp~~tifIL~tt 159 (614)
T PRK14971 111 EQVRIPPQIGKYKIYIIDEVHM--LSQAAF-NAFLKTLEEPPSYAIFILATT 159 (614)
T ss_pred HHHhhCcccCCcEEEEEECccc--CCHHHH-HHHHHHHhCCCCCeEEEEEeC
Confidence 3345568899999999999996 333333 333444555544444555455
No 263
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=43.85 E-value=16 Score=36.46 Aligned_cols=33 Identities=15% Similarity=0.191 Sum_probs=24.4
Q ss_pred CCeEEEchHHHHHHHhcC-----C---CCCCccEEEEecCC
Q 008209 9 LGGRYLTDGMLLREAMTD-----P---LLERYKVIVLDEAH 41 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~l~~~-----~---~L~~~~~vIiDE~H 41 (574)
.+|+|+|.+-+.--.+.| + ...++.++||||||
T Consensus 167 ~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvD 207 (266)
T PF07517_consen 167 ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVD 207 (266)
T ss_dssp SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHH
T ss_pred CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccc
Confidence 689999998775533222 1 25789999999998
No 264
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=43.84 E-value=51 Score=31.25 Aligned_cols=47 Identities=32% Similarity=0.495 Sum_probs=35.2
Q ss_pred CCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCCHHH
Q 008209 30 ERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLEAEK 77 (574)
Q Consensus 30 ~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~~~~ 77 (574)
+++++|+||-+. |+....-++..++.+.. ..+.--+++||||...+.
T Consensus 82 ~~~D~vlIDT~G-r~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~ 129 (196)
T PF00448_consen 82 KGYDLVLIDTAG-RSPRDEELLEELKKLLEALNPDEVHLVLSATMGQED 129 (196)
T ss_dssp TTSSEEEEEE-S-SSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHH
T ss_pred cCCCEEEEecCC-cchhhHHHHHHHHHHhhhcCCccceEEEecccChHH
Confidence 468999999998 77777777777777766 346667888999995443
No 265
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=43.72 E-value=1.1e+02 Score=29.33 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=33.1
Q ss_pred CCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcc-hHHHHHHHHHHHhhCCCccEEEEccCCC
Q 008209 8 LLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLA-TDVLFGLLKEVLKNRPDLKLVVMSATLE 74 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~-~d~ll~~lk~~~~~~~~~klvlmSATl~ 74 (574)
+..++|.+..-+...+ ....+.++|||||+|.-+.. .+.++.++..... ....+++++++..
T Consensus 70 ~~~~~~i~~~~~~~~~---~~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~--~~~~~vl~~~~~~ 132 (227)
T PRK08903 70 GRNARYLDAASPLLAF---DFDPEAELYAVDDVERLDDAQQIALFNLFNRVRA--HGQGALLVAGPAA 132 (227)
T ss_pred CCcEEEEehHHhHHHH---hhcccCCEEEEeChhhcCchHHHHHHHHHHHHHH--cCCcEEEEeCCCC
Confidence 3456666665544332 34557889999999953222 2233444433222 1233567777653
No 266
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=43.33 E-value=15 Score=42.89 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=26.4
Q ss_pred CCCeEEEchHHH-HHHHhcC----C---CCCCccEEEEecCC
Q 008209 8 LLGGRYLTDGML-LREAMTD----P---LLERYKVIVLDEAH 41 (574)
Q Consensus 8 ~~~I~~~T~g~L-l~~l~~~----~---~L~~~~~vIiDE~H 41 (574)
..+|+|+|+|.| ++.|..+ + ....+.++|||||+
T Consensus 171 ~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvD 212 (908)
T PRK13107 171 NADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVD 212 (908)
T ss_pred CCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchh
Confidence 479999999999 6655433 1 23788999999999
No 267
>PHA00149 DNA encapsidation protein
Probab=43.33 E-value=41 Score=33.79 Aligned_cols=58 Identities=19% Similarity=0.337 Sum_probs=44.1
Q ss_pred CCCCCCccEEEEecCCC-CCc------chHHHHHHHHHHHhhCCCccEEEEccCC-CHHHHHhhhC
Q 008209 26 DPLLERYKVIVLDEAHE-RTL------ATDVLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQGYFY 83 (574)
Q Consensus 26 ~~~L~~~~~vIiDE~He-R~~------~~d~ll~~lk~~~~~~~~~klvlmSATl-~~~~~~~~f~ 83 (574)
.+...+|++|++||+-- ++- +.+.++.+.-.+.+.|.++|++++|--. ..+.+-.||+
T Consensus 106 s~~Yp~V~~I~fDEfi~dk~n~~YlpNE~~allnli~tV~R~Re~vr~~~lsNa~~~~NPyF~yfg 171 (331)
T PHA00149 106 SSAYPNVSTIFFDEFIREKDNKRYLPNEVDALLNLIDTVFRARERVRCICLSNAVSIVNPYFLYFG 171 (331)
T ss_pred ccCCCceEEEEeeeeeecCcccccCCchHHHHHHHHHHHHHhhcCeEEEEEcCcccccchhhheec
Confidence 45688999999999982 322 3567888888888888999999999775 3566666664
No 268
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.03 E-value=11 Score=43.39 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=25.4
Q ss_pred CCCeEEEchHHHHHHHhcC---CCCCCccEEEEecCC
Q 008209 8 LLGGRYLTDGMLLREAMTD---PLLERYKVIVLDEAH 41 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~---~~L~~~~~vIiDE~H 41 (574)
..+|+++..-+|++--... -.+.+ .+|||||||
T Consensus 195 ~advIi~pYnyl~dp~~r~~~~~~l~~-~ivI~DEAH 230 (705)
T TIGR00604 195 FANIVLLPYQYLLDPKIRSAVSIELKD-SIVIFDEAH 230 (705)
T ss_pred cCCEEEechHHhcCHHHHHHhhccccc-CEEEEECcc
Confidence 6899999999997654332 23545 899999999
No 269
>PRK06893 DNA replication initiation factor; Validated
Probab=43.02 E-value=35 Score=33.17 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=30.1
Q ss_pred CCCCccEEEEecCCCCCcc---hHHHHHHHHHHHhhCCCccEEEEccCCCHHHH
Q 008209 28 LLERYKVIVLDEAHERTLA---TDVLFGLLKEVLKNRPDLKLVVMSATLEAEKF 78 (574)
Q Consensus 28 ~L~~~~~vIiDE~HeR~~~---~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~ 78 (574)
.+.+++++||||+|.-..+ ...++.++..... .+.++|++|++..+..+
T Consensus 88 ~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~--~~~~illits~~~p~~l 139 (229)
T PRK06893 88 NLEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKE--QGKTLLLISADCSPHAL 139 (229)
T ss_pred hcccCCEEEEeChhhhcCChHHHHHHHHHHHHHHH--cCCcEEEEeCCCChHHc
Confidence 3668899999999942222 2245555554432 23457788888755443
No 270
>PTZ00424 helicase 45; Provisional
Probab=42.43 E-value=2.2e+02 Score=29.94 Aligned_cols=75 Identities=12% Similarity=0.041 Sum_probs=47.7
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccc--
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIA-- 202 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ia-- 202 (574)
.+..+|+++|+++=+.++.+.+..... .....+..+.|+....++...+. .+ ..|+|+|+=.
T Consensus 95 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~---~~--------~~Ivv~Tp~~l~ 158 (401)
T PTZ00424 95 NACQALILAPTRELAQQIQKVVLALGD-----YLKVRCHACVGGTVVRDDINKLK---AG--------VHMVVGTPGRVY 158 (401)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHhh-----hcCceEEEEECCcCHHHHHHHHc---CC--------CCEEEECcHHHH
Confidence 466899999999877777666654321 23456777788876655433322 22 4799999621
Q ss_pred ----cccccCCCeEEEE
Q 008209 203 ----ETSLTIDGIVYVI 215 (574)
Q Consensus 203 ----e~gitip~v~~VI 215 (574)
...+.+.++.+||
T Consensus 159 ~~l~~~~~~l~~i~lvV 175 (401)
T PTZ00424 159 DMIDKRHLRVDDLKLFI 175 (401)
T ss_pred HHHHhCCcccccccEEE
Confidence 2245677777766
No 271
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.94 E-value=41 Score=35.78 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=17.9
Q ss_pred HHHhcCCCCCCccEEEEecCCC
Q 008209 21 REAMTDPLLERYKVIVLDEAHE 42 (574)
Q Consensus 21 ~~l~~~~~L~~~~~vIiDE~He 42 (574)
..+...|...++.+|||||+|.
T Consensus 117 ~~~~~~p~~~~~kvvIIdea~~ 138 (397)
T PRK14955 117 ENVRYGPQKGRYRVYIIDEVHM 138 (397)
T ss_pred HHHhhchhcCCeEEEEEeChhh
Confidence 3445568889999999999996
No 272
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=41.37 E-value=47 Score=34.36 Aligned_cols=37 Identities=32% Similarity=0.535 Sum_probs=24.4
Q ss_pred HHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHH
Q 008209 19 LLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEV 57 (574)
Q Consensus 19 Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~ 57 (574)
++..+...|...+..+|||||+|. +..+..-.+++.+
T Consensus 105 l~~~~~~~p~~~~~~vviidea~~--l~~~~~~~Ll~~l 141 (355)
T TIGR02397 105 ILDNVKYAPSSGKYKVYIIDEVHM--LSKSAFNALLKTL 141 (355)
T ss_pred HHHHHhcCcccCCceEEEEeChhh--cCHHHHHHHHHHH
Confidence 455555678889999999999995 3333333444443
No 273
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.06 E-value=41 Score=36.65 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=47.5
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 200 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ 200 (574)
.++.+||..|+++=+....+.|.. .++.+..++|+.+..++..++.....+. .+|+++|+
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~---------~gi~~~~l~~~~~~~~~~~i~~~~~~~~-------~~il~~TP 109 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKA---------SGIPATFLNSSQSKEQQKNVLTDLKDGK-------IKLLYVTP 109 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHH---------cCCcEEEEeCCCCHHHHHHHHHHHhcCC-------CCEEEECH
Confidence 367899999999888777777754 3566788999999998888877776665 78998886
No 274
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=41.05 E-value=46 Score=37.16 Aligned_cols=39 Identities=33% Similarity=0.480 Sum_probs=25.5
Q ss_pred HHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhC
Q 008209 20 LREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR 61 (574)
Q Consensus 20 l~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~ 61 (574)
...+..-|...++.++||||+|. +..+..=+++|. +...
T Consensus 108 ~~~v~~~p~~~~~kViIIDE~~~--Lt~~a~naLLKt-LEep 146 (559)
T PRK05563 108 RDKVKYAPSEAKYKVYIIDEVHM--LSTGAFNALLKT-LEEP 146 (559)
T ss_pred HHHHhhCcccCCeEEEEEECccc--CCHHHHHHHHHH-hcCC
Confidence 34444457788999999999995 455554455553 3443
No 275
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=40.31 E-value=69 Score=34.66 Aligned_cols=65 Identities=11% Similarity=0.184 Sum_probs=37.6
Q ss_pred CCCeEEEchHHHHHHHhc---CC-------CCCCccEEEEecCCCC---CcchHHHHHHHHHHHhhCCCccEEEEccCCC
Q 008209 8 LLGGRYLTDGMLLREAMT---DP-------LLERYKVIVLDEAHER---TLATDVLFGLLKEVLKNRPDLKLVVMSATLE 74 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~---~~-------~L~~~~~vIiDE~HeR---~~~~d~ll~~lk~~~~~~~~~klvlmSATl~ 74 (574)
+..++|+|..-+.+++.. .. .+.++++++|||+|-- ....+.++.++..+... + +.|+++++..
T Consensus 169 ~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~--~-k~IIlts~~~ 245 (445)
T PRK12422 169 GGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTE--G-KLIVISSTCA 245 (445)
T ss_pred CCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHC--C-CcEEEecCCC
Confidence 567889998776655421 11 2678999999999932 12234445555443322 3 3455555543
Q ss_pred H
Q 008209 75 A 75 (574)
Q Consensus 75 ~ 75 (574)
+
T Consensus 246 p 246 (445)
T PRK12422 246 P 246 (445)
T ss_pred H
Confidence 3
No 276
>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins.
Probab=39.91 E-value=3.3e+02 Score=27.56 Aligned_cols=30 Identities=17% Similarity=0.077 Sum_probs=25.9
Q ss_pred CcChhhhhhccCCCCHHHHHHHHhccCCCC
Q 008209 332 NLTEMGEKMSEFPLDPQMSKMLVESPKYNC 361 (574)
Q Consensus 332 ~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c 361 (574)
..|++|+.++.+++++..++.+..+..-++
T Consensus 3 ~~T~~Grias~yYI~~~T~~~f~~~l~~~~ 32 (312)
T smart00611 3 WPTDLGRIASYYYISYTTIRTFNELLKPKM 32 (312)
T ss_pred ccchhHHHHhhhccChHHHHHHHHhcCCCC
Confidence 469999999999999999999988765444
No 277
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=39.77 E-value=36 Score=35.55 Aligned_cols=85 Identities=19% Similarity=0.165 Sum_probs=57.4
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhhcC-CCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccc---
Q 008209 126 SGDILVFLTGEEEIEDACRKITKEITNMG-DQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNI--- 201 (574)
Q Consensus 126 ~g~iLVFl~~~~ei~~~~~~L~~~~~~~~-~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~i--- 201 (574)
+.--||.||+++-+......+......+. ...+.+..+-.-|+++..+|..+.+.- ..|+|||+=
T Consensus 246 GP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~G-----------vHivVATPGRL~ 314 (610)
T KOG0341|consen 246 GPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRG-----------VHIVVATPGRLM 314 (610)
T ss_pred CCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcC-----------eeEEEcCcchHH
Confidence 44579999999988888877776554432 224556667778999999998886543 689999962
Q ss_pred --c---------cccccCCCeEEEEcCCccc
Q 008209 202 --A---------ETSLTIDGIVYVIDPGFAK 221 (574)
Q Consensus 202 --a---------e~gitip~v~~VID~g~~k 221 (574)
+ =+-++++..+-.||-||..
