Query 008210
Match_columns 574
No_of_seqs 165 out of 2071
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 20:47:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008210.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008210hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 1.1E-31 3.9E-36 283.6 26.5 398 9-552 24-436 (451)
2 3o7q_A L-fucose-proton symport 100.0 3.2E-30 1.1E-34 271.6 32.9 354 9-505 22-408 (438)
3 4gc0_A D-xylose-proton symport 100.0 3.7E-28 1.3E-32 259.8 26.6 403 31-558 31-471 (491)
4 4aps_A DI-OR tripeptide H+ sym 100.0 9.7E-27 3.3E-31 248.9 29.8 413 34-554 36-476 (491)
5 2gfp_A EMRD, multidrug resista 99.9 1.3E-26 4.5E-31 239.0 15.3 327 28-504 16-352 (375)
6 2cfq_A Lactose permease; trans 99.9 1.2E-24 4.2E-29 227.9 12.5 362 31-551 27-401 (417)
7 2xut_A Proton/peptide symporte 99.9 2.9E-22 9.8E-27 216.1 26.3 151 33-189 34-196 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.4 2.3E-12 7.9E-17 135.2 12.4 175 350-552 27-209 (451)
9 4aps_A DI-OR tripeptide H+ sym 99.3 1.2E-11 4E-16 131.6 15.2 173 352-551 14-198 (491)
10 3o7q_A L-fucose-proton symport 99.3 1.4E-11 4.8E-16 128.8 13.6 127 370-502 45-177 (438)
11 2xut_A Proton/peptide symporte 99.2 5.2E-11 1.8E-15 127.7 11.9 168 352-546 13-195 (524)
12 2gfp_A EMRD, multidrug resista 99.2 1.2E-11 4.1E-16 126.7 6.2 148 370-544 19-169 (375)
13 4gc0_A D-xylose-proton symport 98.8 4.9E-08 1.7E-12 103.4 14.1 112 387-504 58-188 (491)
14 2cfq_A Lactose permease; trans 98.7 4.6E-08 1.6E-12 101.6 9.5 135 47-188 259-396 (417)
15 2g9p_A Antimicrobial peptide l 26.8 11 0.00038 20.3 -0.3 14 65-78 2-15 (26)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=1.1e-31 Score=283.61 Aligned_cols=398 Identities=12% Similarity=0.072 Sum_probs=280.5
Q ss_pred cCcHHHHHHHHHHHHhhhc-cchhhcchHHHHhhhCCCHHHHHHHHHHHHhhhhc-cccchhccccCCChHHHHHHHHHH
Q 008210 9 RPPWVGLGAAVWVQIAAGN-AYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLAC 86 (574)
Q Consensus 9 ~~~w~~~~~~~l~~~~~g~-~~~~~~~~~~l~~~l~~s~~~~~~i~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~~~ 86 (574)
+++|..+....+..+..+. .+.++.+.|.+.+++ .+..+.+++.+...++..+ +++.|+++||+|||+++.++.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence 3456666666655555544 667788889999999 9999999987777777765 999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCChhHHHHHHHHHHHHhhhHhhhhHHHHHHHhhCC-CCcchHHHHHHhhhhhHHHHHHHHHHHhc
Q 008210 87 FFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLL 165 (574)
Q Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~fp-~~rg~a~gi~~~~~~~g~~i~~~i~~~l~ 165 (574)
.++++++.+.... . ++++.+++.|++.|++.+..+++...++.+++| ++|++++++...+.++|.++++.+...+.
T Consensus 103 ~~~~~~~~~~~~~-~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 179 (451)
T 1pw4_A 103 AAVMLFMGFVPWA-T--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 179 (451)
T ss_dssp HHHHHHHHHCHHH-H--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHhhhhc-c--ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9997775441000 1 357889999999999999999999999999998 68999999999999999999988887765
Q ss_pred cCCh-hHHHHHHHHHHHHHHHHH-HHhcccCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHH
Q 008210 166 HNSS-SKLLLVLAVGVPAVCLVM-MYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASL 243 (574)
Q Consensus 166 ~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (574)
...+ |++.+.+..++.++..+. .+.+++.+++...
T Consensus 180 ~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------- 216 (451)
T 1pw4_A 180 AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGL------------------------------------------- 216 (451)
T ss_dssp HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCC-------------------------------------------
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCC-------------------------------------------
Confidence 4333 555544444333332222 2222211110000
Q ss_pred HHHHHHHhhhhcccccchhcccCCcccccccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHh
Q 008210 244 FIMIILLMAPLAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGSFRDNDDVSEVALLLA 323 (574)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (574)
++++ +.+. +.+.+
T Consensus 217 -----------------------~~~~---------------------~~~~-----------------~~~~~------ 229 (451)
T 1pw4_A 217 -----------------------PPIE---------------------EYKN-----------------DYPDD------ 229 (451)
T ss_dssp -----------------------CSCT---------------------TTCC-----------------C----------
T ss_pred -----------------------CChh---------------------hhcc-----------------ccccc------
Confidence 0000 0000 00000
Q ss_pred hhccchhhhccCCCCCCCccHHHhhhchhHHHHHHHHHhhcccceeeeccHHHHHHh-hCCc--hhhHHHHHHHHHHhhh
Q 008210 324 EGEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIA-QGVH--DTTILLSLFSFCNFVG 400 (574)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~--~~~~~~~~~~i~~~ig 400 (574)
.+.+. ++ +...++...++.+|+|.+|...+..++.......+..+.|.+.++ .|.+ +.+...+...++..++
T Consensus 230 -~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 304 (451)
T 1pw4_A 230 -YNEKA--EQ--ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPG 304 (451)
T ss_dssp --------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHH
T ss_pred -chhhh--hc--ccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 00000 00 001111124677889999988888777766666667788888877 6775 4567888899999999
Q ss_pred hhhhhhhhhhh--hccccCchhhHHHHHHHHH-HHHHHHHhc---CchHHHHHHHHHhhhccchhhhHHHHHHhhcCccc
Q 008210 401 RLGGGVVSEHF--VRKTIPRTIWMTCTQVIMI-ITYLLFASS---IDGTLYAATALLGICYGVQFSIMIPTVSELFGLEH 474 (574)
Q Consensus 401 ~~~~G~l~Dr~--g~r~~~~~~~~~~~~~~~~-i~~~~~~~~---~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~ 474 (574)
+++.|++.||+ +|| ..+..+..+.. ++++++... +.....+...+.|++.+...+....++.|.+|+++
T Consensus 305 ~~~~g~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (451)
T 1pw4_A 305 TLLCGWMSDKVFRGNR-----GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA 379 (451)
T ss_dssp HHHHHHHHHHTSTTCH-----HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH
T ss_pred HHHHHHHHHHHhcCCc-----hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh
Confidence 99999999999 887 44444444444 555555433 22345566777888888888888899999999999
Q ss_pred hhhhhhhhhhhhhh-HHHHHhHhHHHhhhhhhhhhhcccccccCCcccccCCccchhHHHHHHHHHHHHHHHHHHHhhh
Q 008210 475 FGLISNFLALGNPL-AAFLFSGLLAGYIYDNEAAKQQGFNLLTSNVVSCLGPNCFRITFFVLAGVCCVGSILSIILNIR 552 (574)
