Query 008211
Match_columns 573
No_of_seqs 242 out of 1172
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 20:54:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008211.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008211hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13178 DUF4005: Protein of u 99.5 8.3E-15 1.8E-19 130.0 7.2 76 449-538 12-91 (102)
2 KOG0160 Myosin class V heavy c 97.8 4.2E-05 9.2E-10 89.1 8.3 67 111-181 672-739 (862)
3 PF00612 IQ: IQ calmodulin-bin 97.8 2.4E-05 5.2E-10 50.5 3.3 21 112-132 1-21 (21)
4 KOG0160 Myosin class V heavy c 97.4 0.00044 9.6E-09 80.9 8.2 76 97-177 683-758 (862)
5 smart00015 IQ Short calmodulin 97.3 0.00024 5.3E-09 48.1 3.0 22 111-132 2-23 (26)
6 KOG0520 Uncharacterized conser 96.9 0.0008 1.7E-08 79.1 4.2 72 110-181 808-887 (975)
7 PTZ00014 myosin-A; Provisional 96.9 0.0015 3.2E-08 76.9 6.4 40 113-152 778-818 (821)
8 KOG0164 Myosin class I heavy c 96.5 0.0072 1.6E-07 69.1 8.0 58 112-180 696-754 (1001)
9 PF00612 IQ: IQ calmodulin-bin 95.8 0.012 2.7E-07 37.9 3.2 19 135-153 2-20 (21)
10 COG5022 Myosin heavy chain [Cy 95.6 0.025 5.4E-07 69.1 7.2 75 102-177 732-810 (1463)
11 smart00015 IQ Short calmodulin 93.7 0.077 1.7E-06 35.8 3.1 20 134-153 3-22 (26)
12 KOG2128 Ras GTPase-activating 93.4 0.2 4.3E-06 61.4 7.7 84 97-180 545-642 (1401)
13 PTZ00014 myosin-A; Provisional 93.0 0.2 4.3E-06 59.5 7.0 41 135-178 778-818 (821)
14 KOG0520 Uncharacterized conser 90.4 0.49 1.1E-05 56.6 6.3 82 97-180 820-934 (975)
15 KOG0377 Protein serine/threoni 83.6 1.5 3.3E-05 48.6 4.9 35 110-144 15-49 (631)
16 KOG0162 Myosin class I heavy c 83.0 2.2 4.7E-05 49.9 5.9 45 106-153 687-735 (1106)
17 KOG2128 Ras GTPase-activating 81.7 2.2 4.8E-05 52.7 5.7 62 116-180 539-612 (1401)
18 KOG4427 E3 ubiquitin protein l 79.0 1.9 4.1E-05 50.5 3.7 24 109-132 27-50 (1096)
19 KOG0161 Myosin class II heavy 74.4 6 0.00013 51.2 6.7 39 136-174 775-813 (1930)
20 KOG0942 E3 ubiquitin protein l 73.0 3 6.5E-05 49.7 3.4 26 107-132 24-49 (1001)
21 COG5022 Myosin heavy chain [Cy 72.3 17 0.00037 45.7 9.6 68 113-181 794-863 (1463)
22 KOG0161 Myosin class II heavy 68.3 16 0.00035 47.5 8.4 49 104-152 762-817 (1930)
23 KOG0164 Myosin class I heavy c 66.8 13 0.00028 43.8 6.6 48 135-188 697-744 (1001)
24 KOG0163 Myosin class VI heavy 48.7 52 0.0011 39.3 7.4 21 112-132 813-833 (1259)