T Consensus 315 DmL~KK~~sLd~CRyL~lDEADRmiDmGFEd 345 (610)
T KOG0341|consen 315 DMLAKKIMSLDACRYLTLDEADRMIDMGFED 345 (610)
T ss_pred HHHHHhhccHHHHHHhhhhhHHHHhhccchh
Confidence 1 1234455555566666643
No 278
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=39.70 E-value=88 Score=34.57 Aligned_cols=75 Identities=11% Similarity=0.038 Sum_probs=48.9
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc----
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN---- 200 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~---- 200 (574)
.+..+||.+|+++=+..+.+.+..... ..++.+..+.|+.+..+|...+. .+ ..|||+|+
T Consensus 195 ~~~~aLIL~PTreLa~Qi~~~~~~l~~-----~~~~~~~~~~gG~~~~~q~~~l~---~~--------~~IiV~TPgrL~ 258 (518)
T PLN00206 195 RNPLAMVLTPTRELCVQVEDQAKVLGK-----GLPFKTALVVGGDAMPQQLYRIQ---QG--------VELIVGTPGRLI 258 (518)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhC-----CCCceEEEEECCcchHHHHHHhc---CC--------CCEEEECHHHHH
Confidence 356799999999887776666554221 13466777788777666543332 22 47999994
Q ss_pred -ccc-ccccCCCeEEEE
Q 008209 201 -IAE-TSLTIDGIVYVI 215 (574)
Q Consensus 201 -iae-~gitip~v~~VI 215 (574)
.+. ..+.+.++.+||
T Consensus 259 ~~l~~~~~~l~~v~~lV 275 (518)
T PLN00206 259 DLLSKHDIELDNVSVLV 275 (518)
T ss_pred HHHHcCCccchheeEEE
Confidence 433 367788888766
No 279
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.56 E-value=55 Score=36.04 Aligned_cols=33 Identities=36% Similarity=0.523 Sum_probs=22.1
Q ss_pred HhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHH
Q 008209 23 AMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEV 57 (574)
Q Consensus 23 l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~ 57 (574)
+...|...++.+|||||+|. +..+.+-.+++.+
T Consensus 108 ~~~~p~~~~~kVVIIDEad~--ls~~a~naLLk~L 140 (504)
T PRK14963 108 VLLAPLRGGRKVYILDEAHM--MSKSAFNALLKTL 140 (504)
T ss_pred HhhccccCCCeEEEEECccc--cCHHHHHHHHHHH
Confidence 34457788999999999994 3444444444443
No 280
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=39.32 E-value=42 Score=36.36 Aligned_cols=63 Identities=16% Similarity=0.319 Sum_probs=39.1
Q ss_pred cCCCeEEEchHHHHHHHhc---C--C-------CCCCccEEEEecCCCCC---cchHHHHHHHHHHHhhCCCccEEEEcc
Q 008209 7 VLLGGRYLTDGMLLREAMT---D--P-------LLERYKVIVLDEAHERT---LATDVLFGLLKEVLKNRPDLKLVVMSA 71 (574)
Q Consensus 7 ~~~~I~~~T~g~Ll~~l~~---~--~-------~L~~~~~vIiDE~HeR~---~~~d~ll~~lk~~~~~~~~~klvlmSA 71 (574)
++..++|+|..-+++.+.. + . .+.+++++||||+|--. -..+.++.++....... -++|+.|-
T Consensus 170 ~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~--k~iIltsd 247 (450)
T PRK14087 170 SDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIEND--KQLFFSSD 247 (450)
T ss_pred CCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcC--CcEEEECC
Confidence 4567899999888877642 1 1 25678999999999422 22355666666554432 24544443
No 281
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=39.15 E-value=70 Score=34.04 Aligned_cols=51 Identities=24% Similarity=0.432 Sum_probs=31.6
Q ss_pred HHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccC
Q 008209 19 LLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSAT 72 (574)
Q Consensus 19 Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSAT 72 (574)
+.+.+...|...++.++||||+|. ++....-+++| .+...++-.++++.||
T Consensus 105 l~~~~~~~p~~~~~kViiIDead~--m~~~aanaLLk-~LEep~~~~~fIL~a~ 155 (394)
T PRK07940 105 LVTIAARRPSTGRWRIVVIEDADR--LTERAANALLK-AVEEPPPRTVWLLCAP 155 (394)
T ss_pred HHHHHHhCcccCCcEEEEEechhh--cCHHHHHHHHH-HhhcCCCCCeEEEEEC
Confidence 344444567778999999999995 44444434444 3455555555666555
No 282
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.55 E-value=52 Score=36.03 Aligned_cols=35 Identities=37% Similarity=0.581 Sum_probs=22.8
Q ss_pred HHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHH
Q 008209 19 LLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLK 55 (574)
Q Consensus 19 Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk 55 (574)
+.+.+..-|...++.++||||+|. +..+..=++++
T Consensus 107 I~~~~~~~P~~~~~KVvIIDEad~--Lt~~a~naLLk 141 (486)
T PRK14953 107 LRDAVSYTPIKGKYKVYIIDEAHM--LTKEAFNALLK 141 (486)
T ss_pred HHHHHHhCcccCCeeEEEEEChhh--cCHHHHHHHHH
Confidence 344445567888999999999995 44444333333
No 283
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=38.43 E-value=1.1e+02 Score=36.78 Aligned_cols=114 Identities=18% Similarity=0.236 Sum_probs=80.1
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc-cc
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN-IA 202 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~-ia 202 (574)
.++.+|.|.+||-==++.=++.+.+++.. -+++|-.+-.-.+..||..+++...+|+ ..|||-|- ++
T Consensus 641 ~~GKQVAvLVPTTlLA~QHy~tFkeRF~~-----fPV~I~~LSRF~s~kE~~~il~~la~G~-------vDIvIGTHrLL 708 (1139)
T COG1197 641 MDGKQVAVLVPTTLLAQQHYETFKERFAG-----FPVRIEVLSRFRSAKEQKEILKGLAEGK-------VDIVIGTHRLL 708 (1139)
T ss_pred cCCCeEEEEcccHHhHHHHHHHHHHHhcC-----CCeeEEEecccCCHHHHHHHHHHHhcCC-------ccEEEechHhh
Confidence 36789999999987777777777776653 4688888888889999999999999999 99999986 56
Q ss_pred cccccCCCeEEEE-c----CCc---ccceeecCCCCcceeeeeeccHhhHHHhcc
Q 008209 203 ETSLTIDGIVYVI-D----PGF---AKQKVYNPRVRVESLLVSPISKASAHQRSG 249 (574)
Q Consensus 203 e~gitip~v~~VI-D----~g~---~k~~~y~~~~~~~~l~~~~is~~~~~QR~G 249 (574)
..+|...|.-.|| | +|. .+.+.--....+-+|.-+||.+.-.+=+.|
T Consensus 709 ~kdv~FkdLGLlIIDEEqRFGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~G 763 (1139)
T COG1197 709 SKDVKFKDLGLLIIDEEQRFGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSG 763 (1139)
T ss_pred CCCcEEecCCeEEEechhhcCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhc
Confidence 6788888887655 3 221 011112223333444555666555555554
No 284
>PF15586 Imm47: Immunity protein 47
Probab=38.35 E-value=70 Score=27.63 Aligned_cols=47 Identities=11% Similarity=0.136 Sum_probs=37.0
Q ss_pred CCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhh
Q 008209 9 LGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKN 60 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~ 60 (574)
-++.+|||.-|-+.......+-+-.++|++|.. .+.+...+.+++..
T Consensus 45 F~v~VcTP~wL~~~~~~~~~~~gr~~LIv~~yd-----~~~I~~~i~~~i~~ 91 (116)
T PF15586_consen 45 FQVFVCTPKWLSKNCWKPGILWGRHMLIVEEYD-----YDEIKKTIERIIES 91 (116)
T ss_pred EEEEEEcHHHHHHhhcCCcceeccceEEEecCC-----HHHHHHHHHHHHHH
Confidence 468999999999887766667778899999975 46677777776664
No 285
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.18 E-value=49 Score=36.79 Aligned_cols=48 Identities=31% Similarity=0.515 Sum_probs=29.1
Q ss_pred HHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCC-CccEEEE
Q 008209 19 LLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRP-DLKLVVM 69 (574)
Q Consensus 19 Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~-~~klvlm 69 (574)
++..+..-|...++.++||||+|. +..+..=.++ +.+...| ...+|+.
T Consensus 107 ii~~~~~~p~~g~~kViIIDEa~~--ls~~a~naLL-K~LEepp~~v~fIL~ 155 (546)
T PRK14957 107 ILDNIQYMPSQGRYKVYLIDEVHM--LSKQSFNALL-KTLEEPPEYVKFILA 155 (546)
T ss_pred HHHHHHhhhhcCCcEEEEEechhh--ccHHHHHHHH-HHHhcCCCCceEEEE
Confidence 445555567778999999999996 4443333333 4444443 4445543
No 286
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=37.59 E-value=1e+02 Score=31.30 Aligned_cols=43 Identities=19% Similarity=0.225 Sum_probs=25.5
Q ss_pred CCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhC-CCccEEEEc
Q 008209 26 DPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR-PDLKLVVMS 70 (574)
Q Consensus 26 ~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~-~~~klvlmS 70 (574)
.+...+.++|||||+|. +...-....++.++... .+.++|+.+
T Consensus 95 ~~~~~~~~vliiDe~d~--l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 95 VSLTGGGKVIIIDEFDR--LGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred hcccCCCeEEEEECccc--ccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 34456789999999994 21222344556655543 355565544
No 287
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.57 E-value=47 Score=37.42 Aligned_cols=32 Identities=41% Similarity=0.613 Sum_probs=20.8
Q ss_pred HHhcCCCCCCccEEEEecCCCCCcchHHHHHHHH
Q 008209 22 EAMTDPLLERYKVIVLDEAHERTLATDVLFGLLK 55 (574)
Q Consensus 22 ~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk 55 (574)
.+...|...++.+|||||+|. +..+..-.+++
T Consensus 110 ~~~~~p~~g~~kVIIIDEad~--Lt~~a~naLLk 141 (624)
T PRK14959 110 AIGYAPMEGRYKVFIIDEAHM--LTREAFNALLK 141 (624)
T ss_pred HHHhhhhcCCceEEEEEChHh--CCHHHHHHHHH
Confidence 333446678899999999995 44444433443
No 288
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=37.05 E-value=1e+02 Score=30.91 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=33.9
Q ss_pred CCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCCH---HHHHhhhC
Q 008209 30 ERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLEA---EKFQGYFY 83 (574)
Q Consensus 30 ~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~~---~~~~~~f~ 83 (574)
.++++||||-+= |+..-+-.+..++.++. ..|+..++.+|||... ..+.+.|.
T Consensus 153 ~~~D~ViIDt~G-r~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~ 209 (270)
T PRK06731 153 ARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFK 209 (270)
T ss_pred CCCCEEEEECCC-CCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhC
Confidence 478999999997 45444444555555544 4456668889999854 34444454
No 289
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=36.77 E-value=33 Score=33.12 Aligned_cols=65 Identities=17% Similarity=0.238 Sum_probs=42.1
Q ss_pred cCCCeEEEchHHHHHHHhc----CC------CCCCccEEEEecCCCCCc---chHHHHHHHHHHHhhCCCccEEEEccCC
Q 008209 7 VLLGGRYLTDGMLLREAMT----DP------LLERYKVIVLDEAHERTL---ATDVLFGLLKEVLKNRPDLKLVVMSATL 73 (574)
Q Consensus 7 ~~~~I~~~T~g~Ll~~l~~----~~------~L~~~~~vIiDE~HeR~~---~~d~ll~~lk~~~~~~~~~klvlmSATl 73 (574)
++..|+|.|..-+.+.+.. +. .+.++++++||.+|.=.- ..+.++.++..+... +-++|+.|...
T Consensus 63 ~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~--~k~li~ts~~~ 140 (219)
T PF00308_consen 63 PGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIES--GKQLILTSDRP 140 (219)
T ss_dssp TTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT--TSEEEEEESS-
T ss_pred ccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhh--CCeEEEEeCCC
Confidence 4678999998877766532 21 367999999999994221 235666666665544 45777777554
No 290
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=36.65 E-value=57 Score=36.67 Aligned_cols=60 Identities=20% Similarity=0.113 Sum_probs=47.8
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 200 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ 200 (574)
.+|.++|..|...-+....+.|.. .++.+..+||+++..++..++.....|. .++++.|+
T Consensus 52 ~~g~~lVisPl~sL~~dq~~~l~~---------~gi~~~~~~s~~~~~~~~~~~~~l~~~~-------~~il~~tp 111 (591)
T TIGR01389 52 LKGLTVVISPLISLMKDQVDQLRA---------AGVAAAYLNSTLSAKEQQDIEKALVNGE-------LKLLYVAP 111 (591)
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHH---------cCCcEEEEeCCCCHHHHHHHHHHHhCCC-------CCEEEECh
Confidence 367899999999888877777765 3467889999999999888877776666 78888775
No 291
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=36.30 E-value=65 Score=33.10 Aligned_cols=51 Identities=24% Similarity=0.351 Sum_probs=32.6
Q ss_pred HHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccC
Q 008209 19 LLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSAT 72 (574)
Q Consensus 19 Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSAT 72 (574)
+.+.+...|...++.+||||++|. ++....=++|| .+...|+..+|+.+..
