Query 008213
Match_columns 573
No_of_seqs 150 out of 235
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 20:51:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008213.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008213hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4day_C Fanconi anemia group M 9.8 72 0.0025 23.6 0.3 19 525-543 14-32 (37)
2 1h1y_A D-ribulose-5-phosphate 9.2 4.1E+02 0.014 24.7 5.4 64 454-535 6-73 (228)
3 3bqa_A Sensor protein PHOQ; hi 7.5 1.3E+02 0.0044 28.1 1.1 37 490-527 68-104 (148)
4 2h0e_A Transthyretin-like prot 7.2 1.9E+02 0.0065 25.9 2.0 28 71-98 21-51 (121)
5 2k47_A Phosphoprotein, P prote 5.6 98 0.0033 26.0 -0.7 16 112-127 32-47 (79)
6 3ovp_A Ribulose-phosphate 3-ep 5.3 9.5E+02 0.032 22.7 5.9 26 454-479 4-29 (228)
7 1rpx_A Protein (ribulose-phosp 5.2 9.7E+02 0.033 21.8 5.8 24 453-476 9-32 (230)
8 3ho7_A OXYR; beta-alpha-barrel 4.7 8.7E+02 0.03 20.5 4.8 46 500-553 40-85 (232)
9 2dgb_A Hypothetical protein PU 4.7 4.6E+02 0.016 21.4 2.8 42 498-544 42-84 (84)
10 2zou_A Spondin-1; beta-sandwic 4.5 3.1E+02 0.011 24.6 1.8 25 531-555 54-81 (149)
No 1
>4day_C Fanconi anemia group M protein; OB fold, protein binding-hydrolase complex; 3.30A {Homo sapiens}
Probab=9.79 E-value=72 Score=23.58 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=14.7
Q ss_pred cceEEEEEEEeecCCCCCc
Q 008213 525 ANGILDVGLTIQAQKPEEL 543 (573)
Q Consensus 525 k~LVVDmGFvIEGqteEEL 543 (573)
=.+..|+||.++...+|.+
T Consensus 14 FSVnFDLGf~~~dSDde~~ 32 (37)
T 4day_C 14 FSVTFDLGFCSPDSDDEIL 32 (37)
T ss_pred EEEEeccccccCCcchhhh
Confidence 3579999999998766554
No 2
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=9.21 E-value=4.1e+02 Score=24.66 Aligned_cols=64 Identities=20% Similarity=0.413 Sum_probs=38.9
Q ss_pred ccceeeeccCCCcccchhHHHHHHHhhCCcceeecCccceecCCCeEEEEE-ecc---cchHHHHHHHHHHHhhhcceEE
Q 008213 454 RLKIMAGLVNPEDLNMSSAEKKLVNAYNEKPVLSRPQHEFYKGPNYFEIDL-DIH---RFSYISRKGFEAFRERLANGIL 529 (573)
Q Consensus 454 RFKLIp~VVngpwL~Lss~~r~l~qavn~KPvLirpq~~Y~rG~NYlEIDV-DIh---SFS~IARk~l~lv~g~lk~LVV 529 (573)
+-+|+|.|..+....|...++.+.+. |-+|+++|+ |-+ . +++.-..+..++..+ ...+
T Consensus 6 ~~~i~psi~a~d~~~l~~~i~~~~~~----------------Gad~i~l~i~Dg~fv~~-~~~~~~~~~~lr~~~-~~~~ 67 (228)
T 1h1y_A 6 AAKIAPSMLSSDFANLAAEADRMVRL----------------GADWLHMDIMDGHFVPN-LTIGAPVIQSLRKHT-KAYL 67 (228)
T ss_dssp CCEEEEBGGGSCGGGHHHHHHHHHHT----------------TCSEEEEEEEBSSSSSC-BCBCHHHHHHHHTTC-CSEE
T ss_pred CCeEEEEeeeCCHHHHHHHHHHHHHc----------------CCCEEEEEEecCCcCcc-hhhCHHHHHHHHhhc-CCcE
Confidence 55899999999987776555555432 556777775 321 1 111224444455554 4577
Q ss_pred EEEEEe
Q 008213 530 DVGLTI 535 (573)
Q Consensus 530 DmGFvI 535 (573)
