Query 008209
Match_columns 574
No_of_seqs 349 out of 2445
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 20:45:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008209.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008209hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 2E-101 7E-106 877.1 55.9 557 7-570 184-752 (773)
2 3i4u_A ATP-dependent RNA helic 100.0 7.3E-55 2.5E-59 432.8 24.0 248 300-551 5-254 (270)
3 2p6r_A Afuhel308 helicase; pro 100.0 1.9E-45 6.5E-50 417.1 29.5 412 8-444 114-602 (702)
4 2va8_A SSO2462, SKI2-type heli 100.0 1.8E-45 6.2E-50 418.4 27.0 421 8-447 121-626 (715)
5 2zj8_A DNA helicase, putative 100.0 2.1E-42 7.3E-47 393.2 23.3 439 8-478 114-644 (720)
6 4f92_B U5 small nuclear ribonu 100.0 2.4E-30 8.4E-35 313.4 28.1 360 8-383 181-632 (1724)
7 4f92_B U5 small nuclear ribonu 100.0 1.2E-29 4E-34 307.4 23.0 358 8-382 1020-1462(1724)
8 2z83_A Helicase/nucleoside tri 100.0 5.5E-30 1.9E-34 275.7 16.2 220 7-266 88-313 (459)
9 2jlq_A Serine protease subunit 100.0 8.1E-30 2.8E-34 273.9 16.9 221 6-265 85-310 (451)
10 3eiq_A Eukaryotic initiation f 100.0 1.7E-28 5.7E-33 260.1 13.7 223 7-268 158-389 (414)
11 3l9o_A ATP-dependent RNA helic 100.0 1.3E-28 4.6E-33 288.7 13.5 244 6-267 264-598 (1108)
12 4a4z_A Antiviral helicase SKI2 100.0 4.6E-29 1.6E-33 290.1 7.8 291 7-315 122-550 (997)
13 2whx_A Serine protease/ntpase/ 99.9 7.6E-28 2.6E-32 266.9 16.7 223 4-265 250-477 (618)
14 2db3_A ATP-dependent RNA helic 99.9 3.2E-27 1.1E-31 252.6 20.6 218 8-266 179-407 (434)
15 3o8b_A HCV NS3 protease/helica 99.9 3E-27 1E-31 260.5 19.2 217 7-268 296-516 (666)
16 3pey_A ATP-dependent RNA helic 99.9 2.6E-27 8.9E-32 248.8 17.0 229 8-267 121-357 (395)
17 3fht_A ATP-dependent RNA helic 99.9 1.7E-27 5.8E-32 252.0 15.2 229 8-267 143-380 (412)
18 1hv8_A Putative ATP-dependent 99.9 7.7E-27 2.6E-31 242.7 19.6 219 8-268 123-347 (367)
19 2i4i_A ATP-dependent RNA helic 99.9 4.2E-27 1.4E-31 249.7 16.9 221 8-268 151-385 (417)
20 1s2m_A Putative ATP-dependent 99.9 1.6E-26 5.4E-31 244.0 21.0 221 8-268 139-367 (400)
21 2v1x_A ATP-dependent DNA helic 99.9 4.1E-27 1.4E-31 260.1 16.5 225 7-268 135-376 (591)
22 1yks_A Genome polyprotein [con 99.9 9.9E-27 3.4E-31 248.9 18.8 222 4-264 72-297 (440)
23 2j0s_A ATP-dependent RNA helic 99.9 7.4E-27 2.5E-31 247.4 16.8 222 8-268 155-385 (410)
24 2v6i_A RNA helicase; membrane, 99.9 1.1E-26 3.8E-31 248.0 17.1 219 6-264 68-288 (431)
25 1xti_A Probable ATP-dependent 99.9 7.5E-26 2.6E-30 237.8 22.7 220 9-267 129-358 (391)
26 3rc3_A ATP-dependent RNA helic 99.9 5.9E-27 2E-31 260.8 12.8 293 9-356 224-532 (677)
27 3i5x_A ATP-dependent RNA helic 99.9 5.2E-26 1.8E-30 251.2 18.9 230 8-268 201-451 (563)
28 3fmp_B ATP-dependent RNA helic 99.9 2.6E-27 8.9E-32 256.5 6.7 228 8-267 210-447 (479)
29 2xgj_A ATP-dependent RNA helic 99.9 2.2E-26 7.7E-31 267.6 14.9 237 7-266 167-499 (1010)
30 1oyw_A RECQ helicase, ATP-depe 99.9 4.4E-26 1.5E-30 249.1 16.0 222 8-268 115-345 (523)
31 3eaq_A Heat resistant RNA depe 99.9 1.1E-26 3.8E-31 224.0 9.4 170 117-321 22-211 (212)
32 2wv9_A Flavivirin protease NS2 99.9 1.2E-25 4.2E-30 250.8 19.1 221 5-264 306-531 (673)
33 3sqw_A ATP-dependent RNA helic 99.9 1E-25 3.5E-30 249.7 16.9 230 8-268 150-400 (579)
34 2ykg_A Probable ATP-dependent 99.9 3.1E-26 1.1E-30 259.3 13.0 114 124-268 396-518 (696)
35 1fuu_A Yeast initiation factor 99.9 9.3E-27 3.2E-31 244.8 7.4 222 8-268 138-368 (394)
36 3i32_A Heat resistant RNA depe 99.9 4E-26 1.4E-30 230.9 9.2 191 97-326 3-213 (300)
37 3fho_A ATP-dependent RNA helic 99.9 5.2E-26 1.8E-30 248.0 9.2 227 8-266 235-470 (508)
38 2z0m_A 337AA long hypothetical 99.9 2.8E-25 9.5E-30 228.3 14.1 211 8-264 105-321 (337)
39 1wp9_A ATP-dependent RNA helic 99.9 5.7E-24 1.9E-28 228.6 18.2 112 124-269 359-478 (494)
40 4a2p_A RIG-I, retinoic acid in 99.9 5.8E-24 2E-28 233.8 15.4 120 124-269 388-511 (556)
41 3tbk_A RIG-I helicase domain; 99.9 5.1E-24 1.7E-28 234.0 11.8 119 124-268 387-509 (555)
42 3oiy_A Reverse gyrase helicase 99.9 2.9E-24 9.8E-29 228.1 9.2 207 9-265 118-364 (414)
43 4gl2_A Interferon-induced heli 99.9 1.7E-23 5.8E-28 237.0 8.6 110 126-265 400-517 (699)
44 4a2q_A RIG-I, retinoic acid in 99.9 3.3E-22 1.1E-26 229.5 18.5 119 124-268 629-751 (797)
45 1gm5_A RECG; helicase, replica 99.9 4.1E-23 1.4E-27 233.3 6.4 212 8-264 471-695 (780)
46 4a2w_A RIG-I, retinoic acid in 99.9 1.6E-21 5.6E-26 226.5 18.6 119 124-268 629-751 (936)
47 2eyq_A TRCF, transcription-rep 99.9 3.2E-21 1.1E-25 227.5 19.9 212 8-266 706-922 (1151)
48 4ddu_A Reverse gyrase; topoiso 99.8 3.4E-21 1.2E-25 225.9 8.1 181 9-221 175-388 (1104)
49 1gku_B Reverse gyrase, TOP-RG; 99.8 5.3E-21 1.8E-25 224.3 8.2 179 9-220 156-352 (1054)
50 1tf5_A Preprotein translocase 99.8 4.4E-19 1.5E-23 197.4 19.4 123 107-267 415-546 (844)
51 2rb4_A ATP-dependent RNA helic 99.8 3.2E-19 1.1E-23 166.4 13.2 142 96-268 7-149 (175)
52 2hjv_A ATP-dependent RNA helic 99.8 3E-19 1E-23 164.6 12.6 134 97-268 10-144 (163)
53 2fwr_A DNA repair protein RAD2 99.8 3.8E-20 1.3E-24 199.7 7.7 215 8-270 171-458 (472)
54 1fuk_A Eukaryotic initiation f 99.8 1.9E-19 6.3E-24 166.3 10.3 134 97-268 4-139 (165)
55 2d7d_A Uvrabc system protein B 99.8 6.1E-19 2.1E-23 197.3 15.4 169 63-268 386-558 (661)
56 2oca_A DAR protein, ATP-depend 99.8 2.1E-19 7.3E-24 195.8 10.7 213 7-264 203-453 (510)
57 1t5i_A C_terminal domain of A 99.8 4.7E-19 1.6E-23 164.8 10.4 133 96-266 5-138 (172)
58 1c4o_A DNA nucleotide excision 99.8 1.3E-18 4.5E-23 194.6 15.4 168 63-267 380-551 (664)
59 2p6n_A ATP-dependent RNA helic 99.8 6.4E-19 2.2E-23 166.7 10.3 131 97-266 30-161 (191)
60 2jgn_A DBX, DDX3, ATP-dependen 99.8 8.7E-19 3E-23 165.0 11.1 135 97-268 20-155 (185)
61 3h1t_A Type I site-specific re 99.8 2.3E-18 7.9E-23 191.1 15.5 222 7-256 273-545 (590)
62 2fsf_A Preprotein translocase 99.8 9.2E-18 3.1E-22 186.4 18.5 123 107-267 424-584 (853)
63 1nkt_A Preprotein translocase 99.7 3.8E-17 1.3E-21 181.8 18.4 122 108-267 444-618 (922)
64 2yjt_D ATP-dependent RNA helic 99.6 4.1E-19 1.4E-23 164.8 0.0 118 117-268 21-139 (170)
65 3dmq_A RNA polymerase-associat 99.7 2.2E-16 7.4E-21 183.9 11.7 123 115-268 492-617 (968)
66 3jux_A Protein translocase sub 99.6 2.3E-15 8E-20 164.1 14.0 161 65-267 411-588 (822)
67 1z63_A Helicase of the SNF2/RA 99.6 2.9E-15 9.8E-20 162.7 10.5 115 124-269 339-456 (500)
68 2w00_A HSDR, R.ECOR124I; ATP-b 99.5 1.1E-13 3.8E-18 160.5 18.9 219 7-257 374-695 (1038)
69 1z3i_X Similar to RAD54-like; 99.5 1.6E-13 5.4E-18 153.4 17.5 114 125-269 415-531 (644)
70 3llm_A ATP-dependent RNA helic 99.5 8.1E-14 2.8E-18 136.0 9.4 82 7-90 154-235 (235)
71 3mwy_W Chromo domain-containin 99.4 6.7E-13 2.3E-17 152.0 14.5 116 124-270 570-688 (800)
72 1z5z_A Helicase of the SNF2/RA 99.3 3.4E-12 1.1E-16 127.1 5.6 114 125-269 111-227 (271)
73 1qde_A EIF4A, translation init 98.5 7.6E-08 2.6E-12 92.3 6.4 85 9-95 132-221 (224)
74 3iuy_A Probable ATP-dependent 98.5 9.9E-08 3.4E-12 91.9 6.7 75 8-83 143-221 (228)
75 3ber_A Probable ATP-dependent 98.5 1.2E-07 4.1E-12 92.9 6.6 81 8-89 161-246 (249)
76 2vl7_A XPD; helicase, unknown 98.5 1.1E-07 3.7E-12 103.9 6.1 129 111-262 370-518 (540)
77 3ly5_A ATP-dependent RNA helic 98.5 1.5E-07 5.1E-12 92.9 6.2 77 8-86 176-258 (262)
78 3fe2_A Probable ATP-dependent 98.4 1.6E-07 5.6E-12 91.3 6.3 82 8-91 152-238 (242)
79 2pl3_A Probable ATP-dependent 98.4 2E-07 6.8E-12 90.2 6.7 83 8-92 146-234 (236)
80 3dkp_A Probable ATP-dependent 98.4 5.1E-07 1.8E-11 87.8 9.1 85 8-93 149-243 (245)
81 1q0u_A Bstdead; DEAD protein, 98.4 3.1E-07 1.1E-11 87.8 6.6 76 8-85 126-206 (219)
82 2gxq_A Heat resistant RNA depe 98.4 3.8E-07 1.3E-11 86.1 6.9 78 8-87 120-201 (207)
83 1vec_A ATP-dependent RNA helic 98.4 4.7E-07 1.6E-11 85.5 7.4 74 8-83 122-200 (206)
84 3bor_A Human initiation factor 98.4 3.4E-07 1.2E-11 88.8 6.5 72 9-84 150-228 (237)
85 2oxc_A Probable ATP-dependent 98.3 6.4E-07 2.2E-11 86.4 7.7 74 8-85 142-223 (230)
86 3fmo_B ATP-dependent RNA helic 98.3 3.5E-07 1.2E-11 92.1 5.8 82 8-90 210-297 (300)
87 1t6n_A Probable ATP-dependent 98.3 9.8E-07 3.4E-11 84.2 8.1 76 9-85 135-215 (220)
88 1wrb_A DJVLGB; RNA helicase, D 98.2 2.3E-06 7.9E-11 83.6 6.8 81 8-90 150-239 (253)
89 3b6e_A Interferon-induced heli 98.1 2.9E-06 9.9E-11 80.3 5.5 64 9-72 133-216 (216)
90 2ipc_A Preprotein translocase 97.9 0.00011 3.6E-09 82.5 14.0 77 65-147 380-464 (997)
91 1rif_A DAR protein, DNA helica 97.2 0.00012 4E-09 72.7 3.2 59 7-73 203-262 (282)
92 2fz4_A DNA repair protein RAD2 96.7 0.002 6.9E-08 62.0 6.1 59 8-74 171-229 (237)
93 4a15_A XPD helicase, ATP-depen 96.2 0.01 3.4E-07 65.5 8.7 174 65-262 377-581 (620)
94 3crv_A XPD/RAD3 related DNA he 96.1 0.059 2E-06 58.5 14.2 173 64-262 316-528 (551)
95 3hgt_A HDA1 complex subunit 3; 92.5 0.58 2E-05 46.7 10.1 120 114-270 114-241 (328)
96 3crv_A XPD/RAD3 related DNA he 82.6 0.56 1.9E-05 50.7 2.8 35 8-42 148-184 (551)
97 2ipc_A Preprotein translocase 81.9 0.71 2.4E-05 52.1 3.3 34 8-41 168-212 (997)
98 3im1_A Protein SNU246, PRE-mRN 81.5 13 0.00046 36.8 12.4 36 325-360 1-38 (328)
99 1gm5_A RECG; helicase, replica 79.8 2.1 7.1E-05 48.2 6.2 79 125-215 416-495 (780)
100 3fe2_A Probable ATP-dependent 79.0 4 0.00014 38.4 7.2 75 125-215 101-181 (242)
101 1vec_A ATP-dependent RNA helic 78.2 14 0.00048 33.2 10.6 77 124-215 69-151 (206)
102 2oxc_A Probable ATP-dependent 77.0 13 0.00044 34.5 10.1 76 124-215 90-171 (230)
103 1t6n_A Probable ATP-dependent 76.4 13 0.00043 34.0 9.8 76 126-215 82-163 (220)
104 3ber_A Probable ATP-dependent 75.3 17 0.00058 34.3 10.5 78 122-215 107-191 (249)
105 1qde_A EIF4A, translation init 72.7 16 0.00055 33.4 9.5 75 124-215 80-160 (224)
106 2xgj_A ATP-dependent RNA helic 71.9 16 0.00056 42.3 11.1 60 312-373 817-878 (1010)
107 3bor_A Human initiation factor 69.8 15 0.00052 34.1 8.7 76 125-215 97-178 (237)
108 2eyq_A TRCF, transcription-rep 69.6 4.9 0.00017 47.4 6.1 79 125-215 651-730 (1151)
109 2gxq_A Heat resistant RNA depe 69.2 6.7 0.00023 35.5 5.8 73 125-215 71-149 (207)
110 3iuy_A Probable ATP-dependent 67.9 7.7 0.00026 35.9 6.0 74 125-215 93-172 (228)
111 1wrb_A DJVLGB; RNA helicase, D 67.7 12 0.00041 35.2 7.5 74 126-215 100-179 (253)
112 3oiy_A Reverse gyrase helicase 65.5 5.1 0.00017 41.0 4.6 64 124-200 62-125 (414)
113 3ly5_A ATP-dependent RNA helic 64.2 11 0.00037 35.9 6.4 75 125-215 125-206 (262)
114 4a4z_A Antiviral helicase SKI2 59.2 46 0.0016 38.4 11.5 61 312-374 800-862 (997)
115 2i4i_A ATP-dependent RNA helic 59.0 56 0.0019 32.7 11.2 73 127-215 102-180 (417)
116 2db3_A ATP-dependent RNA helic 56.9 17 0.00057 37.5 6.7 74 126-215 129-208 (434)
117 1q0u_A Bstdead; DEAD protein, 56.6 39 0.0013 30.7 8.6 79 125-215 71-155 (219)
118 2v1x_A ATP-dependent DNA helic 53.7 11 0.00038 40.8 4.8 60 125-200 83-144 (591)
119 2q0z_X Protein Pro2281; SEC63, 53.6 57 0.002 32.3 9.8 53 332-384 14-68 (339)
120 1s2m_A Putative ATP-dependent 52.1 69 0.0024 31.9 10.4 75 125-215 88-168 (400)
121 3l9o_A ATP-dependent RNA helic 51.2 15 0.00053 42.9 5.8 131 314-449 917-1073(1108)
122 1njg_A DNA polymerase III subu 50.0 15 0.00052 33.4 4.6 43 28-72 123-165 (250)
123 1a5t_A Delta prime, HOLB; zinc 49.3 17 0.00057 36.0 5.1 50 19-71 96-146 (334)
124 3te6_A Regulatory protein SIR3 47.9 21 0.00071 35.3 5.4 44 31-75 132-175 (318)
125 2b8t_A Thymidine kinase; deoxy 47.5 44 0.0015 31.1 7.3 57 11-72 69-125 (223)
126 1jr3_A DNA polymerase III subu 46.9 21 0.00073 35.4 5.5 50 18-70 106-156 (373)
127 2pl3_A Probable ATP-dependent 46.9 26 0.00088 32.3 5.7 59 125-200 96-154 (236)
128 1xti_A Probable ATP-dependent 46.7 63 0.0022 31.9 9.1 62 125-200 75-136 (391)
129 2gno_A DNA polymerase III, gam 46.6 21 0.00072 35.0 5.2 49 19-70 70-119 (305)
130 3dkp_A Probable ATP-dependent 45.7 18 0.00062 33.6 4.5 76 125-215 97-180 (245)
131 3tbk_A RIG-I helicase domain; 45.5 26 0.0009 36.7 6.2 59 126-200 52-110 (555)
132 1fuu_A Yeast initiation factor 45.3 48 0.0016 32.8 7.9 74 125-215 88-167 (394)
133 1g5t_A COB(I)alamin adenosyltr 44.9 28 0.00095 31.8 5.3 44 30-76 119-166 (196)
134 4ddu_A Reverse gyrase; topoiso 43.7 16 0.00054 42.8 4.3 78 124-215 119-201 (1104)
135 2j0s_A ATP-dependent RNA helic 43.2 72 0.0025 31.9 8.9 76 124-215 103-184 (410)
136 1jr3_D DNA polymerase III, del 43.1 33 0.0011 33.8 6.2 56 17-74 62-118 (343)
137 4a2p_A RIG-I, retinoic acid in 42.2 35 0.0012 35.9 6.5 74 126-215 55-135 (556)
138 3fmo_B ATP-dependent RNA helic 41.1 71 0.0024 30.8 8.1 73 125-215 161-240 (300)
139 3eiq_A Eukaryotic initiation f 39.6 1.4E+02 0.0047 29.6 10.4 76 125-215 107-188 (414)
140 2orw_A Thymidine kinase; TMTK, 38.9 27 0.00092 31.3 4.3 39 31-74 76-114 (184)
141 1hv8_A Putative ATP-dependent 38.6 74 0.0025 30.9 8.0 60 124-200 72-131 (367)
142 4a2q_A RIG-I, retinoic acid in 38.0 47 0.0016 37.2 7.0 59 126-200 296-354 (797)
143 1oyw_A RECQ helicase, ATP-depe 37.7 22 0.00076 37.7 4.0 59 126-200 65-123 (523)
144 2z0m_A 337AA long hypothetical 34.5 65 0.0022 31.0 6.7 58 126-200 56-113 (337)
145 1sxj_E Activator 1 40 kDa subu 34.3 45 0.0015 32.7 5.5 43 29-73 132-174 (354)
146 3n70_A Transport activator; si 33.2 41 0.0014 28.4 4.3 41 33-76 78-118 (145)
147 1gku_B Reverse gyrase, TOP-RG; 32.1 46 0.0016 38.7 5.7 62 125-200 98-163 (1054)
148 4a15_A XPD helicase, ATP-depen 31.3 14 0.00049 40.2 1.2 34 8-41 175-214 (620)
149 3lua_A Response regulator rece 30.9 1.6E+02 0.0056 23.6 7.8 50 30-82 49-100 (140)
150 1wp9_A ATP-dependent RNA helic 29.9 69 0.0023 32.4 6.2 75 124-215 50-130 (494)
151 3u61_B DNA polymerase accessor 29.6 68 0.0023 31.1 5.8 44 25-71 99-144 (324)
152 2o0j_A Terminase, DNA packagin 28.3 56 0.0019 33.1 5.0 50 31-82 273-323 (385)
153 2qxy_A Response regulator; reg 27.9 2.3E+02 0.008 22.6 8.6 64 10-82 30-94 (142)
154 1tf5_A Preprotein translocase 27.5 1.3E+02 0.0045 33.8 8.1 58 125-200 123-180 (844)
155 4e7p_A Response regulator; DNA 27.4 1.6E+02 0.0053 24.2 7.2 48 31-82 66-113 (150)
156 2chg_A Replication factor C sm 27.2 65 0.0022 28.5 4.9 40 30-72 101-141 (226)
157 2fsf_A Preprotein translocase 27.1 1.2E+02 0.0041 34.0 7.7 58 125-200 114-171 (853)
158 1iqp_A RFCS; clamp loader, ext 27.0 89 0.0031 29.9 6.2 38 30-70 109-147 (327)
159 3eod_A Protein HNR; response r 26.2 1.9E+02 0.0067 22.7 7.4 48 31-82 51-98 (130)
160 4a2w_A RIG-I, retinoic acid in 25.8 63 0.0022 37.0 5.4 59 126-200 296-354 (936)
161 1sxj_A Activator 1 95 kDa subu 24.9 56 0.0019 34.4 4.4 44 30-74 147-190 (516)
162 2qen_A Walker-type ATPase; unk 24.6 58 0.002 31.6 4.3 40 33-72 130-173 (350)
163 3co5_A Putative two-component 24.0 95 0.0032 26.0 5.0 38 32-71 76-114 (143)
164 1xx6_A Thymidine kinase; NESG, 23.9 75 0.0026 28.6 4.5 35 31-70 81-115 (191)
165 2j9r_A Thymidine kinase; TK1, 23.2 73 0.0025 29.4 4.3 34 31-69 101-134 (214)
166 1w36_D RECD, exodeoxyribonucle 23.2 53 0.0018 35.5 3.9 37 31-72 262-298 (608)
167 4dad_A Putative pilus assembly 23.1 2.9E+02 0.01 22.2 10.2 50 30-83 66-115 (146)
168 2ykg_A Probable ATP-dependent 22.5 92 0.0032 33.8 5.8 59 126-200 61-119 (696)
169 3b6e_A Interferon-induced heli 22.4 1.1E+02 0.0038 27.0 5.5 42 125-172 81-123 (216)
170 2kjq_A DNAA-related protein; s 21.8 92 0.0031 26.5 4.5 31 29-59 81-112 (149)
171 2w58_A DNAI, primosome compone 21.5 36 0.0012 30.4 1.8 71 9-82 83-167 (202)
172 2qr3_A Two-component system re 21.4 1.7E+02 0.006 23.3 6.2 49 31-82 47-99 (140)
173 3kto_A Response regulator rece 21.2 3.1E+02 0.011 21.7 9.3 49 31-82 50-99 (136)
174 3hzh_A Chemotaxis response reg 21.2 1.1E+02 0.0039 25.5 5.0 48 31-82 83-130 (157)
175 1q02_A Sequestosome 1; helical 20.6 43 0.0015 23.3 1.6 25 312-336 8-32 (52)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.9e-101 Score=877.13 Aligned_cols=557 Identities=65% Similarity=1.055 Sum_probs=516.8
Q ss_pred cCCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhhCCCC
Q 008209 7 VLLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAP 86 (574)
Q Consensus 7 ~~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f~~~~ 86 (574)
..++|+|+|+|+|++.+..++.+.++++|||||+|+|+++.|.++++++.+...+++.|+|+||||++.+.+++||++++
T Consensus 184 ~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~~ 263 (773)
T 2xau_A 184 NKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAP 263 (773)
T ss_dssp TTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSCC
T ss_pred CCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCCC
Confidence 45889999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred eEEeCCeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhc--CCCCCCeEEEE
Q 008209 87 LMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNM--GDQVGPVKVVP 164 (574)
Q Consensus 87 ~i~~~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~--~~~~~~~~v~~ 164 (574)
++.++|+.+||+++|.+.+..++....+..+.+++...++|++||||||+++|+.+++.|.+.+..+ .....++.+.+
T Consensus 264 vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~ 343 (773)
T 2xau_A 264 LLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYP 343 (773)
T ss_dssp EEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_pred cccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEE
Confidence 9999999999999999998889998888899998887789999999999999999999998643322 11235788999
Q ss_pred cCCCCCHHHHhhhcCCCC-----CCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeec
Q 008209 165 LYSTLPPAMQQKIFEPAP-----PPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPI 239 (574)
Q Consensus 165 lhs~l~~~~q~~v~~~~~-----~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~i 239 (574)
+||+|++++|.++++.++ +|. ++||||||+||+|||||+|++|||+|+.|++.||+.+|++.|.+.|+
T Consensus 344 lhg~l~~~eR~~v~~~f~~~~~~~g~-------~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~ 416 (773)
T 2xau_A 344 LYGSLPPHQQQRIFEPAPESHNGRPG-------RKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPI 416 (773)
T ss_dssp ECTTCCHHHHGGGGSCCCCCSSSSCC-------EEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEEC
T ss_pred eCCCCCHHHHHHHHhhcccccCCCCc-------eEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccC
Confidence 999999999999999998 777 99999999999999999999999999999999999999999999999
Q ss_pred cHhhHHHhcccCCCCCCCeEEeeccccccccccCCCCcchhccCCchhhHHHHhhcCCCCccccCCCCCCcHHHHHHHHH
Q 008209 240 SKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALE 319 (574)
Q Consensus 240 s~~~~~QR~GRaGR~~~G~~~rl~t~~~~~~~l~~~~~pei~~~~l~~~~L~l~~~~~~~~~~~~~l~~P~~~~l~~al~ 319 (574)
|+++|.||+|||||.++|.||+||++.++...+.++..|||++.+|.+++|+++.+|+.++..|+|++||+.+++..|++
T Consensus 417 S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~~~pEi~r~~L~~~~L~l~~~gi~~~~~f~~~~~p~~~~i~~a~~ 496 (773)
T 2xau_A 417 SKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALE 496 (773)
T ss_dssp CHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSSCCCGGGGSCCHHHHHHHHHTTCCCGGGCCCSSCCCHHHHHHHHH
T ss_pred CHHHHHhhccccCCCCCCEEEEEecHHHhcccccccCCCccccCcHHHHHHHHHHcCCCChhhccccCCCcHHHHHHHHH
Confidence 99999999999999999999999999999667999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCccCCCCcChhhhhhccCCCCHHHHHHHHhccCCCCchhhHhHHhhccCCCcccCChhHHHHHHHHHHhhCCCC
Q 008209 320 VLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAADEAKARFGHID 399 (574)
Q Consensus 320 ~L~~lgald~~~~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~~~~~~i~a~ls~~~~f~~~~~~~~~~~~~~~~~~~~~ 399 (574)
.|..+||||++|++|++|+.|+.||++|++|+||+.|..++|++++++|+|+|+++++|+.|.+.+++++.++..|.+..
T Consensus 497 ~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~f~~~~ 576 (773)
T 2xau_A 497 ELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPD 576 (773)
T ss_dssp HHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTSCCCBCCCTTCHHHHHHHHHTTCCTT
T ss_pred HHHHcCCcccCCCcChhhhhhccccCCHHHHHHHHhhcccCchhHHHHHHHhcccCCcccCChHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhCC---CC-chhHhhhcCCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCchhHHHHHHHHHhcc
Q 008209 400 GDHLTLLNVYHAYKQNN---ED-PSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSNDFNSRDYYVNIRKAMLAGY 475 (574)
Q Consensus 400 sD~l~~l~~~~~~~~~~---~~-~~~c~~~~l~~~~l~~~~~ir~qL~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~g~ 475 (574)
|||++++++|++|.... .. ..||++||||+++|+++.++++||.+++++.+++..+...+...++..|++||++||
T Consensus 577 ~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~ 656 (773)
T 2xau_A 577 GDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALASGF 656 (773)
T ss_dssp BHHHHHHHHHHHHTSHHHHHHCHHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSTTHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhccccchHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCchhhHHHHHHHHHHhC
Confidence 99999999999997543 34 689999999999999999999999999999988765543333456688999999999
Q ss_pred ccceeeecCCCc-EEEeecCeEEEEcCCCCCCCCCcEEEEEEecccchhhcccccccCHHHHHhHcCcccccccCCchhH
Q 008209 476 FMQVAHLERTGQ-YLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSRNFIRTVTDVRGEWLIDIAPHYYDLSNFPQCEA 554 (574)
Q Consensus 476 ~~niA~~~~~~~-y~~~~~~~~~~ihpsS~l~~~~~~ivy~e~~~t~k~~i~~vt~I~~~wl~~~~~~~~~~~~~~~~~~ 554 (574)
|+|||++.+.|. |.++.+|+.++|||+|+|...|+||||+|++.|++.||+.||+|+|+||.+++|++|...+++.++.
T Consensus 657 ~~~~a~~~~~~~~y~~~~~~~~~~ihp~s~l~~~~~~~v~~e~~~t~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 736 (773)
T 2xau_A 657 FMQVAKKRSGAKGYITVKDNQDVLIHPSTVLGHDAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAYYDLSNFQKGDV 736 (773)
T ss_dssp TTSEEEECCC--CEEETTTCCEEEECTTCCCCTTCSEEEEEEEEESSSEEEEEEEECCHHHHHHHCTTTSCGGGCCSSHH
T ss_pred hHhheeeccCCCcceEeeCCCEEEECCCcccCCCCCEEEEEEeeccchhheeecccCCHHHHHHHHHHheeeccCCchhH
Confidence 999999998775 9989999999999999998679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 008209 555 KRVLERLYRKREKERE 570 (574)
Q Consensus 555 ~~~~~~~~~~~~~~~~ 570 (574)
|+.++.+.++...+.+
T Consensus 737 ~~~~~~~~~~~~~~~~ 752 (773)
T 2xau_A 737 KLSLERIKEKVDRLNE 752 (773)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhhhhhh
Confidence 9999988888765543
No 2
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.3e-55 Score=432.84 Aligned_cols=248 Identities=42% Similarity=0.778 Sum_probs=223.8
Q ss_pred ccccCC-CCCCcHHHHHHHHHHHHHcCCccCCCCcChhhhhhccCCCCHHHHHHHHhccCCCCchhhHhHHhhccCCCcc
Q 008209 300 LVHFDF-MDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCF 378 (574)
Q Consensus 300 ~~~~~~-l~~P~~~~l~~al~~L~~lgald~~~~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~~~~~~i~a~ls~~~~f 378 (574)
...|+| +|||+.+++.+|++.|..+||||++|+||++|+.|++||+||++||||+.|..++|.+++++|||+|+++++|
T Consensus 5 ~~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~~~f 84 (270)
T 3i4u_A 5 GPEFELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVF 84 (270)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCCB
T ss_pred hhccccCCCCcCHHHHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHHHHHCCCccc
Confidence 456788 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhCCCCchhHhhhcCCHHHHHHHHHHHHHHHHHHHHcCCcccCCCC
Q 008209 379 VRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSNDF 458 (574)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~sD~l~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~ir~qL~~~l~~~~~~~~~~~~ 458 (574)
++|.+++++++.++..|.+.+|||++++|+|++|.+++...+||++|+||+++|+++.++|+||.+++++.+++..+..
T Consensus 85 ~~p~~~~~~a~~~~~~f~~~~sD~ltlLn~~~~~~~~~~~~~wC~~~fL~~~~l~~~~~ir~QL~~~l~~~~~~~~s~~- 163 (270)
T 3i4u_A 85 YRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCG- 163 (270)
T ss_dssp CCCGGGHHHHHHHHHTTCBTTBHHHHHHHHHHHHHHTTTCHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCT-
T ss_pred cCCchhHHHHHHHHHHccCCCChHHHHHHHHHHHHHcCchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCcCCCc-
Confidence 9999999999999999999999999999999999987777899999999999999999999999999999887654321
Q ss_pred CCchhHHHHHHHHHhccccceeeecCCCcEEEeecCeEEEEcCCCCCC-CCCcEEEEEEecccchhhcccccccCHHHHH
Q 008209 459 NSRDYYVNIRKAMLAGYFMQVAHLERTGQYLTVKDNQVVHLHPSNCLD-HKPEWVIYNEYVLTSRNFIRTVTDVRGEWLI 537 (574)
Q Consensus 459 ~~~~~~~~i~~~l~~g~~~niA~~~~~~~y~~~~~~~~~~ihpsS~l~-~~~~~ivy~e~~~t~k~~i~~vt~I~~~wl~ 537 (574)
.+.+.|++||++|||+|||++++++.|+++.+|+.++|||+|+|+ .+|+||||+|++.|+|.|||+||+|+|+||.
T Consensus 164 ---~~~~~i~~~L~aG~~~nvA~~~~~~~Y~~~~~~~~v~iHPsS~L~~~~p~wvvy~Elv~Tsk~y~r~vt~I~p~wL~ 240 (270)
T 3i4u_A 164 ---KSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLV 240 (270)
T ss_dssp ---TCTHHHHHHHHHHHGGGEEEECSSSSEEETTTCCEEEECTTSTTTTSCCSEEEEEEEEESSSEEEEEEEECCHHHHH
T ss_pred ---chHHHHHHHHHHHhHHHHheeCCCCceEEccCCCEEEECchhhhcCCCCCEEEEEehhhhhHhHHHhccccCHHHHH
Confidence 345789999999999999999988889999999999999999997 5689999999999999999999999999999
Q ss_pred hHcCcccccccCCc
Q 008209 538 DIAPHYYDLSNFPQ 551 (574)
Q Consensus 538 ~~~~~~~~~~~~~~ 551 (574)
+++|++|+..+...
T Consensus 241 ~~ap~~~~~~~~~~ 254 (270)
T 3i4u_A 241 EFAPAFFKVLEVDL 254 (270)
T ss_dssp HHCTTTEECC----
T ss_pred HHhHHHhccccccc
Confidence 99999998876643
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.9e-45 Score=417.14 Aligned_cols=412 Identities=15% Similarity=0.128 Sum_probs=311.1
Q ss_pred CCCeEEEchHHHHHHHhcCCC-CCCccEEEEecCCC-----CCcchHHHHHHHHHHHhhCCCccEEEEccCCC-HHHHHh
Q 008209 8 LLGGRYLTDGMLLREAMTDPL-LERYKVIVLDEAHE-----RTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 80 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~~-L~~~~~vIiDE~He-----R~~~~d~ll~~lk~~~~~~~~~klvlmSATl~-~~~~~~ 80 (574)
.++|+|+|||+|.+.+.+++. ++++++|||||+|+ |+..++.++..++. .++++|+|+||||++ .+.+++
T Consensus 114 ~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~---~~~~~~ii~lSATl~n~~~~~~ 190 (702)
T 2p6r_A 114 DCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRR---MNKALRVIGLSATAPNVTEIAE 190 (702)
T ss_dssp TCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHH---HCTTCEEEEEECCCTTHHHHHH
T ss_pred CCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHh---cCcCceEEEECCCcCCHHHHHH
Confidence 589999999999999998876 89999999999996 88889988888775 467899999999995 999999
Q ss_pred hhCCCCeEEeCCeeeceeEEeecCCchhHHH---------HHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHh
Q 008209 81 YFYGAPLMKVPGRLHPVEIFYTQEPERDYLE---------AAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEIT 151 (574)
Q Consensus 81 ~f~~~~~i~~~gr~~~v~~~y~~~~~~~~~~---------~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~ 151 (574)
|++ ++++..+++++|++.++...+...+.+ .....+.+.+ .+++++|||+||+++++.+++.|.+.+.
T Consensus 191 ~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~ 267 (702)
T 2p6r_A 191 WLD-ADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECV--AENGGVLVFESTRRGAEKTAVKLSAITA 267 (702)
T ss_dssp HTT-CEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHH--HTTCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred HhC-CCcccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHH--hcCCCEEEEcCCHHHHHHHHHHHHHHHH
Confidence 996 788899999999887654322110000 0222333333 2689999999999999999999987543
Q ss_pred hcCCCC---------------------CCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCC
Q 008209 152 NMGDQV---------------------GPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDG 210 (574)
Q Consensus 152 ~~~~~~---------------------~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~ 210 (574)
...... ....+.++||+|++++|..+++.|++|. ++|||||+++|+|||+|+
T Consensus 268 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~-------~~vlvaT~~l~~Gidip~ 340 (702)
T 2p6r_A 268 KYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGN-------IKVVVATPTLAAGVNLPA 340 (702)
T ss_dssp TTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTS-------CCEEEECSTTTSSSCCCB
T ss_pred hhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCC-------CeEEEECcHHhccCCCCc
Confidence 210000 0124788999999999999999999998 999999999999999999
Q ss_pred eEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC---CCeEEeeccccccccccC--CCCcchhccCCc
Q 008209 211 IVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ---PGKCFRLYTEKSFNNDLQ--PQTYPEILRSNL 285 (574)
Q Consensus 211 v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~---~G~~~rl~t~~~~~~~l~--~~~~pei~~~~l 285 (574)
+++|||+ ...|| +. ..|+|.++|.||+|||||.+ +|.||+++++.+++..+. ....||+.+++|
T Consensus 341 ~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l 409 (702)
T 2p6r_A 341 RRVIVRS----LYRFD---GY----SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKL 409 (702)
T ss_dssp SEEEECC----SEEES---SS----EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCC
T ss_pred eEEEEcC----ceeeC---CC----CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCceeec
Confidence 9999986 56787 21 56999999999999999999 899999999887632221 245799999988
Q ss_pred hh------hHHHHhhcCCC-C---cccc---CCC----CCCcHHHHHHHHHHHHHcCCccCC--CCcChhhhhhccCCCC
Q 008209 286 AN------TVLTLKKLGID-D---LVHF---DFM----DPPAPETLMRALEVLNYLGALDDD--GNLTEMGEKMSEFPLD 346 (574)
Q Consensus 286 ~~------~~L~l~~~~~~-~---~~~~---~~l----~~P~~~~l~~al~~L~~lgald~~--~~lT~lG~~~~~lpl~ 346 (574)
.. .++.+..+|.. + +..+ .|+ ++|+.+.+..|++.|..+|+|+.+ +.+|++|+.|+.+|++
T Consensus 410 ~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~~~ 489 (702)
T 2p6r_A 410 GVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLYID 489 (702)
T ss_dssp CSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTTCC
T ss_pred CcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHCcCeeECCeeccChHHHHHHHHhCC
Confidence 76 56677777732 2 2221 333 368889999999999999999877 7899999999999999
Q ss_pred HHHHHHHHhccCC--CCchhhHhHHhhccC-CCcccCChhHHHHHHHH-H--Hhh-CCC--CC-------cHHHHHHHHH
Q 008209 347 PQMSKMLVESPKY--NCSNEILSISAMLSV-PNCFVRPREAQKAADEA-K--ARF-GHI--DG-------DHLTLLNVYH 410 (574)
Q Consensus 347 p~~~~~ll~~~~~--~c~~~~~~i~a~ls~-~~~f~~~~~~~~~~~~~-~--~~~-~~~--~s-------D~l~~l~~~~ 410 (574)
|+++++++.+... .|..+++.|+|+.+. .++++++.+ ..-.+.. + ..+ ..+ .. .++-..-+++
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lL~ 568 (702)
T 2p6r_A 490 PLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTD-SWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLK 568 (702)
T ss_dssp HHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTT-HHHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCCCch-HHHHHHHHhccccccCCcchhhhhhhhhhhhHHHHHHHH
Confidence 9999999999888 899999999888776 678888766 2211111 1 122 111 11 2333445567
Q ss_pred HHHhCCCCchhHhhhcCCHHHHHHHHHHHHHHHH
Q 008209 411 AYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVR 444 (574)
Q Consensus 411 ~~~~~~~~~~~c~~~~l~~~~l~~~~~ir~qL~~ 444 (574)
+|.+...-...|.++++...-++.+.+....|.+
T Consensus 569 ~~~~~~~l~~i~~~~~~~~gdl~~i~~~a~~l~~ 602 (702)
T 2p6r_A 569 DWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSN 602 (702)
T ss_dssp HHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCChHHHHHHhCCcHHhHHHHHHHHHHHHH
Confidence 7876544456788888866666555444444333
No 4
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.8e-45 Score=418.36 Aligned_cols=421 Identities=16% Similarity=0.149 Sum_probs=296.2
Q ss_pred CCCeEEEchHHHHHHHhcCCC-CCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCC-CHHHHHhhhCCC
Q 008209 8 LLGGRYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQGYFYGA 85 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~~-L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl-~~~~~~~~f~~~ 85 (574)
.++|+|+|||+|.+.+.+++. ++++++|||||+|+.+ + +..-..++.++.+.+++|+|+||||+ +.+.+++||+ +
T Consensus 121 ~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~-~-~~~~~~l~~i~~~~~~~~ii~lSATl~n~~~~~~~l~-~ 197 (715)
T 2va8_A 121 NYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN-D-PERGPVVESVTIRAKRRNLLALSATISNYKQIAKWLG-A 197 (715)
T ss_dssp GCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG-C-TTTHHHHHHHHHHHHTSEEEEEESCCTTHHHHHHHHT-C
T ss_pred CCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcC-C-cccchHHHHHHHhcccCcEEEEcCCCCCHHHHHHHhC-C
Confidence 589999999999999998886 9999999999999743 1 11122233333322389999999999 4999999995 7
Q ss_pred CeEEeCCeeeceeEEeecCC--------------chhH--HHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHH
Q 008209 86 PLMKVPGRLHPVEIFYTQEP--------------ERDY--LEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKE 149 (574)
Q Consensus 86 ~~i~~~gr~~~v~~~y~~~~--------------~~~~--~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~ 149 (574)
+++..++|++|+..++.... ...+ .......+.+.+ .+++++|||+||+++++.+++.|.+.
T Consensus 198 ~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~~~~~~~a~~L~~~ 275 (715)
T 2va8_A 198 EPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSL--SKNGQVLVFRNSRKMAESTALKIANY 275 (715)
T ss_dssp EEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHT
T ss_pred CccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHH--hcCCCEEEEECCHHHHHHHHHHHHHH
Confidence 78888999988775442111 0000 122334444444 36799999999999999999999864
Q ss_pred Hhh-----------------cCCC----------CCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccc
Q 008209 150 ITN-----------------MGDQ----------VGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIA 202 (574)
Q Consensus 150 ~~~-----------------~~~~----------~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ia 202 (574)
+.. +... .....+.++||+|+.++|..+++.|++|. ++||||||++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~-------~~vlvaT~~l 348 (715)
T 2va8_A 276 MNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRK-------IKVIVATPTL 348 (715)
T ss_dssp TTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTC-------SCEEEECGGG
T ss_pred HhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCC-------CeEEEEChHH
Confidence 311 0000 00124899999999999999999999998 9999999999
Q ss_pred cccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC---CCeEEeeccccc-ccccc--CCCC
Q 008209 203 ETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ---PGKCFRLYTEKS-FNNDL--QPQT 276 (574)
Q Consensus 203 e~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~---~G~~~rl~t~~~-~~~~l--~~~~ 276 (574)
|+|||+|++++|||+ ...||++++.. ..|+|.++|.||+|||||.+ +|.||+++++.. +...+ ....
T Consensus 349 ~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~ 421 (715)
T 2va8_A 349 AAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLS 421 (715)
T ss_dssp GGSSCCCBSEEEECC----C-----------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSS
T ss_pred hcccCCCceEEEEeC----CeeccccCCCC---CCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcC
Confidence 999999999999987 46788766553 67999999999999999999 899999998765 21111 1245
Q ss_pred cchhccCCchh------hHHHHhhcCCC----Ccccc---CCCC-CCcHHHHHHHHHHHHHcCCccCCC---CcChhhhh
Q 008209 277 YPEILRSNLAN------TVLTLKKLGID----DLVHF---DFMD-PPAPETLMRALEVLNYLGALDDDG---NLTEMGEK 339 (574)
Q Consensus 277 ~pei~~~~l~~------~~L~l~~~~~~----~~~~~---~~l~-~P~~~~l~~al~~L~~lgald~~~---~lT~lG~~ 339 (574)
.||+.++++.. .++.++.+|.. ++..| .|+. +|+...++.|++.|..+|+|+.++ .+|++|+.
T Consensus 422 ~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~~t~lG~~ 501 (715)
T 2va8_A 422 DVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDVYFDRAIRWLLEHSFIKEEGNTFALTNFGKR 501 (715)
T ss_dssp CCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTSEEECSSEEEECHHHHH
T ss_pred CCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhcchHHHHHHHHHHHHCcCEeecCCeEeeChHHHH
Confidence 78999998876 67777777732 22222 4443 455677999999999999998764 79999999
Q ss_pred hccCCCCHHHHHHHHhccCC---CCchhhHhHHhhccC-CCcccCChhHHHHHHHHHH---h-hCC-CCC--------cH
Q 008209 340 MSEFPLDPQMSKMLVESPKY---NCSNEILSISAMLSV-PNCFVRPREAQKAADEAKA---R-FGH-IDG--------DH 402 (574)
Q Consensus 340 ~~~lpl~p~~~~~ll~~~~~---~c~~~~~~i~a~ls~-~~~f~~~~~~~~~~~~~~~---~-~~~-~~s--------D~ 402 (574)
|+++|++|+++++++.+... .|..+++.|+|+.+. .++|+++.+...-.+.... . +.. ... .+
T Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (715)
T 2va8_A 502 VADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEELIELLEDLDCELLIEEPYEEDEYSLYINA 581 (715)
T ss_dssp HHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCCHHHHHHHHHHHTTCSSCCSSCCCSSHHHHHHHHHH
T ss_pred HHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhhcCcccccCccChHHHHHHHHHHHhcchhhcccccccccchhhhHHH
Confidence 99999999999999998776 789999998888764 7888876543322111110 0 110 001 12
Q ss_pred HHHHHHHHHHHhCCCCchhHhhhcCCHHHHHHHHHHHHHHHHHHH
Q 008209 403 LTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMA 447 (574)
Q Consensus 403 l~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~ir~qL~~~l~ 447 (574)
+-..-++++|.+......+|+++++....+..+.+....|.+.+.