T Consensus 112 i~~~l~~~p~~~~~kVvII~~ae~--m~~~aaNaLLK-~LEEPp~~~fILi~~~ 162 (314)
T PRK07399 112 IKRFLSRPPLEAPRKVVVIEDAET--MNEAAANALLK-TLEEPGNGTLILIAPS 162 (314)
T ss_pred HHHHHccCcccCCceEEEEEchhh--cCHHHHHHHHH-HHhCCCCCeEEEEECC
Confidence 344455667889999999999996 44444334444 4455666656665543
No 292
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=36.01 E-value=36 Score=37.33 Aligned_cols=53 Identities=30% Similarity=0.446 Sum_probs=33.4
Q ss_pred HHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHH
Q 008209 20 LREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAE 76 (574)
Q Consensus 20 l~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~ 76 (574)
......-|.-.+|.+.||||+|- +.....=++||.+-. |...++..=||-+.+
T Consensus 108 ~e~v~y~P~~~ryKVyiIDEvHM--LS~~afNALLKTLEE--PP~hV~FIlATTe~~ 160 (515)
T COG2812 108 IEKVNYAPSEGRYKVYIIDEVHM--LSKQAFNALLKTLEE--PPSHVKFILATTEPQ 160 (515)
T ss_pred HHHhccCCccccceEEEEecHHh--hhHHHHHHHhccccc--CccCeEEEEecCCcC
Confidence 33344457788999999999994 566666666665432 333444444665543
No 293
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.00 E-value=58 Score=36.63 Aligned_cols=47 Identities=34% Similarity=0.584 Sum_probs=26.9
Q ss_pred HHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEcc
Q 008209 22 EAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSA 71 (574)
Q Consensus 22 ~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSA 71 (574)
.+...|...++.+|||||+|. +..+..=.+++. +...++--++++.+
T Consensus 111 ~~~~~p~~~~~kVvIIDEa~~--L~~~a~naLLk~-LEepp~~tv~Il~t 157 (585)
T PRK14950 111 RVQFRPALARYKVYIIDEVHM--LSTAAFNALLKT-LEEPPPHAIFILAT 157 (585)
T ss_pred HHhhCcccCCeEEEEEeChHh--CCHHHHHHHHHH-HhcCCCCeEEEEEe
Confidence 344557788999999999995 444443333333 44433333333333
No 294
>PF05894 Podovirus_Gp16: Podovirus DNA encapsidation protein (Gp16); InterPro: IPR008784 This family consists of several DNA encapsidation protein (Gp16) sequences from the phi-29-like viruses. Gene product 16 catalyses the in vivo and in vitro genome-encapsidation reaction [].; GO: 0005524 ATP binding, 0019069 viral capsid assembly
Probab=35.49 E-value=60 Score=33.09 Aligned_cols=48 Identities=19% Similarity=0.349 Sum_probs=37.3
Q ss_pred cCCCCCCccEEEEecCC-CCCc------chHHHHHHHHHHHhhCCCccEEEEccC
Q 008209 25 TDPLLERYKVIVLDEAH-ERTL------ATDVLFGLLKEVLKNRPDLKLVVMSAT 72 (574)
Q Consensus 25 ~~~~L~~~~~vIiDE~H-eR~~------~~d~ll~~lk~~~~~~~~~klvlmSAT 72 (574)
..+...+|.+||+||+- |++- ..+.++.++-.+-+.+++++++++|--
T Consensus 106 Ks~~Yp~V~~IvfDEfi~ek~~~~y~~nEv~~Lln~i~TV~R~rd~i~vicl~Na 160 (333)
T PF05894_consen 106 KSSSYPNVYTIVFDEFIIEKSNWRYIPNEVKALLNFIDTVFRFRDRIRVICLSNA 160 (333)
T ss_pred ccCCCCcEEEEEEEEEEecCcccCCCchHHHHHHHHHHHHhhcccceEEEEEecc
Confidence 34568899999999998 5554 245677777777778899999999974
No 295
>PRK08116 hypothetical protein; Validated
Probab=34.76 E-value=1.2e+02 Score=30.39 Aligned_cols=71 Identities=18% Similarity=0.226 Sum_probs=41.1
Q ss_pred CCCeEEEchHHHHHHHhcC-------C------CCCCccEEEEecCC-CCCcchHHHHHHHHHHHhhC--CCccEEEEcc
Q 008209 8 LLGGRYLTDGMLLREAMTD-------P------LLERYKVIVLDEAH-ERTLATDVLFGLLKEVLKNR--PDLKLVVMSA 71 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~-------~------~L~~~~~vIiDE~H-eR~~~~d~ll~~lk~~~~~~--~~~klvlmSA 71 (574)
+..++|+|..-|++.+... . .+.+++++||||++ ++. +|.....+-.++..+ ....+|+.|-
T Consensus 142 ~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~--t~~~~~~l~~iin~r~~~~~~~IiTsN 219 (268)
T PRK08116 142 GVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERD--TEWAREKVYNIIDSRYRKGLPTIVTTN 219 (268)
T ss_pred CCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCC--CHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 4567888888888877421 0 26789999999998 322 333333333333322 3445555554
Q ss_pred CCCHHHHHhh
Q 008209 72 TLEAEKFQGY 81 (574)
Q Consensus 72 Tl~~~~~~~~ 81 (574)
+..+.+...
T Consensus 220 -~~~~eL~~~ 228 (268)
T PRK08116 220 -LSLEELKNQ 228 (268)
T ss_pred -CCHHHHHHH
Confidence 455555443
No 296
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=34.74 E-value=1.2e+02 Score=35.65 Aligned_cols=64 Identities=11% Similarity=0.139 Sum_probs=43.7
Q ss_pred CCCCEEEEc-CCHHHHHHHHHHHHHHHhhc------------------CCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCC
Q 008209 125 PSGDILVFL-TGEEEIEDACRKITKEITNM------------------GDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPS 185 (574)
Q Consensus 125 ~~g~iLVFl-~~~~ei~~~~~~L~~~~~~~------------------~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~ 185 (574)
...+.|||+ |+++-+..+++.+.+....+ ..+..++.+..++||.+.+.|..... .+
T Consensus 60 ~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~---~~- 135 (844)
T TIGR02621 60 KVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDP---HR- 135 (844)
T ss_pred cccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcC---CC-
Confidence 345678866 99988887777776644332 11234688999999999877755443 22
Q ss_pred CCCCCCCcEEEEec
Q 008209 186 KEGGPPGRKIVVST 199 (574)
Q Consensus 186 ~~~~~~~~kvivaT 199 (574)
..|||+|
T Consensus 136 -------p~IIVgT 142 (844)
T TIGR02621 136 -------PAVIVGT 142 (844)
T ss_pred -------CcEEEEC
Confidence 4799999
No 297
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.70 E-value=55 Score=35.73 Aligned_cols=19 Identities=37% Similarity=0.628 Sum_probs=15.6
Q ss_pred hcCCCCCCccEEEEecCCC
Q 008209 24 MTDPLLERYKVIVLDEAHE 42 (574)
Q Consensus 24 ~~~~~L~~~~~vIiDE~He 42 (574)
...|...++.+|||||+|.
T Consensus 110 ~~~p~~~~~kVvIIDE~h~ 128 (472)
T PRK14962 110 GYRPMEGKYKVYIIDEVHM 128 (472)
T ss_pred hhChhcCCeEEEEEEChHH
Confidence 3456778899999999995
No 298
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=34.69 E-value=1e+02 Score=28.30 Aligned_cols=46 Identities=28% Similarity=0.413 Sum_probs=29.9
Q ss_pred CCCccEEEEecCC----CCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHH
Q 008209 29 LERYKVIVLDEAH----ERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEK 77 (574)
Q Consensus 29 L~~~~~vIiDE~H----eR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~ 77 (574)
...|++||+||+= ---+..|-++.+++. ++++.-+|+++-....+.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~---rp~~~evIlTGr~~p~~l 142 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKA---KPEDLELVLTGRNAPKEL 142 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHc---CCCCCEEEEECCCCCHHH
Confidence 3589999999986 223445555555543 445667888777765443
No 299
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=34.59 E-value=35 Score=38.93 Aligned_cols=36 Identities=39% Similarity=0.577 Sum_probs=0.0
Q ss_pred cEEEEecCC-----------CCCcchHHHHHHHHHHHhhCCCccEEEEccC
Q 008209 33 KVIVLDEAH-----------ERTLATDVLFGLLKEVLKNRPDLKLVVMSAT 72 (574)
Q Consensus 33 ~~vIiDE~H-----------eR~~~~d~ll~~lk~~~~~~~~~klvlmSAT 72 (574)
++||+||+| .-+-..-..|.+-+.+ |+.|+|.-|||
T Consensus 407 GvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~L----P~ARVVYASAT 453 (1300)
T KOG1513|consen 407 GVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKL----PNARVVYASAT 453 (1300)
T ss_pred eeEEehhhhhhcccccccCCCcCcccHhHHHHHHhC----CCceEEEeecc
No 300
>PRK13767 ATP-dependent helicase; Provisional
Probab=34.40 E-value=2.6e+02 Score=33.17 Aligned_cols=64 Identities=16% Similarity=0.183 Sum_probs=46.4
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHh-------hcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEe
Q 008209 126 SGDILVFLTGEEEIEDACRKITKEIT-------NMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVS 198 (574)
Q Consensus 126 ~g~iLVFl~~~~ei~~~~~~L~~~~~-------~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kviva 198 (574)
+..+|+.+|+++=+....+.|.+.+. ..+...+.+.+...||+.+..++.+.+... ..|+|+
T Consensus 84 ~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~-----------p~IlVt 152 (876)
T PRK13767 84 KVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKP-----------PHILIT 152 (876)
T ss_pred CeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCC-----------CCEEEe
Confidence 44699999999988887776654222 122333477899999999999887766543 479999
Q ss_pred cc
Q 008209 199 TN 200 (574)
Q Consensus 199 T~ 200 (574)
|+
T Consensus 153 TP 154 (876)
T PRK13767 153 TP 154 (876)
T ss_pred cH
Confidence 97
No 301
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=34.36 E-value=39 Score=40.35 Aligned_cols=61 Identities=21% Similarity=0.157 Sum_probs=39.6
Q ss_pred CCCeEEEchHHHHHHHhcC-CC-C-CCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCC
Q 008209 8 LLGGRYLTDGMLLREAMTD-PL-L-ERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL 73 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~-~~-L-~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl 73 (574)
...|+|+|=--+-.....+ +. + .+==+||+|||| |+...+.. ..++.. .++...++++.|+
T Consensus 350 ~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaH-RSQ~G~~~-~~~~~~---~~~a~~~gFTGTP 413 (962)
T COG0610 350 KGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAH-RSQYGELA-KLLKKA---LKKAIFIGFTGTP 413 (962)
T ss_pred CCcEEEEEecccchhhhcccccccCCCcEEEEEechh-hccccHHH-HHHHHH---hccceEEEeeCCc
Confidence 3578888866665555443 11 2 223378999999 78777554 344443 3458899999998
No 302
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=34.15 E-value=16 Score=34.87 Aligned_cols=44 Identities=18% Similarity=0.279 Sum_probs=23.6
Q ss_pred CCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHH
Q 008209 8 LLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGL 53 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~ 53 (574)
..+|++||.-...+....+ .-..+++||||||=. ....++++.+
T Consensus 170 ~~~vi~~T~~~~~~~~~~~-~~~~~d~vIvDEAsq-~~e~~~l~~l 213 (236)
T PF13086_consen 170 EADVIFTTLSSAASPFLSN-FKEKFDVVIVDEASQ-ITEPEALIPL 213 (236)
T ss_dssp T-SEEEEETCGGG-CCGTT------SEEEETTGGG-S-HHHHHHHH
T ss_pred cccccccccccchhhHhhh-hcccCCEEEEeCCCC-cchHHHHHHH
Confidence 4679999987663322221 122899999999974 3345554443
No 303
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=34.14 E-value=1.3e+02 Score=32.25 Aligned_cols=69 Identities=16% Similarity=0.171 Sum_probs=41.2
Q ss_pred EchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCCH---HHHHhhhC
Q 008209 14 LTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLEA---EKFQGYFY 83 (574)
Q Consensus 14 ~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~~---~~~~~~f~ 83 (574)
.++.-+.+.+..-..-.++++|+||-+= |+....-.+.-++.++. ..|+-.++.+|||... ..+.+.|.
T Consensus 303 ~d~~~L~~aL~~lk~~~~~DvVLIDTaG-Rs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~ 375 (436)
T PRK11889 303 RDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFK 375 (436)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCcc-ccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhc
Confidence 3555555444321112368999999997 55555555666666654 4455567779999843 34445554
No 304
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=33.87 E-value=65 Score=36.59 Aligned_cols=51 Identities=16% Similarity=0.241 Sum_probs=37.7
Q ss_pred CCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhhCC
Q 008209 30 ERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYG 84 (574)
Q Consensus 30 ~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f~~ 84 (574)
.+++++|+||++. +..+++-+++--+.. .+.++|++|-+-+.+.+..++.+
T Consensus 293 ~~~DLLIVDEAAf--I~~~~l~aIlP~l~~--~~~k~IiISS~~~~~s~tS~L~n 343 (752)
T PHA03333 293 QNPDLVIVDEAAF--VNPGALLSVLPLMAV--KGTKQIHISSPVDADSWISRVGE 343 (752)
T ss_pred CCCCEEEEECccc--CCHHHHHHHHHHHcc--CCCceEEEeCCCCcchHHHHhhh
Confidence 3579999999996 555666665444332 37899999999988888877754
No 305
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=33.84 E-value=67 Score=33.71 Aligned_cols=50 Identities=20% Similarity=0.279 Sum_probs=34.2
Q ss_pred CCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHH
Q 008209 28 LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKF 78 (574)
Q Consensus 28 ~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~ 78 (574)
...++.++.+||+|--++-.-.+|+.|-..+-. .++-+|.+|-+...+.+
T Consensus 124 l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~-~gvvlVaTSN~~P~~Ly 173 (362)
T PF03969_consen 124 LAKESRLLCFDEFQVTDIADAMILKRLFEALFK-RGVVLVATSNRPPEDLY 173 (362)
T ss_pred HHhcCCEEEEeeeeccchhHHHHHHHHHHHHHH-CCCEEEecCCCChHHHc
Confidence 356788999999997666655666644333322 37889999999754444
No 306
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=33.81 E-value=31 Score=39.81 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=26.3
Q ss_pred CCCeEEEchHHHHHHHhcCC---CCCCccEEEEecCC
Q 008209 8 LLGGRYLTDGMLLREAMTDP---LLERYKVIVLDEAH 41 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~---~L~~~~~vIiDE~H 41 (574)
..+|+||-..+|++-..+.. .| +=++||+||||
T Consensus 222 dAdIIF~PYnYLiDp~iR~~~~v~L-knsIVIfDEAH 257 (945)
T KOG1132|consen 222 DADIIFCPYNYLIDPKIRRSHKVDL-KNSIVIFDEAH 257 (945)
T ss_pred cCcEEEechhhhcCHhhhccccccc-cccEEEEeccc
Confidence 47899999999998766543 23 44799999999
No 307
>PRK06921 hypothetical protein; Provisional
Probab=33.59 E-value=77 Score=31.66 Aligned_cols=72 Identities=17% Similarity=0.201 Sum_probs=38.4
Q ss_pred CCCeEEEchHHHHHHHhcC--------CCCCCccEEEEecCCC----CCcchHHHHHHHHHHHhhCC-CccEEEEccCCC
Q 008209 8 LLGGRYLTDGMLLREAMTD--------PLLERYKVIVLDEAHE----RTLATDVLFGLLKEVLKNRP-DLKLVVMSATLE 74 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~--------~~L~~~~~vIiDE~He----R~~~~d~ll~~lk~~~~~~~-~~klvlmSATl~ 74 (574)
+..++|+|..-++..+... ..+.++++|||||+|- +...++.-...+-.++..+. .-+-+++|..+.