|+.+.|
T Consensus 68 ~v~lmv 73 (228)
T 1h1y_A 68 DCHLMV 73 (228)
T ss_dssp EEEEES
T ss_pred EEEEEe
Confidence 888877
No 3
>3bqa_A Sensor protein PHOQ; histidine kinase sensor domain, ATP-binding, inner membrane, magnesium, membrane, metal-binding, nucleotide-binding; 2.00A {Escherichia coli} PDB: 3bq8_A 1yax_A
Probab=7.52 E-value=1.3e+02 Score=28.11 Aligned_cols=37 Identities=19% Similarity=0.386 Sum_probs=24.9
Q ss_pred ccceecCCCeEEEEEecccchHHHHHHHHHHHhhhcce
Q 008213 490 QHEFYKGPNYFEIDLDIHRFSYISRKGFEAFRERLANG 527 (573)
Q Consensus 490 q~~Y~rG~NYlEIDVDIhSFS~IARk~l~lv~g~lk~L 527 (573)
+..|-+.++|+|||.|++. |...-+.-..+..+++.+
T Consensus 68 ~~eWLkk~gf~Eidtd~~~-s~~~L~~~~~~q~~L~~~ 104 (148)
T 3bqa_A 68 QPDWLKSNGFHEIEADVND-TSLLLSGDHSIQQQLQEV 104 (148)
T ss_dssp CGGGSSSCEEEEEEEEHHH-HHHHHCSCHHHHHHHHHH
T ss_pred CHHHhcCCCcEEEecCcch-HHHHhcCCHHHHHHHHhh
Confidence 5668888999999999998 433333334555555543
No 4
>2h0e_A Transthyretin-like protein PUCM; beta sandwitch, hydrolase, HIU; 2.20A {Bacillus subtilis} PDB: 2h0f_A* 2h0j_A*
Probab=7.23 E-value=1.9e+02 Score=25.89 Aligned_cols=28 Identities=7% Similarity=0.045 Sum_probs=21.9
Q ss_pred cCcccccceeeccccccc---cccccccccc
Q 008213 71 RSEVTNSAFHLTQMQWHL---SQVDANVICQ 98 (573)
Q Consensus 71 ~~~~~~~~~hltq~~w~~---s~~d~~~~~~ 98 (573)
+.|+.++...|.+++|.. ..-|++|-|.
T Consensus 21 G~PAagv~V~L~~~~~~~l~~~~Tn~DGR~~ 51 (121)
T 2h0e_A 21 GKPAANVKIGLKRLGESIMKEVYTNNDGRVD 51 (121)
T ss_dssp TEECTTCEEEEEETTSCCCEEEECCTTSSCS
T ss_pred cCCCCCCEEEEEECCceEEEEEecCCCCCcc
Confidence 349999999999988864 3467788883
No 5
>2k47_A Phosphoprotein, P protein, M1; flexible tail, chaperone, cytoplasm, RNA replication, virion; NMR {Vesicular stomatitis indiana virus}
Probab=5.61 E-value=98 Score=26.05 Aligned_cols=16 Identities=50% Similarity=0.661 Sum_probs=13.3
Q ss_pred CCCcccccccCCCCCC
Q 008213 112 DSDDDFISVHGDGFPV 127 (573)
Q Consensus 112 d~d~~f~sv~~d~~~~ 127 (573)
.|.+||+||-||..++
T Consensus 32 sSr~Ef~SV~~~G~~~ 47 (79)
T 2k47_A 32 SSRGEFISVGGDGRMS 47 (79)
T ss_dssp CCHHHHHHHHCCSCCC
T ss_pred cCcCcEEEECCCcchh
Confidence 5788999999997554
No 6
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=5.31 E-value=9.5e+02 Score=22.70 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=21.0
Q ss_pred ccceeeeccCCCcccchhHHHHHHHh
Q 008213 454 RLKIMAGLVNPEDLNMSSAEKKLVNA 479 (573)
Q Consensus 454 RFKLIp~VVngpwL~Lss~~r~l~qa 479 (573)
+.||-|.|....+.+|....+.+.++
T Consensus 4 ~~~i~psil~~D~~~l~~~i~~l~~~ 29 (228)
T 3ovp_A 4 GCKIGPSILNSDLANLGAECLRMLDS 29 (228)
T ss_dssp CCEEEEBCTTSCGGGHHHHHHHHHHT
T ss_pred CcEeeeeheeCCchhHHHHHHHHHHc
Confidence 56889999999998888777776544
No 7