Q Consensus 475 ~g~~~g~~~~~~~l-g~~~~gp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (574)
+|+++|+.++...+ +.. ++|.+.|.+.|.. +|+..|++.+++.+++.++.+...++
T Consensus 380 ~g~~~~~~~~~~~~~g~~-~~~~~~g~l~~~~---------------------g~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 380 AGTAAGFTGLFGYLGGSV-AASAIVGYTVDFF---------------------GWDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHSS---------------------CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhc---------------------CcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999 988 8999999999983 58889998888888877666554443
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.98 E-value=3.2e-30 Score=271.56 Aligned_cols=354 Identities=13% Similarity=0.140 Sum_probs=258.5
Q ss_pred cCcHHHHHHHHHHHHhhhc-cchhhcchHHHHhhhCCCHHHHHHHHHHHHhhhhc-cccchhccccCCChHHHHHHHHHH
Q 008210 9 RPPWVGLGAAVWVQIAAGN-AYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLAC 86 (574)
Q Consensus 9 ~~~w~~~~~~~l~~~~~g~-~~~~~~~~~~l~~~l~~s~~~~~~i~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~~~ 86 (574)
+++|..+....+..+..+. .+.++.+.|.+++++|.+..+.+++.+...++..+ +++.|+++||+|||+++.++.++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 4455555555555544444 56778888999999999999999987777777755 999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCChhHHHHHHHHHHHHhhhHhhhhHHHHHHHhhCC-CCcchHHHHHHhhhhhHHHHHHHHHHHhc
Q 008210 87 FFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLL 165 (574)
Q Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~fp-~~rg~a~gi~~~~~~~g~~i~~~i~~~l~ 165 (574)
.+++++++.. ... ++++.+++.|++.|+|.|...++...++.+++| ++|++++++...+.++|..+++.+...+.
T Consensus 102 ~~~~~~~~~~--~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 102 ALGAALFWPA--AEI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHH--HHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHhc--ccc--ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9997765322 222 368999999999999999999999999999998 68999999999999999999999887775
Q ss_pred -cCCh-------------------------hHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCcchhhHHHHHHHHH
Q 008210 166 -HNSS-------------------------SKLLLVLAVGVPAVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLG 219 (574)
Q Consensus 166 -~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (574)
.... |++.+.....+.++..+..++.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~--------------------------- 230 (438)
T 3o7q_A 178 LSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTK--------------------------- 230 (438)
T ss_dssp HTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred hcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHc---------------------------
Confidence 3221 44433222211111111110000
Q ss_pred HHHHHHhhhcccCCCchhhhhhHHHHHHHHHhhhhcccccchhcccCCcccccccCCCCCCcccccCCCCCCCCCCCCCC
Q 008210 220 FFLLTTTILDHMIPLSASISYASLFIMIILLMAPLAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDP 299 (574)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (574)
.|++. ++++
T Consensus 231 ----------------------------------------------~p~~~---------------------~~~~---- 239 (438)
T 3o7q_A 231 ----------------------------------------------FPALQ---------------------SDNH---- 239 (438)
T ss_dssp ----------------------------------------------CCCCT---------------------TTCC----
T ss_pred ----------------------------------------------CCccc---------------------cccc----
Confidence 00000 0000
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHhhhccchhhhccCCCCCCCccHHHhhhchhHHHHHHHHHhhcccceeeeccHHHH-H
Q 008210 300 SSSTTDLGSFRDNDDVSEVALLLAEGEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQI-G 378 (574)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 378 (574)
++ + ++.....++++.+|+|.+|...+..++.......+..+.+.+ .
T Consensus 240 -------------~~-----------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (438)
T 3o7q_A 240 -------------SD-----------------A---KQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAV 286 (438)
T ss_dssp -------------CC-----------------S---STTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------cc-----------------c---cccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 00 0 000112345678899999998888777766666667788888 7
Q ss_pred Hhh-CCc--hhhHHHHHHHHHHhhhhhhhhhhhhhhhccccCchhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhc
Q 008210 379 IAQ-GVH--DTTILLSLFSFCNFVGRLGGGVVSEHFVRKTIPRTIWMTCTQVIMIITYLLFASSIDGTLYAATALLGICY 455 (574)
Q Consensus 379 ~~~-g~~--~~~~~~~~~~i~~~ig~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~l~g~~~ 455 (574)
++. |.+ +.+...+...++..+++++.|+++||++|| ..+..+.++..+++++....+.........+.|++.
T Consensus 287 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 361 (438)
T 3o7q_A 287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH-----KVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFM 361 (438)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH-----HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred hccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 774 775 567788888999999999999999999999 566666677777766666555444455567888888
Q ss_pred cchhhhHHHHHHhhcCccchhhhhhhhhhhhhhHHHHHhHhHHHhhhhhh
Q 008210 456 GVQFSIMIPTVSELFGLEHFGLISNFLALGNPLAAFLFSGLLAGYIYDNE 505 (574)
Q Consensus 456 g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~gp~l~g~l~~~~ 505 (574)
+..++....+..|.+|++ ++.+.++.. ...+++. ++|.+.|++.|..
T Consensus 362 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~-~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 362 SIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGG-IVTPVMGFVSDAA 408 (438)
T ss_dssp TTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHH-HHHHHHHHHHHHh
Confidence 888998889989999866 888888877 5668887 8999999999985
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.96 E-value=3.7e-28 Score=259.82 Aligned_cols=403 Identities=11% Similarity=-0.010 Sum_probs=248.6
Q ss_pred hhcchHHHHhhhCC--------CHHHHHHHHHHHHhhhhc-cccchhccccCCChHHHHHHHHHHHHHHHHHHHHHhhc-
Q 008210 31 FPLYSHSLKSVLGF--------NQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRT- 100 (574)
Q Consensus 31 ~~~~~~~l~~~l~~--------s~~~~~~i~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~- 100 (574)
.+...|.++++++. +..+.+++.+.+.+|..+ +++.|+++||+|||+++.++.+++.++.+++++...+.