T Consensus 146 g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~ 225 (266)
T PRK06921 146 GVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELT 225 (266)
T ss_pred CceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 4567888876666665321 1367899999999962 11223333333333333221 112345566665
Q ss_pred HHHHH
Q 008209 75 AEKFQ 79 (574)
Q Consensus 75 ~~~~~ 79 (574)
.+.+.
T Consensus 226 ~~el~ 230 (266)
T PRK06921 226 IDELL 230 (266)
T ss_pred HHHHh
Confidence 55544
No 308
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=33.38 E-value=1.8e+02 Score=33.04 Aligned_cols=65 Identities=12% Similarity=0.052 Sum_probs=48.1
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccccc
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAE 203 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae 203 (574)
..+..++|..|+..=+.+.++.+...... .++.+..+.|+++++++..+.. ..|+++|| .|
T Consensus 142 l~G~~v~VvTptreLA~qdae~~~~l~~~-----lGlsv~~i~gg~~~~~r~~~y~-------------~dIvygT~-~e 202 (656)
T PRK12898 142 LAGLPVHVITVNDYLAERDAELMRPLYEA-----LGLTVGCVVEDQSPDERRAAYG-------------ADITYCTN-KE 202 (656)
T ss_pred hcCCeEEEEcCcHHHHHHHHHHHHHHHhh-----cCCEEEEEeCCCCHHHHHHHcC-------------CCEEEECC-Cc
Confidence 35678999999999888888887764432 4678889999999887766542 57999997 33
Q ss_pred cccc
Q 008209 204 TSLT 207 (574)
Q Consensus 204 ~git 207 (574)
-|.|
T Consensus 203 ~~FD 206 (656)
T PRK12898 203 LVFD 206 (656)
T ss_pred hhhh
Confidence 4433
No 309
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.23 E-value=71 Score=36.20 Aligned_cols=31 Identities=42% Similarity=0.602 Sum_probs=20.2
Q ss_pred hcCCCCCCccEEEEecCCCCCcchHHHHHHHHH
Q 008209 24 MTDPLLERYKVIVLDEAHERTLATDVLFGLLKE 56 (574)
Q Consensus 24 ~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~ 56 (574)
...|...++.+|||||+|. +..+..=+++|.
T Consensus 114 ~~~p~~~~~KViIIDEad~--Lt~~a~naLLK~ 144 (620)
T PRK14948 114 QFAPVQARWKVYVIDECHM--LSTAAFNALLKT 144 (620)
T ss_pred hhChhcCCceEEEEECccc--cCHHHHHHHHHH
Confidence 3456678899999999995 444443334433
No 310
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=33.02 E-value=9.9e+02 Score=29.23 Aligned_cols=41 Identities=32% Similarity=0.400 Sum_probs=30.1
Q ss_pred CCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccC
Q 008209 28 LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSAT 72 (574)
Q Consensus 28 ~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSAT 72 (574)
.|..-++|||||+. ++.+..+..+++.+. ..+.|+|++.=+
T Consensus 465 ~l~~~~vlVIDEAs--Mv~~~~m~~Ll~~~~--~~garvVLVGD~ 505 (1102)
T PRK13826 465 QLDNKTVFVLDEAG--MVASRQMALFVEAVT--RAGAKLVLVGDP 505 (1102)
T ss_pred CCCCCcEEEEECcc--cCCHHHHHHHHHHHH--hcCCEEEEECCH
Confidence 47778999999998 477777777766543 246889888644
No 311
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.69 E-value=91 Score=32.60 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=17.7
Q ss_pred HHHHhcCCCCCCccEEEEecCCC
Q 008209 20 LREAMTDPLLERYKVIVLDEAHE 42 (574)
Q Consensus 20 l~~l~~~~~L~~~~~vIiDE~He 42 (574)
...+...|...+..+|||||+|.
T Consensus 97 ~~~~~~~p~~~~~kiviIDE~~~ 119 (367)
T PRK14970 97 IDQVRIPPQTGKYKIYIIDEVHM 119 (367)
T ss_pred HHHHhhccccCCcEEEEEeChhh
Confidence 34444567888999999999994
No 312
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=32.02 E-value=75 Score=35.53 Aligned_cols=43 Identities=30% Similarity=0.576 Sum_probs=25.6
Q ss_pred hcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEE
Q 008209 24 MTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVM 69 (574)
Q Consensus 24 ~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlm 69 (574)
...|...++.++||||+|. +.....=++++. +...|+.-++++
T Consensus 112 ~~~p~~~~~KVvIIDEa~~--Ls~~a~naLLK~-LEepp~~~vfI~ 154 (563)
T PRK06647 112 MFPPASSRYRVYIIDEVHM--LSNSAFNALLKT-IEEPPPYIVFIF 154 (563)
T ss_pred HhchhcCCCEEEEEEChhh--cCHHHHHHHHHh-hccCCCCEEEEE
Confidence 4567789999999999995 333333333433 444443333334
No 313
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=31.87 E-value=72 Score=36.67 Aligned_cols=51 Identities=27% Similarity=0.534 Sum_probs=29.6
Q ss_pred HHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccC
Q 008209 19 LLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSAT 72 (574)
Q Consensus 19 Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSAT 72 (574)
|...+..-|...++.++||||+|- +..+..-++++. +...|+--++++.+|
T Consensus 106 Lie~~~~~P~~g~~KV~IIDEa~~--LT~~A~NALLKt-LEEPP~~tifILaTt 156 (725)
T PRK07133 106 LIENVKNLPTQSKYKIYIIDEVHM--LSKSAFNALLKT-LEEPPKHVIFILATT 156 (725)
T ss_pred HHHHHHhchhcCCCEEEEEEChhh--CCHHHHHHHHHH-hhcCCCceEEEEEcC
Confidence 334445567889999999999995 444444444443 444443333333333
No 314
>PRK08727 hypothetical protein; Validated
Probab=31.86 E-value=85 Score=30.55 Aligned_cols=63 Identities=14% Similarity=0.095 Sum_probs=33.2
Q ss_pred CCCeEEEchHHHHHHHhcC-CCCCCccEEEEecCCCCCc---chHHHHHHHHHHHhhCCCccEEEEccC
Q 008209 8 LLGGRYLTDGMLLREAMTD-PLLERYKVIVLDEAHERTL---ATDVLFGLLKEVLKNRPDLKLVVMSAT 72 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~-~~L~~~~~vIiDE~HeR~~---~~d~ll~~lk~~~~~~~~~klvlmSAT 72 (574)
+..+.|.|..-+...+..- ..+.++++|||||+|.-.. ..+.++.++..... .+.++|+.|-.
T Consensus 69 ~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~--~~~~vI~ts~~ 135 (233)
T PRK08727 69 GRSSAYLPLQAAAGRLRDALEALEGRSLVALDGLESIAGQREDEVALFDFHNRARA--AGITLLYTARQ 135 (233)
T ss_pred CCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeCcccccCChHHHHHHHHHHHHHHH--cCCeEEEECCC
Confidence 3456777765544433211 1467889999999994322 23344544443322 23445554443
No 315
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=31.81 E-value=1.2e+02 Score=34.72 Aligned_cols=123 Identities=18% Similarity=0.210 Sum_probs=80.3
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhhcCCC-----C----CCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEE
Q 008209 126 SGDILVFLTGEEEIEDACRKITKEITNMGDQ-----V----GPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIV 196 (574)
Q Consensus 126 ~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~-----~----~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvi 196 (574)
+..||||-......+.+.+.|.+.--...+. . .....+-+.|..+..++++.++.|.... .-..-++
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~----~lsWlfl 794 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEP----GLSWLFL 794 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCC----Cceeeee
Confidence 5679999887776666555555421111110 0 1123467788889999999887765432 0114688
Q ss_pred EecccccccccCCCe-EEE-EcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEEeeccccccc
Q 008209 197 VSTNIAETSLTIDGI-VYV-IDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFN 269 (574)
Q Consensus 197 vaT~iae~gitip~v-~~V-ID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl~t~~~~~ 269 (574)
++|-.-..||++=+. ++| +|+.+ .|+--+.+.=|+-|-|-..|..+|||.-....+
T Consensus 795 lstrag~lGinLIsanr~~ifda~w-----------------npchdaqavcRvyrYGQ~KpcfvYRlVmD~~lE 852 (1387)
T KOG1016|consen 795 LSTRAGSLGINLISANRCIIFDACW-----------------NPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLE 852 (1387)
T ss_pred ehhccccccceeeccceEEEEEeec-----------------CccccchhhhhhhhhcCcCceeEEeehhhhhhH
Confidence 889988889876433 333 33332 256667888899999999999999997765554
No 316
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=31.78 E-value=26 Score=39.41 Aligned_cols=71 Identities=17% Similarity=0.125 Sum_probs=43.4
Q ss_pred CCeEEEchHHHHH----HHhc---CCCCC--CccEEEEecCC-CCCcchHHHHHHHHHHHhhCCCccEEEEccCC-----
Q 008209 9 LGGRYLTDGMLLR----EAMT---DPLLE--RYKVIVLDEAH-ERTLATDVLFGLLKEVLKNRPDLKLVVMSATL----- 73 (574)
Q Consensus 9 ~~I~~~T~g~Ll~----~l~~---~~~L~--~~~~vIiDE~H-eR~~~~d~ll~~lk~~~~~~~~~klvlmSATl----- 73 (574)
-+|+++|.....+ ++.. +.-|. ..+-||+|||| -|...+....++++-.. .---++|+|.
T Consensus 432 YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a-----~~RWclTGTPiqNn~ 506 (901)
T KOG4439|consen 432 YDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSA-----KSRWCLTGTPIQNNL 506 (901)
T ss_pred cceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhh-----cceeecccCccccch
Confidence 4688888877766 3221 11232 35679999999 57777777766665422 2234678886
Q ss_pred -CHHHHHhhhCC
Q 008209 74 -EAEKFQGYFYG 84 (574)
Q Consensus 74 -~~~~~~~~f~~ 84 (574)
|.=.+-+|++.
T Consensus 507 ~DvysLlrFLr~ 518 (901)
T KOG4439|consen 507 WDVYSLLRFLRC 518 (901)
T ss_pred hHHHHHHHHhcC
Confidence 33444566653
No 317
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=31.64 E-value=1.1e+02 Score=29.23 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=23.9
Q ss_pred CCCccEEEEecCCCCCcc---hHHHHHHHHHHHhhCCCccEEEEccCCC
Q 008209 29 LERYKVIVLDEAHERTLA---TDVLFGLLKEVLKNRPDLKLVVMSATLE 74 (574)
Q Consensus 29 L~~~~~vIiDE~HeR~~~---~d~ll~~lk~~~~~~~~~klvlmSATl~ 74 (574)
+.+.++|||||+|.-+.. .+.+..++...... +.++| ++++..
T Consensus 88 ~~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~--~~~iI-its~~~ 133 (226)
T TIGR03420 88 LEQADLVCLDDVEAIAGQPEWQEALFHLYNRVREA--GGRLL-IAGRAA 133 (226)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHc--CCeEE-EECCCC
Confidence 566789999999954332 33444444443222 23444 555543
No 318
>PF12846 AAA_10: AAA-like domain
Probab=31.54 E-value=45 Score=33.24 Aligned_cols=49 Identities=29% Similarity=0.363 Sum_probs=26.8
Q ss_pred CCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHH
Q 008209 30 ERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQ 79 (574)
Q Consensus 30 ~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~ 79 (574)
..-.++++||+|. -+........+..+++......+.++-||-++..+.