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=5.22 E-value=9.7e+02 Score=21.81 Aligned_cols=24 Identities=4% Similarity=0.152 Sum_probs=16.7
Q ss_pred cccceeeeccCCCcccchhHHHHH
Q 008213 453 ERLKIMAGLVNPEDLNMSSAEKKL 476 (573)
Q Consensus 453 eRFKLIp~VVngpwL~Lss~~r~l 476 (573)
...||+|.|..+.+..+....+.+
T Consensus 9 ~~~~i~p~i~a~d~~~~~~~i~~~ 32 (230)
T 1rpx_A 9 SDIIVSPSILSANFSKLGEQVKAI 32 (230)
T ss_dssp TSCEEEEBGGGSCGGGHHHHHHHH
T ss_pred CceEEEEEeecCCHHHHHHHHHHH
Confidence 466899999999876554444444
No 8
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=4.73 E-value=8.7e+02 Score=20.50 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=29.4
Q ss_pred EEEEEecccchHHHHHHHHHHHhhhcceEEEEEEEeecCCCCCccccccceeee
Q 008213 500 FEIDLDIHRFSYISRKGFEAFRERLANGILDVGLTIQAQKPEELPEQALCCLRL 553 (573)
Q Consensus 500 lEIDVDIhSFS~IARk~l~lv~g~lk~LVVDmGFvIEGqteEELPErLLG~vRL 553 (573)
++|.+..+... .+...+.+..+|+||+.......+|--..|+..++
T Consensus 40 v~i~~~~~~~~--------~~~~~l~~g~~Dl~i~~~~~~~~~l~~~~l~~~~~ 85 (232)
T 3ho7_A 40 LEIHVSEMQTS--------RCLASLLSGEIDMAIIASKAETEGLEDDLLYYEEF 85 (232)
T ss_dssp EEEEEEECCHH--------HHHHHHHHTSCSEEEESSCCCCTTEEEEEEEEEEE
T ss_pred cEEEEEeCCHH--------HHHHHHHcCCCCEEEEcCCCCCCCeEEEEecccCE
Confidence 66666666522 23444666789999998776666666566655444
No 9
>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A
Probab=4.71 E-value=4.6e+02 Score=21.38 Aligned_cols=42 Identities=24% Similarity=0.251 Sum_probs=22.3
Q ss_pred CeEEEEEecccchHHHHHHHHHHHhhhcceEEE-EEEEeecCCCCCcc
Q 008213 498 NYFEIDLDIHRFSYISRKGFEAFRERLANGILD-VGLTIQAQKPEELP 544 (573)
Q Consensus 498 NYlEIDVDIhSFS~IARk~l~lv~g~lk~LVVD-mGFvIEGqteEELP 544 (573)
.|||++++..+=......+-.+| ..+.+-||. .-+-++ +|||
T Consensus 42 K~~~l~~~~~~~~~a~~~v~~~~-~LLaNpVie~y~~~~~----~~~~ 84 (84)
T 2dgb_A 42 KVLEIVFPAENLLEAEEKAKAMG-ALLANPVMEVYALEAL----KELP 84 (84)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHH-HHHSCTTTEEEEEEEE----EEEC
T ss_pred EEEEEEecCCCHHHHHHHHHHHH-HHhCCccceEEEEEEe----cCCC
Confidence 57899998654122233455555 555444443 333333 6666
No 10
>2zou_A Spondin-1; beta-sandwich, extracellular protein, cell adhesion, extrace matrix, glycoprotein, secreted; 1.45A {Homo sapiens}
Probab=4.49 E-value=3.1e+02 Score=24.61 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=19.3
Q ss_pred EEEEeecCCCCCc---cccccceeeecc
Q 008213 531 VGLTIQAQKPEEL---PEQALCCLRLNK 555 (573)
Q Consensus 531 mGFvIEGqteEEL---PErLLG~vRLnk 555 (573)
.||+||++.+... +...+|.+.+..
T Consensus 54 ~GFllqAr~~~~~~~~~~~~vG~F~~~~ 81 (149)
T 2zou_A 54 RGFTLIALRENREGDKEEDHAGTFQIID 81 (149)
T ss_dssp SEEEEEEEETTCCSCSGGGBCSEEEESC
T ss_pred EEEEEEEEecCCccCCCCcceEEEEeCC
Confidence 5999999877654 567899998753
Done!