T Consensus 31 i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~ 110 (491)
T 4gc0_A 31 ISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFT 110 (491)
T ss_dssp GGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTS
T ss_pred HHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34456777776632 344567777777888876 99999999999999999999999999977643211000
Q ss_pred ----------cCChhHHHHHHHHHHHHhhhHhhhhHHHHHHHhhCC-CCcchHHHHHHhhhhhHHHHHHHHHHHhcc---
Q 008210 101 ----------VESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLLH--- 166 (574)
Q Consensus 101 ----------~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~fp-~~rg~a~gi~~~~~~~g~~i~~~i~~~l~~--- 166 (574)
...+++++++++|+++|+|.|..++.+..+++|+.| ++||+..++...+...|..+.+.+......
T Consensus 111 ~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 190 (491)
T 4gc0_A 111 SINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGD 190 (491)
T ss_dssp CSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccc
Confidence 012468999999999999999999999999999998 689999999999988888777666654432
Q ss_pred -----CChhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhcccCCCchhhhhh
Q 008210 167 -----NSSSKLLLVLAVGVPAVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYA 241 (574)
Q Consensus 167 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (574)
...|++.+....++.++..+..++.++.|++...
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~----------------------------------------- 229 (491)
T 4gc0_A 191 ASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMS----------------------------------------- 229 (491)
T ss_dssp TTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHH-----------------------------------------
T ss_pred cccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHH-----------------------------------------
Confidence 1356666666666666666555555443322110
Q ss_pred HHHHHHHHHhhhhcccccchhcccCCcccccccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHH
Q 008210 242 SLFIMIILLMAPLAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGSFRDNDDVSEVALL 321 (574)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (574)
+.++++. .+.+. +. ...++.+.+
T Consensus 230 ------------------------~~~~~~a--------------------~~~l~------------~~-~~~~~~~~~ 252 (491)
T 4gc0_A 230 ------------------------RGKQEQA--------------------EGILR------------KI-MGNTLATQA 252 (491)
T ss_dssp ------------------------TTCHHHH--------------------HHHHH------------HH-HHHHHHHHH
T ss_pred ------------------------cCchhHH--------------------HHhHH------------Hh-cCCchhHHH
Confidence 1110000 00000 00 000000000
Q ss_pred HhhhccchhhhccCCCCCCCccHHHhhhchhHHHHH-HHHHhhcccceeeeccHHHHHHhhCCc--hhhHHHHHHHHHHh
Q 008210 322 LAEGEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLF-LVYFAGVGSGVTVLNNLAQIGIAQGVH--DTTILLSLFSFCNF 398 (574)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~i~~~ 398 (574)
..+.+...++++ +.......++.+...... ...+........+..+.+.+.+..+.+ +.........+...
T Consensus 253 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (491)
T 4gc0_A 253 VQEIKHSLDHGR------KTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINL 326 (491)
T ss_dssp HHHHHHHHHHHH------HHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh------hhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHH
Confidence 000000000000 001112223333333322 233333333334455666677776664 34445567778889
Q ss_pred hhhhhhhhhhhhhhccccCchhhHHHHHHHHHHHHHHHHh---c-Cch-HHHHHHHHHhhhcc-chhhhHHHHHHhhcCc
Q 008210 399 VGRLGGGVVSEHFVRKTIPRTIWMTCTQVIMIITYLLFAS---S-IDG-TLYAATALLGICYG-VQFSIMIPTVSELFGL 472 (574)
Q Consensus 399 ig~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~i~~~~~~~---~-~~~-~l~~~~~l~g~~~g-~~~~~~~~~~~~~~~~ 472 (574)
++.++++++.||+||| ..+..+.....++++.+.. . ... ...+...+...+++ +..+....+.+|++|+
T Consensus 327 ~~~~~~~~l~dr~Grr-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt 401 (491)
T 4gc0_A 327 TFTVLAIMTVDKFGRK-----PLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN 401 (491)
T ss_dssp HHHHHHHHHHHHHCSH-----HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHhhcCc-----chhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCH
Confidence 9999999999999999 4555555555555544331 1 222 22222222222222 2346667899999999
Q ss_pred cchhhhhhhhhhhhhhHHHHHhHhHHHhhhhhhhhhhcccccccCCcccccCCccchhHHHHHHHHHHHHHHHHHHHhhh
Q 008210 473 EHFGLISNFLALGNPLAAFLFSGLLAGYIYDNEAAKQQGFNLLTSNVVSCLGPNCFRITFFVLAGVCCVGSILSIILNIR 552 (574)
Q Consensus 473 ~~~g~~~g~~~~~~~lg~~~~gp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (574)
+.|+++.|+.+..+.++++ +++.+.+.+.+....... .++...|++.+++++++.+..+++.+|
T Consensus 402 ~~R~~~~g~~~~~~~~~~~-i~~~~~p~l~~~~~~~~~---------------~~~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 402 AIRGKALAIAVAAQWLANY-FVSWTFPMMDKNSWLVAH---------------FHNGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHH-HHHTHHHHHCHHHHHHHH---------------HTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh---------------hhhhHHHHHHHHHHHHHHHHHHheecC
Confidence 9999999999999999998 888888887665321110 124567888888899988888888899
Q ss_pred hhhhHH
Q 008210 553 IRPVYQ 558 (574)
Q Consensus 553 ~~~~~~ 558 (574)
+|.+..