T Consensus 219 ~~~~~i~iDEa~~-~~~~~~~~~~~~~~~~~~Rk~g~~~~l~tQ~~~~l~ 267 (304)
T PF12846_consen 219 GRPKIIVIDEAHN-FLSNPSGAEFLDELLREGRKYGVGLILATQSPSDLP 267 (304)
T ss_pred CceEEEEeCCccc-cccccchhhhhhHHHHHHHhcCCEEEEeeCCHHHHh
Confidence 4567889999994 222223333444444432245566666666555553
No 319
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=31.25 E-value=44 Score=38.05 Aligned_cols=34 Identities=26% Similarity=0.307 Sum_probs=28.0
Q ss_pred CCCeEEEchHHHHHHHhcCCC---CCCccEEEEecCC
Q 008209 8 LLGGRYLTDGMLLREAMTDPL---LERYKVIVLDEAH 41 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~~---L~~~~~vIiDE~H 41 (574)
..+++|++.-.++........ +.+-+++|+||+|
T Consensus 194 ~ad~vv~nh~~~~~~~~~~~~~~~~p~~~v~v~DEAH 230 (654)
T COG1199 194 NADLVVTNHALLLADVALEESRILLPENDVVVFDEAH 230 (654)
T ss_pred hCCEEEEccHHHHhHHHhhhhhccCCcccEEEEeccc
Confidence 468999999999887765544 4678999999999
No 320
>PRK05642 DNA replication initiation factor; Validated
Probab=30.95 E-value=92 Score=30.36 Aligned_cols=68 Identities=19% Similarity=0.221 Sum_probs=39.1
Q ss_pred CCCeEEEchHHHHHHHhc-CCCCCCccEEEEecCCCC-C--cchHHHHHHHHHHHhhCCCccEEEEccCCCHHHH
Q 008209 8 LLGGRYLTDGMLLREAMT-DPLLERYKVIVLDEAHER-T--LATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKF 78 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~-~~~L~~~~~vIiDE~HeR-~--~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~ 78 (574)
+..++|.|..-+...... -..+.+++++|||++|-- + -..+.++.++..... .-+.+++++|.....+
T Consensus 73 ~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~---~g~~ilits~~~p~~l 144 (234)
T PRK05642 73 GEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVIAGKADWEEALFHLFNRLRD---SGRRLLLAASKSPREL 144 (234)
T ss_pred CCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhhcCChHHHHHHHHHHHHHHh---cCCEEEEeCCCCHHHc
Confidence 467888888776653211 013667899999999921 1 122345555544322 2356777777654433
No 321
>PRK06620 hypothetical protein; Validated
Probab=30.68 E-value=1.4e+02 Score=28.64 Aligned_cols=40 Identities=13% Similarity=0.421 Sum_probs=24.0
Q ss_pred CCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCC
Q 008209 29 LERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL 73 (574)
Q Consensus 29 L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl 73 (574)
+...++++|||+|. .....++.++..+... + +.++++||-
T Consensus 83 ~~~~d~lliDdi~~--~~~~~lf~l~N~~~e~--g-~~ilits~~ 122 (214)
T PRK06620 83 LEKYNAFIIEDIEN--WQEPALLHIFNIINEK--Q-KYLLLTSSD 122 (214)
T ss_pred HhcCCEEEEecccc--chHHHHHHHHHHHHhc--C-CEEEEEcCC
Confidence 34668999999994 3334556665554433 2 345555553
No 322
>COG1485 Predicted ATPase [General function prediction only]
Probab=30.63 E-value=77 Score=32.94 Aligned_cols=50 Identities=22% Similarity=0.353 Sum_probs=34.7
Q ss_pred CCCCccEEEEecCCCCCcchHHHHHHHH-HHHhhCCCccEEEEccCCCHHHHH
Q 008209 28 LLERYKVIVLDEAHERTLATDVLFGLLK-EVLKNRPDLKLVVMSATLEAEKFQ 79 (574)
Q Consensus 28 ~L~~~~~vIiDE~HeR~~~~d~ll~~lk-~~~~~~~~~klvlmSATl~~~~~~ 79 (574)
...++.++.+||+|--++.--.+|+.|- .+.+. ++-+|.+|-|..-+.+.
T Consensus 127 ~~~~~~vLCfDEF~VtDI~DAMiL~rL~~~Lf~~--GV~lvaTSN~~P~~LY~ 177 (367)
T COG1485 127 LAAETRVLCFDEFEVTDIADAMILGRLLEALFAR--GVVLVATSNTAPDNLYK 177 (367)
T ss_pred HHhcCCEEEeeeeeecChHHHHHHHHHHHHHHHC--CcEEEEeCCCChHHhcc
Confidence 3678999999999965554445566543 33333 79999999997544443
No 323
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=30.29 E-value=3.2e+02 Score=22.66 Aligned_cols=61 Identities=21% Similarity=0.231 Sum_probs=41.1
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccc
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNI 201 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~i 201 (574)
...+.++|++|+..-++...+.+...... ...+..+++.....++..... .. ..|+++|.-
T Consensus 28 ~~~~~~lv~~p~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~----~~-------~~i~i~t~~ 88 (144)
T cd00046 28 LKGGQVLVLAPTRELANQVAERLKELFGE------GIKVGYLIGGTSIKQQEKLLS----GK-------TDIVVGTPG 88 (144)
T ss_pred ccCCCEEEEcCcHHHHHHHHHHHHHHhhC------CcEEEEEecCcchhHHHHHhc----CC-------CCEEEECcH
Confidence 45789999999999999988888764321 355667777665554442211 11 578888875
No 324
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=29.87 E-value=2.5e+02 Score=27.55 Aligned_cols=84 Identities=18% Similarity=0.114 Sum_probs=49.9
Q ss_pred CeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeee
Q 008209 159 PVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP 238 (574)
Q Consensus 159 ~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~ 238 (574)
++.|....|+-+.+. ..+..+.. .....|+|.=|.+.+|+|++|..+.- -++ .+
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~---~~~~~I~VGGn~LsRGlTleGL~vsY----------f~R--------~s 163 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGEN---LGLNVIAVGGNKLSRGLTLEGLTVSY----------FLR--------NS 163 (239)
T ss_pred CceEEEEeCCCcccc-----cccccccc---CCceEEEECCccccCceeECCcEEEE----------ecC--------CC
Confidence 478888887755433 12222210 01278999999999999999987655 111 12
Q ss_pred ccHhhHHHhcccCC-CCCCCeEEeecccccc
Q 008209 239 ISKASAHQRSGRAG-RTQPGKCFRLYTEKSF 268 (574)
Q Consensus 239 is~~~~~QR~GRaG-R~~~G~~~rl~t~~~~ 268 (574)
.......||.--=| |.+=....|+|...+.
T Consensus 164 ~~~DTL~QmgRwFGYR~gY~dl~Ri~~~~~l 194 (239)
T PF10593_consen 164 KQYDTLMQMGRWFGYRPGYEDLCRIYMPEEL 194 (239)
T ss_pred chHHHHHHHhhcccCCcccccceEEecCHHH
Confidence 25567777743344 3332456677776544
No 325
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=28.97 E-value=94 Score=27.75 Aligned_cols=78 Identities=18% Similarity=0.161 Sum_probs=44.3
Q ss_pred HHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCe--EEEEcCCcccceeecCCCC-----------ccee--eee
Q 008209 173 MQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGI--VYVIDPGFAKQKVYNPRVR-----------VESL--LVS 237 (574)
Q Consensus 173 ~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v--~~VID~g~~k~~~y~~~~~-----------~~~l--~~~ 237 (574)
+...+++.|.... ..-|+++|.-..-|||+|+- +.||=.|+.-....||... .... ...
T Consensus 35 ~~~~~l~~f~~~~------~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 108 (141)
T smart00492 35 ETGKLLEKYVEAC------ENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSL 108 (141)
T ss_pred HHHHHHHHHHHcC------CCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHH
Confidence 3445555554432 02699999888999999974 5666556533222222100 0001 112
Q ss_pred eccHhhHHHhcccCCCCCC
Q 008209 238 PISKASAHQRSGRAGRTQP 256 (574)
Q Consensus 238 ~is~~~~~QR~GRaGR~~~ 256 (574)
|...-...|-+||+=|...
T Consensus 109 ~~a~~~l~Qa~GR~iR~~~ 127 (141)
T smart00492 109 PDAMRTLAQCVGRLIRGAN 127 (141)
T ss_pred HHHHHHHHHHhCccccCcC
Confidence 3445567899999999875
No 326
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=28.96 E-value=87 Score=32.34 Aligned_cols=46 Identities=15% Similarity=0.232 Sum_probs=27.3
Q ss_pred HHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCC-ccEEE
Q 008209 20 LREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPD-LKLVV 68 (574)
Q Consensus 20 l~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~-~klvl 68 (574)
...+...|...++.++||||+|. ++.+..=+++ +.+...|+ ..+|+
T Consensus 99 ~~~~~~~~~~~~~kvviI~~a~~--~~~~a~NaLL-K~LEEPp~~~~~Il 145 (329)
T PRK08058 99 KEEFSKSGVESNKKVYIIEHADK--MTASAANSLL-KFLEEPSGGTTAIL 145 (329)
T ss_pred HHHHhhCCcccCceEEEeehHhh--hCHHHHHHHH-HHhcCCCCCceEEE
Confidence 33444557788999999999996 3333333333 34444444 44444
No 327
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=28.89 E-value=1.9e+02 Score=30.80 Aligned_cols=76 Identities=14% Similarity=0.145 Sum_probs=55.6
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc---
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN--- 200 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~--- 200 (574)
..+-..|+-.||++-+....+.+.+. . ...++....++|+-+.++|-..+... -.||+||+
T Consensus 88 ~~g~RalilsptreLa~qtlkvvkdl-g----rgt~lr~s~~~ggD~~eeqf~~l~~n-----------pDii~ATpgr~ 151 (529)
T KOG0337|consen 88 QTGLRALILSPTRELALQTLKVVKDL-G----RGTKLRQSLLVGGDSIEEQFILLNEN-----------PDIIIATPGRL 151 (529)
T ss_pred ccccceeeccCcHHHHHHHHHHHHHh-c----cccchhhhhhcccchHHHHHHHhccC-----------CCEEEecCcee
Confidence 34568999999998877777766551 1 12456677788888888886665433 46888886
Q ss_pred ---cccccccCCCeEEEE
Q 008209 201 ---IAETSLTIDGIVYVI 215 (574)
Q Consensus 201 ---iae~gitip~v~~VI 215 (574)
.+|..+++..|.|||
T Consensus 152 ~h~~vem~l~l~sveyVV 169 (529)
T KOG0337|consen 152 LHLGVEMTLTLSSVEYVV 169 (529)
T ss_pred eeeehheeccccceeeee
Confidence 577888999999999
No 328
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=28.70 E-value=81 Score=31.23 Aligned_cols=44 Identities=25% Similarity=0.285 Sum_probs=22.1
Q ss_pred ccEEEEecCCC--CCc----chHHHHHHHHHHHhhCCCccEEEEccCCCH
Q 008209 32 YKVIVLDEAHE--RTL----ATDVLFGLLKEVLKNRPDLKLVVMSATLEA 75 (574)
Q Consensus 32 ~~~vIiDE~He--R~~----~~d~ll~~lk~~~~~~~~~klvlmSATl~~ 75 (574)
-++|+|||+|- ++- ..+.+-.+++.+-..+.++.+|+.+.+-+.
T Consensus 106 ~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~ 155 (261)
T TIGR02881 106 GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEM 155 (261)
T ss_pred CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchh
Confidence 36999999993 211 122333333333223445555655555333
No 329
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=28.60 E-value=33 Score=35.74 Aligned_cols=14 Identities=43% Similarity=0.743 Sum_probs=12.4
Q ss_pred CCCCccEEEEecCC
Q 008209 28 LLERYKVIVLDEAH 41 (574)
Q Consensus 28 ~L~~~~~vIiDE~H 41 (574)
...++++|||||+|
T Consensus 80 ~~~~~DviivDEAq 93 (352)
T PF09848_consen 80 EKNKYDVIIVDEAQ 93 (352)
T ss_pred cCCcCCEEEEehhH
Confidence 45689999999999
No 330
>PRK04296 thymidine kinase; Provisional
Probab=28.59 E-value=1.8e+02 Score=27.29 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=26.9
Q ss_pred hHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEcc
Q 008209 16 DGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSA 71 (574)
Q Consensus 16 ~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSA 71 (574)
..-+++.+.. .-.++++|||||+|- +..+.+..+++.+. ..+..+|+..-
T Consensus 65 ~~~~~~~~~~--~~~~~dvviIDEaq~--l~~~~v~~l~~~l~--~~g~~vi~tgl 114 (190)
T PRK04296 65 DTDIFELIEE--EGEKIDCVLIDEAQF--LDKEQVVQLAEVLD--DLGIPVICYGL 114 (190)
T ss_pred hHHHHHHHHh--hCCCCCEEEEEcccc--CCHHHHHHHHHHHH--HcCCeEEEEec
Confidence 3444444443 234789999999983 33343444444432 23455555433
No 331
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=28.59 E-value=97 Score=32.03 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=30.0
Q ss_pred HHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCC-ccEEEEc
Q 008209 21 REAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPD-LKLVVMS 70 (574)
Q Consensus 21 ~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~-~klvlmS 70 (574)
+.+...|...++.++||||+|. ++.+..=++|| .+...|+ .-+|+.|
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~--m~~~aaNaLLK-~LEEPp~~~~fiL~t 143 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEA--MNRNAANALLK-SLEEPSGDTVLLLIS 143 (328)
T ss_pred HHHhhccccCCCeEEEECChhh--CCHHHHHHHHH-HHhCCCCCeEEEEEE
Confidence 3334457788999999999996 66666656666 4444443 4444333
No 332
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=28.34 E-value=93 Score=32.05 Aligned_cols=48 Identities=23% Similarity=0.275 Sum_probs=32.0
Q ss_pred HHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCC-CccEEEEccC
Q 008209 22 EAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRP-DLKLVVMSAT 72 (574)
Q Consensus 22 ~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~-~~klvlmSAT 72 (574)
.+...|...++.++||||+|. ++....=++|| .+...| +..+|+.|.-
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~--m~~~AaNaLLK-tLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADA--INRAACNALLK-TLEEPSPGRYLWLISAQ 152 (319)
T ss_pred HHhhCcccCCcEEEEeccHhh--hCHHHHHHHHH-HhhCCCCCCeEEEEECC
Confidence 334467778999999999996 56666666666 455544 4556666543
No 333
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=28.19 E-value=2.7e+02 Score=29.40 Aligned_cols=61 Identities=16% Similarity=0.130 Sum_probs=43.7
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 200 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ 200 (574)
...--.||..||++=+..+++..+. ++. ..++.+..+-||+....|...+..- ..|||||+
T Consensus 127 p~~~~~lVLtPtRELA~QI~e~fe~----Lg~-~iglr~~~lvGG~~m~~q~~~L~kk-----------PhilVaTP 187 (476)
T KOG0330|consen 127 PKLFFALVLTPTRELAQQIAEQFEA----LGS-GIGLRVAVLVGGMDMMLQANQLSKK-----------PHILVATP 187 (476)
T ss_pred CCCceEEEecCcHHHHHHHHHHHHH----hcc-ccCeEEEEEecCchHHHHHHHhhcC-----------CCEEEeCc
Confidence 3456799999999876666665543 222 3578999999999988776554433 46899996
No 334
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=28.18 E-value=2.9e+02 Score=34.74 Aligned_cols=79 Identities=18% Similarity=0.185 Sum_probs=55.1
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhh-------cCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEe
Q 008209 126 SGDILVFLTGEEEIEDACRKITKEITN-------MGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVS 198 (574)
Q Consensus 126 ~g~iLVFl~~~~ei~~~~~~L~~~~~~-------~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kviva 198 (574)
+..+|+..|+++=+..+.+.|+.-+.. ++....++.|...||+.+..+|.+..+.. -.|||+
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~p-----------pdILVT 105 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRNP-----------PDILIT 105 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcCC-----------CCEEEe
Confidence 467999999999888888777643221 12223468899999999999988765543 479999
Q ss_pred ccc-----ccc-c-ccCCCeEEEE
Q 008209 199 TNI-----AET-S-LTIDGIVYVI 215 (574)
Q Consensus 199 T~i-----ae~-g-itip~v~~VI 215 (574)
|+= +.+ . -.+.+|++||
T Consensus 106 TPEsL~~LLtsk~r~~L~~Vr~VI 129 (1490)
T PRK09751 106 TPESLYLMLTSRARETLRGVETVI 129 (1490)
T ss_pred cHHHHHHHHhhhhhhhhccCCEEE
Confidence 973 111 1 2567787766
No 335
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=27.96 E-value=1.5e+02 Score=30.21 Aligned_cols=41 Identities=27% Similarity=0.522 Sum_probs=23.4
Q ss_pred CCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhC-CCccEEEEc
Q 008209 27 PLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR-PDLKLVVMS 70 (574)
Q Consensus 27 ~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~-~~~klvlmS 70 (574)
|...+.++|||||+|. +..+. ...+..++... +..++|+.+
T Consensus 121 ~~~~~~~vlilDe~~~--l~~~~-~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 121 PLSADYKTILLDNAEA--LREDA-QQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCCCCcEEEEeCccc--CCHHH-HHHHHHHHHhccCCCeEEEEe
Confidence 4556788999999995 33332 23344444433 345555543
No 336
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.42 E-value=1.3e+02 Score=34.02 Aligned_cols=46 Identities=24% Similarity=0.445 Sum_probs=26.8
Q ss_pred HHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCC-ccEEEEc
Q 008209 22 EAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPD-LKLVVMS 70 (574)
Q Consensus 22 ~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~-~klvlmS 70 (574)
.+...|...++.+|||||+|. +..... ..|.+.+...++ ..+|+.+
T Consensus 118 ~~~~~P~~~~~KVvIIdEad~--Lt~~a~-naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 118 NVRYGPQKGRYRVYIIDEVHM--LSTAAF-NAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred HHHhhhhcCCCEEEEEeChhh--cCHHHH-HHHHHHHhCCCCCeEEEEEe
Confidence 334457889999999999996 333222 233333444433 4444443
No 337
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=27.05 E-value=20 Score=44.29 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=44.4
Q ss_pred HhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCC
Q 008209 174 QQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGR 253 (574)
Q Consensus 174 q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR 253 (574)
|..++..+.... .+++++|.+++-|+|+|-..-||-. ..|....+|+|+.||+-+
T Consensus 343 ~~~vl~~~~~~~-------ln~L~~~~~~~e~~d~~~~~~~~~~------------------~~~~~~~~~vq~~~r~~~ 397 (1606)
T KOG0701|consen 343 QAEVLRRFHFHE-------LNLLIATSVLEEGVDVPKCNLVVLF------------------DAPTYYRSYVQKKGRARA 397 (1606)
T ss_pred hHHHHHHHhhhh-------hhHHHHHHHHHhhcchhhhhhheec------------------cCcchHHHHHHhhccccc
Confidence 444555555555 8999999999999999999888832 237888999999999866
Q ss_pred CC
Q 008209 254 TQ 255 (574)
Q Consensus 254 ~~ 255 (574)
..
