Query 008214
Match_columns 573
No_of_seqs 451 out of 3037
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 20:57:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008214.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008214hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5038 Ca2+-dependent lipid-b 100.0 2.5E-56 5.3E-61 478.2 38.6 451 66-569 218-696 (1227)
2 KOG1028 Ca2+-dependent phospho 100.0 6.6E-30 1.4E-34 263.9 23.7 224 257-537 162-393 (421)
3 KOG2059 Ras GTPase-activating 99.9 4.1E-23 9E-28 212.0 14.7 250 262-572 5-283 (800)
4 cd04016 C2_Tollip C2 domain pr 99.9 9.5E-22 2.1E-26 167.9 14.2 119 261-388 1-121 (121)
5 COG5038 Ca2+-dependent lipid-b 99.9 2.4E-19 5.3E-24 194.4 28.6 339 226-569 662-1165(1227)
6 cd04016 C2_Tollip C2 domain pr 99.8 2.2E-20 4.8E-25 159.4 14.4 113 448-564 2-121 (121)
7 cd08682 C2_Rab11-FIP_classI C2 99.8 1.5E-20 3.3E-25 163.7 13.4 119 264-387 1-126 (126)
8 cd08681 C2_fungal_Inn1p-like C 99.8 4.2E-20 9.2E-25 159.0 12.7 117 262-388 1-118 (118)
9 cd04042 C2A_MCTP_PRT C2 domain 99.8 9.3E-20 2E-24 157.5 14.7 121 263-390 1-121 (121)
10 cd04036 C2_cPLA2 C2 domain pre 99.8 1.8E-19 3.9E-24 155.2 14.6 116 264-388 2-117 (119)
11 cd08395 C2C_Munc13 C2 domain t 99.8 1.5E-19 3.2E-24 154.0 13.7 108 263-371 1-115 (120)
12 cd08391 C2A_C2C_Synaptotagmin_ 99.8 1.6E-19 3.4E-24 156.3 13.9 115 448-564 1-121 (121)
13 cd08375 C2_Intersectin C2 doma 99.8 2.5E-19 5.5E-24 157.2 15.2 119 259-388 12-135 (136)
14 cd08681 C2_fungal_Inn1p-like C 99.8 1.1E-19 2.3E-24 156.6 12.4 115 448-564 1-118 (118)
15 cd08379 C2D_MCTP_PRT_plant C2 99.8 2.3E-19 5.1E-24 154.1 14.3 116 263-384 1-125 (126)
16 cd08677 C2A_Synaptotagmin-13 C 99.8 9E-20 2E-24 152.9 10.9 108 256-366 8-118 (118)
17 cd08376 C2B_MCTP_PRT C2 domain 99.8 3.6E-19 7.8E-24 152.7 14.7 115 263-389 1-115 (116)
18 cd08682 C2_Rab11-FIP_classI C2 99.8 2.2E-19 4.8E-24 156.3 13.1 112 450-563 1-126 (126)
19 cd04022 C2A_MCTP_PRT_plant C2 99.8 2.7E-19 6E-24 155.9 13.5 121 263-389 1-126 (127)
20 cd04019 C2C_MCTP_PRT_plant C2 99.8 3.5E-19 7.5E-24 158.8 14.3 125 263-390 1-133 (150)
21 cd04036 C2_cPLA2 C2 domain pre 99.8 4.4E-19 9.6E-24 152.8 14.4 115 450-564 2-117 (119)
22 cd08379 C2D_MCTP_PRT_plant C2 99.8 4.1E-19 8.9E-24 152.6 14.0 109 449-560 1-125 (126)
23 cd04024 C2A_Synaptotagmin-like 99.8 3.7E-19 8E-24 155.6 13.9 123 262-388 1-128 (128)
24 cd08376 C2B_MCTP_PRT C2 domain 99.8 7.2E-19 1.6E-23 150.9 15.4 114 449-565 1-115 (116)
25 cd08375 C2_Intersectin C2 doma 99.8 7.7E-19 1.7E-23 154.2 15.5 118 446-565 13-136 (136)
26 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 8.4E-19 1.8E-23 152.1 13.8 121 263-386 1-122 (123)
27 cd04042 C2A_MCTP_PRT C2 domain 99.8 1.6E-18 3.4E-23 149.8 15.3 116 449-566 1-121 (121)
28 cd08381 C2B_PI3K_class_II C2 d 99.8 5.1E-19 1.1E-23 152.5 12.1 105 261-366 12-121 (122)
29 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.4E-18 3.1E-23 149.5 14.8 119 264-388 2-121 (121)
30 cd08381 C2B_PI3K_class_II C2 d 99.8 1.2E-18 2.6E-23 150.3 14.0 103 448-551 13-122 (122)
31 cd08400 C2_Ras_p21A1 C2 domain 99.8 2E-18 4.3E-23 150.0 15.4 122 261-390 3-124 (126)
32 cd04019 C2C_MCTP_PRT_plant C2 99.8 1E-18 2.2E-23 155.7 13.9 119 449-569 1-136 (150)
33 cd08391 C2A_C2C_Synaptotagmin_ 99.8 9.6E-19 2.1E-23 151.4 13.3 115 262-388 1-121 (121)
34 cd04024 C2A_Synaptotagmin-like 99.8 1.1E-18 2.3E-23 152.7 13.7 115 448-564 1-128 (128)
35 cd04028 C2B_RIM1alpha C2 domai 99.8 1.9E-18 4E-23 152.1 15.2 105 448-553 29-139 (146)
36 cd08678 C2_C21orf25-like C2 do 99.8 2.3E-18 5.1E-23 149.8 15.7 121 264-390 1-121 (126)
37 cd04028 C2B_RIM1alpha C2 domai 99.8 1.2E-18 2.6E-23 153.3 13.9 109 261-370 28-140 (146)
38 cd08677 C2A_Synaptotagmin-13 C 99.8 1.1E-18 2.5E-23 146.2 12.6 102 446-550 12-118 (118)
39 cd08393 C2A_SLP-1_2 C2 domain 99.8 9.9E-19 2.1E-23 151.6 12.0 110 258-367 11-125 (125)
40 KOG1030 Predicted Ca2+-depende 99.8 7.5E-19 1.6E-23 152.6 10.6 97 259-359 3-99 (168)
41 cd08678 C2_C21orf25-like C2 do 99.8 3.7E-18 8E-23 148.5 14.7 116 450-568 1-123 (126)
42 cd08393 C2A_SLP-1_2 C2 domain 99.8 2.6E-18 5.7E-23 149.0 13.6 105 447-551 14-125 (125)
43 cd04022 C2A_MCTP_PRT_plant C2 99.8 2.3E-18 4.9E-23 150.1 13.1 115 449-565 1-126 (127)
44 cd08387 C2A_Synaptotagmin-8 C2 99.8 1.8E-18 3.9E-23 150.2 12.4 110 258-367 12-123 (124)
45 cd08378 C2B_MCTP_PRT_plant C2 99.8 2.6E-18 5.7E-23 147.8 12.9 113 264-388 2-119 (121)
46 cd04029 C2A_SLP-4_5 C2 domain 99.8 2.5E-18 5.4E-23 148.9 12.7 110 257-366 10-124 (125)
47 cd08378 C2B_MCTP_PRT_plant C2 99.8 2.9E-18 6.2E-23 147.6 12.7 111 449-565 1-120 (121)
48 cd04029 C2A_SLP-4_5 C2 domain 99.8 5E-18 1.1E-22 147.1 13.9 105 447-551 14-125 (125)
49 cd04015 C2_plant_PLD C2 domain 99.8 6.6E-18 1.4E-22 152.2 15.1 122 261-388 6-157 (158)
50 cd04044 C2A_Tricalbin-like C2 99.8 4.3E-18 9.4E-23 147.9 13.3 122 261-390 1-124 (124)
51 cd04050 C2B_Synaptotagmin-like 99.8 4E-18 8.7E-23 143.2 12.6 102 449-554 1-104 (105)
52 cd08387 C2A_Synaptotagmin-8 C2 99.8 5E-18 1.1E-22 147.4 13.5 105 447-551 15-123 (124)
53 cd04015 C2_plant_PLD C2 domain 99.8 7.8E-18 1.7E-22 151.7 15.0 119 445-565 4-158 (158)
54 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 9.6E-18 2.1E-22 147.6 15.0 122 263-388 1-132 (133)
55 cd08392 C2A_SLP-3 C2 domain fi 99.8 8.2E-18 1.8E-22 145.9 14.1 105 447-551 14-128 (128)
56 cd08385 C2A_Synaptotagmin-1-5- 99.8 5.8E-18 1.3E-22 147.0 12.9 110 258-367 12-123 (124)
57 cd08377 C2C_MCTP_PRT C2 domain 99.8 1.4E-17 3E-22 143.6 15.0 118 262-388 1-118 (119)
58 cd08388 C2A_Synaptotagmin-4-11 99.8 8.7E-18 1.9E-22 146.2 13.5 111 257-367 11-127 (128)
59 cd04010 C2B_RasA3 C2 domain se 99.8 5.8E-18 1.3E-22 149.9 12.2 106 263-370 1-124 (148)
60 cd04046 C2_Calpain C2 domain p 99.8 2.2E-17 4.7E-22 143.6 15.4 123 260-390 1-123 (126)
61 cd08680 C2_Kibra C2 domain fou 99.8 5.3E-18 1.1E-22 145.7 11.1 110 257-366 9-124 (124)
62 cd08400 C2_Ras_p21A1 C2 domain 99.8 2.5E-17 5.4E-22 143.0 15.4 115 448-567 4-125 (126)
63 cd08385 C2A_Synaptotagmin-1-5- 99.8 1.8E-17 4E-22 143.9 14.5 105 447-551 15-123 (124)
64 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.4E-17 3.1E-22 143.3 13.7 113 450-564 2-121 (121)
65 cd04041 C2A_fungal C2 domain f 99.8 4.6E-18 9.9E-23 144.4 10.3 102 262-366 1-106 (111)
66 cd08395 C2C_Munc13 C2 domain t 99.8 1.3E-17 2.8E-22 142.1 12.6 104 449-553 1-113 (120)
67 cd08685 C2_RGS-like C2 domain 99.7 1.3E-17 2.8E-22 142.9 12.5 103 447-550 11-119 (119)
68 cd08392 C2A_SLP-3 C2 domain fi 99.7 1.3E-17 2.8E-22 144.7 12.4 110 257-366 10-127 (128)
69 cd04017 C2D_Ferlin C2 domain f 99.7 4.2E-17 9.2E-22 143.6 15.3 119 263-390 2-133 (135)
70 cd04030 C2C_KIAA1228 C2 domain 99.7 3.8E-17 8.2E-22 142.6 14.8 105 447-551 15-127 (127)
71 cd08680 C2_Kibra C2 domain fou 99.7 1.8E-17 3.9E-22 142.5 12.5 105 446-550 12-124 (124)
72 cd08386 C2A_Synaptotagmin-7 C2 99.7 2.3E-17 4.9E-22 143.6 13.0 111 257-367 11-124 (125)
73 cd08389 C2A_Synaptotagmin-14_1 99.7 1.6E-17 3.4E-22 143.8 11.9 110 257-367 11-123 (124)
74 cd04050 C2B_Synaptotagmin-like 99.7 1.7E-17 3.6E-22 139.5 11.6 99 263-367 1-101 (105)
75 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 3.9E-17 8.4E-22 140.9 14.0 118 264-387 2-120 (121)
76 cd04014 C2_PKC_epsilon C2 doma 99.7 4.4E-17 9.5E-22 143.0 14.5 115 261-389 3-129 (132)
77 cd08382 C2_Smurf-like C2 domai 99.7 4E-17 8.7E-22 141.2 13.9 118 264-386 2-122 (123)
78 cd08685 C2_RGS-like C2 domain 99.7 1.5E-17 3.4E-22 142.4 11.2 106 260-366 10-119 (119)
79 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 3E-17 6.5E-22 142.3 13.1 112 449-562 1-122 (123)
80 cd04031 C2A_RIM1alpha C2 domai 99.7 4.1E-17 8.9E-22 142.0 14.0 104 447-551 15-125 (125)
81 cd08373 C2A_Ferlin C2 domain f 99.7 6.7E-17 1.5E-21 140.9 14.9 116 268-392 2-119 (127)
82 cd04046 C2_Calpain C2 domain p 99.7 9.8E-17 2.1E-21 139.4 15.8 118 447-569 2-126 (126)
83 cd04043 C2_Munc13_fungal C2 do 99.7 6.2E-17 1.4E-21 141.0 14.5 117 263-389 2-121 (126)
84 cd08388 C2A_Synaptotagmin-4-11 99.7 8.9E-17 1.9E-21 139.8 15.2 105 447-551 15-127 (128)
85 cd04030 C2C_KIAA1228 C2 domain 99.7 2.8E-17 6.1E-22 143.4 11.9 109 258-366 12-126 (127)
86 cd04014 C2_PKC_epsilon C2 doma 99.7 9.6E-17 2.1E-21 140.9 15.3 116 447-567 3-131 (132)
87 cd04039 C2_PSD C2 domain prese 99.7 2.7E-17 5.8E-22 138.3 11.2 94 262-358 1-99 (108)
88 KOG1030 Predicted Ca2+-depende 99.7 1.7E-17 3.6E-22 144.3 9.6 93 446-541 4-97 (168)
89 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 6.8E-17 1.5E-21 146.1 14.0 109 445-553 24-139 (162)
90 cd08521 C2A_SLP C2 domain firs 99.7 3.8E-17 8.2E-22 141.8 11.6 109 258-366 10-123 (123)
91 cd04044 C2A_Tricalbin-like C2 99.7 8.4E-17 1.8E-21 139.8 13.6 118 448-566 2-124 (124)
92 cd08521 C2A_SLP C2 domain firs 99.7 7.2E-17 1.6E-21 140.0 13.2 104 447-550 13-123 (123)
93 cd08389 C2A_Synaptotagmin-14_1 99.7 1E-16 2.2E-21 138.7 13.9 105 447-552 15-124 (124)
94 cd08390 C2A_Synaptotagmin-15-1 99.7 7.4E-17 1.6E-21 139.9 13.1 111 257-367 9-122 (123)
95 cd08394 C2A_Munc13 C2 domain f 99.7 6.6E-17 1.4E-21 136.9 12.2 98 448-552 2-101 (127)
96 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 9.9E-17 2.1E-21 141.2 13.5 116 449-565 1-133 (133)
97 cd04027 C2B_Munc13 C2 domain s 99.7 1.2E-16 2.5E-21 139.2 13.6 115 263-386 2-127 (127)
98 cd04031 C2A_RIM1alpha C2 domai 99.7 6.5E-17 1.4E-21 140.7 11.8 107 259-366 13-124 (125)
99 cd04052 C2B_Tricalbin-like C2 99.7 6.2E-17 1.3E-21 137.3 11.4 102 465-567 9-111 (111)
100 cd08377 C2C_MCTP_PRT C2 domain 99.7 2.5E-16 5.4E-21 135.8 15.0 112 448-564 1-118 (119)
101 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 1.4E-16 2.9E-21 137.5 13.3 112 450-563 2-120 (121)
102 cd04043 C2_Munc13_fungal C2 do 99.7 2.6E-16 5.6E-21 137.1 15.1 116 449-566 2-122 (126)
103 cd08676 C2A_Munc13-like C2 dom 99.7 8.1E-17 1.8E-21 143.0 11.8 103 259-366 25-153 (153)
104 cd08386 C2A_Synaptotagmin-7 C2 99.7 1.7E-16 3.7E-21 138.0 13.6 105 447-551 15-124 (125)
105 cd08688 C2_KIAA0528-like C2 do 99.7 7.3E-17 1.6E-21 136.7 10.7 101 264-367 1-108 (110)
106 cd08406 C2B_Synaptotagmin-12 C 99.7 5.1E-17 1.1E-21 142.2 9.6 105 447-553 14-124 (136)
107 cd04010 C2B_RasA3 C2 domain se 99.7 1.3E-16 2.9E-21 141.3 12.1 102 449-552 1-122 (148)
108 cd08390 C2A_Synaptotagmin-15-1 99.7 4E-16 8.7E-21 135.3 14.5 106 447-552 13-123 (123)
109 cd08394 C2A_Munc13 C2 domain f 99.7 2.1E-16 4.6E-21 133.8 12.0 100 262-370 2-103 (127)
110 cd04032 C2_Perforin C2 domain 99.7 2.3E-16 5E-21 135.8 12.4 94 259-356 25-119 (127)
111 cd08407 C2B_Synaptotagmin-13 C 99.7 1E-16 2.2E-21 140.1 10.3 102 447-550 14-123 (138)
112 cd04051 C2_SRC2_like C2 domain 99.7 1.5E-16 3.2E-21 138.4 11.2 115 263-384 1-125 (125)
113 cd08373 C2A_Ferlin C2 domain f 99.7 5.6E-16 1.2E-20 135.1 14.8 112 454-569 2-120 (127)
114 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 1.7E-16 3.7E-21 143.5 11.9 109 259-367 24-137 (162)
115 cd08690 C2_Freud-1 C2 domain f 99.7 6.4E-16 1.4E-20 137.0 15.2 120 265-389 5-137 (155)
116 cd08382 C2_Smurf-like C2 domai 99.7 3.4E-16 7.3E-21 135.4 12.8 110 450-562 2-122 (123)
117 cd04040 C2D_Tricalbin-like C2 99.7 5.2E-16 1.1E-20 132.9 13.6 113 264-383 1-113 (115)
118 cd08406 C2B_Synaptotagmin-12 C 99.7 3.1E-16 6.8E-21 137.2 12.3 110 257-368 10-123 (136)
119 cd04049 C2_putative_Elicitor-r 99.7 2.6E-16 5.7E-21 136.6 11.7 104 262-368 1-108 (124)
120 cd04017 C2D_Ferlin C2 domain f 99.7 7.4E-16 1.6E-20 135.6 14.6 117 449-567 2-134 (135)
121 cd04041 C2A_fungal C2 domain f 99.7 2.2E-16 4.8E-21 134.0 10.7 102 448-552 1-108 (111)
122 cd04026 C2_PKC_alpha_gamma C2 99.7 4.5E-16 9.8E-21 136.5 12.9 110 448-558 13-127 (131)
123 cd08676 C2A_Munc13-like C2 dom 99.7 2.9E-16 6.4E-21 139.5 11.6 102 445-550 25-153 (153)
124 cd08688 C2_KIAA0528-like C2 do 99.7 3E-16 6.5E-21 132.9 10.9 101 450-552 1-109 (110)
125 cd08675 C2B_RasGAP C2 domain s 99.7 3.4E-16 7.5E-21 137.7 11.6 106 264-370 1-122 (137)
126 cd08691 C2_NEDL1-like C2 domai 99.7 1.5E-15 3.2E-20 132.7 15.3 118 263-386 2-136 (137)
127 cd04027 C2B_Munc13 C2 domain s 99.7 7.5E-16 1.6E-20 134.1 13.4 109 449-562 2-127 (127)
128 cd08407 C2B_Synaptotagmin-13 C 99.7 1.3E-16 2.8E-21 139.5 8.5 110 256-367 9-124 (138)
129 cd08692 C2B_Tac2-N C2 domain s 99.7 2.6E-16 5.7E-21 135.3 9.9 105 446-551 12-122 (135)
130 cd04018 C2C_Ferlin C2 domain t 99.7 4.5E-16 9.8E-21 138.1 11.7 107 450-558 2-131 (151)
131 cd04045 C2C_Tricalbin-like C2 99.7 4.9E-16 1.1E-20 133.5 11.4 103 262-368 1-103 (120)
132 cd04038 C2_ArfGAP C2 domain pr 99.7 6.2E-16 1.3E-20 136.7 12.0 93 261-358 1-93 (145)
133 cd04039 C2_PSD C2 domain prese 99.7 5.8E-16 1.3E-20 130.2 11.3 93 448-542 1-99 (108)
134 cd04018 C2C_Ferlin C2 domain t 99.7 6.6E-16 1.4E-20 137.0 11.6 102 263-367 1-124 (151)
135 PLN03008 Phospholipase D delta 99.7 9.5E-16 2.1E-20 164.6 14.9 130 260-395 12-183 (868)
136 cd08384 C2B_Rabphilin_Doc2 C2 99.7 2.3E-16 5E-21 138.8 8.6 110 257-368 8-121 (133)
137 cd04011 C2B_Ferlin C2 domain s 99.7 9.5E-16 2.1E-20 130.2 12.0 98 263-367 5-109 (111)
138 cd04049 C2_putative_Elicitor-r 99.7 1.5E-15 3.3E-20 131.8 13.3 106 448-555 1-111 (124)
139 cd08690 C2_Freud-1 C2 domain f 99.7 3.6E-15 7.9E-20 132.2 15.4 117 451-567 5-139 (155)
140 cd08404 C2B_Synaptotagmin-4 C2 99.7 4.9E-16 1.1E-20 137.1 9.8 105 447-553 14-124 (136)
141 KOG1013 Synaptic vesicle prote 99.6 4.9E-17 1.1E-21 154.3 3.2 229 253-536 84-327 (362)
142 cd08408 C2B_Synaptotagmin-14_1 99.6 2.3E-15 5E-20 132.4 13.1 111 256-367 9-124 (138)
143 cd08692 C2B_Tac2-N C2 domain s 99.6 7.5E-16 1.6E-20 132.5 9.7 113 254-367 6-122 (135)
144 cd08409 C2B_Synaptotagmin-15 C 99.6 5.4E-16 1.2E-20 136.6 8.9 106 447-553 14-125 (137)
145 cd04038 C2_ArfGAP C2 domain pr 99.6 3.4E-15 7.4E-20 131.9 13.8 91 448-542 2-93 (145)
146 cd04009 C2B_Munc13-like C2 dom 99.6 1.8E-15 4E-20 132.7 11.8 98 259-356 13-118 (133)
147 cd08404 C2B_Synaptotagmin-4 C2 99.6 6.8E-16 1.5E-20 136.2 8.7 108 258-367 11-122 (136)
148 cd08405 C2B_Synaptotagmin-7 C2 99.6 7.7E-16 1.7E-20 135.9 8.9 105 447-553 14-124 (136)
149 cd04052 C2B_Tricalbin-like C2 99.6 1.8E-15 3.9E-20 128.3 10.8 101 279-390 9-110 (111)
150 cd04009 C2B_Munc13-like C2 dom 99.6 3.8E-15 8.3E-20 130.7 13.1 95 447-541 15-119 (133)
151 cd04051 C2_SRC2_like C2 domain 99.6 2E-15 4.3E-20 131.3 11.2 111 449-560 1-125 (125)
152 PLN03200 cellulose synthase-in 99.6 8.5E-16 1.8E-20 179.8 11.5 119 445-566 1977-2101(2102)
153 cd08402 C2B_Synaptotagmin-1 C2 99.6 2.9E-15 6.2E-20 132.2 12.3 110 257-368 10-123 (136)
154 cd04013 C2_SynGAP_like C2 doma 99.6 6.4E-15 1.4E-19 129.2 14.4 125 258-390 7-140 (146)
155 cd08405 C2B_Synaptotagmin-7 C2 99.6 2.3E-15 5.1E-20 132.8 11.6 109 257-367 10-122 (136)
156 cd08403 C2B_Synaptotagmin-3-5- 99.6 5.4E-16 1.2E-20 136.5 7.2 109 257-367 9-121 (134)
157 cd00276 C2B_Synaptotagmin C2 d 99.6 1.2E-15 2.5E-20 134.6 9.2 108 447-556 13-126 (134)
158 cd04021 C2_E3_ubiquitin_ligase 99.6 8.5E-15 1.8E-19 126.9 14.5 117 263-386 3-124 (125)
159 cd08402 C2B_Synaptotagmin-1 C2 99.6 1.2E-15 2.5E-20 134.7 9.1 106 447-554 14-125 (136)
160 cd04040 C2D_Tricalbin-like C2 99.6 5.8E-15 1.2E-19 126.4 13.0 109 450-559 1-113 (115)
161 cd04045 C2C_Tricalbin-like C2 99.6 5.2E-15 1.1E-19 127.2 12.7 109 448-559 1-110 (120)
162 cd04011 C2B_Ferlin C2 domain s 99.6 3.9E-15 8.5E-20 126.4 11.7 100 447-552 3-110 (111)
163 cd04037 C2E_Ferlin C2 domain f 99.6 1.8E-15 4E-20 130.9 9.8 93 263-356 1-93 (124)
164 cd08410 C2B_Synaptotagmin-17 C 99.6 6.4E-15 1.4E-19 129.6 12.5 111 257-368 9-123 (135)
165 cd04013 C2_SynGAP_like C2 doma 99.6 1.2E-14 2.5E-19 127.6 13.8 118 446-570 9-144 (146)
166 KOG0696 Serine/threonine prote 99.6 5.2E-16 1.1E-20 151.7 5.6 110 447-557 179-293 (683)
167 cd04026 C2_PKC_alpha_gamma C2 99.6 6.2E-15 1.4E-19 129.2 12.0 107 262-369 13-122 (131)
168 cd04048 C2A_Copine C2 domain f 99.6 6.1E-15 1.3E-19 127.1 11.6 100 268-367 6-113 (120)
169 cd08409 C2B_Synaptotagmin-15 C 99.6 2.1E-15 4.5E-20 132.9 8.9 111 257-368 10-124 (137)
170 cd08384 C2B_Rabphilin_Doc2 C2 99.6 2.2E-15 4.8E-20 132.5 9.1 106 446-553 11-122 (133)
171 cd04035 C2A_Rabphilin_Doc2 C2 99.6 8.7E-15 1.9E-19 126.8 12.6 107 258-365 11-122 (123)
172 cd08675 C2B_RasGAP C2 domain s 99.6 4.8E-15 1E-19 130.4 11.0 104 450-554 1-122 (137)
173 cd08408 C2B_Synaptotagmin-14_1 99.6 2.4E-15 5.2E-20 132.3 9.0 106 446-552 13-125 (138)
174 cd08410 C2B_Synaptotagmin-17 C 99.6 9.8E-15 2.1E-19 128.4 12.4 106 447-553 13-124 (135)
175 KOG0696 Serine/threonine prote 99.6 3.8E-16 8.3E-21 152.7 3.7 109 260-369 178-289 (683)
176 cd04037 C2E_Ferlin C2 domain f 99.6 4.4E-15 9.6E-20 128.5 9.9 118 449-567 1-121 (124)
177 PLN03008 Phospholipase D delta 99.6 9.1E-15 2E-19 157.2 14.4 124 445-570 11-182 (868)
178 cd04035 C2A_Rabphilin_Doc2 C2 99.6 1.8E-14 4E-19 124.8 13.7 102 447-548 14-121 (123)
179 cd08691 C2_NEDL1-like C2 domai 99.6 2.4E-14 5.3E-19 125.1 14.3 111 449-562 2-136 (137)
180 cd08403 C2B_Synaptotagmin-3-5- 99.6 4.6E-15 1E-19 130.5 9.5 104 447-552 13-122 (134)
181 cd08383 C2A_RasGAP C2 domain ( 99.6 2E-14 4.4E-19 123.4 13.0 108 450-564 2-117 (117)
182 cd08383 C2A_RasGAP C2 domain ( 99.6 2.3E-14 4.9E-19 123.1 13.3 114 264-388 2-117 (117)
183 cd00275 C2_PLC_like C2 domain 99.6 5.2E-14 1.1E-18 122.9 15.7 119 263-388 3-127 (128)
184 cd04032 C2_Perforin C2 domain 99.6 1.2E-14 2.7E-19 125.0 11.2 91 446-539 26-118 (127)
185 cd00276 C2B_Synaptotagmin C2 d 99.6 2.9E-15 6.2E-20 132.1 6.8 109 259-369 11-123 (134)
186 cd08686 C2_ABR C2 domain in th 99.6 1.8E-14 4E-19 120.4 10.6 82 264-352 1-91 (118)
187 cd04048 C2A_Copine C2 domain f 99.6 3.6E-14 7.8E-19 122.3 11.7 100 453-552 5-114 (120)
188 cd04021 C2_E3_ubiquitin_ligase 99.5 8.6E-14 1.9E-18 120.6 13.6 111 448-562 2-124 (125)
189 cd00275 C2_PLC_like C2 domain 99.5 1.6E-13 3.5E-18 119.8 13.8 113 449-564 3-127 (128)
190 KOG1028 Ca2+-dependent phospho 99.5 1.3E-13 2.9E-18 143.0 15.4 123 446-568 165-297 (421)
191 cd08686 C2_ABR C2 domain in th 99.5 2.2E-13 4.7E-18 114.0 12.8 105 450-564 1-118 (118)
192 PLN03200 cellulose synthase-in 99.5 4.8E-14 1E-18 165.4 11.7 121 259-390 1977-2101(2102)
193 cd04047 C2B_Copine C2 domain s 99.5 1.3E-13 2.7E-18 117.0 11.3 90 268-358 6-102 (110)
194 PF00168 C2: C2 domain; Inter 99.5 3.7E-13 8E-18 108.1 9.6 85 264-348 1-85 (85)
195 cd04047 C2B_Copine C2 domain s 99.4 1.7E-12 3.6E-17 110.1 10.8 88 452-540 4-100 (110)
196 PF00168 C2: C2 domain; Inter 99.4 4E-12 8.6E-17 102.1 10.8 83 450-532 1-85 (85)
197 KOG1011 Neurotransmitter relea 99.4 9.7E-13 2.1E-17 134.3 7.8 114 445-563 292-422 (1283)
198 KOG1011 Neurotransmitter relea 99.3 1.8E-12 3.9E-17 132.3 8.3 121 260-389 293-424 (1283)
199 cd08374 C2F_Ferlin C2 domain s 99.3 1.5E-11 3.3E-16 105.9 10.4 95 264-358 2-125 (133)
200 smart00239 C2 Protein kinase C 99.3 3.8E-11 8.2E-16 99.3 11.5 96 264-359 2-97 (101)
201 cd00030 C2 C2 domain. The C2 d 99.3 4.3E-11 9.4E-16 98.8 10.9 101 264-366 1-102 (102)
202 cd08374 C2F_Ferlin C2 domain s 99.2 4.8E-11 1E-15 102.8 9.9 93 450-542 2-125 (133)
203 KOG1326 Membrane-associated pr 99.2 3.9E-12 8.4E-17 136.5 3.4 91 447-537 612-703 (1105)
204 PLN02223 phosphoinositide phos 99.2 2.5E-10 5.5E-15 118.6 15.2 104 261-367 408-518 (537)
205 cd00030 C2 C2 domain. The C2 d 99.2 1.6E-10 3.4E-15 95.4 10.6 100 450-550 1-102 (102)
206 PLN02270 phospholipase D alpha 99.2 2.1E-10 4.6E-15 124.0 14.0 123 445-569 5-152 (808)
207 smart00239 C2 Protein kinase C 99.2 2.4E-10 5.3E-15 94.4 11.0 94 450-543 2-97 (101)
208 PF10296 DUF2404: Putative int 99.2 2E-10 4.3E-15 93.0 9.2 85 75-159 1-89 (91)
209 KOG2059 Ras GTPase-activating 99.1 1.1E-10 2.3E-15 121.5 8.9 120 448-569 5-129 (800)
210 PLN02270 phospholipase D alpha 99.1 4.8E-10 1E-14 121.3 14.0 128 261-394 7-153 (808)
211 PLN02952 phosphoinositide phos 99.1 1.1E-09 2.4E-14 116.4 15.0 105 261-368 469-581 (599)
212 KOG1326 Membrane-associated pr 99.1 3.7E-10 8E-15 121.6 9.1 89 262-353 613-703 (1105)
213 PLN02223 phosphoinositide phos 99.1 1.7E-09 3.7E-14 112.5 13.7 115 447-564 408-536 (537)
214 PLN02230 phosphoinositide phos 99.0 3.8E-09 8.2E-14 112.2 14.1 105 261-368 468-580 (598)
215 PLN02222 phosphoinositide phos 99.0 9.9E-09 2.1E-13 108.9 15.1 104 261-367 451-562 (581)
216 KOG1328 Synaptic vesicle prote 99.0 1.8E-10 3.8E-15 119.6 1.8 129 260-392 112-304 (1103)
217 PLN02228 Phosphoinositide phos 99.0 1.2E-08 2.5E-13 108.1 15.0 124 261-390 430-562 (567)
218 PLN02228 Phosphoinositide phos 98.9 8.9E-09 1.9E-13 109.0 13.8 122 447-571 430-567 (567)
219 PLN02952 phosphoinositide phos 98.9 1.1E-08 2.3E-13 109.0 13.6 115 447-564 469-598 (599)
220 KOG1327 Copine [Signal transdu 98.9 8.8E-09 1.9E-13 106.3 12.5 182 298-540 42-236 (529)
221 cd08689 C2_fungal_Pkc1p C2 dom 98.9 3.5E-09 7.6E-14 85.4 7.4 86 450-541 1-89 (109)
222 KOG0169 Phosphoinositide-speci 98.9 7.8E-09 1.7E-13 109.7 11.8 121 263-389 617-744 (746)
223 cd08689 C2_fungal_Pkc1p C2 dom 98.9 6.1E-09 1.3E-13 84.1 7.4 84 264-355 1-87 (109)
224 PLN02230 phosphoinositide phos 98.8 2.1E-08 4.5E-13 106.7 12.4 115 447-564 468-597 (598)
225 PLN02222 phosphoinositide phos 98.8 5E-08 1.1E-12 103.6 13.4 115 447-564 451-580 (581)
226 KOG1264 Phospholipase C [Lipid 98.8 3.6E-08 7.8E-13 104.0 10.5 124 262-392 1065-1192(1267)
227 KOG0169 Phosphoinositide-speci 98.8 4.2E-08 9.1E-13 104.3 11.1 118 449-566 617-745 (746)
228 KOG0905 Phosphoinositide 3-kin 98.8 9.6E-09 2.1E-13 112.1 6.3 107 447-553 1523-1636(1639)
229 KOG1031 Predicted Ca2+-depende 98.7 3.7E-08 8.1E-13 100.2 9.9 124 262-393 3-140 (1169)
230 PLN02352 phospholipase D epsil 98.7 1.8E-07 3.9E-12 101.4 12.6 118 445-570 7-135 (758)
231 PLN02352 phospholipase D epsil 98.6 3.6E-07 7.8E-12 99.2 12.8 122 260-394 8-135 (758)
232 KOG1328 Synaptic vesicle prote 98.6 1.6E-08 3.5E-13 105.4 2.1 96 261-356 946-1049(1103)
233 KOG1264 Phospholipase C [Lipid 98.6 1.6E-07 3.5E-12 99.2 9.1 102 448-553 1065-1172(1267)
234 KOG1031 Predicted Ca2+-depende 98.5 2.1E-07 4.6E-12 94.8 8.0 114 448-563 3-134 (1169)
235 KOG0905 Phosphoinositide 3-kin 98.3 3.8E-07 8.3E-12 100.1 4.2 108 260-367 1522-1634(1639)
236 cd08683 C2_C2cd3 C2 domain fou 98.2 1.5E-06 3.3E-11 72.4 4.4 101 450-550 1-143 (143)
237 KOG1327 Copine [Signal transdu 98.2 5.7E-06 1.2E-10 85.9 9.3 87 269-356 143-236 (529)
238 KOG1013 Synaptic vesicle prote 98.0 6.2E-06 1.3E-10 79.5 4.9 103 260-364 231-337 (362)
239 KOG3532 Predicted protein kina 97.9 5.2E-05 1.1E-09 79.3 9.4 227 58-293 81-358 (1051)
240 PF12416 DUF3668: Cep120 prote 97.9 0.0015 3.3E-08 65.6 19.4 257 264-541 2-296 (340)
241 PLN02964 phosphatidylserine de 97.9 2.2E-05 4.8E-10 84.9 6.7 88 259-356 51-139 (644)
242 cd08684 C2A_Tac2-N C2 domain f 97.8 1.6E-05 3.6E-10 61.4 3.4 98 265-365 2-102 (103)
243 cd08684 C2A_Tac2-N C2 domain f 97.8 2.7E-05 6E-10 60.2 3.6 96 452-549 3-102 (103)
244 KOG2060 Rab3 effector RIM1 and 97.6 8.9E-05 1.9E-09 72.9 5.2 108 445-553 266-380 (405)
245 cd08683 C2_C2cd3 C2 domain fou 97.6 0.00018 4E-09 60.2 6.2 103 264-366 1-143 (143)
246 KOG3837 Uncharacterized conser 97.4 0.00015 3.3E-09 71.9 4.2 120 446-565 365-503 (523)
247 PLN02964 phosphatidylserine de 97.2 0.00049 1.1E-08 74.8 6.3 88 445-541 51-140 (644)
248 KOG2060 Rab3 effector RIM1 and 97.1 0.00034 7.4E-09 68.9 3.2 111 259-370 266-381 (405)
249 KOG3837 Uncharacterized conser 97.0 0.00043 9.4E-09 68.8 3.1 124 261-389 366-503 (523)