T Consensus 466 Tkg~tL 471 (491)
T 4gc0_A 466 TKGKTL 471 (491)
T ss_dssp CTTCCH
T ss_pred CCCCCH
Confidence 887654
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.95 E-value=9.7e-27 Score=248.92 Aligned_cols=413 Identities=12% Similarity=0.005 Sum_probs=251.5
Q ss_pred chHHHHhh-----hCCCHHHHHHHHHHHHhhhhc-cccchhcccc-CCChHHHHHHHHHHHHHHHHHHHHHhhccCChhH
Q 008210 34 YSHSLKSV-----LGFNQHQLTMLGVANDIGENV-GLLPGLASNK-FPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPY 106 (574)
Q Consensus 34 ~~~~l~~~-----l~~s~~~~~~i~~~~~~~~~~-~~~~G~l~dr-~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 106 (574)
+.++++++ +|.+..+.+++.+...++..+ +++.|+++|| +|||+++.++.++..++++++ ..+ +++
T Consensus 36 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~-----~~~--~~~ 108 (491)
T 4aps_A 36 LLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVL-----ALP--FGA 108 (491)
T ss_dssp HHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH-----HSC--CST
T ss_pred HHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH-----HHh--hhH
Confidence 34445555 999999999977777777765 9999999999 899999999999999886653 222 357
Q ss_pred HHHHHHHHHHHhhhHhhhhHHHHHHHhhCC-CC--cchHHHHHHhhhhhHHHHHHHHHHHhccCChhHHHHHHHHHHHHH
Q 008210 107 WLLWIALCVATNSSAWLGTAVLVTNMRNFP-LS--RGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAV 183 (574)
Q Consensus 107 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~fp-~~--rg~a~gi~~~~~~~g~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~ 183 (574)
+.+++.|++.|+|.|...+....++.+++| ++ |+.+.++...+..+|..++|.+.+.+.+..+|++.+.+..+..++
T Consensus 109 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~ 188 (491)
T 4aps_A 109 SALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFI 188 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 889999999999999999999999999998 56 777888888999999999999998887767788888777666555
Q ss_pred HHHHHHhcccC-CCCCCCCCCCC-cchhhHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHhhhhcccccch
Q 008210 184 CLVMMYFVRPC-TPASGEDSAAP-SHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASLFIMIILLMAPLAIPVKMT 261 (574)
Q Consensus 184 ~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (574)
+.+..++.++. .++.+++++.+ .......... .....+..+.+..+. ....
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~g~~l~~~~~~~~~----~~~~-- 241 (491)
T 4aps_A 189 GLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLV---------------------KVSLAVAGFIAIIVV----MNLV-- 241 (491)
T ss_dssp HHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHH---------------------HCCCCCHHHHHHHHH----HHHH--
T ss_pred HHHHHHHhCcccccccccCCCCccccchhHHHHH---------------------HHHHHHHHHHHHHHH----HHhc--
Confidence 55544433221 11111111111 0000000000 000000000000000 0000
Q ss_pred hcccCCcccccccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHH---HhhhccchhhhccCCCC
Q 008210 262 ICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGSFRDNDDVSEVALL---LAEGEGAVRRKKRRPKR 338 (574)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 338 (574)
+ ..+. ++....... ...........+ .+.
T Consensus 242 -----~------------------------~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 273 (491)
T 4aps_A 242 -----G------------------------WNSL-----------------PAYINLLTIVAIAIPVFYFAWMIS--SVK 273 (491)
T ss_dssp -----S------------------------SCCT-----------------THHHHHHHHHHHHHHHHHHHHHC------
T ss_pred -----c------------------------Cccc-----------------ccchhhhhHHHHHHHHHHHHHHhh--ccc
Confidence 0 0000 111000000 000000000000 000
Q ss_pred CCCccHHHhhhchhHHHHHHHHHhhcccceeeeccHHHHHHh-hCCc--hhhHHHHHHHHHHhhhhhhhhhhhhhhhccc
Q 008210 339 GEDFKFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIA-QGVH--DTTILLSLFSFCNFVGRLGGGVVSEHFVRKT 415 (574)
Q Consensus 339 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~--~~~~~~~~~~i~~~ig~~~~G~l~Dr~g~r~ 415 (574)
. ...+..+....+..+...++..........+++.+.++ .+.+ +.+...+...+...++.++.|++.||++||+
T Consensus 274 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~ 350 (491)
T 4aps_A 274 V---TSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ 350 (491)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred c---cHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccC
Confidence 0 00111122233333333333333333344566667665 3443 5566777888888999999999999999985
Q ss_pred cCchhhHHHHHHHHHHHHHHHHhc----------CchHHHHHHHHHhhhccchhhhHHHHHHhhcCccchhhhhhhhhhh
Q 008210 416 IPRTIWMTCTQVIMIITYLLFASS----------IDGTLYAATALLGICYGVQFSIMIPTVSELFGLEHFGLISNFLALG 485 (574)
Q Consensus 416 ~~~~~~~~~~~~~~~i~~~~~~~~----------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 485 (574)
..+...+..+.++..+++.++... +.....+...+.|++.+...+....++.|.+|++.+|.+.|+.++.
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 430 (491)
T 4aps_A 351 PSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLS 430 (491)
T ss_dssp --CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 443344556666666666554431 2235566777888888888888899999999999999999999999
Q ss_pred hhhHHHHHhHhHHHhhhhhhhhhhcccccccCCcccccCCccchhHHHHHHHHHHHHHHHHHHHhhhhh
Q 008210 486 NPLAAFLFSGLLAGYIYDNEAAKQQGFNLLTSNVVSCLGPNCFRITFFVLAGVCCVGSILSIILNIRIR 554 (574)
Q Consensus 486 ~~lg~~~~gp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (574)
..+|+. ++|.+.+.+.|. ++...|++.+++++++.++.++..++.+
T Consensus 431 ~~~g~~-i~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 431 SSVGSA-LNAQLVTLYNAK----------------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp HHHHHH-HHHHHGGGGGGS----------------------STTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHHH-HHHHHHHHHhcc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 899998888765 3667788877777777666655555443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.94 E-value=1.3e-26 Score=238.97 Aligned_cols=327 Identities=13% Similarity=0.032 Sum_probs=235.1
Q ss_pred cchhhcchHHHHhhhCCCHHHHHHHHHHHHhhhhc-cccchhccccCCChHHHHHHHHHHHHHHHHHHHHHhhccCChhH
Q 008210 28 AYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPY 106 (574)
Q Consensus 28 ~~~~~~~~~~l~~~l~~s~~~~~~i~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 106 (574)
...+....|.+.+++|.+..+.+++.+...++..+ +++.|+++||+|||+++.++.++..++.+++... +++
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~ 88 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------SSL 88 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-------HHH
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-------ccH
Confidence 44566677889999999999999977777777755 9999999999999999999999999997765443 478
Q ss_pred HHHHHHHHHHHhhhHhhhhHHHHHHHhhCC-CCcchHHHHHHhhhhhHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHH
Q 008210 107 WLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCL 185 (574)
Q Consensus 107 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~fp-~~rg~a~gi~~~~~~~g~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 185 (574)
+.+++.|++.|++.+..++....++.+++| ++|++++++...+.++|..+++.+...+.+..+|++.+.+..+..++..