25 PF08763 Ca_chan_IQ: Voltage g 41.4 30 0.00065 25.7 2.7 19 113-131 10-28 (35)
26 PF15157 IQ-like: IQ-like 40.9 24 0.00053 31.2 2.6 22 111-132 46-67 (97)
27 KOG0377 Protein serine/threoni 39.8 49 0.0011 37.3 5.3 34 132-169 15-48 (631)
28 KOG0165 Microtubule-associated 31.6 78 0.0017 37.9 5.5 22 112-133 943-964 (1023)
29 KOG4427 E3 ubiquitin protein l 28.0 1.7E+02 0.0037 35.3 7.3 22 134-155 30-51 (1096)
30 KOG0942 E3 ubiquitin protein l 27.9 1.4E+02 0.0031 36.4 6.9 21 133-153 28-48 (1001)
31 KOG1419 Voltage-gated K+ chann 24.6 40 0.00087 38.8 1.6 18 111-128 339-356 (654)
32 KOG0163 Myosin class VI heavy 20.7 1.2E+02 0.0027 36.4 4.4 19 135-153 814-832 (1259)
No 1
>PF13178 DUF4005: Protein of unknown function (DUF4005)
Probab=99.55 E-value=8.3e-15 Score=130.02 Aligned_cols=76 Identities=47% Similarity=0.583 Sum_probs=56.3
Q ss_pred CcCcCCCccccccccccCCCCCCcccccCCCCCCCCCCCCcccChhhHhhhccCCCCCCCCCCcC---CCCccccccCCC
Q 008211 449 STDDQISNDNQKASQRRSSLPAKIDVQENGLHSTPKVPSYMAPTESAKAKLRGQGSPRLAHDGID---KNGTTRRHSLPS 525 (573)
Q Consensus 449 ~~~~~~~~~n~k~~~r~~s~~~~~~~~~~~~~~~p~~PsyMa~TeSakAk~r~q~spr~~~d~~e---~~~~~rr~slp~ 525 (573)
+.+......+++...|+++|. . ||+|||+|||||||+|+|++||++++..| ....++|||||.
T Consensus 12 ~~~~~~~~s~~~~~~~~~s~~-~-------------~PsYMa~TeSakAK~RsqSaPrqR~~~~~~~~~~~~~kR~S~~~ 77 (102)
T PF13178_consen 12 SSSSPSRSSPQKSSCRRSSFG-S-------------LPSYMAATESAKAKARSQSAPRQRPGTPERAEKQSSKKRLSLPG 77 (102)
T ss_pred CCCCcccCCCcccccccCcCC-C-------------CCCccchhhhhhhhhhccCCcccCCCccccccccccccccccCC
Confidence 334444445555555555554 2 99999999999999999999999999864 456789999997
Q ss_pred CC-CCCCCCCCCCc
Q 008211 526 ST-SSKLSSLSPRV 538 (573)
Q Consensus 526 ~~-n~~~~~~spr~ 538 (573)
+. ++...+++++.
T Consensus 78 ~~~~~~~~~~~~~~ 91 (102)
T PF13178_consen 78 SSNSGSSSSRSPRT 91 (102)
T ss_pred CCCCCcCCCCCCcc
Confidence 44 46666667665
No 2
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.82 E-value=4.2e-05 Score=89.10 Aligned_cols=67 Identities=31% Similarity=0.310 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhHHHHHhhh-hhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhh
Q 008211 111 HEEAATKAQAAFRGYLARRAFR-TLKGIIRLQAVIRGHLVRRQAVITLRCLLGIVKFQALARGRRVRYSDIG 181 (573)
Q Consensus 111 ee~AAI~IQaafRGylaRr~y~-~lkaiIrLQAlvRG~lvRRq~~~tlr~~qAaVrIQa~iRgrrvR~~~eg 181 (573)
...+++.||+.||||++|+.|. .+++++.||+++||+++|+. ++ ...|++.||..+|++..|+.|..