T Consensus 582 ~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a~~ 626 (715)
T 2va8_A 582 LKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETMDWLTYSAY 626 (715)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCCChhhHHHHHHHHHHHHHHHH
Confidence 333444577876555567999999988777766655555554443
No 5
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=2.1e-42 Score=393.20 Aligned_cols=439 Identities=15% Similarity=0.105 Sum_probs=306.8
Q ss_pred CCCeEEEchHHHHHHHhcCCC-CCCccEEEEecCC-----CCCcchHHHHHHHHHHHhhCCCccEEEEccCC-CHHHHHh
Q 008209 8 LLGGRYLTDGMLLREAMTDPL-LERYKVIVLDEAH-----ERTLATDVLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQG 80 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~~-L~~~~~vIiDE~H-----eR~~~~d~ll~~lk~~~~~~~~~klvlmSATl-~~~~~~~ 80 (574)
.++|+|+|||+|.+.+.+++. ++++++|||||+| +|+..++.++..++ +++|+|+||||+ +.+.+++
T Consensus 114 ~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~------~~~~ii~lSATl~n~~~~~~ 187 (720)
T 2zj8_A 114 KYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHML------GKAQIIGLSATIGNPEELAE 187 (720)
T ss_dssp GCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB------TTBEEEEEECCCSCHHHHHH
T ss_pred CCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhh------cCCeEEEEcCCcCCHHHHHH
Confidence 589999999999999988775 8999999999999 88888888887766 279999999999 7899999
Q ss_pred hhCCCCeEEeCCeeeceeEEeecCCchhH-------HHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhc
Q 008209 81 YFYGAPLMKVPGRLHPVEIFYTQEPERDY-------LEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNM 153 (574)
Q Consensus 81 ~f~~~~~i~~~gr~~~v~~~y~~~~~~~~-------~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~ 153 (574)
||+ ++.+..++|++|+...+...+...+ .......+.+.+ .+++++|||++|+++++.++..|.+.....
T Consensus 188 ~l~-~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~ 264 (720)
T 2zj8_A 188 WLN-AELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAI--RKKKGALIFVNMRRKAERVALELSKKVKSL 264 (720)
T ss_dssp HTT-EEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHH--HTTCCEEEECSCHHHHHHHHHHHHHHHGGG
T ss_pred HhC-CcccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHH--hCCCCEEEEecCHHHHHHHHHHHHHHHHHh
Confidence 995 6677888888887765432111000 011122333333 257999999999999999999998753221
Q ss_pred CC------------C------------CCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCC
Q 008209 154 GD------------Q------------VGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTID 209 (574)
Q Consensus 154 ~~------------~------------~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip 209 (574)
.. . .....+.++||+|++++|..+++.|++|. ++|||||+++|+|||+|
T Consensus 265 ~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~-------~~vlvaT~~l~~Gvdip 337 (720)
T 2zj8_A 265 LTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGI-------IKAVVATPTLSAGINTP 337 (720)
T ss_dssp SCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTS-------SCEEEECSTTGGGCCCC
T ss_pred cChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCC-------CeEEEECcHhhccCCCC
Confidence 00 0 00124899999999999999999999998 99999999999999999
Q ss_pred CeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC---CCeEEeecccccccc---ccCCCCcchhccC
Q 008209 210 GIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ---PGKCFRLYTEKSFNN---DLQPQTYPEILRS 283 (574)
Q Consensus 210 ~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~---~G~~~rl~t~~~~~~---~l~~~~~pei~~~ 283 (574)
++++||+.+ ..|| ..| ..|.|.++|.||+|||||.+ +|.||.++++...+. .+....++++...
T Consensus 338 ~~~~VI~~~----~~yd-~~g-----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~ 407 (720)
T 2zj8_A 338 AFRVIIRDI----WRYS-DFG-----MERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQ 407 (720)
T ss_dssp BSEEEECCS----EECC-SSS-----CEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCC
T ss_pred ceEEEEcCC----eeec-CCC-----CccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcEee
Confidence 999999865 4676 223 25999999999999999998 799999999876422 2333333333322
Q ss_pred -----CchhhHHHHhhcCCC----Cccc---cCCC------CCCcHHHHHHHHHHHHHcCCcc-CCC---CcChhhhhhc
Q 008209 284 -----NLANTVLTLKKLGID----DLVH---FDFM------DPPAPETLMRALEVLNYLGALD-DDG---NLTEMGEKMS 341 (574)
Q Consensus 284 -----~l~~~~L~l~~~~~~----~~~~---~~~l------~~P~~~~l~~al~~L~~lgald-~~~---~lT~lG~~~~ 341 (574)
.|...++.....|.. ++.. +.|+ ++|..+.+..+++.|...|+|+ .++ .+|++|+.|+
T Consensus 408 l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~~ 487 (720)
T 2zj8_A 408 LSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEISLEDKIRPLSLGIRTA 487 (720)
T ss_dssp TTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHH
T ss_pred cCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhccchHHHHHHHHHHHHHHHHCCCeeECCCCcEeeChHHHHHH
Confidence 244455566555532 1211 2332 3444578999999999999998 665 6999999999
Q ss_pred cCCCCHHHHHHHHhccCC----CCchhhHhHHhhccC-CCcccCChhHHHHHHHHHH---hh-C---CCC--C-------
Q 008209 342 EFPLDPQMSKMLVESPKY----NCSNEILSISAMLSV-PNCFVRPREAQKAADEAKA---RF-G---HID--G------- 400 (574)
Q Consensus 342 ~lpl~p~~~~~ll~~~~~----~c~~~~~~i~a~ls~-~~~f~~~~~~~~~~~~~~~---~~-~---~~~--s------- 400 (574)
++|++|..+++++.+... .|..+++.|+|++++ .++|+++.+...-.+.... .. . -.. .
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 567 (720)
T 2zj8_A 488 KLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFKDRLYFDDPYISGYDPYLERKF 567 (720)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCHHHHHHHHHHHHHHGGGCSSCCTTSSCCCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccCccccccccCHHHHHHHHHHHHhccccccccccccccccchhhhhH
Confidence 999999999999998776 899999999999886 7888887654332222111 01 0 111 1
Q ss_pred -cHHHHHHHHHHHHhCCCCchhHhhhcCCHHHHHHH----HHHHHHHHHHHHHcCCcccCCCCCCchhHHHHHHHHHhcc
Q 008209 401 -DHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSA----DNVRQQLVRIMARFNLKLCSNDFNSRDYYVNIRKAMLAGY 475 (574)
Q Consensus 401 -D~l~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~----~~ir~qL~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~g~ 475 (574)
.++-..-+++.|.+.......+.++++...-++.+ ..+.+.+.+++...|.... ......+.+++..|.
T Consensus 568 ~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gdl~~~~~~a~~l~~a~~~i~~~~g~~~~------~~~l~~l~~rl~~gv 641 (720)
T 2zj8_A 568 FRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVYSLKEIAKVLGAYEI------VDYLETLRVRVKYGI 641 (720)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGG------HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHhCCChHhHHHHHHHHHHHHHHHHHHHHHcCcHHH------HHHHHHHHHHHHcCC
Confidence 12223334567765443345677777765555444 4444444455554443210 122234667777775
Q ss_pred ccc
Q 008209 476 FMQ 478 (574)
Q Consensus 476 ~~n 478 (574)
.+.
T Consensus 642 ~~e 644 (720)
T 2zj8_A 642 REE 644 (720)
T ss_dssp CGG
T ss_pred Ccc
Confidence 543
No 6
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.97 E-value=2.4e-30 Score=313.38 Aligned_cols=360 Identities=19% Similarity=0.209 Sum_probs=246.5
Q ss_pred CCCeEEEchHHHHHHHhcC----CCCCCccEEEEecCC----CCCcchHHHHHHHHHHHh-hCCCccEEEEccCC-CHHH
Q 008209 8 LLGGRYLTDGMLLREAMTD----PLLERYKVIVLDEAH----ERTLATDVLFGLLKEVLK-NRPDLKLVVMSATL-EAEK 77 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~----~~L~~~~~vIiDE~H----eR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl-~~~~ 77 (574)
.++|+|+||+.+ +.+.+. ..++++++|||||+| +||...+.+++.+++... ..+++|+|+||||+ |.+.
T Consensus 181 ~~~IlVtTpEkl-d~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~d 259 (1724)
T 4f92_B 181 ATQIIVCTPEKW-DIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYED 259 (1724)
T ss_dssp GCSEEEECHHHH-HHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTHHH
T ss_pred CCCEEEECHHHH-HHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCHHH
Confidence 478999999997 444432 248899999999999 899999998887766544 56789999999999 8999
Q ss_pred HHhhhCCCC---eEEeCC--eeeceeEEeecCCchhHH--HHHHH-HHHHH-HhcCCCCCEEEEcCCHHHHHHHHHHHHH
Q 008209 78 FQGYFYGAP---LMKVPG--RLHPVEIFYTQEPERDYL--EAAIR-TVVQI-HMCEPSGDILVFLTGEEEIEDACRKITK 148 (574)
Q Consensus 78 ~~~~f~~~~---~i~~~g--r~~~v~~~y~~~~~~~~~--~~~~~-~~~~i-~~~~~~g~iLVFl~~~~ei~~~~~~L~~ 148 (574)
+++|++..+ +..+.. |+.|++.++......... ...+. .+... .....++++|||++|+++++.+++.|.+
T Consensus 260 vA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~ 339 (1724)
T 4f92_B 260 VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRD 339 (1724)
T ss_dssp HHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHH
T ss_pred HHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHH
Confidence 999997532 333443 455555555433222111 11111 22222 2223578999999999999999999987
Q ss_pred HHhhcCCC----------------------------CCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc
Q 008209 149 EITNMGDQ----------------------------VGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 200 (574)
Q Consensus 149 ~~~~~~~~----------------------------~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ 200 (574)
........ .....|..+||+|++++|..+++.|++|. .+|+|||+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~-------i~vlvaTs 412 (1724)
T 4f92_B 340 MCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKH-------IQVLVSTA 412 (1724)
T ss_dssp HHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTC-------CCEEEECH
T ss_pred HHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCC-------CeEEEEcc
Confidence 54321000 01234788999999999999999999999 99999999
Q ss_pred cccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC---CCeEEeecccccccc--ccCCC
Q 008209 201 IAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ---PGKCFRLYTEKSFNN--DLQPQ 275 (574)
Q Consensus 201 iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~---~G~~~rl~t~~~~~~--~l~~~ 275 (574)
++++|||+|++++|| .....||+..|. ..|+|.++|.||+|||||.| .|.++.+.+..+... .+...
T Consensus 413 TLa~GVNlPa~~vVI----~~~~~~~~~~~~----~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~ 484 (1724)
T 4f92_B 413 TLAWGVNLPAHTVII----KGTQVYSPEKGR----WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQ 484 (1724)
T ss_dssp HHHHHSCCCBSEEEE----ECCEEEETTTTE----EEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTT
T ss_pred hhHhhCCCCCceEEE----eCCEEecCcCCC----cccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcC
Confidence 999999999999999 556789998764 45899999999999999988 699999877654321 11111
Q ss_pred Ccc--hhccCCchhhHHHHhhcCC-CCc------------------------------cccCCCCCCcHHHHHHHHHHHH
Q 008209 276 TYP--EILRSNLANTVLTLKKLGI-DDL------------------------------VHFDFMDPPAPETLMRALEVLN 322 (574)
Q Consensus 276 ~~p--ei~~~~l~~~~L~l~~~~~-~~~------------------------------~~~~~l~~P~~~~l~~al~~L~ 322 (574)
..| .-+...+.+.++.-..+|. .+. ...+.++....+.+..++..|.
T Consensus 485 ~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~~~L~ 564 (1724)
T 4f92_B 485 QLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLD 564 (1724)
T ss_dssp CSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred CCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccchHHHHHHHHHHHHHHHHHH
Confidence 111 1111122233332222221 111 0012223333456788999999
Q ss_pred HcCCcc--CC-C--CcChhhhhhccCCCCHHHHHHHHhccCCCCc-hhhHhHHhhccC-CCcccCChh
Q 008209 323 YLGALD--DD-G--NLTEMGEKMSEFPLDPQMSKMLVESPKYNCS-NEILSISAMLSV-PNCFVRPRE 383 (574)
Q Consensus 323 ~lgald--~~-~--~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~-~~~~~i~a~ls~-~~~f~~~~~ 383 (574)
..|+|. ++ | .+|++|++|++++++|..++.+.....-.+. .+++.+.|+.+. .++.++..+
T Consensus 565 ~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R~~E 632 (1724)
T 4f92_B 565 KNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEE 632 (1724)
T ss_dssp HTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCCGGG
T ss_pred HCCCeeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHHhCChhhccCCcCHHH
Confidence 999994 32 3 4899999999999999999999887665544 345555554443 455555443
No 7
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.97 E-value=1.2e-29 Score=307.45 Aligned_cols=358 Identities=14% Similarity=0.132 Sum_probs=244.7
Q ss_pred CCCeEEEchHHHHHHHhc---CCCCCCccEEEEecCC----CCCcchHHHHHHHHHHHh-hCCCccEEEEccCC-CHHHH
Q 008209 8 LLGGRYLTDGMLLREAMT---DPLLERYKVIVLDEAH----ERTLATDVLFGLLKEVLK-NRPDLKLVVMSATL-EAEKF 78 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~---~~~L~~~~~vIiDE~H----eR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl-~~~~~ 78 (574)
..+|+|||||.+...+.+ ...+.++++||+||+| +|+...+.++..++.+.. ..+++|+|+||||+ |++.+
T Consensus 1020 ~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dl 1099 (1724)
T 4f92_B 1020 KGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV 1099 (1724)
T ss_dssp HCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHH
T ss_pred CCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHH
Confidence 478999999997555533 2358899999999999 788888888888887665 45689999999999 89999
Q ss_pred HhhhCC--CCeEEeC--CeeeceeEEeecCCchhH---HHHHHHHHH-HHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHH
Q 008209 79 QGYFYG--APLMKVP--GRLHPVEIFYTQEPERDY---LEAAIRTVV-QIHMCEPSGDILVFLTGEEEIEDACRKITKEI 150 (574)
Q Consensus 79 ~~~f~~--~~~i~~~--gr~~~v~~~y~~~~~~~~---~~~~~~~~~-~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~ 150 (574)
++|++. ..+..+. .|+.|++.+....+.... .......+. .+....+++++|||++++..++.++..|.+..
T Consensus 1100 a~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~ 1179 (1724)
T 4f92_B 1100 AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTC 1179 (1724)
T ss_dssp HHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHH
Confidence 999973 3344444 455555554332221111 111111111 12223568899999999999999998886644
Q ss_pred hhcCCCC-------------------------CCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccccccc
Q 008209 151 TNMGDQV-------------------------GPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETS 205 (574)
Q Consensus 151 ~~~~~~~-------------------------~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~g 205 (574)
....... ....|..+||+|++++|..+++.|.+|. .+|+|||+++++|
T Consensus 1180 ~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~-------i~VLvaT~tlA~G 1252 (1724)
T 4f92_B 1180 AADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGA-------IQVVVASRSLCWG 1252 (1724)
T ss_dssp HHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTS-------BCEEEEEGGGSSS
T ss_pred hhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCC-------CeEEEEChHHHcC
Confidence 3211000 0124889999999999999999999999 9999999999999
Q ss_pred ccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC---CCeEEeeccccccc--cccCCCCcchh
Q 008209 206 LTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ---PGKCFRLYTEKSFN--NDLQPQTYPEI 280 (574)
Q Consensus 206 itip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~---~G~~~rl~t~~~~~--~~l~~~~~pei 280 (574)
||+|++++||. ....||...+ ...|.+..+|.||+|||||.| .|.|+.+.++.... ..+. ..|+.
T Consensus 1253 VnlPa~~VVI~----~~~~~dg~~~----~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll--~~~~p 1322 (1724)
T 4f92_B 1253 MNVAAHLVIIM----DTQYYNGKIH----AYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFL--YEPLP 1322 (1724)
T ss_dssp CCCCBSEEEEE----CSEEEETTTT----EEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHT--TSCBC
T ss_pred CCCCccEEEEe----cCccccCccc----ccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHh--CCCCc
Confidence 99999999994 3457887654 245899999999999999998 59999987764431 1222 12333
Q ss_pred ccCCch----hhHHHHhhcCC-CCcc------ccCC---------------------CCCCcHHHHHHHHHHHHHcCCcc
Q 008209 281 LRSNLA----NTVLTLKKLGI-DDLV------HFDF---------------------MDPPAPETLMRALEVLNYLGALD 328 (574)
Q Consensus 281 ~~~~l~----~~~L~l~~~~~-~~~~------~~~~---------------------l~~P~~~~l~~al~~L~~lgald 328 (574)
..+.|. ..++.....|. .+.. ...| ++.+..+.++.+++.|.+.|+|.
T Consensus 1323 veS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~~I~ 1402 (1724)
T 4f92_B 1323 VESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCIS 1402 (1724)
T ss_dssp CCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred eeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhcCcccccccccchhhHHHHHHHHHHHHHHHHHHCCCEE
Confidence 344333 33333333331 1100 0000 11223455788999999999994
Q ss_pred --CCC--CcChhhhhhccCCCCHHHHHHHHhccCCCCc-hhhHhHHhhccC-CCcccCCh
Q 008209 329 --DDG--NLTEMGEKMSEFPLDPQMSKMLVESPKYNCS-NEILSISAMLSV-PNCFVRPR 382 (574)
Q Consensus 329 --~~~--~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~-~~~~~i~a~ls~-~~~f~~~~ 382 (574)
+++ .+|++|++++.++++|..++++..+...++. ..++.+.+.-.. .++.++..
T Consensus 1403 ~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il~~a~ef~~i~~R~~ 1462 (1724)
T 4f92_B 1403 IEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHH 1462 (1724)
T ss_dssp EETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTSGGGTTCCCCTT
T ss_pred EcCCCCEeecHHHHHHHHHCCCHHHHHHHHHhccccCCHHHHHHHhcCCccccccccccc
Confidence 444 3699999999999999999999988766654 445555554332 44444443
No 8
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.96 E-value=5.5e-30 Score=275.71 Aligned_cols=220 Identities=19% Similarity=0.195 Sum_probs=167.9
Q ss_pred cCCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhh-CCC
Q 008209 7 VLLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYF-YGA 85 (574)
Q Consensus 7 ~~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f-~~~ 85 (574)
++.-+.++|.|.+.+.+..++.+.++++|||||+|+++...++.+++++.... .++.|+|+||||++.+. ..+. ...
T Consensus 88 ~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~-~~~~~~il~SAT~~~~~-~~~~~~~~ 165 (459)
T 2z83_A 88 GNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVE-LGEAAAIFMTATPPGTT-DPFPDSNA 165 (459)
T ss_dssp CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCC-CSSCCCSS
T ss_pred CCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhc-cCCccEEEEEcCCCcch-hhhccCCC
Confidence 45678999999999999999999999999999999998888888888877553 46899999999996432 1111 134
Q ss_pred CeEEeCCeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEc
Q 008209 86 PLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPL 165 (574)
Q Consensus 86 ~~i~~~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~l 165 (574)
|+..+.. .+|... .... +..+. ..++++|||+|++++++.+++.|.+ .++.+..+
T Consensus 166 pi~~~~~-~~~~~~------~~~~----~~~l~-----~~~~~~LVF~~s~~~~~~l~~~L~~---------~g~~v~~l 220 (459)
T 2z83_A 166 PIHDLQD-EIPDRA------WSSG----YEWIT-----EYAGKTVWFVASVKMGNEIAMCLQR---------AGKKVIQL 220 (459)
T ss_dssp CEEEEEC-CCCSSC------CSSC----CHHHH-----HCCSCEEEECSCHHHHHHHHHHHHH---------TTCCEEEE
T ss_pred CeEEecc-cCCcch------hHHH----HHHHH-----hcCCCEEEEeCChHHHHHHHHHHHh---------cCCcEEec
Confidence 4443221 111100 0000 01111 2378999999999999999999987 35778999
Q ss_pred CCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceee---eeeccHh
Q 008209 166 YSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLL---VSPISKA 242 (574)
Q Consensus 166 hs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~---~~~is~~ 242 (574)
||. +|..+++.|++|. .+|||||+++|+|||||+ ++|||+|+.+.+.|+. .+.+.+. ..|.|.+
T Consensus 221 h~~----~R~~~~~~f~~g~-------~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~-~~~~~~~~~~d~p~s~~ 287 (459)
T 2z83_A 221 NRK----SYDTEYPKCKNGD-------WDFVITTDISEMGANFGA-SRVIDCRKSVKPTILE-EGEGRVILGNPSPITSA 287 (459)
T ss_dssp STT----CCCCCGGGSSSCC-------CSEEEESSCC---CCCSC-SEEEECCEECCEEEEC-SSSCEEEECSCEECCHH
T ss_pred CHH----HHHHHHhhccCCC-------ceEEEECChHHhCeecCC-CEEEECCccccccccc-ccccccccccCCCCCHH
Confidence 984 7888999999998 999999999999999999 9999999988888763 3344444 3899999
Q ss_pred hHHHhcccCCCCC--CCeEEeecccc
Q 008209 243 SAHQRSGRAGRTQ--PGKCFRLYTEK 266 (574)
Q Consensus 243 ~~~QR~GRaGR~~--~G~~~rl~t~~ 266 (574)
+|.||+|||||.+ +|.||.+++..
T Consensus 288 ~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 288 SAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHHHhccccCCCCCCCCeEEEEEccc
Confidence 9999999999997 89999999875
No 9
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.96 E-value=8.1e-30 Score=273.89 Aligned_cols=221 Identities=19% Similarity=0.210 Sum_probs=174.5
Q ss_pred ccCCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhhCCC
Q 008209 6 CVLLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGA 85 (574)
Q Consensus 6 ~~~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f~~~ 85 (574)
.+++.|.++|+|.|.+++.+++.+.++++|||||+|+++...+..+.++... ...++.|+|+||||++.+....++.+.
T Consensus 85 ~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~-~~~~~~~~i~~SAT~~~~~~~~~~~~~ 163 (451)
T 2jlq_A 85 TGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTR-VEMGEAAAIFMTATPPGSTDPFPQSNS 163 (451)
T ss_dssp CSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHH-HHTTSCEEEEECSSCTTCCCSSCCCSS
T ss_pred CCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHh-hcCCCceEEEEccCCCccchhhhcCCC
Confidence 4467899999999999999999999999999999998877777766666442 245689999999999765544455555
Q ss_pred CeEEeCCeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEc
Q 008209 86 PLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPL 165 (574)
Q Consensus 86 ~~i~~~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~l 165 (574)
+++.++ +..|... |.. ..+ .+ . ...+++|||+|++++++.+++.|.+ .++.+..+
T Consensus 164 ~~~~~~-~~~p~~~-~~~--~~~-------~l----~-~~~~~~lVF~~s~~~a~~l~~~L~~---------~g~~~~~l 218 (451)
T 2jlq_A 164 PIEDIE-REIPERS-WNT--GFD-------WI----T-DYQGKTVWFVPSIKAGNDIANCLRK---------SGKRVIQL 218 (451)
T ss_dssp CEEEEE-CCCCSSC-CSS--SCH-------HH----H-HCCSCEEEECSSHHHHHHHHHHHHT---------TTCCEEEE
T ss_pred ceEecC-ccCCchh-hHH--HHH-------HH----H-hCCCCEEEEcCCHHHHHHHHHHHHH---------cCCeEEEC
Confidence 555543 3333211 110 001 11 1 2467999999999999999999976 35678899
Q ss_pred CCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeee---eeccHh
Q 008209 166 YSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLV---SPISKA 242 (574)
Q Consensus 166 hs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~---~~is~~ 242 (574)
||.+. .++++.|++|. .+|||||+++|+|||||+ ++|||+|+.+.+.|| ..+.+.+.. .|.|.+
T Consensus 219 h~~~~----~~~~~~f~~g~-------~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d-~~~~~~l~~~~~~p~s~~ 285 (451)
T 2jlq_A 219 SRKTF----DTEYPKTKLTD-------WDFVVTTDISEMGANFRA-GRVIDPRRCLKPVIL-TDGPERVILAGPIPVTPA 285 (451)
T ss_dssp CTTTH----HHHGGGGGSSC-------CSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEE-CSSSCEEEEEEEEECCHH
T ss_pred CHHHH----HHHHHhhccCC-------ceEEEECCHHHhCcCCCC-CEEEECCCccccccc-ccccceeeecccccCCHH
Confidence 99753 56888999888 999999999999999999 999999999999998 666677766 899999
Q ss_pred hHHHhcccCCCCC--CCeEEeeccc
Q 008209 243 SAHQRSGRAGRTQ--PGKCFRLYTE 265 (574)
Q Consensus 243 ~~~QR~GRaGR~~--~G~~~rl~t~ 265 (574)
+|.||+|||||.+ +|.||.++..
T Consensus 286 ~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 286 SAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp HHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred HHHHhccccCCCCCCCccEEEEeCC
Confidence 9999999999999 7899888653
No 10
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.95 E-value=1.7e-28 Score=260.08 Aligned_cols=223 Identities=16% Similarity=0.248 Sum_probs=157.2
Q ss_pred cCCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHH-hhCCCccEEEEccCCCHHHH---Hhh
Q 008209 7 VLLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVL-KNRPDLKLVVMSATLEAEKF---QGY 81 (574)
Q Consensus 7 ~~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~-~~~~~~klvlmSATl~~~~~---~~~ 81 (574)
...+|+|+|+|+|++.+..+. .+.++++||+||+|+ ..+.++. ..+..++ ..+++.|+|+||||++.+.. ..+
T Consensus 158 ~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~-~~~~~~~-~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 235 (414)
T 3eiq_A 158 EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADE-MLSRGFK-DQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKF 235 (414)
T ss_dssp TCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHH-HHHTTTH-HHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTT
T ss_pred CCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHH-hhccCcH-HHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHH
Confidence 347999999999999998766 488899999999995 1222222 2222333 35578999999999964333 345
Q ss_pred hCCCCeEEeCCeeec---eeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCC
Q 008209 82 FYGAPLMKVPGRLHP---VEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVG 158 (574)
Q Consensus 82 f~~~~~i~~~gr~~~---v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~ 158 (574)
+.+...+.+.....+ +..+|......+. ....+..+......+++|||++++++++.+++.|.+ .
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~---------~ 303 (414)
T 3eiq_A 236 MRDPIRILVKKEELTLEGIRQFYINVEREEW---KLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA---------R 303 (414)
T ss_dssp CSSCEEECCCCCCCCTTSCCEEEEECSSSTT---HHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHT---------T
T ss_pred cCCCEEEEecCCccCCCCceEEEEEeChHHh---HHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHh---------c
Confidence 544433433333222 3444444333332 223445555556788999999999999999999976 4
Q ss_pred CeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeee
Q 008209 159 PVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP 238 (574)
Q Consensus 159 ~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~ 238 (574)
++.+..+||++++.+|..+++.|++|. .+|+|||+++++|+|+|++++||+++. |
T Consensus 304 ~~~~~~~h~~~~~~~r~~~~~~f~~g~-------~~vlv~T~~~~~Gidip~v~~Vi~~~~------------------p 358 (414)
T 3eiq_A 304 DFTVSAMHGDMDQKERDVIMREFRSGS-------SRVLITTDLLARGIDVQQVSLVINYDL------------------P 358 (414)
T ss_dssp TCCCEEC---CHHHHHHHHHHHHSCC----------CEEECSSCC--CCGGGCSCEEESSC------------------C
T ss_pred CCeEEEecCCCCHHHHHHHHHHHHcCC-------CcEEEECCccccCCCccCCCEEEEeCC------------------C
Confidence 677999999999999999999999988 999999999999999999999999887 7
Q ss_pred ccHhhHHHhcccCCCCC-CCeEEeecccccc
Q 008209 239 ISKASAHQRSGRAGRTQ-PGKCFRLYTEKSF 268 (574)
Q Consensus 239 is~~~~~QR~GRaGR~~-~G~~~rl~t~~~~ 268 (574)
.|..+|.||+|||||.| +|.||.++++.+.
T Consensus 359 ~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 389 (414)
T 3eiq_A 359 TNRENYIHRIGRGGRFGRKGVAINMVTEEDK 389 (414)
T ss_dssp SSTHHHHHHSCCC-------CEEEEECSTHH
T ss_pred CCHHHhhhhcCcccCCCCCceEEEEEcHHHH
Confidence 89999999999999997 6999999998765
No 11
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.3e-28 Score=288.65 Aligned_cols=244 Identities=17% Similarity=0.162 Sum_probs=179.6
Q ss_pred ccCCCeEEEchHHHHHHHhcCCC-CCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCC-CHHHHHhhhC
Q 008209 6 CVLLGGRYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQGYFY 83 (574)
Q Consensus 6 ~~~~~I~~~T~g~Ll~~l~~~~~-L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl-~~~~~~~~f~ 83 (574)
....+|+|||||+|++++..++. +.++++|||||+| |..+.++...+-..+...++++|+|+||||+ +...+.+|+.
T Consensus 264 ~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH-~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~ 342 (1108)
T 3l9o_A 264 NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH-YMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWIC 342 (1108)
T ss_dssp CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGG-GTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHH
T ss_pred CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhh-hccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHH
Confidence 34588999999999999988775 8999999999999 3444333333222233356789999999999 6777777764
Q ss_pred -----CCCeEEeCCeeeceeEEeecCCch---------------hHH---------------------------------
Q 008209 84 -----GAPLMKVPGRLHPVEIFYTQEPER---------------DYL--------------------------------- 110 (574)
Q Consensus 84 -----~~~~i~~~gr~~~v~~~y~~~~~~---------------~~~--------------------------------- 110 (574)
.+.++..+.+..|++.++.+.... .+.
T Consensus 343 ~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (1108)
T 3l9o_A 343 KIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAK 422 (1108)
T ss_dssp HHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC---------------------------
T ss_pred hhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhccccccccccccccccccccccc
Confidence 255677788888887665332100 000
Q ss_pred ---HHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCC---------------------C---------
Q 008209 111 ---EAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQ---------------------V--------- 157 (574)
Q Consensus 111 ---~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~---------------------~--------- 157 (574)
...+..++..+.....+++|||++++++++.++..|...-...... .
T Consensus 423 ~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~ 502 (1108)
T 3l9o_A 423 GDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPL 502 (1108)
T ss_dssp --CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHH
T ss_pred ccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHh
Confidence 2223344455555667899999999999999999886421110000 0
Q ss_pred CCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeee
Q 008209 158 GPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVS 237 (574)
Q Consensus 158 ~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~ 237 (574)
....|..+||+|++.+|..+++.|..|. .+|||||+++++|||+|++++||+++. .||+.. ..
T Consensus 503 l~~gV~~~Hg~l~~~~R~~v~~~F~~G~-------ikVLVAT~vla~GIDiP~v~~VI~~~~----~~d~~~------~r 565 (1108)
T 3l9o_A 503 LRRGIGIHHSGLLPILKEVIEILFQEGF-------LKVLFATETFSIGLNMPAKTVVFTSVR----KWDGQQ------FR 565 (1108)
T ss_dssp HHHTEEEECSCSCHHHHHHHHHHHHHTC-------CCEEEEESCCCSCCCC--CEEEESCSE----EESSSC------EE
T ss_pred hhcCeeeecCCCCHHHHHHHHHHHhCCC-------CeEEEECcHHhcCCCCCCceEEEecCc----ccCccc------cc
Confidence 0012899999999999999999999998 999999999999999999999997654 555543 35
Q ss_pred eccHhhHHHhcccCCCCC---CCeEEeeccccc
Q 008209 238 PISKASAHQRSGRAGRTQ---PGKCFRLYTEKS 267 (574)
Q Consensus 238 ~is~~~~~QR~GRaGR~~---~G~~~rl~t~~~ 267 (574)
|+|.++|.||+|||||.| +|.||.++++..
T Consensus 566 ~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~ 598 (1108)
T 3l9o_A 566 WVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 598 (1108)
T ss_dssp ECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCC
T ss_pred cCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Confidence 899999999999999999 799999998763
No 12
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.95 E-value=4.6e-29 Score=290.08 Aligned_cols=291 Identities=14% Similarity=0.186 Sum_probs=195.4
Q ss_pred cCCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCC-CHHHHHhhhC-
Q 008209 7 VLLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQGYFY- 83 (574)
Q Consensus 7 ~~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl-~~~~~~~~f~- 83 (574)
...+|+|+|||+|++.+..+. .+.++++|||||+| +..+.++...+...+...++++++|+||||+ +...|.+|++
T Consensus 122 ~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH-~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~n~~ef~~~l~~ 200 (997)
T 4a4z_A 122 PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH-YVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGR 200 (997)
T ss_dssp TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTT-CCCTTCTTCCHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHH
T ss_pred CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcc-cccccchHHHHHHHHHhcccCCCEEEEcCCCCChHHHHHHHhc
Confidence 357899999999999997765 58999999999999 3333322222222223356789999999999 7899999985
Q ss_pred ----CCCeEEeCCeeeceeEEeecCCc-------------hhHH------------------------------------
Q 008209 84 ----GAPLMKVPGRLHPVEIFYTQEPE-------------RDYL------------------------------------ 110 (574)
Q Consensus 84 ----~~~~i~~~gr~~~v~~~y~~~~~-------------~~~~------------------------------------ 110 (574)
++.++..+++..|+..++..... ..+.
T Consensus 201 ~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (997)
T 4a4z_A 201 TKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNT 280 (997)
T ss_dssp HHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-----------------------------
T ss_pred ccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccc
Confidence 34577788898888766532100 0000
Q ss_pred ----------------------------------------HHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHH
Q 008209 111 ----------------------------------------EAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEI 150 (574)
Q Consensus 111 ----------------------------------------~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~ 150 (574)
...+..++..+.....+++|||++++++++.++..|.+.-
T Consensus 281 rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~ 360 (997)
T 4a4z_A 281 RDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGIN 360 (997)
T ss_dssp ------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCC
T ss_pred cccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCC
Confidence 0112344455555667899999999999999998885310
Q ss_pred ------------------hhcCC------------CCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc
Q 008209 151 ------------------TNMGD------------QVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 200 (574)
Q Consensus 151 ------------------~~~~~------------~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ 200 (574)
..+.. ......+.++||+|++.+|..+++.|..|. .+|||||+
T Consensus 361 ~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~-------~kVLvAT~ 433 (997)
T 4a4z_A 361 FCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGF-------IKVLFATE 433 (997)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTC-------CSEEEECT
T ss_pred CCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCC-------CcEEEEch
Confidence 00000 000124789999999999999999999998 99999999
Q ss_pred cccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC---CCeEEeeccccccccc-cCC--
Q 008209 201 IAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ---PGKCFRLYTEKSFNND-LQP-- 274 (574)
Q Consensus 201 iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~---~G~~~rl~t~~~~~~~-l~~-- 274 (574)
++++|||+|++.+|| .+. ..||+.. ..|+|..+|.||+|||||.| +|.||.++........ +..
T Consensus 434 ~~a~GIDiP~~~VVi-~~~---~k~dg~~------~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~i 503 (997)
T 4a4z_A 434 TFAMGLNLPTRTVIF-SSI---RKHDGNG------LRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVT 503 (997)
T ss_dssp HHHHSCCCCCSEEEE-SCS---EEEETTE------EEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHHH
T ss_pred HhhCCCCCCCceEEE-ecc---ccccCcc------CCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHHh
Confidence 999999999955555 444 3466553 34999999999999999987 7999999853222111 110
Q ss_pred CCcchhccCC------chhhHHHHhhcCCCCccccCCCCCCcHHHHH
Q 008209 275 QTYPEILRSN------LANTVLTLKKLGIDDLVHFDFMDPPAPETLM 315 (574)
Q Consensus 275 ~~~pei~~~~------l~~~~L~l~~~~~~~~~~~~~l~~P~~~~l~ 315 (574)
...|+.+++. +...+|++...++.++..+.|.+.+....+.
T Consensus 504 ~~~~~~l~s~~~~~ynm~l~ll~~~~~~~~~~l~~sf~~~~~~~~~~ 550 (997)
T 4a4z_A 504 MGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQP 550 (997)
T ss_dssp HSCCCCCCCCCCCCHHHHHHHHHHCTTHHHHHHHTSHHHHHHHHHHH
T ss_pred cCCCcccccccccchHHHHHHHhhccccHHHHHHHHHHHHHHHhhhH
Confidence 1234555542 2333334444445555556665555444433
No 13
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.95 E-value=7.6e-28 Score=266.91 Aligned_cols=223 Identities=18% Similarity=0.205 Sum_probs=174.2
Q ss_pred ccccCCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhhC
Q 008209 4 CFCVLLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFY 83 (574)
Q Consensus 4 ~~~~~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f~ 83 (574)
+..+++.+.++|.|.|.+++..++.+.++++|||||+|+++...+..+..++..+. +++.|+|+||||++.. ...++.
T Consensus 250 ~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~-~~~~q~il~SAT~~~~-~~~~~~ 327 (618)
T 2whx_A 250 DHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVE-MGEAAAIFMTATPPGS-TDPFPQ 327 (618)
T ss_dssp CCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHH-HTSCEEEEECSSCTTC-CCSSCC
T ss_pred ccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHHhc-ccCccEEEEECCCchh-hhhhhc
Confidence 45567889999999999999999999999999999999987777777777766553 3689999999999643 223332
Q ss_pred -CCCeEEeCCeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEE
Q 008209 84 -GAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKV 162 (574)
Q Consensus 84 -~~~~i~~~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v 162 (574)
+.+++.++.+ +....... .+..+. +.++++|||++++++++.+++.|.+ .+..+
T Consensus 328 ~~~~~~~v~~~-------~~~~~~~~----ll~~l~-----~~~~~~LVF~~s~~~a~~l~~~L~~---------~g~~v 382 (618)
T 2whx_A 328 SNSPIEDIERE-------IPERSWNT----GFDWIT-----DYQGKTVWFVPSIKAGNDIANCLRK---------SGKRV 382 (618)
T ss_dssp CSSCEEEEECC-------CCSSCCSS----SCHHHH-----HCCSCEEEECSSHHHHHHHHHHHHH---------TTCCE
T ss_pred cCCceeeeccc-------CCHHHHHH----HHHHHH-----hCCCCEEEEECChhHHHHHHHHHHH---------cCCcE
Confidence 2333333222 21111011 111111 2478999999999999999999987 35678
Q ss_pred EEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceee--cCCCCcceeeeeecc
Q 008209 163 VPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVY--NPRVRVESLLVSPIS 240 (574)
Q Consensus 163 ~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y--~~~~~~~~l~~~~is 240 (574)
..+||. +|.++++.|++|. .+|||||+++|+||||| |++|||+|+.+.+++ +.+.++......|.|
T Consensus 383 ~~lhg~----~R~~~l~~F~~g~-------~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s 450 (618)
T 2whx_A 383 IQLSRK----TFDTEYPKTKLTD-------WDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVT 450 (618)
T ss_dssp EEECTT----THHHHTTHHHHSC-------CSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECC
T ss_pred EEEChH----HHHHHHHhhcCCC-------cEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCC
Confidence 999984 6778999999888 99999999999999998 999999999888776 555567777888999
Q ss_pred HhhHHHhcccCCCCC--CCeEEeeccc
Q 008209 241 KASAHQRSGRAGRTQ--PGKCFRLYTE 265 (574)
Q Consensus 241 ~~~~~QR~GRaGR~~--~G~~~rl~t~ 265 (574)
.++|.||+|||||.+ +|.||.++++
T Consensus 451 ~~~yiQR~GRaGR~g~~~G~ai~l~~~ 477 (618)
T 2whx_A 451 PASAAQRRGRIGRNPAQEDDQYVFSGD 477 (618)
T ss_dssp HHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred HHHHHHhccccCCCCCCCCeEEEEccC
Confidence 999999999999996 7999999983
No 14
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.95 E-value=3.2e-27 Score=252.60 Aligned_cols=218 Identities=17% Similarity=0.219 Sum_probs=165.4
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHh---hCCCccEEEEccCCCH--HHHH-h
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLK---NRPDLKLVVMSATLEA--EKFQ-G 80 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~---~~~~~klvlmSATl~~--~~~~-~ 80 (574)
+.+|+|+|||+|++.+.... .+.++++||+||+| |..+.++. ..++.++. .+++.|+++||||+.. ..+. .
T Consensus 179 ~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah-~~~~~gf~-~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~ 256 (434)
T 2db3_A 179 GCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEAD-RMLDMGFS-EDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGE 256 (434)
T ss_dssp CCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHH-HHTSTTTH-HHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHT
T ss_pred CCCEEEEChHHHHHHHHhCCcccccCCeEEEccHh-hhhccCcH-HHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHH
Confidence 46899999999999987665 58999999999999 33333332 22333333 3578999999999963 3444 4
Q ss_pred hhCCCCeEEeCC---eeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCC
Q 008209 81 YFYGAPLMKVPG---RLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQV 157 (574)
Q Consensus 81 ~f~~~~~i~~~g---r~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~ 157 (574)
|+.+...+.+.. ....+...+......+.... +..+.... .+++|||++++++++.+++.|.+
T Consensus 257 ~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~----l~~~l~~~-~~~~lVF~~t~~~a~~l~~~L~~--------- 322 (434)
T 2db3_A 257 FLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSK----LIEILSEQ-ADGTIVFVETKRGADFLASFLSE--------- 322 (434)
T ss_dssp TCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHH----HHHHHHHC-CTTEEEECSSHHHHHHHHHHHHH---------
T ss_pred hccCCEEEEeccccccccccceEEEEeCcHHHHHH----HHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHh---------
Confidence 554333333321 22335555544444444333 33333322 34499999999999999999986
Q ss_pred CCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeee
Q 008209 158 GPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVS 237 (574)
Q Consensus 158 ~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~ 237 (574)
.++.+..+||++++.+|..+++.|++|. .+|+|||+++++|||+|++++||++++
T Consensus 323 ~~~~~~~lhg~~~~~~R~~~l~~F~~g~-------~~vLvaT~v~~rGlDi~~v~~VI~~d~------------------ 377 (434)
T 2db3_A 323 KEFPTTSIHGDRLQSQREQALRDFKNGS-------MKVLIATSVASRGLDIKNIKHVINYDM------------------ 377 (434)
T ss_dssp TTCCEEEESTTSCHHHHHHHHHHHHTSS-------CSEEEECGGGTSSCCCTTCCEEEESSC------------------
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-------CcEEEEchhhhCCCCcccCCEEEEECC------------------
Confidence 4677999999999999999999999988 899999999999999999999999887
Q ss_pred eccHhhHHHhcccCCCCC-CCeEEeecccc
Q 008209 238 PISKASAHQRSGRAGRTQ-PGKCFRLYTEK 266 (574)
Q Consensus 238 ~is~~~~~QR~GRaGR~~-~G~~~rl~t~~ 266 (574)
|.+.++|.||+|||||.| +|.|+.+++.+
T Consensus 378 p~~~~~y~qriGR~gR~g~~G~a~~~~~~~ 407 (434)
T 2db3_A 378 PSKIDDYVHRIGRTGRVGNNGRATSFFDPE 407 (434)
T ss_dssp CSSHHHHHHHHTTSSCTTCCEEEEEEECTT
T ss_pred CCCHHHHHHHhcccccCCCCCEEEEEEecc
Confidence 789999999999999997 59999999854
No 15
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.95 E-value=3e-27 Score=260.48 Aligned_cols=217 Identities=23% Similarity=0.273 Sum_probs=157.2
Q ss_pred cCCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhhCCCC
Q 008209 7 VLLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAP 86 (574)
Q Consensus 7 ~~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f~~~~ 86 (574)
...+|+|+|||+|++. ..-.+.++++|||||+|+++...+..+..+.+.+.......+++||||++.. +. ...+
T Consensus 296 ~~~~IlV~TPGrLl~~--~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~-i~---~~~p 369 (666)
T 3o8b_A 296 TGAPVTYSTYGKFLAD--GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGS-VT---VPHP 369 (666)
T ss_dssp CCCSEEEEEHHHHHHT--TSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTC-CC---CCCT
T ss_pred CCCCEEEECcHHHHhC--CCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCCCcc-cc---cCCc
Confidence 4589999999998421 1224778999999999998888877777766665544444588899998642 00 0111
Q ss_pred eEEeCCeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcC
Q 008209 87 LMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLY 166 (574)
Q Consensus 87 ~i~~~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lh 166 (574)
. .+++...+.... .+....+ . .....++++|||++++++++.+++.|++ .++.+..+|
T Consensus 370 ~------i~~v~~~~~~~i--~~~~~~~----~-l~~~~~~~vLVFv~Tr~~ae~la~~L~~---------~g~~v~~lH 427 (666)
T 3o8b_A 370 N------IEEVALSNTGEI--PFYGKAI----P-IEAIRGGRHLIFCHSKKKCDELAAKLSG---------LGINAVAYY 427 (666)
T ss_dssp T------EEEEECBSCSSE--EETTEEE----C-GGGSSSSEEEEECSCHHHHHHHHHHHHT---------TTCCEEEEC
T ss_pred c------eEEEeecccchh--HHHHhhh----h-hhhccCCcEEEEeCCHHHHHHHHHHHHh---------CCCcEEEec
Confidence 1 111111111100 0000000 0 1123688999999999999999999986 467899999
Q ss_pred CCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCccccee----ecCCCCcceeeeeeccHh
Q 008209 167 STLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKV----YNPRVRVESLLVSPISKA 242 (574)
Q Consensus 167 s~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~----y~~~~~~~~l~~~~is~~ 242 (574)
|++++++ ++++. ++||||||++|+||||| |++|||+|+.+..+ |||..++..+ ..|+|.+
T Consensus 428 G~l~q~e-------r~~~~-------~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~-~~P~s~~ 491 (666)
T 3o8b_A 428 RGLDVSV-------IPTIG-------DVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETT-TVPQDAV 491 (666)
T ss_dssp TTSCGGG-------SCSSS-------CEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEE-EEECBHH
T ss_pred CCCCHHH-------HHhCC-------CcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccc-cCcCCHH
Confidence 9999765 23344 79999999999999997 99999999998776 5677777554 6799999
Q ss_pred hHHHhcccCCCCCCCeEEeecccccc
Q 008209 243 SAHQRSGRAGRTQPGKCFRLYTEKSF 268 (574)
Q Consensus 243 ~~~QR~GRaGR~~~G~~~rl~t~~~~ 268 (574)
+|.||+|||||.++|. |.||++.+.
T Consensus 492 syiQRiGRtGRg~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 492 SRSQRRGRTGRGRRGI-YRFVTPGER 516 (666)
T ss_dssp HHHHHHTTBCSSSCEE-EEESCCCCB
T ss_pred HHHHHhccCCCCCCCE-EEEEecchh
Confidence 9999999999977899 999998766
No 16
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.95 E-value=2.6e-27 Score=248.78 Aligned_cols=229 Identities=17% Similarity=0.189 Sum_probs=168.0
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCH--HHHH-hhhC
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA--EKFQ-GYFY 83 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~--~~~~-~~f~ 83 (574)
..+|+|+|+|.|++.+.... .+.++++||+||+|...-..++...+.+.....+++.++|+||||+.. ..+. .++.
T Consensus 121 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~ 200 (395)
T 3pey_A 121 NAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVP 200 (395)
T ss_dssp CCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSC
T ss_pred CCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCC
Confidence 47899999999999987765 589999999999995322222322222222224568999999999963 3343 4444
Q ss_pred CCCeEEeCCeee---ceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCe
Q 008209 84 GAPLMKVPGRLH---PVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPV 160 (574)
Q Consensus 84 ~~~~i~~~gr~~---~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~ 160 (574)
+...+.+..... .+...|........ ....+..+....+.+++|||++++++++.+++.|.+ .+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~---------~~~ 268 (395)
T 3pey_A 201 NANTLELQTNEVNVDAIKQLYMDCKNEAD---KFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKS---------EGH 268 (395)
T ss_dssp SCEEECCCGGGCSCTTEEEEEEECSSHHH---HHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHH---------TTC
T ss_pred CCeEEEccccccccccccEEEEEcCchHH---HHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHh---------cCC
Confidence 443444333322 23444444332222 223344444445678999999999999999999986 356
Q ss_pred EEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeecc
Q 008209 161 KVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPIS 240 (574)
Q Consensus 161 ~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is 240 (574)
.+..+||+++..+|..+++.|+.|. .+|+|||+++++|+|+|++++||+++..+ +...+.|
T Consensus 269 ~~~~~~~~~~~~~r~~~~~~f~~g~-------~~vlv~T~~~~~Gidip~~~~Vi~~~~p~------------~~~~~~s 329 (395)
T 3pey_A 269 EVSILHGDLQTQERDRLIDDFREGR-------SKVLITTNVLARGIDIPTVSMVVNYDLPT------------LANGQAD 329 (395)
T ss_dssp CCEEECTTSCHHHHHHHHHHHHTTS-------CCEEEECGGGSSSCCCTTEEEEEESSCCB------------CTTSSBC
T ss_pred cEEEeCCCCCHHHHHHHHHHHHCCC-------CCEEEECChhhcCCCcccCCEEEEcCCCC------------CCcCCCC
Confidence 7899999999999999999999988 89999999999999999999999887621 1112469
Q ss_pred HhhHHHhcccCCCCCC-CeEEeeccccc
Q 008209 241 KASAHQRSGRAGRTQP-GKCFRLYTEKS 267 (574)
Q Consensus 241 ~~~~~QR~GRaGR~~~-G~~~rl~t~~~ 267 (574)
..+|.||+|||||.|. |.|+.+++...