250 PF15627 CEP76-C2: CEP76 C2 do 96.9 0.012 2.6E-07 51.9 10.5 124 445-568 6-153 (156)
251 PF10358 NT-C2: N-terminal C2 96.6 0.098 2.1E-06 46.1 14.7 122 447-572 6-142 (143)
252 PF15627 CEP76-C2: CEP76 C2 do 96.5 0.03 6.6E-07 49.4 10.6 129 260-391 7-152 (156)
253 KOG1265 Phospholipase C [Lipid 96.0 0.015 3.3E-07 63.4 6.9 90 261-358 702-798 (1189)
254 PF12416 DUF3668: Cep120 prote 96.0 0.098 2.1E-06 52.8 12.3 113 450-567 2-134 (340)
255 cd08693 C2_PI3K_class_I_beta_d 95.5 0.11 2.3E-06 47.6 9.4 89 448-538 8-120 (173)
256 cd08398 C2_PI3K_class_I_alpha 95.3 0.13 2.9E-06 46.0 9.2 87 448-538 8-106 (158)
257 PF10358 NT-C2: N-terminal C2 95.1 1.6 3.5E-05 38.3 15.7 121 262-392 7-138 (143)
258 cd08398 C2_PI3K_class_I_alpha 95.0 0.56 1.2E-05 42.0 12.3 89 262-354 8-106 (158)
259 KOG1265 Phospholipase C [Lipid 94.5 0.091 2E-06 57.7 7.0 90 445-541 700-797 (1189)
260 cd08687 C2_PKN-like C2 domain 94.5 0.33 7.2E-06 38.4 8.3 84 469-564 9-92 (98)
261 cd08380 C2_PI3K_like C2 domain 94.4 0.28 6E-06 44.1 9.1 90 448-538 8-107 (156)
262 cd08397 C2_PI3K_class_III C2 d 94.2 0.2 4.4E-06 44.9 7.7 72 467-538 28-107 (159)
263 cd08693 C2_PI3K_class_I_beta_d 93.4 0.47 1E-05 43.3 8.7 74 262-337 8-87 (173)
264 cd04012 C2A_PI3K_class_II C2 d 93.3 0.39 8.5E-06 43.8 7.9 92 447-538 7-119 (171)
265 cd08687 C2_PKN-like C2 domain 92.9 1.2 2.6E-05 35.4 8.8 86 281-388 7-92 (98)
266 cd08399 C2_PI3K_class_I_gamma 92.8 0.7 1.5E-05 42.2 8.8 90 448-538 10-122 (178)
267 cd08380 C2_PI3K_like C2 domain 92.6 0.71 1.5E-05 41.4 8.6 92 262-354 8-107 (156)
268 KOG1452 Predicted Rho GTPase-a 92.5 0.28 6.2E-06 47.6 5.9 117 260-389 49-167 (442)
269 cd08695 C2_Dock-B C2 domains f 91.6 2.6 5.6E-05 38.8 10.9 55 298-352 54-112 (189)
270 cd08397 C2_PI3K_class_III C2 d 90.9 0.92 2E-05 40.8 7.2 74 281-354 28-107 (159)
271 KOG1452 Predicted Rho GTPase-a 90.6 0.49 1.1E-05 46.0 5.4 113 445-565 48-167 (442)
272 cd08694 C2_Dock-A C2 domains f 90.6 4 8.6E-05 37.7 11.1 55 298-352 54-114 (196)
273 cd04012 C2A_PI3K_class_II C2 d 90.1 1.1 2.3E-05 40.9 7.1 92 262-353 8-118 (171)
274 PF00792 PI3K_C2: Phosphoinosi 89.5 1.9 4E-05 38.0 8.0 54 485-538 23-85 (142)
275 smart00142 PI3K_C2 Phosphoinos 88.6 2.7 5.8E-05 34.5 7.8 72 450-521 13-91 (100)
276 cd08695 C2_Dock-B C2 domains f 87.9 5 0.00011 37.0 9.7 56 482-537 53-113 (189)
277 PF14429 DOCK-C2: C2 domain in 87.7 1.9 4.1E-05 39.8 7.1 56 298-353 60-120 (184)
278 cd08399 C2_PI3K_class_I_gamma 86.9 3.8 8.1E-05 37.5 8.3 72 263-336 11-88 (178)
279 PF00792 PI3K_C2: Phosphoinosi 85.0 10 0.00022 33.3 10.0 55 300-354 23-85 (142)
280 cd08694 C2_Dock-A C2 domains f 84.4 10 0.00022 35.1 9.8 55 482-536 53-114 (196)
281 PF14429 DOCK-C2: C2 domain in 81.8 5.4 0.00012 36.8 7.2 56 482-537 59-120 (184)
282 PF15625 CC2D2AN-C2: CC2D2A N- 81.1 30 0.00064 31.4 11.7 70 282-355 36-107 (168)
283 KOG2238 Uncharacterized conser 80.2 0.56 1.2E-05 51.3 0.1 89 69-157 334-426 (795)
284 KOG1329 Phospholipase D1 [Lipi 79.8 4.3 9.3E-05 45.6 6.6 107 283-394 138-245 (887)
285 cd08697 C2_Dock-D C2 domains f 79.7 19 0.00042 33.1 9.9 56 298-353 57-123 (185)
286 PF11618 DUF3250: Protein of u 79.1 13 0.00028 30.9 7.8 87 296-389 10-105 (107)
287 cd08679 C2_DOCK180_related C2 78.1 6.9 0.00015 35.9 6.6 54 299-353 55-115 (178)
288 smart00142 PI3K_C2 Phosphoinos 77.7 11 0.00025 30.7 7.2 74 264-337 13-92 (100)
289 cd08696 C2_Dock-C C2 domains f 76.6 8.2 0.00018 35.3 6.5 56 297-352 54-117 (179)
290 PTZ00447 apical membrane antig 75.9 27 0.00058 34.9 10.0 108 447-562 57-170 (508)
291 PF11618 DUF3250: Protein of u 75.2 17 0.00036 30.2 7.4 92 472-565 2-105 (107)
292 PF15625 CC2D2AN-C2: CC2D2A N- 73.1 21 0.00045 32.3 8.3 67 470-538 38-106 (168)
293 KOG1329 Phospholipase D1 [Lipi 68.4 5.8 0.00013 44.6 4.1 99 469-569 138-244 (887)
294 PF01102 Glycophorin_A: Glycop 67.2 1.6 3.4E-05 37.0 -0.3 30 4-33 66-95 (122)
295 cd08679 C2_DOCK180_related C2 61.3 26 0.00056 32.0 6.5 54 483-537 54-115 (178)
296 cd08696 C2_Dock-C C2 domains f 60.2 25 0.00055 32.1 6.1 56 482-537 54-118 (179)
297 PF06295 DUF1043: Protein of u 56.2 9.1 0.0002 33.0 2.4 19 4-22 3-21 (128)
298 cd08697 C2_Dock-D C2 domains f 53.9 39 0.00085 31.1 6.2 56 482-537 56-123 (185)
299 PF12732 YtxH: YtxH-like prote 52.0 13 0.00028 28.5 2.4 20 3-22 1-20 (74)
300 PF14851 FAM176: FAM176 family 45.8 9.8 0.00021 33.6 1.0 22 3-24 26-47 (153)
301 KOG0694 Serine/threonine prote 44.4 5.6 0.00012 43.4 -0.9 81 282-366 27-108 (694)
302 PF01034 Syndecan: Syndecan do 44.0 7.5 0.00016 28.6 -0.0 22 2-23 13-34 (64)
303 PF01102 Glycophorin_A: Glycop 42.2 6.1 0.00013 33.5 -0.8 29 2-30 68-96 (122)
304 KOG4027 Uncharacterized conser 42.0 1.5E+02 0.0032 26.3 7.4 47 306-352 59-109 (187)
305 PF15179 Myc_target_1: Myc tar 41.5 5.9 0.00013 35.6 -1.1 24 1-24 23-46 (197)
306 KOG4092 Mitochondrial F1F0-ATP 41.3 13 0.00028 29.5 0.9 45 56-100 36-80 (108)
307 PF07162 B9-C2: Ciliary basal 39.5 2.9E+02 0.0062 24.9 11.2 81 266-352 6-102 (168)
308 PRK11677 hypothetical protein; 38.5 29 0.00062 30.1 2.7 17 4-20 7-23 (134)
309 PF14186 Aida_C2: Cytoskeletal 36.3 3E+02 0.0066 24.3 9.0 94 445-541 10-115 (147)
310 KOG0694 Serine/threonine prote 36.2 10 0.00022 41.4 -0.4 93 468-565 27-121 (694)
311 PF12732 YtxH: YtxH-like prote 34.4 25 0.00055 26.8 1.6 19 1-19 3-21 (74)
312 PF04478 Mid2: Mid2 like cell 33.5 19 0.00041 31.7 0.8 21 2-22 53-73 (154)
313 PF06219 DUF1005: Protein of u 32.4 2.9E+02 0.0064 28.7 9.0 64 326-390 95-168 (460)
314 KOG4269 Rac GTPase-activating 31.9 28 0.00061 39.2 1.9 87 259-352 756-854 (1112)
315 PF14356 DUF4403: Domain of un 31.8 5.9E+02 0.013 26.9 11.9 87 119-242 280-367 (427)
316 PTZ00447 apical membrane antig 31.7 5E+02 0.011 26.3 10.2 108 263-386 59-170 (508)
317 KOG4269 Rac GTPase-activating 28.3 27 0.00059 39.4 1.1 70 445-521 756-828 (1112)
318 PF14023 DUF4239: Protein of u 27.1 1.3E+02 0.0028 28.1 5.4 23 4-26 4-26 (209)
319 cd05137 RasGAP_CLA2_BUD2 CLA2/ 25.9 85 0.0018 32.8 4.2 43 343-389 1-44 (395)
320 PF14909 SPATA6: Spermatogenes 25.3 4.6E+02 0.01 22.9 9.4 84 264-354 4-99 (140)
321 COG4064 MtrG Tetrahydromethano 23.2 31 0.00067 25.7 0.3 15 2-16 51-65 (75)
322 PF10409 PTEN_C2: C2 domain of 23.1 4.7E+02 0.01 22.2 8.0 89 449-539 5-98 (134)
323 PF06667 PspB: Phage shock pro 22.7 36 0.00077 26.2 0.5 7 56-62 66-72 (75)
324 PF06219 DUF1005: Protein of u 22.7 2.5E+02 0.0054 29.3 6.5 60 511-570 95-172 (460)
325 PF06295 DUF1043: Protein of u 22.0 49 0.0011 28.5 1.3 20 2-21 5-24 (128)
326 PRK09458 pspB phage shock prot 21.9 49 0.0011 25.3 1.1 6 57-62 67-72 (75)
327 KOG2419 Phosphatidylserine dec 21.5 21 0.00046 38.6 -1.2 59 261-323 279-341 (975)
328 TIGR02976 phageshock_pspB phag 21.4 38 0.00082 26.1 0.5 6 57-62 67-72 (75)
329 COG4980 GvpP Gas vesicle prote 21.0 46 0.00099 27.9 0.9 22 1-22 5-26 (115)
330 COG3105 Uncharacterized protei 21.0 62 0.0013 27.5 1.6 15 4-18 12-26 (138)
No 1
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=100.00 E-value=2.5e-56 Score=478.17 Aligned_cols=451 Identities=25% Similarity=0.402 Sum_probs=376.9
Q ss_pred CcccchHHHHHHHHhhChhhHHHHHHHHHHhHHHHHhhhCCCccceEEEeEEecCCCCceEeEEEEEEc-CCCeEEEEEe
Q 008214 66 SHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIED-GGSGVTMELE 144 (573)
Q Consensus 66 ~~~E~~~WlN~~l~~~Wp~~~~~~~~~~~~~~~~~l~~~~p~~l~~i~~~~~~lG~~pP~i~~i~~~~~-~~~~~~le~~ 144 (573)
.|+|++||||.+|+++||.+++.+++.+.+++|+.|++..|+||+.+.+.+||||++||||.+||.|+. +.+.+.||++
T Consensus 218 nd~ESveWLNtfL~KfW~i~eP~iSqqV~dqvn~~la~~iPsFI~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~ 297 (1227)
T COG5038 218 NDYESVEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSFIDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVD 297 (1227)
T ss_pred cchhHHHHHHHHHHhheeccChHHHHHHHHHHHHHHHhhcchhhhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEee
Confidence 578999999999999999999999999999999999999999999999999999999999999999988 7799999999
Q ss_pred eEEec---------------CcceEEEEee--eec-eeeeEEEEEEEEEEEEEEEeecCCcCCCeeeEEEEEecccceee
Q 008214 145 MQWDA---------------NSSIILAIKT--RLG-VALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLD 206 (573)
Q Consensus 145 ~~~~~---------------~~~i~l~~~~--~~g-~~~~v~v~~~~~~g~~rv~l~pl~~~~P~~~~~~~~f~~~p~l~ 206 (573)
+++.. ++.|.|.++. .+| +++||.|+++.|+|++|++++ |++.+|++..+.++|++.|.+|
T Consensus 298 ~sftP~d~sD~t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~-L~~~~PfiktV~~~Lle~Pe~d 376 (1227)
T COG5038 298 FSFTPHDISDVTATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFD 376 (1227)
T ss_pred eccCccchhhhhhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEE-ecCCCcceeEEEEEEecCccee
Confidence 99963 3457777753 445 789999999999999999999 9999999999999999999999
Q ss_pred EEEEEcc-----ccccCCcchHHHHHHHHHHHHHhcccccceeeecCCCCCCcccccCcceEEEEEEEEeeeccCCC--C
Q 008214 207 FKLKVVG-----GDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKD--L 279 (573)
Q Consensus 207 f~~~~~g-----~~~~~iP~l~~~~~~~i~~~i~~~~~~P~~~~ipl~~~~~~~~~~~~~G~L~V~v~~a~~L~~~d--~ 279 (573)
|.++++| .||+.+|||+.|++++|...++.++++|+.+.+++..-- ......+.|++.|+|.+|++|...+ .
T Consensus 377 f~l~Plg~~~~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m-~~~s~~aIGVv~vkI~sa~~lk~~d~~i 455 (1227)
T COG5038 377 FILVPLGGDFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIM-AGDSGTAIGVVEVKIKSAEGLKKSDSTI 455 (1227)
T ss_pred EEEEEcCCCccceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhh-ccccCCeeEEEEEEEeeccCcccccccc
Confidence 9999987 378999999999999999999999999999999764210 1113468999999999999999888 5
Q ss_pred CCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCCceEEEEEEccccCCCce
Q 008214 280 IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKV 359 (573)
Q Consensus 280 ~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~ 359 (573)
.+..|||+.+... +....||++.+++.||+|||+|++.+... ++.|.++|||.+....|+.+|++.++|..|...+.
T Consensus 456 ~~~vDpyit~~~~--~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~ 532 (1227)
T COG5038 456 NGTVDPYITVTFS--DRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPV 532 (1227)
T ss_pred cCCCCceEEEEec--cccCCccceeeccCCccccceEEEEeccc-CCceeEEEEeccccCCcceeeeEEechHHhhhccc
Confidence 7899999999975 34456999999999999999999998854 56999999999888999999999999999866554
Q ss_pred eEE-EEEeeecccccCCCcceeEEEEEEEEeecCCCCCccCCCCCCCChhhHHHHhccCcccccCCCCCcchhhhchhhh
Q 008214 360 KDV-WLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDAS 438 (573)
Q Consensus 360 ~~~-w~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (573)
... .+.+ .++.+..|+++..+.|+|.-.+.....+. .+..
T Consensus 533 ~~ne~~e~------~~~~k~vGrL~yDl~ffp~~e~k~~~~~s--------------------~e~~------------- 573 (1227)
T COG5038 533 KKNELYEF------LRNTKNVGRLTYDLRFFPVIEDKKELKGS--------------------VEPL------------- 573 (1227)
T ss_pred cccceeee------eccCccceEEEEeeeeecccCCccccccc--------------------cCCc-------------
Confidence 332 2322 34678899999999999854332111000 0000
Q ss_pred ccccccceeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEE
Q 008214 439 QKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVW 518 (573)
Q Consensus 439 ~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~ 518 (573)
.....|++.+++.++.+|.... ......|++++++. ...+.|+.++.+.+|.||+.+.-.+.+..+..+.+.++
T Consensus 574 ----ed~n~GI~k~tl~~~~~l~~~~-~~~~~~~a~l~~~~-keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~ 647 (1227)
T COG5038 574 ----EDSNTGILKVTLREVKALDELS-SKKDNKSAELYTNA-KEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTF 647 (1227)
T ss_pred ----ccCCcceeEEEeeccccccCcc-ccccceeEEEEecc-eEEeccceeeeccCCceeeecceEeccCcceeEEEEec
Confidence 0134699999999999997642 12233458888874 46778888999999999999999999888889999999
Q ss_pred eCCCCCCceeEEEEEEcceeeecC-eEeEEEEcCCCCCeEEEEEEEEEecCC
Q 008214 519 DHDTFGKDYMGRCILTLTRVILEG-EYTDCFELDGTKSGKLKLHLKWMPQPI 569 (573)
Q Consensus 519 d~~~~~~d~lG~~~i~l~~l~~~~-~~~~~~~L~~~~~G~i~l~l~~~p~~~ 569 (573)
|.. ..+.+|....+|.+++... ...+||++. .++|+|.++-.|+|.+.
T Consensus 648 d~~--~g~~i~~~~~~l~~li~~t~dt~~~f~~~-~~kg~I~~t~~W~Pi~~ 696 (1227)
T COG5038 648 DVQ--SGKVIATEGSTLPDLIDRTLDTFLVFPLR-NPKGRIFITNYWKPIYN 696 (1227)
T ss_pred ccc--cCceeccccccchHhhhccccceEEEEcC-CCcceEEEEeccceeec
Confidence 876 3578899888888877653 457999998 67899999999999876
No 2
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.6e-30 Score=263.93 Aligned_cols=224 Identities=34% Similarity=0.521 Sum_probs=193.8
Q ss_pred ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEec--CCCcEEEEEEEe
Q 008214 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIYD 334 (573)
Q Consensus 257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~--~~~~~l~i~v~d 334 (573)
|......|.|+|++|++|+.+|..|.+||||++++.+..+.+.+|++.++++||+|||+|.|.|.. .....|.+.|||
T Consensus 162 Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~ 241 (421)
T KOG1028|consen 162 YDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYD 241 (421)
T ss_pred ecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEe
Confidence 445678999999999999999966789999999999888788999999999999999999999643 357799999999
Q ss_pred CCCCCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEeecCCCCCccCCCCCCCChhhHHHHh
Q 008214 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVL 414 (573)
Q Consensus 335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 414 (573)
+|+++++++||++.++|..+........|.++....... ....|+|.++++|.|
T Consensus 242 ~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~--~~~~gel~~sL~Y~p------------------------ 295 (421)
T KOG1028|consen 242 FDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDS--EELAGELLLSLCYLP------------------------ 295 (421)
T ss_pred cCCcccccEEEEEEecCccccccccceeeeccccccCCc--ccccceEEEEEEeec------------------------
Confidence 999999999999999999987777688999997654322 222289999999976
Q ss_pred ccCcccccCCCCCcchhhhchhhhccccccceeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCC
Q 008214 415 TNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVND 491 (573)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~ 491 (573)
..|.|+|.|.+|+||...+..+.+||||++++-.. ..++||.++++
T Consensus 296 -------------------------------~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~ 344 (421)
T KOG1028|consen 296 -------------------------------TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKK 344 (421)
T ss_pred -------------------------------CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccC
Confidence 24899999999999999999999999999999532 34789999999
Q ss_pred CCCCeeeeEEEEEec--cCCCCEEEEEEEeCCCCCC-ceeEEEEEEcce
Q 008214 492 CLNPIWNQTFDFVVE--DGLHDMLIAEVWDHDTFGK-DYMGRCILTLTR 537 (573)
Q Consensus 492 t~nP~wne~f~f~v~--~~~~~~L~i~V~d~~~~~~-d~lG~~~i~l~~ 537 (573)
+.||+|||+|.|.|. ...+..|.|+|||++..+. ++||++.+....
T Consensus 345 ~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 345 TLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred CCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 999999999999887 3345689999999999876 699999988875
No 3
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.90 E-value=4.1e-23 Score=211.99 Aligned_cols=250 Identities=21% Similarity=0.347 Sum_probs=200.2
Q ss_pred eEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCC
Q 008214 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS 341 (573)
Q Consensus 262 G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d 341 (573)
..|.|+|.+|+||+..+..|.+||||.|.+. .....+|.++.+++.|.|.|+|+|.+.. .-+.|.|.|||.| +++|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD--~E~v~RT~tv~ksL~PF~gEe~~~~iP~-~F~~l~fYv~D~d-~~~D 80 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLD--QEEVCRTATVEKSLCPFFGEEFYFEIPR-TFRYLSFYVWDRD-LKRD 80 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeec--chhhhhhhhhhhhcCCccccceEEecCc-ceeeEEEEEeccc-cccc
Confidence 4688999999999999999999999999997 3568999999999999999999999873 4568999999999 8999
Q ss_pred CceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEeecCCCCCccCCCCCCCChhhHHHHhccCcccc
Q 008214 342 ELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKAL 421 (573)
Q Consensus 342 ~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (573)
+.||.+.|.=.+|...+..+.|+.|.+- ..+....|+|++++.+.+...
T Consensus 81 ~~IGKvai~re~l~~~~~~d~W~~L~~V---D~dsEVQG~v~l~l~~~e~~~---------------------------- 129 (800)
T KOG2059|consen 81 DIIGKVAIKREDLHMYPGKDTWFSLQPV---DPDSEVQGKVHLELALTEAIQ---------------------------- 129 (800)
T ss_pred cccceeeeeHHHHhhCCCCccceecccc---CCChhhceeEEEEEEeccccC----------------------------
Confidence 9999999999999887789999999753 346789999999999864111
Q ss_pred cCCCCCcchhhhchhhhccccccceeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcc--eeEeecccCCCCCCeeee
Q 008214 422 KSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE--TRNKTRVVNDCLNPIWNQ 499 (573)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~kT~~~~~t~nP~wne 499 (573)
..-+...+.+++++.+.. ++.+|||+++...+.. ...+|+++++|.+|.|+|
T Consensus 130 -------------------------~~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~E 183 (800)
T KOG2059|consen 130 -------------------------SSGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDE 183 (800)
T ss_pred -------------------------CCcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhh
Confidence 111222333444544433 4569999999986532 346899999999999999
Q ss_pred EEEEEeccC---------------CCCEEEEEEEeC-CCCC-CceeEEEEEEcceeeecCeEeEEEEcCCC---------
Q 008214 500 TFDFVVEDG---------------LHDMLIAEVWDH-DTFG-KDYMGRCILTLTRVILEGEYTDCFELDGT--------- 553 (573)
Q Consensus 500 ~f~f~v~~~---------------~~~~L~i~V~d~-~~~~-~d~lG~~~i~l~~l~~~~~~~~~~~L~~~--------- 553 (573)
.|.|.+... ..-.|.+++|+. +... ++|+|++.+++...........||-|...
T Consensus 184 v~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~ 263 (800)
T KOG2059|consen 184 VFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDG 263 (800)
T ss_pred heeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCC
Confidence 999988633 233678889984 4443 46999999999998867777899999532
Q ss_pred -CCeEEEEEEEEEecCCCCC
Q 008214 554 -KSGKLKLHLKWMPQPIYRD 572 (573)
Q Consensus 554 -~~G~i~l~l~~~p~~~~~~ 572 (573)
.-|.+++.+.|....++++
T Consensus 264 ~~lGslrl~v~y~~D~Vlps 283 (800)
T KOG2059|consen 264 GDLGSLRLNVTYTEDHVLPS 283 (800)
T ss_pred CCccceeeeEEeeeceeccH
Confidence 3589999999999888765
No 4
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.88 E-value=9.5e-22 Score=167.85 Aligned_cols=119 Identities=24% Similarity=0.446 Sum_probs=103.5
Q ss_pred ceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCC-CCCceeccEEEEEEecCCCcEEEEEEEeCCCCC
Q 008214 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINN-DLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339 (573)
Q Consensus 261 ~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~-~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~ 339 (573)
.|.|+|+|++|+++++.+ .|++||||++.++ +++.+|+++.+ +.||+|||+|.|.+.+. ...|.|+|||+|.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg---~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~ 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVG---HAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFT 75 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEEC---CEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCc
Confidence 489999999999988777 7999999999997 67789999865 79999999999999754 468999999999999
Q ss_pred CCCceEEEEEEcc-ccCCCceeEEEEEeeecccccCCCcceeEEEEEEEE
Q 008214 340 SSELIGCAQVRLC-ELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (573)
Q Consensus 340 ~d~~lG~~~i~l~-~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (573)
+|++||++.+++. .+..+...+.|++|.+.. .....|+|+++++|
T Consensus 76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~----~~~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTHITIPESVFNGETLDDWYSLSGKQ----GEDKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEEEECchhccCCCCccccEeCcCcc----CCCCceEEEEEEeC
Confidence 9999999999996 577788789999996532 34678999999986
No 5
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.85 E-value=2.4e-19 Score=194.41 Aligned_cols=339 Identities=25% Similarity=0.368 Sum_probs=229.9
Q ss_pred HHHHHHHHHHhcccccce----e---ee---cCCC-CC-Ccc-cccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEe
Q 008214 226 IEATIHDAIEDSITWPVR----K---IV---PILP-GD-YSE-LELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVR 292 (573)
Q Consensus 226 ~~~~i~~~i~~~~~~P~~----~---~i---pl~~-~~-~~~-~~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~ 292 (573)
+...+.......++.|.+ . +. |+.- ++ .+. ....+.|.++|+|..|.+|.+....+++|||+++.+.
T Consensus 662 l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n 741 (1227)
T COG5038 662 LPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVN 741 (1227)
T ss_pred chHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCcccccceEEEec
Confidence 345566666666666665 1 11 3321 11 111 2447999999999999999988888999999999997
Q ss_pred cCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCCceEEEEEEccccCCCce---eEEEEE---e
Q 008214 293 PLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKV---KDVWLK---L 366 (573)
Q Consensus 293 ~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~---~~~w~~---L 366 (573)
+..++||-....++||.||+..+..+..+ .+.+.+++.|++..+.|..+|++.+++.++..... ....+. .
T Consensus 742 --~~~k~rti~~~~~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~ 818 (1227)
T COG5038 742 --NLVKYRTIYGSSTLNPIWNEILYVPVTSK-NQRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEE 818 (1227)
T ss_pred --ceeEEEEecccCccccceeeeEEEEecCC-ccEEeeeeecchhccccceeceeeeeeeeeeecCCCcceEEeecCccc
Confidence 35678888889999999999988888854 56799999999999999999999999999854111 111111 0
Q ss_pred eecccccCCCcceeEEEEEEEEeecCCCCCcc----------------------CC---CC--------CCCChh---h-
Q 008214 367 VKDLDVQRDTKYRGQVHLELLYCPFGMENVFT----------------------NP---FA--------PNFSMT---S- 409 (573)
Q Consensus 367 ~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~~----------------------~~---~~--------~~~~~~---~- 409 (573)
...+. .......|++.+.+.|+|..-..... .+ .. ...++. +
T Consensus 819 t~~l~-~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~ 897 (1227)
T COG5038 819 TGKLS-LTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDM 897 (1227)
T ss_pred ccccc-cccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhcceeeccccch
Confidence 11111 11457889999999999843221110 00 00 000000 0
Q ss_pred --------HHHHhccCcc---------------------ccc--------CC-CCCcchh---------h----------
Q 008214 410 --------LEKVLTNGEK---------------------ALK--------SG-ANGTEAI---------E---------- 432 (573)
Q Consensus 410 --------~~~~~~~~~~---------------------~~~--------~~-~~~~~~~---------~---------- 432 (573)
+..+++..+- .++ +. ..+.... +
T Consensus 898 ~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv 977 (1227)
T COG5038 898 YSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYSETTFRV 977 (1227)
T ss_pred hhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhccceEEEEe
Confidence 1122211100 000 00 0000000 0
Q ss_pred -------------------------hchhh-hc---------------------cccccceeeEEEEEEEEeecCCCCCC
Q 008214 433 -------------------------LEKDA-SQ---------------------KRREVIIRGVLSVTVILAENLPASDL 465 (573)
Q Consensus 433 -------------------------~~~~~-~~---------------------~~~~~~~~~~L~V~v~~a~~L~~~~~ 465 (573)
+++.. .+ .......+|.|.|.+..|.||+..+.