T Consensus 89 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 168 (375)
T 2gfp_A 89 TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVT 168 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999997 7899999999999999999999988877554456655543322222111
Q ss_pred HHHHhcccCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHhhhhcccccchhccc
Q 008210 186 VMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASLFIMIILLMAPLAIPVKMTICRK 265 (574)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (574)
+... ...
T Consensus 169 ~~~~------------------------------------------------------------------~~~------- 175 (375)
T 2gfp_A 169 FSMA------------------------------------------------------------------RWM------- 175 (375)
T ss_dssp CCCC------------------------------------------------------------------CSS-------
T ss_pred HHHH------------------------------------------------------------------HHC-------
Confidence 1000 000
Q ss_pred CCcccccccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHhhhccchhhhccCCCCCCCccHH
Q 008210 266 RTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGSFRDNDDVSEVALLLAEGEGAVRRKKRRPKRGEDFKFT 345 (574)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (574)
|++ +++. ++ + ++...+++
T Consensus 176 -~~~----------------------~~~~-----------------~~-----------------~-----~~~~~~~~ 193 (375)
T 2gfp_A 176 -PET----------------------RPVD-----------------AP-----------------R-----TRLLTSYK 193 (375)
T ss_dssp -CCC----------------------STTT-----------------CC-----------------C-----CCTTTCST
T ss_pred -ccc----------------------CCCC-----------------cc-----------------c-----ccHHHHHH
Confidence 000 0000 00 0 00012235
Q ss_pred HhhhchhHHHHHHHHHhhcccceeeeccHHHHHHh-hCCc--hhhHHHHHHHHHHhhhhhhhhhhhhhhhccccCchhhH
Q 008210 346 EAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIA-QGVH--DTTILLSLFSFCNFVGRLGGGVVSEHFVRKTIPRTIWM 422 (574)
Q Consensus 346 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~--~~~~~~~~~~i~~~ig~~~~G~l~Dr~g~r~~~~~~~~ 422 (574)
+.+|+|.+|...+..++.......+..+.|.+.++ .|.+ +.+...+...++..+++++.+++.||++++ ...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~-----~~~ 268 (375)
T 2gfp_A 194 TLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL-----MWQ 268 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH-----HHH
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Confidence 67888998888777766655555555566666655 5664 456777888899999999999999998775 222
Q ss_pred HHHHHHHHHHHH--HHHh---cCchHHHHHHHHHhhhccchhhhHHHHHHhhcCccchhhhhhhhhhhhhhHHHHHhHhH
Q 008210 423 TCTQVIMIITYL--LFAS---SIDGTLYAATALLGICYGVQFSIMIPTVSELFGLEHFGLISNFLALGNPLAAFLFSGLL 497 (574)
Q Consensus 423 ~~~~~~~~i~~~--~~~~---~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~gp~l 497 (574)
.... ....+.. .... .+....++...+.|++.+...+....++.|.+| +++|++.|+.+....++.. ++|.+
T Consensus 269 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~-~~~~~ 345 (375)
T 2gfp_A 269 SVIC-CLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSG-VLASL 345 (375)
T ss_dssp HHHH-HHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHH-CCSTT
T ss_pred HHHH-HHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHH-HHHHH
Confidence 2211 1222221 1111 122345566778889999889999999999998 8999999999999999998 89999
Q ss_pred HHhhhhh
Q 008210 498 AGYIYDN 504 (574)
Q Consensus 498 ~g~l~~~ 504 (574)
.|.+.+.
T Consensus 346 ~g~l~~~ 352 (375)
T 2gfp_A 346 SAMLPQT 352 (375)
T ss_dssp CTHHHHH
T ss_pred HHHHhcC
Confidence 9999876
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.91 E-value=1.2e-24 Score=227.94 Aligned_cols=362 Identities=13% Similarity=0.064 Sum_probs=217.1
Q ss_pred hhcchHHHHhhhCCCHHHHHHHHHHHHhhhhc-cccchhccccCCChHHHHHHHHHHHHHHHHHHHHHhhccCChhH-HH
Q 008210 31 FPLYSHSLKSVLGFNQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPY-WL 108 (574)
Q Consensus 31 ~~~~~~~l~~~l~~s~~~~~~i~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~-~~ 108 (574)
++.+..++++++|++..+.+++.+...++..+ +++.|+++||+|||+++.++.+++.++...+... ... +.. ..
T Consensus 27 ~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~--~~~--~~~~~~ 102 (417)
T 2cfq_A 27 FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF--IFG--PLLQYN 102 (417)
T ss_dssp TTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHH--THH--HHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH--HHH--HHHHHH
Confidence 34444457788999999999976666666655 9999999999999999998887765532111110 110 000 11
Q ss_pred HHHHHHHHHhhhHhhhhHHHHHHHhhCC---CCcchHHHHHHhhhhhHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHH
Q 008210 109 LWIALCVATNSSAWLGTAVLVTNMRNFP---LSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCL 185 (574)
Q Consensus 109 l~~~~~l~G~g~g~~~~~~~~~~~~~fp---~~rg~a~gi~~~~~~~g~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 185 (574)
+...+++.|++.|..+++....+.++.+ ++|+.+.|.......+|..++|.+...+.+ ..|++.+++..++.++..
T Consensus 103 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~ 181 (417)
T 2cfq_A 103 ILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILA 181 (417)
T ss_dssp CCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHH
Confidence 2345666666666555444555555554 456888888888888998888888776643 123332221111100000
Q ss_pred HHHHhcccCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHhhhhcccccchhccc
Q 008210 186 VMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASLFIMIILLMAPLAIPVKMTICRK 265 (574)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (574)
+. . ...
