Query 008211
Match_columns 573
No_of_seqs 242 out of 1172
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 20:48:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008211.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008211hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ix7_C Myosin-5A; contractIle 99.1 2.1E-10 7.1E-15 90.2 7.7 53 110-163 3-56 (58)
2 2dfs_A Myosin-5A; myosin-V, in 99.0 4.3E-10 1.5E-14 132.5 10.1 79 97-180 778-859 (1080)
3 2dfs_A Myosin-5A; myosin-V, in 98.8 7.4E-09 2.5E-13 122.1 10.8 76 104-180 757-836 (1080)
4 1n2d_C IQ2 and IQ3 motifs from 98.8 5.8E-09 2E-13 78.8 5.9 42 112-153 3-47 (48)
5 1n2d_C IQ2 and IQ3 motifs from 98.3 7.8E-07 2.7E-11 67.0 6.4 46 133-179 2-47 (48)
6 2ix7_C Myosin-5A; contractIle 98.0 9.5E-06 3.2E-10 63.5 6.4 44 134-180 5-48 (58)
7 2l53_B CAM, voltage-gated sodi 97.4 8.2E-05 2.8E-09 51.9 3.1 24 109-132 3-26 (31)
8 2kxw_B Sodium channel protein 97.4 9.7E-05 3.3E-09 50.1 2.8 22 109-130 3-24 (27)
9 1wdc_A Scallop myosin; calcium 97.3 0.00036 1.2E-08 55.6 6.4 42 111-152 5-50 (64)
10 2bl0_A Major plasmodial myosin 97.3 0.00036 1.2E-08 55.6 5.5 39 113-151 5-47 (63)
11 1kk8_A Myosin heavy chain, str 97.1 0.00062 2.1E-08 78.6 7.3 52 102-153 766-824 (837)
12 1wdc_A Scallop myosin; calcium 97.0 0.0014 4.9E-08 52.1 6.7 47 134-180 6-52 (64)
13 2bl0_A Major plasmodial myosin 97.0 0.0012 4.3E-08 52.4 6.0 46 135-180 5-50 (63)
14 1i84_S Smooth muscle myosin he 96.4 0.0024 8.1E-08 76.3 5.6 52 102-153 779-837 (1184)
15 1kk8_A Myosin heavy chain, str 95.8 0.014 4.9E-07 67.4 8.0 48 133-180 778-825 (837)
16 3gn4_A Myosin-VI; unconvention 95.0 0.024 8.1E-07 52.8 5.2 33 111-143 44-77 (148)
17 1i84_S Smooth muscle myosin he 94.4 0.071 2.4E-06 63.7 8.4 48 133-180 791-838 (1184)
18 4anj_A Unconventional myosin-V 93.8 0.013 4.4E-07 69.3 0.5 79 100-179 760-843 (1052)
19 4dck_A Sodium channel protein 90.3 0.21 7.2E-06 47.3 4.1 28 105-132 123-150 (168)
20 1w7j_A Myosin VA; motor protei 87.5 0.33 1.1E-05 55.9 3.9 31 103-133 756-789 (795)
21 3gn4_A Myosin-VI; unconvention 86.3 3.5 0.00012 38.3 9.3 33 134-169 45-77 (148)
22 4anj_A Unconventional myosin-V 69.8 5.9 0.0002 47.0 6.7 44 134-180 774-817 (1052)
23 2l53_B CAM, voltage-gated sodi 55.9 8 0.00027 26.9 2.6 18 135-152 7-24 (31)
24 1w7j_A Myosin VA; motor protei 52.7 12 0.00041 43.1 5.0 18 136-153 770-787 (795)
25 2ycu_A Non muscle myosin 2C, a 36.1 8.5 0.00029 45.4 0.4 58 114-172 766-824 (995)
26 3dvk_B Voltage-dependent R-typ 32.2 21 0.00071 23.3 1.6 17 113-129 7-23 (23)
27 2f3y_B Voltage-dependent L-typ 28.1 36 0.0012 22.7 2.2 18 114-131 4-21 (26)
28 2be6_D Voltage-dependent L-typ 23.3 59 0.002 23.4 2.7 19 113-131 12-30 (37)
No 1