T Consensus 672 l~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~---~~-~~~aai~~q~~~r~~~~r~~y~~ 739 (862)
T KOG0160|consen 672 LSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRE---TE-REAAAIGIQKECRSYLNRRRYRA 739 (862)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh---hH-HHHHHHHhHHHHHHHHHHHHHHH
Confidence 3577888999999999999999 88999999999999999992 34 77899999999999999998863
No 3
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.79 E-value=2.4e-05 Score=50.55 Aligned_cols=21 Identities=43% Similarity=0.765 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhHHHHHhhh
Q 008211 112 EEAATKAQAAFRGYLARRAFR 132 (573)
Q Consensus 112 e~AAI~IQaafRGylaRr~y~ 132 (573)
+.|||+||++||||++|+.|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 468999999999999999885
No 4
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.36 E-value=0.00044 Score=80.86 Aligned_cols=76 Identities=24% Similarity=0.181 Sum_probs=66.4
Q ss_pred cchhhcccchHHhhHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhh
Q 008211 97 TTNLSSQEVPDRIRHEEAATKAQAAFRGYLARRAFRTLKGIIRLQAVIRGHLVRRQAVITLRCLLGIVKFQALARGRRVR 176 (573)
Q Consensus 97 ~~~~~ar~~~e~lree~AAI~IQaafRGylaRr~y~~lkaiIrLQAlvRG~lvRRq~~~tlr~~qAaVrIQa~iRgrrvR 176 (573)
.+++.+|.. +++...+++.||+.+||+++|+......++|.||..||++..|++| .....+++.||+.+|++.+|
T Consensus 683 ~r~~~~r~~--f~~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y---~~~~~~~~~~qs~~r~~~~r 757 (862)
T KOG0160|consen 683 IRGYLARKK--FLQLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRY---RALIPASITIQSGVRAMLAR 757 (862)
T ss_pred HHHHHHHHH--HHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 467777776 4778899999999999999998444567899999999999999998 77788999999999999999
Q ss_pred h
Q 008211 177 Y 177 (573)
Q Consensus 177 ~ 177 (573)
.
T Consensus 758 ~ 758 (862)
T KOG0160|consen 758 N 758 (862)
T ss_pred c
Confidence 7
No 5
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.28 E-value=0.00024 Score=48.06 Aligned_cols=22 Identities=50% Similarity=0.771 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhHHHHHhhh
Q 008211 111 HEEAATKAQAAFRGYLARRAFR 132 (573)
Q Consensus 111 ee~AAI~IQaafRGylaRr~y~ 132 (573)
++.||++||+.||||++|+.|.
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5689999999999999999884
No 6
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.88 E-value=0.0008 Score=79.13 Aligned_cols=72 Identities=29% Similarity=0.329 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHhHHHHHhhh-hhhHHHHHHHHHhHHHHHHHHHHH-------HHHhhhHHHHHHHHhhhhhhhhhhh
Q 008211 110 RHEEAATKAQAAFRGYLARRAFR-TLKGIIRLQAVIRGHLVRRQAVIT-------LRCLLGIVKFQALARGRRVRYSDIG 181 (573)
Q Consensus 110 ree~AAI~IQaafRGylaRr~y~-~lkaiIrLQAlvRG~lvRRq~~~t-------lr~~qAaVrIQa~iRgrrvR~~~eg 181 (573)
.-..||..||..||||+.|+.|+ .+..+|+||+.+||+.+|++|..- -...-++-++|+.+|++..|...+.
T Consensus 808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~ 887 (975)
T KOG0520|consen 808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEE 887 (975)
T ss_pred cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhc
Confidence 34589999999999999999999 889999999999999999999521 1244667788999999888876654
No 7
>PTZ00014 myosin-A; Provisional
Probab=96.88 E-value=0.0015 Score=76.92 Aligned_cols=40 Identities=28% Similarity=0.403 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhHHHHHhhh-hhhHHHHHHHHHhHHHHHHH
Q 008211 113 EAATKAQAAFRGYLARRAFR-TLKGIIRLQAVIRGHLVRRQ 152 (573)
Q Consensus 113 ~AAI~IQaafRGylaRr~y~-~lkaiIrLQAlvRG~lvRRq 152 (573)
.+|++||++||||++|+.|+ .+.++++||+.+||+++++.
