BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008212
(573 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 109 IRHEEAATKAQAAFRGYLARRAFRTLK-GIIRLQAVIRGHLVRRQAVITLR 158
+R AA Q R Y+ R+ ++ ++ I LQA++RG+LVR + + LR
Sbjct: 813 LRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLR 863
>pdb|1YVH|A Chain A, Crystal Structure Of The C-Cbl Tkb Domain In Complex With
The Aps Ptyr-618 Phosphopeptide
pdb|3BUM|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Sprouty2
pdb|3BUN|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Sprouty4
pdb|3BUO|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Egf Receptor'
pdb|3BUO|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Egf Receptor'
pdb|3BUW|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Syk
pdb|3BUW|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Syk
pdb|3BUX|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In C-Met
pdb|3BUX|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In C-Met
pdb|3OB1|B Chain B, Crystal Structure Of C-Cbl Tkb Domain In Complex With
Double Phosphorylated Spry2 Peptide
pdb|3OB2|B Chain B, Crystal Structure Of C-Cbl Tkb Domain In Complex With
Double Phosphorylated Egfr Peptide
pdb|3PLF|B Chain B, Reverse Binding Mode Of Metrd Peptide Complexed With C-Cbl
Tkb Domain
pdb|3PLF|D Chain D, Reverse Binding Mode Of Metrd Peptide Complexed With C-Cbl
Tkb Domain
Length = 329
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 330 EHAQSDIEKVKRNTRKVPNSVKEASERLEVDNEKPKRSLKKAS 372
E+ + +E + + T++ + KE ER+ +N +P+R+L K S
Sbjct: 91 EYFRVFMENLMKKTKQTISLFKEGKERMYEENSQPRRNLTKLS 133
>pdb|2CBL|A Chain A, N-Terminal Domain Of Cbl In Complex With Its Binding Site
On Zap-70
Length = 305
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 330 EHAQSDIEKVKRNTRKVPNSVKEASERLEVDNEKPKRSLKKAS 372
E+ + +E + + T++ + KE ER+ +N +P+R+L K S
Sbjct: 67 EYFRVFMENLMKKTKQTISLFKEGKERMYEENSQPRRNLTKLS 109
>pdb|1B47|A Chain A, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
pdb|1B47|B Chain B, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
pdb|1B47|C Chain C, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
Length = 304
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 330 EHAQSDIEKVKRNTRKVPNSVKEASERLEVDNEKPKRSLKKAS 372
E+ + +E + + T++ + KE ER+ +N +P+R+L K S
Sbjct: 67 EYFRVFMENLMKKTKQTISLFKEGKERMYEENSQPRRNLTKLS 109
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 330 EHAQSDIEKVKRNTRKVPNSVKEASERLEVDNEKPKRSLKKAS 372
E+ + +E + + T++ + KE ER+ +N +P+R+L K S
Sbjct: 67 EYFRVFMENLMKKTKQTISLFKEGKERMYEENSQPRRNLTKLS 109
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 330 EHAQSDIEKVKRNTRKVPNSVKEASERLEVDNEKPKRSLKKAS 372
E+ + +E + + T++ + KE ER+ +N +P+R+L K S
Sbjct: 69 EYFRVFMENLMKKTKQTISLFKEGKERMYEENSQPRRNLTKLS 111
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 330 EHAQSDIEKVKRNTRKVPNSVKEASERLEVDNEKPKRSLKKAS 372
E+ + +E + + T++ + KE ER+ +N +P+R+L K S
Sbjct: 69 EYFRVFMENLMKKTKQTISLFKEGKERMYEENSQPRRNLTKLS 111
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 330 EHAQSDIEKVKRNTRKVPNSVKEASERLEVDNEKPKRSLKKAS 372
E+ + +E + + T++ + KE ER+ +N +P+R+L K S
Sbjct: 67 EYFRVFMENLMKKTKQTISLFKEGKERMYEENSQPRRNLTKLS 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.125 0.345
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,879,026
Number of Sequences: 62578
Number of extensions: 496264
Number of successful extensions: 1059
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1047
Number of HSP's gapped (non-prelim): 25
length of query: 573
length of database: 14,973,337
effective HSP length: 104
effective length of query: 469
effective length of database: 8,465,225
effective search space: 3970190525
effective search space used: 3970190525
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)