T Consensus 978 ~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~~d~ 1057 (1227)
T COG5038 978 TKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGENLPSSDE 1057 (1227)
T ss_pred ccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccCCCccccc
Confidence 00000 00 00011347899999999999999999
Q ss_pred CCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-ceeEEEEEEcceeeecCeE
Q 008214 466 MGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEY 544 (573)
Q Consensus 466 ~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~~ 544 (573)
+|.+||||++.+++ +..++|+++++|+||+|||.|...|.+...+.+.|.|+|++...+ |.||.+.++|+.+..++..
T Consensus 1058 ng~sDpfv~~~ln~-k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~ 1136 (1227)
T COG5038 1058 NGYSDPFVKLFLNE-KSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTT 1136 (1227)
T ss_pred CCCCCceEEEEecc-eecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCccccccccccHhhcCcCCcc
Confidence 99999999999986 358999999999999999999999998888999999999998765 7999999999999888877
Q ss_pred eEEEEcCCCC----CeEEEEEEEEEecCC
Q 008214 545 TDCFELDGTK----SGKLKLHLKWMPQPI 569 (573)
Q Consensus 545 ~~~~~L~~~~----~G~i~l~l~~~p~~~ 569 (573)
....+|++.. .|.++..+.|++.+.
T Consensus 1137 n~~i~ldgk~~~~~~g~~~~~~~~r~~~~ 1165 (1227)
T COG5038 1137 NSNIPLDGKTFIVLDGTLHPGFNFRSKYA 1165 (1227)
T ss_pred ceeeeccCcceEecccEeecceecchhhh
Confidence 7788887754 577777777776654
No 6
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.85 E-value=2.2e-20 Score=159.40 Aligned_cols=113 Identities=25% Similarity=0.470 Sum_probs=98.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCC-CCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-
Q 008214 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVND-CLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK- 525 (573)
Q Consensus 448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~- 525 (573)
|.|.|+|++|++++..+ .|.+||||++.+++ .++||+++.+ +.||+|||+|.|.+.+. ...|.|+|||++.++.
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~--~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~d 77 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGH--AVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMD 77 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECC--EEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCC
Confidence 78999999999988777 78999999999986 6779999866 79999999999999854 4679999999999876
Q ss_pred ceeEEEEEEcc-eeeecCeEeEEEEcCC----CCCeEEEEEEEE
Q 008214 526 DYMGRCILTLT-RVILEGEYTDCFELDG----TKSGKLKLHLKW 564 (573)
Q Consensus 526 d~lG~~~i~l~-~l~~~~~~~~~~~L~~----~~~G~i~l~l~~ 564 (573)
++||.+.+++. .+..+...++||+|.+ ...|+|+|+++|
T Consensus 78 d~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 78 ERIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred ceEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 69999999996 4666666799999976 457999999987
No 7
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.85 E-value=1.5e-20 Score=163.66 Aligned_cols=119 Identities=21% Similarity=0.480 Sum_probs=103.2
Q ss_pred EEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEec-----CCCcEEEEEEEeCCCC
Q 008214 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-----ESTQHLVVRIYDDEGI 338 (573)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~-----~~~~~l~i~v~d~~~~ 338 (573)
++|+|++|+||+.++..|.+||||+++++ +++++|++++++.||+|||+|.|.+.. ...+.|.++|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~---~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG---KEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEEC---CeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 47999999999999988999999999997 667899999999999999999999976 3567899999999998
Q ss_pred CCCCceEEEEEEccccC--CCceeEEEEEeeecccccCCCcceeEEEEEEE
Q 008214 339 QSSELIGCAQVRLCELE--PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELL 387 (573)
Q Consensus 339 ~~d~~lG~~~i~l~~l~--~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~ 387 (573)
++|++||++.++|+++. .+.....|++|.+... ...+.+|+|+++++
T Consensus 78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~--~~~~~~Gei~l~~~ 126 (126)
T cd08682 78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPG--KDDKERGEIEVDIQ 126 (126)
T ss_pred CCCceeEEEEEEHHHhhccCCCcccEEEECcCCCC--CCccccceEEEEeC
Confidence 88999999999999987 5667789999974322 34567899999863
No 8
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.83 E-value=4.2e-20 Score=159.04 Aligned_cols=117 Identities=35% Similarity=0.567 Sum_probs=102.8
Q ss_pred eEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeC-CCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCC
Q 008214 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 340 (573)
Q Consensus 262 G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~-~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~ 340 (573)
|.|+|+|++|++|++.+..+.+||||+++++ ++.++|+++. ++.||+|||+|.|.+.....+.|.|+|||++..+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~- 76 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG---GVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK- 76 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEEC---CCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-
Confidence 7899999999999999988999999999997 4677888874 5799999999999998766779999999999865
Q ss_pred CCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEE
Q 008214 341 SELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (573)
Q Consensus 341 d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (573)
|++||++.+++.++..+.....|++|.. +++..|+|+++++|
T Consensus 77 ~~~iG~~~~~l~~~~~~~~~~~w~~L~~------~~~~~G~i~l~l~f 118 (118)
T cd08681 77 PDLIGDTEVDLSPALKEGEFDDWYELTL------KGRYAGEVYLELTF 118 (118)
T ss_pred CcceEEEEEecHHHhhcCCCCCcEEecc------CCcEeeEEEEEEEC
Confidence 9999999999999877766789999853 34688999999876
No 9
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.83 E-value=9.3e-20 Score=157.52 Aligned_cols=121 Identities=33% Similarity=0.527 Sum_probs=106.9
Q ss_pred EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 008214 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (573)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~ 342 (573)
+|+|+|++|++|+..+..|.+||||++++. +...++|++++++.||+|||+|.|.+.+. .+.|.|+|||++..++|+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~--~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~ 77 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYG--GKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDD 77 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEEC--CEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCc
Confidence 478999999999999988999999999986 23578999999999999999999998765 468999999999988999
Q ss_pred ceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEee
Q 008214 343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (573)
Q Consensus 343 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p 390 (573)
+||.+.+++.++..+...+.|++|... +..+..|+|++.++|.|
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~~~~L~~~----~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 78 FMGSAFVDLSTLELNKPTEVKLKLEDP----NSDEDLGYISLVVTLTP 121 (121)
T ss_pred ceEEEEEEHHHcCCCCCeEEEEECCCC----CCccCceEEEEEEEECC
Confidence 999999999999988889999999642 23467999999999865
No 10
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.82 E-value=1.8e-19 Score=155.21 Aligned_cols=116 Identities=27% Similarity=0.539 Sum_probs=102.8
Q ss_pred EEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCCc
Q 008214 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (573)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~ 343 (573)
|+|+|++|++|++.+..+.+||||++++.+.+...++|++++++.||+|||+|.|.+.....+.|.|+|||++.. +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999988889999999999975445678999999999999999999999866667899999999988 8999
Q ss_pred eEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEE
Q 008214 344 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (573)
Q Consensus 344 lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (573)
||++.+++.++..+.....|++|. .+..|++++++.+
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~--------~~~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLN--------PQGKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECC--------CCCCceEEEEEEe
Confidence 999999999999998899999984 3457888888765
No 11
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.82 E-value=1.5e-19 Score=153.97 Aligned_cols=108 Identities=22% Similarity=0.369 Sum_probs=92.9
Q ss_pred EEEEEEEEeeeccCCCCCCCCCcEEEEEEec----CCCCeEEeeeeCCCCCceeccEEEEEEec---CCCcEEEEEEEeC
Q 008214 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP----LPEKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIYDD 335 (573)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~~~~T~~~~~~~nP~w~e~f~f~v~~---~~~~~l~i~v~d~ 335 (573)
.|+|+|++|++|+..+ .|.+||||++++.. ...++++|+++++++||+|||+|.|.+.. +....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 4899999999999887 49999999999842 22346789999999999999999999974 3345799999999
Q ss_pred CCCCCCCceEEEEEEccccCCCceeEEEEEeeeccc
Q 008214 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLD 371 (573)
Q Consensus 336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~ 371 (573)
+..++|++||++.+++.++..++....|++|.+...
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~~ 115 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIH 115 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCccc
Confidence 987889999999999999998888999999976543
No 12
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.82 E-value=1.6e-19 Score=156.32 Aligned_cols=115 Identities=37% Similarity=0.647 Sum_probs=104.1
Q ss_pred eEEEEEEEEeecCCCCCC------CCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCC
Q 008214 448 GVLSVTVILAENLPASDL------MGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD 521 (573)
Q Consensus 448 ~~L~V~v~~a~~L~~~~~------~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~ 521 (573)
|.|.|+|++|+||+..+. .|.+||||++++++ ..++|++++++.||.|||.|.|.+.+...+.|.|+|||++
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~--~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~ 78 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA--QTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDED 78 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC--EeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecC
Confidence 579999999999998764 36899999999976 7889999999999999999999998766789999999998
Q ss_pred CCCCceeEEEEEEcceeeecCeEeEEEEcCCCCCeEEEEEEEE
Q 008214 522 TFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKW 564 (573)
Q Consensus 522 ~~~~d~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~i~l~l~~ 564 (573)
..++++||++.++++++..++..++||+|.+..+|+|+++++|
T Consensus 79 ~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 79 PDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred CCCCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence 8755799999999999988777899999998889999999987
No 13
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.82 E-value=2.5e-19 Score=157.22 Aligned_cols=119 Identities=25% Similarity=0.464 Sum_probs=103.1
Q ss_pred CcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCC
Q 008214 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338 (573)
Q Consensus 259 ~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~ 338 (573)
...|.|+|+|++|++|++.+..|.+||||+++++ .+.++|++++++.||.|||+|.|.+.+...+.|.|+|||++..
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~---~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~ 88 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG---SQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFF 88 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC---CEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCC
Confidence 5789999999999999999988999999999986 6679999999999999999999999877778999999999998
Q ss_pred CCCCceEEEEEEccccCC-----CceeEEEEEeeecccccCCCcceeEEEEEEEE
Q 008214 339 QSSELIGCAQVRLCELEP-----GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (573)
Q Consensus 339 ~~d~~lG~~~i~l~~l~~-----~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (573)
++|++||++.+++.++.. ......|..+ .....|+|++++.+
T Consensus 89 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~--------~~~~~g~i~l~~~~ 135 (136)
T cd08375 89 SPDDFLGRTEIRVADILKETKESKGPITKRLLL--------HEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCeeEEEEEEHHHhccccccCCCcEEEEecc--------ccccceeEEEEEEe
Confidence 899999999999999865 2222234433 46788999999876
No 14
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.82 E-value=1.1e-19 Score=156.55 Aligned_cols=115 Identities=30% Similarity=0.533 Sum_probs=101.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccC-CCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCCc
Q 008214 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVN-DCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD 526 (573)
Q Consensus 448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d 526 (573)
|.|+|+|.+|++|+..+..+.+||||++.+++ .+++|+++. ++.||.|||.|.|.+..+..+.|.|+|||++..+++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~ 78 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG--VTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPD 78 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECC--CccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCc
Confidence 57999999999999999889999999999986 667888875 478999999999999876678999999999887767
Q ss_pred eeEEEEEEcceeeecCeEeEEEEcCCC--CCeEEEEEEEE
Q 008214 527 YMGRCILTLTRVILEGEYTDCFELDGT--KSGKLKLHLKW 564 (573)
Q Consensus 527 ~lG~~~i~l~~l~~~~~~~~~~~L~~~--~~G~i~l~l~~ 564 (573)
+||++.++++++..+....+||+|... ..|+|+++++|
T Consensus 79 ~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 79 LIGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred ceEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence 999999999998877677999999754 57999999986
No 15
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.82 E-value=2.3e-19 Score=154.12 Aligned_cols=116 Identities=30% Similarity=0.446 Sum_probs=100.7
Q ss_pred EEEEEEEEeee---ccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCC
Q 008214 263 TLEVKLVQAKG---LTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339 (573)
Q Consensus 263 ~L~V~v~~a~~---L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~ 339 (573)
.|.|+|++|++ |..+|..|.+||||+++++ .++.+|++++++.||+|||+|.|.+.+.. ..|.|+|||++..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g---~~~~rTk~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYG---PKWVRTRTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEEC---CEEeEcCcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCCcc
Confidence 37899999999 8888989999999999997 67889999999999999999999998654 48999999998863
Q ss_pred ------CCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEE
Q 008214 340 ------SSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHL 384 (573)
Q Consensus 340 ------~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l 384 (573)
+|++||++.+++..+..+.....|++|.... .+..+..|+|+.
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~--~~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLN--PSGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCC--CCCccCCcEEEe
Confidence 8999999999999999998899999997543 124567777764
No 16
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.82 E-value=9e-20 Score=152.87 Aligned_cols=108 Identities=16% Similarity=0.216 Sum_probs=92.3
Q ss_pred cccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecC-CCCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEE
Q 008214 256 LELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL-PEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 332 (573)
Q Consensus 256 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v 332 (573)
.+....|.|+|+|++|++|+ . .|.+||||++++.+. +..+++|+++++|+||+|||+|.|.+... ....|.|.|
T Consensus 8 ~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V 84 (118)
T cd08677 8 SYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTL 84 (118)
T ss_pred EEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEE
Confidence 45577899999999999998 2 467999999999753 33578999999999999999999998643 567899999
Q ss_pred EeCCCCCCCCceEEEEEEccccCCCceeEEEEEe
Q 008214 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366 (573)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 366 (573)
||+|+++++++||++.+++.++..+...++|..|
T Consensus 85 ~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 85 RCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 9999999999999999999988666667788653
No 17
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.81 E-value=3.6e-19 Score=152.73 Aligned_cols=115 Identities=29% Similarity=0.445 Sum_probs=103.8
Q ss_pred EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 008214 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (573)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~ 342 (573)
+++|+|++|++|+..+..+.+||||+++++ ++.++|++++++.||.|||+|.|.+.+...+.|.++|||++..++|+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~ 77 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLG---NEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDE 77 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEEC---CEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 478999999999999988999999999996 56789999999999999999999998776789999999999988999
Q ss_pred ceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEe
Q 008214 343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (573)
Q Consensus 343 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (573)
+||++.++|+++..+...+.|++|.+ ..|+|++.+.|.
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~---------~~G~~~~~~~~~ 115 (116)
T cd08376 78 FIGRCEIDLSALPREQTHSLELELED---------GEGSLLLLLTLT 115 (116)
T ss_pred eEEEEEEeHHHCCCCCceEEEEEccC---------CCcEEEEEEEec
Confidence 99999999999998888999999842 259999998873
No 18
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.81 E-value=2.2e-19 Score=156.30 Aligned_cols=112 Identities=22% Similarity=0.455 Sum_probs=97.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEecc-----CCCCEEEEEEEeCCCCC
Q 008214 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED-----GLHDMLIAEVWDHDTFG 524 (573)
Q Consensus 450 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~-----~~~~~L~i~V~d~~~~~ 524 (573)
++|+|++|+||+..+..|.+||||++.+++ .++||++++++.||+|||.|.|.+.. +....|.++|||++..+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~--~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~ 78 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK--EKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLG 78 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECC--eeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccC
Confidence 479999999999998889999999999975 67899999999999999999999976 35678999999999876
Q ss_pred C-ceeEEEEEEcceee--ecCeEeEEEEcCCC------CCeEEEEEEE
Q 008214 525 K-DYMGRCILTLTRVI--LEGEYTDCFELDGT------KSGKLKLHLK 563 (573)
Q Consensus 525 ~-d~lG~~~i~l~~l~--~~~~~~~~~~L~~~------~~G~i~l~l~ 563 (573)
. ++||++.|+++++. .+....+||+|.+. ..|+|+++++
T Consensus 79 ~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 79 LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 4 79999999999987 44556899999742 3699999875
No 19
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.81 E-value=2.7e-19 Score=155.93 Aligned_cols=121 Identities=29% Similarity=0.412 Sum_probs=104.1
Q ss_pred EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCC---CcEEEEEEEeCCCCC
Q 008214 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES---TQHLVVRIYDDEGIQ 339 (573)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~---~~~l~i~v~d~~~~~ 339 (573)
.|+|+|++|++|+..+..|.+||||+++++ ++.++|++++++.||+|||.|.|.+.++. ...|.|+|||++...
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFD---GQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEEC---CEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 489999999999999988999999999997 56789999999999999999999987542 358999999999876
Q ss_pred -CCCceEEEEEEccccC-CCceeEEEEEeeecccccCCCcceeEEEEEEEEe
Q 008214 340 -SSELIGCAQVRLCELE-PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (573)
Q Consensus 340 -~d~~lG~~~i~l~~l~-~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (573)
+|++||++.++++++. .+.....|++|.+.. ...+.+|+|++++.+.
T Consensus 78 ~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 78 RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRG---LFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCC---CCCCccEEEEEEEEEc
Confidence 8999999999999997 567788999997542 1345789999998863
No 20
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.81 E-value=3.5e-19 Score=158.76 Aligned_cols=125 Identities=22% Similarity=0.405 Sum_probs=106.6
Q ss_pred EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCC-CCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCC
Q 008214 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINN-DLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS 341 (573)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~-~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d 341 (573)
.|+|+|++|++|+.++..|.+||||+++++ ++..+|+++.+ +.||+|||+|.|.+.++..+.+.|+|||++..++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~---~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~d 77 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLG---NQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKD 77 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEEC---CEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCC
Confidence 378999999999999999999999999997 57889998866 69999999999999876667999999999988889
Q ss_pred CceEEEEEEccccCCC----ceeEEEEEeeecccc---cCCCcceeEEEEEEEEee
Q 008214 342 ELIGCAQVRLCELEPG----KVKDVWLKLVKDLDV---QRDTKYRGQVHLELLYCP 390 (573)
Q Consensus 342 ~~lG~~~i~l~~l~~~----~~~~~w~~L~~~~~~---~~~~~~~G~i~l~l~~~p 390 (573)
++||++.++|.++..+ ...+.|++|.+.... .+..+.+|+|++.+.|.+
T Consensus 78 d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 78 EPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred CeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 9999999999998643 456899999865321 134577899999999963
No 21
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.81 E-value=4.4e-19 Score=152.78 Aligned_cols=115 Identities=26% Similarity=0.526 Sum_probs=103.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEcC-cceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCCcee
Q 008214 450 LSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYM 528 (573)
Q Consensus 450 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d~l 528 (573)
|+|+|++|++|+..+..+.+||||++++++ ...++||++++++.||+|||+|.|.+.....+.|.|+|||++..++++|
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~i 81 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHL 81 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCccc
Confidence 789999999999988888999999999963 2467899999999999999999999986656789999999998855799
Q ss_pred EEEEEEcceeeecCeEeEEEEcCCCCCeEEEEEEEE
Q 008214 529 GRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKW 564 (573)
Q Consensus 529 G~~~i~l~~l~~~~~~~~~~~L~~~~~G~i~l~l~~ 564 (573)
|++.++++++..+.....||+|.+.+.|++++++..
T Consensus 82 G~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~ 117 (119)
T cd04036 82 GTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL 117 (119)
T ss_pred EEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence 999999999988888899999999889999998865
No 22
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.81 E-value=4.1e-19 Score=152.62 Aligned_cols=109 Identities=28% Similarity=0.435 Sum_probs=95.9
Q ss_pred EEEEEEEEeec---CCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCC--
Q 008214 449 VLSVTVILAEN---LPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF-- 523 (573)
Q Consensus 449 ~L~V~v~~a~~---L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~-- 523 (573)
.|+|+|++|++ |+..+..|.+||||++++++ ++.||++++++.||+|||+|.|.+.++ ...|.|+|||++..
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~--~~~rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~~~~ 77 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP--KWVRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQSHW 77 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECC--EEeEcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCCccc
Confidence 48999999999 88889999999999999976 688999999999999999999999865 45899999999886
Q ss_pred -----CCceeEEEEEEcceeeecCeEeEEEEcCC------CCCeEEEE
Q 008214 524 -----GKDYMGRCILTLTRVILEGEYTDCFELDG------TKSGKLKL 560 (573)
Q Consensus 524 -----~~d~lG~~~i~l~~l~~~~~~~~~~~L~~------~~~G~i~l 560 (573)
++++||++.++++++..+.....||+|.. .+.|+|++
T Consensus 78 ~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 78 KEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred cccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 45799999999999988888899999973 24677764
No 23
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.81 E-value=3.7e-19 Score=155.59 Aligned_cols=123 Identities=33% Similarity=0.539 Sum_probs=106.4
Q ss_pred eEEEEEEEEeeeccCCCC--CCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCC
Q 008214 262 GTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339 (573)
Q Consensus 262 G~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~ 339 (573)
|.|+|+|++|++|+..+. .+.+||||+++++ .++++|++++++.||.|||+|.|.+.+...+.|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~---~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG---AQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC---CEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence 789999999999999888 7899999999986 56789999999999999999999998766789999999999888
Q ss_pred CCCceEEEEEEccccC---CCceeEEEEEeeecccccCCCcceeEEEEEEEE
Q 008214 340 SSELIGCAQVRLCELE---PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (573)
Q Consensus 340 ~d~~lG~~~i~l~~l~---~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (573)
++++||++.+++.++. .......|+.|.+... ......+|+|++++.|
T Consensus 78 ~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~-~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRP-GKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCcceEEEEEHHHhhcccccCccceeEEccCccc-CccccccceEEEEEEC
Confidence 9999999999999986 3344679999975432 2345689999999875
No 24
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.81 E-value=7.2e-19 Score=150.87 Aligned_cols=114 Identities=33% Similarity=0.584 Sum_probs=103.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-ce
Q 008214 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DY 527 (573)
Q Consensus 449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d~ 527 (573)
+++|+|++|++|+..+..+.+||||++++++ .+++|+++++|.||.|||+|.|.+.++....|.|+|||++..++ ++
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~--~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~ 78 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGN--EKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEF 78 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECC--EeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCe
Confidence 4789999999999998889999999999975 67899999999999999999999987667899999999998765 69
Q ss_pred eEEEEEEcceeeecCeEeEEEEcCCCCCeEEEEEEEEE
Q 008214 528 MGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWM 565 (573)
Q Consensus 528 lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~i~l~l~~~ 565 (573)
||++.++|+++..+.....||+|.+. .|+|++.+.|.
T Consensus 79 iG~~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~~ 115 (116)
T cd08376 79 IGRCEIDLSALPREQTHSLELELEDG-EGSLLLLLTLT 115 (116)
T ss_pred EEEEEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEec
Confidence 99999999999888888999999876 59999998874
No 25
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.81 E-value=7.7e-19 Score=154.18 Aligned_cols=118 Identities=31% Similarity=0.562 Sum_probs=105.8
Q ss_pred eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC
Q 008214 446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK 525 (573)
Q Consensus 446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~ 525 (573)
..|.|+|+|++|++|+..+..|.+||||+++++. .+++|++++++.||.|||+|.|.+.++..+.|.|+|||++..++
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~--~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~ 90 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS--QEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP 90 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC--EeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence 4599999999999999999899999999999975 68899999999999999999999987777899999999998765
Q ss_pred -ceeEEEEEEcceeee-----cCeEeEEEEcCCCCCeEEEEEEEEE
Q 008214 526 -DYMGRCILTLTRVIL-----EGEYTDCFELDGTKSGKLKLHLKWM 565 (573)
Q Consensus 526 -d~lG~~~i~l~~l~~-----~~~~~~~~~L~~~~~G~i~l~l~~~ 565 (573)
++||++.+++.++.. .....+|.++.+...|+|++++.+.
T Consensus 91 d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~~ 136 (136)
T cd08375 91 DDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDLQ 136 (136)
T ss_pred CCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEeC
Confidence 699999999999986 3445788999888899999999873
No 26
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.80 E-value=8.4e-19 Score=152.06 Aligned_cols=121 Identities=24% Similarity=0.486 Sum_probs=105.7
Q ss_pred EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 008214 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (573)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~ 342 (573)
.|+|+|++|++|...+..+.+||||+++++ +..++|++++++.||+|||+|.|.+.+.....|.|+|||++..++++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~ 77 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYN---GQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKND 77 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEEC---CEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 389999999999999988899999999986 56789999999999999999999998766678999999999988999
Q ss_pred ceEEEEEEccccCCCceeEEEEEeeecccc-cCCCcceeEEEEEE
Q 008214 343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDV-QRDTKYRGQVHLEL 386 (573)
Q Consensus 343 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~~~~~G~i~l~l 386 (573)
+||.+.+++.++..+.....|+.|.+.... ...++..|.|++.+
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 78 FLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 999999999999877777899999764432 23567899999875
No 27
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.80 E-value=1.6e-18 Score=149.84 Aligned_cols=116 Identities=28% Similarity=0.457 Sum_probs=103.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-ce
Q 008214 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DY 527 (573)
Q Consensus 449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d~ 527 (573)
.|+|+|++|++|+..+..|.+||||++.+++ ...++|++++++.||.|||.|.|.+.++ ...|.|+|||++..++ ++
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~-~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~ 78 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGG-KTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDF 78 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECC-EEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcc
Confidence 3789999999999999889999999999974 3578999999999999999999999764 5789999999998854 79
Q ss_pred eEEEEEEcceeeecCeEeEEEEcCCC----CCeEEEEEEEEEe
Q 008214 528 MGRCILTLTRVILEGEYTDCFELDGT----KSGKLKLHLKWMP 566 (573)
Q Consensus 528 lG~~~i~l~~l~~~~~~~~~~~L~~~----~~G~i~l~l~~~p 566 (573)
||++.++++++..+...+.|++|.+. ..|+|++.+++.|
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 79 MGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred eEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence 99999999999988888999999644 3699999999986
No 28
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.80 E-value=5.1e-19 Score=152.51 Aligned_cols=105 Identities=27% Similarity=0.456 Sum_probs=93.8
Q ss_pred ceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEEE-e--cCCCcEEEEEEEeC
Q 008214 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIV-E--DESTQHLVVRIYDD 335 (573)
Q Consensus 261 ~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~v-~--~~~~~~l~i~v~d~ 335 (573)
.|.|.|+|++|++|+..+ .+.+||||++++.+.. ..+++|++++++.||+|||+|.|.+ . +.....|.|+|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 689999999999999999 8999999999998643 3468999999999999999999987 2 33567899999999
Q ss_pred CCCCCCCceEEEEEEccccCCCceeEEEEEe
Q 008214 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366 (573)
Q Consensus 336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 366 (573)
+..+++++||++.++|.++..++....|++|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999999888778899986
No 29
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.80 E-value=1.4e-18 Score=149.55 Aligned_cols=119 Identities=29% Similarity=0.450 Sum_probs=101.6
Q ss_pred EEEEEEEeeeccCCC-CCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 008214 264 LEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (573)
Q Consensus 264 L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~ 342 (573)
|.|+|++|+||+..+ ..|.+||||+++++ +...++|++++++.||+|||+|.|.+.+. ...|.|.|||++..++|+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~--~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~ 78 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD--QEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDS 78 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEEC--CccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCc
Confidence 679999999999864 45789999999996 23468999999999999999999999753 468999999999999999
Q ss_pred ceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEE
Q 008214 343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (573)
Q Consensus 343 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (573)
+||.+.++++++..+...+.|++|.+.. ...+.+|+|++++.+
T Consensus 79 ~iG~~~i~l~~l~~~~~~~~w~~L~~~~---~~~~~~G~i~l~~~~ 121 (121)
T cd08401 79 VIGKVAIKKEDLHKYYGKDTWFPLQPVD---ADSEVQGKVHLELRL 121 (121)
T ss_pred eEEEEEEEHHHccCCCCcEeeEEEEccC---CCCcccEEEEEEEEC
Confidence 9999999999998888889999997542 234568999998763
No 30
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.79 E-value=1.2e-18 Score=150.26 Aligned_cols=103 Identities=31% Similarity=0.509 Sum_probs=90.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEe-c--cCCCCEEEEEEEeCC
Q 008214 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVV-E--DGLHDMLIAEVWDHD 521 (573)
Q Consensus 448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v-~--~~~~~~L~i~V~d~~ 521 (573)
+.|.|.|++|+||+..+ .+.+||||++++... ..++||++++++.||.|||+|.|.+ . +.....|.|+|||++
T Consensus 13 ~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d 91 (122)
T cd08381 13 GTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD 91 (122)
T ss_pred CEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence 78999999999999999 889999999999632 3578999999999999999999987 2 345679999999999
Q ss_pred CCCC-ceeEEEEEEcceeeecCeEeEEEEcC
Q 008214 522 TFGK-DYMGRCILTLTRVILEGEYTDCFELD 551 (573)
Q Consensus 522 ~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~ 551 (573)
..++ ++||++.++|+++...+....||+|.
T Consensus 92 ~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~ 122 (122)
T cd08381 92 SLVENEFLGGVCIPLKKLDLSQETEKWYPLG 122 (122)
T ss_pred CCcCCcEEEEEEEeccccccCCCccceEECc
Confidence 8865 69999999999998777778999973
No 31
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.79 E-value=2e-18 Score=149.95 Aligned_cols=122 Identities=21% Similarity=0.376 Sum_probs=102.5
Q ss_pred ceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCC
Q 008214 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 340 (573)
Q Consensus 261 ~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~ 340 (573)
...|+|+|++|+||+.+ +.+||||+++++ +.+..+|++ .++.||.|||+|.|.+.....+.+.|.|||++..++
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~--~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~ 76 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLN--EVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSK 76 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEEC--CEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCC
Confidence 35799999999999864 478999999996 234568887 468999999999998765554689999999999999
Q ss_pred CCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEee
Q 008214 341 SELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (573)
Q Consensus 341 d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p 390 (573)
|++||.+.++|.++..+...+.|+.|.+.. ....+..|+|+++++|.+
T Consensus 77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~--~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 77 DSEIAEVTVQLSKLQNGQETDEWYPLSSAS--PLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCeEEEEEEEHhHccCCCcccEeEEcccCC--CCCCCcCcEEEEEEEEEc
Confidence 999999999999999888889999997642 134567899999999974
No 32
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.79 E-value=1e-18 Score=155.71 Aligned_cols=119 Identities=25% Similarity=0.305 Sum_probs=102.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCC-CCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCC-Cc
Q 008214 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVND-CLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG-KD 526 (573)
Q Consensus 449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~-~d 526 (573)
.|.|+|.+|++|+..+..|.+||||++.+++ ++++|+++.+ |.||+|||.|+|.+.++..+.|.|+|||++..+ ++
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~--~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd 78 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN--QVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDE 78 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECC--EEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCC
Confidence 3889999999999999999999999999986 7889998866 699999999999998776779999999998764 47
Q ss_pred eeEEEEEEcceeeec----CeEeEEEEcCCCC-----------CeEEEEEEEEEecCC
Q 008214 527 YMGRCILTLTRVILE----GEYTDCFELDGTK-----------SGKLKLHLKWMPQPI 569 (573)
Q Consensus 527 ~lG~~~i~l~~l~~~----~~~~~~~~L~~~~-----------~G~i~l~l~~~p~~~ 569 (573)
+||++.++|+++..+ ....+||+|.+.. +|+|+|.++|.+.+.