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47889999999999999999 67899999999999998875
No 8
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.49 E-value=0.0072 Score=69.11 Aligned_cols=58 Identities=22% Similarity=0.240 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhHHHHHhhh-hhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhh
Q 008211 112 EEAATKAQAAFRGYLARRAFR-TLKGIIRLQAVIRGHLVRRQAVITLRCLLGIVKFQALARGRRVRYSDI 180 (573)
Q Consensus 112 e~AAI~IQaafRGylaRr~y~-~lkaiIrLQAlvRG~lvRRq~~~tlr~~qAaVrIQa~iRgrrvR~~~e 180 (573)
-.-|+.||++||||++|..|+ ++.+++.|+ ++|.+.++- .+..||.++|+++.++.|.
T Consensus 696 ~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~ks----------~v~el~~~~rg~k~~r~yg 754 (1001)
T KOG0164|consen 696 PSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLKS----------YVQELQRRFRGAKQMRDYG 754 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----------HHHHHHHHHHhhhhccccC
Confidence 467999999999999999999 555555556 888655444 3467889999988877664
No 9
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=95.77 E-value=0.012 Score=37.89 Aligned_cols=19 Identities=37% Similarity=0.494 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhHHHHHHHH
Q 008211 135 KGIIRLQAVIRGHLVRRQA 153 (573)
Q Consensus 135 kaiIrLQAlvRG~lvRRq~ 153 (573)
++++.||++|||+++|++|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5788889999999988876
No 10
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=95.57 E-value=0.025 Score=69.07 Aligned_cols=75 Identities=27% Similarity=0.263 Sum_probs=53.2
Q ss_pred cccchHHhh---HHHHHHHHHHHHHhHHHHHhhh-hhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 008211 102 SQEVPDRIR---HEEAATKAQAAFRGYLARRAFR-TLKGIIRLQAVIRGHLVRRQAVITLRCLLGIVKFQALARGRRVRY 177 (573)
Q Consensus 102 ar~~~e~lr---ee~AAI~IQaafRGylaRr~y~-~lkaiIrLQAlvRG~lvRRq~~~tlr~~qAaVrIQa~iRgrrvR~ 177 (573)
....+|..| ....|+.||++|||++.|++|. ..+.+..+|...+|.++++.+ ..-.-...++++|..+|...-|.
T Consensus 732 vL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~r~ 810 (1463)
T COG5022 732 VLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLV-DYELKWRLFIKLQPLLSLLGSRK 810 (1463)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhc-ccchHHHhHHHhhHHhHHHhhHH
Confidence 444556665 4689999999999999999998 777777778888887777554 22334455666666666655443
No 11
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=93.73 E-value=0.077 Score=35.82 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHhHHHHHHHH
Q 008211 134 LKGIIRLQAVIRGHLVRRQA 153 (573)
Q Consensus 134 lkaiIrLQAlvRG~lvRRq~ 153 (573)
..+++.||++|||+++|++|
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 35778888888888888876
No 12
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=93.36 E-value=0.2 Score=61.35 Aligned_cols=84 Identities=23% Similarity=0.289 Sum_probs=64.7
Q ss_pred cchhhccc----chHHhh-HHHHHHHHHHHHHhHHH---HHhhh--hhhHHHHHHHHHhHHHHHHHHHHH----HHHhhh
Q 008211 97 TTNLSSQE----VPDRIR-HEEAATKAQAAFRGYLA---RRAFR--TLKGIIRLQAVIRGHLVRRQAVIT----LRCLLG 162 (573)
Q Consensus 97 ~~~~~ar~----~~e~lr-ee~AAI~IQaafRGyla---Rr~y~--~lkaiIrLQAlvRG~lvRRq~~~t----lr~~qA 162 (573)
++|...|. ++..++ ..-..+-||..||||+. +..|. ..+.++.+|++.||+++|+.+... ..++.+
T Consensus 545 ~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~ 624 (1401)
T KOG2128|consen 545 ERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTK 624 (1401)
T ss_pred ccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Confidence 45554443 334444 45789999999999984 33444 678999999999999999988643 357899
Q ss_pred HHHHHHHHhhhhhhhhhh
Q 008211 163 IVKFQALARGRRVRYSDI 180 (573)
Q Consensus 163 aVrIQa~iRgrrvR~~~e 180 (573)
++.||+.+|.+..|..|.