T Consensus 330 ~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 357 (395)
T 3pey_A 330 PATYIHRIGRTGRFGRKGVAISFVHDKN 357 (395)
T ss_dssp HHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred HHHhhHhccccccCCCCceEEEEEechH
Confidence 9999999999999985 99999988644
No 17
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.95 E-value=1.7e-27 Score=251.99 Aligned_cols=229 Identities=17% Similarity=0.171 Sum_probs=165.5
Q ss_pred CCCeEEEchHHHHHHHhcCC--CCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHH--HH-Hhhh
Q 008209 8 LLGGRYLTDGMLLREAMTDP--LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAE--KF-QGYF 82 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~--~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~--~~-~~~f 82 (574)
..+|+|+|+|.|++.+.+.. .+.++++||+||+|...-...+...........+++.++|+||||++.. .+ ..++
T Consensus 143 ~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 222 (412)
T 3fht_A 143 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVV 222 (412)
T ss_dssp CCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHS
T ss_pred CCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhc
Confidence 36899999999999997644 4689999999999942111111111111112245689999999999643 33 4455
Q ss_pred CCCCeEEeCCee---eceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCC
Q 008209 83 YGAPLMKVPGRL---HPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGP 159 (574)
Q Consensus 83 ~~~~~i~~~gr~---~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~ 159 (574)
.+...+.+.... ..+...|......+.. ...+..+.....++++|||++++++++.+++.|.+ .+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~---------~~ 290 (412)
T 3fht_A 223 PDPNVIKLKREEETLDTIKQYYVLCSSRDEK---FQALCNLYGAITIAQAMIFCHTRKTASWLAAELSK---------EG 290 (412)
T ss_dssp SSCEEECCCGGGSSCTTEEEEEEECSSHHHH---HHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHH---------TT
T ss_pred CCCeEEeeccccccccCceEEEEEcCChHHH---HHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHh---------CC
Confidence 444444443322 2244444444433322 22333333334678999999999999999999987 35
Q ss_pred eEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeec
Q 008209 160 VKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPI 239 (574)
Q Consensus 160 ~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~i 239 (574)
..+..+||+++..+|..+++.|.+|. .+|+|||+++++|||+|++++||++|....+.+ +.
T Consensus 291 ~~~~~~~~~~~~~~r~~~~~~f~~g~-------~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~------------~~ 351 (412)
T 3fht_A 291 HQVALLSGEMMVEQRAAVIERFREGK-------EKVLVTTNVCARGIDVEQVSVVINFDLPVDKDG------------NP 351 (412)
T ss_dssp CCCEEECTTSCHHHHHHHHHHHHTTS-------CSEEEECGGGTSSCCCTTEEEEEESSCCBCSSS------------SB
T ss_pred CeEEEecCCCCHHHHHHHHHHHHCCC-------CcEEEEcCccccCCCccCCCEEEEECCCCCCCC------------Cc
Confidence 67899999999999999999999988 899999999999999999999999887322211 25
Q ss_pred cHhhHHHhcccCCCCCC-CeEEeeccccc
Q 008209 240 SKASAHQRSGRAGRTQP-GKCFRLYTEKS 267 (574)
Q Consensus 240 s~~~~~QR~GRaGR~~~-G~~~rl~t~~~ 267 (574)
|.++|.||+|||||.+. |.|+.+++...
T Consensus 352 s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 380 (412)
T 3fht_A 352 DNETYLHRIGRTGRFGKRGLAVNMVDSKH 380 (412)
T ss_dssp CHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred chheeecccCcccCCCCCceEEEEEcChh
Confidence 78999999999999875 99999998654
No 18
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.95 E-value=7.7e-27 Score=242.71 Aligned_cols=219 Identities=20% Similarity=0.269 Sum_probs=170.9
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCCHH---HHHhhh
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLEAE---KFQGYF 82 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~~~---~~~~~f 82 (574)
..+|+|+|++.|++.+..+. .+.++++||+||+|.. ....+ ...+..++. ..++.++++||||++.+ .+..++
T Consensus 123 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~-~~~~~-~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 200 (367)
T 1hv8_A 123 NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEM-LNMGF-IKDVEKILNACNKDKRILLFSATMPREILNLAKKYM 200 (367)
T ss_dssp TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHH-HTTTT-HHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHC
T ss_pred CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHh-hhhch-HHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHc
Confidence 47899999999999988765 4899999999999952 11222 222333333 45689999999999753 445666
Q ss_pred CCCCeEEeCCeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEE
Q 008209 83 YGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKV 162 (574)
Q Consensus 83 ~~~~~i~~~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v 162 (574)
++...+.... ...+...|......+.... +..+.. ..++++|||++++++++.+++.|.+ .+..+
T Consensus 201 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~---------~~~~~ 265 (367)
T 1hv8_A 201 GDYSFIKAKI-NANIEQSYVEVNENERFEA----LCRLLK-NKEFYGLVFCKTKRDTKELASMLRD---------IGFKA 265 (367)
T ss_dssp CSEEEEECCS-SSSSEEEEEECCGGGHHHH----HHHHHC-STTCCEEEECSSHHHHHHHHHHHHH---------TTCCE
T ss_pred CCCeEEEecC-CCCceEEEEEeChHHHHHH----HHHHHh-cCCCcEEEEECCHHHHHHHHHHHHh---------cCCCe
Confidence 6544444332 2345555555555555443 333333 5678999999999999999999986 35778
Q ss_pred EEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHh
Q 008209 163 VPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKA 242 (574)
Q Consensus 163 ~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~ 242 (574)
..+||+++..+|..+++.|.+|. .+|+|||+++++|+|+|++++||+++. |.|..
T Consensus 266 ~~~~~~~~~~~r~~~~~~f~~~~-------~~vlv~T~~~~~Gid~~~~~~Vi~~~~------------------~~s~~ 320 (367)
T 1hv8_A 266 GAIHGDLSQSQREKVIRLFKQKK-------IRILIATDVMSRGIDVNDLNCVINYHL------------------PQNPE 320 (367)
T ss_dssp EEECSSSCHHHHHHHHHHHHTTS-------SSEEEECTTHHHHCCCSCCSEEEESSC------------------CSCHH
T ss_pred EEeeCCCCHHHHHHHHHHHHcCC-------CeEEEECChhhcCCCcccCCEEEEecC------------------CCCHH
Confidence 99999999999999999999888 999999999999999999999999886 88999
Q ss_pred hHHHhcccCCCCC-CCeEEeecccccc
Q 008209 243 SAHQRSGRAGRTQ-PGKCFRLYTEKSF 268 (574)
Q Consensus 243 ~~~QR~GRaGR~~-~G~~~rl~t~~~~ 268 (574)
+|.||+|||||.| +|.|+.++++.++
T Consensus 321 ~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 347 (367)
T 1hv8_A 321 SYMHRIGRTGRAGKKGKAISIINRREY 347 (367)
T ss_dssp HHHHHSTTTCCSSSCCEEEEEECTTSH
T ss_pred HhhhcccccccCCCccEEEEEEcHHHH
Confidence 9999999999997 7999999998766
No 19
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.94 E-value=4.2e-27 Score=249.65 Aligned_cols=221 Identities=16% Similarity=0.163 Sum_probs=162.5
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHhh-----CCCccEEEEccCCCH--HHHH
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLKN-----RPDLKLVVMSATLEA--EKFQ 79 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~-----~~~~klvlmSATl~~--~~~~ 79 (574)
+.+|+|+|+|.|++.+..+. .+.++++|||||+|. ....+ ....++.++.. ..+.++++||||+.. ..+.
T Consensus 151 ~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~-~~~~~-~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~ 228 (417)
T 2i4i_A 151 GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADR-MLDMG-FEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLA 228 (417)
T ss_dssp CCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHH-HHHTT-CHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHH
T ss_pred CCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhH-hhccC-cHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHH
Confidence 46899999999999998766 489999999999994 11111 12223333331 126789999999953 3444
Q ss_pred -hhhCCCCeEEeCCe---eeceeEEeecCCchhHHHHHHHHHHHHHhc-CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcC
Q 008209 80 -GYFYGAPLMKVPGR---LHPVEIFYTQEPERDYLEAAIRTVVQIHMC-EPSGDILVFLTGEEEIEDACRKITKEITNMG 154 (574)
Q Consensus 80 -~~f~~~~~i~~~gr---~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~-~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~ 154 (574)
.++.+...+.+... ...+...+......+.... +..+... ..++++|||++++++++.+++.|.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~------ 298 (417)
T 2i4i_A 229 RDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSF----LLDLLNATGKDSLTLVFVETKKGADSLEDFLYH------ 298 (417)
T ss_dssp HHHCSSCEEEEEC----CCSSEEEEEEECCGGGHHHH----HHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHH------
T ss_pred HHHcCCCEEEEeCCCCCCccCceEEEEEeccHhHHHH----HHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHH------
Confidence 44443323333211 1123444444343333332 2233332 3578899999999999999999986
Q ss_pred CCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCccee
Q 008209 155 DQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESL 234 (574)
Q Consensus 155 ~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l 234 (574)
.++.+..+||++++++|..+++.|.+|. .+|+|||+++++|+|+|++++||+++.
T Consensus 299 ---~~~~~~~~h~~~~~~~r~~~~~~f~~g~-------~~vlvaT~~~~~Gidip~v~~Vi~~~~--------------- 353 (417)
T 2i4i_A 299 ---EGYACTSIHGDRSQRDREEALHQFRSGK-------SPILVATAVAARGLDISNVKHVINFDL--------------- 353 (417)
T ss_dssp ---TTCCEEEECTTSCHHHHHHHHHHHHHTS-------SCEEEECHHHHTTSCCCCEEEEEESSC---------------
T ss_pred ---CCCCeeEecCCCCHHHHHHHHHHHHcCC-------CCEEEECChhhcCCCcccCCEEEEEcC---------------
Confidence 4578999999999999999999999888 899999999999999999999999887
Q ss_pred eeeeccHhhHHHhcccCCCCC-CCeEEeecccccc
Q 008209 235 LVSPISKASAHQRSGRAGRTQ-PGKCFRLYTEKSF 268 (574)
Q Consensus 235 ~~~~is~~~~~QR~GRaGR~~-~G~~~rl~t~~~~ 268 (574)
|.|..+|.||+|||||.| +|.|+.++++.+.
T Consensus 354 ---p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 385 (417)
T 2i4i_A 354 ---PSDIEEYVHRIGRTGRVGNLGLATSFFNERNI 385 (417)
T ss_dssp ---CSSHHHHHHHHTTBCC--CCEEEEEEECGGGG
T ss_pred ---CCCHHHHHHhcCccccCCCCceEEEEEccccH
Confidence 789999999999999997 5999999998776
No 20
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.94 E-value=1.6e-26 Score=243.99 Aligned_cols=221 Identities=19% Similarity=0.223 Sum_probs=167.8
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCCH---HHHHhhh
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLEA---EKFQGYF 82 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~~---~~~~~~f 82 (574)
..+|+|+|+|.|++.+.... .+.++++||+||+|. ....++ ...+..++. ..++.++++||||++. +.+..++
T Consensus 139 ~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~-~~~~~~-~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~ 216 (400)
T 1s2m_A 139 TVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADK-MLSRDF-KTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHL 216 (400)
T ss_dssp CCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHH-HSSHHH-HHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHC
T ss_pred CCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchH-hhhhch-HHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHc
Confidence 46899999999999887654 589999999999994 233332 334444444 3457899999999964 3344555
Q ss_pred CCCCeEEeCCee--eceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCe
Q 008209 83 YGAPLMKVPGRL--HPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPV 160 (574)
Q Consensus 83 ~~~~~i~~~gr~--~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~ 160 (574)
.....+.+.... ..+..+|......+... .+..+......+++|||++++++++.+++.|.+ .++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~----~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~---------~~~ 283 (400)
T 1s2m_A 217 HKPYEINLMEELTLKGITQYYAFVEERQKLH----CLNTLFSKLQINQAIIFCNSTNRVELLAKKITD---------LGY 283 (400)
T ss_dssp SSCEEESCCSSCBCTTEEEEEEECCGGGHHH----HHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHH---------HTC
T ss_pred CCCeEEEeccccccCCceeEEEEechhhHHH----HHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHh---------cCC
Confidence 433223222221 22444554444443333 222333335678999999999999999999986 356
Q ss_pred EEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeecc
Q 008209 161 KVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPIS 240 (574)
Q Consensus 161 ~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is 240 (574)
.+..+||+++..+|..+++.|.+|. .+|+|||+++++|+|+|++++||+++. |.|
T Consensus 284 ~~~~~~~~~~~~~r~~~~~~f~~g~-------~~vLv~T~~~~~Gidip~~~~Vi~~~~------------------p~s 338 (400)
T 1s2m_A 284 SCYYSHARMKQQERNKVFHEFRQGK-------VRTLVCSDLLTRGIDIQAVNVVINFDF------------------PKT 338 (400)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHTTS-------SSEEEESSCSSSSCCCTTEEEEEESSC------------------CSS
T ss_pred CeEEecCCCCHHHHHHHHHHHhcCC-------CcEEEEcCccccCCCccCCCEEEEeCC------------------CCC
Confidence 7899999999999999999999888 899999999999999999999998876 789
Q ss_pred HhhHHHhcccCCCCC-CCeEEeecccccc
Q 008209 241 KASAHQRSGRAGRTQ-PGKCFRLYTEKSF 268 (574)
Q Consensus 241 ~~~~~QR~GRaGR~~-~G~~~rl~t~~~~ 268 (574)
..+|.||+|||||.| +|.|+.++++.+.
T Consensus 339 ~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~ 367 (400)
T 1s2m_A 339 AETYLHRIGRSGRFGHLGLAINLINWNDR 367 (400)
T ss_dssp HHHHHHHHCBSSCTTCCEEEEEEECGGGH
T ss_pred HHHHHHhcchhcCCCCCceEEEEeccchH
Confidence 999999999999997 6999999998765
No 21
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.94 E-value=4.1e-27 Score=260.08 Aligned_cols=225 Identities=17% Similarity=0.201 Sum_probs=164.3
Q ss_pred cCCCeEEEchHHHH------HHHhcCCCCCCccEEEEecCCCCC-----cchHHHHHHHHHHHhhCCCccEEEEccCCCH
Q 008209 7 VLLGGRYLTDGMLL------REAMTDPLLERYKVIVLDEAHERT-----LATDVLFGLLKEVLKNRPDLKLVVMSATLEA 75 (574)
Q Consensus 7 ~~~~I~~~T~g~Ll------~~l~~~~~L~~~~~vIiDE~HeR~-----~~~d~ll~~lk~~~~~~~~~klvlmSATl~~ 75 (574)
...+|+|+||++|. +.+.....+.++++|||||+|..+ ...+. ..+..+....++.++|+||||++.
T Consensus 135 ~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~--~~l~~l~~~~~~~~ii~lSAT~~~ 212 (591)
T 2v1x_A 135 SELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDY--KALGILKRQFPNASLIGLTATATN 212 (591)
T ss_dssp CCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGG--GGGGHHHHHCTTSEEEEEESSCCH
T ss_pred CCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHH--HHHHHHHHhCCCCcEEEEecCCCH
Confidence 35899999999774 333333357899999999999522 22222 112233335678999999999975
Q ss_pred ---HHHHhhhCCCC-eEEeCCeeeceeEEeecCCchhHHHHHHHHHHHHHhc-CCCCCEEEEcCCHHHHHHHHHHHHHHH
Q 008209 76 ---EKFQGYFYGAP-LMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMC-EPSGDILVFLTGEEEIEDACRKITKEI 150 (574)
Q Consensus 76 ---~~~~~~f~~~~-~i~~~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~-~~~g~iLVFl~~~~ei~~~~~~L~~~~ 150 (574)
+.+.++++... .....+-..| .++|.-..........+..+...... .+++++|||++++++++.+++.|.+
T Consensus 213 ~v~~~i~~~l~~~~~~~~~~~~~r~-nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~-- 289 (591)
T 2v1x_A 213 HVLTDAQKILCIEKCFTFTASFNRP-NLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQN-- 289 (591)
T ss_dssp HHHHHHHHHTTCCSCEEEECCCCCT-TEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhCCCCcEEEecCCCCc-ccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHH--
Confidence 45556665332 2222222112 22222111111112233444444432 3578999999999999999999986
Q ss_pred hhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCC
Q 008209 151 TNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVR 230 (574)
Q Consensus 151 ~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~ 230 (574)
.++.+..+||+|++++|..+++.|..|. .+|||||+++++|||+|+|++||++++
T Consensus 290 -------~g~~~~~~h~~l~~~~R~~~~~~F~~g~-------~~VlVAT~a~~~GID~p~V~~VI~~~~----------- 344 (591)
T 2v1x_A 290 -------LGIHAGAYHANLEPEDKTTVHRKWSANE-------IQVVVATVAFGMGIDKPDVRFVIHHSM----------- 344 (591)
T ss_dssp -------TTCCEEEECTTSCHHHHHHHHHHHHTTS-------SSEEEECTTSCTTCCCSCEEEEEESSC-----------
T ss_pred -------CCCCEEEecCCCCHHHHHHHHHHHHcCC-------CeEEEEechhhcCCCcccccEEEEeCC-----------
Confidence 4678999999999999999999999988 999999999999999999999999887
Q ss_pred cceeeeeeccHhhHHHhcccCCCCC-CCeEEeecccccc
Q 008209 231 VESLLVSPISKASAHQRSGRAGRTQ-PGKCFRLYTEKSF 268 (574)
Q Consensus 231 ~~~l~~~~is~~~~~QR~GRaGR~~-~G~~~rl~t~~~~ 268 (574)
|.|.++|.||+|||||.| +|.|+.+|+..+.
T Consensus 345 -------p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~ 376 (591)
T 2v1x_A 345 -------SKSMENYYQESGRAGRDDMKADCILYYGFGDI 376 (591)
T ss_dssp -------CSSHHHHHHHHTTSCTTSSCEEEEEEECHHHH
T ss_pred -------CCCHHHHHHHhccCCcCCCCceEEEEEChHHH
Confidence 889999999999999998 6999999998765
No 22
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.94 E-value=9.9e-27 Score=248.90 Aligned_cols=222 Identities=18% Similarity=0.144 Sum_probs=162.5
Q ss_pred ccccCCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhhC
Q 008209 4 CFCVLLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFY 83 (574)
Q Consensus 4 ~~~~~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f~ 83 (574)
+..++.-+.+++.|.+.+.++.+..+.++++|||||+|..+...++.++++..... +++.++++||||+.... ..+..
T Consensus 72 v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~-~~~~~~l~~SAT~~~~~-~~~~~ 149 (440)
T 1yks_A 72 HGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-ANESATILMTATPPGTS-DEFPH 149 (440)
T ss_dssp CCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCC-CSSCC
T ss_pred ccCCccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhc-cCCceEEEEeCCCCchh-hhhhh
Confidence 34455667888999999999988889999999999999876666677777776654 45799999999985431 11111
Q ss_pred -CCCeEEeCCeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEE
Q 008209 84 -GAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKV 162 (574)
Q Consensus 84 -~~~~i~~~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v 162 (574)
..++. .+...+........ +..+. +.++++|||||++++++.+++.|.+ .++.+
T Consensus 150 ~~~~~~-------~~~~~~~~~~~~~~----~~~l~-----~~~~~~lVF~~s~~~a~~l~~~L~~---------~~~~v 204 (440)
T 1yks_A 150 SNGEIE-------DVQTDIPSEPWNTG----HDWIL-----ADKRPTAWFLPSIRAANVMAASLRK---------AGKSV 204 (440)
T ss_dssp CSSCEE-------EEECCCCSSCCSSS----CHHHH-----HCCSCEEEECSCHHHHHHHHHHHHH---------TTCCE
T ss_pred cCCCee-------EeeeccChHHHHHH----HHHHH-----hcCCCEEEEeCCHHHHHHHHHHHHH---------cCCCE
Confidence 11221 11111111111111 11121 2378999999999999999999987 35779
Q ss_pred EEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceee-cCCCCcceeeeeeccH
Q 008209 163 VPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVY-NPRVRVESLLVSPISK 241 (574)
Q Consensus 163 ~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y-~~~~~~~~l~~~~is~ 241 (574)
..+|| ++|.++++.|.+|. .+|+|||+++|+|||+| +++|||+|+.+.++| ++..++......|.+.
T Consensus 205 ~~lhg----~~R~~~~~~F~~g~-------~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~ 272 (440)
T 1yks_A 205 VVLNR----KTFEREYPTIKQKK-------PDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISA 272 (440)
T ss_dssp EECCS----SSCC--------CC-------CSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCH
T ss_pred EEecc----hhHHHHHhhhcCCC-------ceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCH
Confidence 99999 46889999999998 99999999999999999 999999999998887 5555677777889999
Q ss_pred hhHHHhcccCCCCC--CCeEEeecc
Q 008209 242 ASAHQRSGRAGRTQ--PGKCFRLYT 264 (574)
Q Consensus 242 ~~~~QR~GRaGR~~--~G~~~rl~t 264 (574)
++|.||+|||||.+ +|.||.+|+
T Consensus 273 ~~~~Qr~GR~GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 273 SSAAQRRGRIGRNPNRDGDSYYYSE 297 (440)
T ss_dssp HHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred HHHHHhccccCCCCCCCceEEEEec
Confidence 99999999999973 799999985
No 23
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.94 E-value=7.4e-27 Score=247.42 Aligned_cols=222 Identities=16% Similarity=0.239 Sum_probs=165.4
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCCHHH--H-Hhhh
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLEAEK--F-QGYF 82 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~~~~--~-~~~f 82 (574)
+.+|+|+|+|.|++.+.... .+.++++||+||+|. ..+.++. ..+..++. ..++.++|+||||+..+. + ..++
T Consensus 155 ~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~-~~~~~~~-~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 232 (410)
T 2j0s_A 155 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADE-MLNKGFK-EQIYDVYRYLPPATQVVLISATLPHEILEMTNKFM 232 (410)
T ss_dssp CCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH-HTSTTTH-HHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTC
T ss_pred CCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHH-HHhhhhH-HHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHc
Confidence 46899999999999987754 588999999999994 2222222 22333333 446889999999996532 2 3444
Q ss_pred CCCCeEEeCCee---eceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCC
Q 008209 83 YGAPLMKVPGRL---HPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGP 159 (574)
Q Consensus 83 ~~~~~i~~~gr~---~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~ 159 (574)
.+...+.+.... ..+..+|......+..... +..+......+++|||++++++++.+++.|.+ .+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~---l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~---------~~ 300 (410)
T 2j0s_A 233 TDPIRILVKRDELTLEGIKQFFVAVEREEWKFDT---LCDLYDTLTITQAVIFCNTKRKVDWLTEKMRE---------AN 300 (410)
T ss_dssp SSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHH---HHHHHHHHTSSEEEEECSSHHHHHHHHHHHHH---------TT
T ss_pred CCCEEEEecCccccCCCceEEEEEeCcHHhHHHH---HHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHh---------CC
Confidence 433223332221 2244444443333322222 23333333567999999999999999999986 45
Q ss_pred eEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeec
Q 008209 160 VKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPI 239 (574)
Q Consensus 160 ~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~i 239 (574)
+.+..+||++++.+|..+++.|.+|. .+|+|||+++++|+|+|++++||+++. |.
T Consensus 301 ~~~~~~h~~~~~~~r~~~~~~f~~g~-------~~vlv~T~~~~~Gidi~~v~~Vi~~~~------------------p~ 355 (410)
T 2j0s_A 301 FTVSSMHGDMPQKERESIMKEFRSGA-------SRVLISTDVWARGLDVPQVSLIINYDL------------------PN 355 (410)
T ss_dssp CCCEEECTTSCHHHHHHHHHHHHHTS-------SCEEEECGGGSSSCCCTTEEEEEESSC------------------CS
T ss_pred CceEEeeCCCCHHHHHHHHHHHHCCC-------CCEEEECChhhCcCCcccCCEEEEECC------------------CC
Confidence 67899999999999999999999888 899999999999999999999999886 78
Q ss_pred cHhhHHHhcccCCCCC-CCeEEeecccccc
Q 008209 240 SKASAHQRSGRAGRTQ-PGKCFRLYTEKSF 268 (574)
Q Consensus 240 s~~~~~QR~GRaGR~~-~G~~~rl~t~~~~ 268 (574)
|.++|.||+|||||.| +|.|+.++++.+.
T Consensus 356 s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 385 (410)
T 2j0s_A 356 NRELYIHRIGRSGRYGRKGVAINFVKNDDI 385 (410)
T ss_dssp SHHHHHHHHTTSSGGGCCEEEEEEEEGGGH
T ss_pred CHHHHHHhcccccCCCCceEEEEEecHHHH
Confidence 8999999999999997 6999999998764
No 24
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.94 E-value=1.1e-26 Score=247.97 Aligned_cols=219 Identities=19% Similarity=0.180 Sum_probs=169.3
Q ss_pred ccCCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhhC-C
Q 008209 6 CVLLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFY-G 84 (574)
Q Consensus 6 ~~~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f~-~ 84 (574)
.+..-+.++|.|.+.+.+..++.+.++++|||||+|.++...+..+..++... .+++.++|+||||+... +..+.. .
T Consensus 68 ~~~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~-~~~~~~~~ 145 (431)
T 2v6i_A 68 TGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRV-SMGDAGAIFMTATPPGT-TEAFPPSN 145 (431)
T ss_dssp -CCCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHH-HTTSCEEEEEESSCTTC-CCSSCCCS
T ss_pred CCCceEEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHh-hCCCCcEEEEeCCCCcc-hhhhcCCC
Confidence 34677899999999999988888999999999999998777777777777765 34689999999999642 111111 2
Q ss_pred CCeEEeCCeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEE
Q 008209 85 APLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVP 164 (574)
Q Consensus 85 ~~~i~~~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~ 164 (574)
.|++.+++. +....... ++.... ..++++|||+|++++++.+++.|.+ .+..+..
T Consensus 146 ~~i~~~~~~-------~~~~~~~~--------~~~~l~-~~~~~~lVF~~~~~~~~~l~~~L~~---------~~~~v~~ 200 (431)
T 2v6i_A 146 SPIIDEETR-------IPDKAWNS--------GYEWIT-EFDGRTVWFVHSIKQGAEIGTCLQK---------AGKKVLY 200 (431)
T ss_dssp SCCEEEECC-------CCSSCCSS--------CCHHHH-SCSSCEEEECSSHHHHHHHHHHHHH---------TTCCEEE
T ss_pred Cceeecccc-------CCHHHHHH--------HHHHHH-cCCCCEEEEeCCHHHHHHHHHHHHH---------cCCeEEE
Confidence 233332211 11111011 111112 3478999999999999999999987 3567999
Q ss_pred cCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhH
Q 008209 165 LYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASA 244 (574)
Q Consensus 165 lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~ 244 (574)
+||+ +|.++++.|.+|. .+|+|||+++|+|||+| +.+|||+|..+.++|| ..++......|.+.++|
T Consensus 201 lhg~----~r~~~~~~f~~g~-------~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d-~~~~vi~~~~p~~~~~~ 267 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSEK-------WDFVITTDISEMGANFK-ADRVIDPRKTIKPILL-DGRVSMQGPIAITPASA 267 (431)
T ss_dssp ESTT----THHHHTTHHHHSC-------CSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEE-TTEEEEEEEEECCHHHH
T ss_pred eCCc----cHHHHHHhhcCCC-------CeEEEECchHHcCcccC-CcEEEecCccccceec-ccceeecccccCCHHHH
Confidence 9997 5778899999888 99999999999999999 9999999999999999 67777788899999999
Q ss_pred HHhcccCCCCCC-CeEEeecc
Q 008209 245 HQRSGRAGRTQP-GKCFRLYT 264 (574)
Q Consensus 245 ~QR~GRaGR~~~-G~~~rl~t 264 (574)
.||+||+||.++ +.|+.+|.
T Consensus 268 ~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 268 AQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp HHHHTTSSCCTTCCCCEEEEC
T ss_pred HHhhhccCCCCCCCCeEEEEc
Confidence 999999999984 44555554
No 25
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.94 E-value=7.5e-26 Score=237.77 Aligned_cols=220 Identities=15% Similarity=0.227 Sum_probs=168.2
Q ss_pred CCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCC--H-HHHHhhhC
Q 008209 9 LGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLE--A-EKFQGYFY 83 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~--~-~~~~~~f~ 83 (574)
.+|+|+|++.|++.+..+. .+.++++||+||+|...-..++.-. +..++. ..++.++|+||||+. . +.+..++.
T Consensus 129 ~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~-~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~ 207 (391)
T 1xti_A 129 PHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRD-VQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQ 207 (391)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHH-HHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCS
T ss_pred CCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHH-HHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcC
Confidence 5899999999999887765 5899999999999953322333322 333333 445889999999995 3 34445665
Q ss_pred CCCeEEeCCee----eceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCC
Q 008209 84 GAPLMKVPGRL----HPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGP 159 (574)
Q Consensus 84 ~~~~i~~~gr~----~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~ 159 (574)
+...+.+.... ..+..+|......+.... +..+....+++++|||++++++++.+++.|.+ .+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~---------~~ 274 (391)
T 1xti_A 208 DPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRK----LFDLLDVLEFNQVVIFVKSVQRCIALAQLLVE---------QN 274 (391)
T ss_dssp SCEEEECCCCCCCCCTTCEEEEEECCGGGHHHH----HHHHHHHSCCSEEEEECSCHHHHHHHHHHHHH---------TT
T ss_pred CCeEEEecCccccCcccceEEEEEcCchhHHHH----HHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHh---------CC
Confidence 44344443321 224455555444444332 22333334678999999999999999999986 35
Q ss_pred eEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeec
Q 008209 160 VKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPI 239 (574)
Q Consensus 160 ~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~i 239 (574)
+.+..+||+++.++|..+++.|.+|. .+|+|||+++++|+|+|++++||+++. |.
T Consensus 275 ~~~~~~~~~~~~~~r~~~~~~f~~~~-------~~vlv~T~~~~~Gidi~~~~~Vi~~~~------------------p~ 329 (391)
T 1xti_A 275 FPAIAIHRGMPQEERLSRYQQFKDFQ-------RRILVATNLFGRGMDIERVNIAFNYDM------------------PE 329 (391)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHTTC-------CSEEEESCCCSSCBCCTTEEEEEESSC------------------CS
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCC-------CcEEEECChhhcCCCcccCCEEEEeCC------------------CC
Confidence 67899999999999999999999888 899999999999999999999998886 78
Q ss_pred cHhhHHHhcccCCCCC-CCeEEeeccccc
Q 008209 240 SKASAHQRSGRAGRTQ-PGKCFRLYTEKS 267 (574)
Q Consensus 240 s~~~~~QR~GRaGR~~-~G~~~rl~t~~~ 267 (574)
|..+|.||+|||||.| +|.|+.+++..+
T Consensus 330 s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 358 (391)
T 1xti_A 330 DSDTYLHRVARAGRFGTKGLAITFVSDEN 358 (391)
T ss_dssp SHHHHHHHHCBCSSSCCCCEEEEEECSHH
T ss_pred CHHHHHHhcccccCCCCceEEEEEEcccc
Confidence 9999999999999997 699999998754
No 26
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.94 E-value=5.9e-27 Score=260.83 Aligned_cols=293 Identities=17% Similarity=0.190 Sum_probs=195.7
Q ss_pred CCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhC-CCccEEEEccCCC-HHHHHhhhCCCC
Q 008209 9 LGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR-PDLKLVVMSATLE-AEKFQGYFYGAP 86 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~-~~~klvlmSATl~-~~~~~~~f~~~~ 86 (574)
.+++++|.+++ +.+..+++|||||+|++ .+.++...+.+.+...+ ++++++++|||.+ .+.+....+...
T Consensus 224 ~~il~~T~e~~-------~l~~~v~lvVIDEaH~l-~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~~~~ 295 (677)
T 3rc3_A 224 ASHVSCTVEMC-------SVTTPYEVAVIDEIQMI-RDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEV 295 (677)
T ss_dssp CSEEEEEGGGC-------CSSSCEEEEEECSGGGG-GCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHTCCE
T ss_pred cceeEecHhHh-------hhcccCCEEEEecceec-CCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcCCce
Confidence 44555555332 35688999999999975 44555555544444444 6789999999963 334444333221
Q ss_pred eEEeCCeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcC
Q 008209 87 LMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLY 166 (574)
Q Consensus 87 ~i~~~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lh 166 (574)
.+....+..+.. +...... .......|+ +||++++++++.+++.|.+ .++.+.++|
T Consensus 296 ~v~~~~r~~~l~--~~~~~l~------------~l~~~~~g~-iIf~~s~~~ie~la~~L~~---------~g~~v~~lH 351 (677)
T 3rc3_A 296 EVRDYKRLTPIS--VLDHALE------------SLDNLRPGD-CIVCFSKNDIYSVSRQIEI---------RGLESAVIY 351 (677)
T ss_dssp EEEECCCSSCEE--ECSSCCC------------SGGGCCTTE-EEECSSHHHHHHHHHHHHH---------TTCCCEEEC
T ss_pred EEEEeeecchHH--HHHHHHH------------HHHhcCCCC-EEEEcCHHHHHHHHHHHHh---------cCCCeeeee
Confidence 121112222222 2111100 011123444 6778889999999999986 357899999
Q ss_pred CCCCHHHHhhhcCCCCC--CCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhH
Q 008209 167 STLPPAMQQKIFEPAPP--PSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASA 244 (574)
Q Consensus 167 s~l~~~~q~~v~~~~~~--g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~ 244 (574)
|+|++++|..+++.|.+ |. ++|||||+++|+|||+ +|++|||+|+.|. .||+..+. ...|+|.++|
T Consensus 352 G~L~~~~R~~~~~~F~~~~g~-------~~VLVATdi~e~GlDi-~v~~VI~~~~~k~-~~~~~G~~---~~~p~s~~~~ 419 (677)
T 3rc3_A 352 GSLPPGTKLAQAKKFNDPNDP-------CKILVATDAIGMGLNL-SIRRIIFYSLIKP-SINEKGER---ELEPITTSQA 419 (677)
T ss_dssp TTSCHHHHHHHHHHHHCTTSS-------CCEEEECGGGGSSCCC-CBSEEEESCSBC---------------CBCCHHHH
T ss_pred ccCCHHHHHHHHHHHHccCCC-------eEEEEeCcHHHCCcCc-CccEEEECCcccc-ccccCCcc---ccccCCHHHH
Confidence 99999999888888876 66 9999999999999999 8999999999988 88887433 3669999999
Q ss_pred HHhcccCCCCC----CCeEEeecccc--ccccccCCCCcchhccCCchhhHHHHhhcCCCCccccCCCCCCcHHHHHHHH
Q 008209 245 HQRSGRAGRTQ----PGKCFRLYTEK--SFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRAL 318 (574)
Q Consensus 245 ~QR~GRaGR~~----~G~~~rl~t~~--~~~~~l~~~~~pei~~~~l~~~~L~l~~~~~~~~~~~~~l~~P~~~~l~~al 318 (574)
.||+|||||.+ +|.||++++++ .+ ..+.....|+|.+.++....++++.++..- +...+...+
T Consensus 420 ~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~-~~~~~~~~~~i~~~~l~p~~~~l~~~~~~l----------~~~~l~ell 488 (677)
T 3rc3_A 420 LQIAGRAGRFSSRFKEGEVTTMNHEDLSLL-KEILKRPVDPIRAAGLHPTAEQIEMFAYHL----------PDATLSNLI 488 (677)
T ss_dssp HHHHTTBTCTTSSCSSEEEEESSTTHHHHH-HHHHHSCCCCCCCEEECCCHHHHHHHHHHS----------TTSCHHHHH
T ss_pred HHHhcCCCCCCCCCCCEEEEEEecchHHHH-HHHHhcCcchhhhccCCChHHHHHHHhccC----------CcchHHHHH
Confidence 99999999999 58999999876 44 456777889999999999999988877211 112255566
Q ss_pred HHHHHcCCccCCCC------cChhhhhhccCCCCHHHHHHHHhc
Q 008209 319 EVLNYLGALDDDGN------LTEMGEKMSEFPLDPQMSKMLVES 356 (574)
Q Consensus 319 ~~L~~lgald~~~~------lT~lG~~~~~lpl~p~~~~~ll~~ 356 (574)
+.+..++.+|.... ...++..+..+|++...--.+..+
T Consensus 489 ~~l~~~~~vd~~f~~~~l~~~~~la~~l~~~~L~~~~~~~f~~a 532 (677)
T 3rc3_A 489 DIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTA 532 (677)
T ss_dssp HHHHHHCBCCTTEEECCCHHHHHHHHHTTTSCCCHHHHHHHHHS
T ss_pred HHHHHhhcccchhhccchHHHHHHHHHHhhCCCCHHHHhheEeC
Confidence 77777777764321 234556666667766665444444
No 27
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.94 E-value=5.2e-26 Score=251.25 Aligned_cols=230 Identities=15% Similarity=0.193 Sum_probs=167.1
Q ss_pred CCCeEEEchHHHHHHHhcC--CCCCCccEEEEecCCC-----CCcchHHHHHHHHHHHh-hCCCccEEEEccCCC--HHH
Q 008209 8 LLGGRYLTDGMLLREAMTD--PLLERYKVIVLDEAHE-----RTLATDVLFGLLKEVLK-NRPDLKLVVMSATLE--AEK 77 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~--~~L~~~~~vIiDE~He-----R~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~--~~~ 77 (574)
..+|+|+|||.|++.+... ..++++++|||||+|. +....+.++..+..... ..++.|+|+||||++ ...
T Consensus 201 ~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~ 280 (563)
T 3i5x_A 201 RPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQK 280 (563)
T ss_dssp CCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHH
T ss_pred CCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHH
Confidence 4689999999999988754 3588999999999993 22223334444433322 234789999999996 345
Q ss_pred HHhhhCCCC-eEEeC--Ce-----eeceeEEeec-CCchhHHHHHHHHHHHHHh-cCCCCCEEEEcCCHHHHHHHHHHHH
Q 008209 78 FQGYFYGAP-LMKVP--GR-----LHPVEIFYTQ-EPERDYLEAAIRTVVQIHM-CEPSGDILVFLTGEEEIEDACRKIT 147 (574)
Q Consensus 78 ~~~~f~~~~-~i~~~--gr-----~~~v~~~y~~-~~~~~~~~~~~~~~~~i~~-~~~~g~iLVFl~~~~ei~~~~~~L~ 147 (574)
+...+...+ .+.+. .. ...+...+.. ....+.....+..+..... ..+++++|||++++.+++.+++.|.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~ 360 (563)
T 3i5x_A 281 LANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILK 360 (563)
T ss_dssp HTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHH
T ss_pred HHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHH
Confidence 554443332 22221 11 1112222222 1222333333444443332 2567899999999999999999998
Q ss_pred HHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecC
Q 008209 148 KEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNP 227 (574)
Q Consensus 148 ~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~ 227 (574)
+... .++.+..+||++++.+|..+++.|..|. .+|+|||+++++|||+|+|++||+++.
T Consensus 361 ~~~~------~~~~v~~~h~~~~~~~R~~~~~~f~~g~-------~~vLvaT~~~~~GiDip~v~~VI~~~~-------- 419 (563)
T 3i5x_A 361 NEFK------KDLPILEFHGKITQNKRTSLVKRFKKDE-------SGILVCTDVGARGMDFPNVHEVLQIGV-------- 419 (563)
T ss_dssp HHHT------TTSCEEEESTTSCHHHHHHHHHHHHHCS-------SEEEEECGGGTSSCCCTTCCEEEEESC--------
T ss_pred Hhcc------CCceEEEecCCCCHHHHHHHHHHHhcCC-------CCEEEEcchhhcCCCcccCCEEEEECC--------
Confidence 7542 3577999999999999999999999988 999999999999999999999998886
Q ss_pred CCCcceeeeeeccHhhHHHhcccCCCCC-CCeEEeecccccc
Q 008209 228 RVRVESLLVSPISKASAHQRSGRAGRTQ-PGKCFRLYTEKSF 268 (574)
Q Consensus 228 ~~~~~~l~~~~is~~~~~QR~GRaGR~~-~G~~~rl~t~~~~ 268 (574)
|.|..+|.||+|||||.| +|.|+.++++.+.
T Consensus 420 ----------p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~ 451 (563)
T 3i5x_A 420 ----------PSELANYIHRIGRTARSGKEGSSVLFICKDEL 451 (563)
T ss_dssp ----------CSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGH
T ss_pred ----------CCchhhhhhhcCccccCCCCceEEEEEchhHH
Confidence 789999999999999998 6999999987654
No 28
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.93 E-value=2.6e-27 Score=256.52 Aligned_cols=228 Identities=17% Similarity=0.185 Sum_probs=54.5
Q ss_pred CCCeEEEchHHHHHHHhcCCC--CCCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCCHH--HHH-hh
Q 008209 8 LLGGRYLTDGMLLREAMTDPL--LERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLEAE--KFQ-GY 81 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~~--L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~~~--~~~-~~ 81 (574)
..+|+|+|+|.|++.+.+.+. +.++++|||||+|.-.-...+.. .+..+.. ..++.++|+||||+..+ .+. .+
T Consensus 210 ~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~-~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 288 (479)
T 3fmp_B 210 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQD-QSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKV 288 (479)
T ss_dssp CCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHH-HHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHH
T ss_pred CCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHH-HHHHHHhhCCccceEEEEeCCCCHHHHHHHHHH
Confidence 358999999999999977553 58999999999994211112222 2222222 45689999999999643 343 44
Q ss_pred hCCCCeEEeCCeeec---eeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCC
Q 008209 82 FYGAPLMKVPGRLHP---VEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVG 158 (574)
Q Consensus 82 f~~~~~i~~~gr~~~---v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~ 158 (574)
+.+...+.+...... +...|...+..+. ....+..+......+++||||++++.++.+++.|.+ .
T Consensus 289 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~---------~ 356 (479)
T 3fmp_B 289 VPDPNVIKLKREEETLDTIKQYYVLCSSRDE---KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSK---------E 356 (479)
T ss_dssp SSSEEEEEEC----------------------------------------------------------------------
T ss_pred cCCCeEEeccccccCcCCceEEEEEeCCHHH---HHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHh---------C
Confidence 544444544433211 2223322222111 222333444334578999999999999999999976 3
Q ss_pred CeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeee
Q 008209 159 PVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP 238 (574)
Q Consensus 159 ~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~ 238 (574)
+..+..+||++++.+|..+++.|..|. .+|+|||+++++|||+|++++||++++.....+ +
T Consensus 357 ~~~v~~lh~~~~~~~R~~~~~~f~~g~-------~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~------------~ 417 (479)
T 3fmp_B 357 GHQVALLSGEMMVEQRAAVIERFREGK-------EKVLVTTNVCARGIDVEQVSVVINFDLPVDKDG------------N 417 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccEEEecCCCCHHHHHHHHHHHHcCC-------CcEEEEccccccCCccccCCEEEEecCCCCCcc------------C
Confidence 577899999999999999999999998 999999999999999999999999886222111 2
Q ss_pred ccHhhHHHhcccCCCCCC-CeEEeeccccc
Q 008209 239 ISKASAHQRSGRAGRTQP-GKCFRLYTEKS 267 (574)
Q Consensus 239 is~~~~~QR~GRaGR~~~-G~~~rl~t~~~ 267 (574)
.|..+|.||+|||||.+. |.|+.+++...
T Consensus 418 ~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 418 PDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp ------------------------------
T ss_pred CCHHHHHHHhcccccCCCCceEEEEEcCcc
Confidence 577899999999999885 99999998654
No 29
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.2e-26 Score=267.60 Aligned_cols=237 Identities=18% Similarity=0.205 Sum_probs=176.0
Q ss_pred cCCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCC-----CCCcchHHHHHHHHHHHhhCCCccEEEEccCC-CHHHHH
Q 008209 7 VLLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAH-----ERTLATDVLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQ 79 (574)
Q Consensus 7 ~~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~H-----eR~~~~d~ll~~lk~~~~~~~~~klvlmSATl-~~~~~~ 79 (574)
...+|+|||+|+|.+.+..+. .+.++++|||||+| +|+...+.++.. .+++.++|+||||+ +...|+
T Consensus 167 ~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~------l~~~~~il~LSATi~n~~e~a 240 (1010)
T 2xgj_A 167 PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIIL------LPDKVRYVFLSATIPNAMEFA 240 (1010)
T ss_dssp TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHH------SCTTCEEEEEECCCTTHHHHH
T ss_pred CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHh------cCCCCeEEEEcCCCCCHHHHH
Confidence 357899999999999887654 68999999999999 455444443332 34689999999999 788888
Q ss_pred hhhC-----CCCeEEeCCeeeceeEEeecCC----------ch-----hHH-----------------------------
Q 008209 80 GYFY-----GAPLMKVPGRLHPVEIFYTQEP----------ER-----DYL----------------------------- 110 (574)
Q Consensus 80 ~~f~-----~~~~i~~~gr~~~v~~~y~~~~----------~~-----~~~----------------------------- 110 (574)
+|+. ++.++..+++..|+..++.... .. .+.
T Consensus 241 ~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~ 320 (1010)
T 2xgj_A 241 EWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKG 320 (1010)
T ss_dssp HHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC----------------------
T ss_pred HHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhccccccccccccccccccc
Confidence 8874 4556777888888776654321 00 000
Q ss_pred -------HHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHH------------------hhcCCCCC-------
Q 008209 111 -------EAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEI------------------TNMGDQVG------- 158 (574)
Q Consensus 111 -------~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~------------------~~~~~~~~------- 158 (574)
...+..++........+++|||++++.+++.++..|.+.- ..+.....
T Consensus 321 ~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~ 400 (1010)
T 2xgj_A 321 GSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKH 400 (1010)
T ss_dssp --------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHH
T ss_pred ccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHH
Confidence 1112234444333456799999999999999998886410 00000000
Q ss_pred -----CeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcce
Q 008209 159 -----PVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVES 233 (574)
Q Consensus 159 -----~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~ 233 (574)
...|..+||++++.+|..+++.|.+|. .+|||||+++++|||+|++++||+. ...||...
T Consensus 401 l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~-------ikVLVAT~~la~GIDiP~~~vVI~~----~~kfd~~~---- 465 (1010)
T 2xgj_A 401 ILPLLRRGIGIHHSGLLPILKEVIEILFQEGF-------LKVLFATETFSIGLNMPAKTVVFTS----VRKWDGQQ---- 465 (1010)
T ss_dssp HHHHHHHTEEEESTTSCHHHHHHHHHHHHTTC-------CSEEEEEGGGGGSTTCCBSEEEESC----SEEECSSC----
T ss_pred HHHHHhCCeeEECCCCCHHHHHHHHHHHhcCC-------CcEEEEehHhhccCCCCCceEEEeC----CcccCCcC----
Confidence 123889999999999999999999998 9999999999999999999999963 34566543
Q ss_pred eeeeeccHhhHHHhcccCCCCC---CCeEEeecccc
Q 008209 234 LLVSPISKASAHQRSGRAGRTQ---PGKCFRLYTEK 266 (574)
Q Consensus 234 l~~~~is~~~~~QR~GRaGR~~---~G~~~rl~t~~ 266 (574)
..|.|.++|.||+|||||.| .|.||.++++.