T Consensus 79 ~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~ 136 (150)
T cd04019 79 PLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYH 136 (150)
T ss_pred eEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcce
Confidence 999999999998653 2358999997542 499999999986553
No 33
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.79 E-value=9.6e-19 Score=151.37 Aligned_cols=115 Identities=35% Similarity=0.633 Sum_probs=101.9
Q ss_pred eEEEEEEEEeeeccCCCC------CCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeC
Q 008214 262 GTLEVKLVQAKGLTNKDL------IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD 335 (573)
Q Consensus 262 G~L~V~v~~a~~L~~~d~------~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~ 335 (573)
|.|+|+|++|++|+..+. .|.+||||+++++ ++.++|++++++.||+|||+|.|.+.+...+.|.|+|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG---AQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEEC---CEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence 789999999999998774 3689999999997 5789999999999999999999999876678999999999
Q ss_pred CCCCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEE
Q 008214 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (573)
Q Consensus 336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (573)
+.. +|++||.+.+++.++..+...+.|++|. ....|+|+++++|
T Consensus 78 ~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~--------~~~~G~~~~~~~~ 121 (121)
T cd08391 78 DPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLE--------DVKSGRLHLKLEW 121 (121)
T ss_pred CCC-CCCcEEEEEEEHHHhcccCccceEEECc--------CCCCceEEEEEeC
Confidence 987 8999999999999998877788999984 2367999998764
No 34
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.79 E-value=1.1e-18 Score=152.70 Aligned_cols=115 Identities=36% Similarity=0.666 Sum_probs=101.7
Q ss_pred eEEEEEEEEeecCCCCCC--CCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC
Q 008214 448 GVLSVTVILAENLPASDL--MGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK 525 (573)
Q Consensus 448 ~~L~V~v~~a~~L~~~~~--~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~ 525 (573)
|.|+|+|++|++|+..+. .+.+||||++.++. .+++|++++++.||.|||+|.|.+.++....|.|+|||++..+.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~--~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~ 78 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA--QRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAG 78 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECC--EEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCC
Confidence 679999999999999888 88999999999975 67899999999999999999999987667899999999998754
Q ss_pred -ceeEEEEEEcceeee---cCeEeEEEEcCCC-------CCeEEEEEEEE
Q 008214 526 -DYMGRCILTLTRVIL---EGEYTDCFELDGT-------KSGKLKLHLKW 564 (573)
Q Consensus 526 -d~lG~~~i~l~~l~~---~~~~~~~~~L~~~-------~~G~i~l~l~~ 564 (573)
++||++.+++.++.. .+...+||+|.+. .+|+|+++++|
T Consensus 79 ~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 79 KDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 799999999999873 2345899999765 48999999987
No 35
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.79 E-value=1.9e-18 Score=152.07 Aligned_cols=105 Identities=27% Similarity=0.369 Sum_probs=90.3
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEE-eCCC
Q 008214 448 GVLSVTVILAENLPASD-LMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVW-DHDT 522 (573)
Q Consensus 448 ~~L~V~v~~a~~L~~~~-~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~-d~~~ 522 (573)
+.|.|+|++|+||+..+ ..|.+||||++++... ..++||+++++|.||+|||+|.|.+. ..+..|.|+|| |++.
T Consensus 29 ~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~~ 107 (146)
T cd04028 29 GQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYGR 107 (146)
T ss_pred CEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCCC
Confidence 68999999999999864 5678999999999532 24789999999999999999999998 66789999999 5666
Q ss_pred CCC-ceeEEEEEEcceeeecCeEeEEEEcCCC
Q 008214 523 FGK-DYMGRCILTLTRVILEGEYTDCFELDGT 553 (573)
Q Consensus 523 ~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~ 553 (573)
.++ ++||.+.|+|+++..+.....||+|.+.
T Consensus 108 ~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 108 MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 544 6999999999998777777899999764
No 36
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.79 E-value=2.3e-18 Score=149.77 Aligned_cols=121 Identities=30% Similarity=0.496 Sum_probs=104.0
Q ss_pred EEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCCc
Q 008214 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (573)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~ 343 (573)
|.|+|++|++|+. ..|.+||||++++.. ..+.++|++++++.||+|||.|.|.+.. ..+.|.|+|||++..++|++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDE-PPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECC-CCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCce
Confidence 5799999999987 678999999999862 2456899999999999999999999863 46789999999999889999
Q ss_pred eEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEee
Q 008214 344 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (573)
Q Consensus 344 lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p 390 (573)
||++.+++.++..+.....|++|.+... ......|+|++++.|.+
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~--~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRPY--EGDSVSGSITVEFLFME 121 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCCC--CCCCcceEEEEEEEEec
Confidence 9999999999988877889999975421 24568999999999975
No 37
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.79 E-value=1.2e-18 Score=153.30 Aligned_cols=109 Identities=26% Similarity=0.436 Sum_probs=95.9
Q ss_pred ceEEEEEEEEeeeccCCC-CCCCCCcEEEEEEecCCC--CeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEE-eCC
Q 008214 261 VGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY-DDE 336 (573)
Q Consensus 261 ~G~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~-d~~ 336 (573)
.|.|.|+|++|+||..++ ..|.+||||++++.+.+. .++||+++++++||+|||+|.|.+. .....|.++|| |++
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~ 106 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYG 106 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCC
Confidence 689999999999999864 568899999999986443 3789999999999999999999998 66779999999 678
Q ss_pred CCCCCCceEEEEEEccccCCCceeEEEEEeeecc
Q 008214 337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDL 370 (573)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~ 370 (573)
.+.++++||++.++|+++..+.....|++|.+..
T Consensus 107 ~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~ 140 (146)
T cd04028 107 RMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTS 140 (146)
T ss_pred CCCCCceEEEEEEEcccccCCCCceeEEecCCcc
Confidence 8888999999999999997777788999997643
No 38
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.79 E-value=1.1e-18 Score=146.23 Aligned_cols=102 Identities=19% Similarity=0.295 Sum_probs=86.3
Q ss_pred eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC--cceeEeecccCCCCCCeeeeEEEEEecc--CCCCEEEEEEEeCC
Q 008214 446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKK--SETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD 521 (573)
Q Consensus 446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~--~~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~V~d~~ 521 (573)
..+.|+|+|++|++|+ ..|.+||||++++.. ...+++|+++++|.||+|||+|.|.+.. ..+..|.|+|||.|
T Consensus 12 ~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~D 88 (118)
T cd08677 12 QKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCD 88 (118)
T ss_pred cCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCC
Confidence 3589999999999998 246699999999953 2357799999999999999999999873 35678999999999
Q ss_pred CCCC-ceeEEEEEEcceeeecCeEeEEEEc
Q 008214 522 TFGK-DYMGRCILTLTRVILEGEYTDCFEL 550 (573)
Q Consensus 522 ~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L 550 (573)
.+++ ++||++.++++++.......+|..|
T Consensus 89 rfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 89 RFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CCCCCceEEEEEEccccccCCccccchhcC
Confidence 9976 7999999999998666666778654
No 39
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.79 E-value=9.9e-19 Score=151.61 Aligned_cols=110 Identities=23% Similarity=0.428 Sum_probs=96.2
Q ss_pred cCcceEEEEEEEEeeeccCCCCC-CCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEEEec--CCCcEEEEEE
Q 008214 258 LKPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRI 332 (573)
Q Consensus 258 ~~~~G~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~v~~--~~~~~l~i~v 332 (573)
.+..+.|.|+|++|+||+.++.. |.+||||++++.+.. ..+++|++++++.||+|||+|.|.+.. .....|.|+|
T Consensus 11 ~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V 90 (125)
T cd08393 11 DPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSV 90 (125)
T ss_pred ECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 35678999999999999999875 899999999998644 345799999999999999999999864 3456899999
Q ss_pred EeCCCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (573)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 367 (573)
||++..+++++||++.++|.++..+.....|++|+
T Consensus 91 ~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 91 WHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred EeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 99999999999999999999998777788999873
No 40
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.78 E-value=7.5e-19 Score=152.60 Aligned_cols=97 Identities=34% Similarity=0.608 Sum_probs=89.6
Q ss_pred CcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCC
Q 008214 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338 (573)
Q Consensus 259 ~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~ 338 (573)
...|.|+|+|++|.+|..+|..+++||||.+.++ +++.+|+++++++||+|||+|.|.+.++. ..|.+.|||+|.+
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg---~q~lkT~~v~~n~NPeWNe~ltf~v~d~~-~~lkv~VyD~D~f 78 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELG---NQKLKTRVVYKNLNPEWNEELTFTVKDPN-TPLKVTVYDKDTF 78 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEEC---CeeeeeeeecCCCCCcccceEEEEecCCC-ceEEEEEEeCCCC
Confidence 3579999999999999999988999999999998 88899999999999999999999999874 5899999999999
Q ss_pred CCCCceEEEEEEccccCCCce
Q 008214 339 QSSELIGCAQVRLCELEPGKV 359 (573)
Q Consensus 339 ~~d~~lG~~~i~l~~l~~~~~ 359 (573)
++||++|.|+|+|..+.....
T Consensus 79 s~dD~mG~A~I~l~p~~~~~~ 99 (168)
T KOG1030|consen 79 SSDDFMGEATIPLKPLLEAQK 99 (168)
T ss_pred CcccccceeeeccHHHHHHhh
Confidence 999999999999999865543
No 41
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.78 E-value=3.7e-18 Score=148.53 Aligned_cols=116 Identities=24% Similarity=0.457 Sum_probs=101.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-cee
Q 008214 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYM 528 (573)
Q Consensus 450 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d~l 528 (573)
|.|+|++|+||+. ..|.+||||+++++....+++|+++++|.||+|||.|.|.+.. ....|.|+|||++..++ ++|
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~l 77 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKFL 77 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCceE
Confidence 5799999999998 6789999999999754467899999999999999999999863 46789999999998765 699
Q ss_pred EEEEEEcceeeecCeEeEEEEcCCC------CCeEEEEEEEEEecC
Q 008214 529 GRCILTLTRVILEGEYTDCFELDGT------KSGKLKLHLKWMPQP 568 (573)
Q Consensus 529 G~~~i~l~~l~~~~~~~~~~~L~~~------~~G~i~l~l~~~p~~ 568 (573)
|++.+++.++.......+||+|.+. ..|+|+++++|.+..
T Consensus 78 G~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 78 GLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred EEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 9999999999988878899999744 489999999998754
No 42
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.78 E-value=2.6e-18 Score=148.96 Aligned_cols=105 Identities=28% Similarity=0.455 Sum_probs=90.2
Q ss_pred eeEEEEEEEEeecCCCCCCC-CCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEecc--CCCCEEEEEEEeC
Q 008214 447 RGVLSVTVILAENLPASDLM-GKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDH 520 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~~~-~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~V~d~ 520 (573)
.+.|.|+|++|+||+..+.. |.+||||++++... ..++||++++++.||+|||+|.|.+.. .....|.|+|||.
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~ 93 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHR 93 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeC
Confidence 36899999999999998875 88999999999532 246799999999999999999999863 3456899999999
Q ss_pred CCCCC-ceeEEEEEEcceeeecCeEeEEEEcC
Q 008214 521 DTFGK-DYMGRCILTLTRVILEGEYTDCFELD 551 (573)
Q Consensus 521 ~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~ 551 (573)
+..++ ++||.+.|+|.++........||+|.
T Consensus 94 ~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 94 DSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred CCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 98766 69999999999997776678999984
No 43
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.78 E-value=2.3e-18 Score=150.15 Aligned_cols=115 Identities=25% Similarity=0.416 Sum_probs=99.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCC---CCEEEEEEEeCCCCC-
Q 008214 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL---HDMLIAEVWDHDTFG- 524 (573)
Q Consensus 449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~---~~~L~i~V~d~~~~~- 524 (573)
.|+|+|++|++|+..+..|.+||||++++++ .++||++++++.||.|||.|.|.+.++. ...|.|+|||++..+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~--~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~ 78 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG--QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGR 78 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC--EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcC
Confidence 3899999999999998889999999999976 6789999999999999999999997542 358999999998774
Q ss_pred -CceeEEEEEEcceeee-cCeEeEEEEcCCC-----CCeEEEEEEEEE
Q 008214 525 -KDYMGRCILTLTRVIL-EGEYTDCFELDGT-----KSGKLKLHLKWM 565 (573)
Q Consensus 525 -~d~lG~~~i~l~~l~~-~~~~~~~~~L~~~-----~~G~i~l~l~~~ 565 (573)
+++||++.++++++.. +....+||+|+.. .+|+|+|++.++
T Consensus 79 ~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 79 RRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 5799999999999973 4556899999753 489999999875
No 44
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.78 E-value=1.8e-18 Score=150.19 Aligned_cols=110 Identities=35% Similarity=0.559 Sum_probs=98.6
Q ss_pred cCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEEeC
Q 008214 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDD 335 (573)
Q Consensus 258 ~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~d~ 335 (573)
.+..|.|.|+|++|++|+.++..|.+||||++++.+.+.+.++|++++++.||+|||+|.|.+... ....|.|+|||+
T Consensus 12 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~ 91 (124)
T cd08387 12 DKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDF 91 (124)
T ss_pred CCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEEC
Confidence 356799999999999999999889999999999976556678999999999999999999998643 356899999999
Q ss_pred CCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (573)
Q Consensus 336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 367 (573)
+.++++++||++.++++++..+...+.|++|+
T Consensus 92 ~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 92 DQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 99889999999999999998777889999984
No 45
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.78 E-value=2.6e-18 Score=147.85 Aligned_cols=113 Identities=23% Similarity=0.455 Sum_probs=98.0
Q ss_pred EEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCCc
Q 008214 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (573)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~ 343 (573)
|.|+|++|++|+.. .+||||+++++ .+..+|++++++.||+|||+|.|.+.+...+.|.++|||++.. ++++
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~---~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~ 73 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLG---NYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDF 73 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEEC---CccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCce
Confidence 78999999999876 78999999997 4678999999999999999999998876678999999999976 7999
Q ss_pred eEEEEEEccccCCC-----ceeEEEEEeeecccccCCCcceeEEEEEEEE
Q 008214 344 IGCAQVRLCELEPG-----KVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (573)
Q Consensus 344 lG~~~i~l~~l~~~-----~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (573)
||++.++++++... .....|++|.... ..+.+|+|++++.|
T Consensus 74 lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~----~~~~~G~i~l~~~~ 119 (121)
T cd08378 74 LGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK----GGRVGGELMLAVWF 119 (121)
T ss_pred eeeEEEEhHhCcCCCCCCCCCCcceEEccCCC----CCccceEEEEEEEe
Confidence 99999999998543 2356999997542 35788999999987
No 46
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.78 E-value=2.5e-18 Score=148.91 Aligned_cols=110 Identities=18% Similarity=0.336 Sum_probs=96.3
Q ss_pred ccCcceEEEEEEEEeeeccCCCC-CCCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEE
Q 008214 257 ELKPVGTLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVR 331 (573)
Q Consensus 257 ~~~~~G~L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~ 331 (573)
+....|.|.|+|++|+||+..+. .|.+||||++++.+.+ ..++||++++++.||+|||+|.|.+... ....|.|+
T Consensus 10 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~ 89 (125)
T cd04029 10 YDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS 89 (125)
T ss_pred EECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 34578999999999999998775 4789999999998644 3467999999999999999999998643 45689999
Q ss_pred EEeCCCCCCCCceEEEEEEccccCCCceeEEEEEe
Q 008214 332 IYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366 (573)
Q Consensus 332 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 366 (573)
|||++..+++++||++.++|.++......+.|++|
T Consensus 90 V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 90 VWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred EEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 99999999999999999999999888889999987
No 47
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.77 E-value=2.9e-18 Score=147.64 Aligned_cols=111 Identities=29% Similarity=0.474 Sum_probs=96.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCCcee
Q 008214 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYM 528 (573)
Q Consensus 449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d~l 528 (573)
.|+|+|++|+||+.. .+||||++++++ .+.||++++++.||+|||+|.|.+.++....|.++|||++..++++|
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~--~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~l 74 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGN--YKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFL 74 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECC--ccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCcee
Confidence 389999999999887 689999999975 67899999999999999999999987677899999999998766899
Q ss_pred EEEEEEcceeeecC-----eEeEEEEcCCCC----CeEEEEEEEEE
Q 008214 529 GRCILTLTRVILEG-----EYTDCFELDGTK----SGKLKLHLKWM 565 (573)
Q Consensus 529 G~~~i~l~~l~~~~-----~~~~~~~L~~~~----~G~i~l~l~~~ 565 (573)
|++.++++++.... ...+||+|.+.. .|+|++++.|-
T Consensus 75 G~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 75 GGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG 120 (121)
T ss_pred eeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence 99999999987542 246999997654 69999999873
No 48
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.77 E-value=5e-18 Score=147.05 Aligned_cols=105 Identities=24% Similarity=0.491 Sum_probs=90.4
Q ss_pred eeEEEEEEEEeecCCCCCC-CCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeC
Q 008214 447 RGVLSVTVILAENLPASDL-MGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDH 520 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~~-~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~ 520 (573)
.+.|.|+|++|+||+..+. .|.+||||++++... ..++||++++++.||.|||+|.|.+... ....|.|+|||+
T Consensus 14 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~ 93 (125)
T cd04029 14 TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHY 93 (125)
T ss_pred CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence 4789999999999998765 478999999999531 3467999999999999999999998642 456899999999
Q ss_pred CCCCC-ceeEEEEEEcceeeecCeEeEEEEcC
Q 008214 521 DTFGK-DYMGRCILTLTRVILEGEYTDCFELD 551 (573)
Q Consensus 521 ~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~ 551 (573)
+..++ ++||++.++|.++......+.||+|.
T Consensus 94 ~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 94 DRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred CCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 98766 69999999999998888889999984
No 49
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.77 E-value=6.6e-18 Score=152.16 Aligned_cols=122 Identities=27% Similarity=0.510 Sum_probs=103.4
Q ss_pred ceEEEEEEEEeeeccCCCC------------------------------CCCCCcEEEEEEecCCCCeEEeeeeCCCCCc
Q 008214 261 VGTLEVKLVQAKGLTNKDL------------------------------IGKSDPYAVLFVRPLPEKTKKSKTINNDLNP 310 (573)
Q Consensus 261 ~G~L~V~v~~a~~L~~~d~------------------------------~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP 310 (573)
.|.|.|+|++|++|+++|. .|.+||||++++++ .+..+|++++++.||
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~--~~~~rT~v~~~~~nP 83 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAG--ARVARTRVIENSENP 83 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECC--eEeeEEEEeCCCCCC
Confidence 5999999999999999872 46789999999972 345799999999999
Q ss_pred eeccEEEEEEecCCCcEEEEEEEeCCCCCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEE
Q 008214 311 IWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (573)
Q Consensus 311 ~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (573)
+|||+|.|.+.+. .+.|.|.|||++..+ +++||.+.++++++..+...+.|++|.... .+..+..|.|++++.|
T Consensus 84 ~WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~--~~~~~~~~~l~v~~~f 157 (158)
T cd04015 84 VWNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSN--GKPPKPGAKIRVSLQF 157 (158)
T ss_pred ccceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCC--CCCCCCCCEEEEEEEE
Confidence 9999999998754 468999999999874 689999999999998888889999997542 2244567899999988
No 50
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.77 E-value=4.3e-18 Score=147.95 Aligned_cols=122 Identities=28% Similarity=0.505 Sum_probs=101.9
Q ss_pred ceEEEEEEEEeeeccCCC-CCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCC
Q 008214 261 VGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339 (573)
Q Consensus 261 ~G~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~ 339 (573)
.|.|+|+|++|++|+..+ ..+.+||||++++... .+.++|++++++.||.|||.|.|.+. ...+.|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCC
Confidence 489999999999999755 3467899999999732 36789999999999999999999987 45679999999999988
Q ss_pred CCCceEEEEEEccccCCCceeE-EEEEeeecccccCCCcceeEEEEEEEEee
Q 008214 340 SSELIGCAQVRLCELEPGKVKD-VWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (573)
Q Consensus 340 ~d~~lG~~~i~l~~l~~~~~~~-~w~~L~~~~~~~~~~~~~G~i~l~l~~~p 390 (573)
+|++||.+.+++.++..+.... .|..+. ..++..|+|+++++|.|
T Consensus 79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~------~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 KDKLIGTAEFDLSSLLQNPEQENLTKNLL------RNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCceeEEEEEEHHHhccCccccCcchhhh------cCCccceEEEEEEEeCC
Confidence 9999999999999998766554 333332 35667899999999976
No 51
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.77 E-value=4e-18 Score=143.21 Aligned_cols=102 Identities=32% Similarity=0.481 Sum_probs=92.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCCcee
Q 008214 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYM 528 (573)
Q Consensus 449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d~l 528 (573)
.|.|+|++|++|+..+..+.+||||++++++ ++++|+++++|.||.|||.|.|.+.++..+.|.|+|||++. +++|
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~i 76 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGK--TTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSL 76 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECC--EEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCcc
Confidence 3889999999999988889999999999986 78899999999999999999999998777899999999887 6799
Q ss_pred EEEEEEcceeeecC--eEeEEEEcCCCC
Q 008214 529 GRCILTLTRVILEG--EYTDCFELDGTK 554 (573)
Q Consensus 529 G~~~i~l~~l~~~~--~~~~~~~L~~~~ 554 (573)
|++.++|.++.... ..++||+|.+.+
T Consensus 77 G~~~i~l~~l~~~~~~~~~~w~~L~~~g 104 (105)
T cd04050 77 GSLTLPLSELLKEPDLTLDQPFPLDNSG 104 (105)
T ss_pred EEEEEEHHHhhccccceeeeeEecCCCC
Confidence 99999999998664 468999998753
No 52
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.77 E-value=5e-18 Score=147.43 Aligned_cols=105 Identities=27% Similarity=0.459 Sum_probs=92.3
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC-cceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCCCC
Q 008214 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF 523 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~~~ 523 (573)
.+.|.|+|++|+||+..+..|.+||||++++.. ....++|++++++.||.|||+|.|.+... ....|.|+|||++..
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~ 94 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQF 94 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCC
Confidence 478999999999999999889999999999952 24578999999999999999999998743 356899999999887
Q ss_pred CC-ceeEEEEEEcceeeecCeEeEEEEcC
Q 008214 524 GK-DYMGRCILTLTRVILEGEYTDCFELD 551 (573)
Q Consensus 524 ~~-d~lG~~~i~l~~l~~~~~~~~~~~L~ 551 (573)
++ ++||++.++++++..++..+.||+|.
T Consensus 95 ~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 95 SRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCceeEEEEEecccccCCCCcceEEECc
Confidence 65 69999999999998777889999986
No 53
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.77 E-value=7.8e-18 Score=151.71 Aligned_cols=119 Identities=24% Similarity=0.461 Sum_probs=102.6
Q ss_pred ceeeEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEEcCcceeEeecccCCCCC
Q 008214 445 IIRGVLSVTVILAENLPASD------------------------------LMGKADPYVVLTMKKSETRNKTRVVNDCLN 494 (573)
Q Consensus 445 ~~~~~L~V~v~~a~~L~~~~------------------------------~~~~~dpyv~v~l~~~~~~~kT~~~~~t~n 494 (573)
..-|.|.|+|++|++|+++| ..|.+||||++.+++ .+..||++++++.|
T Consensus 4 llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~-~~~~rT~v~~~~~n 82 (158)
T cd04015 4 LLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAG-ARVARTRVIENSEN 82 (158)
T ss_pred EEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECC-eEeeEEEEeCCCCC
Confidence 44699999999999999876 346689999999975 34579999999999
Q ss_pred CeeeeEEEEEeccCCCCEEEEEEEeCCCCCCceeEEEEEEcceeeecCeEeEEEEcCCC------CCeEEEEEEEEE
Q 008214 495 PIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGT------KSGKLKLHLKWM 565 (573)
Q Consensus 495 P~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~L~~~------~~G~i~l~l~~~ 565 (573)
|+|||+|.|.+.+. .+.|.|+|||++..++++||++.++++++..+...++||+|.+. +.|+|+++++|.
T Consensus 83 P~WnE~F~~~~~~~-~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 83 PVWNESFHIYCAHY-ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred CccceEEEEEccCC-CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 99999999998754 46899999999988778999999999999887778999999542 368999999984
No 54
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.77 E-value=9.6e-18 Score=147.60 Aligned_cols=122 Identities=27% Similarity=0.470 Sum_probs=102.6
Q ss_pred EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC----CCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCC
Q 008214 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338 (573)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~ 338 (573)
.|+|+|++|++|+..+..|.+||||++++.+.. ...++|++++++.||.|||+|.|.+... ...|.|+|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 378999999999999988999999999997421 1257899999999999999999998743 46899999999998
Q ss_pred CCCCceEEEEEEccccCCCc------eeEEEEEeeecccccCCCcceeEEEEEEEE
Q 008214 339 QSSELIGCAQVRLCELEPGK------VKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (573)
Q Consensus 339 ~~d~~lG~~~i~l~~l~~~~------~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (573)
+++++||++.+++.++..+. ....|++|.+.. ..++..|+|++++.|
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~---~~~~~~G~l~~~~~~ 132 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRS---SKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecC---CCCcceeEEEEEEee
Confidence 89999999999999986543 246899997532 245789999999987
No 55
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.77 E-value=8.2e-18 Score=145.91 Aligned_cols=105 Identities=26% Similarity=0.462 Sum_probs=88.7
Q ss_pred eeEEEEEEEEeecCCCCCCC-CCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeC
Q 008214 447 RGVLSVTVILAENLPASDLM-GKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDH 520 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~~~-~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~ 520 (573)
.+.|.|+|++|+||+..+.. |.+||||++++... ..++||++++++.||+|||+|.|.+... ....|.+.|||.
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~ 93 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHS 93 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeC
Confidence 47899999999999998865 89999999999531 3477999999999999999999998642 356999999999
Q ss_pred CCCCC-ceeEEEEEEcceeeec---CeEeEEEEcC
Q 008214 521 DTFGK-DYMGRCILTLTRVILE---GEYTDCFELD 551 (573)
Q Consensus 521 ~~~~~-d~lG~~~i~l~~l~~~---~~~~~~~~L~ 551 (573)
+..++ ++||.+.|+|+++... .....||+|.
T Consensus 94 ~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 94 RTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred CCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 98765 7999999999998543 3568999984
No 56
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.76 E-value=5.8e-18 Score=147.05 Aligned_cols=110 Identities=32% Similarity=0.518 Sum_probs=98.2
Q ss_pred cCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEEeC
Q 008214 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDD 335 (573)
Q Consensus 258 ~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~d~ 335 (573)
....|.|.|+|++|++|+.++..+.+||||++++.+...+.++|++++++.||+|||+|.|.+... ....|.|+|||+
T Consensus 12 ~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~ 91 (124)
T cd08385 12 DFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDF 91 (124)
T ss_pred eCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeC
Confidence 356789999999999999999889999999999986656678999999999999999999998642 356899999999
Q ss_pred CCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (573)
Q Consensus 336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 367 (573)
+.++++++||++.+++.++..+...+.|++|.
T Consensus 92 d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 92 DRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 99989999999999999998888889999873
No 57
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.76 E-value=1.4e-17 Score=143.58 Aligned_cols=118 Identities=33% Similarity=0.584 Sum_probs=102.1
Q ss_pred eEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCC
Q 008214 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS 341 (573)
Q Consensus 262 G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d 341 (573)
|.|+|+|++|++|+..+..+.+||||++++. +..++|++++++.||.|||+|.|.+.+. .+.+.|+|||++..+++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~ 76 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELV---NARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKP 76 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEEC---CEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCC
Confidence 7899999999999999988999999999986 4568999999999999999999998753 46899999999988899
Q ss_pred CceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEE
Q 008214 342 ELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (573)
Q Consensus 342 ~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (573)
++||++.+++.++..+. ..|+.|.... ...+..|+|.+++.+
T Consensus 77 ~~iG~~~~~l~~~~~~~--~~~~~l~~~~---~~~~~~G~i~l~~~~ 118 (119)
T cd08377 77 EFLGKVAIPLLSIKNGE--RKWYALKDKK---LRTRAKGSILLEMDV 118 (119)
T ss_pred ceeeEEEEEHHHCCCCC--ceEEECcccC---CCCceeeEEEEEEEe
Confidence 99999999999987654 5799986432 245679999999876
No 58
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.76 E-value=8.7e-18 Score=146.17 Aligned_cols=111 Identities=21% Similarity=0.269 Sum_probs=94.4
Q ss_pred ccCcceEEEEEEEEeeeccCCCCC-CCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEE-Eec--CCCcEEEEEE
Q 008214 257 ELKPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI-VED--ESTQHLVVRI 332 (573)
Q Consensus 257 ~~~~~G~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~-v~~--~~~~~l~i~v 332 (573)
+....+.|+|+|++|++|+..+.. +.+||||++++.+...+++||++++++.||+|||+|.|. +.. .....|.++|
T Consensus 11 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V 90 (128)
T cd08388 11 YNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAV 90 (128)
T ss_pred EECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEE
Confidence 345678999999999999998876 889999999998666667899999999999999999993 432 2345799999
Q ss_pred EeCCCCCCCCceEEEEEEccccCCC--ceeEEEEEee
Q 008214 333 YDDEGIQSSELIGCAQVRLCELEPG--KVKDVWLKLV 367 (573)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~--~~~~~w~~L~ 367 (573)
||++.+++|++||++.++|.++... .....|++++
T Consensus 91 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 91 LSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 9999999999999999999998544 5678899875
No 59
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.76 E-value=5.8e-18 Score=149.94 Aligned_cols=106 Identities=24% Similarity=0.342 Sum_probs=90.1
Q ss_pred EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEEEe---------------cCCC
Q 008214 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVE---------------DEST 325 (573)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~v~---------------~~~~ 325 (573)
.|.|+|++|++|+. ..|.+||||++++.+.. .+.++|++++++.||+|||+|.|.+. +...
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 47899999999997 46899999999997422 25678999999999999999999985 1233
Q ss_pred cEEEEEEEeCCCCCCCCceEEEEEEccccCCC-ceeEEEEEeeecc
Q 008214 326 QHLVVRIYDDEGIQSSELIGCAQVRLCELEPG-KVKDVWLKLVKDL 370 (573)
Q Consensus 326 ~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~-~~~~~w~~L~~~~ 370 (573)
..|.|.|||++..++|++||++.+++..+..+ .....|++|.+..
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~ 124 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence 57999999999888999999999999999876 5678999997654
No 60
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.76 E-value=2.2e-17 Score=143.57 Aligned_cols=123 Identities=17% Similarity=0.282 Sum_probs=103.7
Q ss_pred cceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCC
Q 008214 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339 (573)
Q Consensus 260 ~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~ 339 (573)
|.++|+|+|++|++|...+..|.+||||+++++ ++.++|++++++.||+|||.|.|.+.+. ...|.|+|||++..
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~- 75 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCE---GESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL- 75 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEEC---CEEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-
Confidence 468999999999999999988999999999987 5678999999999999999999988764 56899999999876
Q ss_pred CCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEee
Q 008214 340 SSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (573)
Q Consensus 340 ~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p 390 (573)
.|++||++.+++.++.. ....|++|.+... ...++..|+|.+++.+.+
T Consensus 76 ~d~~lG~~~~~l~~~~~--~~~~~~~l~~~~~-~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 CDEFLGQATLSADPNDS--QTLRTLPLRKRGR-DAAGEVPGTISVKVTSSD 123 (126)
T ss_pred CCCceEEEEEecccCCC--cCceEEEcccCCC-CCCCCCCCEEEEEEEEcc
Confidence 58999999999987643 3456777764332 356789999999998754
No 61
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.75 E-value=5.3e-18 Score=145.73 Aligned_cols=110 Identities=20% Similarity=0.313 Sum_probs=95.4
Q ss_pred ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC---CeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEE
Q 008214 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVR 331 (573)
Q Consensus 257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~ 331 (573)
+.+..|.|.|+|++|+||+..+..+.+||||++++.+.++ ..++|++++++.||+|||+|.|.+... ....|.+.