T Consensus 398 ~~ 399 (1606)
T KOG0701|consen 398 AD 399 (1606)
T ss_pred ch
Confidence 54
No 338
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=26.81 E-value=2e+02 Score=33.46 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=43.4
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 200 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ 200 (574)
.++..+|+.+|+++=+....+.+.+.. ..++.+..++|+.+.++|..+-+. ..||++|+
T Consensus 79 ~~~~~aL~l~PtraLa~q~~~~l~~l~------~~~i~v~~~~Gdt~~~~r~~i~~~------------~~IivtTP 137 (742)
T TIGR03817 79 DPRATALYLAPTKALAADQLRAVRELT------LRGVRPATYDGDTPTEERRWAREH------------ARYVLTNP 137 (742)
T ss_pred CCCcEEEEEcChHHHHHHHHHHHHHhc------cCCeEEEEEeCCCCHHHHHHHhcC------------CCEEEECh
Confidence 456789999999998888888877532 235788889999887766544221 46999996
No 339
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=26.61 E-value=98 Score=33.49 Aligned_cols=65 Identities=11% Similarity=0.178 Sum_probs=36.5
Q ss_pred CCCeEEEchHHHHHHHh----cCC------CCCCccEEEEecCCCCCc---chHHHHHHHHHHHhhCCCccEEEEccCCC
Q 008209 8 LLGGRYLTDGMLLREAM----TDP------LLERYKVIVLDEAHERTL---ATDVLFGLLKEVLKNRPDLKLVVMSATLE 74 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~----~~~------~L~~~~~vIiDE~HeR~~---~~d~ll~~lk~~~~~~~~~klvlmSATl~ 74 (574)
+..++|.|..-+.+++. ... .+.+++++||||+|.-.. ..+.++.++..+... + +.++++++..
T Consensus 178 ~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~--~-~~iiits~~~ 254 (450)
T PRK00149 178 NAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEA--G-KQIVLTSDRP 254 (450)
T ss_pred CCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC--C-CcEEEECCCC
Confidence 45688888876665442 111 356789999999994211 223445555444332 2 3355566544
Q ss_pred H
Q 008209 75 A 75 (574)
Q Consensus 75 ~ 75 (574)
+
T Consensus 255 p 255 (450)
T PRK00149 255 P 255 (450)
T ss_pred H
Confidence 3
No 340
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=26.58 E-value=2.1e+02 Score=30.32 Aligned_cols=74 Identities=16% Similarity=0.166 Sum_probs=49.3
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccc---
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNI--- 201 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~i--- 201 (574)
.+..+||..|+++-...+.-...+.. ..++.-+.+||+-...+|.+-+ +.| ..||+||+=
T Consensus 293 ~~p~~lvl~ptreLalqie~e~~kys------yng~ksvc~ygggnR~eqie~l---krg--------veiiiatPgrln 355 (629)
T KOG0336|consen 293 NGPGVLVLTPTRELALQIEGEVKKYS------YNGLKSVCVYGGGNRNEQIEDL---KRG--------VEIIIATPGRLN 355 (629)
T ss_pred CCCceEEEeccHHHHHHHHhHHhHhh------hcCcceEEEecCCCchhHHHHH---hcC--------ceEEeeCCchHh
Confidence 45679999999886655544444322 2456678888888777775444 333 589999973
Q ss_pred ---ccccccCCCeEEEE
Q 008209 202 ---AETSLTIDGIVYVI 215 (574)
Q Consensus 202 ---ae~gitip~v~~VI 215 (574)
..-.|++..|+|+|
T Consensus 356 dL~~~n~i~l~siTYlV 372 (629)
T KOG0336|consen 356 DLQMDNVINLASITYLV 372 (629)
T ss_pred hhhhcCeeeeeeeEEEE
Confidence 33456777788776
No 341
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=26.46 E-value=1.6e+02 Score=31.58 Aligned_cols=86 Identities=14% Similarity=0.221 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHHHHhc---CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCC
Q 008209 107 RDYLEAAIRTVVQIHMC---EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPP 183 (574)
Q Consensus 107 ~~~~~~~~~~~~~i~~~---~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~ 183 (574)
..|+-..++.++.-... +.+...+|.+||++-+..++..+++.....+ ..+.++.+-+.++......++...
T Consensus 71 ~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~---k~lr~~nl~s~~sdsv~~~~L~d~-- 145 (569)
T KOG0346|consen 71 AAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCS---KDLRAINLASSMSDSVNSVALMDL-- 145 (569)
T ss_pred HHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHH---HhhhhhhhhcccchHHHHHHHccC--
Confidence 34555566666554332 2355789999999999998888877544321 256778888888887776665544
Q ss_pred CCCCCCCCCcEEEEeccc-----ccccc
Q 008209 184 PSKEGGPPGRKIVVSTNI-----AETSL 206 (574)
Q Consensus 184 g~~~~~~~~~kvivaT~i-----ae~gi 206 (574)
-.|||+|+. ++.|+
T Consensus 146 ---------pdIvV~TP~~ll~~~~~~~ 164 (569)
T KOG0346|consen 146 ---------PDIVVATPAKLLRHLAAGV 164 (569)
T ss_pred ---------CCeEEeChHHHHHHHhhcc
Confidence 479999973 45555
No 342
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=25.95 E-value=1.6e+02 Score=32.12 Aligned_cols=78 Identities=12% Similarity=0.098 Sum_probs=54.2
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCH-HHHhhhcCCCCCCCCCCCCCCcEEEEeccc---
Q 008209 126 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPP-AMQQKIFEPAPPPSKEGGPPGRKIVVSTNI--- 201 (574)
Q Consensus 126 ~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~-~~q~~v~~~~~~g~~~~~~~~~kvivaT~i--- 201 (574)
.-..+|.+|++.-+..++..+.+... ..++.|+.+-|+-+. .|+.+.....+... ..|+|||+-
T Consensus 215 ~LRavVivPtr~L~~QV~~~f~~~~~-----~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~-------~DIlVaTPGRLV 282 (620)
T KOG0350|consen 215 RLRAVVIVPTRELALQVYDTFKRLNS-----GTGLAVCSLSGQNSLEDEARQLASDPPECR-------IDILVATPGRLV 282 (620)
T ss_pred ceEEEEEeeHHHHHHHHHHHHHHhcc-----CCceEEEecccccchHHHHHHHhcCCCccc-------cceEEcCchHHH
Confidence 35789999999999999998877432 246778887776553 33444444444434 799999972
Q ss_pred ----ccccccCCCeEEEE
Q 008209 202 ----AETSLTIDGIVYVI 215 (574)
Q Consensus 202 ----ae~gitip~v~~VI 215 (574)
.--|+++...+|.|
T Consensus 283 DHl~~~k~f~Lk~LrfLV 300 (620)
T KOG0350|consen 283 DHLNNTKSFDLKHLRFLV 300 (620)
T ss_pred HhccCCCCcchhhceEEE
Confidence 24678888888754
No 343
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=25.77 E-value=52 Score=28.02 Aligned_cols=14 Identities=21% Similarity=0.254 Sum_probs=10.9
Q ss_pred CccEEEEecCCCCC
Q 008209 31 RYKVIVLDEAHERT 44 (574)
Q Consensus 31 ~~~~vIiDE~HeR~ 44 (574)
.-.+|+|||+|.-.
T Consensus 58 ~~~vl~iDe~d~l~ 71 (132)
T PF00004_consen 58 KPCVLFIDEIDKLF 71 (132)
T ss_dssp TSEEEEEETGGGTS
T ss_pred cceeeeeccchhcc
Confidence 35899999999533
No 344
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=25.67 E-value=1.6e+02 Score=27.48 Aligned_cols=44 Identities=14% Similarity=0.226 Sum_probs=27.8
Q ss_pred CCccEEEEecCC----CCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHH
Q 008209 30 ERYKVIVLDEAH----ERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAE 76 (574)
Q Consensus 30 ~~~~~vIiDE~H----eR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~ 76 (574)
..|++||+||+= .--+..|-++.+++. +++++-+|++.-..+.+
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~---rp~~~evVlTGR~~p~~ 143 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQE---RPGHQHVIITGRGCPQD 143 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHh---CCCCCEEEEECCCCCHH
Confidence 479999999997 222344555555543 45566777776665433
No 345
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=25.63 E-value=84 Score=28.10 Aligned_cols=63 Identities=16% Similarity=0.108 Sum_probs=37.1
Q ss_pred EEEEeccc--ccccccCCCe--EEEEcCCcccceeecCCCC-----------cce--eeeeeccHhhHHHhcccCCCCCC
Q 008209 194 KIVVSTNI--AETSLTIDGI--VYVIDPGFAKQKVYNPRVR-----------VES--LLVSPISKASAHQRSGRAGRTQP 256 (574)
Q Consensus 194 kvivaT~i--ae~gitip~v--~~VID~g~~k~~~y~~~~~-----------~~~--l~~~~is~~~~~QR~GRaGR~~~ 256 (574)
-|++++.- ..-|||+|+- +.||=.|+.-....||... ... ....|...-...|-+||+=|...
T Consensus 49 ~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~ 128 (142)
T smart00491 49 ALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKN 128 (142)
T ss_pred EEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCcc
Confidence 58888876 7889999983 5666556533222222100 000 01123344567899999988875
No 346
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=25.10 E-value=7.2e+02 Score=28.71 Aligned_cols=13 Identities=23% Similarity=0.575 Sum_probs=11.8
Q ss_pred CCccEEEEecCCC
Q 008209 30 ERYKVIVLDEAHE 42 (574)
Q Consensus 30 ~~~~~vIiDE~He 42 (574)
..|++|+|||++.
T Consensus 208 ~~~~~IlVDEfQD 220 (726)
T TIGR01073 208 RKFQYIHVDEYQD 220 (726)
T ss_pred HhCCEEEEEcccc
Confidence 5899999999996
No 347
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=24.92 E-value=1.1e+02 Score=34.33 Aligned_cols=45 Identities=29% Similarity=0.420 Sum_probs=25.9
Q ss_pred HhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCC-CccEEEEc
Q 008209 23 AMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRP-DLKLVVMS 70 (574)
Q Consensus 23 l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~-~~klvlmS 70 (574)
+...|...++.++||||+|. +..+..=+ |...+...| ...+|+++
T Consensus 111 ~~~~P~~~~~KVIIIDEad~--Lt~~A~Na-LLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 111 INYLPTTFKYKVYIIDEAHM--LSTSAWNA-LLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred HHhchhhCCcEEEEEechHh--CCHHHHHH-HHHHHHhCCCcEEEEEEC
Confidence 34457778899999999995 33333323 333344443 34444433
No 348
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=24.79 E-value=1.1e+02 Score=32.49 Aligned_cols=69 Identities=7% Similarity=0.184 Sum_probs=38.8
Q ss_pred CCCeEEEchHHHHHHHh----cCC------CCCCccEEEEecCCCC-C--cchHHHHHHHHHHHhhCCCccEEEEccCCC
Q 008209 8 LLGGRYLTDGMLLREAM----TDP------LLERYKVIVLDEAHER-T--LATDVLFGLLKEVLKNRPDLKLVVMSATLE 74 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~----~~~------~L~~~~~vIiDE~HeR-~--~~~d~ll~~lk~~~~~~~~~klvlmSATl~ 74 (574)
+..++|+|..-+.+.+. .+. .+.++++|||||+|.- + ...+.++.++..+... +.+ ++++++..