T Consensus 182 ~~------------------------------------------------------------------~-~~~------- 187 (417)
T 2cfq_A 182 VL------------------------------------------------------------------L-FFA------- 187 (417)
T ss_dssp HH------------------------------------------------------------------S-CSS-------
T ss_pred HH------------------------------------------------------------------H-HHc-------
Confidence 00 0 000
Q ss_pred CCcccccccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHhhhccchhhhccCCCCCCCccHH
Q 008210 266 RTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGSFRDNDDVSEVALLLAEGEGAVRRKKRRPKRGEDFKFT 345 (574)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (574)
+|++.+ + .+++ ++. + ++ ++......++
T Consensus 188 ~~~~~~-~------------------~~~~-----------------~~~-----------~----~~--~~~~~~~~~~ 214 (417)
T 2cfq_A 188 KTDAPS-S------------------ATVA-----------------NAV-----------G----AN--HSAFSLKLAL 214 (417)
T ss_dssp CCCCSC-S------------------SCSS-----------------SSS-----------S----SC--CCCCCHHHHH
T ss_pred Cccccc-c------------------cccc-----------------ccc-----------c----cc--cccccHHHHH
Confidence 000000 0 0000 000 0 00 0000112345
Q ss_pred HhhhchhHHHHHHHHHhhcccceeeeccHHHHHHhh-CC-----chhhHHHHHHHHHHhhhhhhhhhhhhhhhccccCch
Q 008210 346 EAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQ-GV-----HDTTILLSLFSFCNFVGRLGGGVVSEHFVRKTIPRT 419 (574)
Q Consensus 346 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~-----~~~~~~~~~~~i~~~ig~~~~G~l~Dr~g~r~~~~~ 419 (574)
+.+|+|.+|...+..+........+..+.|.++++. +. ...+...++..++..++.+..|+++||+|||
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~----- 289 (417)
T 2cfq_A 215 ELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK----- 289 (417)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----
T ss_pred HHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----
Confidence 678899888766654433222222233456665542 22 1224556667778889999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHhhhccchhhhHHHHHHhhcCccchhhhhhhh-hhhhhhHHHHHhHhH
Q 008210 420 IWMTCTQVIMIITYLLFASSI-DGTLYAATALLGICYGVQFSIMIPTVSELFGLEHFGLISNFL-ALGNPLAAFLFSGLL 497 (574)
Q Consensus 420 ~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~lg~~~~gp~l 497 (574)
..+..+..+..++++++...+ ...+++...+.+++.+...+....+++|.+|++.+|+++|+. +....+++. ++|.+
T Consensus 290 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~-~gp~l 368 (417)
T 2cfq_A 290 NALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI-FMSVL 368 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHH-HHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHH-Hhhhh
Confidence 555566666666655554433 334444555566666555566678999999999999999994 888889998 89999
Q ss_pred HHhhhhhhhhhhcccccccCCcccccCCccchhHHHHHHHHHHHHHHHHHHHhh
Q 008210 498 AGYIYDNEAAKQQGFNLLTSNVVSCLGPNCFRITFFVLAGVCCVGSILSIILNI 551 (574)
Q Consensus 498 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (574)
.|++.|.. +|+..|.+++++++++.++.+...+
T Consensus 369 ~G~l~~~~---------------------g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 369 AGNMYESI---------------------GFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHTHHHHS---------------------HHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHhc---------------------CcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999873 4778888888877777665543333
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.90 E-value=2.9e-22 Score=216.06 Aligned_cols=151 Identities=15% Similarity=0.066 Sum_probs=120.3
Q ss_pred cchHHHHhhhC------CCHHHHHHHHHHHHhhhhc-cccchhccccC-CChHHHHHHHHHHHHHHHHHHHHHhhccCCh
Q 008210 33 LYSHSLKSVLG------FNQHQLTMLGVANDIGENV-GLLPGLASNKF-PPWLVLFIGSLACFFGYGVLWLAVSRTVESL 104 (574)
Q Consensus 33 ~~~~~l~~~l~------~s~~~~~~i~~~~~~~~~~-~~~~G~l~dr~-G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 104 (574)
.+.+++++++| ++..+.+++.+...++..+ .++.|+++||+ |||+++.++.++..++.+++.+. . .
T Consensus 34 ~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-----~-~ 107 (524)
T 2xut_A 34 ILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-----E-H 107 (524)
T ss_dssp HHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT-----S-S
T ss_pred HHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh-----c-c
Confidence 33455778899 9999999977777677654 99999999999 99999999999988886654322 2 1
Q ss_pred hHHHHHHHHHHHHhhhHhhhhHHHHHHHhhCC-CCcchHHHH---HHhhhhhHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 008210 105 PYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGI---LKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGV 180 (574)
Q Consensus 105 ~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~fp-~~rg~a~gi---~~~~~~~g~~i~~~i~~~l~~~~~~~~~~~~~~~~ 180 (574)
+++.+++.|++.|+|.+...+....++.+++| ++|+++.+. ...+.++|..+++.+.+.+.+..+|++.+.+..+.
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~ 187 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVL 187 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 57889999999999999999999999999998 578877666 88888899999988888777666788877766665
Q ss_pred HHHHHHHHH
Q 008210 181 PAVCLVMMY 189 (574)
Q Consensus 181 ~~~~~~~~~ 189 (574)
.++..+..+
T Consensus 188 ~~~~~~~~~ 196 (524)
T 2xut_A 188 MFVATVFFW 196 (524)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.36 E-value=2.3e-12 Score=135.23 Aligned_cols=175 Identities=12% Similarity=0.054 Sum_probs=138.0
Q ss_pred chhHHHHHHHHHhhcccceeeeccHHHHHHhhCCc--hhhHHHHHHHHHHhhhhhhhhhhhhhhhccccCchhhHHHHHH
Q 008210 350 KADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQGVH--DTTILLSLFSFCNFVGRLGGGVVSEHFVRKTIPRTIWMTCTQV 427 (574)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~i~~~ig~~~~G~l~Dr~g~r~~~~~~~~~~~~~ 427 (574)
.+.++......+........+...+|.+.+++ .+ +.++..+...++..++.+.+|+++||+||| .++..+.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r-----~~l~~~~~ 100 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR-----VFLPAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCch-----HHHHHHHH
Confidence 34455555555554444344445567777777 63 678889999999999999999999999999 67777888
Q ss_pred HHHHHHHHHHh----cC-chHHHHHHHHHhhhccchhhhHHHHHHhhcCccchhhhhhhhhhhhhhHHHHHhHhHHHhhh
Q 008210 428 IMIITYLLFAS----SI-DGTLYAATALLGICYGVQFSIMIPTVSELFGLEHFGLISNFLALGNPLAAFLFSGLLAGYIY 502 (574)
Q Consensus 428 ~~~i~~~~~~~----~~-~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~gp~l~g~l~ 502 (574)