T Consensus 625 ~i~iqs~~r~f~~r~~y~ 642 (1401)
T KOG2128|consen 625 IIKIQSKIRKFPNRKDYK 642 (1401)
T ss_pred HHHHHHHHHhcccchHHH
Confidence 999999999999988775
No 13
>PTZ00014 myosin-A; Provisional
Probab=93.01 E-value=0.2 Score=59.54 Aligned_cols=41 Identities=22% Similarity=0.170 Sum_probs=35.9
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhh
Q 008211 135 KGIIRLQAVIRGHLVRRQAVITLRCLLGIVKFQALARGRRVRYS 178 (573)
Q Consensus 135 kaiIrLQAlvRG~lvRRq~~~tlr~~qAaVrIQa~iRgrrvR~~ 178 (573)
..++.||++|||+++|++| ++..+++++||+.+|+++.++.
T Consensus 778 ~~~~~iq~~~r~~~~r~~~---~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKV---RKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 4577899999999999998 6668899999999999988764
No 14
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=90.35 E-value=0.49 Score=56.61 Aligned_cols=82 Identities=22% Similarity=0.220 Sum_probs=53.5
Q ss_pred cchhhcccchHHhhHHHHHHHHHHHHHhHHHHHhhh-h-------hh---HHHHHHHHHhHHHHHHHH------------
Q 008211 97 TTNLSSQEVPDRIRHEEAATKAQAAFRGYLARRAFR-T-------LK---GIIRLQAVIRGHLVRRQA------------ 153 (573)
Q Consensus 97 ~~~~~ar~~~e~lree~AAI~IQaafRGylaRr~y~-~-------lk---aiIrLQAlvRG~lvRRq~------------ 153 (573)
.++|..|... +-...-+|+||+++|||..|+.|. + .+ ..-++|.-+||+..|+.+
T Consensus 820 f~~yk~r~~~--l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~ 897 (975)
T KOG0520|consen 820 FRGYKQRKEF--LSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIED 897 (975)
T ss_pred hhhHHhhhhh--cccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHH
Confidence 3555555433 333466888888888888888886 1 11 223556677776543321
Q ss_pred ----------HHHHHHhhhHHHHHHHHhhhhhhhhhh
Q 008211 154 ----------VITLRCLLGIVKFQALARGRRVRYSDI 180 (573)
Q Consensus 154 ----------~~tlr~~qAaVrIQa~iRgrrvR~~~e 180 (573)
..+.+..+|+++||+.+|.+..+..|.
T Consensus 898 ~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyr 934 (975)
T KOG0520|consen 898 CYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYR 934 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 124566799999999999998886664
No 15
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=83.64 E-value=1.5 Score=48.58 Aligned_cols=35 Identities=29% Similarity=0.154 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHHHH
Q 008211 110 RHEEAATKAQAAFRGYLARRAFRTLKGIIRLQAVI 144 (573)
Q Consensus 110 ree~AAI~IQaafRGylaRr~y~~lkaiIrLQAlv 144 (573)
|-.+||+.||++||+|.||..-+.+-....+|++-
T Consensus 15 raikaAilIQkWYRr~~ARle~rrr~twqIFqslE 49 (631)
T KOG0377|consen 15 RAIKAAILIQKWYRRYEARLEARRRCTWQIFQSLE 49 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHh
Confidence 34689999999999999999888666666777763
No 16
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=82.95 E-value=2.2 Score=49.89 Aligned_cols=45 Identities=24% Similarity=0.465 Sum_probs=31.9
Q ss_pred hHHhhH---HHHHHHHHHHHHhHHHHHhhh-hhhHHHHHHHHHhHHHHHHHH
Q 008211 106 PDRIRH---EEAATKAQAAFRGYLARRAFR-TLKGIIRLQAVIRGHLVRRQA 153 (573)
Q Consensus 106 ~e~lre---e~AAI~IQaafRGylaRr~y~-~lkaiIrLQAlvRG~lvRRq~ 153 (573)
+|.+|+ .--|.+||++||.|++||.|. ++.-... ++-|..-||++
T Consensus 687 LEemRer~~d~~A~~IQkAWRrfv~rrky~k~ree~t~---ll~gKKeRRr~ 735 (1106)