T Consensus 166 ~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~--~~~-iiits~~~ 242 (405)
T TIGR00362 166 NAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHEN--GKQ-IVLTSDRP 242 (405)
T ss_pred CCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC--CCC-EEEecCCC
Confidence 46788888776655442 111 2556889999999931 1 1223455555544332 333 55666655
Q ss_pred HHHHH
Q 008209 75 AEKFQ 79 (574)
Q Consensus 75 ~~~~~ 79 (574)
+..+.
T Consensus 243 p~~l~ 247 (405)
T TIGR00362 243 PKELP 247 (405)
T ss_pred HHHHh
Confidence 55443
No 349
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=24.53 E-value=1.3e+02 Score=31.27 Aligned_cols=51 Identities=25% Similarity=0.257 Sum_probs=31.7
Q ss_pred HHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCC-CccEEEEccC
Q 008209 19 LLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRP-DLKLVVMSAT 72 (574)
Q Consensus 19 Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~-~~klvlmSAT 72 (574)
|.+.+...|.-.++.++|||++|. ++....=++||.+ ...| +.-+|+.|.-
T Consensus 120 l~~~~~~~~~~~~~kV~iI~~ae~--m~~~AaNaLLKtL-EEPp~~t~fiL~t~~ 171 (342)
T PRK06964 120 LLDFCGVGTHRGGARVVVLYPAEA--LNVAAANALLKTL-EEPPPGTVFLLVSAR 171 (342)
T ss_pred HHHHhccCCccCCceEEEEechhh--cCHHHHHHHHHHh-cCCCcCcEEEEEECC
Confidence 344445567788999999999996 5655555566553 4443 3444444443
No 350
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=24.29 E-value=1.1e+02 Score=34.53 Aligned_cols=63 Identities=13% Similarity=0.198 Sum_probs=38.1
Q ss_pred cCCCeEEEchHHHHHHHhc---CC-------CCCCccEEEEecCCCCCc---chHHHHHHHHHHHhhCCCccEEEEcc
Q 008209 7 VLLGGRYLTDGMLLREAMT---DP-------LLERYKVIVLDEAHERTL---ATDVLFGLLKEVLKNRPDLKLVVMSA 71 (574)
Q Consensus 7 ~~~~I~~~T~g~Ll~~l~~---~~-------~L~~~~~vIiDE~HeR~~---~~d~ll~~lk~~~~~~~~~klvlmSA 71 (574)
++..++|+|..-+++.+.. +. .+.++++|||||+|--.. ..+.++.++..+... +.+||+.|-
T Consensus 343 ~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~--gk~IIITSd 418 (617)
T PRK14086 343 PGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNA--NKQIVLSSD 418 (617)
T ss_pred CCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhc--CCCEEEecC
Confidence 3567899999888766632 11 246789999999993211 123455555554332 345555443
No 351
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=23.36 E-value=91 Score=31.18 Aligned_cols=28 Identities=32% Similarity=0.665 Sum_probs=19.7
Q ss_pred CCccEEEEecCCCCCcchHHHHHHHHHHHhh
Q 008209 30 ERYKVIVLDEAHERTLATDVLFGLLKEVLKN 60 (574)
Q Consensus 30 ~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~ 60 (574)
..|++|+|||++. .+..-+.+++.+...
T Consensus 255 ~~~~~i~IDE~QD---~s~~Q~~il~~l~~~ 282 (315)
T PF00580_consen 255 QRYDHILIDEFQD---TSPLQLRILKKLFKN 282 (315)
T ss_dssp HHSSEEEESSGGG----BHHHHHHHHHHHTT
T ss_pred hhCCeEEeEcccc---CCHHHHHHHHHHHHh
Confidence 5799999999995 333456667666554
No 352
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=23.31 E-value=1.3e+02 Score=33.93 Aligned_cols=59 Identities=17% Similarity=0.101 Sum_probs=46.6
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc
Q 008209 126 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 200 (574)
Q Consensus 126 ~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ 200 (574)
.|.+||..|+++=+......+.. .++.+..++++.+.+++..++.....|. .+++++|+
T Consensus 65 ~g~tlVisPl~sL~~dqv~~l~~---------~gi~~~~~~s~~~~~~~~~~~~~~~~g~-------~~il~~tP 123 (607)
T PRK11057 65 DGLTLVVSPLISLMKDQVDQLLA---------NGVAAACLNSTQTREQQLEVMAGCRTGQ-------IKLLYIAP 123 (607)
T ss_pred CCCEEEEecHHHHHHHHHHHHHH---------cCCcEEEEcCCCCHHHHHHHHHHHhCCC-------CcEEEECh
Confidence 57899999999888777777764 3466788899999998888877776666 78888874
No 353
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=23.11 E-value=62 Score=37.85 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=26.5
Q ss_pred CCCeEEEchHHH-----HHHHhcCC---CCCCccEEEEecCC
Q 008209 8 LLGGRYLTDGML-----LREAMTDP---LLERYKVIVLDEAH 41 (574)
Q Consensus 8 ~~~I~~~T~g~L-----l~~l~~~~---~L~~~~~vIiDE~H 41 (574)
..+|+|+|++-| .+.+..++ ....+.+.|||||+
T Consensus 174 ~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvD 215 (939)
T PRK12902 174 ACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVD 215 (939)
T ss_pred CCCeEEecCCcccccchhhhhcccccccccCccceEEEeccc
Confidence 478999999876 55654433 46889999999999
No 354
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=22.99 E-value=1.3e+02 Score=31.01 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=29.8
Q ss_pred HHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCC-CccEEEEcc
Q 008209 21 REAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRP-DLKLVVMSA 71 (574)
Q Consensus 21 ~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~-~~klvlmSA 71 (574)
+.+...|.-.+++++|||++|. ++....=++||.+ ...| +.-+|+.|.
T Consensus 97 ~~~~~~~~~g~~KV~iI~~a~~--m~~~AaNaLLKtL-EEPp~~~~fiL~t~ 145 (325)
T PRK06871 97 EKVSQHAQQGGNKVVYIQGAER--LTEAAANALLKTL-EEPRPNTYFLLQAD 145 (325)
T ss_pred HHHhhccccCCceEEEEechhh--hCHHHHHHHHHHh-cCCCCCeEEEEEEC
Confidence 3444567788999999999996 5555555555543 4443 344444433
No 355
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=22.94 E-value=1.7e+02 Score=30.82 Aligned_cols=48 Identities=13% Similarity=0.241 Sum_probs=33.3
Q ss_pred CCCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCCHHH
Q 008209 29 LERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLEAEK 77 (574)
Q Consensus 29 L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~~~~ 77 (574)
+.++++|+||++- |+..-+.+...+..+.. ..+.-+++++|||...+.
T Consensus 213 l~~~DlVLIDTaG-~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~ 261 (374)
T PRK14722 213 LRNKHMVLIDTIG-MSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDT 261 (374)
T ss_pred hcCCCEEEEcCCC-CCcccHHHHHHHHHHhccCCCCeEEEEecCccChHH
Confidence 5688999999997 55555566666665533 234456889999985443
No 356
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=22.85 E-value=1.3e+02 Score=36.45 Aligned_cols=59 Identities=19% Similarity=0.165 Sum_probs=44.6
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCC--CCCCCCCCCcEEEEecc
Q 008209 126 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPP--PSKEGGPPGRKIVVSTN 200 (574)
Q Consensus 126 ~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~--g~~~~~~~~~kvivaT~ 200 (574)
+|.+||..|+++=+..-...|.. .++.+..+.|+++..++..++..... |. .+||+.|+
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~~---------~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~-------~~ILyvTP 560 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLLQ---------ANIPAASLSAGMEWAEQLEILQELSSEYSK-------YKLLYVTP 560 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHHh---------CCCeEEEEECCCCHHHHHHHHHHHHhcCCC-------CCEEEECh
Confidence 56789999988877644444433 46778899999999999888876654 44 78999997
No 357
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=22.74 E-value=3.6e+02 Score=23.22 Aligned_cols=70 Identities=10% Similarity=0.184 Sum_probs=43.2
Q ss_pred CCCCCcHHHHHHHHHHHHhCCCCchhHhhhcCCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCchhHHHHHHHHHhc
Q 008209 396 GHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSNDFNSRDYYVNIRKAMLAG 474 (574)
Q Consensus 396 ~~~~sD~l~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~ir~qL~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~g 474 (574)
+.-..+.+.++.+|-.. .++-++..+..++||.++ |..|-++++++|....... ........|...|-.|
T Consensus 32 ~~L~~E~~~Fi~~Fi~~--rGnlKe~e~~lgiSYPTv------R~rLd~ii~~lg~~~~~~~-~~~~~~~~IL~~L~~G 101 (113)
T PF09862_consen 32 ARLSPEQLEFIKLFIKN--RGNLKEMEKELGISYPTV------RNRLDKIIEKLGYEEDEEE-EEEDERKEILDKLEKG 101 (113)
T ss_pred hcCCHHHHHHHHHHHHh--cCCHHHHHHHHCCCcHHH------HHHHHHHHHHhCCCCCccc-ccchhHHHHHHHHHcC
Confidence 34455677777777654 355678899999999985 4567788888887221111 1123334555555544
No 358
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=22.40 E-value=1.4e+02 Score=31.96 Aligned_cols=54 Identities=28% Similarity=0.342 Sum_probs=32.8
Q ss_pred HHHHHHhcCCCCCCccEEEEecCC----CC---------CcchHHHHHHHHHHHhhCCCccEEEEccCC
Q 008209 18 MLLREAMTDPLLERYKVIVLDEAH----ER---------TLATDVLFGLLKEVLKNRPDLKLVVMSATL 73 (574)
Q Consensus 18 ~Ll~~l~~~~~L~~~~~vIiDE~H----eR---------~~~~d~ll~~lk~~~~~~~~~klvlmSATl 73 (574)
.++|-+..=--....++|.|||+| +| -+-+.+++.+.-.. ..++-||++++||=
T Consensus 232 K~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~--s~~~drvlvigaTN 298 (428)
T KOG0740|consen 232 KLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKN--SAPDDRVLVIGATN 298 (428)
T ss_pred HHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhcccc--CCCCCeEEEEecCC
Confidence 455544322223478899999999 33 33455555543221 33456999999994
No 359
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=22.11 E-value=70 Score=25.20 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=24.8
Q ss_pred CcHHHHHHHHHHHHHcCCccCCC---CcChhhhhhc
Q 008209 309 PAPETLMRALEVLNYLGALDDDG---NLTEMGEKMS 341 (574)
Q Consensus 309 P~~~~l~~al~~L~~lgald~~~---~lT~lG~~~~ 341 (574)
-+...+...++.|...|+|..++ .||+.|+.+.
T Consensus 31 L~~~~~~~yL~~L~~~gLI~~~~~~Y~lTekG~~~l 66 (77)
T PF14947_consen 31 LNYSTLKKYLKELEEKGLIKKKDGKYRLTEKGKEFL 66 (77)
T ss_dssp --HHHHHHHHHHHHHTTSEEEETTEEEE-HHHHHHH
T ss_pred cCHHHHHHHHHHHHHCcCeeCCCCEEEECccHHHHH
Confidence 35677899999999999997644 4999998764
No 360
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=22.10 E-value=6.2e+02 Score=30.24 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=28.9
Q ss_pred HHHHHHHHHHcCCccCCCCcChhhhhhccCCC
Q 008209 314 LMRALEVLNYLGALDDDGNLTEMGEKMSEFPL 345 (574)
Q Consensus 314 l~~al~~L~~lgald~~~~lT~lG~~~~~lpl 345 (574)
..+-++.|+.+|++|+.+.++..||..+++--
T Consensus 1056 y~~RlevLk~~g~vD~~~~V~lkGRvAceI~s 1087 (1248)
T KOG0947|consen 1056 YHNRLEVLKPLGFVDEMRTVLLKGRVACEINS 1087 (1248)
T ss_pred HHHHHHHHhhcCcccccceeeecceeeeeecC
Confidence 56678999999999999999999999998876
No 361
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=22.07 E-value=1.2e+02 Score=30.71 Aligned_cols=44 Identities=30% Similarity=0.546 Sum_probs=27.7
Q ss_pred cCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEc
Q 008209 25 TDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMS 70 (574)
Q Consensus 25 ~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmS 70 (574)
..+...++.+|||||++. ++.|..=+++|.+-....+..+|+.+
T Consensus 103 ~~~~~~~~kviiidead~--mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 103 ESPLEGGYKVVIIDEADK--LTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred cCCCCCCceEEEeCcHHH--HhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 344567899999999995 56666655555443333445555444
No 362
>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found. This protein is required for assembly of functional endoplasmic reticulum translocons [, ]. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. ; PDB: 3IM2_A 3IM1_A 3HIB_A 2Q0Z_X.