T Consensus 9 Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~ 88 (124)
T cd08680 9 YDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVD 88 (124)
T ss_pred ECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEE
Confidence 4567899999999999999988888999999999987663 478999999999999999999998643 56799999
Q ss_pred EEeCCCCCCCCceEEEEEEccccCCC-ceeEEEEEe
Q 008214 332 IYDDEGIQSSELIGCAQVRLCELEPG-KVKDVWLKL 366 (573)
Q Consensus 332 v~d~~~~~~d~~lG~~~i~l~~l~~~-~~~~~w~~L 366 (573)
|||++..+++++||.+.++|+++... .....|++|
T Consensus 89 V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 89 VCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 99999999999999999999999544 446778764
No 62
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.75 E-value=2.5e-17 Score=143.02 Aligned_cols=115 Identities=18% Similarity=0.355 Sum_probs=97.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-c
Q 008214 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-D 526 (573)
Q Consensus 448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d 526 (573)
..|+|+|++|+||+.. +.+||||++.+++ .+..||++ +++.||.|||+|.|.+..+....+.|.|||++..++ +
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~-~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~ 78 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNE-VKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS 78 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEECC-EeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence 5699999999999874 4689999999975 34568887 468999999999998765544689999999988765 6
Q ss_pred eeEEEEEEcceeeecCeEeEEEEcCCC------CCeEEEEEEEEEec
Q 008214 527 YMGRCILTLTRVILEGEYTDCFELDGT------KSGKLKLHLKWMPQ 567 (573)
Q Consensus 527 ~lG~~~i~l~~l~~~~~~~~~~~L~~~------~~G~i~l~l~~~p~ 567 (573)
+||.+.++|+++..++..+.||+|.+. ..|+|+++++|.+.
T Consensus 79 ~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 79 EIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred eEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 999999999999887778999999653 35999999999875
No 63
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.75 E-value=1.8e-17 Score=143.87 Aligned_cols=105 Identities=33% Similarity=0.525 Sum_probs=91.7
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC-cceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCCCC
Q 008214 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF 523 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~~~ 523 (573)
.+.|.|+|++|+||+..+..+.+||||++++.. ...+++|++++++.||.|||+|.|.+... ....|.|+|||++..
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~ 94 (124)
T cd08385 15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRF 94 (124)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCC
Confidence 478999999999999998889999999999853 23578999999999999999999998642 356899999999887
Q ss_pred CC-ceeEEEEEEcceeeecCeEeEEEEcC
Q 008214 524 GK-DYMGRCILTLTRVILEGEYTDCFELD 551 (573)
Q Consensus 524 ~~-d~lG~~~i~l~~l~~~~~~~~~~~L~ 551 (573)
++ ++||++.++++++..+...++|+.|+
T Consensus 95 ~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 95 SKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 65 69999999999998777789999986
No 64
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.75 E-value=1.4e-17 Score=143.29 Aligned_cols=113 Identities=21% Similarity=0.340 Sum_probs=97.5
Q ss_pred EEEEEEEeecCCCCC-CCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-ce
Q 008214 450 LSVTVILAENLPASD-LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DY 527 (573)
Q Consensus 450 L~V~v~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d~ 527 (573)
|.|+|.+|+||+..+ ..|.+||||.+.+++ ...++|+++++|.||.|||+|.|.+.+. ...|.|.|||++..+. ++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~-~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~~ 79 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQ-EEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDSV 79 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECC-ccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCce
Confidence 678999999999874 457899999999964 3568999999999999999999999853 4689999999998865 69
Q ss_pred eEEEEEEcceeeecCeEeEEEEcCCC-----CCeEEEEEEEE
Q 008214 528 MGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKW 564 (573)
Q Consensus 528 lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~i~l~l~~ 564 (573)
||.+.++++++..++..+.||+|+.. ..|+|+++++|
T Consensus 80 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 80 IGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 99999999999877777999999753 37999999874
No 65
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.75 E-value=4.6e-18 Score=144.38 Aligned_cols=102 Identities=26% Similarity=0.523 Sum_probs=89.0
Q ss_pred eEEEEEEEEeeeccCCCCC-CCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecC---CCcEEEEEEEeCCC
Q 008214 262 GTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRIYDDEG 337 (573)
Q Consensus 262 G~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~---~~~~l~i~v~d~~~ 337 (573)
|+|+|+|++|++|+..+.. +.+||||++++.+.+...++|+++++++||+|||+|.|.+... ..+.|.++|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 7899999999999999987 8999999999975445678999999999999999999987654 35689999999999
Q ss_pred CCCCCceEEEEEEccccCCCceeEEEEEe
Q 008214 338 IQSSELIGCAQVRLCELEPGKVKDVWLKL 366 (573)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 366 (573)
.++|++||++.+++.++.. ...|+++
T Consensus 81 ~~~dd~lG~~~i~l~~l~~---~~~~~~~ 106 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE---DRNWMGR 106 (111)
T ss_pred CCCCCcceEEEEEHHHHhc---CCCCCcc
Confidence 9899999999999999973 3466665
No 66
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.75 E-value=1.3e-17 Score=142.06 Aligned_cols=104 Identities=21% Similarity=0.284 Sum_probs=88.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEc-----CcceeEeecccCCCCCCeeeeEEEEEecc---CCCCEEEEEEEeC
Q 008214 449 VLSVTVILAENLPASDLMGKADPYVVLTMK-----KSETRNKTRVVNDCLNPIWNQTFDFVVED---GLHDMLIAEVWDH 520 (573)
Q Consensus 449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~-----~~~~~~kT~~~~~t~nP~wne~f~f~v~~---~~~~~L~i~V~d~ 520 (573)
.|+|+|++|++|+..+ .|.+||||++++. ...++++|+++++|.||+|||+|+|.+.+ +....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999887 4899999999983 22246789999999999999999999973 3445799999999
Q ss_pred CCCCC-ceeEEEEEEcceeeecCeEeEEEEcCCC
Q 008214 521 DTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 553 (573)
Q Consensus 521 ~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~ 553 (573)
+..++ ++||++.++++++..++....|++|...
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 87664 6999999999999988888999999653
No 67
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.75 E-value=1.3e-17 Score=142.93 Aligned_cols=103 Identities=23% Similarity=0.466 Sum_probs=87.9
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEeccC-CCCEEEEEEEeCCC
Q 008214 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDT 522 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~L~i~V~d~~~ 522 (573)
.+.|.|+|++|+||+..+ .|.+||||++++... ..++||++++++.||.|||+|.|.+... ....|.|+|||++.
T Consensus 11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~ 89 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS 89 (119)
T ss_pred CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence 378999999999999988 789999999999632 2467999999999999999999998642 23579999999887
Q ss_pred CC--CceeEEEEEEcceeeecCeEeEEEEc
Q 008214 523 FG--KDYMGRCILTLTRVILEGEYTDCFEL 550 (573)
Q Consensus 523 ~~--~d~lG~~~i~l~~l~~~~~~~~~~~L 550 (573)
.+ +++||.+.|+|.++..+....+||.|
T Consensus 90 ~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 90 KSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 64 36999999999999876667999986
No 68
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.75 E-value=1.3e-17 Score=144.67 Aligned_cols=110 Identities=20% Similarity=0.406 Sum_probs=94.2
Q ss_pred ccCcceEEEEEEEEeeeccCCCCC-CCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEE
Q 008214 257 ELKPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVR 331 (573)
Q Consensus 257 ~~~~~G~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~ 331 (573)
+....+.|.|+|++|+||+.++.. |.+||||++++.+.. ..++||++++++.||+|||+|.|.+... ....|.+.
T Consensus 10 Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~ 89 (128)
T cd08392 10 YNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVS 89 (128)
T ss_pred EeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEE
Confidence 345679999999999999998875 899999999998654 3367999999999999999999998643 35689999
Q ss_pred EEeCCCCCCCCceEEEEEEccccCCC---ceeEEEEEe
Q 008214 332 IYDDEGIQSSELIGCAQVRLCELEPG---KVKDVWLKL 366 (573)
Q Consensus 332 v~d~~~~~~d~~lG~~~i~l~~l~~~---~~~~~w~~L 366 (573)
|||++.++++++||++.|+|.++... .....|++|
T Consensus 90 V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 90 VWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 99999989999999999999998443 466789987
No 69
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.74 E-value=4.2e-17 Score=143.55 Aligned_cols=119 Identities=22% Similarity=0.401 Sum_probs=100.1
Q ss_pred EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecC---------CCcEEEEEEE
Q 008214 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---------STQHLVVRIY 333 (573)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~---------~~~~l~i~v~ 333 (573)
.|+|+|++|++|+.+|..|.+||||+++++ +++++|++++++.||.|||+|.|.+... ....|.++||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFL---NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEEC---CeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 589999999999999999999999999997 5688999999999999999999975432 1257999999
Q ss_pred eCCCCCCCCceEEEEE-EccccC---CCceeEEEEEeeecccccCCCcceeEEEEEEEEee
Q 008214 334 DDEGIQSSELIGCAQV-RLCELE---PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (573)
Q Consensus 334 d~~~~~~d~~lG~~~i-~l~~l~---~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p 390 (573)
|++..++|++||++.+ ++..+. .+.....|++|.+ .+...|+|.+++++.+
T Consensus 79 d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~------~~~~~Geil~~~~~~~ 133 (135)
T cd04017 79 DQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK------GGQSAGELLAAFELIE 133 (135)
T ss_pred eCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec------CCCchhheeEEeEEEE
Confidence 9999889999999986 444443 3466789999953 3468999999999976
No 70
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.74 E-value=3.8e-17 Score=142.61 Aligned_cols=105 Identities=34% Similarity=0.507 Sum_probs=90.9
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEecc--CCCCEEEEEEEeCC
Q 008214 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD 521 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~V~d~~ 521 (573)
.+.|+|+|++|+||+..+..+.+||||++++... ..++||++++++.||+|||+|.|.+.. .....|.|.|||++
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~ 94 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSK 94 (127)
T ss_pred CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECC
Confidence 4789999999999999998899999999999532 357899999999999999999999863 24578999999998
Q ss_pred CC--C-CceeEEEEEEcceeeecCeEeEEEEcC
Q 008214 522 TF--G-KDYMGRCILTLTRVILEGEYTDCFELD 551 (573)
Q Consensus 522 ~~--~-~d~lG~~~i~l~~l~~~~~~~~~~~L~ 551 (573)
.. + +++||.+.+++.++..++...+||+|.
T Consensus 95 ~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 95 SFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred cccCCCCceEEEEEEecccccccCCccceEECc
Confidence 74 3 479999999999998777779999984
No 71
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.74 E-value=1.8e-17 Score=142.46 Aligned_cols=105 Identities=17% Similarity=0.235 Sum_probs=89.4
Q ss_pred eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc----ceeEeecccCCCCCCeeeeEEEEEecc--CCCCEEEEEEEe
Q 008214 446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS----ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWD 519 (573)
Q Consensus 446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~----~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~V~d 519 (573)
..+.|.|+|++|+||+..+..+.+||||++++-.. ..++||++++++.||+|||+|+|.+.. ..+..|.++|||
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~ 91 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCS 91 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEe
Confidence 35789999999999999888889999999998422 247899999999999999999999863 356799999999
Q ss_pred CCCCCC-ceeEEEEEEcceeeec-CeEeEEEEc
Q 008214 520 HDTFGK-DYMGRCILTLTRVILE-GEYTDCFEL 550 (573)
Q Consensus 520 ~~~~~~-d~lG~~~i~l~~l~~~-~~~~~~~~L 550 (573)
.+..++ ++||.+.|+|+++... +....||.|
T Consensus 92 ~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 92 VGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 988765 6999999999999554 346889976
No 72
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.74 E-value=2.3e-17 Score=143.55 Aligned_cols=111 Identities=25% Similarity=0.410 Sum_probs=97.5
Q ss_pred ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEec---CCCcEEEEEEE
Q 008214 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIY 333 (573)
Q Consensus 257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~---~~~~~l~i~v~ 333 (573)
+....+.|.|+|++|++|+..+..+.+||||++++.+.+.+..+|++++++.||+|||+|.|.+.. .....|.++||
T Consensus 11 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~ 90 (125)
T cd08386 11 YDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVL 90 (125)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEE
Confidence 345678999999999999999988999999999997555677899999999999999999997532 23467999999
Q ss_pred eCCCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (573)
Q Consensus 334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 367 (573)
|++..+++++||++.+++.++..+.....|+.|+
T Consensus 91 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 91 DYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred eCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 9999889999999999999998888889999985
No 73
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.74 E-value=1.6e-17 Score=143.75 Aligned_cols=110 Identities=30% Similarity=0.404 Sum_probs=97.3
Q ss_pred ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEE-Eec--CCCcEEEEEEE
Q 008214 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI-VED--ESTQHLVVRIY 333 (573)
Q Consensus 257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~-v~~--~~~~~l~i~v~ 333 (573)
+....+.|.|+|++|+||+..+..|.+||||++.+.+...++++|+++++ .||+|||+|.|. +.. .....|.++||
T Consensus 11 Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~ 89 (124)
T cd08389 11 YDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLY 89 (124)
T ss_pred ECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEE
Confidence 44567899999999999999998889999999998776677889999887 999999999998 542 24668999999
Q ss_pred eCCCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (573)
Q Consensus 334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 367 (573)
|++.++++++||++.++|+++..+.....|++|+
T Consensus 90 ~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 90 GVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred ECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 9999999999999999999998888899999985
No 74
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.74 E-value=1.7e-17 Score=139.46 Aligned_cols=99 Identities=31% Similarity=0.410 Sum_probs=89.4
Q ss_pred EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 008214 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (573)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~ 342 (573)
.|.|+|++|++|+..+..+.+||||+++++ ++.++|++++++.||+|||+|.|.+.++..+.|.|+|||++. ++
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~ 74 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVG---KTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GK 74 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEEC---CEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CC
Confidence 378999999999998888999999999997 578999999999999999999999998777899999999885 88
Q ss_pred ceEEEEEEccccCCC--ceeEEEEEee
Q 008214 343 LIGCAQVRLCELEPG--KVKDVWLKLV 367 (573)
Q Consensus 343 ~lG~~~i~l~~l~~~--~~~~~w~~L~ 367 (573)
+||++.++|.++... ...+.|++|.
T Consensus 75 ~iG~~~i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 75 SLGSLTLPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred ccEEEEEEHHHhhccccceeeeeEecC
Confidence 999999999998654 3678999985
No 75
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.74 E-value=3.9e-17 Score=140.90 Aligned_cols=118 Identities=26% Similarity=0.524 Sum_probs=99.6
Q ss_pred EEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCCc
Q 008214 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (573)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~ 343 (573)
|.|+|++|++|++++..|.+||||+++++ +...++|++++++.||+|||.|.|.+.. ..+.|.|+|||++..++|++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~~l~v~v~d~~~~~~d~~ 78 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD--NEVIIRTATVWKTLNPFWGEEYTVHLPP-GFHTVSFYVLDEDTLSRDDV 78 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEEC--CEeeeeeeeEcCCCCCcccceEEEeeCC-CCCEEEEEEEECCCCCCCCE
Confidence 78999999999999999999999999986 2335799999999999999999999864 34689999999999999999
Q ss_pred eEEEEEEccccCCC-ceeEEEEEeeecccccCCCcceeEEEEEEE
Q 008214 344 IGCAQVRLCELEPG-KVKDVWLKLVKDLDVQRDTKYRGQVHLELL 387 (573)
Q Consensus 344 lG~~~i~l~~l~~~-~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~ 387 (573)
||++.+++..+..+ ...+.|++|.+. .......|+|++.+.
T Consensus 79 iG~~~~~~~~~~~~~~~~~~W~~L~~~---~~~~~~~G~i~l~~~ 120 (121)
T cd04054 79 IGKVSLTREVISAHPRGIDGWMNLTEV---DPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEEcHHHhccCCCCCCcEEECeee---CCCCccccEEEEEEE
Confidence 99999999888653 346899999653 224457899988764
No 76
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.74 E-value=4.4e-17 Score=143.04 Aligned_cols=115 Identities=24% Similarity=0.458 Sum_probs=100.1
Q ss_pred ceEEEEEEEEeeeccCCCCC----------CCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEE
Q 008214 261 VGTLEVKLVQAKGLTNKDLI----------GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVV 330 (573)
Q Consensus 261 ~G~L~V~v~~a~~L~~~d~~----------g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i 330 (573)
.|.|+|+|++|++|...+.. +.+||||+++++ +.+..+|++++++.||.|||+|.|.+. ....|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~ 78 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD--DTHIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLEL 78 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC--CEEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEEE
Confidence 58999999999999988752 578999999997 234578999999999999999999997 3468999
Q ss_pred EEEeCCCCCCCCceEEEEEEccccCC--CceeEEEEEeeecccccCCCcceeEEEEEEEEe
Q 008214 331 RIYDDEGIQSSELIGCAQVRLCELEP--GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (573)
Q Consensus 331 ~v~d~~~~~~d~~lG~~~i~l~~l~~--~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (573)
.|||++..++++++|.+.++|.++.. +...+.|++|. ..|+|++.+.|.
T Consensus 79 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~----------~~G~l~l~~~~~ 129 (132)
T cd04014 79 TVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE----------PQGKLHVKIELK 129 (132)
T ss_pred EEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc----------CCcEEEEEEEEe
Confidence 99999988889999999999999977 56689999983 459999999986
No 77
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.74 E-value=4e-17 Score=141.25 Aligned_cols=118 Identities=26% Similarity=0.533 Sum_probs=98.4
Q ss_pred EEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCC--C
Q 008214 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS--S 341 (573)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~--d 341 (573)
|+|+|++|++|+..+..+.+||||++++. +.+.++|++++++.||.|||+|.|.+.. .+.|.|+|||++..++ |
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d 77 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVD--GGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQ 77 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEEC--CccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCC
Confidence 78999999999999988999999999995 2567899999999999999999999974 6799999999998765 5
Q ss_pred CceEEEEEEccccCCCc-eeEEEEEeeecccccCCCcceeEEEEEE
Q 008214 342 ELIGCAQVRLCELEPGK-VKDVWLKLVKDLDVQRDTKYRGQVHLEL 386 (573)
Q Consensus 342 ~~lG~~~i~l~~l~~~~-~~~~w~~L~~~~~~~~~~~~~G~i~l~l 386 (573)
++||++.+++.++.... ....|++|.+... ...+...|+|.+++
T Consensus 78 ~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~-~~~~~~~G~v~~~~ 122 (123)
T cd08382 78 GFLGCVRIRANAVLPLKDTGYQRLDLRKLKK-SDNLSVRGKIVVSL 122 (123)
T ss_pred ceEeEEEEEHHHccccCCCccceeEeecCCC-CCCceEeeEEEEEe
Confidence 89999999999986543 3477999854332 23456688888765
No 78
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.74 E-value=1.5e-17 Score=142.44 Aligned_cols=106 Identities=25% Similarity=0.471 Sum_probs=90.8
Q ss_pred cceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC--CeEEeeeeCCCCCceeccEEEEEEecC-CCcEEEEEEEeCC
Q 008214 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDE 336 (573)
Q Consensus 260 ~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~w~e~f~f~v~~~-~~~~l~i~v~d~~ 336 (573)
..|.|.|+|++|+||+.++ .|.+||||++++.+... .++||++++++.||+|||+|.|.+... ....|.|.|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 4689999999999999988 78999999999986443 356899999999999999999998643 2347889999998
Q ss_pred CCC-CCCceEEEEEEccccCCCceeEEEEEe
Q 008214 337 GIQ-SSELIGCAQVRLCELEPGKVKDVWLKL 366 (573)
Q Consensus 337 ~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L 366 (573)
... ++++||++.+++.++..+.....|+.|
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 765 478999999999999877778899875
No 79
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.74 E-value=3e-17 Score=142.28 Aligned_cols=112 Identities=29% Similarity=0.525 Sum_probs=98.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-ce
Q 008214 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DY 527 (573)
Q Consensus 449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d~ 527 (573)
.|+|+|++|++|+..+..+.+||||++++++ .+++|++++++.||.|||+|.|.+.......|.|+|||++..++ ++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~--~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~ 78 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNG--QTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDF 78 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECC--EEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcE
Confidence 4899999999999998888999999999975 67899999999999999999999987667789999999998765 79
Q ss_pred eEEEEEEcceeeecCeEeEEEEcCC---------CCCeEEEEEE
Q 008214 528 MGRCILTLTRVILEGEYTDCFELDG---------TKSGKLKLHL 562 (573)
Q Consensus 528 lG~~~i~l~~l~~~~~~~~~~~L~~---------~~~G~i~l~l 562 (573)
||++.+++.++...+....||.|.. ...|.|++.+
T Consensus 79 iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 79 LGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred eEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 9999999999987666789999964 2368888875
No 80
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.74 E-value=4.1e-17 Score=141.96 Aligned_cols=104 Identities=30% Similarity=0.546 Sum_probs=87.6
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC---cceeEeecccCCCCCCeeeeEEEEEeccC---CCCEEEEEEEeC
Q 008214 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG---LHDMLIAEVWDH 520 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~---~~~~L~i~V~d~ 520 (573)
.+.|.|+|++|++|+..+..+.+||||++++.. ...++||++++++.||+|||+|.|.+... ....|.|+|||+
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~ 94 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDY 94 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeC
Confidence 478999999999999998888999999999964 23577999999999999999999986432 457899999999
Q ss_pred CCCCC-ceeEEEEEEcceeeecCeEeEEEEcC
Q 008214 521 DTFGK-DYMGRCILTLTRVILEGEYTDCFELD 551 (573)
Q Consensus 521 ~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~ 551 (573)
+..+. ++||++.++|++.. .....+||+|+
T Consensus 95 ~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~ 125 (125)
T cd04031 95 DRDGENDFLGEVVIDLADAL-LDDEPHWYPLQ 125 (125)
T ss_pred CCCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence 98765 69999999999833 33347899985
No 81
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.73 E-value=6.7e-17 Score=140.90 Aligned_cols=116 Identities=31% Similarity=0.468 Sum_probs=100.8
Q ss_pred EEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEEeCCCCCCCCceE
Q 008214 268 LVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQSSELIG 345 (573)
Q Consensus 268 v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~d~~~~~~d~~lG 345 (573)
|++|++|+. ..|.+||||++++. +..++|++++++.||+|||+|.|.+... ..+.|.|+|||++..++|++||
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~---~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG 76 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFR---GVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIG 76 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEEC---CEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEE
Confidence 688999997 67899999999996 5678999999999999999999999754 4679999999999988999999
Q ss_pred EEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEeecC
Q 008214 346 CAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFG 392 (573)
Q Consensus 346 ~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p~~ 392 (573)
++.++++++..+.....|++|.... .....|+|++++.|.|..
T Consensus 77 ~~~~~l~~l~~~~~~~~~~~L~~~~----~~~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 77 SATVSLQDLVSEGLLEVTEPLLDSN----GRPTGATISLEVSYQPPD 119 (127)
T ss_pred EEEEEhhHcccCCceEEEEeCcCCC----CCcccEEEEEEEEEeCCC
Confidence 9999999999888889999996432 334579999999998743
No 82
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.73 E-value=9.8e-17 Score=139.45 Aligned_cols=118 Identities=21% Similarity=0.347 Sum_probs=101.5
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCCc
Q 008214 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD 526 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d 526 (573)
.++|+|+|++|++|+..+..|.+||||++.+++ .+++|++++++.||.|||.|.|.+.+. ...|.|+|||++..+++
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~--~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~~d~ 78 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG--ESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLLCDE 78 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECC--EEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence 368999999999999988889999999999976 678999999999999999999988764 67899999999987778
Q ss_pred eeEEEEEEcceeeecCeEeEEEEcC-------CCCCeEEEEEEEEEecCC
Q 008214 527 YMGRCILTLTRVILEGEYTDCFELD-------GTKSGKLKLHLKWMPQPI 569 (573)
Q Consensus 527 ~lG~~~i~l~~l~~~~~~~~~~~L~-------~~~~G~i~l~l~~~p~~~ 569 (573)
+||.+.+++.++. ....++|+|. +...|+|.+++...+.++
T Consensus 79 ~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~~~ 126 (126)
T cd04046 79 FLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSDDLT 126 (126)
T ss_pred ceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEccccC
Confidence 9999999998753 3446788883 235899999999887654
No 83
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.73 E-value=6.2e-17 Score=140.99 Aligned_cols=117 Identities=26% Similarity=0.461 Sum_probs=100.1
Q ss_pred EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 008214 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (573)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~ 342 (573)
.|+|+|++|++|+..+..+.+||||++++.....+.++|++++++.||.|||+|.|.+.....+.|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 57899999999999998899999999997643345689999999999999999999998765678999999999888899
Q ss_pred ceEEEEEEccccCC---CceeEEEEEeeecccccCCCcceeEEEEEEEEe
Q 008214 343 LIGCAQVRLCELEP---GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (573)
Q Consensus 343 ~lG~~~i~l~~l~~---~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (573)
+||++.++|.++.. +...+.|++|. ..|++++.+.+.
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~----------~~g~i~l~~~~~ 121 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLD----------TQGRLLLRVSME 121 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcC----------CCCeEEEEEEEe
Confidence 99999999987632 44678999984 258999998885
No 84
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.73 E-value=8.9e-17 Score=139.81 Aligned_cols=105 Identities=31% Similarity=0.482 Sum_probs=87.7
Q ss_pred eeEEEEEEEEeecCCCCCCC-CCCCcEEEEEEcC-cceeEeecccCCCCCCeeeeEEEEE-ec--cCCCCEEEEEEEeCC
Q 008214 447 RGVLSVTVILAENLPASDLM-GKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFV-VE--DGLHDMLIAEVWDHD 521 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~~~-~~~dpyv~v~l~~-~~~~~kT~~~~~t~nP~wne~f~f~-v~--~~~~~~L~i~V~d~~ 521 (573)
.+.|+|+|++|+||+..+.. +.+||||++++.. ...+.||++++++.||.|||+|.|. +. +.....|.++|||++
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d 94 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFD 94 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcC
Confidence 47899999999999998875 8899999999853 2456799999999999999999993 43 223457999999998
Q ss_pred CCCC-ceeEEEEEEcceeeec--CeEeEEEEcC
Q 008214 522 TFGK-DYMGRCILTLTRVILE--GEYTDCFELD 551 (573)
Q Consensus 522 ~~~~-d~lG~~~i~l~~l~~~--~~~~~~~~L~ 551 (573)
..++ ++||++.++|+++... ++...|.+|+
T Consensus 95 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 95 RYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred CCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 8765 6999999999998655 5678898875
No 85
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.73 E-value=2.8e-17 Score=143.40 Aligned_cols=109 Identities=26% Similarity=0.437 Sum_probs=95.6
Q ss_pred cCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEE
Q 008214 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY 333 (573)
Q Consensus 258 ~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~ 333 (573)
....+.|+|+|++|+||+..+..+.+||||++++.+.+ ..+++|++++++.||+|||+|.|.+... ....|.+.||
T Consensus 12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~ 91 (127)
T cd04030 12 SSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVK 91 (127)
T ss_pred eCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEE
Confidence 35679999999999999999988999999999997543 4578999999999999999999998643 3568999999
Q ss_pred eCCCC--CCCCceEEEEEEccccCCCceeEEEEEe
Q 008214 334 DDEGI--QSSELIGCAQVRLCELEPGKVKDVWLKL 366 (573)
Q Consensus 334 d~~~~--~~d~~lG~~~i~l~~l~~~~~~~~w~~L 366 (573)
|++.. +++++||++.++|.++..+.....|++|
T Consensus 92 ~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 92 NSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred ECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 99875 6899999999999999887888899987
No 86
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.73 E-value=9.6e-17 Score=140.89 Aligned_cols=116 Identities=23% Similarity=0.453 Sum_probs=100.1
Q ss_pred eeEEEEEEEEeecCCCCCCC----------CCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEE
Q 008214 447 RGVLSVTVILAENLPASDLM----------GKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAE 516 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~~~----------~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~ 516 (573)
.|.|+|+|++|++|...+.. +.+||||++.+++ ....+|+++++|.||.|||+|+|.+. ....|.|.
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~-~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~~ 79 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDD-THIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLELT 79 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECC-EEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEEEE
Confidence 58999999999999987752 5789999999975 34578999999999999999999997 35789999
Q ss_pred EEeCCCCCC-ceeEEEEEEcceeee--cCeEeEEEEcCCCCCeEEEEEEEEEec
Q 008214 517 VWDHDTFGK-DYMGRCILTLTRVIL--EGEYTDCFELDGTKSGKLKLHLKWMPQ 567 (573)
Q Consensus 517 V~d~~~~~~-d~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~G~i~l~l~~~p~ 567 (573)
|||++..+. ++||++.++|+++.. ....+.||+|+ ++|+|+++++|...
T Consensus 80 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l~l~~~~~~~ 131 (132)
T cd04014 80 VFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKLHVKIELKGS 131 (132)
T ss_pred EEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEEEEEEEEecC
Confidence 999987755 699999999999987 45568999998 47999999999753
No 87
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.73 E-value=2.7e-17 Score=138.26 Aligned_cols=94 Identities=15% Similarity=0.294 Sum_probs=82.1
Q ss_pred eEEEEEEEEeeeccCCCCC----CCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCC-CcEEEEEEEeCC
Q 008214 262 GTLEVKLVQAKGLTNKDLI----GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES-TQHLVVRIYDDE 336 (573)
Q Consensus 262 G~L~V~v~~a~~L~~~d~~----g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~-~~~l~i~v~d~~ 336 (573)
|+|.|+|++|++|+..+.. +.+||||+++++ ++.+||++++++.||+|||.|.|.+.+.. ...|.|+|||++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~---~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG---RRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEEC---CEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence 7899999999999987632 358999999996 66789999999999999999999987543 357999999999
Q ss_pred CCCCCCceEEEEEEccccCCCc
Q 008214 337 GIQSSELIGCAQVRLCELEPGK 358 (573)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~~~ 358 (573)
..++|++||++.++|.+|..+.
T Consensus 78 ~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 78 KFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCCCcceEEEEEEHHHHHhhC
Confidence 9999999999999999986543
No 88
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.72 E-value=1.7e-17 Score=144.28 Aligned_cols=93 Identities=40% Similarity=0.699 Sum_probs=85.6
Q ss_pred eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC
Q 008214 446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK 525 (573)
Q Consensus 446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~ 525 (573)
.-|.|+|.|.+|.||...|..+++||||.+++++ ++.||+++++++||+|||.|+|.+.++ +..|.++|||+|.++.
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~--q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs~ 80 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGN--QKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFSS 80 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECC--eeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCCc
Confidence 3589999999999999999889999999999987 888999999999999999999999986 6789999999999976
Q ss_pred -ceeEEEEEEcceeeec
Q 008214 526 -DYMGRCILTLTRVILE 541 (573)
Q Consensus 526 -d~lG~~~i~l~~l~~~ 541 (573)
|+||.++|+|..+...
T Consensus 81 dD~mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 81 DDFMGEATIPLKPLLEA 97 (168)
T ss_pred ccccceeeeccHHHHHH
Confidence 7999999999887643
No 89
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.72 E-value=6.8e-17 Score=146.11 Aligned_cols=109 Identities=33% Similarity=0.474 Sum_probs=93.0
Q ss_pred ceeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC---cceeEeecccCCCCCCeeeeEEEEEec---cCCCCEEEEEEE
Q 008214 445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVW 518 (573)
Q Consensus 445 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~ 518 (573)
...|.|+|+|++|+||+..+..+.+||||++++.. ...++||++++++.||.|||+|.|.+. +..+..|.|+||
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~ 103 (162)
T cd04020 24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW 103 (162)
T ss_pred CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence 35689999999999999999889999999999842 235789999999999999999999853 223458999999
Q ss_pred eCCCCCC-ceeEEEEEEcceeeecCeEeEEEEcCCC
Q 008214 519 DHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 553 (573)
Q Consensus 519 d~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~ 553 (573)
|++..++ ++||++.+++.++...+....||.+.+.
T Consensus 104 d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~ 139 (162)
T cd04020 104 DHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGE 139 (162)
T ss_pred eCCCCCCCceEEEEEEeCCccccCCCccccccCChH
Confidence 9998874 7999999999999877777889988653
No 90
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.72 E-value=3.8e-17 Score=141.77 Aligned_cols=109 Identities=20% Similarity=0.445 Sum_probs=94.8
Q ss_pred cCcceEEEEEEEEeeeccCCC-CCCCCCcEEEEEEecCCC--CeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEE
Q 008214 258 LKPVGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 332 (573)
Q Consensus 258 ~~~~G~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v 332 (573)
....|.|.|+|++|+||+..+ ..+.+||||++++.+... .+++|++++++.||+|||+|.|.+... ....|.|+|
T Consensus 10 ~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v 89 (123)
T cd08521 10 NYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSV 89 (123)
T ss_pred eCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 356799999999999999988 678999999999975432 468999999999999999999998643 356899999
Q ss_pred EeCCCCCCCCceEEEEEEccccCCCceeEEEEEe
Q 008214 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366 (573)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 366 (573)
||++..+++++||++.++|.++..+.....|++|
T Consensus 90 ~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 90 WHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 9999988999999999999999777778899975
No 91
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.72 E-value=8.4e-17 Score=139.82 Aligned_cols=118 Identities=31% Similarity=0.541 Sum_probs=99.2
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-
Q 008214 448 GVLSVTVILAENLPASD-LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK- 525 (573)
Q Consensus 448 ~~L~V~v~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~- 525 (573)
|.|+|+|++|++|+..+ ..+.+||||++++++....++|++++++.||.|||.|.|.+. ...+.|.|+|||++..+.