T Consensus 466 --~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 466 --FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp --EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred --CccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 35899999999999999998 49999999865
No 30
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.93 E-value=4.4e-26 Score=249.07 Aligned_cols=222 Identities=16% Similarity=0.237 Sum_probs=166.2
Q ss_pred CCCeEEEchHHHHHHHhc-CCCCCCccEEEEecCCCC---CcchHHHHHHHHHHHhhCCCccEEEEccCCCHH---HHHh
Q 008209 8 LLGGRYLTDGMLLREAMT-DPLLERYKVIVLDEAHER---TLATDVLFGLLKEVLKNRPDLKLVVMSATLEAE---KFQG 80 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~-~~~L~~~~~vIiDE~HeR---~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~---~~~~ 80 (574)
..+|+|+||+.|+..... .-...++++|||||+|.. +.+..-.+..+..+....++.++++||||++.. .+.+
T Consensus 115 ~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~ 194 (523)
T 1oyw_A 115 QIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194 (523)
T ss_dssp CCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHH
T ss_pred CCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHH
Confidence 378999999998532111 112478999999999953 333333334444555567889999999999754 4555
Q ss_pred hhC-CCCeEEeCCeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCC
Q 008209 81 YFY-GAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGP 159 (574)
Q Consensus 81 ~f~-~~~~i~~~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~ 159 (574)
+++ ..+.+.+.+...| .+.|......+... .+.......+++++|||++++++++.+++.|.+ .+
T Consensus 195 ~l~~~~~~~~~~~~~r~-~l~~~v~~~~~~~~----~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~---------~g 260 (523)
T 1oyw_A 195 LLGLNDPLIQISSFDRP-NIRYMLMEKFKPLD----QLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQS---------KG 260 (523)
T ss_dssp HHTCCSCEEEECCCCCT-TEEEEEEECSSHHH----HHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHH---------TT
T ss_pred HhCCCCCeEEeCCCCCC-ceEEEEEeCCCHHH----HHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHH---------CC
Confidence 554 3455555544333 22222222223333 233333334678999999999999999999987 45
Q ss_pred eEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeec
Q 008209 160 VKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPI 239 (574)
Q Consensus 160 ~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~i 239 (574)
+.+..+||++++++|..+++.|..|. .+|||||+++++|||+|+|++||++|. |.
T Consensus 261 ~~~~~~h~~l~~~~R~~~~~~f~~g~-------~~vlVaT~a~~~GiD~p~v~~VI~~~~------------------p~ 315 (523)
T 1oyw_A 261 ISAAAYHAGLENNVRADVQEKFQRDD-------LQIVVATVAFGMGINKPNVRFVVHFDI------------------PR 315 (523)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHTTS-------CSEEEECTTSCTTTCCTTCCEEEESSC------------------CS
T ss_pred CCEEEecCCCCHHHHHHHHHHHHcCC-------CeEEEEechhhCCCCccCccEEEEECC------------------CC
Confidence 77999999999999999999999988 999999999999999999999999887 88
Q ss_pred cHhhHHHhcccCCCCC-CCeEEeecccccc
Q 008209 240 SKASAHQRSGRAGRTQ-PGKCFRLYTEKSF 268 (574)
Q Consensus 240 s~~~~~QR~GRaGR~~-~G~~~rl~t~~~~ 268 (574)
|.++|.||+|||||.| +|.|+.+|+..+.
T Consensus 316 s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~ 345 (523)
T 1oyw_A 316 NIESYYQETGRAGRDGLPAEAMLFYDPADM 345 (523)
T ss_dssp SHHHHHHHHTTSCTTSSCEEEEEEECHHHH
T ss_pred CHHHHHHHhccccCCCCCceEEEEeCHHHH
Confidence 9999999999999998 6999999998765
No 31
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.93 E-value=1.1e-26 Score=224.02 Aligned_cols=170 Identities=19% Similarity=0.321 Sum_probs=148.5
Q ss_pred HHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEE
Q 008209 117 VVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIV 196 (574)
Q Consensus 117 ~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvi 196 (574)
+.+++...+++++|||++++.+++.+++.|.+ .++.+.++||++++.+|..+++.|++|. .+|+
T Consensus 22 l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~---------~~~~~~~lhg~~~~~~r~~~~~~f~~g~-------~~vl 85 (212)
T 3eaq_A 22 LSDLLYVASPDRAMVFTRTKAETEEIAQGLLR---------LGHPAQALHGDLSQGERERVLGAFRQGE-------VRVL 85 (212)
T ss_dssp HHHHHHHHCCSCEEEECSSHHHHHHHHHHHHH---------HTCCEEEECSSSCHHHHHHHHHHHHSSS-------CCEE
T ss_pred HHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHH---------cCCCEEEEECCCCHHHHHHHHHHHHCCC-------CeEE
Confidence 34444445688999999999999999999986 3577999999999999999999999988 9999
Q ss_pred EecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC-CCeEEeeccccc--------
Q 008209 197 VSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ-PGKCFRLYTEKS-------- 267 (574)
Q Consensus 197 vaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~-~G~~~rl~t~~~-------- 267 (574)
|||+++++|+|+|++++||++|+ |.|.++|.||+|||||.| +|.||.+|+..+
T Consensus 86 vaT~~~~~Gidi~~v~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~ 147 (212)
T 3eaq_A 86 VATDVAARGLDIPQVDLVVHYRL------------------PDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALE 147 (212)
T ss_dssp EECTTTTCSSSCCCBSEEEESSC------------------CSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHH
T ss_pred EecChhhcCCCCccCcEEEECCC------------------CcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHH
Confidence 99999999999999999999987 889999999999999998 799999999876
Q ss_pred ------cccccCCCCcchhccCCchhhHHHHhhcCCCCcccc-----CCCCCCcHHHHHHHHHHH
Q 008209 268 ------FNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHF-----DFMDPPAPETLMRALEVL 321 (574)
Q Consensus 268 ------~~~~l~~~~~pei~~~~l~~~~L~l~~~~~~~~~~~-----~~l~~P~~~~l~~al~~L 321 (574)
+ ..+.....|||.+..+..+++.++.++..+...| +++++|+++.+..|+..|
T Consensus 148 ~~~~~~~-~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l 211 (212)
T 3eaq_A 148 RAVGRRF-KRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALL 211 (212)
T ss_dssp HHHSSCC-EECCCCCHHHHHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhcCcC-eecCCCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 4 4567778899999999999999999887655555 678889999999998765
No 32
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.93 E-value=1.2e-25 Score=250.81 Aligned_cols=221 Identities=18% Similarity=0.194 Sum_probs=170.7
Q ss_pred cccCCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhhC-
Q 008209 5 FCVLLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFY- 83 (574)
Q Consensus 5 ~~~~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f~- 83 (574)
..++.-+.++|.|.+.+.+..++.+.++++|||||+|+.+...+..+..++.... +++.++|+||||+.... ..+..
T Consensus 306 ~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~-~~~~~vl~~SAT~~~~i-~~~~~~ 383 (673)
T 2wv9_A 306 HSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVE-AGEAAAIFMTATPPGTS-DPFPDT 383 (673)
T ss_dssp CCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCC-CSSCCC
T ss_pred CCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhcc-ccCCcEEEEcCCCChhh-hhhccc
Confidence 3455778899999999999998899999999999999987777788888877654 35799999999996331 11111
Q ss_pred CCCeEEeCCeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEE
Q 008209 84 GAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVV 163 (574)
Q Consensus 84 ~~~~i~~~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~ 163 (574)
..|+..+... +........ +..+ . ..++++|||||++++++.+++.|.+ .++.+.
T Consensus 384 ~~~i~~v~~~-------~~~~~~~~~----l~~l----~-~~~~~~lVF~~s~~~~e~la~~L~~---------~g~~v~ 438 (673)
T 2wv9_A 384 NSPVHDVSSE-------IPDRAWSSG----FEWI----T-DYAGKTVWFVASVKMSNEIAQCLQR---------AGKRVI 438 (673)
T ss_dssp SSCEEEEECC-------CCSSCCSSC----CHHH----H-SCCSCEEEECSSHHHHHHHHHHHHT---------TTCCEE
T ss_pred CCceEEEeee-------cCHHHHHHH----HHHH----H-hCCCCEEEEECCHHHHHHHHHHHHh---------CCCeEE
Confidence 2233222211 111111111 1111 1 3588999999999999999999976 357799
Q ss_pred EcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCccccee--ecCCCCcceeeeeeccH
Q 008209 164 PLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKV--YNPRVRVESLLVSPISK 241 (574)
Q Consensus 164 ~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~--y~~~~~~~~l~~~~is~ 241 (574)
.+||. +|.++++.|++|. .+|||||+++|+|||+| +++|||+|....+. ||+..++..+...|.|.
T Consensus 439 ~lHg~----eR~~v~~~F~~g~-------~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~ 506 (673)
T 2wv9_A 439 QLNRK----SYDTEYPKCKNGD-------WDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITS 506 (673)
T ss_dssp EECSS----SHHHHGGGGGTCC-------CSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCH
T ss_pred EeChH----HHHHHHHHHHCCC-------ceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCH
Confidence 99993 7888999999988 99999999999999999 99999999766544 67776666667789999
Q ss_pred hhHHHhcccCCCC-C-CCeEEeecc
Q 008209 242 ASAHQRSGRAGRT-Q-PGKCFRLYT 264 (574)
Q Consensus 242 ~~~~QR~GRaGR~-~-~G~~~rl~t 264 (574)
++|.||+|||||. + +|.||.++.
T Consensus 507 ~~y~Qr~GRaGR~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 507 ASAAQRRGRVGRNPSQIGDEYHYGG 531 (673)
T ss_dssp HHHHHHHTTSSCCSSCCCEEEEECS
T ss_pred HHHHHHhhccCCCCCCCCEEEEEEe
Confidence 9999999999998 3 799999975
No 33
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.93 E-value=1e-25 Score=249.73 Aligned_cols=230 Identities=15% Similarity=0.191 Sum_probs=165.1
Q ss_pred CCCeEEEchHHHHHHHhcC--CCCCCccEEEEecCCC---CCc--chHHHHHHHHHHHh-hCCCccEEEEccCCCH--HH
Q 008209 8 LLGGRYLTDGMLLREAMTD--PLLERYKVIVLDEAHE---RTL--ATDVLFGLLKEVLK-NRPDLKLVVMSATLEA--EK 77 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~--~~L~~~~~vIiDE~He---R~~--~~d~ll~~lk~~~~-~~~~~klvlmSATl~~--~~ 77 (574)
..+|+|+|||+|++.+... ..+..+++|||||+|. .+. ....++..+..... ..++.++++||||++. ..
T Consensus 150 ~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~ 229 (579)
T 3sqw_A 150 RPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQK 229 (579)
T ss_dssp CCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHH
T ss_pred CCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHH
Confidence 4789999999999988753 3688999999999993 221 12223333332211 2247899999999963 44
Q ss_pred HHhh-hCCCCeEEeCC--e-----eeceeEEeecCC-chhHHHHHHHHHHHHHh-cCCCCCEEEEcCCHHHHHHHHHHHH
Q 008209 78 FQGY-FYGAPLMKVPG--R-----LHPVEIFYTQEP-ERDYLEAAIRTVVQIHM-CEPSGDILVFLTGEEEIEDACRKIT 147 (574)
Q Consensus 78 ~~~~-f~~~~~i~~~g--r-----~~~v~~~y~~~~-~~~~~~~~~~~~~~i~~-~~~~g~iLVFl~~~~ei~~~~~~L~ 147 (574)
+... +.....+.+.. . ...+...+.... ........+..+..... ..+++++|||++++.+++.+++.|.
T Consensus 230 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~ 309 (579)
T 3sqw_A 230 LANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILK 309 (579)
T ss_dssp HTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHH
Confidence 4443 33322222211 1 111222222211 12233333444443332 2567899999999999999999998
Q ss_pred HHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecC
Q 008209 148 KEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNP 227 (574)
Q Consensus 148 ~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~ 227 (574)
+... .++.+..+||++++.+|..+++.|..|. .+|+|||+++++|||+|+|++||+++.
T Consensus 310 ~~~~------~~~~v~~~hg~~~~~~R~~~~~~F~~g~-------~~vLVaT~~~~~GiDip~v~~VI~~~~-------- 368 (579)
T 3sqw_A 310 NEFK------KDLPILEFHGKITQNKRTSLVKRFKKDE-------SGILVCTDVGARGMDFPNVHEVLQIGV-------- 368 (579)
T ss_dssp HHHT------TTSCEEEESTTSCHHHHHHHHHHHHHCS-------SEEEEECGGGTSSCCCTTCCEEEEESC--------
T ss_pred Hhhc------CCCcEEEecCCCCHHHHHHHHHHhhcCC-------CeEEEEcchhhcCCCcccCCEEEEcCC--------
Confidence 7542 3577999999999999999999999888 999999999999999999999998886
Q ss_pred CCCcceeeeeeccHhhHHHhcccCCCCC-CCeEEeecccccc
Q 008209 228 RVRVESLLVSPISKASAHQRSGRAGRTQ-PGKCFRLYTEKSF 268 (574)
Q Consensus 228 ~~~~~~l~~~~is~~~~~QR~GRaGR~~-~G~~~rl~t~~~~ 268 (574)
|.|..+|.||+|||||.| +|.|+.++++.+.
T Consensus 369 ----------p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~ 400 (579)
T 3sqw_A 369 ----------PSELANYIHRIGRTARSGKEGSSVLFICKDEL 400 (579)
T ss_dssp ----------CSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGH
T ss_pred ----------CCCHHHhhhhccccccCCCCceEEEEEcccHH
Confidence 789999999999999998 6999999987654
No 34
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.93 E-value=3.1e-26 Score=259.33 Aligned_cols=114 Identities=19% Similarity=0.267 Sum_probs=67.3
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEc--------CCCCCHHHHhhhcCCCCC-CCCCCCCCCcE
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPL--------YSTLPPAMQQKIFEPAPP-PSKEGGPPGRK 194 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~l--------hs~l~~~~q~~v~~~~~~-g~~~~~~~~~k 194 (574)
.+++++|||++++.+++.+++.|.+. .....+.+..+ ||++++++|.++++.|+. |. .+
T Consensus 396 ~~~~~~IIF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~-------~~ 463 (696)
T 2ykg_A 396 NPETITILFVKTRALVDALKNWIEGN-----PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGD-------HN 463 (696)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHC-----TTCCSCCEEC-----------------------------C-------CS
T ss_pred CCCCcEEEEeCcHHHHHHHHHHHHhC-----CCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCC-------cc
Confidence 35789999999999999999999862 00122556666 669999999999999998 88 89
Q ss_pred EEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEEeecccccc
Q 008209 195 IVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSF 268 (574)
Q Consensus 195 vivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl~t~~~~ 268 (574)
|||||+++|+|||+|++++||+++. |.|..+|.||+|| ||.++|.||.++++.+.
T Consensus 464 vLVaT~v~~~GiDip~v~~VI~~d~------------------p~s~~~~~Qr~GR-GR~~~g~~~~l~~~~~~ 518 (696)
T 2ykg_A 464 ILIATSVADEGIDIAQCNLVILYEY------------------VGNVIKMIQTRGR-GRARGSKCFLLTSNAGV 518 (696)
T ss_dssp CSEEEESSCCC---CCCSEEEEESC------------------C--CCCC----------CCCEEEEEESCHHH
T ss_pred EEEEechhhcCCcCccCCEEEEeCC------------------CCCHHHHHHhhcc-CcCCCceEEEEecCCCH
Confidence 9999999999999999999998776 7788899999999 99999999999998765
No 35
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.93 E-value=9.3e-27 Score=244.81 Aligned_cols=222 Identities=20% Similarity=0.308 Sum_probs=54.6
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHH-hhCCCccEEEEccCCCH---HHHHhhh
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVL-KNRPDLKLVVMSATLEA---EKFQGYF 82 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~-~~~~~~klvlmSATl~~---~~~~~~f 82 (574)
..+|+|+|+|.|++.+..+. .+.++++||+||+|. ....++. ..+..+. ...++.++++||||+.. +.+..++
T Consensus 138 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~-~~~~~~~-~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 215 (394)
T 1fuu_A 138 DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE-MLSSGFK-EQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFM 215 (394)
T ss_dssp HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH-HHHTTCH-HHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHC
T ss_pred CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHH-hhCCCcH-HHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhc
Confidence 36899999999999987765 478999999999994 1111111 1122222 24568899999999964 3444566
Q ss_pred CCCCeEEeCCeeec---eeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCC
Q 008209 83 YGAPLMKVPGRLHP---VEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGP 159 (574)
Q Consensus 83 ~~~~~i~~~gr~~~---v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~ 159 (574)
.+...+.+...... +..+|......++.. ..+..+....+.+++|||++++++++.+++.|.+ .+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~---------~~ 283 (394)
T 1fuu_A 216 RNPVRILVKKDELTLEGIKQFYVNVEEEEYKY---ECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRN---------DK 283 (394)
T ss_dssp CSCEEEEECC----------------------------------------------------------------------
T ss_pred CCCeEEEecCccccCCCceEEEEEcCchhhHH---HHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHH---------cC
Confidence 54433443332221 223333222222211 2233333334578999999999999999999976 45
Q ss_pred eEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeec
Q 008209 160 VKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPI 239 (574)
Q Consensus 160 ~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~i 239 (574)
+.+..+||+++..+|..+++.|.+|. .+|+|||+++++|+|+|++++||+++. |.
T Consensus 284 ~~~~~~~~~~~~~~r~~~~~~f~~~~-------~~vlv~T~~~~~Gldi~~~~~Vi~~~~------------------p~ 338 (394)
T 1fuu_A 284 FTVSAIYSDLPQQERDTIMKEFRSGS-------SRILISTDLLARGIDVQQVSLVINYDL------------------PA 338 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CeEEEeeCCCCHHHHHHHHHHHHCCC-------CcEEEECChhhcCCCcccCCEEEEeCC------------------CC
Confidence 77899999999999999999999888 899999999999999999999998876 78
Q ss_pred cHhhHHHhcccCCCCC-CCeEEeecccccc
Q 008209 240 SKASAHQRSGRAGRTQ-PGKCFRLYTEKSF 268 (574)
Q Consensus 240 s~~~~~QR~GRaGR~~-~G~~~rl~t~~~~ 268 (574)
|..+|.||+|||||.| +|.|+.++++.+.
T Consensus 339 s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 368 (394)
T 1fuu_A 339 NKENYIHRIGRGGRFGRKGVAINFVTNEDV 368 (394)
T ss_dssp ------------------------------
T ss_pred CHHHHHHHcCcccCCCCCceEEEEEchhHH
Confidence 8999999999999996 6999999998765
No 36
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.92 E-value=4e-26 Score=230.86 Aligned_cols=191 Identities=19% Similarity=0.281 Sum_probs=157.9
Q ss_pred eeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhh
Q 008209 97 VEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQK 176 (574)
Q Consensus 97 v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~ 176 (574)
++.+|...+..+.++. +..++...+++++|||++|+++++.+++.|.+ .++.+.++||++++.+|..
T Consensus 3 v~~~~i~~~~~~K~~~----L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~---------~g~~~~~lhg~l~~~~r~~ 69 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEV----LSDLLYVASPDRAMVFTRTKAETEEIAQGLLR---------LGHPAQALHGDMSQGERER 69 (300)
T ss_dssp SEEEEEECCSSSHHHH----HHHHHHHHCCSSEEEECSSHHHHHHHHHHHHT---------TTCCEEEECSCCCTHHHHH
T ss_pred eEEEEEECCHHHHHHH----HHHHHHhcCCCCEEEEECCHHHHHHHHHHHHh---------CCCCEEEEeCCCCHHHHHH
Confidence 4455655555555443 33333334589999999999999999999975 4678999999999999999
Q ss_pred hcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC-
Q 008209 177 IFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ- 255 (574)
Q Consensus 177 v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~- 255 (574)
+++.|+.|. .+|+||||++++|+|||++++|||+|+ |.|.++|.||+|||||.|
T Consensus 70 ~~~~f~~g~-------~~vLVaT~va~~Gidi~~v~~VI~~d~------------------p~s~~~y~Qr~GRagR~g~ 124 (300)
T 3i32_A 70 VMGAFRQGE-------VRVLVATDVAARGLDIPQVDLVVHYRM------------------PDRAEAYQHRSGRTGRAGR 124 (300)
T ss_dssp HHHHHHHTS-------CCEEEECSTTTCSTTCCCCSEEEESSC------------------CSSTTHHHHHHTCCC----
T ss_pred HHHHhhcCC-------ceEEEEechhhcCccccceeEEEEcCC------------------CCCHHHHHHHccCcCcCCC
Confidence 999999988 999999999999999999999999987 788999999999999997
Q ss_pred CCeEEeeccccc--------------cccccCCCCcchhccCCchhhHHHHhhcCCCCcccc-----CCCCCCcHHHHHH
Q 008209 256 PGKCFRLYTEKS--------------FNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHF-----DFMDPPAPETLMR 316 (574)
Q Consensus 256 ~G~~~rl~t~~~--------------~~~~l~~~~~pei~~~~l~~~~L~l~~~~~~~~~~~-----~~l~~P~~~~l~~ 316 (574)
+|.||.+|+..+ + ..+.....|||.+.++..+++.++.++..++..| .++++|+++.+.+
T Consensus 125 ~G~~i~l~~~~e~~~~~~ie~~~~~~~-~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laa 203 (300)
T 3i32_A 125 GGRVVLLYGPRERRDVEALERAVGRRF-KRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAA 203 (300)
T ss_dssp -CEEEEEECSSTHHHHHHHHHHHTCCC-EECCCCCHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHH
T ss_pred CceEEEEeChHHHHHHHHHHHHhCCcc-eEeCCCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHH
Confidence 799999999876 4 4577778899999999999999998876666555 5678899999999
Q ss_pred HHHHHHHcCC
Q 008209 317 ALEVLNYLGA 326 (574)
Q Consensus 317 al~~L~~lga 326 (574)
|+..|.....
T Consensus 204 al~~l~~~~~ 213 (300)
T 3i32_A 204 LLALLLGGAP 213 (300)
T ss_dssp HHHHHHTCCC
T ss_pred HHHHHhcCCc
Confidence 9999966554
No 37
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.92 E-value=5.2e-26 Score=248.04 Aligned_cols=227 Identities=18% Similarity=0.217 Sum_probs=145.5
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCC--HHHHHhhhC
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLE--AEKFQGYFY 83 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~--~~~~~~~f~ 83 (574)
..+|+|+|++.|++.+.... .+.++++|||||+|...-...+. ..+..+.. .+++.++|+||||+. .+.+...+.
T Consensus 235 ~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~-~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~ 313 (508)
T 3fho_A 235 DAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLG-DQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFA 313 (508)
T ss_dssp CCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CH-HHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHS
T ss_pred CCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcH-HHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhc
Confidence 46899999999999988765 48999999999999533222222 22222222 456899999999996 555555443
Q ss_pred -CCCeEEeCCeeec---eeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCC
Q 008209 84 -GAPLMKVPGRLHP---VEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGP 159 (574)
Q Consensus 84 -~~~~i~~~gr~~~---v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~ 159 (574)
+...+.+.....+ +...+......+. ....+..+.....++++|||++++++++.+++.|.+ .+
T Consensus 314 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~---------~~ 381 (508)
T 3fho_A 314 PNANEIRLKTEELSVEGIKQLYMDCQSEEH---KYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTA---------DG 381 (508)
T ss_dssp TTCEEECCCCCC----CCCCEEEEC--CHH---HHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTT---------TT
T ss_pred CCCeEEEeccccCCcccceEEEEECCchHH---HHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHh---------CC
Confidence 3334444443332 2233333222222 223344444445678999999999999999999865 45
Q ss_pred eEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeec
Q 008209 160 VKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPI 239 (574)
Q Consensus 160 ~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~i 239 (574)
..+..+||+++..+|..+++.|.+|. .+|+|||+++++|+|+|++++||+++..... ....
T Consensus 382 ~~v~~~hg~~~~~~R~~il~~f~~g~-------~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~------------~~~~ 442 (508)
T 3fho_A 382 HTVACLTGNLEGAQRDAIMDSFRVGT-------SKVLVTTNVIARGIDVSQVNLVVNYDMPLDQ------------AGRP 442 (508)
T ss_dssp CCCCEEC-----CTTGGGTHHHHSSS-------CCCCEECC-----CCCTTCCEEEC----CC-----------------
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCC-------CeEEEeCChhhcCCCccCCCEEEEECCCCcc------------cCCC
Confidence 67899999999999999999999988 8999999999999999999999987752111 0126
Q ss_pred cHhhHHHhcccCCCCC-CCeEEeecccc
Q 008209 240 SKASAHQRSGRAGRTQ-PGKCFRLYTEK 266 (574)
Q Consensus 240 s~~~~~QR~GRaGR~~-~G~~~rl~t~~ 266 (574)
|..+|.||+|||||.+ +|.|+.+++..
T Consensus 443 s~~~~~Qr~GRagR~g~~g~~i~l~~~~ 470 (508)
T 3fho_A 443 DPQTYLHRIGRTGRFGRVGVSINFVHDK 470 (508)
T ss_dssp CTHHHHHTTSCCC-----CEEEEEECTT
T ss_pred CHHHHHHHhhhcCCCCCCcEEEEEEeCh
Confidence 7889999999999998 69999999854
No 38
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.92 E-value=2.8e-25 Score=228.33 Aligned_cols=211 Identities=18% Similarity=0.199 Sum_probs=158.4
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCCH---HHHHhhh
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLEA---EKFQGYF 82 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~~---~~~~~~f 82 (574)
..+|+|+|++.|++.+.... .+.++++||+||+|. +..+-....++.++. .....++++||||+.. +.+..|+
T Consensus 105 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~--~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~ 182 (337)
T 2z0m_A 105 NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADL--MFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFI 182 (337)
T ss_dssp TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHH--HHHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHS
T ss_pred CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHH--hhccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhc
Confidence 46899999999999887655 478999999999993 111111222333333 3456788999999964 3566777
Q ss_pred CCCCeEEeCCeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEE
Q 008209 83 YGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKV 162 (574)
Q Consensus 83 ~~~~~i~~~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v 162 (574)
.+...+........+...+........ . .........++++|||++++++++.+++.|. .+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~-------------~~ 243 (337)
T 2z0m_A 183 TNYEEIEACIGLANVEHKFVHVKDDWR-S-----KVQALRENKDKGVIVFVRTRNRVAKLVRLFD-------------NA 243 (337)
T ss_dssp CSCEEEECSGGGGGEEEEEEECSSSSH-H-----HHHHHHTCCCSSEEEECSCHHHHHHHHTTCT-------------TE
T ss_pred CCceeeecccccCCceEEEEEeChHHH-H-----HHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh-------------hh
Confidence 655555443333345544444332211 1 1133334678899999999999998877764 36
Q ss_pred EEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHh
Q 008209 163 VPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKA 242 (574)
Q Consensus 163 ~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~ 242 (574)
..+||+++..+|.++++.|.+|. .+|+|||+++++|+|+|++++||+++. |.|..
T Consensus 244 ~~~~~~~~~~~r~~~~~~f~~~~-------~~vlv~T~~~~~Gid~~~~~~Vi~~~~------------------~~s~~ 298 (337)
T 2z0m_A 244 IELRGDLPQSVRNRNIDAFREGE-------YDMLITTDVASRGLDIPLVEKVINFDA------------------PQDLR 298 (337)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTS-------CSEEEECHHHHTTCCCCCBSEEEESSC------------------CSSHH
T ss_pred hhhcCCCCHHHHHHHHHHHHcCC-------CcEEEEcCccccCCCccCCCEEEEecC------------------CCCHH
Confidence 78999999999999999999888 899999999999999999999998876 78899
Q ss_pred hHHHhcccCCCCC-CCeEEeecc
Q 008209 243 SAHQRSGRAGRTQ-PGKCFRLYT 264 (574)
Q Consensus 243 ~~~QR~GRaGR~~-~G~~~rl~t 264 (574)
+|.||+|||||.| +|.|+.+++
T Consensus 299 ~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 299 TYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp HHHHHHTTBCGGGCCEEEEEEES
T ss_pred HhhHhcCccccCCCCceEEEEEe
Confidence 9999999999997 699999888
No 39
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.91 E-value=5.7e-24 Score=228.64 Aligned_cols=112 Identities=21% Similarity=0.298 Sum_probs=100.1
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCC--------CCCHHHHhhhcCCCCCCCCCCCCCCcEE
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYS--------TLPPAMQQKIFEPAPPPSKEGGPPGRKI 195 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs--------~l~~~~q~~v~~~~~~g~~~~~~~~~kv 195 (574)
.+++++|||++++..++.+++.|.+ .++.+..+|| +++..+|..+++.|.+|. .+|
T Consensus 359 ~~~~k~lVF~~~~~~~~~l~~~L~~---------~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~-------~~v 422 (494)
T 1wp9_A 359 KQNSKIIVFTNYRETAKKIVNELVK---------DGIKAKRFVGQASKENDRGLSQREQKLILDEFARGE-------FNV 422 (494)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHH---------TTCCEEEECCSSCC-------CCHHHHHHHHHHHTS-------CSE
T ss_pred CCCCeEEEEEccHHHHHHHHHHHHH---------cCCCcEEEeccccccccccCCHHHHHHHHHHHhcCC-------ceE
Confidence 4688999999999999999999987 3577899999 999999999999999887 899
Q ss_pred EEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEEeeccccccc
Q 008209 196 VVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFN 269 (574)
Q Consensus 196 ivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl~t~~~~~ 269 (574)
+|||++++.|||+|++++||.++. |-+.+++.||+|||||.++|.+|+|+++...+
T Consensus 423 Lv~T~~~~~Gldl~~~~~Vi~~d~------------------~~~~~~~~Qr~GR~~R~g~g~~~~l~~~~t~e 478 (494)
T 1wp9_A 423 LVATSVGEEGLDVPEVDLVVFYEP------------------VPSAIRSIQRRGRTGRHMPGRVIILMAKGTRD 478 (494)
T ss_dssp EEECGGGGGGGGSTTCCEEEESSC------------------CHHHHHHHHHHTTSCSCCCSEEEEEEETTSHH
T ss_pred EEECCccccCCCchhCCEEEEeCC------------------CCCHHHHHHHHhhccCCCCceEEEEEecCCHH
Confidence 999999999999999999997776 77889999999999999999999999987664
No 40
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.90 E-value=5.8e-24 Score=233.85 Aligned_cols=120 Identities=13% Similarity=0.179 Sum_probs=58.5
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHh--hcC-CCCCCeEEEEcCCCCCHHHHhhhcCCCCC-CCCCCCCCCcEEEEec
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEIT--NMG-DQVGPVKVVPLYSTLPPAMQQKIFEPAPP-PSKEGGPPGRKIVVST 199 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~--~~~-~~~~~~~v~~lhs~l~~~~q~~v~~~~~~-g~~~~~~~~~kvivaT 199 (574)
.+++++|||++++..++.+++.|.+... ... ....+.....+||++++.+|..+++.|.. |. .+|+|||
T Consensus 388 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~-------~~vLvaT 460 (556)
T 4a2p_A 388 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKD-------NRLLIAT 460 (556)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC-------------------------------------CCEEEEE
T ss_pred CCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCc-------eEEEEEc
Confidence 5678999999999999999999975210 000 00113445667899999999999999998 87 8999999
Q ss_pred ccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEEeeccccccc
Q 008209 200 NIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFN 269 (574)
Q Consensus 200 ~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl~t~~~~~ 269 (574)
+++++|||+|++++||+++. |-|..+|.||+|| ||.++|.||.|+++...+
T Consensus 461 ~~~~~GiDip~v~~VI~~d~------------------p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 461 SVADEGIDIVQCNLVVLYEY------------------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEVV 511 (556)
T ss_dssp C-----------CEEEEETC------------------CSCHHHHHHC---------CCEEEEESCHHHH
T ss_pred CchhcCCCchhCCEEEEeCC------------------CCCHHHHHHhcCC-CCCCCceEEEEEeCcchH
Confidence 99999999999999997766 7899999999999 999999999999987763
No 41
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.90 E-value=5.1e-24 Score=234.01 Aligned_cols=119 Identities=17% Similarity=0.216 Sum_probs=77.8
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcC---CCCCCeEEEEcCCCCCHHHHhhhcCCCCC-CCCCCCCCCcEEEEec
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMG---DQVGPVKVVPLYSTLPPAMQQKIFEPAPP-PSKEGGPPGRKIVVST 199 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~---~~~~~~~v~~lhs~l~~~~q~~v~~~~~~-g~~~~~~~~~kvivaT 199 (574)
.+++++|||++++..++.+++.|.+.-.... ....+.....+||++++.+|.++++.|.+ |. .+|+|||
T Consensus 387 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~-------~~vLvaT 459 (555)
T 3tbk_A 387 KPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGD-------NNILIAT 459 (555)
T ss_dssp CTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------C-------CSEEEEC
T ss_pred CCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCC-------eeEEEEc
Confidence 4578999999999999999999986311000 00113345567789999999999999998 77 8999999
Q ss_pred ccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEEeecccccc
Q 008209 200 NIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSF 268 (574)
Q Consensus 200 ~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl~t~~~~ 268 (574)
+++++|||+|++++||+++. |-|..+|.||+|| ||..+|.||.|+++.+.
T Consensus 460 ~~~~~GlDlp~v~~VI~~d~------------------p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~ 509 (555)
T 3tbk_A 460 SVADEGIDIAECNLVILYEY------------------VGNVIKMIQTRGR-GRARDSKCFLLTSSADV 509 (555)
T ss_dssp CCTTCCEETTSCSEEEEESC------------------CSSCCCEECSSCC-CTTTSCEEEEEESCHHH
T ss_pred chhhcCCccccCCEEEEeCC------------------CCCHHHHHHhcCc-CcCCCceEEEEEcCCCH
Confidence 99999999999999998765 7788899999999 99999999999998765
No 42
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.90 E-value=2.9e-24 Score=228.13 Aligned_cols=207 Identities=16% Similarity=0.158 Sum_probs=144.3
Q ss_pred CCeEEEchHHHHHHHhcCCCCCCccEEEEecCCC--------------CCcchHHHHHHHHHHH--------hhCCCccE
Q 008209 9 LGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHE--------------RTLATDVLFGLLKEVL--------KNRPDLKL 66 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~He--------------R~~~~d~ll~~lk~~~--------~~~~~~kl 66 (574)
.+|+|+|||.|++.+.. ..+.++++|||||+|. .+...+.+-.+++.+- ...++.++
T Consensus 118 ~~Iiv~Tp~~l~~~l~~-~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 196 (414)
T 3oiy_A 118 YHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGIL 196 (414)
T ss_dssp CSEEEEEHHHHHHCHHH-HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEE
T ss_pred CCEEEECHHHHHHHHHH-hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceE
Confidence 79999999999887764 4567999999999993 2222221111222111 01268899
Q ss_pred EEEccCCCH-----HHHHhhhCCCCeEEeCCeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHH
Q 008209 67 VVMSATLEA-----EKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIED 141 (574)
Q Consensus 67 vlmSATl~~-----~~~~~~f~~~~~i~~~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~ 141 (574)
++||||+.. ..+..++. ..+.........+...|......+.+. .+... .++++|||++++++++.
T Consensus 197 i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~-------~~l~~-~~~~~lVF~~~~~~~~~ 267 (414)
T 3oiy_A 197 VVSSATAKPRGIRPLLFRDLLN-FTVGRLVSVARNITHVRISSRSKEKLV-------ELLEI-FRDGILIFAQTEEEGKE 267 (414)
T ss_dssp EESSCCSSCCSSTTHHHHHHHS-CCSSCCCCCCCSEEEEEESSCCHHHHH-------HHHHH-HCSSEEEEESSHHHHHH
T ss_pred EEEecCCCcchhHHHHHHHhhc-cCcCccccccccchheeeccCHHHHHH-------HHHHH-cCCCEEEEECCHHHHHH
Confidence 999999522 22333332 111111122223555555443333322 22221 24899999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCeEEE-EcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEe----cccccccccCCC-eEEEE
Q 008209 142 ACRKITKEITNMGDQVGPVKVV-PLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVS----TNIAETSLTIDG-IVYVI 215 (574)
Q Consensus 142 ~~~~L~~~~~~~~~~~~~~~v~-~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kviva----T~iae~gitip~-v~~VI 215 (574)
+++.|.+ .++.+. .+||. +| + ++.|.+|. .+|+|| |+++++|+|+|+ |++||
T Consensus 268 l~~~L~~---------~~~~~~~~~h~~----~r-~-~~~f~~g~-------~~vLvat~s~T~~~~~GiDip~~v~~VI 325 (414)
T 3oiy_A 268 LYEYLKR---------FKFNVGETWSEF----EK-N-FEDFKVGK-------INILIGVQAYYGKLTRGVDLPERIKYVI 325 (414)
T ss_dssp HHHHHHH---------TTCCEEESSSCH----HH-H-HHHHHTTS-------CSEEEEECCTTCCCCCCCCCTTTCCEEE
T ss_pred HHHHHHH---------cCCceehhhcCc----ch-H-HHHHhCCC-------CeEEEEecCcCchhhccCccccccCEEE
Confidence 9999986 356777 88985 33 3 88888888 999999 999999999999 99999
Q ss_pred cCCcccceeecCCCCcceeeeee--ccHhhHHHhcccCCCCC-----CCeEEeeccc
Q 008209 216 DPGFAKQKVYNPRVRVESLLVSP--ISKASAHQRSGRAGRTQ-----PGKCFRLYTE 265 (574)
Q Consensus 216 D~g~~k~~~y~~~~~~~~l~~~~--is~~~~~QR~GRaGR~~-----~G~~~rl~t~ 265 (574)
++|. | .|..+|.||+|||||.| +|.|+.++.+
T Consensus 326 ~~~~------------------p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~~ 364 (414)
T 3oiy_A 326 FWGT------------------PSGPDVYTYIQASGRSSRILNGVLVKGVSVIFEED 364 (414)
T ss_dssp EESC------------------CTTTCHHHHHHHHGGGCCEETTEECCEEEEEECCC
T ss_pred EECC------------------CCCCCHHHHHHHhCccccCCCCCCcceEEEEEEcc
Confidence 8887 7 79999999999999986 6999999844
No 43
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.88 E-value=1.7e-23 Score=237.03 Aligned_cols=110 Identities=19% Similarity=0.225 Sum_probs=88.0
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCC--------CCHHHHhhhcCCCCCCCCCCCCCCcEEEE
Q 008209 126 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYST--------LPPAMQQKIFEPAPPPSKEGGPPGRKIVV 197 (574)
Q Consensus 126 ~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~--------l~~~~q~~v~~~~~~g~~~~~~~~~kviv 197 (574)
++++|||+++++.++.+++.|.+.. .+ ...++.+..+||+ |++.+|.++++.|..|. .+|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~-~l--~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~-------~~VLV 469 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENE-KF--AEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGK-------INLLI 469 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSC-SC--C-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC----------CCSE
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCc-cc--cccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCC-------CcEEE
Confidence 7899999999999999999997620 00 0125788999999 99999999999999988 99999
Q ss_pred ecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEEeeccc
Q 008209 198 STNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTE 265 (574)
Q Consensus 198 aT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl~t~ 265 (574)
||+++++|||+|++++||++++ |-|..+|.||+|||||.| .++.++..
T Consensus 470 aT~~~~~GIDip~v~~VI~~d~------------------p~s~~~~~Qr~GRArr~g--~~~~l~~~ 517 (699)
T 4gl2_A 470 ATTVAEEGLDIKECNIVIRYGL------------------VTNEIAMVQARGRARADE--STYVLVAH 517 (699)
T ss_dssp EECSCCTTSCCCSCCCCEEESC------------------CCCHHHHHHHHTTSCSSS--CEEEEEEE
T ss_pred EccccccCCccccCCEEEEeCC------------------CCCHHHHHHHcCCCCCCC--ceEEEEEe
Confidence 9999999999999999997776 788999999999988765 44444443
No 44
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.88 E-value=3.3e-22 Score=229.47 Aligned_cols=119 Identities=13% Similarity=0.150 Sum_probs=63.6
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCC---CCCCeEEEEcCCCCCHHHHhhhcCCCCC-CCCCCCCCCcEEEEec
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGD---QVGPVKVVPLYSTLPPAMQQKIFEPAPP-PSKEGGPPGRKIVVST 199 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~---~~~~~~v~~lhs~l~~~~q~~v~~~~~~-g~~~~~~~~~kvivaT 199 (574)
.+++++|||++++..++.+++.|.+...-... ...+.....+||++++.+|..+++.|+. |. .+|+|||
T Consensus 629 ~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~-------~~vLVaT 701 (797)
T 4a2q_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKD-------NRLLIAT 701 (797)
T ss_dssp CSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------C-------CSEEEEE
T ss_pred CCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCC-------ceEEEEc
Confidence 56789999999999999999999762100000 0123345677999999999999999998 77 8999999
Q ss_pred ccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEEeecccccc
Q 008209 200 NIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSF 268 (574)
Q Consensus 200 ~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl~t~~~~ 268 (574)
+++++|||+|++++||+++. |-|..+|.||+|| ||..+|.||+|+++...
T Consensus 702 ~~~~~GIDlp~v~~VI~yd~------------------p~s~~~~iQr~GR-GR~~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 702 SVADEGIDIVQCNLVVLYEY------------------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEV 751 (797)
T ss_dssp CC-------CCCSEEEEESC------------------CSCHHHHHTC--------CCCEEEEECCHHH
T ss_pred CchhcCCCchhCCEEEEeCC------------------CCCHHHHHHhcCC-CCCCCceEEEEEeCCcH
Confidence 99999999999999997665 7899999999999 99999999999998765
No 45
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.87 E-value=4.1e-23 Score=233.32 Aligned_cols=212 Identities=17% Similarity=0.204 Sum_probs=144.8
Q ss_pred CCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHH-hhhCCCC
Q 008209 8 LLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQ-GYFYGAP 86 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~-~~f~~~~ 86 (574)
..+|+|+|++.+.+ +..+.++++|||||+|..+.... ..+.....+.++++||||+....+. .++++..
T Consensus 471 ~~~IvVgT~~ll~~----~~~~~~l~lVVIDEaHr~g~~qr------~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~ 540 (780)
T 1gm5_A 471 QIDVVIGTHALIQE----DVHFKNLGLVIIDEQHRFGVKQR------EALMNKGKMVDTLVMSATPIPRSMALAFYGDLD 540 (780)
T ss_dssp CCCEEEECTTHHHH----CCCCSCCCEEEEESCCCC-----------CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSS
T ss_pred CCCEEEECHHHHhh----hhhccCCceEEecccchhhHHHH------HHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcc
Confidence 37999999997743 45689999999999997433321 1112233578999999999776665 3444433
Q ss_pred eEEe---CCeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHH--------HHHHHHHHHHHhhcCC
Q 008209 87 LMKV---PGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEI--------EDACRKITKEITNMGD 155 (574)
Q Consensus 87 ~i~~---~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei--------~~~~~~L~~~~~~~~~ 155 (574)
+..+ +....|+...+.+....+ ..+..+.... ..+++++||||+.++. +.+++.|.+.
T Consensus 541 ~s~i~~~p~~r~~i~~~~~~~~~~~---~l~~~i~~~l--~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~------ 609 (780)
T 1gm5_A 541 VTVIDEMPPGRKEVQTMLVPMDRVN---EVYEFVRQEV--MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKE------ 609 (780)
T ss_dssp CEEECCCCSSCCCCEECCCCSSTHH---HHHHHHHHHT--TTSCCBCCBCCCC--------CHHHHHHHSGGGS------
T ss_pred eeeeeccCCCCcceEEEEeccchHH---HHHHHHHHHH--hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhh------
Confidence 3333 222346666555433222 2223333222 4578999999987654 3333333220
Q ss_pred CCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceee
Q 008209 156 QVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLL 235 (574)
Q Consensus 156 ~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~ 235 (574)
..++..+..+||+|++++|..+++.|.+|. .+|+|||+++|+|||+|++++||..+. .
T Consensus 610 ~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~-------~~ILVaT~vie~GIDiP~v~~VIi~d~--------~------- 667 (780)
T 1gm5_A 610 VFPEFKLGLMHGRLSQEEKDRVMLEFAEGR-------YDILVSTTVIEVGIDVPRANVMVIENP--------E------- 667 (780)
T ss_dssp CC---CBCCCCSSSCCSCSHHHHHHHTTTS-------SSBCCCSSCCCSCSCCTTCCEEEBCSC--------S-------
T ss_pred hcCCCcEEEEeCCCCHHHHHHHHHHHHCCC-------CeEEEECCCCCccccCCCCCEEEEeCC--------C-------
Confidence 123567899999999999999999999988 999999999999999999999996553 1
Q ss_pred eeeccHhhHHHhcccCCCCC-CCeEEeecc
Q 008209 236 VSPISKASAHQRSGRAGRTQ-PGKCFRLYT 264 (574)
Q Consensus 236 ~~~is~~~~~QR~GRaGR~~-~G~~~rl~t 264 (574)
..+.+++.||+||+||.+ +|.||.+++
T Consensus 668 --r~~l~~l~Qr~GRaGR~g~~g~~ill~~ 695 (780)
T 1gm5_A 668 --RFGLAQLHQLRGRVGRGGQEAYCFLVVG 695 (780)
T ss_dssp --SSCTTHHHHHHHTSCCSSTTCEEECCCC
T ss_pred --CCCHHHHHHHhcccCcCCCCCEEEEEEC
Confidence 135678999999999987 699999987
No 46
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.87 E-value=1.6e-21 Score=226.54 Aligned_cols=119 Identities=13% Similarity=0.185 Sum_probs=64.5
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHh--hcCC-CCCCeEEEEcCCCCCHHHHhhhcCCCCC-CCCCCCCCCcEEEEec
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEIT--NMGD-QVGPVKVVPLYSTLPPAMQQKIFEPAPP-PSKEGGPPGRKIVVST 199 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~--~~~~-~~~~~~v~~lhs~l~~~~q~~v~~~~~~-g~~~~~~~~~kvivaT 199 (574)
.+++++|||+++++.++.+++.|.+... .+.. ...+.....+||+++..+|..+++.|+. |. .+|+|||
T Consensus 629 ~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~-------~~VLVaT 701 (936)
T 4a2w_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKD-------NRLLIAT 701 (936)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------C-------CSEEEEE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCC-------eeEEEEe
Confidence 4578999999999999999999986210 0000 0113345667999999999999999998 87 8999999
Q ss_pred ccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEEeecccccc
Q 008209 200 NIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSF 268 (574)
Q Consensus 200 ~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl~t~~~~ 268 (574)
+++++|||+|++++||+++. |-|..+|.||+|| ||..+|.||.|+++...
T Consensus 702 ~~~~eGIDlp~v~~VI~yD~------------------p~s~~~~iQr~GR-GR~~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 702 SVADEGIDIVQCNLVVLYEY------------------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEV 751 (936)
T ss_dssp CC------CCCCSEEEEESC------------------CSCSHHHHCC--------CCCEEEEESCHHH
T ss_pred CchhcCCcchhCCEEEEeCC------------------CCCHHHHHHhcCC-CCCCCCEEEEEEeCCCH
Confidence 99999999999999997665 7788999999999 99999999999998766
No 47
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.86 E-value=3.2e-21 Score=227.51 Aligned_cols=212 Identities=17% Similarity=0.222 Sum_probs=156.4
Q ss_pred CCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhhCCCC-
Q 008209 8 LLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAP- 86 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f~~~~- 86 (574)
..+|+|+|++.| ..+..+.++++|||||+|..+... ...++. .+++.++++||||+....+...+.+..