Probab=21.81 E-value=73 Score=32.41 Aligned_cols=29 Identities=28% Similarity=0.300 Sum_probs=13.5
Q ss_pred cChhhhhhccCCCCHHHHHHHHhccCCCC
Q 008209 333 LTEMGEKMSEFPLDPQMSKMLVESPKYNC 361 (574)
Q Consensus 333 lT~lG~~~~~lpl~p~~~~~ll~~~~~~c 361 (574)
.|++|++|+.+.|.....+++.....-++
T Consensus 1 pT~lG~i~s~yyi~~~T~~~~~~~l~~~~ 29 (314)
T PF02889_consen 1 PTELGRIMSRYYISFETMENFFESLKEDM 29 (314)
T ss_dssp ---CGC--------HHHHHHHHHH--TT-
T ss_pred CCHHHHHHHHhcccHHHHHHHHHHCCCCC
Confidence 49999999999999999999998766554
No 363
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=21.67 E-value=2.7e+02 Score=32.99 Aligned_cols=70 Identities=17% Similarity=0.344 Sum_probs=52.8
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEec-ccc
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVST-NIA 202 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT-~ia 202 (574)
.+....|++-|+++=++.=.+.|.+....++. ++.+..++|..++++++.+++..+ .||++| +++
T Consensus 113 ~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~---~v~~~~y~Gdt~~~~r~~~~~~pp-----------~IllTNpdML 178 (851)
T COG1205 113 DPSARALLLYPTNALANDQAERLRELISDLPG---KVTFGRYTGDTPPEERRAIIRNPP-----------DILLTNPDML 178 (851)
T ss_pred CcCccEEEEechhhhHhhHHHHHHHHHHhCCC---cceeeeecCCCChHHHHHHHhCCC-----------CEEEeCHHHH
Confidence 56778999999999888888888776655332 688999999999999987777653 577764 555
Q ss_pred ccccc
Q 008209 203 ETSLT 207 (574)
Q Consensus 203 e~git 207 (574)
+..+.
T Consensus 179 h~~ll 183 (851)
T COG1205 179 HYLLL 183 (851)
T ss_pred HHHhc
Confidence 55443
No 364
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=21.34 E-value=2.3e+02 Score=26.86 Aligned_cols=44 Identities=23% Similarity=0.288 Sum_probs=26.6
Q ss_pred CCccEEEEecCC----CCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHH
Q 008209 30 ERYKVIVLDEAH----ERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAE 76 (574)
Q Consensus 30 ~~~~~vIiDE~H----eR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~ 76 (574)
..|++||+||+= .--+..+-++.+++. +.+++-+|++--..+.+
T Consensus 114 ~~ydlvVLDEi~~Al~~gli~~eevi~~L~~---rp~~~evVlTGR~~p~~ 161 (191)
T PRK05986 114 ESYDLVVLDELTYALKYGYLDVEEVLEALNA---RPGMQHVVITGRGAPRE 161 (191)
T ss_pred CCCCEEEEehhhHHHHCCCccHHHHHHHHHc---CCCCCEEEEECCCCCHH
Confidence 479999999986 222344455555543 44456677766555433
No 365
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=21.19 E-value=1.2e+02 Score=31.02 Aligned_cols=39 Identities=18% Similarity=0.478 Sum_probs=25.6
Q ss_pred CCCccEEEEecCCCCCcchHHHHHHHHHHHhh-CCCccEEEEc
Q 008209 29 LERYKVIVLDEAHERTLATDVLFGLLKEVLKN-RPDLKLVVMS 70 (574)
Q Consensus 29 L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~-~~~~klvlmS 70 (574)
...+.+||+||+|- +..|..-++.| .+.. ....++++..
T Consensus 127 ~~~fKiiIlDEcds--mtsdaq~aLrr-~mE~~s~~trFiLIc 166 (346)
T KOG0989|consen 127 CPPFKIIILDECDS--MTSDAQAALRR-TMEDFSRTTRFILIC 166 (346)
T ss_pred CCcceEEEEechhh--hhHHHHHHHHH-HHhccccceEEEEEc
Confidence 56789999999995 67777655544 4443 3345666543
No 366
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=21.11 E-value=2.3e+02 Score=30.62 Aligned_cols=69 Identities=19% Similarity=0.281 Sum_probs=38.3
Q ss_pred cCCCeEEEchHHHHHHHhc----CC--C----C-CCccEEEEecCCCC-Cc--chHHHHHHHHHHHhhCCCccEEEEccC
Q 008209 7 VLLGGRYLTDGMLLREAMT----DP--L----L-ERYKVIVLDEAHER-TL--ATDVLFGLLKEVLKNRPDLKLVVMSAT 72 (574)
Q Consensus 7 ~~~~I~~~T~g~Ll~~l~~----~~--~----L-~~~~~vIiDE~HeR-~~--~~d~ll~~lk~~~~~~~~~klvlmSAT 72 (574)
++..++|+|..-+++.+.. +. . + .+.++++|||+|.= +. ..+.++..+..+... + +.++++++
T Consensus 159 ~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~--~-k~iIitsd 235 (440)
T PRK14088 159 PDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDS--G-KQIVICSD 235 (440)
T ss_pred CCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHc--C-CeEEEECC
Confidence 3467899998887776632 11 0 1 25889999999931 11 123344555444332 2 34555555
Q ss_pred CCHHHH
Q 008209 73 LEAEKF 78 (574)
Q Consensus 73 l~~~~~ 78 (574)
.++..+
T Consensus 236 ~~p~~l 241 (440)
T PRK14088 236 REPQKL 241 (440)
T ss_pred CCHHHH
Confidence 554443
No 367
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=21.01 E-value=77 Score=29.82 Aligned_cols=43 Identities=14% Similarity=0.283 Sum_probs=19.8
Q ss_pred CccEEEEecCC----CCCcchHHHHHHHHHHHh-hCCCccEEEEccCC
Q 008209 31 RYKVIVLDEAH----ERTLATDVLFGLLKEVLK-NRPDLKLVVMSATL 73 (574)
Q Consensus 31 ~~~~vIiDE~H----eR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl 73 (574)
.=++|||||+| .|.......-..+..+.. +.-+.-+++++-.+
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~ 126 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSP 126 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-G
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCH
Confidence 56899999999 333321111222322222 33467788887776
No 368
>PRK05255 hypothetical protein; Provisional
Probab=20.98 E-value=76 Score=29.45 Aligned_cols=51 Identities=24% Similarity=0.436 Sum_probs=41.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCccCCCCcChhh-hhhccCCCCHHHHHHHHhccCC
Q 008209 304 DFMDPPAPETLMRALEVLNYLGALDDDGNLTEMG-EKMSEFPLDPQMSKMLVESPKY 359 (574)
Q Consensus 304 ~~l~~P~~~~l~~al~~L~~lgald~~~~lT~lG-~~~~~lpl~p~~~~~ll~~~~~ 359 (574)
.-+++|+...+.+.+..|+.+| .+|+.|+ ..+.++|++..+-..|+.+-.+
T Consensus 12 ~~~~~~SKSq~KRe~~alq~LG-----~~L~~Ls~~ql~~lpL~e~L~~Ai~ea~ri 63 (171)
T PRK05255 12 DEIIWVSKSQIKRDAEALQDLG-----EELVELSKDQLAKLPLDEDLRDAILEAQRI 63 (171)
T ss_pred ccccCCChHHHHHHHHHHHHHH-----HHHHhCCHHHHhcCCCCHHHHHHHHHHhhh
Confidence 4456789999999999999998 5677776 5788999999998888777543
No 369
>PRK04132 replication factor C small subunit; Provisional
Probab=20.72 E-value=1.8e+02 Score=34.20 Aligned_cols=36 Identities=25% Similarity=0.505 Sum_probs=22.4
Q ss_pred CccEEEEecCCCCCcchHHHHHHHHHHHhhC-CCccEEEE
Q 008209 31 RYKVIVLDEAHERTLATDVLFGLLKEVLKNR-PDLKLVVM 69 (574)
Q Consensus 31 ~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~-~~~klvlm 69 (574)
++.+|||||+|. ++.+..-+ |++.+... ...++|+.
T Consensus 630 ~~KVvIIDEaD~--Lt~~AQnA-LLk~lEep~~~~~FILi 666 (846)
T PRK04132 630 SFKIIFLDEADA--LTQDAQQA-LRRTMEMFSSNVRFILS 666 (846)
T ss_pred CCEEEEEECccc--CCHHHHHH-HHHHhhCCCCCeEEEEE
Confidence 688999999996 44454444 44445543 35555554
No 370
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=20.71 E-value=80 Score=29.40 Aligned_cols=75 Identities=20% Similarity=0.252 Sum_probs=40.4
Q ss_pred CCCeEEEchHHHHHHHhcC---C-------CCCCccEEEEecCCCCCcchHHHHHHHHHHHhhC-CCccEEEEccCCCHH
Q 008209 8 LLGGRYLTDGMLLREAMTD---P-------LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR-PDLKLVVMSATLEAE 76 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~---~-------~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~-~~~klvlmSATl~~~ 76 (574)
+..+.|+|..-|++.+... . .+.+++++||||+---.. ++.....+-.++..| .+..+|+.| =++.+
T Consensus 75 g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~~~-~~~~~~~l~~ii~~R~~~~~tIiTS-N~~~~ 152 (178)
T PF01695_consen 75 GYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYEPL-SEWEAELLFEIIDERYERKPTIITS-NLSPS 152 (178)
T ss_dssp T--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS----HHHHHCTHHHHHHHHHT-EEEEEE-SS-HH
T ss_pred CcceeEeecCceeccccccccccchhhhcCccccccEecccccceeee-cccccccchhhhhHhhcccCeEeeC-CCchh
Confidence 4568899999999988643 1 256899999999983222 232333333333322 223455544 46888
Q ss_pred HHHhhhCC
Q 008209 77 KFQGYFYG 84 (574)
Q Consensus 77 ~~~~~f~~ 84 (574)
.+.+.+++
T Consensus 153 ~l~~~~~d 160 (178)
T PF01695_consen 153 ELEEVLGD 160 (178)
T ss_dssp HHHT----
T ss_pred hHhhcccc
Confidence 88888864
No 371
>PTZ00095 40S ribosomal protein S19; Provisional
Probab=20.67 E-value=92 Score=28.69 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=25.1
Q ss_pred CcHHHHHHHHHHHHHcCCccCC----C-CcChhhhhh
Q 008209 309 PAPETLMRALEVLNYLGALDDD----G-NLTEMGEKM 340 (574)
Q Consensus 309 P~~~~l~~al~~L~~lgald~~----~-~lT~lG~~~ 340 (574)
-+...+..+++.|+.+|.++.+ | .||+-|+..
T Consensus 117 aSg~iiR~~LQqLE~~glVek~~~~~GR~lT~~Gr~~ 153 (169)
T PTZ00095 117 ASGKILRWICQQLEKLGLVEQGPKKKGRRLTRKGCNF 153 (169)
T ss_pred CchHHHHHHHHHHHHCCCEEecCCCCCCEECHhHHHH
Confidence 3556688999999999999743 4 499999764
No 372
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=20.63 E-value=2e+02 Score=29.62 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=25.4
Q ss_pred HHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHH
Q 008209 19 LLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEV 57 (574)
Q Consensus 19 Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~ 57 (574)
+.+.+...|...+++++|+|++|. ++....-.++|.+
T Consensus 101 l~~~~~~~p~~~~~kV~iiEp~~~--Ld~~a~naLLk~L 137 (325)
T PRK08699 101 IIDNVYLTSVRGGLRVILIHPAES--MNLQAANSLLKVL 137 (325)
T ss_pred HHHHHhhCcccCCceEEEEechhh--CCHHHHHHHHHHH
Confidence 334445567788999999999995 6655555555533
No 373
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=20.57 E-value=2.1e+02 Score=27.22 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=24.5
Q ss_pred CCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccC
Q 008209 30 ERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSAT 72 (574)
Q Consensus 30 ~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSAT 72 (574)
....++|+||++. .++..-.-.+.+.+....++.|+|+.|-.
T Consensus 157 ~~~p~~ilDEvd~-~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~ 198 (220)
T PF02463_consen 157 KPSPFLILDEVDA-ALDEQNRKRLADLLKELSKQSQFIITTHN 198 (220)
T ss_dssp S--SEEEEESTTT-TS-HHHHHHHHHHHHHHTTTSEEEEE-S-
T ss_pred ccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 4567899999983 45554444444444345567999998754
No 374
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=20.51 E-value=2.9e+02 Score=27.44 Aligned_cols=47 Identities=21% Similarity=0.441 Sum_probs=33.7
Q ss_pred ceeEEeecCCc-hhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHH
Q 008209 96 PVEIFYTQEPE-RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITK 148 (574)
Q Consensus 96 ~v~~~y~~~~~-~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~ 148 (574)
+++..+++-|+ +++++. +.... .++|.+.+|+|+.+.++++.+.|++
T Consensus 163 ~vDav~LDmp~PW~~le~----~~~~L--kpgg~~~~y~P~veQv~kt~~~l~~ 210 (256)
T COG2519 163 DVDAVFLDLPDPWNVLEH----VSDAL--KPGGVVVVYSPTVEQVEKTVEALRE 210 (256)
T ss_pred ccCEEEEcCCChHHHHHH----HHHHh--CCCcEEEEEcCCHHHHHHHHHHHHh
Confidence 45666666554 344443 33333 5789999999999999999999987
No 375
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=20.28 E-value=4.5e+02 Score=29.66 Aligned_cols=32 Identities=9% Similarity=0.121 Sum_probs=25.1
Q ss_pred HHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHH
Q 008209 117 VVQIHMCEPSGDILVFLTGEEEIEDACRKITK 148 (574)
Q Consensus 117 ~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~ 148 (574)
++.-......+.|-|-|++..+|..+...|++
T Consensus 646 ii~~mkk~~~etiaVi~kt~~d~~~~~d~lre 677 (747)
T COG3973 646 IIPRMKKRGSETIAVICKTDHDCKAVMDSLRE 677 (747)
T ss_pred HHHHHHhcCCCceEEECCcHHHHHHHHHHHhh
Confidence 33333445688999999999999999999975
No 376
>PLN03025 replication factor C subunit; Provisional
Probab=20.21 E-value=1.3e+02 Score=30.87 Aligned_cols=36 Identities=19% Similarity=0.420 Sum_probs=21.1
Q ss_pred CCccEEEEecCCCCCcchHHHHHHHHHHHhhCCC-ccEEE
Q 008209 30 ERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPD-LKLVV 68 (574)
Q Consensus 30 ~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~-~klvl 68 (574)
.++++|||||+|. +..+.. ..+++.+...++ .++|+
T Consensus 98 ~~~kviiiDE~d~--lt~~aq-~aL~~~lE~~~~~t~~il 134 (319)
T PLN03025 98 GRHKIVILDEADS--MTSGAQ-QALRRTMEIYSNTTRFAL 134 (319)
T ss_pred CCeEEEEEechhh--cCHHHH-HHHHHHHhcccCCceEEE
Confidence 4688999999995 444443 333444554433 44444
Done!