T KOG0162|consen 687 LEEMRERKWDGMARRIQKAWRRFVARRKYEKMREEATK---LLLGKKERRRY 735 (1106)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcchHHHHHH
Confidence 445554 357999999999999999998 4444443 34566667665
No 17
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=81.73 E-value=2.2 Score=52.71 Aligned_cols=62 Identities=32% Similarity=0.419 Sum_probs=48.6
Q ss_pred HHHHHHHHhHHHHHhhhh--------hhHHHHHHHHHhHHHHHHHHHH----HHHHhhhHHHHHHHHhhhhhhhhhh
Q 008211 116 TKAQAAFRGYLARRAFRT--------LKGIIRLQAVIRGHLVRRQAVI----TLRCLLGIVKFQALARGRRVRYSDI 180 (573)
Q Consensus 116 I~IQaafRGylaRr~y~~--------lkaiIrLQAlvRG~lvRRq~~~----tlr~~qAaVrIQa~iRgrrvR~~~e 180 (573)
.+||+..|||..|-.+.. ...++.+|++|||++. |+. ......-++.+|+..|+...|..+.
T Consensus 539 ~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~ 612 (1401)
T KOG2128|consen 539 LRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDVYLDSAKKEVVKFQSLTRGALSRKKYS 612 (1401)
T ss_pred hhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHHHHHHhhHHHHHHHHHHHHHHHHhhHH
Confidence 455999999999988772 2467889999999995 221 2345577999999999999998775
No 18
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.95 E-value=1.9 Score=50.52 Aligned_cols=24 Identities=38% Similarity=0.463 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhh
Q 008211 109 IRHEEAATKAQAAFRGYLARRAFR 132 (573)
Q Consensus 109 lree~AAI~IQaafRGylaRr~y~ 132 (573)
.|.++||+.||+.||||++|+.|.
T Consensus 27 rrr~~aa~~iq~~lrsyl~Rkk~~ 50 (1096)
T KOG4427|consen 27 RRREAAALFIQRVLRSYLVRKKAQ 50 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999876
No 19
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=74.37 E-value=6 Score=51.15 Aligned_cols=39 Identities=33% Similarity=0.246 Sum_probs=20.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 008211 136 GIIRLQAVIRGHLVRRQAVITLRCLLGIVKFQALARGRR 174 (573)
Q Consensus 136 aiIrLQAlvRG~lvRRq~~~tlr~~qAaVrIQa~iRgrr 174 (573)
-|+.+||.|||+++|+.|........|+..||.-+|.|+
T Consensus 775 ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~ 813 (1930)
T KOG0161|consen 775 IITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYL 813 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444445555555555555553
No 20
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.01 E-value=3 Score=49.71 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=22.4
Q ss_pred HHhhHHHHHHHHHHHHHhHHHHHhhh
Q 008211 107 DRIRHEEAATKAQAAFRGYLARRAFR 132 (573)
Q Consensus 107 e~lree~AAI~IQaafRGylaRr~y~ 132 (573)
|..+++.+|++||+.||||++|++++
T Consensus 24 e~rk~e~~av~vQs~~Rg~~~r~~~~ 49 (1001)
T KOG0942|consen 24 EERKQEKNAVKVQSFWRGFRVRHNQK 49 (1001)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHH
Confidence 44457899999999999999999876
No 21
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=72.34 E-value=17 Score=45.66 Aligned_cols=68 Identities=22% Similarity=0.164 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhHHHHHhhh-hhhHHHHHH-HHHhHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhh
Q 008211 113 EAATKAQAAFRGYLARRAFR-TLKGIIRLQ-AVIRGHLVRRQAVITLRCLLGIVKFQALARGRRVRYSDIG 181 (573)
Q Consensus 113 ~AAI~IQaafRGylaRr~y~-~lkaiIrLQ-AlvRG~lvRRq~~~tlr~~qAaVrIQa~iRgrrvR~~~eg 181 (573)
.+++.||..||.+..|..|+ ....|+.|| .+++...++... +-...+.+.+.+|.++|....+..+..