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=99.09 E-value=2.1e-10 Score=90.19 Aligned_cols=53 Identities=26% Similarity=0.359 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHhHHHHHhhh-hhhHHHHHHHHHhHHHHHHHHHHHHHHhhhH
Q 008211 110 RHEEAATKAQAAFRGYLARRAFR-TLKGIIRLQAVIRGHLVRRQAVITLRCLLGI 163 (573)
Q Consensus 110 ree~AAI~IQaafRGylaRr~y~-~lkaiIrLQAlvRG~lvRRq~~~tlr~~qAa 163 (573)
+.+.||++||++||||++|+.|+ .+.+++.||++|||+++|+.|. .++...|+
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~-~~r~~~aA 56 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAK-FLRRTKAA 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCc
Confidence 46789999999999999999999 7789999999999999999983 34444444
No 2
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.02 E-value=4.3e-10 Score=132.54 Aligned_cols=79 Identities=25% Similarity=0.159 Sum_probs=49.8
Q ss_pred cchhhcccchHHhhHHHHHHHHHHHHHhHHHHHhhh---hhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 008211 97 TTNLSSQEVPDRIRHEEAATKAQAAFRGYLARRAFR---TLKGIIRLQAVIRGHLVRRQAVITLRCLLGIVKFQALARGR 173 (573)
Q Consensus 97 ~~~~~ar~~~e~lree~AAI~IQaafRGylaRr~y~---~lkaiIrLQAlvRG~lvRRq~~~tlr~~qAaVrIQa~iRgr 173 (573)
+||+.+|..+.++ ..||++||++||||++|+.|. ..++++.||++|||+++|+.| .....+++.||+.+||+
T Consensus 778 ~Rg~l~Rk~~~~~--r~aai~IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~Rg~~~Rk~y---~~lr~aai~IQs~~Rg~ 852 (1080)
T 2dfs_A 778 IRGWLMRKKYMRM--RRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRY---QCMRDATIALQALLRGY 852 (1080)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhh--HHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 6777777665433 456666777777776666655 345666666666666666666 34446666666666666
Q ss_pred hhhhhhh
Q 008211 174 RVRYSDI 180 (573)
Q Consensus 174 rvR~~~e 180 (573)
++|+.+.
T Consensus 853 laRr~~~ 859 (1080)
T 2dfs_A 853 LVRNKYQ 859 (1080)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.82 E-value=7.4e-09 Score=122.12 Aligned_cols=76 Identities=28% Similarity=0.358 Sum_probs=67.2
Q ss_pred cchHHhhH---HHHHHHHHHHHHhHHHHHhhh-hhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhh
Q 008211 104 EVPDRIRH---EEAATKAQAAFRGYLARRAFR-TLKGIIRLQAVIRGHLVRRQAVITLRCLLGIVKFQALARGRRVRYSD 179 (573)
Q Consensus 104 ~~~e~lre---e~AAI~IQaafRGylaRr~y~-~lkaiIrLQAlvRG~lvRRq~~~tlr~~qAaVrIQa~iRgrrvR~~~ 179 (573)
..+|.+|. ..||++||++||||++|+.|+ ++.+++.||++|||+++|+++ ..++...|++.||+.||+|++|+.|
T Consensus 757 ~~LE~~R~~~l~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~-~~lr~~~AAi~IQs~~Rg~~~Rk~y 835 (1080)
T 2dfs_A 757 AYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYA-TFLRRTRAAIIIQKFQRMYVVRKRY 835 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcc-cccccchhHHHHHHHHhhHHHHHHH
Confidence 34555554 689999999999999999999 778999999999999999988 4567889999999999999999988
Q ss_pred h
Q 008211 180 I 180 (573)
Q Consensus 180 e 180 (573)
.