+..++.++... .+ ...+++..++.|++.+...+....++.|.+|+++|+.+.|+......+|.. ++|.+.+++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~ 179 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG-IPPLLFLLGM 179 (451)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHT-SHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 88888777665 43 447778889999999999999999999999999999999999999999998 8999999988
Q ss_pred hhhhhhhcccccccCCcccccCCcc-chhHHHHHHHHHHHHHHHHHHHhhh
Q 008210 503 DNEAAKQQGFNLLTSNVVSCLGPNC-FRITFFVLAGVCCVGSILSIILNIR 552 (574)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (574)
+.. + |+..|++.++++++..++.++..++
T Consensus 180 ~~~---------------------g~w~~~f~~~~~~~~~~~~~~~~~~~~ 209 (451)
T 1pw4_A 180 AWF---------------------NDWHAALYMPAFCAILVALFAFAMMRD 209 (451)
T ss_dssp HHT---------------------CCSTTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred HHh---------------------ccHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 763 4 8999998888777766655555444
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.32 E-value=1.2e-11 Score=131.61 Aligned_cols=173 Identities=14% Similarity=0.150 Sum_probs=136.2
Q ss_pred hHHHHHHHHHhhcccceeeeccHHHHHHh------hCCc--hhhHHHHHHHHHHhhhhhhhhhhhhh-hhccccCchhhH
Q 008210 352 DFWLLFLVYFAGVGSGVTVLNNLAQIGIA------QGVH--DTTILLSLFSFCNFVGRLGGGVVSEH-FVRKTIPRTIWM 422 (574)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~--~~~~~~~~~~i~~~ig~~~~G~l~Dr-~g~r~~~~~~~~ 422 (574)
.+|......++...........++.+.++ +|.+ +.++..+.+.++..++.+++|+++|| +||| ..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r-----~~~ 88 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR-----PAV 88 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH-----HHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-----HHH
Confidence 45565555555544444455566666654 6774 56788899999999999999999999 8999 677
Q ss_pred HHHHHHHHHHHHHHHhcC-chHHHHHHHHHhhhccchhhhHHHHHHhhcCccc--hhhhhhhhhhhhhhHHHHHhHhHHH
Q 008210 423 TCTQVIMIITYLLFASSI-DGTLYAATALLGICYGVQFSIMIPTVSELFGLEH--FGLISNFLALGNPLAAFLFSGLLAG 499 (574)
Q Consensus 423 ~~~~~~~~i~~~~~~~~~-~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~lg~~~~gp~l~g 499 (574)
..+.++..++.++....+ ...+++..++.|++.+...+....+++|.+|+++ ++.+.++.+....+|.. ++|.+.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~ 167 (491)
T 4aps_A 89 FWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAF-IAPLIVG 167 (491)
T ss_dssp HHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHH-HHHHHHH
Confidence 778888888887776554 4577788899999999999999999999999988 88888889999999998 8999999
Q ss_pred hhhhhhhhhhcccccccCCcccccCCccchhHHHHHHHHHHHHHHHHHHHhh
Q 008210 500 YIYDNEAAKQQGFNLLTSNVVSCLGPNCFRITFFVLAGVCCVGSILSIILNI 551 (574)
Q Consensus 500 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (574)
.+.+.. +|+..|++.++..+++.++.+...+
T Consensus 168 ~l~~~~---------------------g~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 168 AAQEAA---------------------GYHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHHHS---------------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhh---------------------hHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 998873 5999999887777776655544433
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.30 E-value=1.4e-11 Score=128.79 Aligned_cols=127 Identities=15% Similarity=0.083 Sum_probs=109.3
Q ss_pred eeccHHHHHHhhCCc--hhhHHHHHHHHHHhhhhhhhhhhhhhhhccccCchhhHHHHHHHHHHHHHHH---Hhc-CchH
Q 008210 370 VLNNLAQIGIAQGVH--DTTILLSLFSFCNFVGRLGGGVVSEHFVRKTIPRTIWMTCTQVIMIITYLLF---ASS-IDGT 443 (574)
Q Consensus 370 ~~~~~~~~~~~~g~~--~~~~~~~~~~i~~~ig~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~i~~~~~---~~~-~~~~ 443 (574)
.....|.+.+++|.+ +.++..+...++..++.+.+|+++||+||| ..+..+.++..++.++. ... +...
T Consensus 45 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (438)
T 3o7q_A 45 NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK-----AGIITGLFLYALGAALFWPAAEIMNYTL 119 (438)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHH-----HHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch-----HHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 344567777788885 567888999999999999999999999999 67777888888887776 443 3446
Q ss_pred HHHHHHHHhhhccchhhhHHHHHHhhcCccchhhhhhhhhhhhhhHHHHHhHhHHHhhh
Q 008210 444 LYAATALLGICYGVQFSIMIPTVSELFGLEHFGLISNFLALGNPLAAFLFSGLLAGYIY 502 (574)
Q Consensus 444 l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~gp~l~g~l~ 502 (574)
+++..++.|++.+...+....+++|.+|+++|+.+.|+.+....+|.. ++|.+.+.+.
T Consensus 120 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~ 177 (438)
T 3o7q_A 120 FLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAI-IAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHH-HHHHHTTHHH
T ss_pred HHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 778889999999999999999999999999999999999999999998 8999999988
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.19 E-value=5.2e-11 Score=127.74 Aligned_cols=168 Identities=13% Similarity=0.083 Sum_probs=129.6
Q ss_pred hHHHHHHHHHhhcccceeeeccHHHHHH-hhC------Cc--hhhHHHHHHHHHHhhhhhhhhhhhhhh-hccccCchhh
Q 008210 352 DFWLLFLVYFAGVGSGVTVLNNLAQIGI-AQG------VH--DTTILLSLFSFCNFVGRLGGGVVSEHF-VRKTIPRTIW 421 (574)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g------~~--~~~~~~~~~~i~~~ig~~~~G~l~Dr~-g~r~~~~~~~ 421 (574)
.+|.+.+..++..........+++.+.+ ++| .+ +.++..+.+.++..++.+.+|+++||+ ||| ..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r-----~~ 87 (524)
T 2xut_A 13 QIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY-----NT 87 (524)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----HH
Confidence 4455555555544444444556666655 467 74 567888999999999999999999999 999 66
Q ss_pred HHHHHHHHHHHHHHHHhc--CchHHHHHHHHHhhhccchhhhHHHHHHhhcCccchhhhhhh---hhhhhhhHHHHHhHh
Q 008210 422 MTCTQVIMIITYLLFASS--IDGTLYAATALLGICYGVQFSIMIPTVSELFGLEHFGLISNF---LALGNPLAAFLFSGL 496 (574)
Q Consensus 422 ~~~~~~~~~i~~~~~~~~--~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~---~~~~~~lg~~~~gp~ 496 (574)
+..+.++..++.++.... +...+++..++.|++.+...+....++.|.+|+++++...+. .+....+|.. ++|.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~-~g~~ 166 (524)
T 2xut_A 88 ILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSF-FASL 166 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 777777777777776654 344677788899999999999999999999999999776666 8888999998 8999
Q ss_pred HHHhhhhhhhhhhcccccccCCcccccCCccchhHHHHHHHHHHHHHHHH
Q 008210 497 LAGYIYDNEAAKQQGFNLLTSNVVSCLGPNCFRITFFVLAGVCCVGSILS 546 (574)
Q Consensus 497 l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (574)
+.+.+.+.. +|+..|++.+++.+++.+..