T Consensus 706 ~~dIvV~T~~ll----~~~~~~~~l~lvIiDEaH~~g~~~---~~~l~~---l~~~~~vl~lSATp~p~~l~~~~~~~~~ 775 (1151)
T 2eyq_A 706 KIDILIGTHKLL----QSDVKFKDLGLLIVDEEHRFGVRH---KERIKA---MRANVDILTLTATPIPRTLNMAMSGMRD 775 (1151)
T ss_dssp CCSEEEECTHHH----HSCCCCSSEEEEEEESGGGSCHHH---HHHHHH---HHTTSEEEEEESSCCCHHHHHHHTTTSE
T ss_pred CCCEEEECHHHH----hCCccccccceEEEechHhcChHH---HHHHHH---hcCCCCEEEEcCCCChhhHHHHHhcCCC
Confidence 378999999865 345568999999999999744332 222222 345789999999997666655444322
Q ss_pred --eEEe-CCeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEE
Q 008209 87 --LMKV-PGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVV 163 (574)
Q Consensus 87 --~i~~-~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~ 163 (574)
++.. +....++..++.......... .+.... ..+++++||+|++++++.+++.|.+.. ++..+.
T Consensus 776 ~~~i~~~~~~r~~i~~~~~~~~~~~i~~----~il~~l--~~g~qvlvf~~~v~~~~~l~~~L~~~~-------p~~~v~ 842 (1151)
T 2eyq_A 776 LSIIATPPARRLAVKTFVREYDSMVVRE----AILREI--LRGGQVYYLYNDVENIQKAAERLAELV-------PEARIA 842 (1151)
T ss_dssp EEECCCCCCBCBCEEEEEEECCHHHHHH----HHHHHH--TTTCEEEEECCCSSCHHHHHHHHHHHC-------TTSCEE
T ss_pred ceEEecCCCCccccEEEEecCCHHHHHH----HHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhC-------CCCeEE
Confidence 2221 223345666655444322222 222222 357999999999999999999998742 457799
Q ss_pred EcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhh
Q 008209 164 PLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKAS 243 (574)
Q Consensus 164 ~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~ 243 (574)
.+||++++.+|.++++.|.+|. .+|+|||+++|+|||+|++++||.. ++. +.+.++
T Consensus 843 ~lhg~~~~~eR~~il~~F~~g~-------~~VLVaT~v~e~GiDip~v~~VIi~--------~~~---------~~~l~~ 898 (1151)
T 2eyq_A 843 IGHGQMRERELERVMNDFHHQR-------FNVLVCTTIIETGIDIPTANTIIIE--------RAD---------HFGLAQ 898 (1151)
T ss_dssp ECCSSCCHHHHHHHHHHHHTTS-------CCEEEESSTTGGGSCCTTEEEEEET--------TTT---------SSCHHH
T ss_pred EEeCCCCHHHHHHHHHHHHcCC-------CcEEEECCcceeeecccCCcEEEEe--------CCC---------CCCHHH
Confidence 9999999999999999999888 8999999999999999999999932 221 235678
Q ss_pred HHHhcccCCCCC-CCeEEeecccc
Q 008209 244 AHQRSGRAGRTQ-PGKCFRLYTEK 266 (574)
Q Consensus 244 ~~QR~GRaGR~~-~G~~~rl~t~~ 266 (574)
+.||+||+||.+ +|.||.+++..
T Consensus 899 l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 899 LHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp HHHHHTTCCBTTBCEEEEEEECCG
T ss_pred HHHHHhccCcCCCceEEEEEECCc
Confidence 999999999988 69999998764
No 48
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.83 E-value=3.4e-21 Score=225.94 Aligned_cols=181 Identities=15% Similarity=0.151 Sum_probs=123.6
Q ss_pred CCeEEEchHHHHHHHhcCCCCCCccEEEEecCCC---CCcchHHHHH------H-HHHHHh-hC-----------CCccE
Q 008209 9 LGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHE---RTLATDVLFG------L-LKEVLK-NR-----------PDLKL 66 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~He---R~~~~d~ll~------~-lk~~~~-~~-----------~~~kl 66 (574)
.+|+|+|||.|++.+.. ..+.++++|||||+|. .+-..|-++. . ++.++. .+ ++.|+
T Consensus 175 ~~IlV~Tp~rL~~~l~~-l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ 253 (1104)
T 4ddu_A 175 YHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGIL 253 (1104)
T ss_dssp CSEEEEEHHHHHHSHHH-HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEE
T ss_pred CCEEEECHHHHHHHHHh-hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceE
Confidence 78999999999888764 4478999999999993 1111133332 1 222222 11 67899
Q ss_pred EEEccCCCH-----HHHHhhhCCCCeEEeCCeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHH
Q 008209 67 VVMSATLEA-----EKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIED 141 (574)
Q Consensus 67 vlmSATl~~-----~~~~~~f~~~~~i~~~gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~ 141 (574)
++||||+.. ..+..++ ...+.........+...|......+.+. .+... .++++|||+++++.++.
T Consensus 254 ll~SAT~~p~~~~~~~~~~~l-~i~v~~~~~~~~~i~~~~~~~~k~~~L~-------~ll~~-~~~~~LVF~~s~~~a~~ 324 (1104)
T 4ddu_A 254 VVSSATAKPRGIRPLLFRDLL-NFTVGRLVSVARNITHVRISSRSKEKLV-------ELLEI-FRDGILIFAQTEEEGKE 324 (1104)
T ss_dssp EEECBSSCCCSSTTHHHHHHT-CCCCCBCCCCCCCEEEEEESCCCHHHHH-------HHHHH-HCSSEEEEESSSHHHHH
T ss_pred EEEcCCCCcHHHHHHHhhcce-eEEeccCCCCcCCceeEEEecCHHHHHH-------HHHHh-cCCCEEEEECcHHHHHH
Confidence 999999532 2233333 2222221222223555555543332222 22111 24899999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCeEEE-EcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEe----cccccccccCCC-eEEEE
Q 008209 142 ACRKITKEITNMGDQVGPVKVV-PLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVS----TNIAETSLTIDG-IVYVI 215 (574)
Q Consensus 142 ~~~~L~~~~~~~~~~~~~~~v~-~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kviva----T~iae~gitip~-v~~VI 215 (574)
++..|.+ .++.+. .+||. |++ ++.|.+|. .+|+|| |+++++|||+|+ |++||
T Consensus 325 l~~~L~~---------~g~~~~~~lhg~-----rr~-l~~F~~G~-------~~VLVatas~TdvlarGIDip~~V~~VI 382 (1104)
T 4ddu_A 325 LYEYLKR---------FKFNVGETWSEF-----EKN-FEDFKVGK-------INILIGVQAYYGKLTRGVDLPERIKYVI 382 (1104)
T ss_dssp HHHHHHH---------TTCCEEESSSSH-----HHH-HHHHHHTS-------CSEEEEETTTHHHHCCSCCCTTTCCEEE
T ss_pred HHHHHHh---------CCCCeeeEecCc-----HHH-HHHHHCCC-------CCEEEEecCCCCeeEecCcCCCCCCEEE
Confidence 9999986 456787 99982 455 88899888 999999 999999999999 99999
Q ss_pred cCCccc
Q 008209 216 DPGFAK 221 (574)
Q Consensus 216 D~g~~k 221 (574)
++|+.+
T Consensus 383 ~~d~P~ 388 (1104)
T 4ddu_A 383 FWGTPS 388 (1104)
T ss_dssp EESCCE
T ss_pred EECCCC
Confidence 999987
No 49
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.82 E-value=5.3e-21 Score=224.25 Aligned_cols=179 Identities=13% Similarity=0.077 Sum_probs=113.8
Q ss_pred CCeEEEchHHHHHHHhcCCCCCCccEEEEecCCC---CCcchHHHHHHHHHH-----HhhCCCccEEEEccCCCHH-HH-
Q 008209 9 LGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHE---RTLATDVLFGLLKEV-----LKNRPDLKLVVMSATLEAE-KF- 78 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~He---R~~~~d~ll~~lk~~-----~~~~~~~klvlmSATl~~~-~~- 78 (574)
.+|+|+|||+|++.+.+ |.++++|||||+|. ++.+.+.++..+.-. .....+.+++++|||+... .+
T Consensus 156 ~~IlV~TP~~L~~~l~~---L~~l~~lViDEah~~l~~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~ 232 (1054)
T 1gku_B 156 FKIVITTTQFLSKHYRE---LGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKK 232 (1054)
T ss_dssp CSEEEEEHHHHHHCSTT---SCCCSEEEESCHHHHHTSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTT
T ss_pred CCEEEEcHHHHHHHHHH---hccCCEEEEeChhhhhhccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCchhHH
Confidence 78999999999998765 88999999999994 111111221111000 0012457899999998532 11
Q ss_pred HhhhCCCCeEEeCCeee---ceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCC
Q 008209 79 QGYFYGAPLMKVPGRLH---PVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGD 155 (574)
Q Consensus 79 ~~~f~~~~~i~~~gr~~---~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~ 155 (574)
..++.+...+.+..... .+...|......+. +..+.. ..++++||||+++++++.+++.|.+
T Consensus 233 ~~~~~~~~~i~v~~~~~~~~~i~~~~~~~~k~~~-------L~~ll~-~~~~~~LVF~~t~~~a~~l~~~L~~------- 297 (1054)
T 1gku_B 233 AELFRQLLNFDIGSSRITVRNVEDVAVNDESIST-------LSSILE-KLGTGGIIYARTGEEAEEIYESLKN------- 297 (1054)
T ss_dssp HHHHHHHHCCCCSCCEECCCCEEEEEESCCCTTT-------THHHHT-TSCSCEEEEESSHHHHHHHHHTTTT-------
T ss_pred HHHhhcceEEEccCcccCcCCceEEEechhHHHH-------HHHHHh-hcCCCEEEEEcCHHHHHHHHHHHhh-------
Confidence 12222111122222222 24555554322222 222322 2368899999999999999998865
Q ss_pred CCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEe----cccccccccCCCe-EEEEcCCcc
Q 008209 156 QVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVS----TNIAETSLTIDGI-VYVIDPGFA 220 (574)
Q Consensus 156 ~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kviva----T~iae~gitip~v-~~VID~g~~ 220 (574)
. +.+..+||++. .+++.|..|. .+|+|| ||++++|||+|+| ++||++|..
T Consensus 298 --~-~~v~~lhg~~~-----~~l~~F~~G~-------~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 298 --K-FRIGIVTATKK-----GDYEKFVEGE-------IDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp --S-SCEEECTTSSS-----HHHHHHHHTS-------CSEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred --c-cCeeEEeccHH-----HHHHHHHcCC-------CcEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 2 77999999984 4566777887 899999 9999999999995 999999997
No 50
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.81 E-value=4.4e-19 Score=197.42 Aligned_cols=123 Identities=21% Similarity=0.178 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCC
Q 008209 107 RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSK 186 (574)
Q Consensus 107 ~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~ 186 (574)
.+...+.+..+...+. .+.++|||++|++.++.+++.|.+ .++.+..|||.+.+.++..+.+.+..
T Consensus 415 ~~K~~al~~~i~~~~~--~~~pvLVft~s~~~se~Ls~~L~~---------~gi~~~vLhg~~~~rEr~ii~~ag~~--- 480 (844)
T 1tf5_A 415 EGKFKAVAEDVAQRYM--TGQPVLVGTVAVETSELISKLLKN---------KGIPHQVLNAKNHEREAQIIEEAGQK--- 480 (844)
T ss_dssp HHHHHHHHHHHHHHHH--HTCCEEEEESCHHHHHHHHHHHHT---------TTCCCEEECSSCHHHHHHHHTTTTST---
T ss_pred HHHHHHHHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHH---------CCCCEEEeeCCccHHHHHHHHHcCCC---
Confidence 3444444444444432 366899999999999999999986 46778899999988887766655543
Q ss_pred CCCCCCcEEEEecccccccccCC--------CeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC-CC
Q 008209 187 EGGPPGRKIVVSTNIAETSLTID--------GIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ-PG 257 (574)
Q Consensus 187 ~~~~~~~kvivaT~iae~gitip--------~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~-~G 257 (574)
..|+||||+|++|+||+ |+.+||++.+ |-|...|.||+||+||.| ||
T Consensus 481 ------g~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~------------------p~s~r~y~hr~GRTGRqG~~G 536 (844)
T 1tf5_A 481 ------GAVTIATNMAGRGTDIKLGEGVKELGGLAVVGTER------------------HESRRIDNQLRGRSGRQGDPG 536 (844)
T ss_dssp ------TCEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSC------------------CSSHHHHHHHHTTSSGGGCCE
T ss_pred ------CeEEEeCCccccCcCccccchhhhcCCcEEEEecC------------------CCCHHHHHhhcCccccCCCCC
Confidence 36999999999999999 8999999988 899999999999999998 69
Q ss_pred eEEeeccccc
Q 008209 258 KCFRLYTEKS 267 (574)
Q Consensus 258 ~~~rl~t~~~ 267 (574)
.++.+++.++
T Consensus 537 ~s~~~vs~eD 546 (844)
T 1tf5_A 537 ITQFYLSMED 546 (844)
T ss_dssp EEEEEEETTS
T ss_pred eEEEEecHHH
Confidence 9999888655
No 51
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=3.2e-19 Score=166.40 Aligned_cols=142 Identities=14% Similarity=0.219 Sum_probs=110.7
Q ss_pred ceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHh
Q 008209 96 PVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQ 175 (574)
Q Consensus 96 ~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~ 175 (574)
.+..+|...+..+. ....+..+....+.+++|||++++..++.++..|.+ .++.+..+||++++.+|.
T Consensus 7 ~i~q~~~~~~~~~~---K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~---------~~~~~~~~~g~~~~~~R~ 74 (175)
T 2rb4_A 7 NIRQYYVLCEHRKD---KYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQ---------DGHQVSLLSGELTVEQRA 74 (175)
T ss_dssp CEEEEEEECSSHHH---HHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHT---------TTCCEEEECSSCCHHHHH
T ss_pred CceEEEEEcCChHh---HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH---------cCCcEEEEeCCCCHHHHH
Confidence 36666766554431 223445555555678999999999999999999976 457799999999999999
Q ss_pred hhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC
Q 008209 176 KIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ 255 (574)
Q Consensus 176 ~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~ 255 (574)
.+++.|..|. .+|+|||+++++|+|+|++++||+++... ++ ....+..+|.||+|||||.|
T Consensus 75 ~~~~~f~~g~-------~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~----~~--------~~~~~~~~~~qr~GR~gR~g 135 (175)
T 2rb4_A 75 SIIQRFRDGK-------EKVLITTNVCARGIDVKQVTIVVNFDLPV----KQ--------GEEPDYETYLHRIGRTGRFG 135 (175)
T ss_dssp HHHHHHHTTS-------CSEEEECCSCCTTTCCTTEEEEEESSCCC--------------CCSCCHHHHHHHHCBC----
T ss_pred HHHHHHHcCC-------CeEEEEecchhcCCCcccCCEEEEeCCCC----Cc--------cccCCHHHHHHHhcccccCC
Confidence 9999999888 89999999999999999999999887610 00 00178999999999999987
Q ss_pred -CCeEEeecccccc
Q 008209 256 -PGKCFRLYTEKSF 268 (574)
Q Consensus 256 -~G~~~rl~t~~~~ 268 (574)
+|.|+.+++..+.
T Consensus 136 ~~g~~~~~~~~~~~ 149 (175)
T 2rb4_A 136 KKGLAFNMIEVDEL 149 (175)
T ss_dssp CCEEEEEEECGGGH
T ss_pred CCceEEEEEccchH
Confidence 6999999987654
No 52
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.80 E-value=3e-19 Score=164.58 Aligned_cols=134 Identities=19% Similarity=0.266 Sum_probs=113.5
Q ss_pred eeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhh
Q 008209 97 VEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQK 176 (574)
Q Consensus 97 v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~ 176 (574)
++.+|...+..+...... .+....+++++|||++++..++.+++.|.+ .++.+..+||++++.+|..
T Consensus 10 i~~~~~~~~~~~K~~~L~----~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~---------~~~~~~~~hg~~~~~~r~~ 76 (163)
T 2hjv_A 10 IEHAVIQVREENKFSLLK----DVLMTENPDSCIIFCRTKEHVNQLTDELDD---------LGYPCDKIHGGMIQEDRFD 76 (163)
T ss_dssp EEEEEEECCGGGHHHHHH----HHHHHHCCSSEEEECSSHHHHHHHHHHHHH---------TTCCEEEECTTSCHHHHHH
T ss_pred ceEEEEECChHHHHHHHH----HHHHhcCCCcEEEEECCHHHHHHHHHHHHH---------cCCcEEEEeCCCCHHHHHH
Confidence 666666666555544332 222234678999999999999999999986 4678999999999999999
Q ss_pred hcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC-
Q 008209 177 IFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ- 255 (574)
Q Consensus 177 v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~- 255 (574)
+++.|..|. .+|+|||+++++|+|+|++++||+++. |.+..+|.||+||+||.|
T Consensus 77 ~~~~f~~g~-------~~vlv~T~~~~~Gld~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~~R~g~ 131 (163)
T 2hjv_A 77 VMNEFKRGE-------YRYLVATDVAARGIDIENISLVINYDL------------------PLEKESYVHRTGRTGRAGN 131 (163)
T ss_dssp HHHHHHTTS-------CSEEEECGGGTTTCCCSCCSEEEESSC------------------CSSHHHHHHHTTTSSCTTC
T ss_pred HHHHHHcCC-------CeEEEECChhhcCCchhcCCEEEEeCC------------------CCCHHHHHHhccccCcCCC
Confidence 999999888 899999999999999999999998886 889999999999999997
Q ss_pred CCeEEeecccccc
Q 008209 256 PGKCFRLYTEKSF 268 (574)
Q Consensus 256 ~G~~~rl~t~~~~ 268 (574)
+|.|+.+++..+.
T Consensus 132 ~g~~~~~~~~~~~ 144 (163)
T 2hjv_A 132 KGKAISFVTAFEK 144 (163)
T ss_dssp CEEEEEEECGGGH
T ss_pred CceEEEEecHHHH
Confidence 6999999987654
No 53
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.80 E-value=3.8e-20 Score=199.75 Aligned_cols=215 Identities=16% Similarity=0.156 Sum_probs=144.8
Q ss_pred CCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCC-----HHHHHhhh
Q 008209 8 LLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-----AEKFQGYF 82 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~-----~~~~~~~f 82 (574)
..+|+|+|++.+.+.+.. ...++++|||||+|. .....+ +.++...+..++++||||+. ...+..++
T Consensus 171 ~~~Ivv~T~~~l~~~~~~--~~~~~~liIvDEaH~-~~~~~~-----~~~~~~~~~~~~l~lSATp~~~~~~~~~l~~~~ 242 (472)
T 2fwr_A 171 LKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVHH-LPAESY-----VQIAQMSIAPFRLGLTATFEREDGRHEILKEVV 242 (472)
T ss_dssp CCSEEEEEHHHHHHTHHH--HTTTCSEEEEETGGG-TTSTTT-----HHHHHTCCCSEEEEEESCCCCTTSGGGSHHHHT
T ss_pred cCCEEEEEcHHHHHHHHH--hcCCCCEEEEECCcC-CCChHH-----HHHHHhcCCCeEEEEecCccCCCCHHHHHHHHh
Confidence 468999999999887642 124699999999994 222221 22344456788999999994 12344444
Q ss_pred CCCCeEEe-----CCe-eecee--EEeecCCch--------------------------------------------hH-
Q 008209 83 YGAPLMKV-----PGR-LHPVE--IFYTQEPER--------------------------------------------DY- 109 (574)
Q Consensus 83 ~~~~~i~~-----~gr-~~~v~--~~y~~~~~~--------------------------------------------~~- 109 (574)
+. .+... .++ ..+.. ....+.... ..
T Consensus 243 ~~-~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (472)
T 2fwr_A 243 GG-KVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALR 321 (472)
T ss_dssp CC-EEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTH
T ss_pred CC-eEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHH
Confidence 31 11110 000 00000 000000000 00
Q ss_pred -----------HHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhc
Q 008209 110 -----------LEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIF 178 (574)
Q Consensus 110 -----------~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~ 178 (574)
....+..+..+.....++++|||+++.+.++.+++.|. +..+||+++..+|.+++
T Consensus 322 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~--------------~~~~~g~~~~~~R~~~~ 387 (472)
T 2fwr_A 322 AWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL--------------IPAITHRTSREEREEIL 387 (472)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT--------------CCBCCSSSCSHHHHTHH
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC--------------cceeeCCCCHHHHHHHH
Confidence 00112233444444568899999999999998887762 34689999999999999
Q ss_pred CCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCC-
Q 008209 179 EPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPG- 257 (574)
Q Consensus 179 ~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G- 257 (574)
+.|.+|. .+|+|||++++.|+|+|++++||.++. |.|..++.||+|||||.++|
T Consensus 388 ~~F~~g~-------~~vLv~T~~~~~Gldlp~~~~Vi~~~~------------------~~s~~~~~Q~~GR~~R~g~~k 442 (472)
T 2fwr_A 388 EGFRTGR-------FRAIVSSQVLDEGIDVPDANVGVIMSG------------------SGSAREYIQRLGRILRPSKGK 442 (472)
T ss_dssp HHHHHSS-------CSBCBCSSCCCSSSCSCCBSEEEEECC------------------SSCCHHHHHHHHHSBCCCTTT
T ss_pred HHHhCCC-------CCEEEEcCchhcCcccccCcEEEEECC------------------CCCHHHHHHHHhhccCCCCCC
Confidence 9999888 899999999999999999999997554 66788999999999999987
Q ss_pred ---eEEeecccccccc
Q 008209 258 ---KCFRLYTEKSFNN 270 (574)
Q Consensus 258 ---~~~rl~t~~~~~~ 270 (574)
.+|.++++...++
T Consensus 443 ~~~~i~~lv~~~t~ee 458 (472)
T 2fwr_A 443 KEAVLYELISRGTGEV 458 (472)
T ss_dssp CCEEEEEEEECSCC--
T ss_pred ceEEEEEEEeCCCchH
Confidence 5777887766543
No 54
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.79 E-value=1.9e-19 Score=166.30 Aligned_cols=134 Identities=21% Similarity=0.390 Sum_probs=108.3
Q ss_pred eeEEeecCCchh-HHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHh
Q 008209 97 VEIFYTQEPERD-YLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQ 175 (574)
Q Consensus 97 v~~~y~~~~~~~-~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~ 175 (574)
++.+|...+..+ ... .+..+....+++++|||+++++.++.+++.|.+ .++.+..+||++++.+|.
T Consensus 4 i~~~~~~~~~~~~K~~----~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~---------~~~~~~~~~~~~~~~~r~ 70 (165)
T 1fuk_A 4 IKQFYVNVEEEEYKYE----CLTDLYDSISVTQAVIFCNTRRKVEELTTKLRN---------DKFTVSAIYSDLPQQERD 70 (165)
T ss_dssp CEEEEEEEESGGGHHH----HHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHH---------TTCCEEEECTTSCHHHHH
T ss_pred cEEEEEECCcchhHHH----HHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH---------cCCCEEEEECCCCHHHHH
Confidence 444555444444 333 233333334678999999999999999999986 457799999999999999
Q ss_pred hhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC
Q 008209 176 KIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ 255 (574)
Q Consensus 176 ~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~ 255 (574)
.+++.|+.|. .+|+|||+++++|+|+|++++||+++. |.|..+|.||+|||||.|
T Consensus 71 ~~~~~f~~g~-------~~vlv~T~~~~~G~d~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g 125 (165)
T 1fuk_A 71 TIMKEFRSGS-------SRILISTDLLARGIDVQQVSLVINYDL------------------PANKENYIHRIGRGGRFG 125 (165)
T ss_dssp HHHHHHHTTS-------CSEEEEEGGGTTTCCCCSCSEEEESSC------------------CSSGGGGGGSSCSCC---
T ss_pred HHHHHHHcCC-------CEEEEEcChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhcccccCC
Confidence 9999999888 899999999999999999999999886 788999999999999997
Q ss_pred -CCeEEeecccccc
Q 008209 256 -PGKCFRLYTEKSF 268 (574)
Q Consensus 256 -~G~~~rl~t~~~~ 268 (574)
+|.|+.++++.+.
T Consensus 126 ~~g~~~~~~~~~~~ 139 (165)
T 1fuk_A 126 RKGVAINFVTNEDV 139 (165)
T ss_dssp --CEEEEEEETTTH
T ss_pred CCceEEEEEcchHH
Confidence 6999999987654
No 55
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.79 E-value=6.1e-19 Score=197.26 Aligned_cols=169 Identities=20% Similarity=0.160 Sum_probs=123.6
Q ss_pred CccEEEEccCCCHHHHHhhhCCCCeEEeC----CeeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHH
Q 008209 63 DLKLVVMSATLEAEKFQGYFYGAPLMKVP----GRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEE 138 (574)
Q Consensus 63 ~~klvlmSATl~~~~~~~~f~~~~~i~~~----gr~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~e 138 (574)
..+++++|||+....+.. . ..++... +...|. +... +........+..+.... ..++++|||++|+..
T Consensus 386 ~~q~i~~SAT~~~~~~~~--~-~~~~~~~~r~~~l~~p~-i~v~--~~~~~~~~Ll~~l~~~~--~~~~~vlVf~~t~~~ 457 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEH--T-DEMVEQIIRPTGLLDPL-IDVR--PIEGQIDDLIGEIQARI--ERNERVLVTTLTKKM 457 (661)
T ss_dssp CSEEEEECSSCCHHHHHH--C-SSCEEECCCTTCCCCCE-EEEE--CSTTHHHHHHHHHHHHH--TTTCEEEEECSSHHH
T ss_pred CCCEEEEecCCChhHHHh--h-hCeeeeeecccCCCCCe-EEEe--cccchHHHHHHHHHHHH--hcCCeEEEEECCHHH
Confidence 568999999997544432 1 1112221 222232 1111 11223333333333322 357799999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCC
Q 008209 139 IEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPG 218 (574)
Q Consensus 139 i~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g 218 (574)
++.+++.|.+ .++.+..+||++++.+|..+++.++.|. .+|+|||+++++|+|+|++++||+++
T Consensus 458 ae~L~~~L~~---------~gi~~~~lh~~~~~~~R~~~l~~f~~g~-------~~VLVaT~~l~~GlDip~v~lVi~~d 521 (661)
T 2d7d_A 458 SEDLTDYLKE---------IGIKVNYLHSEIKTLERIEIIRDLRLGK-------YDVLVGINLLREGLDIPEVSLVAILD 521 (661)
T ss_dssp HHHHHHHHHH---------TTCCEEEECTTCCHHHHHHHHHHHHHTS-------CSEEEESCCCSTTCCCTTEEEEEETT
T ss_pred HHHHHHHHHh---------cCCCeEEEeCCCCHHHHHHHHHHHhcCC-------eEEEEecchhhCCcccCCCCEEEEeC
Confidence 9999999987 3567888999999999999999998888 89999999999999999999999877
Q ss_pred cccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEEeecccccc
Q 008209 219 FAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSF 268 (574)
Q Consensus 219 ~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl~t~~~~ 268 (574)
..+ .|. |.|..+|.||+|||||.++|.|+.++++...
T Consensus 522 ~d~-------~G~------p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 522 ADK-------EGF------LRSERSLIQTIGRAARNAEGRVIMYADKITK 558 (661)
T ss_dssp TTC-------CTT------TTSHHHHHHHHHTTTTSTTCEEEEECSSCCH
T ss_pred ccc-------ccC------CCCHHHHHHHhCcccCCCCCEEEEEEeCCCH
Confidence 511 121 7788999999999999999999999886543
No 56
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.78 E-value=2.1e-19 Score=195.80 Aligned_cols=213 Identities=14% Similarity=0.141 Sum_probs=139.8
Q ss_pred cCCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCCH-----HHHHh
Q 008209 7 VLLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLEA-----EKFQG 80 (574)
Q Consensus 7 ~~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~~-----~~~~~ 80 (574)
...+|+|+|++.|.+. ....+.++++|||||+|.-+ . + ....+++ ..+..++++||||+.. -.+..
T Consensus 203 ~~~~I~i~T~~~l~~~--~~~~~~~~~liIiDE~H~~~-~-~----~~~~il~~~~~~~~~l~lSATp~~~~~~~~~~~~ 274 (510)
T 2oca_A 203 NDAPVVVGTWQTVVKQ--PKEWFSQFGMMMNDECHLAT-G-K----SISSIISGLNNCMFKFGLSGSLRDGKANIMQYVG 274 (510)
T ss_dssp TTCSEEEEEHHHHTTS--CGGGGGGEEEEEEETGGGCC-H-H----HHHHHGGGCTTCCEEEEEESCGGGCSSCHHHHHH
T ss_pred cCCcEEEEeHHHHhhc--hhhhhhcCCEEEEECCcCCC-c-c----cHHHHHHhcccCcEEEEEEeCCCCCcccHHHhHH
Confidence 3578999999976543 12357899999999999632 2 2 2333333 3467799999999932 12334
Q ss_pred hhCCCCeEEeCC-------eeeceeEE--eecCCc--------hhHHH-------------HHHHHHHHHHhcCCCCCEE
Q 008209 81 YFYGAPLMKVPG-------RLHPVEIF--YTQEPE--------RDYLE-------------AAIRTVVQIHMCEPSGDIL 130 (574)
Q Consensus 81 ~f~~~~~i~~~g-------r~~~v~~~--y~~~~~--------~~~~~-------------~~~~~~~~i~~~~~~g~iL 130 (574)
+++. .++.++. ...|..+. ....+. ..+.. .....+.... ...+..++
T Consensus 275 ~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~i 352 (510)
T 2oca_A 275 MFGE-IFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLA-QKDENAFV 352 (510)
T ss_dssp HHCS-EECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHH-TTTCEEEE
T ss_pred hhCC-eEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHH-hcCCCeEE
Confidence 5532 2222221 11111111 111110 11111 1111122222 12344566
Q ss_pred EEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEec-ccccccccCC
Q 008209 131 VFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVST-NIAETSLTID 209 (574)
Q Consensus 131 VFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT-~iae~gitip 209 (574)
||++ .++++.+++.|.+ ....+..+||+++..+|.++++.|.+|. .+|+||| +++++|+|+|
T Consensus 353 vf~~-~~~~~~l~~~L~~---------~~~~v~~~~g~~~~~~r~~i~~~f~~g~-------~~vLv~T~~~~~~GiDip 415 (510)
T 2oca_A 353 MFKH-VSHGKAIFDLIKN---------EYDKVYYVSGEVDTETRNIMKTLAENGK-------GIIIVASYGVFSTGISVK 415 (510)
T ss_dssp EESS-HHHHHHHHHHHHT---------TCSSEEEESSSTTHHHHHHHHHHHHHCC-------SCEEEEEHHHHHHSCCCC
T ss_pred EEec-HHHHHHHHHHHHH---------cCCCeEEEECCCCHHHHHHHHHHHhCCC-------CCEEEEEcChhhcccccc
Confidence 6666 8888888888875 2237899999999999999999999887 8999999 9999999999
Q ss_pred CeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCe-EEeecc
Q 008209 210 GIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGK-CFRLYT 264 (574)
Q Consensus 210 ~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~-~~rl~t 264 (574)
++++||..+. |.|.+++.||+||+||.++|. ++.+|+
T Consensus 416 ~v~~vi~~~~------------------~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 416 NLHHVVLAHG------------------VKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp SEEEEEESSC------------------CCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cCcEEEEeCC------------------CCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999997665 667889999999999999854 667766
No 57
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.78 E-value=4.7e-19 Score=164.81 Aligned_cols=133 Identities=12% Similarity=0.248 Sum_probs=113.2
Q ss_pred ceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHh
Q 008209 96 PVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQ 175 (574)
Q Consensus 96 ~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~ 175 (574)
.++.+|...+..+.... +..+....+++++|||++++..++.+++.|.+ .++.+..+||++++.+|.
T Consensus 5 ~i~q~~~~~~~~~K~~~----L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~---------~~~~~~~~hg~~~~~~r~ 71 (172)
T 1t5i_A 5 GLQQYYVKLKDNEKNRK----LFDLLDVLEFNQVVIFVKSVQRCIALAQLLVE---------QNFPAIAIHRGMPQEERL 71 (172)
T ss_dssp CCEEEEEECCGGGHHHH----HHHHHHHSCCSSEEEECSSHHHHHHHHHHHHH---------TTCCEEEECTTSCHHHHH
T ss_pred CeEEEEEECChHHHHHH----HHHHHHhCCCCcEEEEECCHHHHHHHHHHHHh---------cCCCEEEEECCCCHHHHH
Confidence 35666666665555443 33344445678999999999999999999986 467799999999999999
Q ss_pred hhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC
Q 008209 176 KIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ 255 (574)
Q Consensus 176 ~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~ 255 (574)
.+++.|..|. .+|+|||+++++|+|+|++++||+++. |.|.++|.||+|||||.|
T Consensus 72 ~~~~~f~~g~-------~~vLvaT~~~~~Gldi~~~~~Vi~~d~------------------p~~~~~~~qr~GR~~R~g 126 (172)
T 1t5i_A 72 SRYQQFKDFQ-------RRILVATNLFGRGMDIERVNIAFNYDM------------------PEDSDTYLHRVARAGRFG 126 (172)
T ss_dssp HHHHHHHTTS-------CSEEEESSCCSTTCCGGGCSEEEESSC------------------CSSHHHHHHHHHHHTGGG
T ss_pred HHHHHHHCCC-------CcEEEECCchhcCcchhhCCEEEEECC------------------CCCHHHHHHHhcccccCC
Confidence 9999999888 899999999999999999999998876 889999999999999998
Q ss_pred -CCeEEeecccc
Q 008209 256 -PGKCFRLYTEK 266 (574)
Q Consensus 256 -~G~~~rl~t~~ 266 (574)
+|.|+.+++..
T Consensus 127 ~~g~~~~~~~~~ 138 (172)
T 1t5i_A 127 TKGLAITFVSDE 138 (172)
T ss_dssp CCCEEEEEECSH
T ss_pred CCcEEEEEEcCh
Confidence 59999999864
No 58
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.77 E-value=1.3e-18 Score=194.64 Aligned_cols=168 Identities=16% Similarity=0.107 Sum_probs=123.0
Q ss_pred CccEEEEccCCCHHHHHhhhCCCCeEEeCC----eeeceeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHH
Q 008209 63 DLKLVVMSATLEAEKFQGYFYGAPLMKVPG----RLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEE 138 (574)
Q Consensus 63 ~~klvlmSATl~~~~~~~~f~~~~~i~~~g----r~~~v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~e 138 (574)
..+++++|||+....+.. . ..++.... ...|. +...+ ........+..+.... ..++++|||++|+..
T Consensus 380 ~~q~i~~SAT~~~~~~~~--~-~~~~~~~~r~~~l~~p~-i~v~~--~~~~~~~Ll~~l~~~~--~~~~~vlVf~~t~~~ 451 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH--S-GRVVEQIIRPTGLLDPL-VRVKP--TENQILDLMEGIRERA--ARGERTLVTVLTVRM 451 (664)
T ss_dssp CSEEEEEESSCCHHHHHH--C-SEEEEECSCTTCCCCCE-EEEEC--STTHHHHHHHHHHHHH--HTTCEEEEECSSHHH
T ss_pred cCCEEEEecCCCHHHHHh--h-hCeeeeeeccCCCCCCe-EEEec--ccchHHHHHHHHHHHH--hcCCEEEEEECCHHH
Confidence 568999999997554432 1 11222211 12222 11111 1223333333333322 246799999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCC
Q 008209 139 IEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPG 218 (574)
Q Consensus 139 i~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g 218 (574)
++.+++.|.+ .++.+..+||++++.+|..+++.++.|. .+|+|||+++++|+|+|++++||+++
T Consensus 452 ae~L~~~L~~---------~gi~~~~lh~~~~~~~R~~~~~~f~~g~-------~~VLvaT~~l~~GlDip~v~lVI~~d 515 (664)
T 1c4o_A 452 AEELTSFLVE---------HGIRARYLHHELDAFKRQALIRDLRLGH-------YDCLVGINLLREGLDIPEVSLVAILD 515 (664)
T ss_dssp HHHHHHHHHH---------TTCCEEEECTTCCHHHHHHHHHHHHTTS-------CSEEEESCCCCTTCCCTTEEEEEETT
T ss_pred HHHHHHHHHh---------cCCCceeecCCCCHHHHHHHHHHhhcCC-------ceEEEccChhhcCccCCCCCEEEEeC
Confidence 9999999987 3567888999999999999999999888 89999999999999999999999877
Q ss_pred cccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCCCeEEeeccccc
Q 008209 219 FAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKS 267 (574)
Q Consensus 219 ~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G~~~rl~t~~~ 267 (574)
..+. |. |.|..+|+||+|||||.++|.|+.+++...
T Consensus 516 ~d~~-------G~------p~s~~~~iQr~GRagR~~~G~~i~~~~~~~ 551 (664)
T 1c4o_A 516 ADKE-------GF------LRSERSLIQTIGRAARNARGEVWLYADRVS 551 (664)
T ss_dssp TTSC-------SG------GGSHHHHHHHHGGGTTSTTCEEEEECSSCC
T ss_pred Cccc-------CC------CCCHHHHHHHHCccCcCCCCEEEEEEcCCC
Confidence 5221 21 778999999999999999999999987654
No 59
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.77 E-value=6.4e-19 Score=166.68 Aligned_cols=131 Identities=16% Similarity=0.199 Sum_probs=108.5
Q ss_pred eeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhh
Q 008209 97 VEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQK 176 (574)
Q Consensus 97 v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~ 176 (574)
+..+|...+..+.+. .+..+.. ..++++|||++++.+++.+++.|.+ .++.+..+||++++.+|..
T Consensus 30 i~q~~~~~~~~~K~~----~L~~~l~-~~~~~~lVF~~~~~~~~~l~~~L~~---------~g~~~~~lhg~~~~~~R~~ 95 (191)
T 2p6n_A 30 VIQEVEYVKEEAKMV----YLLECLQ-KTPPPVLIFAEKKADVDAIHEYLLL---------KGVEAVAIHGGKDQEERTK 95 (191)
T ss_dssp SEEEEEECCGGGHHH----HHHHHHT-TSCSCEEEECSCHHHHHHHHHHHHH---------HTCCEEEECTTSCHHHHHH
T ss_pred ceEEEEEcChHHHHH----HHHHHHH-hCCCCEEEEECCHHHHHHHHHHHHH---------cCCcEEEEeCCCCHHHHHH
Confidence 555555555554443 3344443 3467899999999999999999976 3567899999999999999
Q ss_pred hcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC-
Q 008209 177 IFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ- 255 (574)
Q Consensus 177 v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~- 255 (574)
+++.|+.|. .+|+|||+++++|+|+|++++||+++. |.+..+|.||+||+||.|
T Consensus 96 ~l~~F~~g~-------~~vLvaT~~~~~Gldi~~v~~VI~~d~------------------p~~~~~~~qr~GR~gR~g~ 150 (191)
T 2p6n_A 96 AIEAFREGK-------KDVLVATDVASKGLDFPAIQHVINYDM------------------PEEIENYVHRIGRTGCSGN 150 (191)
T ss_dssp HHHHHHHTS-------CSEEEECHHHHTTCCCCCCSEEEESSC------------------CSSHHHHHHHHTTSCC---
T ss_pred HHHHHhcCC-------CEEEEEcCchhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhCccccCCC
Confidence 999999888 899999999999999999999998876 889999999999999997
Q ss_pred CCeEEeecccc
Q 008209 256 PGKCFRLYTEK 266 (574)
Q Consensus 256 ~G~~~rl~t~~ 266 (574)
+|.|+.+++..
T Consensus 151 ~g~~i~l~~~~ 161 (191)
T 2p6n_A 151 TGIATTFINKA 161 (191)
T ss_dssp CCEEEEEECTT
T ss_pred CcEEEEEEcCc
Confidence 69999999865
No 60
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.77 E-value=8.7e-19 Score=164.95 Aligned_cols=135 Identities=16% Similarity=0.173 Sum_probs=98.9
Q ss_pred eeEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhh
Q 008209 97 VEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQK 176 (574)
Q Consensus 97 v~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~ 176 (574)
++.+|...+..+........+.. ..+++++|||++++..++.+++.|.. .++.+..+||++++.+|..
T Consensus 20 i~q~~~~v~~~~K~~~L~~ll~~---~~~~~k~lVF~~~~~~~~~l~~~L~~---------~g~~~~~lhg~~~~~~r~~ 87 (185)
T 2jgn_A 20 ITQKVVWVEESDKRSFLLDLLNA---TGKDSLTLVFVETKKGADSLEDFLYH---------EGYACTSIHGDRSQRDREE 87 (185)
T ss_dssp EEEEEEECCGGGHHHHHHHHHHH---C-CCSCEEEEESCHHHHHHHHHHHHH---------TTCCEEEEC--------CH
T ss_pred ceEEEEEeCcHHHHHHHHHHHHh---cCCCCeEEEEECCHHHHHHHHHHHHH---------cCCceEEEeCCCCHHHHHH
Confidence 56666655555554433332222 12578999999999999999999986 4578999999999999999
Q ss_pred hcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC-
Q 008209 177 IFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ- 255 (574)
Q Consensus 177 v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~- 255 (574)
+++.|..|. .+|+|||+++++|+|+|++++||+++. |.|..+|.||+|||||.|
T Consensus 88 ~~~~f~~g~-------~~vLvaT~~~~~Gldi~~~~~VI~~d~------------------p~s~~~~~Qr~GR~~R~g~ 142 (185)
T 2jgn_A 88 ALHQFRSGK-------SPILVATAVAARGLDISNVKHVINFDL------------------PSDIEEYVHRIGRTGRVGN 142 (185)
T ss_dssp HHHHHHHTS-------SSEEEEEC------CCCSBSEEEESSC------------------CSSHHHHHHHHTTBCCTTS
T ss_pred HHHHHHcCC-------CeEEEEcChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHccccCCCCC
Confidence 999999888 899999999999999999999998776 789999999999999998
Q ss_pred CCeEEeecccccc
Q 008209 256 PGKCFRLYTEKSF 268 (574)
Q Consensus 256 ~G~~~rl~t~~~~ 268 (574)
+|.|+.++++.+.
T Consensus 143 ~g~~~~~~~~~~~ 155 (185)
T 2jgn_A 143 LGLATSFFNERNI 155 (185)
T ss_dssp CEEEEEEECGGGG
T ss_pred CcEEEEEEchhhH
Confidence 6999999997665
No 61
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.77 E-value=2.3e-18 Score=191.09 Aligned_cols=222 Identities=15% Similarity=0.140 Sum_probs=135.3
Q ss_pred cCCCeEEEchHHHHHHHhcC-----CCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCC---HHHH
Q 008209 7 VLLGGRYLTDGMLLREAMTD-----PLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE---AEKF 78 (574)
Q Consensus 7 ~~~~I~~~T~g~Ll~~l~~~-----~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~---~~~~ 78 (574)
.+.+|+|+|++.|.+.+... -....+++|||||+| |....+ ....+.++...+..++|+||||+. ...+
T Consensus 273 ~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH-~~~~~~--~~~~~~il~~~~~~~~l~lTATP~~~~~~~~ 349 (590)
T 3h1t_A 273 KSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECH-RGSARD--NSNWREILEYFEPAFQIGMTATPLREDNRDT 349 (590)
T ss_dssp SSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC------------CHHHHHHSTTSEEEEEESSCSCTTTHHH
T ss_pred CCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCc-cccccc--hHHHHHHHHhCCcceEEEeccccccccchhH
Confidence 35789999999998875422 235679999999999 444321 123344445555688999999983 3456
Q ss_pred HhhhCCCCeEEeC-------CeeeceeEEeec-----------------------------CCchh------HHHHHHHH
Q 008209 79 QGYFYGAPLMKVP-------GRLHPVEIFYTQ-----------------------------EPERD------YLEAAIRT 116 (574)
Q Consensus 79 ~~~f~~~~~i~~~-------gr~~~v~~~y~~-----------------------------~~~~~------~~~~~~~~ 116 (574)
..+|+. ++.... |-..|....... ..... ........