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~~d 80 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKRKD 80 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCCCC
Confidence 78999999999999755 446789999999975236789999999999999999999988 457799999999988755
Q ss_pred ceeEEEEEEcceeeecCeEe-EEEEc--CCCCCeEEEEEEEEEe
Q 008214 526 DYMGRCILTLTRVILEGEYT-DCFEL--DGTKSGKLKLHLKWMP 566 (573)
Q Consensus 526 d~lG~~~i~l~~l~~~~~~~-~~~~L--~~~~~G~i~l~l~~~p 566 (573)
++||.+.+++.++..+.... .++.+ .+...|+|+++++|.|
T Consensus 81 ~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 81 KLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP 124 (124)
T ss_pred ceeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence 69999999999998776654 34443 4556899999999986
No 92
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.72 E-value=7.2e-17 Score=140.00 Aligned_cols=104 Identities=26% Similarity=0.534 Sum_probs=89.6
Q ss_pred eeEEEEEEEEeecCCCCC-CCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeC
Q 008214 447 RGVLSVTVILAENLPASD-LMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDH 520 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~-~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~ 520 (573)
.+.|.|+|++|+||+..+ ..+.+||||++++... ..+++|++++++.||+|||+|.|.+... ....|.|+|||+
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~ 92 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHH 92 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeC
Confidence 478999999999999988 6789999999998421 2468999999999999999999998642 356899999999
Q ss_pred CCCCC-ceeEEEEEEcceeeecCeEeEEEEc
Q 008214 521 DTFGK-DYMGRCILTLTRVILEGEYTDCFEL 550 (573)
Q Consensus 521 ~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L 550 (573)
+..++ ++||++.++|.++..+.....||+|
T Consensus 93 ~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 93 DRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 98765 6999999999999777777999987
No 93
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.72 E-value=1e-16 Score=138.74 Aligned_cols=105 Identities=31% Similarity=0.431 Sum_probs=90.3
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEc-CcceeEeecccCCCCCCeeeeEEEEE-ecc--CCCCEEEEEEEeCCC
Q 008214 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMK-KSETRNKTRVVNDCLNPIWNQTFDFV-VED--GLHDMLIAEVWDHDT 522 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~-~~~~~~kT~~~~~t~nP~wne~f~f~-v~~--~~~~~L~i~V~d~~~ 522 (573)
.+.|.|+|++|+||+..+..|..||||++.+. ....++||+++++ .||+|||+|.|. +.. ..+..|.++|||++.
T Consensus 15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~ 93 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVER 93 (124)
T ss_pred CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCC
Confidence 47899999999999999888889999998874 3346789999887 999999999998 542 246789999999998
Q ss_pred CCC-ceeEEEEEEcceeeecCeEeEEEEcCC
Q 008214 523 FGK-DYMGRCILTLTRVILEGEYTDCFELDG 552 (573)
Q Consensus 523 ~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~ 552 (573)
.+. ++||.+.|+|+++..++....||+|++
T Consensus 94 ~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 94 MRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred cccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 765 799999999999987778899999973
No 94
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.72 E-value=7.4e-17 Score=139.91 Aligned_cols=111 Identities=24% Similarity=0.349 Sum_probs=97.5
Q ss_pred ccCcceEEEEEEEEeeeccCCC-CCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEE
Q 008214 257 ELKPVGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY 333 (573)
Q Consensus 257 ~~~~~G~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~ 333 (573)
+....+.|.|+|++|++|+..+ ..+.+||||++++.+.+.+.++|++++++.||+|||+|.|.+... ....|.|+||
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~ 88 (123)
T cd08390 9 YDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVY 88 (123)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEE
Confidence 3456789999999999999988 678899999999976556678999999999999999999998653 2357999999
Q ss_pred eCCCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (573)
Q Consensus 334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 367 (573)
|++..+++++||++.++|.++........|++|.
T Consensus 89 d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 89 DVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred ECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 9998888999999999999998888888999984
No 95
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.72 E-value=6.6e-17 Score=136.91 Aligned_cols=98 Identities=24% Similarity=0.380 Sum_probs=84.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCCce
Q 008214 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDY 527 (573)
Q Consensus 448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d~ 527 (573)
+.|.|+|++|++|+.. +..||||++.+++ ++.+|++.++ .||.|||.|.|.+.+. +..|.|+|||++..++|+
T Consensus 2 ~~L~V~Vv~Ar~L~~~---~~~dPYV~Ik~g~--~k~kT~v~~~-~nP~WnE~F~F~~~~~-~~~L~v~V~dkd~~~DD~ 74 (127)
T cd08394 2 SLLCVLVKKAKLDGAP---DKFNTYVTLKVQN--VKSTTIAVRG-SQPCWEQDFMFEINRL-DLGLVIELWNKGLIWDTL 74 (127)
T ss_pred ceEEEEEEEeeCCCCC---CCCCCeEEEEECC--EEeEeeECCC-CCCceeeEEEEEEcCC-CCEEEEEEEeCCCcCCCc
Confidence 5899999999999764 3459999999976 7889999877 5999999999999875 445999999999887899
Q ss_pred eEEEEEEcceeeecCeE--eEEEEcCC
Q 008214 528 MGRCILTLTRVILEGEY--TDCFELDG 552 (573)
Q Consensus 528 lG~~~i~l~~l~~~~~~--~~~~~L~~ 552 (573)
||++.|+|+++...... .+||+|+.
T Consensus 75 lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 75 VGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred eEEEEEEhHHcccCCCCCCCccEecCh
Confidence 99999999999866444 89999974
No 96
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.72 E-value=9.9e-17 Score=141.16 Aligned_cols=116 Identities=27% Similarity=0.521 Sum_probs=98.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc-----ceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCC
Q 008214 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKS-----ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF 523 (573)
Q Consensus 449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~-----~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~ 523 (573)
.|+|+|++|++|+..+..|.+||||++++.+. ..+++|+++++|.||.|||+|.|.+.. ....|.|+|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNP-REHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcC-CCCEEEEEEEECCCC
Confidence 38899999999999998899999999999653 125789999999999999999999874 356899999999988
Q ss_pred CC-ceeEEEEEEcceeeecCe------EeEEEEcCCC-----CCeEEEEEEEEE
Q 008214 524 GK-DYMGRCILTLTRVILEGE------YTDCFELDGT-----KSGKLKLHLKWM 565 (573)
Q Consensus 524 ~~-d~lG~~~i~l~~l~~~~~------~~~~~~L~~~-----~~G~i~l~l~~~ 565 (573)
++ ++||++.++++++..... ..+||+|++. ..|+|+++++|.
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 65 699999999999886543 3689999742 489999999884
No 97
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.71 E-value=1.2e-16 Score=139.20 Aligned_cols=115 Identities=32% Similarity=0.642 Sum_probs=96.9
Q ss_pred EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCC----
Q 008214 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI---- 338 (573)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~---- 338 (573)
.|+|+|++|++|+..|..|.+||||+++++ ...++|++++++.||.|||+|.|.+..+ ...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG---KTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEEC---CEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence 689999999999999988999999999986 4678999999999999999999988654 46899999999852
Q ss_pred -------CCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEE
Q 008214 339 -------QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLEL 386 (573)
Q Consensus 339 -------~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l 386 (573)
+.+++||++.+++.++.. ....|+.|.+.. .....+|+|.+++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~---~~~~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRT---DKSAVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccC--CCCeEEECccCC---CCCcEeEEEEEEC
Confidence 468999999999998753 357999997543 3456799998863
No 98
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.71 E-value=6.5e-17 Score=140.71 Aligned_cols=107 Identities=24% Similarity=0.446 Sum_probs=90.9
Q ss_pred CcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEEEecC---CCcEEEEEEE
Q 008214 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRIY 333 (573)
Q Consensus 259 ~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~v~~~---~~~~l~i~v~ 333 (573)
...|.|.|+|++|++|+..+..+.+||||++++.+.. ..+++|++++++.||+|||+|.|.+... ....|.|+||
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~ 92 (125)
T cd04031 13 KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVW 92 (125)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence 4579999999999999999888999999999997432 3578899999999999999999986432 4568999999
Q ss_pred eCCCCCCCCceEEEEEEccccCCCceeEEEEEe
Q 008214 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366 (573)
Q Consensus 334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 366 (573)
|++..+++++||++.++|++.. ......|++|
T Consensus 93 d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L 124 (125)
T cd04031 93 DYDRDGENDFLGEVVIDLADAL-LDDEPHWYPL 124 (125)
T ss_pred eCCCCCCCcEeeEEEEeccccc-ccCCcceEEC
Confidence 9999889999999999999832 3335689987
No 99
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.71 E-value=6.2e-17 Score=137.34 Aligned_cols=102 Identities=25% Similarity=0.411 Sum_probs=89.9
Q ss_pred CCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCCceeEEEEEEcceeeec-Ce
Q 008214 465 LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILE-GE 543 (573)
Q Consensus 465 ~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~-~~ 543 (573)
.+|.+||||++++++ ....+|++++++.||.|||.|.|.+.++....|.|+|+|++..++++||.+.++|+++... ..
T Consensus 9 ~~G~~dPYv~v~v~~-~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~ 87 (111)
T cd04052 9 KTGLLSPYAELYLNG-KLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSV 87 (111)
T ss_pred cCCCCCceEEEEECC-EEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhc
Confidence 468899999999975 3467999999999999999999999887778899999999988557999999999998754 44
Q ss_pred EeEEEEcCCCCCeEEEEEEEEEec
Q 008214 544 YTDCFELDGTKSGKLKLHLKWMPQ 567 (573)
Q Consensus 544 ~~~~~~L~~~~~G~i~l~l~~~p~ 567 (573)
..+||+|.+.+.|+|+++++|+|.
T Consensus 88 ~~~w~~L~~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 88 GQQWFPLSGNGQGRIRISALWKPV 111 (111)
T ss_pred cceeEECCCCCCCEEEEEEEEecC
Confidence 589999998889999999999984
No 100
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.71 E-value=2.5e-16 Score=135.78 Aligned_cols=112 Identities=33% Similarity=0.589 Sum_probs=96.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-c
Q 008214 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-D 526 (573)
Q Consensus 448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d 526 (573)
|.|.|+|++|++|+..+..+.+||||++++++ ..++|++++++.||.|||+|.|.+.+. ...|.|+|||++..+. +
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~--~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~~ 77 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN--ARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKPE 77 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC--EeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCCc
Confidence 67999999999999998889999999999975 567999999999999999999998753 5789999999988654 7
Q ss_pred eeEEEEEEcceeeecCeEeEEEEcCCC-----CCeEEEEEEEE
Q 008214 527 YMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKW 564 (573)
Q Consensus 527 ~lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~i~l~l~~ 564 (573)
+||++.+++.++..+ ..+||+|... ..|+|.+++++
T Consensus 78 ~iG~~~~~l~~~~~~--~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 78 FLGKVAIPLLSIKNG--ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eeeEEEEEHHHCCCC--CceEEECcccCCCCceeeEEEEEEEe
Confidence 999999999998643 3689999543 48999999876
No 101
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.71 E-value=1.4e-16 Score=137.50 Aligned_cols=112 Identities=27% Similarity=0.506 Sum_probs=96.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-cee
Q 008214 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYM 528 (573)
Q Consensus 450 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d~l 528 (573)
|+|+|++|++|+..+..|.+||||++.+++ ....||++++++.||.|||.|.|.+... ...|.|+|||++..+. ++|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~-~~~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~i 79 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDN-EVIIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDVI 79 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECC-EeeeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCEE
Confidence 789999999999999999999999999975 3457999999999999999999998743 4789999999998765 799
Q ss_pred EEEEEEcceeeecC-eEeEEEEcCCCC-----CeEEEEEEE
Q 008214 529 GRCILTLTRVILEG-EYTDCFELDGTK-----SGKLKLHLK 563 (573)
Q Consensus 529 G~~~i~l~~l~~~~-~~~~~~~L~~~~-----~G~i~l~l~ 563 (573)
|++.+++.++...+ ..++|++|.+.. .|+|+++++
T Consensus 80 G~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 80 GKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 99999999887543 368999997632 799998764
No 102
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.71 E-value=2.6e-16 Score=137.11 Aligned_cols=116 Identities=33% Similarity=0.510 Sum_probs=99.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc-ceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-c
Q 008214 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-D 526 (573)
Q Consensus 449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~-~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d 526 (573)
.|+|+|.+|++|+..+..+.+||||++.+++. ...+||++++++.||.|||+|.|.+.......|.|+|||++..++ +
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 58999999999999988899999999998643 356899999999999999999999987656789999999998755 6
Q ss_pred eeEEEEEEcceeeec---CeEeEEEEcCCCCCeEEEEEEEEEe
Q 008214 527 YMGRCILTLTRVILE---GEYTDCFELDGTKSGKLKLHLKWMP 566 (573)
Q Consensus 527 ~lG~~~i~l~~l~~~---~~~~~~~~L~~~~~G~i~l~l~~~p 566 (573)
+||++.++|.++... .....|++|.+ +|++++.+.+.-
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~~~ 122 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSMEG 122 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEEee
Confidence 999999999876543 24578999976 699999988753
No 103
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.71 E-value=8.1e-17 Score=143.03 Aligned_cols=103 Identities=39% Similarity=0.712 Sum_probs=90.6
Q ss_pred CcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC--------------------------CCeEEeeeeCCCCCcee
Q 008214 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--------------------------EKTKKSKTINNDLNPIW 312 (573)
Q Consensus 259 ~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--------------------------~~~~~T~~~~~~~nP~w 312 (573)
++.+.|.|+|++|++|..+|..|.+||||++++.+.. .+.++|++++++.||.|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 6889999999999999999999999999999996421 13478999999999999
Q ss_pred ccEEEEEEecCCCcEEEEEEEeCCCCCCCCceEEEEEEccccCCCceeEEEEEe
Q 008214 313 NEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366 (573)
Q Consensus 313 ~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 366 (573)
||+|.|.+.+...+.|.|+|||++ +++||++.++++++.. ...+.|++|
T Consensus 105 nE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 105 NETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred ccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999998766789999999997 8999999999999983 446899875
No 104
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.71 E-value=1.7e-16 Score=138.05 Aligned_cols=105 Identities=32% Similarity=0.482 Sum_probs=90.2
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC-cceeEeecccCCCCCCeeeeEEEEEec---cCCCCEEEEEEEeCCC
Q 008214 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWDHDT 522 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~~kT~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~d~~~ 522 (573)
.+.|.|+|++|+||+..+..+.+||||++++.. ...+.+|++++++.||.|||+|.|.+. ......|.++|||++.
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~ 94 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR 94 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC
Confidence 468999999999999998889999999999842 245789999999999999999999753 2234689999999998
Q ss_pred CCC-ceeEEEEEEcceeeecCeEeEEEEcC
Q 008214 523 FGK-DYMGRCILTLTRVILEGEYTDCFELD 551 (573)
Q Consensus 523 ~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~ 551 (573)
.++ ++||.+.++++++........|+.|.
T Consensus 95 ~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 95 FSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 765 69999999999998777789999986
No 105
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.70 E-value=7.3e-17 Score=136.73 Aligned_cols=101 Identities=27% Similarity=0.472 Sum_probs=89.0
Q ss_pred EEEEEEEeeeccCCCC-CCCCCcEEEEEEecCCCCeEEeeeeCCCCCcee-ccEEEEEEecC--CCcEEEEEEEeCCCCC
Q 008214 264 LEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIW-NEHFEFIVEDE--STQHLVVRIYDDEGIQ 339 (573)
Q Consensus 264 L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w-~e~f~f~v~~~--~~~~l~i~v~d~~~~~ 339 (573)
|.|+|++|++|+.++. .+.+||||+++++ +++++|++++++.||.| ||+|.|.+... ..+.|.|+|||++..+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~---~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG---STTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEEC---CeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 5799999999998874 6889999999997 47899999999999999 99999998754 3468999999999988
Q ss_pred CCCceEEEEEEccccCC---CceeEEEEEee
Q 008214 340 SSELIGCAQVRLCELEP---GKVKDVWLKLV 367 (573)
Q Consensus 340 ~d~~lG~~~i~l~~l~~---~~~~~~w~~L~ 367 (573)
++++||++.+++.++.. +...+.|++|.
T Consensus 78 ~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 78 ANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 99999999999999966 34578899985
No 106
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.70 E-value=5.1e-17 Score=142.16 Aligned_cols=105 Identities=25% Similarity=0.249 Sum_probs=85.8
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEecc--CCCCEEEEEEEeCC
Q 008214 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD 521 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~V~d~~ 521 (573)
.+.|.|+|++|+||+..+..|.+||||++++... ..++||++++++.||+|||+|.|.+.. ..+..|.|+|||++
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d 93 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAEST 93 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCC
Confidence 4679999999999999988899999999999432 236789999999999999999999864 35678999999999
Q ss_pred CCCC-ceeEEEEEEcceeeecCeEeEEEEcCCC
Q 008214 522 TFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 553 (573)
Q Consensus 522 ~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~ 553 (573)
..++ ++||++.|+... .+...++|..+...
T Consensus 94 ~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~~ 124 (136)
T cd08406 94 EDGKTPNVGHVIIGPAA--SGMGLSHWNQMLAS 124 (136)
T ss_pred CCCCCCeeEEEEECCCC--CChhHHHHHHHHHC
Confidence 8765 799999998764 33445667665443
No 107
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.70 E-value=1.3e-16 Score=141.30 Aligned_cols=102 Identities=27% Similarity=0.421 Sum_probs=86.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEec---------------cCCC
Q 008214 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVE---------------DGLH 510 (573)
Q Consensus 449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~---------------~~~~ 510 (573)
.|+|+|++|+||+. .+|.+||||++++.+. ..+++|+++++|.||+|||+|.|.+. +...
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 38899999999998 5688999999999652 25679999999999999999999985 1223
Q ss_pred CEEEEEEEeCCCCCC-ceeEEEEEEcceeeec-CeEeEEEEcCC
Q 008214 511 DMLIAEVWDHDTFGK-DYMGRCILTLTRVILE-GEYTDCFELDG 552 (573)
Q Consensus 511 ~~L~i~V~d~~~~~~-d~lG~~~i~l~~l~~~-~~~~~~~~L~~ 552 (573)
..|.|+|||++..+. ++||++.|++.++... .....||+|..
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~ 122 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQP 122 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCC
Confidence 579999999988754 6999999999998876 56689999954
No 108
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.70 E-value=4e-16 Score=135.30 Aligned_cols=106 Identities=25% Similarity=0.355 Sum_probs=91.4
Q ss_pred eeEEEEEEEEeecCCCCC-CCCCCCcEEEEEEcC-cceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCCC
Q 008214 447 RGVLSVTVILAENLPASD-LMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDT 522 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~-~~~~~dpyv~v~l~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~~ 522 (573)
.+.|.|+|++|+||+..+ ..+.+||||++++.. .....+|++++++.||+|||.|.|.+... ....|.|+|||++.
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~ 92 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR 92 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc
Confidence 478999999999999988 678899999999842 23567899999999999999999998643 34589999999988
Q ss_pred CCC-ceeEEEEEEcceeeecCeEeEEEEcCC
Q 008214 523 FGK-DYMGRCILTLTRVILEGEYTDCFELDG 552 (573)
Q Consensus 523 ~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~ 552 (573)
.++ ++||++.++|+++........|++|+.
T Consensus 93 ~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 93 FSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred CCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 765 699999999999998888899999863
No 109
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.69 E-value=2.1e-16 Score=133.84 Aligned_cols=100 Identities=22% Similarity=0.373 Sum_probs=84.5
Q ss_pred eEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCC
Q 008214 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS 341 (573)
Q Consensus 262 G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d 341 (573)
|.|.|+|++|++|+..+ ..||||++.++ +++.+|++.++ .||.|||+|.|.+.+... .|.|+|||++.. .|
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g---~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~-~L~v~V~dkd~~-~D 72 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQ---NVKSTTIAVRG-SQPCWEQDFMFEINRLDL-GLVIELWNKGLI-WD 72 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEEC---CEEeEeeECCC-CCCceeeEEEEEEcCCCC-EEEEEEEeCCCc-CC
Confidence 68999999999997544 46899999997 67788988877 599999999999986544 599999999865 89
Q ss_pred CceEEEEEEccccCCCcee--EEEEEeeecc
Q 008214 342 ELIGCAQVRLCELEPGKVK--DVWLKLVKDL 370 (573)
Q Consensus 342 ~~lG~~~i~l~~l~~~~~~--~~w~~L~~~~ 370 (573)
++||++.++|.++..+... ..|++|.+..
T Consensus 73 D~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~~ 103 (127)
T cd08394 73 TLVGTVWIPLSTIRQSNEEGPGEWLTLDSEV 103 (127)
T ss_pred CceEEEEEEhHHcccCCCCCCCccEecChHH
Confidence 9999999999999765444 8999997544
No 110
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.69 E-value=2.3e-16 Score=135.81 Aligned_cols=94 Identities=26% Similarity=0.415 Sum_probs=83.0
Q ss_pred CcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEec-CCCcEEEEEEEeCCC
Q 008214 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-ESTQHLVVRIYDDEG 337 (573)
Q Consensus 259 ~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~-~~~~~l~i~v~d~~~ 337 (573)
+..|.|+|+|++|++|+ .+..+.+||||+++++ +++++|++++++.||+|||+|.|.... ...+.|.|+|||++.
T Consensus 25 ~~~~~L~V~V~~A~~L~-~d~~g~~DPYVkV~~~---~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~ 100 (127)
T cd04032 25 RGLATLTVTVLRATGLW-GDYFTSTDGYVKVFFG---GQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN 100 (127)
T ss_pred CCcEEEEEEEEECCCCC-cCcCCCCCeEEEEEEC---CccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC
Confidence 67899999999999998 4667889999999996 558999999999999999999997533 356799999999999
Q ss_pred CCCCCceEEEEEEccccCC
Q 008214 338 IQSSELIGCAQVRLCELEP 356 (573)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~ 356 (573)
.++|++||++.++|.....
T Consensus 101 ~s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 101 GWDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCCCCeeEEEEEEecCCce
Confidence 9999999999999987653
No 111
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.69 E-value=1e-16 Score=140.06 Aligned_cols=102 Identities=28% Similarity=0.375 Sum_probs=82.9
Q ss_pred eeEEEEEEEEeecCCCCCC--CCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEecc--CCCCEEEEEEEe
Q 008214 447 RGVLSVTVILAENLPASDL--MGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWD 519 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~~--~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~V~d 519 (573)
.+.|.|.|++|+||+..+. .+.+||||++++... ..++||++++++.||+|||.|.|.+.. ..+..|.|+|||
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d 93 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLN 93 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEe
Confidence 4789999999999999873 355899999999642 246799999999999999999999874 246689999999
Q ss_pred CCCCCC-ceeEEEEEEcceeeecCeEeEEEEc
Q 008214 520 HDTFGK-DYMGRCILTLTRVILEGEYTDCFEL 550 (573)
Q Consensus 520 ~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L 550 (573)
++..++ ++||++.+++.. .+.+..+|..+
T Consensus 94 ~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~m 123 (138)
T cd08407 94 QDSPGQSLPLGRCSLGLHT--SGTERQHWEEM 123 (138)
T ss_pred CCCCcCcceeceEEecCcC--CCcHHHHHHHH
Confidence 998876 799999999975 33334555554
No 112
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.69 E-value=1.5e-16 Score=138.37 Aligned_cols=115 Identities=27% Similarity=0.488 Sum_probs=97.3
Q ss_pred EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeC-CCCCceeccEEEEEEecCC----CcEEEEEEEeCCC
Q 008214 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDES----TQHLVVRIYDDEG 337 (573)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~-~~~nP~w~e~f~f~v~~~~----~~~l~i~v~d~~~ 337 (573)
+|+|+|++|++|+..+..+.+||||++++.+ .+.++|+++. ++.||.|||.|.|.+.+.. ...|.|+|||++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~--~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP--SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECC--CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 4789999999999988889999999999973 3667888874 6899999999999998763 5789999999998
Q ss_pred CCCCCceEEEEEEccccCCCce-----eEEEEEeeecccccCCCcceeEEEE
Q 008214 338 IQSSELIGCAQVRLCELEPGKV-----KDVWLKLVKDLDVQRDTKYRGQVHL 384 (573)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~~~~-----~~~w~~L~~~~~~~~~~~~~G~i~l 384 (573)
.++|++||++.+++.++..+.. ...|+.|.+. .++..|.|++
T Consensus 79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~-----~g~~~G~~~~ 125 (125)
T cd04051 79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP-----SGKPQGVLNF 125 (125)
T ss_pred CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC-----CCCcCeEEeC
Confidence 8889999999999999976543 4789998643 4778888864
No 113
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.69 E-value=5.6e-16 Score=135.08 Aligned_cols=112 Identities=28% Similarity=0.488 Sum_probs=97.8
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCCCCCC-ceeEE
Q 008214 454 VILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGR 530 (573)
Q Consensus 454 v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~~~~~-d~lG~ 530 (573)
|++|++|+. ..|.+||||++++++ .+++|++++++.||+|||+|.|.+..+ ....|.|+|||++..++ ++||+
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~--~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~ 77 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRG--VKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGS 77 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECC--EeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEE
Confidence 679999998 578899999999976 678999999999999999999999754 46799999999988765 69999
Q ss_pred EEEEcceeeecCeEeEEEEcCCC----CCeEEEEEEEEEecCC
Q 008214 531 CILTLTRVILEGEYTDCFELDGT----KSGKLKLHLKWMPQPI 569 (573)
Q Consensus 531 ~~i~l~~l~~~~~~~~~~~L~~~----~~G~i~l~l~~~p~~~ 569 (573)
+.++++++..++....|++|.+. ..|+|+++++|.|...
T Consensus 78 ~~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 78 ATVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCCCC
Confidence 99999999988888999999532 3689999999998653
No 114
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.69 E-value=1.7e-16 Score=143.50 Aligned_cols=109 Identities=21% Similarity=0.380 Sum_probs=94.6
Q ss_pred CcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecC--CCCeEEeeeeCCCCCceeccEEEEEEec---CCCcEEEEEEE
Q 008214 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIY 333 (573)
Q Consensus 259 ~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~~~~~~~nP~w~e~f~f~v~~---~~~~~l~i~v~ 333 (573)
.+.|.|.|+|++|+||+..+..+.+||||++++.+. +..+++|++++++.||+|||+|.|.+.. .....|.|+||
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~ 103 (162)
T cd04020 24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW 103 (162)
T ss_pred CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence 478999999999999999998899999999999643 2357899999999999999999998532 23458999999
Q ss_pred eCCCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (573)
Q Consensus 334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 367 (573)
|++.++++++||++.+++.++......+.|+.+.
T Consensus 104 d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 104 DHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred eCCCCCCCceEEEEEEeCCccccCCCccccccCC
Confidence 9999888999999999999997766778998874
No 115
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.69 E-value=6.4e-16 Score=136.95 Aligned_cols=120 Identities=23% Similarity=0.345 Sum_probs=97.2
Q ss_pred EEEEEEeee--ccCCCCCCCCCcEEEEEEe-c-CCCCeEEeeeeCCCCCceeccEEEEEEecCC--------CcEEEEEE
Q 008214 265 EVKLVQAKG--LTNKDLIGKSDPYAVLFVR-P-LPEKTKKSKTINNDLNPIWNEHFEFIVEDES--------TQHLVVRI 332 (573)
Q Consensus 265 ~V~v~~a~~--L~~~d~~g~~dpyv~v~~~-~-~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~--------~~~l~i~v 332 (573)
.++|..|++ |+..+..+.+||||++++. + .+.++.||+++++|+||+|||+|.|.+.... ...|.++|
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V 84 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV 84 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence 345555555 7777777889999999973 2 3456899999999999999999999996432 45799999
Q ss_pred EeCCCC-CCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEe
Q 008214 333 YDDEGI-QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (573)
Q Consensus 333 ~d~~~~-~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (573)
||++.+ .+|++||++.++|..+..+.....|++|.. ......|.|++++...
T Consensus 85 ~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~-----~~k~~Gg~l~v~ir~r 137 (155)
T cd08690 85 YHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD-----GRKATGGKLEVKVRLR 137 (155)
T ss_pred EeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh-----CCCCcCCEEEEEEEec
Confidence 999986 579999999999999987777778999863 3457889999999875
No 116
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.69 E-value=3.4e-16 Score=135.45 Aligned_cols=110 Identities=26% Similarity=0.498 Sum_probs=93.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC---c
Q 008214 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK---D 526 (573)
Q Consensus 450 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~---d 526 (573)
|+|+|++|++|+..+..+.+||||++++++ ...++|++++++.||.|||.|.|.+.. .+.|.|+|||++..++ +
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~ 78 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDG-GQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQG 78 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECC-ccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCc
Confidence 789999999999999889999999999964 467899999999999999999999974 6799999999988753 5
Q ss_pred eeEEEEEEcceeeecCe-EeEEEEcCCC-------CCeEEEEEE
Q 008214 527 YMGRCILTLTRVILEGE-YTDCFELDGT-------KSGKLKLHL 562 (573)
Q Consensus 527 ~lG~~~i~l~~l~~~~~-~~~~~~L~~~-------~~G~i~l~l 562 (573)
+||++.++++++..... ...||+|... ..|+|.+++
T Consensus 79 ~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 79 FLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred eEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 99999999999976543 3789999432 257777765
No 117
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.68 E-value=5.2e-16 Score=132.89 Aligned_cols=113 Identities=35% Similarity=0.557 Sum_probs=97.5
Q ss_pred EEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCCc
Q 008214 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (573)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~ 343 (573)
|+|+|++|++|+..+..+.+||||++++.+ .+.++|+++.++.||.|||+|.|.+.+...+.+.|+|||++..+++++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~--~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~ 78 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNG--EKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDL 78 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECC--CcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCc
Confidence 579999999999988888999999999962 456899999999999999999999987667799999999998889999
Q ss_pred eEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEE
Q 008214 344 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVH 383 (573)
Q Consensus 344 lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~ 383 (573)
||++.+++.++..+.....|++|.+. .+...|.+.
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~~-----g~~~~~~~~ 113 (115)
T cd04040 79 LGSAYIDLSDLEPEETTELTLPLDGQ-----GGGKLGAVF 113 (115)
T ss_pred eEEEEEEHHHcCCCCcEEEEEECcCC-----CCccCceEE
Confidence 99999999999888888999998642 344555554
No 118
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.68 E-value=3.1e-16 Score=137.20 Aligned_cols=110 Identities=22% Similarity=0.300 Sum_probs=91.8
Q ss_pred ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCC--eEEeeeeCCCCCceeccEEEEEEec--CCCcEEEEEE
Q 008214 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRI 332 (573)
Q Consensus 257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~~T~~~~~~~nP~w~e~f~f~v~~--~~~~~l~i~v 332 (573)
+.+..+.|.|+|++|+||+..+..|.+||||++++.+.+.+ ++||++++++.||+|||+|.|.+.. .....|.|+|
T Consensus 10 Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V 89 (136)
T cd08406 10 YLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTV 89 (136)
T ss_pred EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEE
Confidence 44667899999999999999998899999999999864443 5689999999999999999999864 3567899999
Q ss_pred EeCCCCCCCCceEEEEEEccccCCCceeEEEEEeee
Q 008214 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (573)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 368 (573)
||+|..+++++||++.+.... .+...++|..+..