T Consensus 794 ~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~-e~~~~~~~~~L~~~~~rs~~~~kr~~~ 863 (1463)
T COG5022 794 RLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETE-EVEFSLKAEVLIQKFGRSLKAKKRFSL 863 (1463)
T ss_pred HhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 45555555555555555555 444555555 333333333211 223345566667777777666655543
No 22
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=68.27 E-value=16 Score=47.53 Aligned_cols=49 Identities=39% Similarity=0.513 Sum_probs=38.5
Q ss_pred cchHHhhH---HHHHHHHHHHHHhHHHHHhhh----hhhHHHHHHHHHhHHHHHHH
Q 008211 104 EVPDRIRH---EEAATKAQAAFRGYLARRAFR----TLKGIIRLQAVIRGHLVRRQ 152 (573)
Q Consensus 104 ~~~e~lre---e~AAI~IQaafRGylaRr~y~----~lkaiIrLQAlvRG~lvRRq 152 (573)
.++|..|- ..-.+.+|+.||||++|+.|. -+.+++.||.-+|.++..+.
T Consensus 762 a~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~ 817 (1930)
T KOG0161|consen 762 AHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRT 817 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44555553 467788999999999999998 45689999999999865544
No 23
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=66.80 E-value=13 Score=43.80 Aligned_cols=48 Identities=19% Similarity=0.157 Sum_probs=33.2
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhHHhh
Q 008211 135 KGIIRLQAVIRGHLVRRQAVITLRCLLGIVKFQALARGRRVRYSDIGIQVQKIC 188 (573)
Q Consensus 135 kaiIrLQAlvRG~lvRRq~~~tlr~~qAaVrIQa~iRgrrvR~~~eg~~~q~~~ 188 (573)
.-++.||..|||+++|.+| .++..+++.|+ .+|.+.++-.. +.++..+
T Consensus 697 ~lvtllQK~~RG~~~R~ry---~rmka~~~ii~-wyR~~K~ks~v--~el~~~~ 744 (1001)
T KOG0164|consen 697 SLVTLLQKAWRGWLARQRY---RRMKASATIIR-WYRRYKLKSYV--QELQRRF 744 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHHHHHHHHHH--HHHHHHH
Confidence 3456789999999999988 66666666677 77777666443 2444444
No 24
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=48.68 E-value=52 Score=39.29 Aligned_cols=21 Identities=52% Similarity=0.705 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhHHHHHhhh
Q 008211 112 EEAATKAQAAFRGYLARRAFR 132 (573)
Q Consensus 112 e~AAI~IQaafRGylaRr~y~ 132 (573)
..+++++|+..|||++|++++
T Consensus 813 ae~v~k~Q~~~Rg~L~rkr~~ 833 (1259)
T KOG0163|consen 813 AECVLKAQRIARGYLARKRHR 833 (1259)
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 345566666666666666665
No 25
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=41.36 E-value=30 Score=25.70 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhHHHHHhh
Q 008211 113 EAATKAQAAFRGYLARRAF 131 (573)
Q Consensus 113 ~AAI~IQaafRGylaRr~y 131 (573)
=||.+||-+||-|..|+.-
T Consensus 10 YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 10 YATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4899999999999988853
No 26
>PF15157 IQ-like: IQ-like
Probab=40.87 E-value=24 Score=31.20 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhHHHHHhhh
Q 008211 111 HEEAATKAQAAFRGYLARRAFR 132 (573)
Q Consensus 111 ee~AAI~IQaafRGylaRr~y~ 132 (573)
.+.-+.+||++||-|++|..+.
