BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008213
         (573 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9LK32|Y3721_ARATH Uncharacterized protein At3g27210 OS=Arabidopsis thaliana GN=Y-2
           PE=1 SV=1
          Length = 234

 Score = 37.0 bits (84), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 22/32 (68%)

Query: 99  EDAWFDSVSILDSDSDDDFISVHGDGFPVAGN 130
           ++ +FDS   L SDSDDDF SV+GD  P  GN
Sbjct: 82  DETFFDSQPWLQSDSDDDFHSVNGDFTPSLGN 113


>sp|P20910|MYCO_STRCI Mycolysin OS=Streptomyces cacaoi GN=npr PE=1 SV=1
          Length = 550

 Score = 34.3 bits (77), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 11/110 (10%)

Query: 59  LDFEKGATTTCRRSEVTNSAFHLTQMQWHLSQVDANVICQEDAWFDSVSILDSDSDDDFI 118
           L +++G+T+TC  S   +       +QW+    D       D   D V + DSD D    
Sbjct: 348 LWWDRGSTSTCWTSNQRDGRCTPITVQWYPGSTDGTYWTNRD---DKVHLADSDPDSGHT 404

Query: 119 SVHGDGFPVAGNP-------IGNISSSHMLQYESSSC-FMDGKGKYEEYH 160
           +VH  G  + G         + N S  ++ +  S++C + +G      +H
Sbjct: 405 TVHEAGHSLMGKLYNGWWPYVTNCSPHYINRTSSTTCGWTEGFADAVAFH 454


>sp|A4XZJ1|LPTD_PSEMY LPS-assembly protein LptD OS=Pseudomonas mendocina (strain ymp)
           GN=lptD PE=3 SV=1
          Length = 938

 Score = 34.3 bits (77), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 55/144 (38%), Gaps = 33/144 (22%)

Query: 397 LGDSDGEGMSLV--LYFKVSENFEKVISPQYQESIKKLVEDEMEKVRGFAKDSIVPFRER 454
           LG S   G SL    YF ++ N++  + P Y      L+E E              FR  
Sbjct: 324 LGTSSSNGFSLQTPYYFNLAPNYDATLYPTYMAKRGLLMEGE--------------FRYL 369

Query: 455 LKIMAGLVNPEDLNMSSAEKKLVNAYNEKPVLSRPQHEF--------------YKGPNYF 500
            +   G V    LN    E+KL + Y ++  +   QH+                  P YF
Sbjct: 370 TESSEGQVGGAWLNDQEDERKLQSEYEDQRWMYSWQHKQGLNSRLLAEVDYTDISDPYYF 429

Query: 501 E---IDLDIHRFSYISRKGFEAFR 521
           +    DL I   SY++++G   +R
Sbjct: 430 QDLDTDLGIETQSYVNQRGTLTYR 453


>sp|Q8TCD6|PHOP2_HUMAN Pyridoxal phosphate phosphatase PHOSPHO2 OS=Homo sapiens
           GN=PHOSPHO2 PE=1 SV=1
          Length = 241

 Score = 33.5 bits (75), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 8/67 (11%)

Query: 301 FVIPCSTGEKL--------TPGCWAEIPPSTFKLRGETYFKDKRKSPAPEHSPFTPIGVD 352
           +++ C+  +KL          G W E     FK  G+   ++     A    PFTP  V+
Sbjct: 21  WIVQCAPNKKLPIELRDSYRKGFWTEFMGRVFKYLGDKGVREHEMKRAVTSLPFTPGMVE 80

Query: 353 LFNCPRK 359
           LFN  RK
Sbjct: 81  LFNFIRK 87


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.135    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 230,728,605
Number of Sequences: 539616
Number of extensions: 10525082
Number of successful extensions: 27027
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 27020
Number of HSP's gapped (non-prelim): 15
length of query: 573
length of database: 191,569,459
effective HSP length: 123
effective length of query: 450
effective length of database: 125,196,691
effective search space: 56338510950
effective search space used: 56338510950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)