T Consensus 90 ~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~ 123 (136)
T cd08406 90 AESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLA 123 (136)
T ss_pred EeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence 999999999999999987653 4555667766643
No 119
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.68 E-value=2.6e-16 Score=136.57 Aligned_cols=104 Identities=39% Similarity=0.644 Sum_probs=92.8
Q ss_pred eEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeC-CCCCceeccEEEEEEecC---CCcEEEEEEEeCCC
Q 008214 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDE---STQHLVVRIYDDEG 337 (573)
Q Consensus 262 G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~-~~~nP~w~e~f~f~v~~~---~~~~l~i~v~d~~~ 337 (573)
|.|.|+|++|++|++.+..+.+||||++++. .+.++|+++. ++.||.|||+|.|.+... ..+.|.|+|||.+.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCR---TQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEEC---CEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 7899999999999998888999999999986 5667888877 489999999999999876 35689999999999
Q ss_pred CCCCCceEEEEEEccccCCCceeEEEEEeee
Q 008214 338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (573)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 368 (573)
.++|++||++.+++.++..+...+.|+.|.+
T Consensus 78 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 78 FSDDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CCCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 8899999999999999988777899999864
No 120
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.68 E-value=7.4e-16 Score=135.65 Aligned_cols=117 Identities=25% Similarity=0.468 Sum_probs=95.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccC---------CCCEEEEEEEe
Q 008214 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG---------LHDMLIAEVWD 519 (573)
Q Consensus 449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~---------~~~~L~i~V~d 519 (573)
.|+|+|++|++|+..+..|.+||||++.+++ .+++|+++++|.||.|||.|.|.+... ....|.|+|||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~--~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d 79 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLN--QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFD 79 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECC--eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEe
Confidence 6899999999999999999999999999975 678999999999999999999975322 12479999999
Q ss_pred CCCCCC-ceeEEEEE-Ecceeeec---CeEeEEEEcCC--CCCeEEEEEEEEEec
Q 008214 520 HDTFGK-DYMGRCIL-TLTRVILE---GEYTDCFELDG--TKSGKLKLHLKWMPQ 567 (573)
Q Consensus 520 ~~~~~~-d~lG~~~i-~l~~l~~~---~~~~~~~~L~~--~~~G~i~l~l~~~p~ 567 (573)
++..++ ++||++.+ ++..+... ....+||+|.. ...|+|.+++++.+.
T Consensus 80 ~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 80 QDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEV 134 (135)
T ss_pred CcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEe
Confidence 998765 69999987 44444332 34479999963 458999999998874
No 121
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.68 E-value=2.2e-16 Score=134.01 Aligned_cols=102 Identities=32% Similarity=0.596 Sum_probs=87.0
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCCcEEEEEEcC-cceeEeecccCCCCCCeeeeEEEEEeccC---CCCEEEEEEEeCCC
Q 008214 448 GVLSVTVILAENLPASDLM-GKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG---LHDMLIAEVWDHDT 522 (573)
Q Consensus 448 ~~L~V~v~~a~~L~~~~~~-~~~dpyv~v~l~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~---~~~~L~i~V~d~~~ 522 (573)
|.|+|+|++|++|+..+.. +.+||||++++.. ....++|+++++|.||+|||.|.|.+... ....|.++|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999887 8999999999853 23568999999999999999999988643 35689999999998
Q ss_pred CCC-ceeEEEEEEcceeeecCeEeEEEEcCC
Q 008214 523 FGK-DYMGRCILTLTRVILEGEYTDCFELDG 552 (573)
Q Consensus 523 ~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~ 552 (573)
.+. ++||++.+++.++... ..|+++..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~---~~~~~~~~ 108 (111)
T cd04041 81 FTADDRLGRVEIDLKELIED---RNWMGRRE 108 (111)
T ss_pred CCCCCcceEEEEEHHHHhcC---CCCCcccc
Confidence 865 7999999999999744 45877653
No 122
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.68 E-value=4.5e-16 Score=136.50 Aligned_cols=110 Identities=34% Similarity=0.565 Sum_probs=95.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC---cceeEeecccCCCCCCeeeeEEEEEeccC-CCCEEEEEEEeCCCC
Q 008214 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDTF 523 (573)
Q Consensus 448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~L~i~V~d~~~~ 523 (573)
+.|+|+|++|++|+..+..+.+||||++.+.+ ...+++|++++++.||.|||+|.|.+... ....|.|+|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 78999999999999988888999999999963 23578999999999999999999998754 356899999999877
Q ss_pred CC-ceeEEEEEEcceeeecCeEeEEEEcCCCCCeEE
Q 008214 524 GK-DYMGRCILTLTRVILEGEYTDCFELDGTKSGKL 558 (573)
Q Consensus 524 ~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~i 558 (573)
++ ++||++.++++++... ....||+|.+.+.|+.
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~ 127 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEY 127 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-ccCceEECcCcccccc
Confidence 55 6999999999999754 5688999998888864
No 123
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.68 E-value=2.9e-16 Score=139.46 Aligned_cols=102 Identities=38% Similarity=0.581 Sum_probs=89.6
Q ss_pred ceeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcc---------------------------eeEeecccCCCCCCee
Q 008214 445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE---------------------------TRNKTRVVNDCLNPIW 497 (573)
Q Consensus 445 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~---------------------------~~~kT~~~~~t~nP~w 497 (573)
...+.|.|+|++|++|+..+..|.+||||++.+.... ..++|+++++|.||.|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 5679999999999999999999999999999985321 2478999999999999
Q ss_pred eeEEEEEeccCCCCEEEEEEEeCCCCCCceeEEEEEEcceeeecCeEeEEEEc
Q 008214 498 NQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFEL 550 (573)
Q Consensus 498 ne~f~f~v~~~~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~L 550 (573)
||+|.|.+.......|.|+|||++ +++||++.++++++.. ...++||+|
T Consensus 105 nE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 105 NETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred ccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999998766789999999998 6799999999999984 446999987
No 124
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.68 E-value=3e-16 Score=132.94 Aligned_cols=101 Identities=33% Similarity=0.576 Sum_probs=88.2
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEEcCcceeEeecccCCCCCCee-eeEEEEEeccC--CCCEEEEEEEeCCCCCC
Q 008214 450 LSVTVILAENLPASDL-MGKADPYVVLTMKKSETRNKTRVVNDCLNPIW-NQTFDFVVEDG--LHDMLIAEVWDHDTFGK 525 (573)
Q Consensus 450 L~V~v~~a~~L~~~~~-~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~w-ne~f~f~v~~~--~~~~L~i~V~d~~~~~~ 525 (573)
|.|+|++|++|+..+. .+.+||||++++++ .++||++++++.||.| ||.|.|.+... ....|.|+|||++..++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~--~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~ 78 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS--TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSA 78 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECC--eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCC
Confidence 5799999999998874 68899999999976 7889999999999999 99999999753 34689999999998766
Q ss_pred -ceeEEEEEEcceeeec---CeEeEEEEcCC
Q 008214 526 -DYMGRCILTLTRVILE---GEYTDCFELDG 552 (573)
Q Consensus 526 -d~lG~~~i~l~~l~~~---~~~~~~~~L~~ 552 (573)
++||++.+++.++... .....||+|.+
T Consensus 79 ~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 79 NDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 6999999999999873 34689999864
No 125
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.67 E-value=3.4e-16 Score=137.66 Aligned_cols=106 Identities=22% Similarity=0.373 Sum_probs=92.8
Q ss_pred EEEEEEEeeeccCCCCCCCCCcEEEEEEec-CCCCeEEeeeeCCCCCceeccEEEEEEecC---------------CCcE
Q 008214 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRP-LPEKTKKSKTINNDLNPIWNEHFEFIVEDE---------------STQH 327 (573)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~---------------~~~~ 327 (573)
|+|+|++|++|+.+ ..+.+||||++++.. ...+.++|+++.++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 678999999999973 224678999999999999999999998765 4568
Q ss_pred EEEEEEeCCCCCCCCceEEEEEEccccCCCceeEEEEEeeecc
Q 008214 328 LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDL 370 (573)
Q Consensus 328 l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~ 370 (573)
|.|+|||++..+++++||++.+++.++........|++|.+..
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 9999999998889999999999999998777789999997654
No 126
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.67 E-value=1.5e-15 Score=132.74 Aligned_cols=118 Identities=19% Similarity=0.371 Sum_probs=96.2
Q ss_pred EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC----------CCeEEeeeeCCCCCcee-ccEEEEEEecCCCcEEEEE
Q 008214 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----------EKTKKSKTINNDLNPIW-NEHFEFIVEDESTQHLVVR 331 (573)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----------~~~~~T~~~~~~~nP~w-~e~f~f~v~~~~~~~l~i~ 331 (573)
+..|++++|++|+ ++..|++||||++++.+.+ .+.++|+++++++||+| ||+|.|.+. ..+.|.++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence 3578999999998 7778999999999997533 34789999999999999 999999985 35689999
Q ss_pred EEeCCCCCC---CCceEEEEEEccccCCC---ceeEEEEEeeecccccCCCcceeEEEEEE
Q 008214 332 IYDDEGIQS---SELIGCAQVRLCELEPG---KVKDVWLKLVKDLDVQRDTKYRGQVHLEL 386 (573)
Q Consensus 332 v~d~~~~~~---d~~lG~~~i~l~~l~~~---~~~~~w~~L~~~~~~~~~~~~~G~i~l~l 386 (573)
|||++..++ +++||++.+++.++..+ .....|+++.+.. .....+|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~---~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT---PTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC---CCCcEEEEEEEEe
Confidence 999875433 79999999999999654 2366789887653 2567889988865
No 127
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.67 E-value=7.5e-16 Score=134.07 Aligned_cols=109 Identities=34% Similarity=0.700 Sum_probs=92.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCC-----
Q 008214 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF----- 523 (573)
Q Consensus 449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~----- 523 (573)
.|+|+|++|++|+..+..|.+||||++++++ ..++|++++++.||.|||+|.|.+..+ ...|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~--~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK--TKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECC--EeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCccccc
Confidence 6899999999999999889999999999965 678999999999999999999998754 56899999998752
Q ss_pred -------CCceeEEEEEEcceeeecCeEeEEEEcCCC-----CCeEEEEEE
Q 008214 524 -------GKDYMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHL 562 (573)
Q Consensus 524 -------~~d~lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~i~l~l 562 (573)
.+++||.+.+++.++. +...+||.|... .+|+|.+++
T Consensus 79 ~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 79 KQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred ceeccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 3479999999999874 445799999753 368887764
No 128
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.67 E-value=1.3e-16 Score=139.50 Aligned_cols=110 Identities=21% Similarity=0.372 Sum_probs=91.3
Q ss_pred cccCcceEEEEEEEEeeeccCCCC--CCCCCcEEEEEEecCCC--CeEEeeeeCCCCCceeccEEEEEEecC--CCcEEE
Q 008214 256 LELKPVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLV 329 (573)
Q Consensus 256 ~~~~~~G~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~ 329 (573)
.+.+..|.|.|+|++|+||...+. .+.+||||++++.+... .++||++++++.||+|||+|.|.+... ....|.
T Consensus 9 ~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~ 88 (138)
T cd08407 9 SYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVE 88 (138)
T ss_pred EEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEE
Confidence 455678999999999999999873 34589999999986443 367899999999999999999998653 456799
Q ss_pred EEEEeCCCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214 330 VRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (573)
Q Consensus 330 i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 367 (573)
|+|||+|.++++++||++.+++.. .|...++|..+.
T Consensus 89 ~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml 124 (138)
T cd08407 89 LEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEML 124 (138)
T ss_pred EEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHH
Confidence 999999999999999999999975 455566776664
No 129
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.67 E-value=2.6e-16 Score=135.32 Aligned_cols=105 Identities=15% Similarity=0.238 Sum_probs=82.8
Q ss_pred eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC---cceeEeecccCCCC-CCeeeeEEEEEeccCC-CCEEEEEEEeC
Q 008214 446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCL-NPIWNQTFDFVVEDGL-HDMLIAEVWDH 520 (573)
Q Consensus 446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~-nP~wne~f~f~v~~~~-~~~L~i~V~d~ 520 (573)
..+.|+|.|++|+||++.+..+.+||||++++-. ...++||+++++|. ||+|||+|.|.+.... +-.|.|+|||+
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~ 91 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSR 91 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeC
Confidence 4588999999999999876667789999999842 23578999999995 6999999999997542 34789999999
Q ss_pred CCCCC-ceeEEEEEEcceeeecCeEeEEEEcC
Q 008214 521 DTFGK-DYMGRCILTLTRVILEGEYTDCFELD 551 (573)
Q Consensus 521 ~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~ 551 (573)
+..++ ++||++.++.++. .+.+.++|....
T Consensus 92 ~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~ 122 (135)
T cd08692 92 SSVRRKHFLGQVWISSDSS-SSEAVEQWKDTI 122 (135)
T ss_pred CCCcCCceEEEEEECCccC-CchhhhhHHHHH
Confidence 87655 7999999999874 223346666543
No 130
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.67 E-value=4.5e-16 Score=138.11 Aligned_cols=107 Identities=25% Similarity=0.396 Sum_probs=90.5
Q ss_pred EEEEEEEeecCCCCCCC--------------CCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccC-CCCEEE
Q 008214 450 LSVTVILAENLPASDLM--------------GKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLI 514 (573)
Q Consensus 450 L~V~v~~a~~L~~~~~~--------------~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~L~ 514 (573)
|.|+|++|++|+.++.. +.+||||++.+++ .+.||++++++.||+|||+|.|.+..+ ..+.|.
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g--~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~ 79 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG--QKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIK 79 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC--EeeecceEcCCCCCCcceEEEEEeeCCCcCCEEE
Confidence 78999999999998744 3689999999986 567999999999999999999997543 356899
Q ss_pred EEEEeCCCCCC-ceeEEEEEEcceeeecCe-------EeEEEEcCCCCCeEE
Q 008214 515 AEVWDHDTFGK-DYMGRCILTLTRVILEGE-------YTDCFELDGTKSGKL 558 (573)
Q Consensus 515 i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~-------~~~~~~L~~~~~G~i 558 (573)
|+|||++..+. ++||++.+++.++...+. ...|++|.+.+.+..
T Consensus 80 ~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~~ 131 (151)
T cd04018 80 IQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREYS 131 (151)
T ss_pred EEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCccccc
Confidence 99999998854 799999999999877653 369999988766643
No 131
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.67 E-value=4.9e-16 Score=133.50 Aligned_cols=103 Identities=25% Similarity=0.425 Sum_probs=91.2
Q ss_pred eEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCC
Q 008214 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS 341 (573)
Q Consensus 262 G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d 341 (573)
|.|+|+|++|++|+..+..+.+||||++++. +...++|++++++.||.|||+|.|.+... .+.|.|+|||++..++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d 77 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN--GIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKD 77 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEEC--CEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence 7899999999999999888999999999995 23568899999999999999999988754 46899999999999999
Q ss_pred CceEEEEEEccccCCCceeEEEEEeee
Q 008214 342 ELIGCAQVRLCELEPGKVKDVWLKLVK 368 (573)
Q Consensus 342 ~~lG~~~i~l~~l~~~~~~~~w~~L~~ 368 (573)
++||++.+++.++..+ ..+.|+.+..
T Consensus 78 ~~IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 78 RSLGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred CeeeEEEEeHHHhhCC-CCCceEEecC
Confidence 9999999999999876 5678888864
No 132
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.66 E-value=6.2e-16 Score=136.67 Aligned_cols=93 Identities=29% Similarity=0.587 Sum_probs=85.2
Q ss_pred ceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCC
Q 008214 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 340 (573)
Q Consensus 261 ~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~ 340 (573)
.|.|+|+|++|++|+..+. +.+||||+++++ .+.++|++++++.||+|||+|.|.+.++ ...+.|+|||++.+++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g---~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~ 75 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLG---NQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSK 75 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEEC---CEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCC
Confidence 3899999999999998887 889999999997 6789999999999999999999999876 6789999999999999
Q ss_pred CCceEEEEEEccccCCCc
Q 008214 341 SELIGCAQVRLCELEPGK 358 (573)
Q Consensus 341 d~~lG~~~i~l~~l~~~~ 358 (573)
|++||.+.+++.++....
T Consensus 76 dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 76 DDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCEEEEEEEEHHHhhhhh
Confidence 999999999999986543
No 133
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.66 E-value=5.8e-16 Score=130.16 Aligned_cols=93 Identities=24% Similarity=0.378 Sum_probs=79.9
Q ss_pred eEEEEEEEEeecCCCCCCC----CCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccC-CCCEEEEEEEeCCC
Q 008214 448 GVLSVTVILAENLPASDLM----GKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDT 522 (573)
Q Consensus 448 ~~L~V~v~~a~~L~~~~~~----~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~L~i~V~d~~~ 522 (573)
|+|.|+|++|++|+..+.. +.+||||++++++ +++||++++++.||+|||.|.|.+.+. ....|.|+|||++.
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~--~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~ 78 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR--RVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK 78 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECC--EeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC
Confidence 6899999999999987532 3589999999975 678999999999999999999998754 33589999999998
Q ss_pred CCC-ceeEEEEEEcceeeecC
Q 008214 523 FGK-DYMGRCILTLTRVILEG 542 (573)
Q Consensus 523 ~~~-d~lG~~~i~l~~l~~~~ 542 (573)
.++ ++||++.++|+++..+.
T Consensus 79 ~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 79 FSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCCcceEEEEEEHHHHHhhC
Confidence 765 69999999999987653
No 134
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.66 E-value=6.6e-16 Score=137.04 Aligned_cols=102 Identities=21% Similarity=0.294 Sum_probs=86.1
Q ss_pred EEEEEEEEeeeccCCCCCC--------------CCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecC-CCcE
Q 008214 263 TLEVKLVQAKGLTNKDLIG--------------KSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE-STQH 327 (573)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g--------------~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~-~~~~ 327 (573)
.|.|+|++|++|+.+|..+ .+||||++.++ +++.+|++++++.||+|||+|.|.+..+ ..+.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~---g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~ 77 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA---GQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCER 77 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC---CEeeecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence 3789999999999987543 68999999997 5667999999999999999999997654 3568
Q ss_pred EEEEEEeCCCCCCCCceEEEEEEccccCCCce-------eEEEEEee
Q 008214 328 LVVRIYDDEGIQSSELIGCAQVRLCELEPGKV-------KDVWLKLV 367 (573)
Q Consensus 328 l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~-------~~~w~~L~ 367 (573)
|.|+|||+|..++|++||.+.+++.++..... ...|+.+.
T Consensus 78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~ly 124 (151)
T cd04018 78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLY 124 (151)
T ss_pred EEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEee
Confidence 99999999998899999999999999865442 24677764
No 135
>PLN03008 Phospholipase D delta
Probab=99.66 E-value=9.5e-16 Score=164.64 Aligned_cols=130 Identities=22% Similarity=0.512 Sum_probs=110.4
Q ss_pred cceEEEEEEEEeeeccCCCC------------------------------------------CCCCCcEEEEEEecCCCC
Q 008214 260 PVGTLEVKLVQAKGLTNKDL------------------------------------------IGKSDPYAVLFVRPLPEK 297 (573)
Q Consensus 260 ~~G~L~V~v~~a~~L~~~d~------------------------------------------~g~~dpyv~v~~~~~~~~ 297 (573)
-.|.|.++|.+|++|+++|. .+++||||+|.++ +.+
T Consensus 12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg--~~r 89 (868)
T PLN03008 12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVP--QAT 89 (868)
T ss_pred eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEEC--Ccc
Confidence 35899999999999886331 2467999999996 244
Q ss_pred eEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCc
Q 008214 298 TKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTK 377 (573)
Q Consensus 298 ~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~ 377 (573)
..||++++++.||+|||+|.|.+.++. ..|.|+|||+|.++ +++||++.+|+.++..+...+.|++|.+... +..+
T Consensus 90 v~RTrVi~n~~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~--kp~k 165 (868)
T PLN03008 90 LARTRVLKNSQEPLWDEKFNISIAHPF-AYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASG--KPPK 165 (868)
T ss_pred eeeEEeCCCCCCCCcceeEEEEecCCC-ceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCC--CCCC
Confidence 679999999999999999999998764 48999999999986 5899999999999999999999999987653 4556
Q ss_pred ceeEEEEEEEEeecCCCC
Q 008214 378 YRGQVHLELLYCPFGMEN 395 (573)
Q Consensus 378 ~~G~i~l~l~~~p~~~~~ 395 (573)
..|+|+++++|.|++...
T Consensus 166 ~~~kl~v~lqf~pv~~~~ 183 (868)
T PLN03008 166 AETAIFIDMKFTPFDQIH 183 (868)
T ss_pred CCcEEEEEEEEEEccccc
Confidence 789999999999987653
No 136
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.66 E-value=2.3e-16 Score=138.75 Aligned_cols=110 Identities=25% Similarity=0.427 Sum_probs=93.2
Q ss_pred ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEE
Q 008214 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 332 (573)
Q Consensus 257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v 332 (573)
+....|.|.|+|++|++|+..+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.|+|
T Consensus 8 y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V 87 (133)
T cd08384 8 YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV 87 (133)
T ss_pred EcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence 345679999999999999999988999999999997532 3468999999999999999999998643 356899999
Q ss_pred EeCCCCCCCCceEEEEEEccccCCCceeEEEEEeee
Q 008214 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (573)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 368 (573)
||++..+++++||++.+++.. .+.....|+.+.+
T Consensus 88 ~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 88 WDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred EeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 999988889999999999985 3445678887754
No 137
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.66 E-value=9.5e-16 Score=130.21 Aligned_cols=98 Identities=22% Similarity=0.396 Sum_probs=85.3
Q ss_pred EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCC----CcEEEEEEEeCCCC
Q 008214 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES----TQHLVVRIYDDEGI 338 (573)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~----~~~l~i~v~d~~~~ 338 (573)
.|+|+|++|++|. .+.+||||+++++ +++++|++++++.||.|||+|.|.+..+. ...|.|+|||++..
T Consensus 5 ~l~V~v~~a~~L~----~~~~dpyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 5 QVRVRVIEARQLV----GGNIDPVVKVEVG---GQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred EEEEEEEEcccCC----CCCCCCEEEEEEC---CEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 5899999999998 5789999999998 56789999999999999999999986542 46899999999998
Q ss_pred CCCCceEEEEEEccccCCC---ceeEEEEEee
Q 008214 339 QSSELIGCAQVRLCELEPG---KVKDVWLKLV 367 (573)
Q Consensus 339 ~~d~~lG~~~i~l~~l~~~---~~~~~w~~L~ 367 (573)
++|++||++.++|+++..+ .....|++|.
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~ 109 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLT 109 (111)
T ss_pred ccCCccEEEEECCccccCCCCCcceEEEEEee
Confidence 8899999999999999655 3467899884
No 138
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.66 E-value=1.5e-15 Score=131.75 Aligned_cols=106 Identities=34% Similarity=0.580 Sum_probs=93.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCC-CCCCeeeeEEEEEeccC---CCCEEEEEEEeCCCC
Q 008214 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVND-CLNPIWNQTFDFVVEDG---LHDMLIAEVWDHDTF 523 (573)
Q Consensus 448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~---~~~~L~i~V~d~~~~ 523 (573)
|.|.|+|++|++|+..+..+.+||||++++++ ..++|+++++ +.||.|||+|.|.+..+ ....|.|+|||++..
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~--~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~ 78 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT--QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNF 78 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECC--EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccC
Confidence 57999999999999988888999999999975 5678888774 89999999999999876 357899999999887
Q ss_pred CC-ceeEEEEEEcceeeecCeEeEEEEcCCCCC
Q 008214 524 GK-DYMGRCILTLTRVILEGEYTDCFELDGTKS 555 (573)
Q Consensus 524 ~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~~~ 555 (573)
+. ++||++.+++.++..++..+.|+.|...+.
T Consensus 79 ~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~~ 111 (124)
T cd04049 79 SDDDFIGEATIHLKGLFEEGVEPGTAELVPAKY 111 (124)
T ss_pred CCCCeEEEEEEEhHHhhhCCCCcCceEeeccce
Confidence 55 699999999999998888899999988653
No 139
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.65 E-value=3.6e-15 Score=132.16 Aligned_cols=117 Identities=21% Similarity=0.350 Sum_probs=94.6
Q ss_pred EEEEEEeec--CCCCCCCCCCCcEEEEEE--c-CcceeEeecccCCCCCCeeeeEEEEEeccC--------CCCEEEEEE
Q 008214 451 SVTVILAEN--LPASDLMGKADPYVVLTM--K-KSETRNKTRVVNDCLNPIWNQTFDFVVEDG--------LHDMLIAEV 517 (573)
Q Consensus 451 ~V~v~~a~~--L~~~~~~~~~dpyv~v~l--~-~~~~~~kT~~~~~t~nP~wne~f~f~v~~~--------~~~~L~i~V 517 (573)
.++|..|++ |+..+..+..||||++++ . ....+.||+++++|.||+|||+|.|.+... ....|.++|
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V 84 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV 84 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence 345555555 777777888999999997 2 334689999999999999999999999643 145799999
Q ss_pred EeCCCC--CCceeEEEEEEcceeeecCeEeEEEEcC-CC--CCeEEEEEEEEEec
Q 008214 518 WDHDTF--GKDYMGRCILTLTRVILEGEYTDCFELD-GT--KSGKLKLHLKWMPQ 567 (573)
Q Consensus 518 ~d~~~~--~~d~lG~~~i~l~~l~~~~~~~~~~~L~-~~--~~G~i~l~l~~~p~ 567 (573)
||++.+ ++++||++.++|+.+..+.....|++|. +. -+|+|+++++.+..
T Consensus 85 ~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~p 139 (155)
T cd08690 85 YHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLREP 139 (155)
T ss_pred EeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecCC
Confidence 999875 3579999999999998887778899975 43 37999999988743
No 140
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.65 E-value=4.9e-16 Score=137.09 Aligned_cols=105 Identities=29% Similarity=0.381 Sum_probs=87.7
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcc---eeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCC
Q 008214 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE---TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD 521 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~---~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~ 521 (573)
.+.|.|+|++|+||+..+..|.+||||++++.... .++||++++++.||.|||+|.|.+... ....|.|+|||++
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d 93 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSD 93 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECC
Confidence 46799999999999999988999999999985322 367899999999999999999998632 3457999999999
Q ss_pred CCCC-ceeEEEEEEcceeeecCeEeEEEEcCCC
Q 008214 522 TFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 553 (573)
Q Consensus 522 ~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~ 553 (573)
..++ ++||.+.+++.. ......+|+.|...
T Consensus 94 ~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~ 124 (136)
T cd08404 94 RVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNP 124 (136)
T ss_pred CCCCCccEEEEEECCcC--CCchHHHHHHHHhC
Confidence 8865 699999999998 34456888887544
No 141
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=4.9e-17 Score=154.26 Aligned_cols=229 Identities=28% Similarity=0.372 Sum_probs=172.5
Q ss_pred CcccccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC--CeEEeeeeCCCCCceeccEEEE--EEecC-CCcE
Q 008214 253 YSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEF--IVEDE-STQH 327 (573)
Q Consensus 253 ~~~~~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~w~e~f~f--~v~~~-~~~~ 327 (573)
+..+|......+..++..|++|..++.++..|||++..+.+.-. .+.+|++..+++||.|+|+-.. ...+. ....
T Consensus 84 ~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~ 163 (362)
T KOG1013|consen 84 FELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKV 163 (362)
T ss_pred hhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhh
Confidence 44556666778899999999999999999999999999985333 2578889999999999987443 33332 2346
Q ss_pred EEEEEEeCCCCCCCCceEEEEEEccccCCCceeE--EEEEeeeccc--ccCCCcceeEEEEEEEEeecCCCCCccCCCCC
Q 008214 328 LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKD--VWLKLVKDLD--VQRDTKYRGQVHLELLYCPFGMENVFTNPFAP 403 (573)
Q Consensus 328 l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~--~w~~L~~~~~--~~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~ 403 (573)
+++.|.|.+.+..++++|+..+++..+.+.+... .|+.-.-..+ .......+|++.+++.|-
T Consensus 164 ~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~-------------- 229 (362)
T KOG1013|consen 164 LRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYS-------------- 229 (362)
T ss_pred hheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccC--------------
Confidence 7899999999999999999999999887655422 2222110100 011225667777776662
Q ss_pred CCChhhHHHHhccCcccccCCCCCcchhhhchhhhccccccceeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC---c
Q 008214 404 NFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKK---S 480 (573)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~ 480 (573)
....-+.|++.+|..|...|.+|.+||||..++.. .
T Consensus 230 -----------------------------------------s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~ 268 (362)
T KOG1013|consen 230 -----------------------------------------STTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGK 268 (362)
T ss_pred -----------------------------------------cCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcch
Confidence 23456889999999999999999999999999853 2
Q ss_pred ceeEeecccCCCCCCeeeeEEEEEecc--CCCCEEEEEEEeCCCC-CCceeEEEEEEcc
Q 008214 481 ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHDTF-GKDYMGRCILTLT 536 (573)
Q Consensus 481 ~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~V~d~~~~-~~d~lG~~~i~l~ 536 (573)
.-++||.+.++|.+|+||+.|.|.+.. .....+.|.|||.+.. +.|++|-+...+.
T Consensus 269 ~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 269 KFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGY 327 (362)
T ss_pred hhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCccccccc
Confidence 347899999999999999999998873 3567899999999987 4588887665554
No 142
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.64 E-value=2.3e-15 Score=132.37 Aligned_cols=111 Identities=19% Similarity=0.293 Sum_probs=91.7
Q ss_pred cccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCC---eEEeeeeCCCCCceeccEEEEEEec--CCCcEEEE
Q 008214 256 LELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK---TKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVV 330 (573)
Q Consensus 256 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~---~~~T~~~~~~~nP~w~e~f~f~v~~--~~~~~l~i 330 (573)
.+....|.|.|+|++|+||+..+..|.+||||++++.+..++ ++||++++++.||+|||+|.|.+.. .....|.|
T Consensus 9 ~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~ 88 (138)
T cd08408 9 EYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF 88 (138)
T ss_pred EEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence 345678999999999999999998899999999999864332 5789999999999999999999874 35568999
Q ss_pred EEEeCCCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214 331 RIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (573)
Q Consensus 331 ~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 367 (573)
.|||++..+++++||++.+++..... ...++|..+.
T Consensus 89 ~V~~~~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l 124 (138)
T cd08408 89 SVYNKRKMKRKEMIGWFSLGLNSSGE-EEEEHWNEMK 124 (138)
T ss_pred EEEECCCCCCCcEEEEEEECCcCCCc-hHHHHHHHHH
Confidence 99999999999999999998874432 2235677664
No 143
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.64 E-value=7.5e-16 Score=132.50 Aligned_cols=113 Identities=10% Similarity=0.210 Sum_probs=90.1
Q ss_pred cccccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCC--eEEeeeeCCCC-CceeccEEEEEEecCC-CcEEE
Q 008214 254 SELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDL-NPIWNEHFEFIVEDES-TQHLV 329 (573)
Q Consensus 254 ~~~~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~~T~~~~~~~-nP~w~e~f~f~v~~~~-~~~l~ 329 (573)
+-.+.+..|+|+|+|++|+||++.+..+.+||||++++...+++ ++||++++++. ||+|||+|.|.+.... .-.|.
T Consensus 6 sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~ 85 (135)
T cd08692 6 GTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFL 85 (135)
T ss_pred EeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEE
Confidence 34566889999999999999998755667799999999754443 67899999995 6999999999997542 34688
Q ss_pred EEEEeCCCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214 330 VRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (573)
Q Consensus 330 i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 367 (573)
++|||++..+++++||++.+..... .+...++|....
T Consensus 86 v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~ 122 (135)
T cd08692 86 IKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTI 122 (135)
T ss_pred EEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHH
Confidence 8999999888999999999998764 223356776653
No 144
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.64 E-value=5.4e-16 Score=136.60 Aligned_cols=106 Identities=23% Similarity=0.266 Sum_probs=85.7
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcc---eeEeecccCCCCCCeeeeEEEEEecc--CCCCEEEEEEEeCC
Q 008214 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE---TRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD 521 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~---~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~V~d~~ 521 (573)
.+.|.|+|++|+||+..+ .+.+||||++++.... .++||++++++.||+|||.|.|.+.. .....|.|+|||.+
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~ 92 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSG 92 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCC
Confidence 478999999999999988 7889999999986321 36799999999999999999999863 34468999999998
Q ss_pred CCCC-ceeEEEEEEcceeeecCeEeEEEEcCCC
Q 008214 522 TFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 553 (573)
Q Consensus 522 ~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~ 553 (573)
..++ ++||++.|+......+.+..+|..+-..