T Consensus 350 ~~~f~~-~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~ 428 (590)
T 3h1t_A 350 YRYFGN-PIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKH 428 (590)
T ss_dssp HHHSCS-CSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHHHHHH
T ss_pred HHHcCC-ceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHH
Confidence 677753 333211 111111111000 00000 00111122
Q ss_pred HHHHH-hcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEE
Q 008209 117 VVQIH-MCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKI 195 (574)
Q Consensus 117 ~~~i~-~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kv 195 (574)
+.... ...+.+++|||+++++.++.+++.|.+........ ..-.+..+||.++. +|..+++.|.+|.. ....|
T Consensus 429 l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~-~~~~~~~i~g~~~~-~r~~~l~~F~~~~~----~~~~i 502 (590)
T 3h1t_A 429 LTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRK-HPDYVARVTSEEGK-IGKGHLSRFQELET----STPVI 502 (590)
T ss_dssp HHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTT-CTTSEEECSSTTHH-HHHHHHHHHHCTTC----CCCCE
T ss_pred HHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhcc-CCCeEEEEeCCChH-HHHHHHHHHhCCCC----CCCEE
Confidence 22222 22456899999999999999999998743321111 12247788998753 68888888877650 01348
Q ss_pred EEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCC
Q 008209 196 VVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQP 256 (574)
Q Consensus 196 ivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~ 256 (574)
++||+++++|||+|++++||.... |-|...|.||+||+||.++
T Consensus 503 lvtt~~l~~GiDip~v~~Vi~~~~------------------~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 503 LTTSQLLTTGVDAPTCKNVVLARV------------------VNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp EEESSTTTTTCCCTTEEEEEEESC------------------CCCHHHHHHHHTTSCCCBG
T ss_pred EEECChhhcCccchheeEEEEEec------------------CCChHHHHHHHhhhcccCc
Confidence 899999999999999999995443 6788999999999999886
No 62
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.76 E-value=9.2e-18 Score=186.43 Aligned_cols=123 Identities=19% Similarity=0.202 Sum_probs=99.9
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCC
Q 008209 107 RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSK 186 (574)
Q Consensus 107 ~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~ 186 (574)
.+...+.+..+...+ ..+.++|||++|++.++.+++.|.+ .++....|||.....++..+.+.++.|
T Consensus 424 ~~K~~al~~~i~~~~--~~gqpvLVft~sie~se~Ls~~L~~---------~gi~~~vLnak~~~rEa~iia~agr~G-- 490 (853)
T 2fsf_A 424 AEKIQAIIEDIKERT--AKGQPVLVGTISIEKSELVSNELTK---------AGIKHNVLNAKFHANEAAIVAQAGYPA-- 490 (853)
T ss_dssp HHHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHH---------TTCCCEECCTTCHHHHHHHHHTTTSTT--
T ss_pred HHHHHHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHH---------CCCCEEEecCChhHHHHHHHHhcCCCC--
Confidence 344444444443333 3567899999999999999999987 467788899998888887777777654
Q ss_pred CCCCCCcEEEEecccccccccCCC--------------------------------e-----EEEEcCCcccceeecCCC
Q 008209 187 EGGPPGRKIVVSTNIAETSLTIDG--------------------------------I-----VYVIDPGFAKQKVYNPRV 229 (574)
Q Consensus 187 ~~~~~~~kvivaT~iae~gitip~--------------------------------v-----~~VID~g~~k~~~y~~~~ 229 (574)
.|+||||+|+||+||+. | .+||++.+
T Consensus 491 -------~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~---------- 553 (853)
T 2fsf_A 491 -------AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTER---------- 553 (853)
T ss_dssp -------CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSC----------
T ss_pred -------eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccC----------
Confidence 59999999999999997 4 69999887
Q ss_pred CcceeeeeeccHhhHHHhcccCCCCC-CCeEEeeccccc
Q 008209 230 RVESLLVSPISKASAHQRSGRAGRTQ-PGKCFRLYTEKS 267 (574)
Q Consensus 230 ~~~~l~~~~is~~~~~QR~GRaGR~~-~G~~~rl~t~~~ 267 (574)
|-|...|.||+||+||.| ||.+..+.+.++
T Consensus 554 --------pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 554 --------HESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp --------CSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred --------CCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 899999999999999999 699888877654
No 63
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.73 E-value=3.8e-17 Score=181.80 Aligned_cols=122 Identities=21% Similarity=0.158 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCC
Q 008209 108 DYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKE 187 (574)
Q Consensus 108 ~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~ 187 (574)
+.....+..+...+. .+.++|||++|++.++.+++.|.+ .++....|||.....++..+.+.+..|
T Consensus 444 ~K~~al~~~i~~~~~--~gqpvLVft~Sie~sE~Ls~~L~~---------~Gi~~~vLnak~~~rEa~iia~agr~G--- 509 (922)
T 1nkt_A 444 AKYIAVVDDVAERYA--KGQPVLIGTTSVERSEYLSRQFTK---------RRIPHNVLNAKYHEQEATIIAVAGRRG--- 509 (922)
T ss_dssp HHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHHHHH---------TTCCCEEECSSCHHHHHHHHHTTTSTT---
T ss_pred HHHHHHHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHH---------CCCCEEEecCChhHHHHHHHHhcCCCC---
Confidence 344444444444432 456899999999999999999987 467788899998777776666666654
Q ss_pred CCCCCcEEEEecccccccccCCCe----------------------------------------------------EEEE
Q 008209 188 GGPPGRKIVVSTNIAETSLTIDGI----------------------------------------------------VYVI 215 (574)
Q Consensus 188 ~~~~~~kvivaT~iae~gitip~v----------------------------------------------------~~VI 215 (574)
.|+||||+|++|+||+.+ .+||
T Consensus 510 ------~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI 583 (922)
T 1nkt_A 510 ------GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVL 583 (922)
T ss_dssp ------CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEE
T ss_pred ------eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEE
Confidence 599999999999999975 6999
Q ss_pred cCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC-CCeEEeeccccc
Q 008209 216 DPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ-PGKCFRLYTEKS 267 (574)
Q Consensus 216 D~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~-~G~~~rl~t~~~ 267 (574)
++.+ |-|...|.||+||+||.| ||.+..+.+.++
T Consensus 584 ~te~------------------pes~riy~qr~GRTGRqGdpG~s~fflSleD 618 (922)
T 1nkt_A 584 GTER------------------HESRRIDNQLRGRSGRQGDPGESRFYLSLGD 618 (922)
T ss_dssp ECSC------------------CSSHHHHHHHHHTSSGGGCCEEEEEEEETTS
T ss_pred eccC------------------CCCHHHHHHHhcccccCCCCeeEEEEechhH
Confidence 8887 889999999999999999 699888877554
No 64
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.56 E-value=4.1e-19 Score=164.82 Aligned_cols=118 Identities=15% Similarity=0.252 Sum_probs=104.6
Q ss_pred HHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEE
Q 008209 117 VVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIV 196 (574)
Q Consensus 117 ~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvi 196 (574)
+..+....+++++|||++++..++.+++.|.+ .++.+..+||++++.+|..+++.|..|. .+|+
T Consensus 21 l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~---------~~~~~~~~~g~~~~~~r~~~~~~f~~g~-------~~vL 84 (170)
T 2yjt_D 21 LVHLLKQPEATRSIVFVRKRERVHELANWLRE---------AGINNCYLEGEMVQGKRNEAIKRLTEGR-------VNVL 84 (170)
Confidence 33444444678999999999999999999976 3677899999999999999999999988 8999
Q ss_pred EecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC-CCeEEeecccccc
Q 008209 197 VSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ-PGKCFRLYTEKSF 268 (574)
Q Consensus 197 vaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~-~G~~~rl~t~~~~ 268 (574)
|||+++++|+|+|++++||+++. |.|..+|.||+||+||.| +|.|+.+++..+.
T Consensus 85 vaT~~~~~Gid~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~ 139 (170)
T 2yjt_D 85 VATDVAARGIDIPDVSHVFNFDM------------------PRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 139 (170)
Confidence 99999999999999999998876 788999999999999998 6999999987654
No 65
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.65 E-value=2.2e-16 Score=183.90 Aligned_cols=123 Identities=11% Similarity=0.114 Sum_probs=100.9
Q ss_pred HHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcE
Q 008209 115 RTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRK 194 (574)
Q Consensus 115 ~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~k 194 (574)
..+..+....+++++|||++++..++.+++.|.+. .++.+..+||++++.+|.++++.|..|. ...+
T Consensus 492 ~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~--------~g~~~~~lhG~~~~~~R~~~l~~F~~g~-----~~~~ 558 (968)
T 3dmq_A 492 EWLMGYLTSHRSQKVLVICAKAATALQLEQVLRER--------EGIRAAVFHEGMSIIERDRAAAWFAEED-----TGAQ 558 (968)
T ss_dssp HHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTT--------TCCCEEEECTTSCTTHHHHHHHHHHSTT-----SSCE
T ss_pred HHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHH--------cCCcEEEEeCCCCHHHHHHHHHHHhCCC-----Cccc
Confidence 34445544467899999999999999999999741 3678999999999999999999998763 2379
Q ss_pred EEEecccccccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCC-C--eEEeecccccc
Q 008209 195 IVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQP-G--KCFRLYTEKSF 268 (574)
Q Consensus 195 vivaT~iae~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~-G--~~~rl~t~~~~ 268 (574)
|+|||+++++|+|+|++++||.++. |-+.+.|.||.||+||.|. | .+|+++.+...
T Consensus 559 vLvaT~v~~~GlDl~~~~~VI~~d~------------------p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ 617 (968)
T 3dmq_A 559 VLLCSEIGSEGRNFQFASHMVMFDL------------------PFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTA 617 (968)
T ss_dssp EEECSCCTTCSSCCTTCCEEECSSC------------------CSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSH
T ss_pred EEEecchhhcCCCcccCcEEEEecC------------------CCCHHHHHHHhhccccCCCCceEEEEEecCCChH
Confidence 9999999999999999999997665 7788999999999999985 4 35555554433
No 66
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.61 E-value=2.3e-15 Score=164.12 Aligned_cols=161 Identities=19% Similarity=0.273 Sum_probs=122.3
Q ss_pred cEEEEccCCC--HHHHHhhhCCCCeEEeCCeeec---e---eEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCH
Q 008209 65 KLVVMSATLE--AEKFQGYFYGAPLMKVPGRLHP---V---EIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGE 136 (574)
Q Consensus 65 klvlmSATl~--~~~~~~~f~~~~~i~~~gr~~~---v---~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~ 136 (574)
|+.+||+|+. .+.|.+.+ +..++.+|... | + ...|. ...+...+.+..+...+. .+.++|||++|+
T Consensus 411 kL~GMTGTa~te~~Ef~~iY-~l~vv~IPtnk-p~~R~d~~d~vy~--t~~eK~~al~~~I~~~~~--~gqpVLVFt~S~ 484 (822)
T 3jux_A 411 KLAGMTGTAKTEESEFVQVY-GMEVVVIPTHK-PMIRKDHDDLVFR--TQKEKYEKIVEEIEKRYK--KGQPVLVGTTSI 484 (822)
T ss_dssp EEEEEESSCGGGHHHHHHHS-CCCEEECCCSS-CCCCEECCCEEES--SHHHHHHHHHHHHHHHHH--HTCCEEEEESSH
T ss_pred HHeEECCCCchHHHHHHHHh-CCeEEEECCCC-CcceeecCcEEEe--cHHHHHHHHHHHHHHHhh--CCCCEEEEECCH
Confidence 7999999994 56777766 46788886531 2 1 12332 334555555555655543 467899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCC-------
Q 008209 137 EEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTID------- 209 (574)
Q Consensus 137 ~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip------- 209 (574)
+.++.+++.|.+ .++....+||+....++..+...+.. ..|+||||+|++|+||+
T Consensus 485 e~sE~Ls~~L~~---------~Gi~~~vLhgkq~~rE~~ii~~ag~~---------g~VtVATdmAgRGtDI~lg~~V~~ 546 (822)
T 3jux_A 485 EKSELLSSMLKK---------KGIPHQVLNAKYHEKEAEIVAKAGQK---------GMVTIATNMAGRGTDIKLGPGVAE 546 (822)
T ss_dssp HHHHHHHHHHHT---------TTCCCEEECSCHHHHHHHHHHHHHST---------TCEEEEETTTTTTCCCCCCTTTTT
T ss_pred HHHHHHHHHHHH---------CCCCEEEeeCCchHHHHHHHHhCCCC---------CeEEEEcchhhCCcCccCCcchhh
Confidence 999999999986 46778889999655555444444433 46999999999999998
Q ss_pred -CeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC-CCeEEeeccccc
Q 008209 210 -GIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ-PGKCFRLYTEKS 267 (574)
Q Consensus 210 -~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~-~G~~~rl~t~~~ 267 (574)
|+.+||++.+ |-|...|.||.|||||.| ||.++.+.+.++
T Consensus 547 ~GglhVInte~------------------Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 547 LGGLCIIGTER------------------HESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp TTSCEEEESSC------------------CSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred cCCCEEEecCC------------------CCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 7779999887 899999999999999999 699998888765
No 67
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.58 E-value=2.9e-15 Score=162.70 Aligned_cols=115 Identities=17% Similarity=0.117 Sum_probs=91.2
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccccc
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAE 203 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae 203 (574)
.++.++|||+.....++.+.+.|.+.. +..+..+||+++..+|.++++.|.++. ..+.+++||++++
T Consensus 339 ~~~~k~lvF~~~~~~~~~l~~~l~~~~--------~~~~~~~~g~~~~~~R~~~~~~F~~~~-----~~~vil~st~~~~ 405 (500)
T 1z63_A 339 DEGDKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNP-----SVKFIVLSVKAGG 405 (500)
T ss_dssp TTTCCEEEECSCHHHHHHHHHHHHHHH--------TCCCCEEETTSCHHHHHHHHHHHHHCT-----TCCCCEEECCCC-
T ss_pred ccCCcEEEEEehHHHHHHHHHHHHHhh--------CCCeEEEECCCCHHHHHHHHHHhcCCC-----CCCEEEEeccccc
Confidence 357899999999999999999987632 355778999999999999999998763 1134899999999
Q ss_pred ccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCC---CeEEeeccccccc
Q 008209 204 TSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQP---GKCFRLYTEKSFN 269 (574)
Q Consensus 204 ~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~---G~~~rl~t~~~~~ 269 (574)
.|+|+|++++||.++. |-+.+.+.||.||++|.|. ..+|++.++...+
T Consensus 406 ~Glnl~~~~~vi~~d~------------------~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tie 456 (500)
T 1z63_A 406 FGINLTSANRVIHFDR------------------WWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLE 456 (500)
T ss_dssp CCCCCTTCSEEEESSC------------------CSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHH
T ss_pred CCCchhhCCEEEEeCC------------------CCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHH
Confidence 9999999999997655 6677889999999999984 4568888876553
No 68
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.53 E-value=1.1e-13 Score=160.50 Aligned_cols=219 Identities=9% Similarity=0.050 Sum_probs=141.4
Q ss_pred cCCCeEEEchHHHHHHHhcC---CCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCH-------H
Q 008209 7 VLLGGRYLTDGMLLREAMTD---PLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-------E 76 (574)
Q Consensus 7 ~~~~I~~~T~g~Ll~~l~~~---~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~-------~ 76 (574)
.+.+|+|+|++.|...+... +.+.++.+||+||+| |+...+. .+.+....++.++++||||+.. .
T Consensus 374 ~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAH-rs~~~~~----~~~I~~~~p~a~~lgfTATP~~~~~~~~~~ 448 (1038)
T 2w00_A 374 DDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECH-RSQFGEA----QKNLKKKFKRYYQFGFTGTPIFPENALGSE 448 (1038)
T ss_dssp SSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCC-TTHHHHH----HHHHHHHCSSEEEEEEESSCCCSTTCTTSC
T ss_pred CCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccc-hhcchHH----HHHHHHhCCcccEEEEeCCccccccchhhh
Confidence 35789999999999877543 246788999999999 6665443 3334445577899999999832 3
Q ss_pred HHHhhhCCCCeEEe-------CCeeeceeEEeecCC----------c---------------hhHHHHHHHHHHHHHhc-
Q 008209 77 KFQGYFYGAPLMKV-------PGRLHPVEIFYTQEP----------E---------------RDYLEAAIRTVVQIHMC- 123 (574)
Q Consensus 77 ~~~~~f~~~~~i~~-------~gr~~~v~~~y~~~~----------~---------------~~~~~~~~~~~~~i~~~- 123 (574)
....+|++ ++... +|-..|+.+.|.... . ++.+...+..++.....
T Consensus 449 ~t~~~FG~-~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~ 527 (1038)
T 2w00_A 449 TTASVFGR-ELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQK 527 (1038)
T ss_dssp CHHHHHCS-EEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC-eeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Confidence 55677754 22221 233445555554311 0 01111222223222211
Q ss_pred -------CCCCCEEEEcCCHHHHHHHHHHHHHHHhhc---CCCCCCeEE-EEcCCC----------C----------CHH
Q 008209 124 -------EPSGDILVFLTGEEEIEDACRKITKEITNM---GDQVGPVKV-VPLYST----------L----------PPA 172 (574)
Q Consensus 124 -------~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~---~~~~~~~~v-~~lhs~----------l----------~~~ 172 (574)
..++++|||++++..+..+++.|.+..... .+...++.+ +.+|+. + ++.
T Consensus 528 ~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~ 607 (1038)
T 2w00_A 528 THRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSS 607 (1038)
T ss_dssp TTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHH
T ss_pred hhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchh
Confidence 134689999999999999999998754221 011122444 445542 2 221
Q ss_pred -----------------------------HHhhhcCCCCCCCCCCCCCCcEEEEecccccccccCCCeEEEEcCCcccce
Q 008209 173 -----------------------------MQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQK 223 (574)
Q Consensus 173 -----------------------------~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~gitip~v~~VID~g~~k~~ 223 (574)
+|..+.+.|+.|. .+|+|+|+++.+|+|+|.+.+ +..+
T Consensus 608 ~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~-------i~ILIvvd~lltGfDiP~l~t-lylD----- 674 (1038)
T 2w00_A 608 AKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQD-------IDLLIVVGMFLTGFDAPTLNT-LFVD----- 674 (1038)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTS-------SSEEEESSTTSSSCCCTTEEE-EEEE-----
T ss_pred HHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCC-------CeEEEEcchHHhCcCcccccE-EEEc-----
Confidence 3556677777777 899999999999999999954 4222
Q ss_pred eecCCCCcceeeeeeccHhhHHHhcccCCCCCCC
Q 008209 224 VYNPRVRVESLLVSPISKASAHQRSGRAGRTQPG 257 (574)
Q Consensus 224 ~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~G 257 (574)
.|.+...++||.||+||.++|
T Consensus 675 -------------kpl~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 675 -------------KNLRYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp -------------SCCCHHHHHHHHHTTCCCCCT
T ss_pred -------------cCCCccceeehhhccCcCCCC
Confidence 277888999999999999864
No 69
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.51 E-value=1.6e-13 Score=153.41 Aligned_cols=114 Identities=17% Similarity=0.137 Sum_probs=96.5
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccc
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 204 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~ 204 (574)
++.++|||+.....++.+...|.. .++.+..+||+++..+|.++++.|..+.. ....+++||.+++.
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~---------~g~~~~~l~G~~~~~~R~~~i~~F~~~~~----~~~v~L~st~a~g~ 481 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRN---------RRYLYVRLDGTMSIKKRAKIVERFNNPSS----PEFIFMLSSKAGGC 481 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHH---------HTCCEEEECSSCCHHHHHHHHHHHHSTTC----CCCEEEEEGGGSCT
T ss_pred CCCEEEEEEccHHHHHHHHHHHHH---------CCCCEEEEeCCCCHHHHHHHHHHhcCCCC----CcEEEEEecccccC
Confidence 577999999999999999888875 35678999999999999999998877641 11368999999999
Q ss_pred cccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCC---CeEEeeccccccc
Q 008209 205 SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQP---GKCFRLYTEKSFN 269 (574)
Q Consensus 205 gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~---G~~~rl~t~~~~~ 269 (574)
|+|++++++||.++. |-+++.+.||.||++|.|. ..+|++.++...+
T Consensus 482 Glnl~~a~~Vi~~d~------------------~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiE 531 (644)
T 1z3i_X 482 GLNLIGANRLVMFDP------------------DWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIE 531 (644)
T ss_dssp TCCCTTEEEEEECSC------------------CSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHH
T ss_pred CcccccCCEEEEECC------------------CCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHH
Confidence 999999999996665 7788999999999999984 4688888877654
No 70
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.47 E-value=8.1e-14 Score=135.99 Aligned_cols=82 Identities=32% Similarity=0.596 Sum_probs=75.7
Q ss_pred cCCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhhCCCC
Q 008209 7 VLLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAP 86 (574)
Q Consensus 7 ~~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f~~~~ 86 (574)
..++|+|+|+|+|++.+.. .++++++|||||+|+|+++.|+.+..++.+...+++.|+|+||||++.+.|++||+++|
T Consensus 154 ~~~~Ivv~Tpg~l~~~l~~--~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~~p 231 (235)
T 3llm_A 154 PHASIMFCTVGVLLRKLEA--GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFNCP 231 (235)
T ss_dssp SSSEEEEEEHHHHHHHHHH--CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTSCC
T ss_pred CCCeEEEECHHHHHHHHHh--hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCCCC
Confidence 3478999999999999976 48999999999999999999999999999998888999999999999999999999999
Q ss_pred eEEe
Q 008209 87 LMKV 90 (574)
Q Consensus 87 ~i~~ 90 (574)
++.+
T Consensus 232 vi~v 235 (235)
T 3llm_A 232 IIEV 235 (235)
T ss_dssp CEEC
T ss_pred EEeC
Confidence 8864
No 71
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.43 E-value=6.7e-13 Score=152.03 Aligned_cols=116 Identities=14% Similarity=0.122 Sum_probs=97.7
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccccc
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAE 203 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae 203 (574)
..+.++|||+.....++.+...|.. .++.+..+||+++..+|..+++.|..+. .....+|+||.+++
T Consensus 570 ~~g~kvLIFsq~~~~ld~L~~~L~~---------~g~~~~~i~G~~~~~eR~~~i~~F~~~~----~~~~v~LlSt~agg 636 (800)
T 3mwy_W 570 KDGHRVLIFSQMVRMLDILGDYLSI---------KGINFQRLDGTVPSAQRRISIDHFNSPD----SNDFVFLLSTRAGG 636 (800)
T ss_dssp TTTCCEEEEESCHHHHHHHHHHHHH---------HTCCCEEESTTSCHHHHHHHHHTTSSTT----CSCCCEEEEHHHHT
T ss_pred hCCCeEEEEechHHHHHHHHHHHHh---------CCCCEEEEeCCCCHHHHHHHHHHhhCCC----CCceEEEEeccccc
Confidence 3577999999999999999888875 3567889999999999999999998643 11246999999999
Q ss_pred ccccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCC---CCeEEeecccccccc
Q 008209 204 TSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ---PGKCFRLYTEKSFNN 270 (574)
Q Consensus 204 ~gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~---~G~~~rl~t~~~~~~ 270 (574)
.|||++++.+||.++. |-+++...||.||++|.| +..+|+|+++...++
T Consensus 637 ~GlNL~~a~~VI~~D~------------------~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe 688 (800)
T 3mwy_W 637 LGINLMTADTVVIFDS------------------DWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEE 688 (800)
T ss_dssp TTCCCTTCCEEEESSC------------------CSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHH
T ss_pred CCCCccccceEEEecC------------------CCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHH
Confidence 9999999999996554 567789999999999987 567899999877753
No 72
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.25 E-value=3.4e-12 Score=127.09 Aligned_cols=114 Identities=18% Similarity=0.109 Sum_probs=84.4
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccccc
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 204 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae~ 204 (574)
++.++|||+.....++.+...|.+.. ++.+..+||+++..+|..+++.|..+.. .+-+++||+++++
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~--------g~~~~~l~G~~~~~~R~~~i~~F~~~~~-----~~v~L~st~~~g~ 177 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPS-----VKFIVLSVKAGGF 177 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHH--------CSCCCEECTTSCHHHHHHHHHHHHHCTT-----CCEEEEECCTTCC
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhc--------CCcEEEEECCCCHHHHHHHHHHhcCCCC-----CCEEEEehhhhcC
Confidence 57899999999999999999997632 4567889999999999999999987620 1337899999999
Q ss_pred cccCCCeEEEEcCCcccceeecCCCCcceeeeeeccHhhHHHhcccCCCCCC---CeEEeeccccccc
Q 008209 205 SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQP---GKCFRLYTEKSFN 269 (574)
Q Consensus 205 gitip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~~~~~QR~GRaGR~~~---G~~~rl~t~~~~~ 269 (574)
|+|++++++||.++. |-+++.+.||.||++|.|. -.+|+++++...+
T Consensus 178 Glnl~~a~~VI~~d~------------------~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiE 227 (271)
T 1z5z_A 178 GINLTSANRVIHFDR------------------WWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLE 227 (271)
T ss_dssp CCCCTTCSEEEECSC------------------CSCTTTC--------------CCEEEEEEETTSHH
T ss_pred CcCcccCCEEEEECC------------------CCChhHHHHHHHhccccCCCCceEEEEEeeCCCHH
Confidence 999999999997766 6678889999999999883 4578998877664
No 73
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=98.53 E-value=7.6e-08 Score=92.29 Aligned_cols=85 Identities=18% Similarity=0.180 Sum_probs=54.5
Q ss_pred CCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCCH--H-HHHhhhC
Q 008209 9 LGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLEA--E-KFQGYFY 83 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~~--~-~~~~~f~ 83 (574)
.+|+|+|+|.|++.+.... .+.++++||+||+|. ....++. ..+..++. .+++.|+++||||++. . .+..|+.
T Consensus 132 ~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~-~~~~~~~-~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~ 209 (224)
T 1qde_A 132 AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE-MLSSGFK-EQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMR 209 (224)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH-HHHTTCH-HHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCS
T ss_pred CCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhH-HhhhhhH-HHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCC
Confidence 6899999999999887654 588999999999993 2222221 22222322 4568899999999964 3 3455665
Q ss_pred CCCeEEeCCeee
Q 008209 84 GAPLMKVPGRLH 95 (574)
Q Consensus 84 ~~~~i~~~gr~~ 95 (574)
++..+.+++...
T Consensus 210 ~p~~i~~~~~~~ 221 (224)
T 1qde_A 210 NPVRILVKKDEL 221 (224)
T ss_dssp SCEEEC------
T ss_pred CCEEEEecCCcc
Confidence 555555555443
No 74
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.52 E-value=9.9e-08 Score=91.88 Aligned_cols=75 Identities=27% Similarity=0.273 Sum_probs=51.8
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCH--HHHH-hhhC
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA--EKFQ-GYFY 83 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~--~~~~-~~f~ 83 (574)
+.+|+|+|+|+|++.+..+. .+.++++||+||+|. ..+.++.-.+.+.+...+++.|+++||||++. ..+. .|+.
T Consensus 143 ~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~-~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~ 221 (228)
T 3iuy_A 143 GVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADK-MLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLK 221 (228)
T ss_dssp CCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHH-HHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCS
T ss_pred CCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHH-HhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCC
Confidence 46999999999999887765 489999999999993 22222222222222235568999999999963 4444 4443
No 75
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=98.49 E-value=1.2e-07 Score=92.89 Aligned_cols=81 Identities=25% Similarity=0.157 Sum_probs=54.9
Q ss_pred CCCeEEEchHHHHHHHhcCC--CCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCC--HHHHH-hhh
Q 008209 8 LLGGRYLTDGMLLREAMTDP--LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE--AEKFQ-GYF 82 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~--~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~--~~~~~-~~f 82 (574)
+.+|+|+|+|+|++.+...+ .+.++++||+||+| |..+.++.-.+.+.+...+++.++++||||++ ...+. .|+
T Consensus 161 ~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah-~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l 239 (249)
T 3ber_A 161 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD-RILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAAL 239 (249)
T ss_dssp CCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH-HHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHC
T ss_pred CCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh-hhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHC
Confidence 46899999999999987644 58899999999999 33333333332222223456899999999996 34444 455
Q ss_pred CCCCeEE
Q 008209 83 YGAPLMK 89 (574)
Q Consensus 83 ~~~~~i~ 89 (574)
.++..+.
T Consensus 240 ~~p~~i~ 246 (249)
T 3ber_A 240 KNPVKCA 246 (249)
T ss_dssp SSCEEEE
T ss_pred CCCEEEE
Confidence 4433333
No 76
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.47 E-value=1.1e-07 Score=103.91 Aligned_cols=129 Identities=15% Similarity=0.161 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCC
Q 008209 111 EAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGP 190 (574)
Q Consensus 111 ~~~~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~ 190 (574)
......+..+.. ..+|.+|||+||....+.+++.+.+ ..++ .++.. .++..+++.|+.+
T Consensus 370 ~~~~~~l~~~~~-~~~g~~lvff~S~~~~~~v~~~l~~-----------~~~~-~q~~~--~~~~~~l~~f~~~------ 428 (540)
T 2vl7_A 370 PIYSILLKRIYE-NSSKSVLVFFPSYEMLESVRIHLSG-----------IPVI-EENKK--TRHEEVLELMKTG------ 428 (540)
T ss_dssp HHHHHHHHHHHH-TCSSEEEEEESCHHHHHHHHTTCTT-----------SCEE-ESTTT--CCHHHHHHHHHTS------
T ss_pred HHHHHHHHHHHH-hCCCCEEEEeCCHHHHHHHHHHhcc-----------CceE-ecCCC--CcHHHHHHHHhcC------
Confidence 444455555554 4678999999999999988877642 2232 24332 3455566666543
Q ss_pred CCcEEEE--ecccccccccCCC----eEEEEcCCcccceeecCCC----------Cccee--eeeeccHhhHHHhcccCC
Q 008209 191 PGRKIVV--STNIAETSLTIDG----IVYVIDPGFAKQKVYNPRV----------RVESL--LVSPISKASAHQRSGRAG 252 (574)
Q Consensus 191 ~~~kviv--aT~iae~gitip~----v~~VID~g~~k~~~y~~~~----------~~~~l--~~~~is~~~~~QR~GRaG 252 (574)
..|++ +|..+..|||+|| +++||..|+.-...-||.. +.... ...|...-...|-+||+-
T Consensus 429 --~~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~i 506 (540)
T 2vl7_A 429 --KYLVMLVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAF 506 (540)
T ss_dssp --CCEEEEEC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred --CeEEEEEecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcc
Confidence 34666 8999999999998 8999988885433322211 00000 111222567889999999
Q ss_pred CCCC--CeEEee
Q 008209 253 RTQP--GKCFRL 262 (574)
Q Consensus 253 R~~~--G~~~rl 262 (574)
|... |..+.+
T Consensus 507 R~~~D~g~v~ll 518 (540)
T 2vl7_A 507 RDPNDYVKIYLC 518 (540)
T ss_dssp CSTTCCCEEEEE
T ss_pred cCCCccEEEEEE
Confidence 9764 665544
No 77
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.45 E-value=1.5e-07 Score=92.93 Aligned_cols=77 Identities=23% Similarity=0.286 Sum_probs=53.1
Q ss_pred CCCeEEEchHHHHHHHhcCC--CCCCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCC--HHHHHh-h
Q 008209 8 LLGGRYLTDGMLLREAMTDP--LLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLE--AEKFQG-Y 81 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~--~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~--~~~~~~-~ 81 (574)
+.+|+|+|||.|++.+...+ .+.++++|||||+|. ..+.++. ..++.++. .+++.|+|+||||++ .+.+.+ +
T Consensus 176 ~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~-l~~~~~~-~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~ 253 (262)
T 3ly5_A 176 GINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADR-ILDVGFE-EELKQIIKLLPTRRQTMLFSATQTRKVEDLARIS 253 (262)
T ss_dssp CCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHH-HHHTTCH-HHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHH
T ss_pred CCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHH-HhhhhHH-HHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHH
Confidence 36899999999999997765 589999999999993 2222222 22233333 446789999999995 455554 4
Q ss_pred hCCCC
Q 008209 82 FYGAP 86 (574)
Q Consensus 82 f~~~~ 86 (574)
+.+.+
T Consensus 254 l~~~~ 258 (262)
T 3ly5_A 254 LKKEP 258 (262)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 44333
No 78
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.45 E-value=1.6e-07 Score=91.30 Aligned_cols=82 Identities=21% Similarity=0.223 Sum_probs=55.5
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCC--HHHHH-hhh
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLE--AEKFQ-GYF 82 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~--~~~~~-~~f 82 (574)
+.+|+|+|||+|++.+.... .+.++++||+||+|. -.+.++. ..+..++. .+++.|+++||||++ .+.+. .|+
T Consensus 152 ~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-l~~~~~~-~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l 229 (242)
T 3fe2_A 152 GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADR-MLDMGFE-PQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL 229 (242)
T ss_dssp CCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHH-HHHTTCH-HHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHC
T ss_pred CCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHH-HhhhCcH-HHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHC
Confidence 36899999999999997665 589999999999993 2222222 22233333 456899999999996 44554 455
Q ss_pred CCCCeEEeC
Q 008209 83 YGAPLMKVP 91 (574)
Q Consensus 83 ~~~~~i~~~ 91 (574)
.++-.|.+.
T Consensus 230 ~~~~~i~~~ 238 (242)
T 3fe2_A 230 KDYIHINIG 238 (242)
T ss_dssp SSCEEEEEC
T ss_pred CCCEEEEec
Confidence 443334443
No 79
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=98.44 E-value=2e-07 Score=90.21 Aligned_cols=83 Identities=18% Similarity=0.153 Sum_probs=55.7
Q ss_pred CCCeEEEchHHHHHHHhcC--CCCCCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCC--HHHHHh-h
Q 008209 8 LLGGRYLTDGMLLREAMTD--PLLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLE--AEKFQG-Y 81 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~--~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~--~~~~~~-~ 81 (574)
+.+|+|+|+|.|++.+... ..+.++++||+||+|. ..+.++. ..+..++. .+++.++++||||++ ...+.+ |
T Consensus 146 ~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~-~~~~~~~-~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 223 (236)
T 2pl3_A 146 NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADR-ILDMGFA-DTMNAVIENLPKKRQTLLFSATQTKSVKDLARLS 223 (236)
T ss_dssp TCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHH-HHHTTTH-HHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHS
T ss_pred CCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHH-HhcCCcH-HHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHh
Confidence 4689999999999998765 3578999999999992 2222222 22233333 445789999999996 445554 4
Q ss_pred hCCCCeEEeCC
Q 008209 82 FYGAPLMKVPG 92 (574)
Q Consensus 82 f~~~~~i~~~g 92 (574)
+.++..+.+++
T Consensus 224 ~~~p~~i~~~~ 234 (236)
T 2pl3_A 224 LKNPEYVWVHE 234 (236)
T ss_dssp CSSCEEEECCC
T ss_pred CCCCEEEEeCC
Confidence 44444555544
No 80
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.42 E-value=5.1e-07 Score=87.80 Aligned_cols=85 Identities=18% Similarity=0.142 Sum_probs=55.3
Q ss_pred CCCeEEEchHHHHHHHhcCC---CCCCccEEEEecCCCCCcc--hHHHHHHHHHHHh--hCCCccEEEEccCCC--HHHH
Q 008209 8 LLGGRYLTDGMLLREAMTDP---LLERYKVIVLDEAHERTLA--TDVLFGLLKEVLK--NRPDLKLVVMSATLE--AEKF 78 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~---~L~~~~~vIiDE~HeR~~~--~d~ll~~lk~~~~--~~~~~klvlmSATl~--~~~~ 78 (574)
+.+|+|+|||+|++.+..++ .+.++++||+||+|.-.-. .++.-. +..++. ..++.|+++||||++ .+.+
T Consensus 149 ~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~SAT~~~~v~~~ 227 (245)
T 3dkp_A 149 KFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQ-LASIFLACTSHKVRRAMFSATFAYDVEQW 227 (245)
T ss_dssp CCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHH-HHHHHHHCCCTTCEEEEEESSCCHHHHHH
T ss_pred CCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHH-HHHHHHhcCCCCcEEEEEeccCCHHHHHH
Confidence 46899999999999998763 5889999999999941100 122222 222222 235789999999995 4455
Q ss_pred Hh-hhCCCCeEEeCCe
Q 008209 79 QG-YFYGAPLMKVPGR 93 (574)
Q Consensus 79 ~~-~f~~~~~i~~~gr 93 (574)
.+ ++.++..+.+.++
T Consensus 228 ~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 228 CKLNLDNVISVSIGAR 243 (245)
T ss_dssp HHHHSSSCEEEEECC-
T ss_pred HHHhCCCCEEEEeCCC
Confidence 44 5544444555443
No 81
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=98.39 E-value=3.1e-07 Score=87.83 Aligned_cols=76 Identities=18% Similarity=0.171 Sum_probs=51.8
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCC--HHH-HHhhh
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLE--AEK-FQGYF 82 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~--~~~-~~~~f 82 (574)
+.+|+|+|+|.|.+.+.... .+.++++||+||+|. -...++ ...+..++. .+++.|+++||||++ ... +..|+
T Consensus 126 ~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-~~~~~~-~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~ 203 (219)
T 1q0u_A 126 QPHIVIGTPGRINDFIREQALDVHTAHILVVDEADL-MLDMGF-ITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYM 203 (219)
T ss_dssp CCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHH-HHHTTC-HHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHC
T ss_pred CCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchH-HhhhCh-HHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHc
Confidence 46899999999999887654 478999999999994 111111 222333333 345789999999995 333 44555
Q ss_pred CCC
Q 008209 83 YGA 85 (574)
Q Consensus 83 ~~~ 85 (574)
.++
T Consensus 204 ~~p 206 (219)
T 1q0u_A 204 ENP 206 (219)
T ss_dssp SSC
T ss_pred CCC
Confidence 443
No 82
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=98.39 E-value=3.8e-07 Score=86.13 Aligned_cols=78 Identities=27% Similarity=0.291 Sum_probs=52.5
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCC--HHHHHhhhC
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLE--AEKFQGYFY 83 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~--~~~~~~~f~ 83 (574)
+.+|+|+|+|.|++.+.... .+.++++||+||+|. ..+.++ ...+..++. .+++.|+++||||++ .+.+.+.+.
T Consensus 120 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~-~~~~~~-~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 197 (207)
T 2gxq_A 120 GADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADE-MLSMGF-EEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYM 197 (207)
T ss_dssp CCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHH-HHHTTC-HHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHC
T ss_pred CCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhH-hhccch-HHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHc
Confidence 46899999999999887644 589999999999993 111111 122233333 445889999999996 445554433
Q ss_pred CCCe
Q 008209 84 GAPL 87 (574)
Q Consensus 84 ~~~~ 87 (574)
+.|+
T Consensus 198 ~~p~ 201 (207)
T 2gxq_A 198 KNPV 201 (207)
T ss_dssp SSCE
T ss_pred CCCe
Confidence 3343
No 83
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=98.38 E-value=4.7e-07 Score=85.46 Aligned_cols=74 Identities=22% Similarity=0.312 Sum_probs=51.6
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCCH--HHH-Hhhh
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLEA--EKF-QGYF 82 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~~--~~~-~~~f 82 (574)
+.+|+|+|+|.|.+.+.... .+.++++||+||+|. ....++ ...++.++. .+++.++++||||++. ..+ ..|+
T Consensus 122 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~-~~~~~~-~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l 199 (206)
T 1vec_A 122 TVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK-LLSQDF-VQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHL 199 (206)
T ss_dssp CCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH-HTSTTT-HHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHC
T ss_pred CCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH-hHhhCc-HHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHc
Confidence 46899999999999887665 588999999999994 122222 233333333 3448999999999953 343 4455
Q ss_pred C
Q 008209 83 Y 83 (574)
Q Consensus 83 ~ 83 (574)
.
T Consensus 200 ~ 200 (206)
T 1vec_A 200 E 200 (206)
T ss_dssp S
T ss_pred C
Confidence 3
No 84
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=98.38 E-value=3.4e-07 Score=88.78 Aligned_cols=72 Identities=22% Similarity=0.267 Sum_probs=50.4
Q ss_pred CCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCC---CCcchHHHHHHHHHHHhhCCCccEEEEccCCC--HHHHH-hh
Q 008209 9 LGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHE---RTLATDVLFGLLKEVLKNRPDLKLVVMSATLE--AEKFQ-GY 81 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~He---R~~~~d~ll~~lk~~~~~~~~~klvlmSATl~--~~~~~-~~ 81 (574)
.+|+|+|||.|++.+.... .+.++++||+||+|. .+. .+.+..+++ ..+++.|+|+||||++ ...+. .|
T Consensus 150 ~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~-~~~l~~i~~---~~~~~~~~i~~SAT~~~~~~~~~~~~ 225 (237)
T 3bor_A 150 PHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGF-KDQIYEIFQ---KLNTSIQVVLLSATMPTDVLEVTKKF 225 (237)
T ss_dssp CSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTC-HHHHHHHHH---HSCTTCEEEEECSSCCHHHHHHHHHH
T ss_pred CCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCc-HHHHHHHHH---hCCCCCeEEEEEEecCHHHHHHHHHH
Confidence 6899999999999987654 488999999999993 221 122222222 2456899999999996 34444 45
Q ss_pred hCC
Q 008209 82 FYG 84 (574)
Q Consensus 82 f~~ 84 (574)
+.+
T Consensus 226 l~~ 228 (237)
T 3bor_A 226 MRD 228 (237)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 85
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=98.35 E-value=6.4e-07 Score=86.39 Aligned_cols=74 Identities=14% Similarity=0.080 Sum_probs=51.4
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCC---CCcchHHHHHHHHHHHh-hCCCccEEEEccCCCHH---HHH
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHE---RTLATDVLFGLLKEVLK-NRPDLKLVVMSATLEAE---KFQ 79 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~He---R~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~~~---~~~ 79 (574)
+.+|+|+|+|.|++.+..+. .+.++++||+||+|. .+...+. ++.++. .+++.|+++||||++.+ .+.
T Consensus 142 ~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~----~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~ 217 (230)
T 2oxc_A 142 KCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQ----INWIYSSLPASKQMLAVSATYPEFLANALT 217 (230)
T ss_dssp SCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHH----HHHHHHHSCSSCEEEEEESCCCHHHHHHHT
T ss_pred CCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHH----HHHHHHhCCCCCeEEEEEeccCHHHHHHHH
Confidence 46899999999999887654 478999999999993 3322222 223333 34478999999999643 344
Q ss_pred hhhCCC
Q 008209 80 GYFYGA 85 (574)
Q Consensus 80 ~~f~~~ 85 (574)
+|++++
T Consensus 218 ~~~~~p 223 (230)
T 2oxc_A 218 KYMRDP 223 (230)
T ss_dssp TTCSSC
T ss_pred HHcCCC
Confidence 566543
No 86
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.34 E-value=3.5e-07 Score=92.15 Aligned_cols=82 Identities=23% Similarity=0.140 Sum_probs=55.0
Q ss_pred CCCeEEEchHHHHHHHhcCC--CCCCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCC--HHHHHh-h
Q 008209 8 LLGGRYLTDGMLLREAMTDP--LLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLE--AEKFQG-Y 81 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~--~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~--~~~~~~-~ 81 (574)
..+|+|+|||+|++.+.+.+ .+.++++|||||+|. ..+.......+..+.. .+++.|+|+||||++ ...+++ |
T Consensus 210 ~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~-l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~ 288 (300)
T 3fmo_B 210 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV-MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKV 288 (300)
T ss_dssp CCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHH-HHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHH
T ss_pred CCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHH-HhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHH
Confidence 35899999999999997644 478999999999994 2221122233333333 456799999999995 455555 4
Q ss_pred hCCCCeEEe
Q 008209 82 FYGAPLMKV 90 (574)
Q Consensus 82 f~~~~~i~~ 90 (574)
+.++.+|.+
T Consensus 289 l~~p~~i~~ 297 (300)
T 3fmo_B 289 VPDPNVIKL 297 (300)
T ss_dssp SSSCEEEEE
T ss_pred CCCCeEEEe
Confidence 444334443
No 87
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=98.32 E-value=9.8e-07 Score=84.24 Aligned_cols=76 Identities=20% Similarity=0.192 Sum_probs=52.8
Q ss_pred CCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCCC--HHHHH-hhhC
Q 008209 9 LGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLE--AEKFQ-GYFY 83 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl~--~~~~~-~~f~ 83 (574)
.+|+|+|+|.|++.+.... .+.++++||+||+|.-.-..++ ...++.++. ..++.|+++||||++ .+.+. .|+.
T Consensus 135 ~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~-~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~ 213 (220)
T 1t6n_A 135 PHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDM-RRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQ 213 (220)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHH-HHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCS
T ss_pred CCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCc-HHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcC
Confidence 5899999999999887765 5899999999999942111222 233344444 345789999999994 44554 4554
Q ss_pred CC
Q 008209 84 GA 85 (574)
Q Consensus 84 ~~ 85 (574)
++
T Consensus 214 ~p 215 (220)
T 1t6n_A 214 DP 215 (220)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 88
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=98.15 E-value=2.3e-06 Score=83.61 Aligned_cols=81 Identities=25% Similarity=0.269 Sum_probs=52.7
Q ss_pred CCCeEEEchHHHHHHHhcCC-CCCCccEEEEecCCCCCcchHHHHHHHHHHHh---hCC--CccEEEEccCCC--HHHHH
Q 008209 8 LLGGRYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLK---NRP--DLKLVVMSATLE--AEKFQ 79 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~-~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~---~~~--~~klvlmSATl~--~~~~~ 79 (574)
+.+|+|+|+|+|++.+.... .+.++++||+||+|. ..+..+ -..++.++. ... +.|+++||||++ .+.+.
T Consensus 150 ~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-~~~~~~-~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~ 227 (253)
T 1wrb_A 150 GCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADR-MLDMGF-EPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLA 227 (253)
T ss_dssp CCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHH-HHHTTC-HHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHH
T ss_pred CCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHH-HHhCch-HHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHH
Confidence 46899999999999987765 589999999999994 111111 122233333 122 678999999995 34554
Q ss_pred h-hhCCCCeEEe
Q 008209 80 G-YFYGAPLMKV 90 (574)
Q Consensus 80 ~-~f~~~~~i~~ 90 (574)
+ |+.+...+.+
T Consensus 228 ~~~l~~~~~i~~ 239 (253)
T 1wrb_A 228 ADFLYNYIFMTV 239 (253)
T ss_dssp HHHCSSCEEEEE
T ss_pred HHHcCCCEEEEE
Confidence 4 5543333433
No 89
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.07 E-value=2.9e-06 Score=80.30 Aligned_cols=64 Identities=20% Similarity=0.274 Sum_probs=42.0
Q ss_pred CCeEEEchHHHHHHHhcC-------CCCCCccEEEEecCCCCC---cchHHHHHHHHHHHh-h---------CCCccEEE
Q 008209 9 LGGRYLTDGMLLREAMTD-------PLLERYKVIVLDEAHERT---LATDVLFGLLKEVLK-N---------RPDLKLVV 68 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~l~~~-------~~L~~~~~vIiDE~HeR~---~~~d~ll~~lk~~~~-~---------~~~~klvl 68 (574)
.+|+|+|++.|.+.+... ..+.++++|||||+|.-. ...+++-.++...+. . .++.++|+
T Consensus 133 ~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 212 (216)
T 3b6e_A 133 CDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILG 212 (216)
T ss_dssp CSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEE
T ss_pred CCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHHHHHhcccccccccccCCCCcceEEE
Confidence 689999999999988764 347899999999999531 222222222222221 1 16899999
Q ss_pred EccC
Q 008209 69 MSAT 72 (574)
Q Consensus 69 mSAT 72 (574)
||||
T Consensus 213 lSAT 216 (216)
T 3b6e_A 213 LTAS 216 (216)
T ss_dssp EECC
T ss_pred eecC
Confidence 9999
No 90
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=97.87 E-value=0.00011 Score=82.49 Aligned_cols=77 Identities=22% Similarity=0.349 Sum_probs=56.2
Q ss_pred cEEEEccCCC--HHHHHhhhCCCCeEEeCCeeece------eEEeecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCH
Q 008209 65 KLVVMSATLE--AEKFQGYFYGAPLMKVPGRLHPV------EIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGE 136 (574)
Q Consensus 65 klvlmSATl~--~~~~~~~f~~~~~i~~~gr~~~v------~~~y~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~ 136 (574)
|+-+||.|.. .+.|.+.+ +..++.+|.- .|+ +..| ......+.+.+..+...|. .+-+|||++.|.
T Consensus 380 kLsGMTGTA~tE~~Ef~~iY-~l~Vv~IPTn-~p~~R~D~~d~vy--~t~~~K~~AIv~eI~~~~~--~GqPVLVgT~SI 453 (997)
T 2ipc_A 380 KRAGMTGTAKTEEKEFQEIY-GMDVVVVPTN-RPVIRKDFPDVVY--RTEKGKFYAVVEEIAEKYE--RGQPVLVGTISI 453 (997)
T ss_dssp EEEEEESSCGGGHHHHHHHH-CCCEEECCCS-SCCCCEEEEEEEE--SSHHHHHHHHHHHHHHHHH--HTCCEEEECSSH
T ss_pred HheecCCCchHHHHHHHHHh-CCCEEEcCCC-CCcccccCCCeEE--cCHHHHHHHHHHHHHHHHH--CCCCEEEEeCCH
Confidence 7999999994 56677666 4667777752 232 2233 2345666777777877774 478999999999
Q ss_pred HHHHHHHHHHH
Q 008209 137 EEIEDACRKIT 147 (574)
Q Consensus 137 ~ei~~~~~~L~ 147 (574)
++.+.+.+.|.
T Consensus 454 e~SE~LS~~L~ 464 (997)
T 2ipc_A 454 EKSERLSQMLK 464 (997)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999998
No 91
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=97.25 E-value=0.00012 Score=72.66 Aligned_cols=59 Identities=12% Similarity=0.074 Sum_probs=42.2
Q ss_pred cCCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHh-hCCCccEEEEccCC
Q 008209 7 VLLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATL 73 (574)
Q Consensus 7 ~~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~-~~~~~klvlmSATl 73 (574)
...+|+++|++.+.+.. ...+.++++||+||+|.-. .+ .+..++. ..+..++++||||+
T Consensus 203 ~~~~I~v~T~~~l~~~~--~~~~~~~~~vIiDEaH~~~--~~----~~~~il~~~~~~~~~l~lSATp 262 (282)
T 1rif_A 203 NDAPVVVGTWQTVVKQP--KEWFSQFGMMMNDECHLAT--GK----SISSIISGLNNCMFKFGLSGSL 262 (282)
T ss_dssp TTCSEEEECHHHHTTSC--GGGGGGEEEEEEETGGGCC--HH----HHHHHTTTCTTCCEEEEECSSC
T ss_pred cCCcEEEEchHHHHhhH--HHHHhhCCEEEEECCccCC--cc----cHHHHHHHhhcCCeEEEEeCCC
Confidence 45789999999876542 1357899999999999522 22 2233333 33578999999999
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.67 E-value=0.002 Score=62.03 Aligned_cols=59 Identities=20% Similarity=0.161 Sum_probs=41.6
Q ss_pred CCCeEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCC
Q 008209 8 LLGGRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 74 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~ 74 (574)
..+|+++|++.+.+.+.. ...++++|||||+|.-. . +. .+.++...+..++++||||+.