T Consensus 836 ~ 836 (1080)
T 2dfs_A 836 Q 836 (1080)
T ss_dssp H
T ss_pred H
Confidence 6
No 4
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.80 E-value=5.8e-09 Score=78.79 Aligned_cols=42 Identities=29% Similarity=0.460 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhHHHHHhhh-hhh--HHHHHHHHHhHHHHHHHH
Q 008211 112 EEAATKAQAAFRGYLARRAFR-TLK--GIIRLQAVIRGHLVRRQA 153 (573)
Q Consensus 112 e~AAI~IQaafRGylaRr~y~-~lk--aiIrLQAlvRG~lvRRq~ 153 (573)
..||+.||++||||++|+.|. .+. +++.||++|||+++|+.|
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 468999999999999999998 444 899999999999999876
No 5
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.35 E-value=7.8e-07 Score=67.00 Aligned_cols=46 Identities=24% Similarity=0.243 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhh
Q 008211 133 TLKGIIRLQAVIRGHLVRRQAVITLRCLLGIVKFQALARGRRVRYSD 179 (573)
Q Consensus 133 ~lkaiIrLQAlvRG~lvRRq~~~tlr~~qAaVrIQa~iRgrrvR~~~ 179 (573)
++.+++.||++|||+++|+++ ..++...|++.||+.+||+.+|+.|
T Consensus 2 ~r~a~i~iQ~~~Rg~l~R~~~-~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 2 ISQAIKYLQNNIKGFIIRQRV-NDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 357899999999999999998 3455667999999999999999865
No 6
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.01 E-value=9.5e-06 Score=63.45 Aligned_cols=44 Identities=30% Similarity=0.387 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhh
Q 008211 134 LKGIIRLQAVIRGHLVRRQAVITLRCLLGIVKFQALARGRRVRYSDI 180 (573)
Q Consensus 134 lkaiIrLQAlvRG~lvRRq~~~tlr~~qAaVrIQa~iRgrrvR~~~e 180 (573)
..+++.||+.|||+++|+.| +....+++.||+.+||+.+|+.+.
T Consensus 5 ~~aai~IQ~~~Rg~~~Rk~~---~~~r~aai~IQ~~~Rg~~aR~~~~ 48 (58)
T 2ix7_C 5 RAACIRIQKTIRGWLLRKRY---LCMQRAAITVQRYVRGYQARCYAK 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999998 667789999999999999999875
No 7
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=97.43 E-value=8.2e-05 Score=51.95 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhh
Q 008211 109 IRHEEAATKAQAAFRGYLARRAFR 132 (573)
Q Consensus 109 lree~AAI~IQaafRGylaRr~y~ 132 (573)
.+|+.||++||.+||+|+.|+.+.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr~~~ 26 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQRSLK 26 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Confidence 468899999999999999998754
No 8
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=97.37 E-value=9.7e-05 Score=50.08 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHhHHHHHh
Q 008211 109 IRHEEAATKAQAAFRGYLARRA 130 (573)
Q Consensus 109 lree~AAI~IQaafRGylaRr~ 130 (573)
.+++.||++||++||+|+.|+.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 3 KQEEVSAIVIQRAYRRYLLKQK 24 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4688999999999999999864
No 9
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.35 E-value=0.00036 Score=55.63 Aligned_cols=42 Identities=36% Similarity=0.485 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhHHHHHhhh-h---hhHHHHHHHHHhHHHHHHH
Q 008211 111 HEEAATKAQAAFRGYLARRAFR-T---LKGIIRLQAVIRGHLVRRQ 152 (573)
Q Consensus 111 ee~AAI~IQaafRGylaRr~y~-~---lkaiIrLQAlvRG~lvRRq 152 (573)
....++.||+.+|||++|+.|. . ..++..||..+|+++.++.
T Consensus 5 l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~ 50 (64)
T 1wdc_A 5 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3456777777777777777776 2 3455567777777766553
No 10
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.27 E-value=0.00036 Score=55.55 Aligned_cols=39 Identities=33% Similarity=0.388 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhHHHHHhhh-h---hhHHHHHHHHHhHHHHHH
Q 008211 113 EAATKAQAAFRGYLARRAFR-T---LKGIIRLQAVIRGHLVRR 151 (573)
Q Consensus 113 ~AAI~IQaafRGylaRr~y~-~---lkaiIrLQAlvRG~lvRR 151 (573)
..++.||+.+|||++|+.|. . ..++..||..+|+++.++
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr 47 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFK 47 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45666666666666666666 2 334455566666655544
No 11
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=97.08 E-value=0.00062 Score=78.64 Aligned_cols=52 Identities=31% Similarity=0.399 Sum_probs=41.1
Q ss_pred cccchHHhhH---HHHHHHHHHHHHhHHHHHhhh-h---hhHHHHHHHHHhHHHHHHHH
Q 008211 102 SQEVPDRIRH---EEAATKAQAAFRGYLARRAFR-T---LKGIIRLQAVIRGHLVRRQA 153 (573)
Q Consensus 102 ar~~~e~lre---e~AAI~IQaafRGylaRr~y~-~---lkaiIrLQAlvRG~lvRRq~ 153 (573)
....+|.+|. ..+|++||++||||++|+.|+ + +.+++.||+.|||+++|+.+
T Consensus 766 ~~~~LE~~r~~~l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~ 824 (837)
T 1kk8_A 766 VLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 824 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 3345555553 468999999999999999998 3 46888999999999988865
No 12
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.01 E-value=0.0014 Score=52.12 Aligned_cols=47 Identities=28% Similarity=0.127 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhh
Q 008211 134 LKGIIRLQAVIRGHLVRRQAVITLRCLLGIVKFQALARGRRVRYSDI 180 (573)
Q Consensus 134 lkaiIrLQAlvRG~lvRRq~~~tlr~~qAaVrIQa~iRgrrvR~~~e 180 (573)
...++.||+++||+++|+.|...+....|+..||.-+|++..++...
