BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008210
         (574 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2D09|A Chain A, A Role For Active Site Water Molecules And Hydroxyl Groups
           Of Substrate For Oxygen Activation In Cytochrome P450
           158a2
          Length = 407

 Score = 28.9 bits (63), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 225 TTILDHMIPLSASISYASXXXXXXXXXXXXXXXVKMTICRKRTSESGILDQSVGSSDSVV 284
           T +  H IP   ++ +                     + R R    G+LD+ V   D+++
Sbjct: 80  TRLAPHFIPARGAVGFLDPPDHTRLRRSVAAAFTARGVERVRERSRGMLDELV---DAML 136

Query: 285 RAGGDADKSEPLLDP 299
           RAG  AD +E +L P
Sbjct: 137 RAGPPADLTEAVLSP 151


>pdb|2D0E|A Chain A, Substrate Assited In Oxygen Activation In Cytochrome P450
           158a2
          Length = 407

 Score = 28.9 bits (63), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 225 TTILDHMIPLSASISYASXXXXXXXXXXXXXXXVKMTICRKRTSESGILDQSVGSSDSVV 284
           T +  H IP   ++ +                     + R R    G+LD+ V   D+++
Sbjct: 80  TRLAPHFIPARGAVGFLDPPDHTRLRRSVAAAFTARGVERVRERSRGMLDELV---DAML 136

Query: 285 RAGGDADKSEPLLDP 299
           RAG  AD +E +L P
Sbjct: 137 RAGPPADLTEAVLSP 151


>pdb|1T93|A Chain A, Evidence For Multiple Substrate Recognition And Molecular
           Mechanism Of C-C Reaction By Cytochrome P450 Cyp158a2
           From Streptomyces Coelicolor A3(2)
          Length = 406

 Score = 28.9 bits (63), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 225 TTILDHMIPLSASISYASXXXXXXXXXXXXXXXVKMTICRKRTSESGILDQSVGSSDSVV 284
           T +  H IP   ++ +                     + R R    G+LD+ V   D+++
Sbjct: 80  TRLAPHFIPARGAVGFLDPPDHTRLRRSVAAAFTARGVERVRERSRGMLDELV---DAML 136

Query: 285 RAGGDADKSEPLLDP 299
           RAG  AD +E +L P
Sbjct: 137 RAGPPADLTEAVLSP 151


>pdb|1S1F|A Chain A, Crystal Structure Of Streptomyces Coelicolor A3(2)
           Cyp158a2 From Antibiotic Biosynthetic Pathways
          Length = 406

 Score = 28.9 bits (63), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 225 TTILDHMIPLSASISYASXXXXXXXXXXXXXXXVKMTICRKRTSESGILDQSVGSSDSVV 284
           T +  H IP   ++ +                     + R R    G+LD+ V   D+++
Sbjct: 80  TRLAPHFIPARGAVGFLDPPDHTRLRRSVAAAFTARGVERVRERSRGMLDELV---DAML 136

Query: 285 RAGGDADKSEPLLDP 299
           RAG  AD +E +L P
Sbjct: 137 RAGPPADLTEAVLSP 151


>pdb|1SE6|A Chain A, Crystal Structure Of Streptomyces Coelicolor A3(2)
           Cyp158a2 From Antibiotic Biosynthetic Pathways
 pdb|1SE6|B Chain B, Crystal Structure Of Streptomyces Coelicolor A3(2)
           Cyp158a2 From Antibiotic Biosynthetic Pathways
          Length = 406

 Score = 28.9 bits (63), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 225 TTILDHMIPLSASISYASXXXXXXXXXXXXXXXVKMTICRKRTSESGILDQSVGSSDSVV 284
           T +  H IP   ++ +                     + R R    G+LD+ V   D+++
Sbjct: 80  TRLAPHFIPARGAVGFLDPPDHTRLRRSVAAAFTARGVERVRERSRGMLDELV---DAML 136

Query: 285 RAGGDADKSEPLLDP 299
           RAG  AD +E +L P
Sbjct: 137 RAGPPADLTEAVLSP 151


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,518,910
Number of Sequences: 62578
Number of extensions: 528073
Number of successful extensions: 931
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 931
Number of HSP's gapped (non-prelim): 5
length of query: 574
length of database: 14,973,337
effective HSP length: 104
effective length of query: 470
effective length of database: 8,465,225
effective search space: 3978655750
effective search space used: 3978655750
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)