T Consensus 167 ~~~~l~~~~---------------------g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 167 SMPLLLKNF---------------------GAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp TSTHHHHTS---------------------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccc---------------------cHHHHHHHHHHHHHHHHHHH
Confidence 999988762 58999988877766655444
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.19 E-value=1.2e-11 Score=126.72 Aligned_cols=148 Identities=16% Similarity=0.232 Sum_probs=120.9
Q ss_pred eeccHHHHHHhhCCc--hhhHHHHHHHHHHhhhhhhhhhhhhhhhccccCchhhHHHHHHHHHHHHHHHHhc-CchHHHH
Q 008210 370 VLNNLAQIGIAQGVH--DTTILLSLFSFCNFVGRLGGGVVSEHFVRKTIPRTIWMTCTQVIMIITYLLFASS-IDGTLYA 446 (574)
Q Consensus 370 ~~~~~~~~~~~~g~~--~~~~~~~~~~i~~~ig~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~ 446 (574)
+....|.+.+++|.+ +.++..+...++..++.+..|+++||+||| +.+..+.+...++.++.... +...+++
T Consensus 19 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 93 (375)
T 2gfp_A 19 YIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRR-----PVILVGMSIFMLATLVAVTTSSLTVLIA 93 (375)
T ss_dssp HHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----hhHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 444567777778875 467788899999999999999999999999 45556666777776665543 3446677
Q ss_pred HHHHHhhhccchhhhHHHHHHhhcCccchhhhhhhhhhhhhhHHHHHhHhHHHhhhhhhhhhhcccccccCCcccccCCc
Q 008210 447 ATALLGICYGVQFSIMIPTVSELFGLEHFGLISNFLALGNPLAAFLFSGLLAGYIYDNEAAKQQGFNLLTSNVVSCLGPN 526 (574)
Q Consensus 447 ~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~gp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (574)
..++.|++.+...+....++.|.+|+++|+++.|+.+....+|.. ++|.+.+++.+..
T Consensus 94 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~--------------------- 151 (375)
T 2gfp_A 94 ASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPL-LAPLIGGLLDTMW--------------------- 151 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHH-HHHHHHHHSSCHH---------------------
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhc---------------------
Confidence 888999999999999999999999999999999999999999998 8999999998863
Q ss_pred cchhHHHHHHHHHHHHHH
Q 008210 527 CFRITFFVLAGVCCVGSI 544 (574)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~ 544 (574)
+|+..|++.++..++..+
T Consensus 152 ~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 152 NWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 488888887776666544
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.77 E-value=4.9e-08 Score=103.42 Aligned_cols=112 Identities=15% Similarity=0.101 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhhhhccccCchhhHHHHHHHHHHHHHHHHh-------------------cCchHHHHH
Q 008210 387 TILLSLFSFCNFVGRLGGGVVSEHFVRKTIPRTIWMTCTQVIMIITYLLFAS-------------------SIDGTLYAA 447 (574)
Q Consensus 387 ~~~~~~~~i~~~ig~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~i~~~~~~~-------------------~~~~~l~~~ 447 (574)
++..+.+.++..+|.+++|+++||+||| +.+.++.++..++.++.+. .+...+++.
T Consensus 58 g~~~s~~~~G~~iG~~~~G~laDr~GRk-----~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 132 (491)
T 4gc0_A 58 GFCVASALIGCIIGGALGGYCSNRFGRR-----DSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY 132 (491)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHTCHH-----HHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence 4677888899999999999999999999 7777777877777766542 223467889
Q ss_pred HHHHhhhccchhhhHHHHHHhhcCccchhhhhhhhhhhhhhHHHHHhHhHHHhhhhh
Q 008210 448 TALLGICYGVQFSIMIPTVSELFGLEHFGLISNFLALGNPLAAFLFSGLLAGYIYDN 504 (574)
Q Consensus 448 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~gp~l~g~l~~~ 504 (574)
.++.|++.|+..+..+.+++|..|+++|+...++...+..+|.. +++.+...+.+.
T Consensus 133 R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~-~~~~~~~~~~~~ 188 (491)
T 4gc0_A 133 RIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQL-LVYCVNYFIARS 188 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHH-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhh-hhhhcchhhccc
Confidence 99999999999999999999999999999999999998888886 677555554443
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.66 E-value=4.6e-08 Score=101.64 Aligned_cols=135 Identities=7% Similarity=-0.059 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHhhhh-ccccchhccccCCChHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHhhhHhhhh
Q 008210 47 HQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGT 125 (574)
Q Consensus 47 ~~~~~i~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~ 125 (574)
.+.+++.....+... ..++.|++.||+|||+++.++.++..++.+++ .... +.+.+++..++.+++.+...+
T Consensus 259 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~l~~~~~~~~~~ 331 (417)
T 2cfq_A 259 RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS-----SFAT--SALEVVILKTLHMFEVPFLLV 331 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-----TTCC--SHHHHHHHTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH-----HHhc--cHHHHHHHHHHHHHHHHHHHH
Confidence 344554444444443 48899999999999999988887777664331 2222 356677777778887776666
Q ss_pred HHHHHHHhhCC-CCcchHHHHH-HhhhhhHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHH
Q 008210 126 AVLVTNMRNFP-LSRGTVAGIL-KGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCLVMM 188 (574)
Q Consensus 126 ~~~~~~~~~fp-~~rg~a~gi~-~~~~~~g~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 188 (574)
....++.+.+| +.||++.++. ....++|+.++|.+.+.+.+..++...+.+.....+++.+..
T Consensus 332 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 396 (417)
T 2cfq_A 332 GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLIS 396 (417)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 67788999999 5799999985 777789999999988877664445544544444444444443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=26.81 E-value=11 Score=20.28 Aligned_cols=14 Identities=29% Similarity=0.207 Sum_probs=10.9
Q ss_pred cchhccccCCChHH
Q 008210 65 LPGLASNKFPPWLV 78 (574)
Q Consensus 65 ~~G~l~dr~G~r~~ 78 (574)
++|.+..|||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46888999999854
Done!