T Consensus 171 ~~~i~v~T~~~l~~~~~~--~~~~~~llIiDEaH~l~-~-~~----~~~i~~~~~~~~~l~LSATp~ 229 (237)
T 2fz4_A 171 LKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVHHLP-A-ES----YVQIAQMSIAPFRLGLTATFE 229 (237)
T ss_dssp CCSEEEEEHHHHHHTHHH--HTTTCSEEEEECSSCCC-T-TT----HHHHHHTCCCSEEEEEEESCC
T ss_pred cCCEEEEeHHHHHhhHHH--hcccCCEEEEECCccCC-C-hH----HHHHHHhccCCEEEEEecCCC
Confidence 468999999999876642 23569999999999522 1 11 223334445788999999984
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=96.18 E-value=0.01 Score=65.53 Aligned_cols=174 Identities=16% Similarity=0.229 Sum_probs=92.0
Q ss_pred cEEEEccCCC-HHHHHhhhCCC-CeEEeCCeeec---eeEEeecC-------CchhHHHHHHHHHHHHHhcCCCCCEEEE
Q 008209 65 KLVVMSATLE-AEKFQGYFYGA-PLMKVPGRLHP---VEIFYTQE-------PERDYLEAAIRTVVQIHMCEPSGDILVF 132 (574)
Q Consensus 65 klvlmSATl~-~~~~~~~f~~~-~~i~~~gr~~~---v~~~y~~~-------~~~~~~~~~~~~~~~i~~~~~~g~iLVF 132 (574)
.+|++||||. .+.|.+-++-. ..+.++ .+|+ ..+.+.+. ....+.......+..+.. ..+|.+|||
T Consensus 377 ~~il~SaTL~p~~~~~~~lGl~~~~~~~~-spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~-~~~g~~lvl 454 (620)
T 4a15_A 377 KTIHMSGTLDPFDFYSDITGFEIPFKKIG-EIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIIL-KVKKNTIVY 454 (620)
T ss_dssp EEEEEESSCCSHHHHHHHHCCCCCEEECC-CCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHH-HHCSCEEEE
T ss_pred eEEEEccCCCcHHHHHHHhCCCceeeecC-CCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHH-hCCCCEEEE
Confidence 4689999995 56666655421 222222 1222 12222211 122334445555555554 247789999
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc--cccccccCCC
Q 008209 133 LTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN--IAETSLTIDG 210 (574)
Q Consensus 133 l~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~--iae~gitip~ 210 (574)
+||....+.+++.+.. .+.. ...+++..++..+++.|. +. .-|+++|. ...-|||+||
T Consensus 455 F~Sy~~l~~v~~~l~~---------~~~~---~~q~~~~~~~~~ll~~f~-~~-------~~vL~~v~~gsf~EGiD~~g 514 (620)
T 4a15_A 455 FPSYSLMDRVENRVSF---------EHMK---EYRGIDQKELYSMLKKFR-RD-------HGTIFAVSGGRLSEGINFPG 514 (620)
T ss_dssp ESCHHHHHHHTSSCCS---------CCEE---CCTTCCSHHHHHHHHHHT-TS-------CCEEEEETTSCC--------
T ss_pred eCCHHHHHHHHHHHHh---------cchh---ccCCCChhHHHHHHHHhc-cC-------CcEEEEEecCceeccccCCC
Confidence 9999988888777641 1222 445555556777777776 54 67999974 8888999997
Q ss_pred e--EEEEcCCcccceeecCC-------------CCcceeeeeeccHhhHHHhcccCCCCCC--CeEEee
Q 008209 211 I--VYVIDPGFAKQKVYNPR-------------VRVESLLVSPISKASAHQRSGRAGRTQP--GKCFRL 262 (574)
Q Consensus 211 v--~~VID~g~~k~~~y~~~-------------~~~~~l~~~~is~~~~~QR~GRaGR~~~--G~~~rl 262 (574)
- +.||=.|+.-... ||. .+...-...| ..-...|=+||+=|... |..+-+
T Consensus 515 ~~l~~viI~~lPfp~~-~p~~~ar~~~~~~~~g~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~ll 581 (620)
T 4a15_A 515 NELEMIILAGLPFPRP-DAINRSLFDYYERKYGKGWEYSVVYP-TAIKIRQEIGRLIRSAEDTGACVIL 581 (620)
T ss_dssp CCCCEEEESSCCCCCC-CHHHHHHHHHHHHHHSCHHHHHTHHH-HHHHHHHHHHTTCCSTTCCEEEEEE
T ss_pred CceEEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCCchHHhHHH-HHHHHHHHhCccccCCCceEEEEEE
Confidence 3 4666566532211 110 0100001123 34567899999999774 665554
No 94
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=96.07 E-value=0.059 Score=58.46 Aligned_cols=173 Identities=13% Similarity=0.137 Sum_probs=100.7
Q ss_pred ccEEEEccCCC-HHHHHhhhCCC-CeE------EeCCeeece-eEEeecC----C----chhHHHHHHHHHHHHHhcCCC
Q 008209 64 LKLVVMSATLE-AEKFQGYFYGA-PLM------KVPGRLHPV-EIFYTQE----P----ERDYLEAAIRTVVQIHMCEPS 126 (574)
Q Consensus 64 ~klvlmSATl~-~~~~~~~f~~~-~~i------~~~gr~~~v-~~~y~~~----~----~~~~~~~~~~~~~~i~~~~~~ 126 (574)
..+|+||||+. .+.|.+-++-. +.. .++ .+|+- ...|.+. + ..++.......+..+.. ..+
T Consensus 316 ~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~-spf~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~-~~~ 393 (551)
T 3crv_A 316 LSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQ-KRVSGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYF-QAK 393 (551)
T ss_dssp CEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTT-SCCSCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHH-HCS
T ss_pred ceEEEEeeCCCcHHHHHHHhCCCCccccccceeecC-CcCCCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHH-hCC
Confidence 57999999995 45566655432 221 111 11110 0122221 1 13445555666666655 357
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEec--ccccc
Q 008209 127 GDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVST--NIAET 204 (574)
Q Consensus 127 g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT--~iae~ 204 (574)
|.+|||+||....+.+++. .+..++.-..+++..+..+.|+ ... .-|+++| ....-
T Consensus 394 g~~lvlF~Sy~~l~~v~~~------------~~~~v~~q~~~~~~~~~~~~~~---~~~-------~~vl~~v~gg~~~E 451 (551)
T 3crv_A 394 ANVLVVFPSYEIMDRVMSR------------ISLPKYVESEDSSVEDLYSAIS---ANN-------KVLIGSVGKGKLAE 451 (551)
T ss_dssp SEEEEEESCHHHHHHHHTT------------CCSSEEECCSSCCHHHHHHHTT---SSS-------SCEEEEESSCCSCC
T ss_pred CCEEEEecCHHHHHHHHHh------------cCCcEEEcCCCCCHHHHHHHHH---hcC-------CeEEEEEecceecc
Confidence 8999999999988888751 1234544444556666655554 222 4699998 57888
Q ss_pred cccCC---C--eEEEEcCCcccceeecC-----------CCCccee---eeeeccHhhHHHhcccCCCCCC--CeEEee
Q 008209 205 SLTID---G--IVYVIDPGFAKQKVYNP-----------RVRVESL---LVSPISKASAHQRSGRAGRTQP--GKCFRL 262 (574)
Q Consensus 205 gitip---~--v~~VID~g~~k~~~y~~-----------~~~~~~l---~~~~is~~~~~QR~GRaGR~~~--G~~~rl 262 (574)
|||+| | .+.||=.|+.-... || ..|.+.. ...| ..-...|=+||+=|... |..+-+
T Consensus 452 GiD~~d~~g~~l~~viI~~lPfp~~-dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~ll 528 (551)
T 3crv_A 452 GIELRNNDRSLISDVVIVGIPYPPP-DDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIRDVNDKCNVWLL 528 (551)
T ss_dssp SSCCEETTEESEEEEEEESCCCCCC-SHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCCSTTCEEEEEEE
T ss_pred cccccccCCcceeEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCccCCCccEEEEEe
Confidence 99999 3 67777666644333 33 2122111 2334 55667899999999874 555544
No 95
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=92.46 E-value=0.58 Score=46.71 Aligned_cols=120 Identities=10% Similarity=0.031 Sum_probs=67.4
Q ss_pred HHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCc
Q 008209 114 IRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGR 193 (574)
Q Consensus 114 ~~~~~~i~~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~ 193 (574)
+..++.... +.+.+||||....+..+-+...|.. .++....+-|+....++ +. .... .
T Consensus 114 L~~LL~~l~-~~~~kVLIfsq~t~~LDilE~~l~~---------~~~~y~RlDG~~~~~~~-k~----~~~~-------~ 171 (328)
T 3hgt_A 114 LRDLINLVQ-EYETETAIVCRPGRTMDLLEALLLG---------NKVHIKRYDGHSIKSAA-AA----NDFS-------C 171 (328)
T ss_dssp HHHHHHHHT-TSCEEEEEEECSTHHHHHHHHHHTT---------SSCEEEESSSCCC------------CCS-------E
T ss_pred HHHHHHHHH-hCCCEEEEEECChhHHHHHHHHHhc---------CCCceEeCCCCchhhhh-hc----ccCC-------c
Confidence 344444443 4577999999998888877777753 57888999988544332 21 1122 5
Q ss_pred EEEEeccccccccc-----CCCeEEEEcCCcccceeecCCCCcceeeeeeccH-hhHHHhcccC--CCCCCCeEEeeccc
Q 008209 194 KIVVSTNIAETSLT-----IDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISK-ASAHQRSGRA--GRTQPGKCFRLYTE 265 (574)
Q Consensus 194 kvivaT~iae~git-----ip~v~~VID~g~~k~~~y~~~~~~~~l~~~~is~-~~~~QR~GRa--GR~~~G~~~rl~t~ 265 (574)
.|.+.|....-|++ .-+.+.|| .||+... |-+. -+++.|+-|. |...+-.+|||.+.
T Consensus 172 ~i~Lltsag~~gin~~~~nl~~aD~VI--------~~DsdwN-------p~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~ 236 (328)
T 3hgt_A 172 TVHLFSSEGINFTKYPIKSKARFDMLI--------CLDTTVD-------TSQKDIQYLLQYKRERKGLERYAPIVRLVAI 236 (328)
T ss_dssp EEEEEESSCCCTTTSCCCCCSCCSEEE--------ECSTTCC-------TTSHHHHHHHCCC---------CCEEEEEET
T ss_pred eEEEEECCCCCCcCcccccCCCCCEEE--------EECCCCC-------CCChHHHHHHHHhhhccCCCCcceEEEEeCC
Confidence 67777765444564 34555666 4555533 2222 2344455555 33446789999998
Q ss_pred ccccc
Q 008209 266 KSFNN 270 (574)
Q Consensus 266 ~~~~~ 270 (574)
...|+
T Consensus 237 ~TiEh 241 (328)
T 3hgt_A 237 NSIDH 241 (328)
T ss_dssp TSHHH
T ss_pred CCHHH
Confidence 77754
No 96
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=82.64 E-value=0.56 Score=50.67 Aligned_cols=35 Identities=26% Similarity=0.176 Sum_probs=28.5
Q ss_pred CCCeEEEchHHHHHHHhcCC--CCCCccEEEEecCCC
Q 008209 8 LLGGRYLTDGMLLREAMTDP--LLERYKVIVLDEAHE 42 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~--~L~~~~~vIiDE~He 42 (574)
..+|+|+|+++|+..+..+. ...+..+|||||||.
T Consensus 148 ~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHn 184 (551)
T 3crv_A 148 KADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHN 184 (551)
T ss_dssp GCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGG
T ss_pred cCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccc
Confidence 57999999999999875543 235788999999993
No 97
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=81.89 E-value=0.71 Score=52.11 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=27.8
Q ss_pred CCCeEEEchHHH-HHHHhcC-------CCCC---CccEEEEecCC
Q 008209 8 LLGGRYLTDGML-LREAMTD-------PLLE---RYKVIVLDEAH 41 (574)
Q Consensus 8 ~~~I~~~T~g~L-l~~l~~~-------~~L~---~~~~vIiDE~H 41 (574)
+.+|+|+|+|.| ++.|..+ ..++ ++.++||||+|
T Consensus 168 ~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaD 212 (997)
T 2ipc_A 168 LADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVD 212 (997)
T ss_dssp TSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHH
T ss_pred CCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechH
Confidence 358999999999 6766543 2477 89999999999
No 98
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=81.54 E-value=13 Score=36.82 Aligned_cols=36 Identities=17% Similarity=0.108 Sum_probs=28.1
Q ss_pred CCccCCCC--cChhhhhhccCCCCHHHHHHHHhccCCC
Q 008209 325 GALDDDGN--LTEMGEKMSEFPLDPQMSKMLVESPKYN 360 (574)
Q Consensus 325 gald~~~~--lT~lG~~~~~lpl~p~~~~~ll~~~~~~ 360 (574)
|+++++|. .|++|+++|.+++++..++.+.....-.
T Consensus 1 ~~~~~~~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~ 38 (328)
T 3im1_A 1 GAMEATEIISTLSNGLIASHYGVSFFTIQSFVSSLSNT 38 (328)
T ss_dssp ---CCCCCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTT
T ss_pred CCccCCCCccCCchhHHHHHHCCCHHHHHHHHHHhccc
Confidence 67777664 6899999999999999999999776544
No 99
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=79.80 E-value=2.1 Score=48.20 Aligned_cols=79 Identities=13% Similarity=0.135 Sum_probs=62.1
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccc-c
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIA-E 203 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ia-e 203 (574)
.+++++|.+|++.=+...++.+.+.+.. .++.+..+||+.+..++..+++....|. ..|+|+|.-. .
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~-----~gi~v~~l~G~~~~~~r~~~~~~l~~g~-------~~IvVgT~~ll~ 483 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSK-----FNIHVALLIGATTPSEKEKIKSGLRNGQ-------IDVVIGTHALIQ 483 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTC-----SSCCEEECCSSSCHHHHHHHHHHHHSSC-------CCEEEECTTHHH
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhh-----cCceEEEEeCCCCHHHHHHHHHHHhcCC-------CCEEEECHHHHh
Confidence 3679999999999999888888876532 3578999999999999888877777766 7899999632 2
Q ss_pred ccccCCCeEEEE
Q 008209 204 TSLTIDGIVYVI 215 (574)
Q Consensus 204 ~gitip~v~~VI 215 (574)
..+...++.+||
T Consensus 484 ~~~~~~~l~lVV 495 (780)
T 1gm5_A 484 EDVHFKNLGLVI 495 (780)
T ss_dssp HCCCCSCCCEEE
T ss_pred hhhhccCCceEE
Confidence 346777777766
No 100
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=78.96 E-value=4 Score=38.41 Aligned_cols=75 Identities=16% Similarity=0.173 Sum_probs=54.1
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc----
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN---- 200 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~---- 200 (574)
.++.+||.+|+++-+..+.+.+.+.... .++.+..++|+.+..++...+... ..|+|+|+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~-----------~~I~v~Tp~~l~ 164 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRA-----CRLKSTCIYGGAPKGPQIRDLERG-----------VEICIATPGRLI 164 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHH-----TTCCEEEECTTSCHHHHHHHHHHC-----------CSEEEECHHHHH
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhh-----cCceEEEEECCCChHHHHHHhcCC-----------CCEEEECHHHHH
Confidence 4667999999999999888888765443 356788899999988776655432 47999995
Q ss_pred -ccc-ccccCCCeEEEE
Q 008209 201 -IAE-TSLTIDGIVYVI 215 (574)
Q Consensus 201 -iae-~gitip~v~~VI 215 (574)
... ..+++.++.+||
T Consensus 165 ~~l~~~~~~~~~~~~lV 181 (242)
T 3fe2_A 165 DFLECGKTNLRRTTYLV 181 (242)
T ss_dssp HHHHHTSCCCTTCCEEE
T ss_pred HHHHcCCCCcccccEEE
Confidence 222 234677777665
No 101
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=78.22 E-value=14 Score=33.21 Aligned_cols=77 Identities=10% Similarity=0.097 Sum_probs=51.7
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccc--
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNI-- 201 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~i-- 201 (574)
..+..+||.+|+++-++..++.+.+.... .++..+..++|+.+..++...+.. . ..|+|+|+-
T Consensus 69 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~----~-------~~i~v~T~~~l 133 (206)
T 1vec_A 69 KDNIQAMVIVPTRELALQVSQICIQVSKH----MGGAKVMATTGGTNLRDDIMRLDD----T-------VHVVIATPGRI 133 (206)
T ss_dssp SCSCCEEEECSCHHHHHHHHHHHHHHTTT----SSSCCEEEECSSSCHHHHHHHTTS----C-------CSEEEECHHHH
T ss_pred CCCeeEEEEeCcHHHHHHHHHHHHHHHhh----cCCceEEEEeCCccHHHHHHhcCC----C-------CCEEEeCHHHH
Confidence 34568999999999888888888764322 235778889999887765544321 1 579999961
Q ss_pred ---cc-ccccCCCeEEEE
Q 008209 202 ---AE-TSLTIDGIVYVI 215 (574)
Q Consensus 202 ---ae-~gitip~v~~VI 215 (574)
.. ..+...++.+||
T Consensus 134 ~~~~~~~~~~~~~~~~lV 151 (206)
T 1vec_A 134 LDLIKKGVAKVDHVQMIV 151 (206)
T ss_dssp HHHHHTTCSCCTTCCEEE
T ss_pred HHHHHcCCcCcccCCEEE
Confidence 12 233556666655
No 102
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=76.98 E-value=13 Score=34.45 Aligned_cols=76 Identities=16% Similarity=0.082 Sum_probs=52.8
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccc-
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIA- 202 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ia- 202 (574)
..+..+||.+|+++-+...++.+.+... ...++.+..++|+.+..++...++. ..|+|+|.--
T Consensus 90 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~------------~~Iiv~Tp~~l 153 (230)
T 2oxc_A 90 NLSTQILILAPTREIAVQIHSVITAIGI----KMEGLECHVFIGGTPLSQDKTRLKK------------CHIAVGSPGRI 153 (230)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTT----TSTTCCEEEECTTSCHHHHHHHTTS------------CSEEEECHHHH
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhc----ccCCceEEEEeCCCCHHHHHHhccC------------CCEEEECHHHH
Confidence 3467899999999999988888876432 1235778899999988777665431 4799999731
Q ss_pred -----cccccCCCeEEEE
Q 008209 203 -----ETSLTIDGIVYVI 215 (574)
Q Consensus 203 -----e~gitip~v~~VI 215 (574)
...+...++++||
T Consensus 154 ~~~~~~~~~~~~~~~~lV 171 (230)
T 2oxc_A 154 KQLIELDYLNPGSIRLFI 171 (230)
T ss_dssp HHHHHTTSSCGGGCCEEE
T ss_pred HHHHhcCCcccccCCEEE
Confidence 1234556665554
No 103
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=76.44 E-value=13 Score=34.04 Aligned_cols=76 Identities=21% Similarity=0.216 Sum_probs=52.5
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccc----
Q 008209 126 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNI---- 201 (574)
Q Consensus 126 ~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~i---- 201 (574)
+..+||.+|+++-+...++.+.+.... .++..+..++|+.+..++...+.. +. ..|+|+|.-
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~----~~~~~v~~~~g~~~~~~~~~~~~~---~~-------~~i~v~T~~~l~~ 147 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKY----MPNVKVAVFFGGLSIKKDEEVLKK---NC-------PHIVVGTPGRILA 147 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTT----STTCCEEEESCCSCHHHHHHHHHH---SC-------CSEEEECHHHHHH
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhh----CCCceEEEEeCCCChHHHHHHHhc---CC-------CCEEEeCHHHHHH
Confidence 458999999999988888888763321 236778899999987776655432 12 479999952
Q ss_pred -c-cccccCCCeEEEE
Q 008209 202 -A-ETSLTIDGIVYVI 215 (574)
Q Consensus 202 -a-e~gitip~v~~VI 215 (574)
. ...+...++++||
T Consensus 148 ~~~~~~~~~~~~~~lV 163 (220)
T 1t6n_A 148 LARNKSLNLKHIKHFI 163 (220)
T ss_dssp HHHTTSSCCTTCCEEE
T ss_pred HHHhCCCCcccCCEEE
Confidence 1 2345667777666
No 104
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=75.26 E-value=17 Score=34.25 Aligned_cols=78 Identities=12% Similarity=0.077 Sum_probs=53.5
Q ss_pred hcCCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccc
Q 008209 122 MCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNI 201 (574)
Q Consensus 122 ~~~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~i 201 (574)
....+..+||.+|+++-+...++.+.+.... .++.+..++|+.+..++...+.. . ..|+|+|+-
T Consensus 107 ~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~----~-------~~I~v~Tp~ 170 (249)
T 3ber_A 107 ETPQRLFALVLTPTRELAFQISEQFEALGSS-----IGVQSAVIVGGIDSMSQSLALAK----K-------PHIIIATPG 170 (249)
T ss_dssp HSCCSSCEEEECSSHHHHHHHHHHHHHHHGG-----GTCCEEEECTTSCHHHHHHHHHT----C-------CSEEEECHH
T ss_pred cCCCCceEEEEeCCHHHHHHHHHHHHHHhcc-----CCeeEEEEECCCChHHHHHHhcC----C-------CCEEEECHH
Confidence 3334568999999999999888888764432 24678889999887766544432 1 579999952
Q ss_pred -----cc--ccccCCCeEEEE
Q 008209 202 -----AE--TSLTIDGIVYVI 215 (574)
Q Consensus 202 -----ae--~gitip~v~~VI 215 (574)
+. ..+.+.++++||
T Consensus 171 ~l~~~l~~~~~~~l~~~~~lV 191 (249)
T 3ber_A 171 RLIDHLENTKGFNLRALKYLV 191 (249)
T ss_dssp HHHHHHHHSTTCCCTTCCEEE
T ss_pred HHHHHHHcCCCcCccccCEEE
Confidence 22 345677777665
No 105
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=72.67 E-value=16 Score=33.39 Aligned_cols=75 Identities=15% Similarity=0.044 Sum_probs=44.7
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccc-
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIA- 202 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ia- 202 (574)
..++.+||.+|++.-+...++.+.+.... .++.+..++|+.+..++...+.. .+|+|+|.--
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~------------~~iiv~Tp~~l 142 (224)
T 1qde_A 80 VKAPQALMLAPTRELALQIQKVVMALAFH-----MDIKVHACIGGTSFVEDAEGLRD------------AQIVVGTPGRV 142 (224)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTT-----SCCCEEEECC----------CTT------------CSEEEECHHHH
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHHhcc-----cCceEEEEeCCcchHHHHhcCCC------------CCEEEECHHHH
Confidence 34678999999999998888888764321 35678889998876655443321 4799998521
Q ss_pred -----cccccCCCeEEEE
Q 008209 203 -----ETSLTIDGIVYVI 215 (574)
Q Consensus 203 -----e~gitip~v~~VI 215 (574)
...+...++.+||
T Consensus 143 ~~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 143 FDNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp HHHHHTTSSCCTTCCEEE
T ss_pred HHHHHhCCcchhhCcEEE
Confidence 2344566666655
No 106
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=71.95 E-value=16 Score=42.26 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHcCCccCCCCcChhhhhhccCCC--CHHHHHHHHhccCCCCchhhHhHHhhcc
Q 008209 312 ETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPL--DPQMSKMLVESPKYNCSNEILSISAMLS 373 (574)
Q Consensus 312 ~~l~~al~~L~~lgald~~~~lT~lG~~~~~lpl--~p~~~~~ll~~~~~~c~~~~~~i~a~ls 373 (574)
..+++-++.|+.+|+||+++.+|..|+.++++.- +.-++-+|..+. |+-+++ ..|||+||
T Consensus 817 ~~~~~~~~vL~~l~~~~~~~~v~~kGr~a~~i~~~~el~~~e~~~~g~-~~~l~p-~~~aa~~s 878 (1010)
T 2xgj_A 817 DDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGN-FNELKP-EQAAALLS 878 (1010)
T ss_dssp HHHHHHHHHHHHHTSBCTTCCBCHHHHHHHTCCSSCHHHHHHHHHHTT-TTTCCH-HHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcCCCCcccHHHHHHHHhcCccHHHHHHHHHcCc-cCCCCH-HHHHHHHe
Confidence 4466778899999999998899999999999987 455677777775 443433 23444444
No 107
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=69.82 E-value=15 Score=34.14 Aligned_cols=76 Identities=13% Similarity=0.014 Sum_probs=44.1
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc----
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN---- 200 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~---- 200 (574)
.+..+||.+|+++-+...++.+.+... ..+..+..++|+.....+.. ....+. ..|+|+|+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~---~l~~~~-------~~Ilv~Tp~~l~ 161 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGD-----YMGATCHACIGGTNVRNEMQ---KLQAEA-------PHIVVGTPGRVF 161 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTT-----TTTCCEEEECC----------------CC-------CSEEEECHHHHH
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhh-----hcCceEEEEECCCchHHHHH---HHhcCC-------CCEEEECHHHHH
Confidence 467899999999999988888876432 13466777888876544332 222232 57999993
Q ss_pred -cccc-cccCCCeEEEE
Q 008209 201 -IAET-SLTIDGIVYVI 215 (574)
Q Consensus 201 -iae~-gitip~v~~VI 215 (574)
.... .+...++.+||
T Consensus 162 ~~l~~~~~~~~~~~~lV 178 (237)
T 3bor_A 162 DMLNRRYLSPKWIKMFV 178 (237)
T ss_dssp HHHHTTSSCSTTCCEEE
T ss_pred HHHHhCCcCcccCcEEE
Confidence 3332 35566677665
No 108
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=69.61 E-value=4.9 Score=47.36 Aligned_cols=79 Identities=11% Similarity=0.194 Sum_probs=61.9
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc-ccc
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN-IAE 203 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~-iae 203 (574)
.+.+++|.+|++.-+...++.+.+.+.. .++.+..+++..+..++..+++....|. ..|+|+|. .+.
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~-----~~i~v~~l~~~~~~~~~~~~~~~l~~g~-------~dIvV~T~~ll~ 718 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFAN-----WPVRIEMISRFRSAKEQTQILAEVAEGK-------IDILIGTHKLLQ 718 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTT-----TTCCEEEESTTSCHHHHHHHHHHHHTTC-------CSEEEECTHHHH
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhc-----CCCeEEEEeCCCCHHHHHHHHHHHhcCC-------CCEEEECHHHHh
Confidence 4568999999999998888888775432 3567888999999988888877777766 78999994 444
Q ss_pred ccccCCCeEEEE
Q 008209 204 TSLTIDGIVYVI 215 (574)
Q Consensus 204 ~gitip~v~~VI 215 (574)
..+...++.+||
T Consensus 719 ~~~~~~~l~lvI 730 (1151)
T 2eyq_A 719 SDVKFKDLGLLI 730 (1151)
T ss_dssp SCCCCSSEEEEE
T ss_pred CCccccccceEE
Confidence 567888888766
No 109
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=69.18 E-value=6.7 Score=35.47 Aligned_cols=73 Identities=18% Similarity=0.154 Sum_probs=49.6
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc----
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN---- 200 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~---- 200 (574)
.+..+||.+|++.-+...++.+.+.. ..+.+..++|+.....+...+.. + ..|+|+|+
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~---~--------~~i~v~T~~~l~ 132 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVA-------PHLKVVAVYGGTGYGKQKEALLR---G--------ADAVVATPGRAL 132 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHC-------TTSCEEEECSSSCSHHHHHHHHH---C--------CSEEEECHHHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHh-------hcceEEEEECCCChHHHHHHhhC---C--------CCEEEECHHHHH
Confidence 46789999999999998888887642 23667888988876555443322 1 47999995
Q ss_pred -ccc-ccccCCCeEEEE
Q 008209 201 -IAE-TSLTIDGIVYVI 215 (574)
Q Consensus 201 -iae-~gitip~v~~VI 215 (574)
... ..+...++++||
T Consensus 133 ~~~~~~~~~~~~~~~iV 149 (207)
T 2gxq_A 133 DYLRQGVLDLSRVEVAV 149 (207)
T ss_dssp HHHHHTSSCCTTCSEEE
T ss_pred HHHHcCCcchhhceEEE
Confidence 222 234566676665
No 110
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=67.87 E-value=7.7 Score=35.85 Aligned_cols=74 Identities=16% Similarity=0.165 Sum_probs=46.9
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc----
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN---- 200 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~---- 200 (574)
.+..+||.+|+++-+..+.+.+.+.. ..+..+..++|+.+..++...+.. + ..|+|+|+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---~--------~~iiv~Tp~~l~ 155 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYS------YKGLKSICIYGGRNRNGQIEDISK---G--------VDIIIATPGRLN 155 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHC------CTTCCEEEECC------CHHHHHS---C--------CSEEEECHHHHH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhc------ccCceEEEEECCCChHHHHHHhcC---C--------CCEEEECHHHHH
Confidence 56789999999999998888887632 245678888998876655444332 1 47999995
Q ss_pred --cccccccCCCeEEEE
Q 008209 201 --IAETSLTIDGIVYVI 215 (574)
Q Consensus 201 --iae~gitip~v~~VI 215 (574)
+....+.+.++++||
T Consensus 156 ~~~~~~~~~~~~~~~lV 172 (228)
T 3iuy_A 156 DLQMNNSVNLRSITYLV 172 (228)
T ss_dssp HHHHTTCCCCTTCCEEE
T ss_pred HHHHcCCcCcccceEEE
Confidence 122345667777666
No 111
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=67.68 E-value=12 Score=35.19 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=50.7
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccc---
Q 008209 126 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIA--- 202 (574)
Q Consensus 126 ~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ia--- 202 (574)
+..+||.+|+++-+...++.+.+.... .++.+..++|+.+..++...+.. + ..|+|+|.--
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~---~--------~~Ivv~Tp~~l~~ 163 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLN-----TPLRSCVVYGGADTHSQIREVQM---G--------CHLLVATPGRLVD 163 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTT-----SSCCEEEECSSSCSHHHHHHHSS---C--------CSEEEECHHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcc-----CCceEEEEECCCCHHHHHHHhCC---C--------CCEEEECHHHHHH
Confidence 468999999999999988888764322 35677888998877665544432 1 5799999621
Q ss_pred ---cccccCCCeEEEE
Q 008209 203 ---ETSLTIDGIVYVI 215 (574)
Q Consensus 203 ---e~gitip~v~~VI 215 (574)
...+.+.++.+||
T Consensus 164 ~l~~~~~~~~~~~~lV 179 (253)
T 1wrb_A 164 FIEKNKISLEFCKYIV 179 (253)
T ss_dssp HHHTTSBCCTTCCEEE
T ss_pred HHHcCCCChhhCCEEE
Confidence 2234566666655
No 112
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=65.45 E-value=5.1 Score=40.96 Aligned_cols=64 Identities=14% Similarity=0.199 Sum_probs=49.4
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 200 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ 200 (574)
..++.+||.+|++.-+...++.+.+.. . .++.+..+||+.+..++...++....+. ..|+|+|+
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~----~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~-------~~Iiv~Tp 125 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLA----D--EKVKIFGFYSSMKKEEKEKFEKSFEEDD-------YHILVFST 125 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHC----C--SSCCEEECCTTSCHHHHHHHHHHHHHTC-------CSEEEEEH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHc----c--CCceEEEEECCCChhhHHHHHHHhhcCC-------CCEEEECH
Confidence 467899999999999999988887632 1 4678999999999876655555554443 58999996
No 113
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=64.16 E-value=11 Score=35.91 Aligned_cols=75 Identities=9% Similarity=0.112 Sum_probs=52.3
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc----
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN---- 200 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~---- 200 (574)
.+..+||.+|+++-+...++.+.+.... ....+..++|+....++...+... ..|||+|+
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~-----------~~Iiv~Tp~~l~ 188 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTH-----HVHTYGLIMGGSNRSAEAQKLGNG-----------INIIVATPGRLL 188 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTT-----CCSCEEEECSSSCHHHHHHHHHHC-----------CSEEEECHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhh-----cCceEEEEECCCCHHHHHHHhcCC-----------CCEEEEcHHHHH
Confidence 4678999999999999998888875432 345677888888876665443321 47999994
Q ss_pred --cccc-cccCCCeEEEE
Q 008209 201 --IAET-SLTIDGIVYVI 215 (574)
Q Consensus 201 --iae~-gitip~v~~VI 215 (574)
+... ++...++.+||
T Consensus 189 ~~~~~~~~~~~~~l~~lV 206 (262)
T 3ly5_A 189 DHMQNTPGFMYKNLQCLV 206 (262)
T ss_dssp HHHHHCTTCCCTTCCEEE
T ss_pred HHHHccCCcccccCCEEE
Confidence 2222 36677777765
No 114
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=59.24 E-value=46 Score=38.43 Aligned_cols=61 Identities=20% Similarity=0.237 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHcCCccCCCCcChhhhhhccCCC--CHHHHHHHHhccCCCCchhhHhHHhhccC
Q 008209 312 ETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPL--DPQMSKMLVESPKYNCSNEILSISAMLSV 374 (574)
Q Consensus 312 ~~l~~al~~L~~lgald~~~~lT~lG~~~~~lpl--~p~~~~~ll~~~~~~c~~~~~~i~a~ls~ 374 (574)
..+++-+..|..+|+||+++.+|.-||.++++.- +.-++-+|..+.. +-+++ ..|||+||+
T Consensus 800 ~~~~~~~~vL~~l~~~~~~~~v~~kgr~a~~i~~~~el~~te~~~~~~~-~~l~~-~~~~a~ls~ 862 (997)
T 4a4z_A 800 PDYEKRLAVLKDTEFIDQNHNVLLKGRVACEINSGYELVLTELILDNFL-GSFEP-EEIVALLSV 862 (997)
T ss_dssp HHHHHHHHHHHHTTSBCTTCCBCHHHHHHTTCCSSCHHHHHHHHHSSGG-GGCCH-HHHHHHHGG
T ss_pred HHHHHHHHHHHHcCCcCCCCcccHHhHHHhhhcCccHHHHHHHHHhCcc-cCCCH-HHHHHHHhh
Confidence 3456678889999999999999999999999986 4556777777653 33333 235555554
No 115
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=59.03 E-value=56 Score=32.70 Aligned_cols=73 Identities=18% Similarity=0.146 Sum_probs=51.4
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc-----c
Q 008209 127 GDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN-----I 201 (574)
Q Consensus 127 g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~-----i 201 (574)
..+||.+|+++-+..+++.+.+.... .++.+..+||+.+..++...+.. + ..|+|+|. .
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~---~--------~~I~v~Tp~~l~~~ 165 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYR-----SRVRPCVVYGGADIGQQIRDLER---G--------CHLLVATPGRLVDM 165 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTT-----SSCCEEEECSSSCHHHHHHHHTT---C--------CSEEEECHHHHHHH
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCc-----CCceEEEEECCCCHHHHHHHhhC---C--------CCEEEEChHHHHHH
Confidence 57999999999999998888764322 45678889999988776554432 1 47999996 2
Q ss_pred ccc-cccCCCeEEEE
Q 008209 202 AET-SLTIDGIVYVI 215 (574)
Q Consensus 202 ae~-gitip~v~~VI 215 (574)
... .+...++.+||
T Consensus 166 l~~~~~~~~~~~~iV 180 (417)
T 2i4i_A 166 MERGKIGLDFCKYLV 180 (417)
T ss_dssp HHTTSBCCTTCCEEE
T ss_pred HHcCCcChhhCcEEE
Confidence 222 34566677666
No 116
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=56.92 E-value=17 Score=37.51 Aligned_cols=74 Identities=14% Similarity=0.121 Sum_probs=52.1
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccc----
Q 008209 126 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNI---- 201 (574)
Q Consensus 126 ~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~i---- 201 (574)
+..+||.+|+++-+..+++.+.+... ...+.+..+||+.+..++...+.. + ..|+|+|+=
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~-----~~~~~~~~~~gg~~~~~~~~~l~~---~--------~~Ivv~Tp~~l~~ 192 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAF-----ESYLKIGIVYGGTSFRHQNECITR---G--------CHVVIATPGRLLD 192 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTT-----TSSCCCCEECTTSCHHHHHHHHTT---C--------CSEEEECHHHHHH
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhc-----cCCcEEEEEECCCCHHHHHHHhhc---C--------CCEEEEChHHHHH
Confidence 56899999999999988888876432 134667788999998777655432 2 579999952
Q ss_pred -cc-ccccCCCeEEEE
Q 008209 202 -AE-TSLTIDGIVYVI 215 (574)
Q Consensus 202 -ae-~gitip~v~~VI 215 (574)
.+ ..++..++++||
T Consensus 193 ~l~~~~~~l~~~~~lV 208 (434)
T 2db3_A 193 FVDRTFITFEDTRFVV 208 (434)
T ss_dssp HHHTTSCCCTTCCEEE
T ss_pred HHHhCCcccccCCeEE
Confidence 22 234566777666
No 117
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=56.61 E-value=39 Score=30.69 Aligned_cols=79 Identities=9% Similarity=0.006 Sum_probs=49.6
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc----
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN---- 200 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~---- 200 (574)
.+..+||.+|+++-+...++.+.+....... .....+..++|+.+..++.+.+. .+ ..|+|+|.
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~---~~--------~~Iiv~Tp~~l~ 138 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPK-DRMIVARCLIGGTDKQKALEKLN---VQ--------PHIVIGTPGRIN 138 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCG-GGCCCEEEECCCSHHHHTTCCCS---SC--------CSEEEECHHHHH
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhccc-ccceEEEEEeCCCCHHHHHHHcC---CC--------CCEEEeCHHHHH
Confidence 4678999999999999888888765432111 11567888899887665443332 11 57999995
Q ss_pred -cccc-cccCCCeEEEE
Q 008209 201 -IAET-SLTIDGIVYVI 215 (574)
Q Consensus 201 -iae~-gitip~v~~VI 215 (574)
.... .+...++.+||
T Consensus 139 ~~l~~~~~~~~~~~~lV 155 (219)
T 1q0u_A 139 DFIREQALDVHTAHILV 155 (219)
T ss_dssp HHHHTTCCCGGGCCEEE
T ss_pred HHHHcCCCCcCcceEEE
Confidence 2222 23445555544
No 118
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=53.68 E-value=11 Score=40.82 Aligned_cols=60 Identities=13% Similarity=0.058 Sum_probs=47.7
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCC--CCCCCCCCCCCcEEEEecc
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPA--PPPSKEGGPPGRKIVVSTN 200 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~--~~g~~~~~~~~~kvivaT~ 200 (574)
.+|.+||.+|+++=+....+.|.+ .++.+..++|+++..++..++... ..+. .+|+++|+
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~---------~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~-------~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQ---------LGISATMLNASSSKEHVKWVHAEMVNKNSE-------LKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHH---------HTCCEEECCSSCCHHHHHHHHHHHHCTTCC-------CCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHh---------cCCcEEEEeCCCCHHHHHHHHHHhhcccCC-------CCEEEECh
Confidence 367999999999999888888876 246788999999999887776544 2333 78999998
No 119
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=53.56 E-value=57 Score=32.31 Aligned_cols=53 Identities=11% Similarity=0.101 Sum_probs=9.6
Q ss_pred CcChhhhhhccCCCCHHHHHHHHhccCCCC-chhhHhHHhhccC-CCcccCChhH
Q 008209 332 NLTEMGEKMSEFPLDPQMSKMLVESPKYNC-SNEILSISAMLSV-PNCFVRPREA 384 (574)
Q Consensus 332 ~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c-~~~~~~i~a~ls~-~~~f~~~~~~ 384 (574)
..|++|+++|.+++++..++++.....-.. ..+++.+.|.-++ .++.++..+.
T Consensus 14 ~~t~lGriaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~EF~~i~vR~~E~ 68 (339)
T 2q0z_X 14 APLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHED 68 (339)
T ss_dssp -----------------------------CCHHHHHHHHHTSGGGTTCCCCTTCH
T ss_pred ccCcHHHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHHhchHHHhcCCCCcchH
Confidence 479999999999999999999876654332 3344444443222 3444454443
No 120
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=52.08 E-value=69 Score=31.85 Aligned_cols=75 Identities=9% Similarity=0.023 Sum_probs=50.8
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc----
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN---- 200 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~---- 200 (574)
.+..+||.+|++.-+...++.+.+.... .+..+..++|+....++..... +. ..|+|+|.
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~----~~-------~~Ivv~T~~~l~ 151 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKH-----CGISCMVTTGGTNLRDDILRLN----ET-------VHILVGTPGRVL 151 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT-----TTCCEEEECSSSCHHHHHHHTT----SC-------CSEEEECHHHHH
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcc-----cCceEEEEeCCcchHHHHHHhc----CC-------CCEEEEchHHHH
Confidence 4568999999999998888888764322 3567888899887665543322 11 57999994
Q ss_pred -ccc-ccccCCCeEEEE
Q 008209 201 -IAE-TSLTIDGIVYVI 215 (574)
Q Consensus 201 -iae-~gitip~v~~VI 215 (574)
... ....+.++.+||
T Consensus 152 ~~~~~~~~~~~~~~~vI 168 (400)
T 1s2m_A 152 DLASRKVADLSDCSLFI 168 (400)
T ss_dssp HHHHTTCSCCTTCCEEE
T ss_pred HHHHhCCcccccCCEEE
Confidence 222 335567777666
No 121
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=51.16 E-value=15 Score=42.93 Aligned_cols=131 Identities=20% Similarity=0.243 Sum_probs=68.9
Q ss_pred HHHHHHHHHHcCCccCCCCcChhhhhhccCCC--CHHHHHHHHhccCCCCchhhHhHHhhccC---C----C-cccCCh-
Q 008209 314 LMRALEVLNYLGALDDDGNLTEMGEKMSEFPL--DPQMSKMLVESPKYNCSNEILSISAMLSV---P----N-CFVRPR- 382 (574)
Q Consensus 314 l~~al~~L~~lgald~~~~lT~lG~~~~~lpl--~p~~~~~ll~~~~~~c~~~~~~i~a~ls~---~----~-~f~~~~- 382 (574)
+++-+..|..+|+||.++.+|..||.++++.- +.-++-+|..+. |+-+++ ..|||+||+ + + +-..+.
T Consensus 917 ~~~~~~vL~~l~~~~~~~~v~~kgr~a~~i~~~~el~~~e~~~~~~-~~~l~~-~~~aa~~s~~v~~~~~~~~~~~~~~l 994 (1108)
T 3l9o_A 917 LRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGN-FNELKP-EQAAALLSCFAFQERCKEAPRLKPEL 994 (1108)
T ss_dssp HHHHHHHHHHHTSCTTTCCCSHHHHHHHC-CCTTHHHHHHHHHHHC-CCSSCC-THHHHHTCC-----------------
T ss_pred HHHHHHHHHHcCCcCCCCcCcHHhHHHHHhcCccHHHHHHHHHhCc-ccCCCH-HHHHHHHhheeeecccCCCCCCCHHH
Confidence 44556788999999999999999999999985 455677777775 343433 246666665 1 1 101110
Q ss_pred -hHHHHHHHHHHhh------CCCCC---cHH-----HHHHHHHHHHhCCCCchhHhhhcCCHHHHHHHHHHHHHHHHHHH
Q 008209 383 -EAQKAADEAKARF------GHIDG---DHL-----TLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMA 447 (574)
Q Consensus 383 -~~~~~~~~~~~~~------~~~~s---D~l-----~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~ir~qL~~~l~ 447 (574)
..........+.. ++-.- |++ .++.+..+|.++..-.+-|..-.+....+-++. +||.++|+
T Consensus 995 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~Wa~g~~f~~i~~~t~~~eG~~vR~~---~rl~e~l~ 1071 (1108)
T 3l9o_A 995 AEPLKAMREIAAKIAKIMKDSKIEVVEKDYVESFRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMF---KRLEELVK 1071 (1108)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHCCSCHHHHHHHHC----CCGGGTC--CHHHHHHHH---HHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCChHHhccCCChHHHHHHHHHhCCCCHHHHHhcCCCCchhhhhHH---HHHHHHHH
Confidence 0001111111100 01111 222 356677788765555566766666655544443 77777776
Q ss_pred Hc
Q 008209 448 RF 449 (574)
Q Consensus 448 ~~ 449 (574)
+.
T Consensus 1072 q~ 1073 (1108)
T 3l9o_A 1072 EL 1073 (1108)
T ss_dssp CC
T ss_pred HH
Confidence 54
No 122
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=49.96 E-value=15 Score=33.41 Aligned_cols=43 Identities=26% Similarity=0.417 Sum_probs=23.7
Q ss_pred CCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccC
Q 008209 28 LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSAT 72 (574)
Q Consensus 28 ~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSAT 72 (574)
...+..+|||||+|. +..+..-.+++.+-....+..+|+.+..
T Consensus 123 ~~~~~~vlviDe~~~--l~~~~~~~l~~~l~~~~~~~~~i~~t~~ 165 (250)
T 1njg_A 123 ARGRFKVYLIDEVHM--LSRHSFNALLKTLEEPPEHVKFLLATTD 165 (250)
T ss_dssp SSSSSEEEEEETGGG--SCHHHHHHHHHHHHSCCTTEEEEEEESC
T ss_pred hcCCceEEEEECccc--ccHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 344568999999996 3444433333333223345556665543
No 123
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=49.34 E-value=17 Score=36.04 Aligned_cols=50 Identities=20% Similarity=0.229 Sum_probs=29.5
Q ss_pred HHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCC-CccEEEEcc
Q 008209 19 LLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRP-DLKLVVMSA 71 (574)
Q Consensus 19 Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~-~~klvlmSA 71 (574)
+.+.+...|...++.+|||||+|. +..+..=+++|. +...+ +..+|+.+-
T Consensus 96 l~~~~~~~~~~~~~kvviIdead~--l~~~a~naLLk~-lEep~~~~~~Il~t~ 146 (334)
T 1a5t_A 96 VTEKLNEHARLGGAKVVWVTDAAL--LTDAAANALLKT-LEEPPAETWFFLATR 146 (334)
T ss_dssp HHHHTTSCCTTSSCEEEEESCGGG--BCHHHHHHHHHH-HTSCCTTEEEEEEES
T ss_pred HHHHHhhccccCCcEEEEECchhh--cCHHHHHHHHHH-hcCCCCCeEEEEEeC
Confidence 334444556678899999999995 444444344443 44433 345555543
No 124
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=47.93 E-value=21 Score=35.33 Aligned_cols=44 Identities=11% Similarity=0.185 Sum_probs=31.2
Q ss_pred CccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCH
Q 008209 31 RYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 75 (574)
Q Consensus 31 ~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~ 75 (574)
...+|++||+|.-. ..|+++.+++.......++-+|+.++|++.
T Consensus 132 ~~~ii~lDE~d~l~-~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 132 RKTLILIQNPENLL-SEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp CEEEEEEECCSSSC-CTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred CceEEEEecHHHhh-cchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 45699999999544 778888877643223345677888999863
No 125
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=47.54 E-value=44 Score=31.06 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=34.7
Q ss_pred eEEEchHHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccC
Q 008209 11 GRYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSAT 72 (574)
Q Consensus 11 I~~~T~g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSAT 72 (574)
+.+.+..-++..+...-.-.++++|||||++- +..+ .+..++.+... ++.+|+..-.