T Consensus 6 ~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w~ 52 (64)
T 1wdc_A 6 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh
Confidence 45688999999999999999777777889999999999998887553
No 13
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.97 E-value=0.0012 Score=52.38 Aligned_cols=46 Identities=15% Similarity=-0.038 Sum_probs=40.0
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhh
Q 008211 135 KGIIRLQAVIRGHLVRRQAVITLRCLLGIVKFQALARGRRVRYSDI 180 (573)
Q Consensus 135 kaiIrLQAlvRG~lvRRq~~~tlr~~qAaVrIQa~iRgrrvR~~~e 180 (573)
..++.||+++||+++|+.|...+....|+..||.-+|++..++...
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w~ 50 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNWA 50 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh
Confidence 4678999999999999999777777889999999999998877553
No 14
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.41 E-value=0.0024 Score=76.25 Aligned_cols=52 Identities=29% Similarity=0.362 Sum_probs=42.0
Q ss_pred cccchHHhhH---HHHHHHHHHHHHhHHHHHhhh-h---hhHHHHHHHHHhHHHHHHHH
Q 008211 102 SQEVPDRIRH---EEAATKAQAAFRGYLARRAFR-T---LKGIIRLQAVIRGHLVRRQA 153 (573)
Q Consensus 102 ar~~~e~lre---e~AAI~IQaafRGylaRr~y~-~---lkaiIrLQAlvRG~lvRRq~ 153 (573)
....+|.+|. ..+|++||++||||++|+.|. + +.+++.||+.||||+.++.+
T Consensus 779 ~l~~LE~~r~~~l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~ 837 (1184)
T 1i84_S 779 VLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW 837 (1184)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344555554 478999999999999999998 2 36899999999999998764
No 15
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=95.79 E-value=0.014 Score=67.40 Aligned_cols=48 Identities=27% Similarity=0.115 Sum_probs=40.9
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhh
Q 008211 133 TLKGIIRLQAVIRGHLVRRQAVITLRCLLGIVKFQALARGRRVRYSDI 180 (573)
Q Consensus 133 ~lkaiIrLQAlvRG~lvRRq~~~tlr~~qAaVrIQa~iRgrrvR~~~e 180 (573)
....++.||++|||+++|++|...+....|++.||+.+|+++.|+.+.
T Consensus 778 l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~ 825 (837)
T 1kk8_A 778 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 825 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchH
Confidence 445788999999999999999555555789999999999999998764
No 16
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=95.03 E-value=0.024 Score=52.75 Aligned_cols=33 Identities=24% Similarity=0.542 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhHHHHHhhh-hhhHHHHHHHH
Q 008211 111 HEEAATKAQAAFRGYLARRAFR-TLKGIIRLQAV 143 (573)
Q Consensus 111 ee~AAI~IQaafRGylaRr~y~-~lkaiIrLQAl 143 (573)
+..|+|+||+++|||++|+.|+ ...++.++.++
T Consensus 44 R~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L 77 (148)
T 3gn4_A 44 RAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTL 77 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3466666777777777776666 33555555444
No 17
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.37 E-value=0.071 Score=63.66 Aligned_cols=48 Identities=25% Similarity=0.073 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhh
Q 008211 133 TLKGIIRLQAVIRGHLVRRQAVITLRCLLGIVKFQALARGRRVRYSDI 180 (573)
Q Consensus 133 ~lkaiIrLQAlvRG~lvRRq~~~tlr~~qAaVrIQa~iRgrrvR~~~e 180 (573)
....++.||++|||+++|++|...+....|++.||+.||+|..++.+.