T Consensus 46 Leskvkiiqrawre~lq~qd~~ 67 (97)
T PF15157_consen 46 LESKVKIIQRAWREYLQRQDPL 67 (97)
T ss_pred hhHHHHHHHHHHHHHHHhcCCc
Confidence 3566889999999999998765
No 27
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=39.81 E-value=49 Score=37.26 Aligned_cols=34 Identities=32% Similarity=0.267 Sum_probs=25.5
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHH
Q 008211 132 RTLKGIIRLQAVIRGHLVRRQAVITLRCLLGIVKFQAL 169 (573)
Q Consensus 132 ~~lkaiIrLQAlvRG~lvRRq~~~tlr~~qAaVrIQa~ 169 (573)
++.++++.||.++|+|.+|..+ +...++..+|++
T Consensus 15 raikaAilIQkWYRr~~ARle~----rrr~twqIFqsl 48 (631)
T KOG0377|consen 15 RAIKAAILIQKWYRRYEARLEA----RRRCTWQIFQSL 48 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHhHH
Confidence 3568999999999999999865 444555666654
No 28
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=31.65 E-value=78 Score=37.91 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhHHHHHhhhh
Q 008211 112 EEAATKAQAAFRGYLARRAFRT 133 (573)
Q Consensus 112 e~AAI~IQaafRGylaRr~y~~ 133 (573)
-.||+.||.++|||.+|+.|++
T Consensus 943 Kkaavviqkmirgfiarrkfqm 964 (1023)
T KOG0165|consen 943 KKAAVVIQKMIRGFIARRKFQM 964 (1023)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999984
No 29
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.05 E-value=1.7e+02 Score=35.28 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHhHHHHHHHHHH
Q 008211 134 LKGIIRLQAVIRGHLVRRQAVI 155 (573)
Q Consensus 134 lkaiIrLQAlvRG~lvRRq~~~ 155 (573)
-.+++.||+.+|||++|+.|..
T Consensus 30 ~~aa~~iq~~lrsyl~Rkk~~~ 51 (1096)
T KOG4427|consen 30 EAAALFIQRVLRSYLVRKKAQI 51 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999853
No 30
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.90 E-value=1.4e+02 Score=36.36 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=19.0
Q ss_pred hhhHHHHHHHHHhHHHHHHHH
Q 008211 133 TLKGIIRLQAVIRGHLVRRQA 153 (573)
Q Consensus 133 ~lkaiIrLQAlvRG~lvRRq~ 153 (573)
..++++.+|++|||+++|++.
T Consensus 28 ~e~~av~vQs~~Rg~~~r~~~ 48 (1001)
T KOG0942|consen 28 QEKNAVKVQSFWRGFRVRHNQ 48 (1001)
T ss_pred HhccchHHHHHHHHHHHHHHH
Confidence 568999999999999999886
No 31
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=24.59 E-value=40 Score=38.83 Aligned_cols=18 Identities=39% Similarity=0.440 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhHHHH
Q 008211 111 HEEAATKAQAAFRGYLAR 128 (573)
Q Consensus 111 ee~AAI~IQaafRGylaR 128 (573)
...||..||.+||.|.+-
T Consensus 339 r~pAA~LIQc~WR~yaa~ 356 (654)
T KOG1419|consen 339 RNPAASLIQCAWRYYAAE 356 (654)
T ss_pred cchHHHHHHHHHHHHhcc
Confidence 346777888888777643
No 32
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=20.68 E-value=1.2e+02 Score=36.40 Aligned_cols=19 Identities=26% Similarity=0.567 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhHHHHHHHH
Q 008211 135 KGIIRLQAVIRGHLVRRQA 153 (573)
Q Consensus 135 kaiIrLQAlvRG~lvRRq~ 153 (573)
..++++|+++|||++|+++
T Consensus 814 e~v~k~Q~~~Rg~L~rkr~ 832 (1259)
T KOG0163|consen 814 ECVLKAQRIARGYLARKRH 832 (1259)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 3577889999999999987
Done!