T Consensus 69 ~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~--l~~~-~ve~l~~L~~~--gi~Vil~Gl~ 125 (223)
T 2b8t_A 69 VEVESAPEILNYIMSNSFNDETKVIGIDEVQF--FDDR-ICEVANILAEN--GFVVIISGLD 125 (223)
T ss_dssp EEESSTHHHHHHHHSTTSCTTCCEEEECSGGG--SCTH-HHHHHHHHHHT--TCEEEEECCS
T ss_pred cccCCHHHHHHHHHHHhhCCCCCEEEEecCcc--CcHH-HHHHHHHHHhC--CCeEEEEecc
Confidence 34455556666666543345689999999995 3344 44455554432 6777776553
No 126
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=46.90 E-value=21 Score=35.39 Aligned_cols=50 Identities=30% Similarity=0.468 Sum_probs=28.3
Q ss_pred HHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhC-CCccEEEEc
Q 008209 18 MLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR-PDLKLVVMS 70 (574)
Q Consensus 18 ~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~-~~~klvlmS 70 (574)
-++..+...|...+..+|||||+|. +..+..-.+++ .+... ++..+|+.+
T Consensus 106 ~l~~~~~~~~~~~~~~vliiDe~~~--l~~~~~~~Ll~-~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 106 DLLDNVQYAPARGRFKVYLIDEVHM--LSRHSFNALLK-TLEEPPEHVKFLLAT 156 (373)
T ss_dssp HHHHHTTSCCSSSSSEEEEEECGGG--SCHHHHHHHHH-HHHSCCSSEEEEEEE
T ss_pred HHHHHHhhccccCCeEEEEEECcch--hcHHHHHHHHH-HHhcCCCceEEEEEe
Confidence 3445555556677889999999996 34444333333 33333 334444443
No 127
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=46.85 E-value=26 Score=32.32 Aligned_cols=59 Identities=10% Similarity=-0.012 Sum_probs=41.6
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 200 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ 200 (574)
.+..+||.+|+++-+...++.+.+... ..++.+..++|+.+..++...+. . ..|+|+|.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~-----~-------~~iiv~Tp 154 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGK-----NHDFSAGLIIGGKDLKHEAERIN-----N-------INILVCTP 154 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTT-----TSSCCEEEECCC--CHHHHHHHT-----T-------CSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhC-----CCCeeEEEEECCCCHHHHHHhCC-----C-------CCEEEECH
Confidence 467899999999999988888876432 13467888999987665554442 1 57999995
No 128
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=46.74 E-value=63 Score=31.93 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=45.2
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 200 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ 200 (574)
.++.+||.+|++.-++..++.+.+.... .+++.+..++|+.+..++...+.. +. ..|+|+|.
T Consensus 75 ~~~~~lil~P~~~L~~q~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~---~~-------~~iiv~T~ 136 (391)
T 1xti_A 75 GQVSVLVMCHTRELAFQISKEYERFSKY----MPNVKVAVFFGGLSIKKDEEVLKK---NC-------PHIVVGTP 136 (391)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTT----CTTCCEEEECTTSCHHHHHHHHHH---SC-------CSEEEECH
T ss_pred CCeeEEEECCCHHHHHHHHHHHHHHHhh----CCCeEEEEEeCCCCHHHHHHHHhc---CC-------CCEEEECH
Confidence 3568999999999988888888764321 236788999999987776655432 22 47999985
No 129
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=46.58 E-value=21 Score=34.96 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=29.6
Q ss_pred HHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCC-CccEEEEc
Q 008209 19 LLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRP-DLKLVVMS 70 (574)
Q Consensus 19 Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~-~~klvlmS 70 (574)
++..+...|...++.+|||||+|. +..+..=+ |.+.+...| ...+|+.+
T Consensus 70 li~~~~~~p~~~~~kvviIdead~--lt~~a~na-LLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 70 IKDFLNYSPELYTRKYVIVHDCER--MTQQAANA-FLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp HHHHHTSCCSSSSSEEEEETTGGG--BCHHHHHH-THHHHHSCCTTEEEEEEE
T ss_pred HHHHHhhccccCCceEEEeccHHH--hCHHHHHH-HHHHHhCCCCCeEEEEEE
Confidence 455555677788999999999995 44443333 334445544 34444443
No 130
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=45.71 E-value=18 Score=33.62 Aligned_cols=76 Identities=13% Similarity=0.209 Sum_probs=47.6
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc----
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN---- 200 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~---- 200 (574)
.+..+||.+|+++-+...++.+.+.... .++.+..++++.....+ +.....+. ..|+|+|+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~-------~~I~v~Tp~~l~ 161 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEG-----TGFRIHMIHKAAVAAKK---FGPKSSKK-------FDILVTTPNRLI 161 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTT-----SCCCEECCCHHHHHHTT---TSTTSCCC-------CCEEEECHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcc-----cCceEEEEecCccHHHH---hhhhhcCC-------CCEEEECHHHHH
Confidence 3457999999999999998888764322 34667777766433222 12222222 68999993
Q ss_pred -cccc---cccCCCeEEEE
Q 008209 201 -IAET---SLTIDGIVYVI 215 (574)
Q Consensus 201 -iae~---gitip~v~~VI 215 (574)
.... .+++.++.+||
T Consensus 162 ~~l~~~~~~~~~~~~~~lV 180 (245)
T 3dkp_A 162 YLLKQDPPGIDLASVEWLV 180 (245)
T ss_dssp HHHHSSSCSCCCTTCCEEE
T ss_pred HHHHhCCCCcccccCcEEE
Confidence 2212 36677787766
No 131
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=45.54 E-value=26 Score=36.72 Aligned_cols=59 Identities=8% Similarity=0.139 Sum_probs=43.2
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc
Q 008209 126 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 200 (574)
Q Consensus 126 ~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ 200 (574)
++.+||.+|++.-+....+.+.+.... .++.+..+||+.+..++...+.. + ..|+|+|.
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~---~--------~~i~v~T~ 110 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFER-----LGYNIASISGATSDSVSVQHIIE---D--------NDIIILTP 110 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHT-----TTCCEEEECTTTGGGSCHHHHHH---H--------CSEEEECH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhcc-----CCcEEEEEcCCCcchhhHHHHhc---C--------CCEEEECH
Confidence 788999999999998888888875543 25778999999876554332221 1 47888885
No 132
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=45.29 E-value=48 Score=32.83 Aligned_cols=74 Identities=15% Similarity=0.053 Sum_probs=50.9
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccc--
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIA-- 202 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ia-- 202 (574)
.++.+||.+|++.-+...++.+.+.... .+..+..++|+....++...+.. ..|+|+|.-.
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~------------~~i~v~T~~~l~ 150 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFH-----MDIKVHACIGGTSFVEDAEGLRD------------AQIVVGTPGRVF 150 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT-----SCCCEEEECSSCCHHHHHHHHHH------------CSEEEECHHHHH
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhcc-----CCeeEEEEeCCCchHHHHhhcCC------------CCEEEECHHHHH
Confidence 4679999999999998888888764322 35678889999887766554431 4689998421
Q ss_pred ----cccccCCCeEEEE
Q 008209 203 ----ETSLTIDGIVYVI 215 (574)
Q Consensus 203 ----e~gitip~v~~VI 215 (574)
...+...++.+||
T Consensus 151 ~~~~~~~~~~~~~~~vI 167 (394)
T 1fuu_A 151 DNIQRRRFRTDKIKMFI 167 (394)
T ss_dssp HHHHTTSSCCTTCCEEE
T ss_pred HHHHhCCcchhhCcEEE
Confidence 1234455666655
No 133
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=44.85 E-value=28 Score=31.79 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=28.8
Q ss_pred CCccEEEEecC----CCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHH
Q 008209 30 ERYKVIVLDEA----HERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAE 76 (574)
Q Consensus 30 ~~~~~vIiDE~----HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~ 76 (574)
.+|++||+||+ +-+-+..+-++.++.. +....-+|+.+--...+
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~---Rp~~~~vIlTGr~ap~~ 166 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNA---RPGHQTVIITGRGCHRD 166 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHT---SCTTCEEEEECSSCCHH
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHh---CcCCCEEEEECCCCcHH
Confidence 57999999999 4456677777666643 44455566665554433
No 134
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=43.73 E-value=16 Score=42.81 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=56.1
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccc-
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIA- 202 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ia- 202 (574)
..++.+||.+|+++=+..+++.+.+ + . ..++.+..+||+.+..++...++....|. ..|+|+|+=.
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~-l---~--~~~i~v~~l~Gg~~~~er~~~~~~l~~g~-------~~IlV~Tp~rL 185 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQK-L---A--DEKVKIFGFYSSMKKEEKEKFEKSFEEDD-------YHILVFSTQFV 185 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHT-T---S--CTTSCEEEECTTCCTTHHHHHHHHHHTSC-------CSEEEEEHHHH
T ss_pred hcCCeEEEEechHHHHHHHHHHHHH-h---h--CCCCeEEEEeCCCCHHHHHHHHHHHhCCC-------CCEEEECHHHH
Confidence 4678999999999999999888876 2 1 24678999999999866655555555554 6899999521
Q ss_pred ----cccccCCCeEEEE
Q 008209 203 ----ETSLTIDGIVYVI 215 (574)
Q Consensus 203 ----e~gitip~v~~VI 215 (574)
+. +...++.+||
T Consensus 186 ~~~l~~-l~~~~l~~lV 201 (1104)
T 4ddu_A 186 SKNREK-LSQKRFDFVF 201 (1104)
T ss_dssp HHSHHH-HHTSCCSEEE
T ss_pred HHHHHh-hcccCcCEEE
Confidence 11 4456677665
No 135
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=43.16 E-value=72 Score=31.86 Aligned_cols=76 Identities=11% Similarity=0.051 Sum_probs=52.2
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc---
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN--- 200 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~--- 200 (574)
..++.+||.+|++.-+...++.+.+... ..++.+..++|+....++....... ..|+|+|.
T Consensus 103 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~-----------~~ivv~Tp~~l 166 (410)
T 2j0s_A 103 VRETQALILAPTRELAVQIQKGLLALGD-----YMNVQCHACIGGTNVGEDIRKLDYG-----------QHVVAGTPGRV 166 (410)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTT-----TTTCCEEEECTTSCHHHHHHHHHHC-----------CSEEEECHHHH
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHHHhc-----cCCeEEEEEECCCCHHHHHHHhhcC-----------CCEEEcCHHHH
Confidence 3578999999999999888888876322 2356788889998877765544321 47999994
Q ss_pred --cccc-cccCCCeEEEE
Q 008209 201 --IAET-SLTIDGIVYVI 215 (574)
Q Consensus 201 --iae~-gitip~v~~VI 215 (574)
.+.. .+...++.+||
T Consensus 167 ~~~l~~~~~~~~~~~~vV 184 (410)
T 2j0s_A 167 FDMIRRRSLRTRAIKMLV 184 (410)
T ss_dssp HHHHHTTSSCCTTCCEEE
T ss_pred HHHHHhCCccHhheeEEE
Confidence 2322 35556666655
No 136
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=43.10 E-value=33 Score=33.78 Aligned_cols=56 Identities=14% Similarity=0.088 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCC-CccEEEEccCCC
Q 008209 17 GMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRP-DLKLVVMSATLE 74 (574)
Q Consensus 17 g~Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~-~~klvlmSATl~ 74 (574)
.-++..+..-|.+.+..+|||||+|. .+..+..=++ ...+...+ +..+|+.+.+++
T Consensus 62 ~~l~~~~~~~plf~~~kvvii~~~~~-kl~~~~~~aL-l~~le~p~~~~~~il~~~~~~ 118 (343)
T 1jr3_D 62 NAIFSLCQAMSLFASRQTLLLLLPEN-GPNAAINEQL-LTLTGLLHDDLLLIVRGNKLS 118 (343)
T ss_dssp HHHHHHHHHHHHCCSCEEEEEECCSS-CCCTTHHHHH-HHHHTTCBTTEEEEEEESCCC
T ss_pred HHHHHHhcCcCCccCCeEEEEECCCC-CCChHHHHHH-HHHHhcCCCCeEEEEEcCCCC
Confidence 45566666667788999999999995 2333322222 23334333 555555554554
No 137
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=42.23 E-value=35 Score=35.88 Aligned_cols=74 Identities=11% Similarity=0.051 Sum_probs=46.6
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccccc--
Q 008209 126 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAE-- 203 (574)
Q Consensus 126 ~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~iae-- 203 (574)
++.+||.+|++.-+....+.+.+.... .++.+..+||+.+..++...+.. + ..|+|+|.-.-
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~---~--------~~i~v~T~~~l~~ 118 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFER-----QGYSVQGISGENFSNVSVEKVIE---D--------SDIIVVTPQILVN 118 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGG-----GTCCEEECCCC-----CHHHHHH---H--------CSEEEECHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcc-----cCceEEEEeCCCCcchhHHHhhC---C--------CCEEEECHHHHHH
Confidence 788999999999999888888875543 25778899999876654333221 1 46888885321
Q ss_pred ---cc-c-cCCCeEEEE
Q 008209 204 ---TS-L-TIDGIVYVI 215 (574)
Q Consensus 204 ---~g-i-tip~v~~VI 215 (574)
.+ + ...++.+||
T Consensus 119 ~~~~~~~~~~~~~~~vV 135 (556)
T 4a2p_A 119 SFEDGTLTSLSIFTLMI 135 (556)
T ss_dssp HHHSSSCCCSTTCSEEE
T ss_pred HHHhCcccccccCCEEE
Confidence 11 3 456666555
No 138
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=41.14 E-value=71 Score=30.84 Aligned_cols=73 Identities=14% Similarity=-0.029 Sum_probs=46.4
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecccc--
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIA-- 202 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ia-- 202 (574)
.+..+||.+|+++-+..+++.+.+... ....+.+...+++.....+. ... ..|||+|+--
T Consensus 161 ~~~~~lil~PtreLa~Q~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~-------~~~-------~~IlV~TP~~l~ 222 (300)
T 3fmo_B 161 KYPQCLCLSPTYELALQTGKVIEQMGK----FYPELKLAYAVRGNKLERGQ-------KIS-------EQIVIGTPGTVL 222 (300)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTT----TSTTCCEEEESTTCCCCTTC-------CCC-------CSEEEECHHHHH
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHHh----hCCCcEEEEEeCCccHhhhh-------cCC-------CCEEEECHHHHH
Confidence 345799999999998888888766322 22356677777765432211 111 5799999632
Q ss_pred ----c-ccccCCCeEEEE
Q 008209 203 ----E-TSLTIDGIVYVI 215 (574)
Q Consensus 203 ----e-~gitip~v~~VI 215 (574)
. ..+++.++.+||
T Consensus 223 ~~l~~~~~~~l~~l~~lV 240 (300)
T 3fmo_B 223 DWCSKLKFIDPKKIKVFV 240 (300)
T ss_dssp HHHTTTCCCCGGGCSEEE
T ss_pred HHHHhcCCCChhhceEEE
Confidence 1 245667777765
No 139
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=39.58 E-value=1.4e+02 Score=29.63 Aligned_cols=76 Identities=11% Similarity=0.023 Sum_probs=51.1
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc----
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN---- 200 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~---- 200 (574)
.++.+||.+|++.-+...++.+.+.... .+..+...+|+.....+...+.. +. ..|+|+|.
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~-------~~iiv~T~~~l~ 171 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDY-----MGASCHACIGGTNVRAEVQKLQM---EA-------PHIIVGTPGRVF 171 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGG-----SCCCEEECCCCTTHHHHHHHHTT---TC-------CSEEEECHHHHH
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcc-----cCceEEEEECCcchHHHHHHHhc---CC-------CCEEEECHHHHH
Confidence 5778999999999999888888774332 35667888888876655443321 22 57999994
Q ss_pred -cccc-cccCCCeEEEE
Q 008209 201 -IAET-SLTIDGIVYVI 215 (574)
Q Consensus 201 -iae~-gitip~v~~VI 215 (574)
.+.. .+...++.+||
T Consensus 172 ~~l~~~~~~~~~~~~vV 188 (414)
T 3eiq_A 172 DMLNRRYLSPKYIKMFV 188 (414)
T ss_dssp HHHHHTSSCSTTCCEEE
T ss_pred HHHHcCCcccccCcEEE
Confidence 2222 34556666655
No 140
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=38.92 E-value=27 Score=31.26 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=23.9
Q ss_pred CccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCC
Q 008209 31 RYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 74 (574)
Q Consensus 31 ~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~ 74 (574)
++++|+|||+|- ++.+ ++..++.+... +..+++..-+.|
T Consensus 76 ~~dvviIDE~Q~--~~~~-~~~~l~~l~~~--~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 76 DTRGVFIDEVQF--FNPS-LFEVVKDLLDR--GIDVFCAGLDLT 114 (184)
T ss_dssp TEEEEEECCGGG--SCTT-HHHHHHHHHHT--TCEEEEEEESBC
T ss_pred CCCEEEEECccc--CCHH-HHHHHHHHHHC--CCCEEEEeeccc
Confidence 688999999996 2233 34455544433 677776544433
No 141
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=38.62 E-value=74 Score=30.93 Aligned_cols=60 Identities=18% Similarity=0.170 Sum_probs=44.6
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 200 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ 200 (574)
.++..+||.+|++.-+...++.+.+.... ....+..++|+....++...+.. .+|+|+|.
T Consensus 72 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~------------~~iiv~T~ 131 (367)
T 1hv8_A 72 NNGIEAIILTPTRELAIQVADEIESLKGN-----KNLKIAKIYGGKAIYPQIKALKN------------ANIVVGTP 131 (367)
T ss_dssp SSSCCEEEECSCHHHHHHHHHHHHHHHCS-----SCCCEEEECTTSCHHHHHHHHHT------------CSEEEECH
T ss_pred cCCCcEEEEcCCHHHHHHHHHHHHHHhCC-----CCceEEEEECCcchHHHHhhcCC------------CCEEEecH
Confidence 45778999999999999888888775432 35678889999887665544431 47899885
No 142
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=38.00 E-value=47 Score=37.19 Aligned_cols=59 Identities=10% Similarity=0.030 Sum_probs=40.3
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc
Q 008209 126 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 200 (574)
Q Consensus 126 ~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ 200 (574)
++.+||.+|++.-+....+.+.+.... .++.+..+||+.+...+...+.. + ..|||+|.
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~-----~~~~v~~~~g~~~~~~~~~~~~~---~--------~~Ivv~Tp 354 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFER-----QGYSVQGISGENFSNVSVEKVIE---D--------SDIIVVTP 354 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGG-----GTCCEEEECCC-----CHHHHHH---T--------CSEEEECH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhccc-----CCceEEEEeCCcchhhhHHHhhC---C--------CCEEEEch
Confidence 789999999999999888888875543 25778999999876654333221 1 47999984
No 143
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=37.72 E-value=22 Score=37.69 Aligned_cols=59 Identities=14% Similarity=0.095 Sum_probs=47.6
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc
Q 008209 126 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 200 (574)
Q Consensus 126 ~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ 200 (574)
.|.+||.+|++.-+....+.|.+ .++.+..+||+.+..++..++.....|. .+|+++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~---------~gi~~~~l~~~~~~~~~~~~~~~~~~~~-------~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQA---------NGVAAACLNSTQTREQQLEVMTGCRTGQ-------IRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHH---------TTCCEEEECTTSCHHHHHHHHHHHHHTC-------CSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHH---------cCCcEEEEeCCCCHHHHHHHHHHHhcCC-------CCEEEECH
Confidence 57899999999999888888875 3567888999999888877766665555 68888885
No 144
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=34.47 E-value=65 Score=30.97 Aligned_cols=58 Identities=22% Similarity=0.167 Sum_probs=43.5
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc
Q 008209 126 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 200 (574)
Q Consensus 126 ~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ 200 (574)
++.+||.+|++.-+...++.+.+... ..+..+..+||+.+..++...+.. ..|+|+|.
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~------------~~i~v~T~ 113 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGR-----YMDTKVAEVYGGMPYKAQINRVRN------------ADIVVATP 113 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTT-----TSCCCEEEECTTSCHHHHHHHHTT------------CSEEEECH
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhh-----hcCCcEEEEECCcchHHHHhhcCC------------CCEEEECH
Confidence 67899999999999998888876432 235678889999987766554432 36899884
No 145
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=34.27 E-value=45 Score=32.74 Aligned_cols=43 Identities=23% Similarity=0.512 Sum_probs=25.8
Q ss_pred CCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCC
Q 008209 29 LERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL 73 (574)
Q Consensus 29 L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl 73 (574)
..+..++||||+|. ++.+..-.+++.+-...++..+|+.|-.+
T Consensus 132 ~~~~~vlilDE~~~--L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANS--LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTS--SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccc--cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 44788999999996 66665444444433333455666665543
No 146
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=33.17 E-value=41 Score=28.44 Aligned_cols=41 Identities=12% Similarity=0.229 Sum_probs=22.3
Q ss_pred cEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHH
Q 008209 33 KVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAE 76 (574)
Q Consensus 33 ~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~ 76 (574)
++++|||+|. +..+..-.++..+.....+.++|+.|. .+.+
T Consensus 78 g~l~ldei~~--l~~~~q~~Ll~~l~~~~~~~~~I~~t~-~~~~ 118 (145)
T 3n70_A 78 GTLVLSHPEH--LTREQQYHLVQLQSQEHRPFRLIGIGD-TSLV 118 (145)
T ss_dssp SCEEEECGGG--SCHHHHHHHHHHHHSSSCSSCEEEEES-SCHH
T ss_pred cEEEEcChHH--CCHHHHHHHHHHHhhcCCCEEEEEECC-cCHH
Confidence 6899999996 333333333333323445677665443 3433
No 147
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=32.15 E-value=46 Score=38.71 Aligned_cols=62 Identities=16% Similarity=0.151 Sum_probs=47.1
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCe----EEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPV----KVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 200 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~----~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ 200 (574)
.++.+||.+|++.-+..+++.+.+.... .++ .+..+||+.+..+|....+.... ..|+|+|+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~-----~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~---------~~IlV~TP 163 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEK-----AGVGTENLIGYYHGRIPKREKENFMQNLRN---------FKIVITTT 163 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTT-----TCCSGGGSEEECCSSCCSHHHHHHHHSGGG---------CSEEEEEH
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhh-----cCCCccceEEEEeCCCChhhHHHHHhhccC---------CCEEEEcH
Confidence 5789999999999999999988875432 234 78999999998886555444433 36999996
No 148
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=31.30 E-value=14 Score=40.22 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=25.4
Q ss_pred CCCeEEEchHHHHHHHhcCC------CCCCccEEEEecCC
Q 008209 8 LLGGRYLTDGMLLREAMTDP------LLERYKVIVLDEAH 41 (574)
Q Consensus 8 ~~~I~~~T~g~Ll~~l~~~~------~L~~~~~vIiDE~H 41 (574)
..+|+|+..-+|+....... ...+-.+|||||||
T Consensus 175 ~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAH 214 (620)
T 4a15_A 175 DADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAH 214 (620)
T ss_dssp GCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGG
T ss_pred cCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCC
Confidence 57999999988877553221 23467899999999
No 149
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=30.85 E-value=1.6e+02 Score=23.62 Aligned_cols=50 Identities=8% Similarity=0.147 Sum_probs=33.4
Q ss_pred CCccEEEEecCCCCCcchHHHHHHHHHHHh--hCCCccEEEEccCCCHHHHHhhh
Q 008209 30 ERYKVIVLDEAHERTLATDVLFGLLKEVLK--NRPDLKLVVMSATLEAEKFQGYF 82 (574)
Q Consensus 30 ~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~--~~~~~klvlmSATl~~~~~~~~f 82 (574)
..+++||+|--- ....-.+.+++.+.. ..+++++|++|+..+.+...+.+
T Consensus 49 ~~~dlvi~D~~l---~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~ 100 (140)
T 3lua_A 49 DSITLIIMDIAF---PVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAAL 100 (140)
T ss_dssp CCCSEEEECSCS---SSHHHHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHH
T ss_pred CCCcEEEEeCCC---CCCCcHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHH
Confidence 468899998432 102223555666655 56789999999998877666554
No 150
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=29.90 E-value=69 Score=32.42 Aligned_cols=75 Identities=16% Similarity=0.345 Sum_probs=51.8
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEeccc-c
Q 008209 124 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNI-A 202 (574)
Q Consensus 124 ~~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~i-a 202 (574)
..++.+||.+|++.-+....+.+.+... .+...+..+||+....++...+.. ..|+|+|.= +
T Consensus 50 ~~~~~~liv~P~~~L~~q~~~~~~~~~~-----~~~~~v~~~~g~~~~~~~~~~~~~------------~~ivv~T~~~l 112 (494)
T 1wp9_A 50 KYGGKVLMLAPTKPLVLQHAESFRRLFN-----LPPEKIVALTGEKSPEERSKAWAR------------AKVIVATPQTI 112 (494)
T ss_dssp HSCSCEEEECSSHHHHHHHHHHHHHHBC-----SCGGGEEEECSCSCHHHHHHHHHH------------CSEEEECHHHH
T ss_pred cCCCeEEEEECCHHHHHHHHHHHHHHhC-----cchhheEEeeCCcchhhhhhhccC------------CCEEEecHHHH
Confidence 3578999999999999888888876431 134478899999988876655432 468888842 1
Q ss_pred c-----ccccCCCeEEEE
Q 008209 203 E-----TSLTIDGIVYVI 215 (574)
Q Consensus 203 e-----~gitip~v~~VI 215 (574)
. ..+...++.+||
T Consensus 113 ~~~~~~~~~~~~~~~~vI 130 (494)
T 1wp9_A 113 ENDLLAGRISLEDVSLIV 130 (494)
T ss_dssp HHHHHTTSCCTTSCSEEE
T ss_pred HHHHhcCCcchhhceEEE
Confidence 1 134556666555
No 151
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=29.57 E-value=68 Score=31.07 Aligned_cols=44 Identities=18% Similarity=0.309 Sum_probs=24.8
Q ss_pred cCCCCCCccEEEEecCCCCCcc-hHHHHHHHHHHHhh-CCCccEEEEcc
Q 008209 25 TDPLLERYKVIVLDEAHERTLA-TDVLFGLLKEVLKN-RPDLKLVVMSA 71 (574)
Q Consensus 25 ~~~~L~~~~~vIiDE~HeR~~~-~d~ll~~lk~~~~~-~~~~klvlmSA 71 (574)
..+...+.++|||||+|. +. .+. ...+...+.. .++.++|+.+-
T Consensus 99 ~~~~~~~~~vliiDEi~~--l~~~~~-~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 99 AASFDGRQKVIVIDEFDR--SGLAES-QRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp BCCCSSCEEEEEEESCCC--GGGHHH-HHHHHHHHHHHGGGCEEEEEES
T ss_pred hcccCCCCeEEEEECCcc--cCcHHH-HHHHHHHHHhCCCCcEEEEEeC
Confidence 345566899999999995 33 222 2233333332 23566666443
No 152
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=28.25 E-value=56 Score=33.12 Aligned_cols=50 Identities=8% Similarity=0.167 Sum_probs=26.9
Q ss_pred CccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEE-EccCCCHHHHHhhh
Q 008209 31 RYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVV-MSATLEAEKFQGYF 82 (574)
Q Consensus 31 ~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvl-mSATl~~~~~~~~f 82 (574)
+.+++|+||+|.-. +.+-++..++..+..+++.++++ .+++-. ..|-+.+
T Consensus 273 ~~~~viiDE~a~~~-~~~el~~al~~~ls~~~~~kiiiiSTP~g~-n~fy~l~ 323 (385)
T 2o0j_A 273 SFAMIYIEDCAFIP-NFHDSWLAIQPVISSGRRSKIIITTTPNGL-NHFYDIW 323 (385)
T ss_dssp CCSEEEEESGGGST-THHHHHHHHHHHHHSTTCCEEEEEECCCSS-SHHHHHH
T ss_pred CCCEEEechhhhcC-CCHHHHHHHHHHhhcCCCCcEEEEeCCCCc-hhHHHHH
Confidence 45789999999632 21333444455554444555444 445444 3444443
No 153
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=27.91 E-value=2.3e+02 Score=22.64 Aligned_cols=64 Identities=16% Similarity=0.269 Sum_probs=38.7
Q ss_pred CeEEEchHH-HHHHHhcCCCCCCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhh
Q 008209 10 GGRYLTDGM-LLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYF 82 (574)
Q Consensus 10 ~I~~~T~g~-Ll~~l~~~~~L~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f 82 (574)
++..++++- .++.+.. ..+++||+|- -. ..+ .+.+++.+....+++++|++|+..+.+...+.+
T Consensus 30 ~v~~~~~~~~a~~~l~~----~~~dlvi~d~-~~---~~~-g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~ 94 (142)
T 2qxy_A 30 NVIWAKNEQEAFTFLRR----EKIDLVFVDV-FE---GEE-SLNLIRRIREEFPDTKVAVLSAYVDKDLIINSV 94 (142)
T ss_dssp EEEEESSHHHHHHHHTT----SCCSEEEEEC-TT---THH-HHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHH
T ss_pred EEEEECCHHHHHHHHhc----cCCCEEEEeC-CC---CCc-HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH
Confidence 344454443 3333333 3579999997 31 222 245555555567789999999988766555444
No 154
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=27.55 E-value=1.3e+02 Score=33.77 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=44.8
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 200 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ 200 (574)
.+..++|..|+++=+.+.++.+...... .++.+..++|+++..+|..... ..|+++||
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~-----lgl~v~~i~gg~~~~~r~~~~~-------------~dIv~gTp 180 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEF-----LGLTVGLNLNSMSKDEKREAYA-------------ADITYSTN 180 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHH-----TTCCEEECCTTSCHHHHHHHHH-------------SSEEEEEH
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhh-----cCCeEEEEeCCCCHHHHHHhcC-------------CCEEEECc
Confidence 4568999999999888887777664332 3678999999999887766532 47999997
No 155
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=27.44 E-value=1.6e+02 Score=24.24 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=32.3
Q ss_pred CccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhh
Q 008209 31 RYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYF 82 (574)
Q Consensus 31 ~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f 82 (574)
.+++||+|---. +.+. +.+++.+....+++++|++|+..+.+...+.+
T Consensus 66 ~~dlii~D~~l~-~~~g---~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~ 113 (150)
T 4e7p_A 66 SVDIAILDVEMP-VKTG---LEVLEWIRSEKLETKVVVVTTFKRAGYFERAV 113 (150)
T ss_dssp CCSEEEECSSCS-SSCH---HHHHHHHHHTTCSCEEEEEESCCCHHHHHHHH
T ss_pred CCCEEEEeCCCC-CCcH---HHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHH
Confidence 478999985432 2222 34455555567889999999998877666655
No 156
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=27.21 E-value=65 Score=28.51 Aligned_cols=40 Identities=23% Similarity=0.414 Sum_probs=23.1
Q ss_pred CCccEEEEecCCCCCcchHHHHHHHHHHHhh-CCCccEEEEccC
Q 008209 30 ERYKVIVLDEAHERTLATDVLFGLLKEVLKN-RPDLKLVVMSAT 72 (574)
Q Consensus 30 ~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~-~~~~klvlmSAT 72 (574)
.+..+|||||+|. +..+. ...+..++.. ..+.++|+.+..
T Consensus 101 ~~~~vliiDe~~~--l~~~~-~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADA--LTADA-QAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGG--SCHHH-HHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhh--cCHHH-HHHHHHHHHhcCCCCeEEEEeCC
Confidence 5678999999995 22222 2333334433 345666666543
No 157
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=27.13 E-value=1.2e+02 Score=34.03 Aligned_cols=58 Identities=10% Similarity=0.071 Sum_probs=44.4
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc
Q 008209 125 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 200 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ 200 (574)
.+.+++|.+||++=+.+.++.+...... .++.+..++|+++..++..... ..|+++|+
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~-----lgl~v~~i~GG~~~~~r~~~~~-------------~dIvvgTp 171 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEF-----LGLTVGINLPGMPAPAKREAYA-------------ADITYGTN 171 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHH-----TTCCEEECCTTCCHHHHHHHHH-------------SSEEEEEH
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHh-----cCCeEEEEeCCCCHHHHHHhcC-------------CCEEEECC
Confidence 4568999999999888887777664433 3578999999999876665431 47999997
No 158
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=26.98 E-value=89 Score=29.90 Aligned_cols=38 Identities=24% Similarity=0.504 Sum_probs=22.3
Q ss_pred CCccEEEEecCCCCCcchHHHHHHHHHHHhh-CCCccEEEEc
Q 008209 30 ERYKVIVLDEAHERTLATDVLFGLLKEVLKN-RPDLKLVVMS 70 (574)
Q Consensus 30 ~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~-~~~~klvlmS 70 (574)
.+..+|||||+|. +..+.. ..+...+.. .++.++|+.+
T Consensus 109 ~~~~vliiDe~~~--l~~~~~-~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADA--LTQDAQ-QALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGG--SCHHHH-HHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCc--CCHHHH-HHHHHHHHhcCCCCeEEEEe
Confidence 6789999999995 333332 233334443 3456666654
No 159
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=26.23 E-value=1.9e+02 Score=22.71 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=29.0
Q ss_pred CccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhh
Q 008209 31 RYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYF 82 (574)
Q Consensus 31 ~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f 82 (574)
.+++||+|---. +.+ .+.+++.+.+..+++++|++|+..+.+...+.+
T Consensus 51 ~~dlvi~d~~l~-~~~---g~~~~~~l~~~~~~~~ii~~t~~~~~~~~~~~~ 98 (130)
T 3eod_A 51 TPDLMICDIAMP-RMN---GLKLLEHIRNRGDQTPVLVISATENMADIAKAL 98 (130)
T ss_dssp CCSEEEECCC---------CHHHHHHHHHTTCCCCEEEEECCCCHHHHHHHH
T ss_pred CCCEEEEecCCC-CCC---HHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHH
Confidence 478888884321 122 234445554566788999999988776655544
No 160
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=25.78 E-value=63 Score=36.96 Aligned_cols=59 Identities=10% Similarity=0.030 Sum_probs=39.8
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc
Q 008209 126 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 200 (574)
Q Consensus 126 ~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ 200 (574)
++.+||.+|++.-+....+.+.+.... .++.+..+||+.+...+...+.. + ..|||+|.
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~-----~~~~v~~~~G~~~~~~~~~~~~~---~--------~~IvI~Tp 354 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFER-----QGYSVQGISGENFSNVSVEKVIE---D--------SDIIVVTP 354 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHT-----TTCCEEEECCC-----CCHHHHH---H--------CSEEEECH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcc-----cCceEEEEECCcchhhHHHHhcc---C--------CCEEEecH
Confidence 788999999999998888888775542 26789999999876654333221 1 47888884
No 161
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=24.86 E-value=56 Score=34.44 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=25.6
Q ss_pred CCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCC
Q 008209 30 ERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 74 (574)
Q Consensus 30 ~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~ 74 (574)
.+..+|||||+|.-.....-.+..+..++.. .+.++|+.+++..
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-~~~~iIli~~~~~ 190 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-TSTPLILICNERN 190 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-CSSCEEEEESCTT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh-cCCCEEEEEcCCC
Confidence 4567999999994322211112333333333 4667888888864
No 162
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=24.59 E-value=58 Score=31.55 Aligned_cols=40 Identities=20% Similarity=0.384 Sum_probs=25.7
Q ss_pred cEEEEecCCCCCc----chHHHHHHHHHHHhhCCCccEEEEccC
Q 008209 33 KVIVLDEAHERTL----ATDVLFGLLKEVLKNRPDLKLVVMSAT 72 (574)
Q Consensus 33 ~~vIiDE~HeR~~----~~d~ll~~lk~~~~~~~~~klvlmSAT 72 (574)
-+|||||+|.=.- ...-.+..++.+....+++++|+.+..
T Consensus 130 ~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~ 173 (350)
T 2qen_A 130 FIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSE 173 (350)
T ss_dssp EEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred EEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCc
Confidence 4899999995111 123456667776665567888886543
No 163
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=23.99 E-value=95 Score=25.98 Aligned_cols=38 Identities=11% Similarity=0.174 Sum_probs=20.9
Q ss_pred ccEEEEecCCCCCcchHHHHHHHHHHHhh-CCCccEEEEcc
Q 008209 32 YKVIVLDEAHERTLATDVLFGLLKEVLKN-RPDLKLVVMSA 71 (574)
Q Consensus 32 ~~~vIiDE~HeR~~~~d~ll~~lk~~~~~-~~~~klvlmSA 71 (574)
-++++|||+|.- ..+..-.+++.+-.. ..+.++|+.|.
T Consensus 76 ~~~l~lDei~~l--~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 76 GGVLYVGDIAQY--SRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp TSEEEEEECTTC--CHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred CCeEEEeChHHC--CHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 478999999963 333333333222222 34577766554
No 164
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=23.94 E-value=75 Score=28.60 Aligned_cols=35 Identities=11% Similarity=0.359 Sum_probs=22.7
Q ss_pred CccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEc
Q 008209 31 RYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMS 70 (574)
Q Consensus 31 ~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmS 70 (574)
++++|+|||++- ++.+. +..++.+... +..+|+..
T Consensus 81 ~~dvViIDEaqf--l~~~~-v~~l~~l~~~--~~~Vi~~G 115 (191)
T 1xx6_A 81 DTEVIAIDEVQF--FDDEI-VEIVNKIAES--GRRVICAG 115 (191)
T ss_dssp TCSEEEECSGGG--SCTHH-HHHHHHHHHT--TCEEEEEE
T ss_pred cCCEEEEECCCC--CCHHH-HHHHHHHHhC--CCEEEEEe
Confidence 589999999996 33343 5556655432 56666653
No 165
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=23.20 E-value=73 Score=29.39 Aligned_cols=34 Identities=18% Similarity=0.395 Sum_probs=21.4
Q ss_pred CccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEE
Q 008209 31 RYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVM 69 (574)
Q Consensus 31 ~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlm 69 (574)
++++|+|||++- +..|.+ ..++.+.. .+..+|+.
T Consensus 101 ~~dvViIDEaQF--~~~~~V-~~l~~l~~--~~~~Vi~~ 134 (214)
T 2j9r_A 101 EMDVIAIDEVQF--FDGDIV-EVVQVLAN--RGYRVIVA 134 (214)
T ss_dssp SCCEEEECCGGG--SCTTHH-HHHHHHHH--TTCEEEEE
T ss_pred CCCEEEEECccc--CCHHHH-HHHHHHhh--CCCEEEEE
Confidence 599999999996 333433 55555433 25666554
No 166
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=23.18 E-value=53 Score=35.50 Aligned_cols=37 Identities=16% Similarity=0.324 Sum_probs=24.0
Q ss_pred CccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccC
Q 008209 31 RYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSAT 72 (574)
Q Consensus 31 ~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSAT 72 (574)
++++|||||++ .++.+.+-.+++. ..++.|+|++.=.
T Consensus 262 ~~d~lIIDEAs--ml~~~~~~~Ll~~---l~~~~~liLvGD~ 298 (608)
T 1w36_D 262 HLDVLVVDEAS--MIDLPMMSRLIDA---LPDHARVIFLGDR 298 (608)
T ss_dssp SCSEEEECSGG--GCBHHHHHHHHHT---CCTTCEEEEEECT
T ss_pred CCCEEEEechh--hCCHHHHHHHHHh---CCCCCEEEEEcch
Confidence 68899999999 4665544444432 3456777776543
No 167
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=23.12 E-value=2.9e+02 Score=22.16 Aligned_cols=50 Identities=10% Similarity=0.294 Sum_probs=34.2
Q ss_pred CCccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhhC
Q 008209 30 ERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFY 83 (574)
Q Consensus 30 ~~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f~ 83 (574)
..+++||+|---. ..+ .+.+++.+....+++++|++|+..+.+...+.+.
T Consensus 66 ~~~dlvi~D~~l~---~~~-g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~ 115 (146)
T 4dad_A 66 DAFDILMIDGAAL---DTA-ELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMR 115 (146)
T ss_dssp TTCSEEEEECTTC---CHH-HHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHT
T ss_pred CCCCEEEEeCCCC---Ccc-HHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHH
Confidence 4578899985432 222 3455555555678899999999988777766653
No 168
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=22.54 E-value=92 Score=33.84 Aligned_cols=59 Identities=12% Similarity=0.121 Sum_probs=41.4
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecc
Q 008209 126 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 200 (574)
Q Consensus 126 ~g~iLVFl~~~~ei~~~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~q~~v~~~~~~g~~~~~~~~~kvivaT~ 200 (574)
++.+||.+|++.-+....+.+.+... ..++.+..++|+.+...+...+.. + .+|+|+|+
T Consensus 61 ~~~~lvl~Pt~~L~~Q~~~~~~~~~~-----~~~~~v~~~~g~~~~~~~~~~~~~---~--------~~Iiv~Tp 119 (696)
T 2ykg_A 61 KGKVVFFANQIPVYEQNKSVFSKYFE-----RHGYRVTGISGATAENVPVEQIVE---N--------NDIIILTP 119 (696)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTT-----TTTCCEEEECSSSCSSSCHHHHHH---T--------CSEEEECH
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHhc-----cCCceEEEEeCCccccccHHHhcc---C--------CCEEEECH
Confidence 38999999999988888888876442 136788999999865443322221 1 47899985
No 169
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=22.38 E-value=1.1e+02 Score=27.02 Aligned_cols=42 Identities=12% Similarity=0.138 Sum_probs=27.1
Q ss_pred CCCCEEEEcCCHHHHHH-HHHHHHHHHhhcCCCCCCeEEEEcCCCCCHH
Q 008209 125 PSGDILVFLTGEEEIED-ACRKITKEITNMGDQVGPVKVVPLYSTLPPA 172 (574)
Q Consensus 125 ~~g~iLVFl~~~~ei~~-~~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~ 172 (574)
.++.+||.+|++.-++. ..+.+.+... ..+.+..++|+....
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~------~~~~v~~~~g~~~~~ 123 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLK------KWYRVIGLSGDTQLK 123 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHT------TTSCEEECCC---CC
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhc------cCceEEEEeCCcccc
Confidence 47899999999988777 5555554321 246788888876543
No 170
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=21.76 E-value=92 Score=26.51 Aligned_cols=31 Identities=10% Similarity=0.188 Sum_probs=19.4
Q ss_pred CCCccEEEEecCCCCCc-chHHHHHHHHHHHh
Q 008209 29 LERYKVIVLDEAHERTL-ATDVLFGLLKEVLK 59 (574)
Q Consensus 29 L~~~~~vIiDE~HeR~~-~~d~ll~~lk~~~~ 59 (574)
+.+.+++||||++.-.. ..+.++.++.....
T Consensus 81 ~~~~~lLilDE~~~~~~~~~~~l~~li~~~~~ 112 (149)
T 2kjq_A 81 AFEAEYLAVDQVEKLGNEEQALLFSIFNRFRN 112 (149)
T ss_dssp GGGCSEEEEESTTCCCSHHHHHHHHHHHHHHH
T ss_pred HhCCCEEEEeCccccChHHHHHHHHHHHHHHH
Confidence 45678999999995222 23455566555443
No 171
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=21.46 E-value=36 Score=30.39 Aligned_cols=71 Identities=14% Similarity=0.259 Sum_probs=35.6
Q ss_pred CCeEEEchHHHHHHHhcC---C-------CCCCccEEEEecCCCCCcc---hH-HHHHHHHHHHhhCCCccEEEEccCCC
Q 008209 9 LGGRYLTDGMLLREAMTD---P-------LLERYKVIVLDEAHERTLA---TD-VLFGLLKEVLKNRPDLKLVVMSATLE 74 (574)
Q Consensus 9 ~~I~~~T~g~Ll~~l~~~---~-------~L~~~~~vIiDE~HeR~~~---~d-~ll~~lk~~~~~~~~~klvlmSATl~ 74 (574)
..++|.+..-++..+... . .+.+.++|||||++.-... .+ ++..++..... ...+ ++++...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~--~~~~-~i~tsn~~ 159 (202)
T 2w58_A 83 VSSLIVYVPELFRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMF--ENLP-TFFTSNFD 159 (202)
T ss_dssp CCEEEEEHHHHHHHHHHC---CCCHHHHHHHHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHH--TTCC-EEEEESSC
T ss_pred CeEEEEEhHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHh--CCCC-EEEEcCCC
Confidence 456666655555544321 1 1245679999999742222 22 22223333211 2334 55555667
Q ss_pred HHHHHhhh
Q 008209 75 AEKFQGYF 82 (574)
Q Consensus 75 ~~~~~~~f 82 (574)
.+.+...+
T Consensus 160 ~~~l~~~~ 167 (202)
T 2w58_A 160 MQQLAHHL 167 (202)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHH
Confidence 77777665
No 172
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=21.39 E-value=1.7e+02 Score=23.29 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=29.8
Q ss_pred CccEEEEecCCCC----CcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhh
Q 008209 31 RYKVIVLDEAHER----TLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYF 82 (574)
Q Consensus 31 ~~~~vIiDE~HeR----~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f 82 (574)
.+++||+|---.- +.+. +.+++.+....+++++|++|+..+.+...+.+
T Consensus 47 ~~dlvi~d~~~~~~~~~~~~g---~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~ 99 (140)
T 2qr3_A 47 NPEVVLLDMNFTSGINNGNEG---LFWLHEIKRQYRDLPVVLFTAYADIDLAVRGI 99 (140)
T ss_dssp CEEEEEEETTTTC-----CCH---HHHHHHHHHHCTTCCEEEEEEGGGHHHHHHHH
T ss_pred CCCEEEEeCCcCCCCCCCccH---HHHHHHHHhhCcCCCEEEEECCCCHHHHHHHH
Confidence 4788999854310 2222 34444444456789999999887665555544
No 173
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=21.22 E-value=3.1e+02 Score=21.74 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=32.3
Q ss_pred CccEEEEecCCCCCcch-HHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhh
Q 008209 31 RYKVIVLDEAHERTLAT-DVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYF 82 (574)
Q Consensus 31 ~~~~vIiDE~HeR~~~~-d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f 82 (574)
.+++||+|---. .. .-.+.+++.+....+++++|++|+..+.+...+.+
T Consensus 50 ~~dlvi~D~~l~---~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~ 99 (136)
T 3kto_A 50 DAIGMIIEAHLE---DKKDSGIELLETLVKRGFHLPTIVMASSSDIPTAVRAM 99 (136)
T ss_dssp TEEEEEEETTGG---GBTTHHHHHHHHHHHTTCCCCEEEEESSCCHHHHHHHH
T ss_pred CCCEEEEeCcCC---CCCccHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHH
Confidence 578888884321 20 12345566665667899999999998876665554
No 174
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=21.16 E-value=1.1e+02 Score=25.45 Aligned_cols=48 Identities=8% Similarity=0.214 Sum_probs=31.3
Q ss_pred CccEEEEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEccCCCHHHHHhhh
Q 008209 31 RYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYF 82 (574)
Q Consensus 31 ~~~~vIiDE~HeR~~~~d~ll~~lk~~~~~~~~~klvlmSATl~~~~~~~~f 82 (574)
.+++||+|---. +.+. +.+++.+....+++++|++|+..+.+...+.+
T Consensus 83 ~~dliilD~~l~-~~~g---~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~ 130 (157)
T 3hzh_A 83 NIDIVTLXITMP-KMDG---ITCLSNIMEFDKNARVIMISALGKEQLVKDCL 130 (157)
T ss_dssp GCCEEEECSSCS-SSCH---HHHHHHHHHHCTTCCEEEEESCCCHHHHHHHH
T ss_pred CCCEEEEeccCC-CccH---HHHHHHHHhhCCCCcEEEEeccCcHHHHHHHH
Confidence 467888885432 2232 34455555566889999999988877666555
No 175
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=20.63 E-value=43 Score=23.29 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHcCCccCCCCcChh
Q 008209 312 ETLMRALEVLNYLGALDDDGNLTEM 336 (574)
Q Consensus 312 ~~l~~al~~L~~lgald~~~~lT~l 336 (574)
..+..|+..+..+|+=|+.|.||.+
T Consensus 8 ~rl~~al~qMl~MGF~negGWLt~L 32 (52)
T 1q02_A 8 PRLIESLSQMLSMGFSDEGGWLTRL 32 (52)
T ss_dssp HHHHHHHHHHHTTTCCCTTSHHHHH
T ss_pred hHHHHHHHHHHHcCCCccccHHHHH
Confidence 4588999999999999988877753
Done!