T Consensus 791 l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~~ 838 (1184)
T 1i84_S 791 ITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWP 838 (1184)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 446788999999999999999655556789999999999999987754
No 18
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=93.77 E-value=0.013 Score=69.34 Aligned_cols=79 Identities=13% Similarity=0.026 Sum_probs=50.8
Q ss_pred hhcccchHHhh---HHHHHHHHHHHHHhHHHHHhhh-hhhHHHHHHHHHhHHHHHHHHHHH-HHHhhhHHHHHHHHhhhh
Q 008211 100 LSSQEVPDRIR---HEEAATKAQAAFRGYLARRAFR-TLKGIIRLQAVIRGHLVRRQAVIT-LRCLLGIVKFQALARGRR 174 (573)
Q Consensus 100 ~~ar~~~e~lr---ee~AAI~IQaafRGylaRr~y~-~lkaiIrLQAlvRG~lvRRq~~~t-lr~~qAaVrIQa~iRgrr 174 (573)
......+|.+| ...+|+.||+ +|||++|+.|+ ++.+++.+|.+.|+...|+.+.-. .+...++.-|++.+|++.
T Consensus 760 ~~~~~~LE~~r~~~~~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~~~~w~~l~~~v~pll~~~~~~~ 838 (1052)
T 4anj_A 760 PGKFAEFDQIMKSDPDHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEAVSKGEELFTGVVPILVELDGDV 838 (1052)
T ss_dssp TTCHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCEEEEEEEEEEE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhhhhhHHHHHHHH
Confidence 33445556655 4577887775 79999999999 778899999999988876654111 112223333445555655
Q ss_pred hhhhh
Q 008211 175 VRYSD 179 (573)
Q Consensus 175 vR~~~ 179 (573)
.|+.|
T Consensus 839 ~~r~~ 843 (1052)
T 4anj_A 839 NGHKF 843 (1052)
T ss_dssp TTEEE
T ss_pred Hhhhh
Confidence 55544
No 19
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=90.28 E-value=0.21 Score=47.32 Aligned_cols=28 Identities=32% Similarity=0.369 Sum_probs=23.8
Q ss_pred chHHhhHHHHHHHHHHHHHhHHHHHhhh
Q 008211 105 VPDRIRHEEAATKAQAAFRGYLARRAFR 132 (573)
Q Consensus 105 ~~e~lree~AAI~IQaafRGylaRr~y~ 132 (573)
.....+++.||++||.+||.|+.|+.+.
T Consensus 123 t~~~~~e~~aA~~IQra~R~~~~r~~~~ 150 (168)
T 4dck_A 123 TLRRKHEEVSAMVIQRAFRRHLLQRSLK 150 (168)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4455678899999999999999888776
No 20
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=87.47 E-value=0.33 Score=55.93 Aligned_cols=31 Identities=26% Similarity=0.493 Sum_probs=24.3
Q ss_pred ccchHHhhH---HHHHHHHHHHHHhHHHHHhhhh
Q 008211 103 QEVPDRIRH---EEAATKAQAAFRGYLARRAFRT 133 (573)
Q Consensus 103 r~~~e~lre---e~AAI~IQaafRGylaRr~y~~ 133 (573)
...+|.+|. ..+|++||++||||++|+.|+.
T Consensus 756 ~~~LE~~r~~~l~~~~~~iQ~~~Rg~l~R~~~~~ 789 (795)
T 1w7j_A 756 VAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMR 789 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666654 4689999999999999999983
No 21
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=86.29 E-value=3.5 Score=38.32 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHH
Q 008211 134 LKGIIRLQAVIRGHLVRRQAVITLRCLLGIVKFQAL 169 (573)
Q Consensus 134 lkaiIrLQAlvRG~lvRRq~~~tlr~~qAaVrIQa~ 169 (573)
..++|.||+.+|||++|+++ .-...++.++-++
T Consensus 45 ~~~~i~iQktvR~~L~rkkh---kPRi~g~~kv~~L 77 (148)
T 3gn4_A 45 AEACIKMQKTIRMWLCKRRH---KPRIDGLVKVGTL 77 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHH
Confidence 35778888888888888887 3344444444443
No 22
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=69.82 E-value=5.9 Score=47.04 Aligned_cols=44 Identities=9% Similarity=0.039 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhh
Q 008211 134 LKGIIRLQAVIRGHLVRRQAVITLRCLLGIVKFQALARGRRVRYSDI 180 (573)
Q Consensus 134 lkaiIrLQAlvRG~lvRRq~~~tlr~~qAaVrIQa~iRgrrvR~~~e 180 (573)
+..++.+|..+||+++|++| .+...+++.||.+.|.++.|....
T Consensus 774 ~~~~~~~iq~~r~~l~r~~~---~k~~~~a~~i~~~~r~~~~r~~~~ 817 (1052)
T 4anj_A 774 PDHLAELVKRVNHWLICSRW---KKVQWCSLSVIKLKNKIKYRAEAV 817 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34455555578999999998 667788889998888877665543
No 23
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=55.91 E-value=8 Score=26.89 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=13.4
Q ss_pred hHHHHHHHHHhHHHHHHH
Q 008211 135 KGIIRLQAVIRGHLVRRQ 152 (573)
Q Consensus 135 kaiIrLQAlvRG~lvRRq 152 (573)
-+++.||..||+|+.|+.
T Consensus 7 ~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 7 VSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 367778888888887763
No 24
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=52.75 E-value=12 Score=43.13 Aligned_cols=18 Identities=44% Similarity=0.741 Sum_probs=9.0
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 008211 136 GIIRLQAVIRGHLVRRQA 153 (573)
Q Consensus 136 aiIrLQAlvRG~lvRRq~ 153 (573)
.++.||+.|||+++|++|
T Consensus 770 ~~~~iQ~~~Rg~l~R~~~ 787 (795)
T 1w7j_A 770 ACIRIQKTIRGWLMRKKY 787 (795)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555544
No 25
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=36.08 E-value=8.5 Score=45.38 Aligned_cols=58 Identities=12% Similarity=0.015 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhHHHHHhhh-hhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 008211 114 AATKAQAAFRGYLARRAFR-TLKGIIRLQAVIRGHLVRRQAVITLRCLLGIVKFQALARG 172 (573)
Q Consensus 114 AAI~IQaafRGylaRr~y~-~lkaiIrLQAlvRG~lvRRq~~~tlr~~qAaVrIQa~iRg 172 (573)
-|..++.+||+.+++..++ ...+++.||+++||+..++... .........+||+.++.
T Consensus 766 ~a~~Ll~WIr~k~a~l~~r~~~~sl~~IQ~~ir~f~~fr~~e-kpp~~~ek~rLeal~~~ 824 (995)
T 2ycu_A 766 RANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTE-KPPKGQEVSELEAIYNS 824 (995)
T ss_dssp HHHHHHHHTTTTTCCCSCHHHHHHHHHHHHHHHHHTTHHHHT-HHHHHHHHHHHCSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHH
Confidence 3556777888888877777 6678999999999988776552 11122334455555544
No 26
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=32.20 E-value=21 Score=23.28 Aligned_cols=17 Identities=12% Similarity=0.083 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhHHHHH...
Q 008211 113 EAATKAQAAFRGYLARR... 129 (573)
Q Consensus 113 ~AAI~IQaafRGylaRr... 129 (573)
=|+..||-.||.+..|+
T Consensus 7 YA~llI~d~~r~~k~r~... 23 (23)
T 3dvk_B 7 YAAMMIMDYYKQSKVKKxxx 26 (26)
T ss_dssp HHHHHHHHHHHHHHHTC...
T ss_pred HHHHHHHHHHHHHhccC...
Confidence 47899999999887653
No 27
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=28.12 E-value=36 Score=22.71 Aligned_cols=18 Identities=28% Similarity=0.305 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhHHHHHhh
Q 008211 114 AATKAQAAFRGYLARRAF 131 (573)
Q Consensus 114 AAI~IQaafRGylaRr~y 131 (573)
|...||-+||.|..|+.-
T Consensus 4 at~LIqdyfRkfkkrke~ 21 (26)
T 2f3y_B 4 ATFLIQEYFRKFKKRKEQ 21 (26)
T ss_pred hhhhHHHHHHHHHHhHHh
Confidence 556899999999888753
No 28
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=23.30 E-value=59 Score=23.37 Aligned_cols=19 Identities=26% Similarity=0.242 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhHHHHHhh
Q 008211 113 EAATKAQAAFRGYLARRAF 131 (573)
Q Consensus 113 ~AAI~IQaafRGylaRr~y 131 (573)
=|.-.||-+||.|..|+.-
T Consensus 12 YatfLIQdyFRkfkkrke~ 30 (37)
T 2be6_D 12 YATFLIQEYFRKFKKRKEQ 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4678899999999988864
Done!