T Consensus 93 ~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~ 125 (137)
T cd08409 93 GVRKSKLLGRVVLGPFMYARGKELEHWNDMLSK 125 (137)
T ss_pred CCCCcceEEEEEECCcccCCChHHHHHHHHHhC
Confidence 7665 6999999997655445555667665443
No 145
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.64 E-value=3.4e-15 Score=131.93 Aligned_cols=91 Identities=40% Similarity=0.672 Sum_probs=82.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-c
Q 008214 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-D 526 (573)
Q Consensus 448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d 526 (573)
|.|+|+|++|+||+..+. +.+||||++++++ ++++|++++++.||+|||.|.|.+.++ ...|.|+|||++.+++ +
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~--~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd 77 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGN--QKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDD 77 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECC--EEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCC
Confidence 789999999999998887 8899999999976 788999999999999999999999876 7789999999998865 6
Q ss_pred eeEEEEEEcceeeecC
Q 008214 527 YMGRCILTLTRVILEG 542 (573)
Q Consensus 527 ~lG~~~i~l~~l~~~~ 542 (573)
+||++.+++.++....
T Consensus 78 ~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 78 SMGEAEIDLEPLVEAA 93 (145)
T ss_pred EEEEEEEEHHHhhhhh
Confidence 9999999999987543
No 146
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.64 E-value=1.8e-15 Score=132.74 Aligned_cols=98 Identities=27% Similarity=0.380 Sum_probs=86.2
Q ss_pred CcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC----CCeEEeeeeCCCCCceeccEEEEEEecC----CCcEEEE
Q 008214 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDE----STQHLVV 330 (573)
Q Consensus 259 ~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~~~~~~~nP~w~e~f~f~v~~~----~~~~l~i 330 (573)
...+.|+|+|++|++|+..+..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.|
T Consensus 13 ~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~ 92 (133)
T cd04009 13 ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLF 92 (133)
T ss_pred CCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEE
Confidence 4568899999999999998888999999999997433 3578999999999999999999998753 3458999
Q ss_pred EEEeCCCCCCCCceEEEEEEccccCC
Q 008214 331 RIYDDEGIQSSELIGCAQVRLCELEP 356 (573)
Q Consensus 331 ~v~d~~~~~~d~~lG~~~i~l~~l~~ 356 (573)
+|||++..++|++||++.++|+++..
T Consensus 93 ~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 93 TVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 99999999889999999999999864
No 147
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.63 E-value=6.8e-16 Score=136.16 Aligned_cols=108 Identities=23% Similarity=0.370 Sum_probs=91.1
Q ss_pred cCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC--CeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEE
Q 008214 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY 333 (573)
Q Consensus 258 ~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~ 333 (573)
....+.|.|+|++|++|+..+..|.+||||++++.+.+. .+++|++++++.||.|||+|.|.+... ....|.|+||
T Consensus 11 ~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~ 90 (136)
T cd08404 11 QPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVL 90 (136)
T ss_pred eCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 356789999999999999999889999999999974332 257899999999999999999998642 3457899999
Q ss_pred eCCCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (573)
Q Consensus 334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 367 (573)
|++..+++++||++.+++.. .+.....|+.+.
T Consensus 91 d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~ 122 (136)
T cd08404 91 DSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVC 122 (136)
T ss_pred ECCCCCCCccEEEEEECCcC--CCchHHHHHHHH
Confidence 99999999999999999988 345567787774
No 148
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.63 E-value=7.7e-16 Score=135.88 Aligned_cols=105 Identities=28% Similarity=0.396 Sum_probs=85.8
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC---cceeEeecccCCCCCCeeeeEEEEEecc--CCCCEEEEEEEeCC
Q 008214 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD 521 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~V~d~~ 521 (573)
.+.|.|+|++|+||+..+..|.+||||++++.. ...+++|++++++.||.|||+|.|.+.. .....|.|+|||++
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~ 93 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKD 93 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECC
Confidence 478999999999999988889999999999842 1246799999999999999999998762 23568999999999
Q ss_pred CCCC-ceeEEEEEEcceeeecCeEeEEEEcCCC
Q 008214 522 TFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 553 (573)
Q Consensus 522 ~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~ 553 (573)
..++ ++||++.+++.+. +....+|+.+-..
T Consensus 94 ~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~ 124 (136)
T cd08405 94 RLSRNDLIGKIYLGWKSG--GLELKHWKDMLSK 124 (136)
T ss_pred CCCCCcEeEEEEECCccC--CchHHHHHHHHhC
Confidence 8765 6999999999875 3334667666443
No 149
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.63 E-value=1.8e-15 Score=128.32 Aligned_cols=101 Identities=25% Similarity=0.482 Sum_probs=86.7
Q ss_pred CCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCCceEEEEEEccccCC-C
Q 008214 279 LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEP-G 357 (573)
Q Consensus 279 ~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~-~ 357 (573)
..|.+||||+++++. ...++|++++++.||+|||.|.|.+.+...+.|.|+|||++.. +|++||++.++|.++.. +
T Consensus 9 ~~G~~dPYv~v~v~~--~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 9 KTGLLSPYAELYLNG--KLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred cCCCCCceEEEEECC--EEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence 468899999999962 3467999999999999999999999877677899999999988 89999999999999854 3
Q ss_pred ceeEEEEEeeecccccCCCcceeEEEEEEEEee
Q 008214 358 KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (573)
Q Consensus 358 ~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p 390 (573)
.....|++|.. ...|+|++++.|.|
T Consensus 86 ~~~~~w~~L~~--------~~~G~i~~~~~~~p 110 (111)
T cd04052 86 SVGQQWFPLSG--------NGQGRIRISALWKP 110 (111)
T ss_pred hccceeEECCC--------CCCCEEEEEEEEec
Confidence 45679999842 45799999999987
No 150
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.63 E-value=3.8e-15 Score=130.74 Aligned_cols=95 Identities=28% Similarity=0.432 Sum_probs=82.4
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc-----ceeEeecccCCCCCCeeeeEEEEEeccC----CCCEEEEEE
Q 008214 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS-----ETRNKTRVVNDCLNPIWNQTFDFVVEDG----LHDMLIAEV 517 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~-----~~~~kT~~~~~t~nP~wne~f~f~v~~~----~~~~L~i~V 517 (573)
.+.|+|+|++|++|+..+..+.+||||++++.+. ..++||+++++|.||+|||+|.|.+... ....|.|+|
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V 94 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTV 94 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEE
Confidence 4689999999999999888899999999999632 3578999999999999999999998742 356899999
Q ss_pred EeCCCCCC-ceeEEEEEEcceeeec
Q 008214 518 WDHDTFGK-DYMGRCILTLTRVILE 541 (573)
Q Consensus 518 ~d~~~~~~-d~lG~~~i~l~~l~~~ 541 (573)
||++..++ ++||++.++|+++..-
T Consensus 95 ~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 95 KDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred EecCCCCCCcEeEEEEEeHHHCCcc
Confidence 99998874 7999999999998743
No 151
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.63 E-value=2e-15 Score=131.26 Aligned_cols=111 Identities=25% Similarity=0.393 Sum_probs=93.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccC-CCCCCeeeeEEEEEeccCC----CCEEEEEEEeCCCC
Q 008214 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVN-DCLNPIWNQTFDFVVEDGL----HDMLIAEVWDHDTF 523 (573)
Q Consensus 449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~----~~~L~i~V~d~~~~ 523 (573)
.|+|+|++|++|+..+..+.+||||++++++ ..+++|++.. ++.||.|||.|.|.+..+. ...|.|+|||++..
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~-~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~ 79 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP-SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPS 79 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECC-CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCC
Confidence 3789999999999988889999999999975 4567888875 5899999999999998653 67899999999885
Q ss_pred CC-ceeEEEEEEcceeeecCe-----EeEEEEcCC---CCCeEEEE
Q 008214 524 GK-DYMGRCILTLTRVILEGE-----YTDCFELDG---TKSGKLKL 560 (573)
Q Consensus 524 ~~-d~lG~~~i~l~~l~~~~~-----~~~~~~L~~---~~~G~i~l 560 (573)
+. ++||.+.+++.++..+.. ...||+|.+ ...|.|++
T Consensus 80 ~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 80 LGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 54 699999999999987654 368999963 45788764
No 152
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.63 E-value=8.5e-16 Score=179.82 Aligned_cols=119 Identities=27% Similarity=0.570 Sum_probs=107.4
Q ss_pred ceeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCC-CCEEEEEEEeCCCC
Q 008214 445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL-HDMLIAEVWDHDTF 523 (573)
Q Consensus 445 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~-~~~L~i~V~d~~~~ 523 (573)
...|.|+|+|++|.||. +..|.+||||++++++ ..+.||++++++.||+|||.|+|.+.+|. ++.|+|+|||+|.+
T Consensus 1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~-~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f 2053 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN-GPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTF 2053 (2102)
T ss_pred hCCcceEEEEeeccccc--cccCCCCCeEEEEECC-CCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCcc
Confidence 44799999999999998 4468999999999985 34669999999999999999999998874 46799999999999
Q ss_pred CCceeEEEEEEcceeeecCeEeEEEEcCC--CCCeE---EEEEEEEEe
Q 008214 524 GKDYMGRCILTLTRVILEGEYTDCFELDG--TKSGK---LKLHLKWMP 566 (573)
Q Consensus 524 ~~d~lG~~~i~l~~l~~~~~~~~~~~L~~--~~~G~---i~l~l~~~p 566 (573)
++|.||.+.|+|.++..++.+..||+|.+ ++.|+ |+++++|++
T Consensus 2054 ~kd~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2054 GKSSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CCCCCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEecC
Confidence 88999999999999999999999999986 67898 999999986
No 153
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.63 E-value=2.9e-15 Score=132.24 Aligned_cols=110 Identities=30% Similarity=0.449 Sum_probs=91.1
Q ss_pred ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC--CeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEE
Q 008214 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 332 (573)
Q Consensus 257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v 332 (573)
+.+..|.|.|+|++|++|+..+..|.+||||++++.+.+. ..++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v 89 (136)
T cd08402 10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 4567899999999999999999889999999999974322 357899999999999999999998643 234799999
Q ss_pred EeCCCCCCCCceEEEEEEccccCCCceeEEEEEeee
Q 008214 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (573)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 368 (573)
||++.+++|++||++.+++... +.....|+++..
T Consensus 90 ~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 90 LDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred EeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 9999999999999999999763 444566776643
No 154
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.63 E-value=6.4e-15 Score=129.22 Aligned_cols=125 Identities=18% Similarity=0.328 Sum_probs=100.5
Q ss_pred cCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCC
Q 008214 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 337 (573)
Q Consensus 258 ~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~ 337 (573)
.+-...|.|.|++|++|+.++ +|||.+.++ +....||+++.++.||.|+|+|.|..... ...+.|.||+.+.
T Consensus 7 ~R~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld--~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~ 78 (146)
T cd04013 7 RRTENSLKLWIIEAKGLPPKK-----RYYCELCLD--KTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESD 78 (146)
T ss_pred eEEEEEEEEEEEEccCCCCcC-----CceEEEEEC--CEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccC
Confidence 356678999999999998754 799999997 23446999999999999999999975533 4579999987653
Q ss_pred CC----CCCceEEEEEEccccCCCceeEEEEEeeeccccc-----CCCcceeEEEEEEEEee
Q 008214 338 IQ----SSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ-----RDTKYRGQVHLELLYCP 390 (573)
Q Consensus 338 ~~----~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-----~~~~~~G~i~l~l~~~p 390 (573)
.. ++++||.+.||+.++..+...+.||+|....... ......+.|+++++|.+
T Consensus 79 ~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 79 KKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred ccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 22 5799999999999999999999999998654321 01345689999999986
No 155
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.63 E-value=2.3e-15 Score=132.80 Aligned_cols=109 Identities=23% Similarity=0.398 Sum_probs=90.4
Q ss_pred ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEEEec--CCCcEEEEEE
Q 008214 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRI 332 (573)
Q Consensus 257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~v~~--~~~~~l~i~v 332 (573)
+.+..|.|.|+|++|++|+..+..|.+||||++++.+.+ ..+++|++++++.||+|||+|.|.+.. .....|.|+|
T Consensus 10 y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v 89 (136)
T cd08405 10 YNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 345679999999999999998888999999999986422 246789999999999999999998763 2346899999
Q ss_pred EeCCCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (573)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 367 (573)
||++..+++++||++.+++.+. +...+.|+.+.
T Consensus 90 ~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~ 122 (136)
T cd08405 90 MDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDML 122 (136)
T ss_pred EECCCCCCCcEeEEEEECCccC--CchHHHHHHHH
Confidence 9999998999999999999875 44455666664
No 156
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.63 E-value=5.4e-16 Score=136.49 Aligned_cols=109 Identities=29% Similarity=0.480 Sum_probs=90.3
Q ss_pred ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEE
Q 008214 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 332 (573)
Q Consensus 257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v 332 (573)
+....|.|+|+|++|++|++.+..|.+||||++++.+.+ ...++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 9 y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v 88 (134)
T cd08403 9 YLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAV 88 (134)
T ss_pred EcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 446789999999999999999989999999999996433 2467899999999999999999987543 334699999
Q ss_pred EeCCCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (573)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 367 (573)
||++..+++++||++.+++. ..+.....|+.+.
T Consensus 89 ~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~ 121 (134)
T cd08403 89 VDYDRVGHNELIGVCRVGPN--ADGQGREHWNEML 121 (134)
T ss_pred EECCCCCCCceeEEEEECCC--CCCchHHHHHHHH
Confidence 99999999999999999987 3344456777764
No 157
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.62 E-value=1.2e-15 Score=134.56 Aligned_cols=108 Identities=31% Similarity=0.454 Sum_probs=91.1
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEeccCC--CCEEEEEEEeCC
Q 008214 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDGL--HDMLIAEVWDHD 521 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~~--~~~L~i~V~d~~ 521 (573)
.+.|.|+|++|+||+..+..+.+||||++++... ..+++|++++++.||.|||+|.|.+.... ...|.|+|||.+
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~ 92 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKD 92 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecC
Confidence 4789999999999999888889999999999643 23679999999999999999999987542 578999999998
Q ss_pred CCCC-ceeEEEEEEcceeeecCeEeEEEEcCCCCCe
Q 008214 522 TFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSG 556 (573)
Q Consensus 522 ~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G 556 (573)
..+. ++||.+.+++++ .+...++|++|...+..
T Consensus 93 ~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~ 126 (134)
T cd00276 93 SVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRK 126 (134)
T ss_pred CCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCC
Confidence 7655 699999999999 55566899998766543
No 158
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.62 E-value=8.5e-15 Score=126.93 Aligned_cols=117 Identities=24% Similarity=0.420 Sum_probs=93.5
Q ss_pred EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 008214 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (573)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~ 342 (573)
.|.|+|++|+ |...+..+.+||||+++++. ...++|++++++.||+|||+|.|.+. ..+.|.|+|||++..+.|+
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~--~~~~kT~v~~~t~~P~Wne~f~~~~~--~~~~l~~~V~d~~~~~~~~ 77 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDG--QPPKKTEVSKKTSNPKWNEHFTVLVT--PQSTLEFKVWSHHTLKADV 77 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECC--cccEEeeeeCCCCCCccccEEEEEeC--CCCEEEEEEEeCCCCCCCc
Confidence 6899999998 55555578899999999972 23789999999999999999999986 3568999999999988999
Q ss_pred ceEEEEEEccccCCCc---e--eEEEEEeeecccccCCCcceeEEEEEE
Q 008214 343 LIGCAQVRLCELEPGK---V--KDVWLKLVKDLDVQRDTKYRGQVHLEL 386 (573)
Q Consensus 343 ~lG~~~i~l~~l~~~~---~--~~~w~~L~~~~~~~~~~~~~G~i~l~l 386 (573)
+||++.++|.++.... . ...|+.+.+.. .......|++++++
T Consensus 78 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~G~~~~~~ 124 (125)
T cd04021 78 LLGEASLDLSDILKNHNGKLENVKLTLNLSSEN--KGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEEHHHhHhhcCCCccceEEEEEEEccC--CCcceeeeeEEEEe
Confidence 9999999999986432 2 23578876432 11346789988875
No 159
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.62 E-value=1.2e-15 Score=134.74 Aligned_cols=106 Identities=30% Similarity=0.471 Sum_probs=86.7
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCC
Q 008214 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD 521 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~ 521 (573)
.+.|.|+|++|++|+..+..|.+||||++++... ..+++|++++++.||.|||+|.|.+... ....|.|+|||++
T Consensus 14 ~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~ 93 (136)
T cd08402 14 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYD 93 (136)
T ss_pred CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCC
Confidence 4789999999999999998899999999999531 2467899999999999999999998632 2358999999999
Q ss_pred CCCC-ceeEEEEEEcceeeecCeEeEEEEcCCCC
Q 008214 522 TFGK-DYMGRCILTLTRVILEGEYTDCFELDGTK 554 (573)
Q Consensus 522 ~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 554 (573)
..++ ++||++.+++... +.+..+|+.+-..+
T Consensus 94 ~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~~ 125 (136)
T cd08402 94 RIGKNDPIGKVVLGCNAT--GAELRHWSDMLASP 125 (136)
T ss_pred CCCCCceeEEEEECCccC--ChHHHHHHHHHhCC
Confidence 8866 6999999999863 34456777765543
No 160
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.62 E-value=5.8e-15 Score=126.38 Aligned_cols=109 Identities=38% Similarity=0.608 Sum_probs=94.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-cee
Q 008214 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYM 528 (573)
Q Consensus 450 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d~l 528 (573)
|+|+|++|++|+..+..+.+||||++.+++ ...++|+++.++.||.|||+|.|.+.......+.|+|||++..+. ++|
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~-~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~i 79 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNG-EKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLL 79 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECC-CcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCce
Confidence 578999999999988888999999999965 456899999999999999999999987667899999999988765 699
Q ss_pred EEEEEEcceeeecCeEeEEEEcCCC---CCeEEE
Q 008214 529 GRCILTLTRVILEGEYTDCFELDGT---KSGKLK 559 (573)
Q Consensus 529 G~~~i~l~~l~~~~~~~~~~~L~~~---~~G~i~ 559 (573)
|++.+++.++..+.....|++|.+. ..|.+.
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~~g~~~~~~~~ 113 (115)
T cd04040 80 GSAYIDLSDLEPEETTELTLPLDGQGGGKLGAVF 113 (115)
T ss_pred EEEEEEHHHcCCCCcEEEEEECcCCCCccCceEE
Confidence 9999999999888788999999754 345554
No 161
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.62 E-value=5.2e-15 Score=127.16 Aligned_cols=109 Identities=24% Similarity=0.430 Sum_probs=93.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-c
Q 008214 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-D 526 (573)
Q Consensus 448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d 526 (573)
|.|.|+|++|++|+..+..+.+||||++++++ ...++|++++++.||.|||.|.|.+..+ .+.|.|+|||++..++ +
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~-~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~ 78 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNG-IVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDR 78 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECC-EEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCC
Confidence 67999999999999998889999999999964 3678999999999999999999998764 5789999999998866 5
Q ss_pred eeEEEEEEcceeeecCeEeEEEEcCCCCCeEEE
Q 008214 527 YMGRCILTLTRVILEGEYTDCFELDGTKSGKLK 559 (573)
Q Consensus 527 ~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~i~ 559 (573)
+||++.+++.++... ....||.|.+...+.+.
T Consensus 79 ~IG~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~ 110 (120)
T cd04045 79 SLGSVEINVSDLIKK-NEDGKYVEYDDEEERLK 110 (120)
T ss_pred eeeEEEEeHHHhhCC-CCCceEEecCCCcceee
Confidence 999999999999876 45888888766555443
No 162
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.62 E-value=3.9e-15 Score=126.41 Aligned_cols=100 Identities=21% Similarity=0.272 Sum_probs=86.1
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccC----CCCEEEEEEEeCCC
Q 008214 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG----LHDMLIAEVWDHDT 522 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~----~~~~L~i~V~d~~~ 522 (573)
...|+|+|++|++|+ .+.+||||++++++ ++++|++++++.||.|||.|.|.+..+ .+..|.|+|||++.
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~--~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGG--QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECC--EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 368999999999998 47899999999986 677999999999999999999998643 24689999999998
Q ss_pred CCC-ceeEEEEEEcceeeecC---eEeEEEEcCC
Q 008214 523 FGK-DYMGRCILTLTRVILEG---EYTDCFELDG 552 (573)
Q Consensus 523 ~~~-d~lG~~~i~l~~l~~~~---~~~~~~~L~~ 552 (573)
.+. ++||.+.++|+++..+. ....||+|.+
T Consensus 77 ~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 77 LRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 765 79999999999997663 3589999864
No 163
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.62 E-value=1.8e-15 Score=130.90 Aligned_cols=93 Identities=28% Similarity=0.380 Sum_probs=81.6
Q ss_pred EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 008214 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (573)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~ 342 (573)
.|+|+|++|++|++.+..|.+||||++++++. ....+|++++++.||+|||+|.|.+..+..+.|.|+|||++..++|+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~-~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKK-KINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCe-eccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence 37899999999999998899999999999732 23367888889999999999999987777789999999999988999
Q ss_pred ceEEEEEEccccCC
Q 008214 343 LIGCAQVRLCELEP 356 (573)
Q Consensus 343 ~lG~~~i~l~~l~~ 356 (573)
+||++.+++++...
T Consensus 80 ~iG~~~i~l~~~~~ 93 (124)
T cd04037 80 LIGETVIDLEDRFF 93 (124)
T ss_pred eeEEEEEeeccccc
Confidence 99999999987653
No 164
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.61 E-value=6.4e-15 Score=129.56 Aligned_cols=111 Identities=27% Similarity=0.465 Sum_probs=88.3
Q ss_pred ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEE
Q 008214 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 332 (573)
Q Consensus 257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v 332 (573)
+.+..|.|.|+|++|++|+..+..|.+||||++++.+.. .++++|++++++.||+|||+|.|.+... ....|.|+|
T Consensus 9 y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V 88 (135)
T cd08410 9 YLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTV 88 (135)
T ss_pred ECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEE
Confidence 345679999999999999999988999999999986422 2457899999999999999999998532 334799999
Q ss_pred EeCCCCCCCCceEEEEEEccccCCCceeEEEEEeee
Q 008214 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (573)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 368 (573)
||++..+++++||++.+....... ...++|..+..
T Consensus 89 ~d~d~~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~ 123 (135)
T cd08410 89 YGHNVKSSNDFIGRIVIGQYSSGP-SETNHWRRMLN 123 (135)
T ss_pred EeCCCCCCCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence 999998999999998866533322 23466777653
No 165
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.61 E-value=1.2e-14 Score=127.61 Aligned_cols=118 Identities=14% Similarity=0.247 Sum_probs=97.2
Q ss_pred eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCC-CC-
Q 008214 446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD-TF- 523 (573)
Q Consensus 446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~-~~- 523 (573)
....|.|.|.+|++|+.++ +|||++.+++ ....||+++.++.||.|+|.|.|.+..+ -..|.|.|+..+ ..
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~-~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~ 81 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKK-----RYYCELCLDK-TLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKK 81 (146)
T ss_pred EEEEEEEEEEEccCCCCcC-----CceEEEEECC-EEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCccc
Confidence 3568999999999998854 7999999986 4557999999999999999999987643 467999997544 22
Q ss_pred ---CCceeEEEEEEcceeeecCeEeEEEEcCCC-------------CCeEEEEEEEEEecCCC
Q 008214 524 ---GKDYMGRCILTLTRVILEGEYTDCFELDGT-------------KSGKLKLHLKWMPQPIY 570 (573)
Q Consensus 524 ---~~d~lG~~~i~l~~l~~~~~~~~~~~L~~~-------------~~G~i~l~l~~~p~~~~ 570 (573)
++++||.+.|++.++..+...++||+|.+. +.+.|+++++|.+.-++
T Consensus 82 ~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~~l 144 (146)
T cd04013 82 KKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTRVL 144 (146)
T ss_pred cccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEeeeC
Confidence 236999999999999988888999999532 23799999999987664
No 166
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.61 E-value=5.2e-16 Score=151.72 Aligned_cols=110 Identities=35% Similarity=0.603 Sum_probs=94.2
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEc---CcceeEeecccCCCCCCeeeeEEEEEeccC-CCCEEEEEEEeCCC
Q 008214 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMK---KSETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDT 522 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~---~~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~L~i~V~d~~~ 522 (573)
...|+|+|.+|+||.++|.+|.+||||++.+- ....++||++++.++||+|||+|+|.+... .+..|.|+|||+|.
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr 258 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR 258 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc
Confidence 36799999999999999999999999999993 234688999999999999999999998744 45689999999998
Q ss_pred CCC-ceeEEEEEEcceeeecCeEeEEEEcCCCCCeE
Q 008214 523 FGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSGK 557 (573)
Q Consensus 523 ~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~ 557 (573)
.++ |++|..++.++++..++ .+.||.|-.+..|+
T Consensus 259 TsRNDFMGslSFgisEl~K~p-~~GWyKlLsqeEGE 293 (683)
T KOG0696|consen 259 TSRNDFMGSLSFGISELQKAP-VDGWYKLLSQEEGE 293 (683)
T ss_pred cccccccceecccHHHHhhcc-hhhHHHHhhhhcCc
Confidence 876 89999999999987553 48899986655454
No 167
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.61 E-value=6.2e-15 Score=129.24 Aligned_cols=107 Identities=34% Similarity=0.567 Sum_probs=93.3
Q ss_pred eEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEEEecC-CCcEEEEEEEeCCCC
Q 008214 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDEGI 338 (573)
Q Consensus 262 G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~v~~~-~~~~l~i~v~d~~~~ 338 (573)
|.|+|+|++|++|+..+..+.+||||++++.+.+ ...++|++++++.||.|||+|.|.+... ..+.|.|+|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 8899999999999998888899999999997422 3578999999999999999999998754 346899999999988
Q ss_pred CCCCceEEEEEEccccCCCceeEEEEEeeec
Q 008214 339 QSSELIGCAQVRLCELEPGKVKDVWLKLVKD 369 (573)
Q Consensus 339 ~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~ 369 (573)
+++++||++.+++.++... ..+.|++|...
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 8999999999999999755 67899999643
No 168
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.61 E-value=6.1e-15 Score=127.12 Aligned_cols=100 Identities=26% Similarity=0.436 Sum_probs=86.8
Q ss_pred EEEeeeccCCCCCCCCCcEEEEEEecCC----CCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCC----CC
Q 008214 268 LVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG----IQ 339 (573)
Q Consensus 268 v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~----~~ 339 (573)
.++|++|++.+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+.....+.|.|+|||++. .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 3789999999988999999999998532 125899999999999999999998765556789999999997 78
Q ss_pred CCCceEEEEEEccccCCCceeEEEEEee
Q 008214 340 SSELIGCAQVRLCELEPGKVKDVWLKLV 367 (573)
Q Consensus 340 ~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 367 (573)
++++||++.+++.++..+.....|+.|.
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 9999999999999998877778888883
No 169
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.61 E-value=2.1e-15 Score=132.87 Aligned_cols=111 Identities=23% Similarity=0.386 Sum_probs=92.7
Q ss_pred ccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC--CeEEeeeeCCCCCceeccEEEEEEec--CCCcEEEEEE
Q 008214 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRI 332 (573)
Q Consensus 257 ~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~w~e~f~f~v~~--~~~~~l~i~v 332 (573)
+.+..+.|.|+|++|+||+..+ .+.+||||++++.+... .+++|++++++.||+|||+|.|.+.. .....|.|+|
T Consensus 10 y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V 88 (137)
T cd08409 10 YNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSV 88 (137)
T ss_pred ECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEE
Confidence 3456799999999999999888 78899999999986433 36789999999999999999999863 3446899999
Q ss_pred EeCCCCCCCCceEEEEEEccccCCCceeEEEEEeee
Q 008214 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (573)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 368 (573)
||++..+++++||++.++......+...++|..+..
T Consensus 89 ~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 89 MQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred EeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 999998999999999999766666666677877653
No 170
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.61 E-value=2.2e-15 Score=132.49 Aligned_cols=106 Identities=29% Similarity=0.426 Sum_probs=88.1
Q ss_pred eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeC
Q 008214 446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDH 520 (573)
Q Consensus 446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~ 520 (573)
..+.|.|+|++|+||+..+..|.+||||++++... ..+++|++++++.||.|||+|.|.+... ....|.|+|||+
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~ 90 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDK 90 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeC
Confidence 35899999999999999998899999999999532 3467999999999999999999998643 346899999999
Q ss_pred CCCCC-ceeEEEEEEcceeeecCeEeEEEEcCCC
Q 008214 521 DTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 553 (573)
Q Consensus 521 ~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~ 553 (573)
+..++ ++||.+.+++.. .+....+||.+...
T Consensus 91 d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~ 122 (133)
T cd08384 91 DIGKSNDYIGGLQLGINA--KGERLRHWLDCLKN 122 (133)
T ss_pred CCCCCccEEEEEEEecCC--CCchHHHHHHHHhC
Confidence 87765 799999999986 33445788887543
No 171
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.60 E-value=8.7e-15 Score=126.83 Aligned_cols=107 Identities=25% Similarity=0.423 Sum_probs=90.1
Q ss_pred cCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEEEecC---CCcEEEEEE
Q 008214 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRI 332 (573)
Q Consensus 258 ~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~v~~~---~~~~l~i~v 332 (573)
....+.|+|+|++|++|++.+..+.+||||++++.+.. ...++|++++++.||+|||+|.|..... ....+.|+|
T Consensus 11 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v 90 (123)
T cd04035 11 DPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLV 90 (123)
T ss_pred eCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEE
Confidence 34568999999999999998888899999999986432 3478999999999999999999863322 356899999
Q ss_pred EeCCCCCCCCceEEEEEEccccCCCceeEEEEE
Q 008214 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLK 365 (573)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~ 365 (573)
||++.. ++++||++.++++++..+...+.|+.
T Consensus 91 ~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 91 LDEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred EEcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence 999988 89999999999999988877766654
No 172
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.60 E-value=4.8e-15 Score=130.39 Aligned_cols=104 Identities=24% Similarity=0.421 Sum_probs=90.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEcCc--ceeEeecccCCCCCCeeeeEEEEEeccC---------------CCCE
Q 008214 450 LSVTVILAENLPASDLMGKADPYVVLTMKKS--ETRNKTRVVNDCLNPIWNQTFDFVVEDG---------------LHDM 512 (573)
Q Consensus 450 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~~---------------~~~~ 512 (573)
|+|+|++|++|+.. ..+.+||||+++++.. ..+++|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57899999999988 7789999999999731 3678999999999999999999998765 4568
Q ss_pred EEEEEEeCCCCCC-ceeEEEEEEcceeeecCeEeEEEEcCCCC
Q 008214 513 LIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTK 554 (573)
Q Consensus 513 L~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 554 (573)
|.|+|||++..++ ++||++.+++.++...+....||+|...+
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 9999999998754 79999999999998777779999997653
No 173
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.60 E-value=2.4e-15 Score=132.31 Aligned_cols=106 Identities=26% Similarity=0.327 Sum_probs=86.1
Q ss_pred eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc-c---eeEeecccCCCCCCeeeeEEEEEecc--CCCCEEEEEEEe
Q 008214 446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS-E---TRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWD 519 (573)
Q Consensus 446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~-~---~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~V~d 519 (573)
..+.|.|+|++|+||+..+..|.+||||++++... . .++||++++++.||+|||+|.|.+.. .....|.|+|||
T Consensus 13 ~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~ 92 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYN 92 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEE
Confidence 35789999999999999988899999999999531 1 35799999999999999999999873 355699999999
Q ss_pred CCCCCC-ceeEEEEEEcceeeecCeEeEEEEcCC
Q 008214 520 HDTFGK-DYMGRCILTLTRVILEGEYTDCFELDG 552 (573)
Q Consensus 520 ~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~ 552 (573)
.+..++ ++||++.+++...- ..+..+|+.+..
T Consensus 93 ~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~ 125 (138)
T cd08408 93 KRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKE 125 (138)
T ss_pred CCCCCCCcEEEEEEECCcCCC-chHHHHHHHHHh
Confidence 987765 69999999987542 223356777643
No 174
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.60 E-value=9.8e-15 Score=128.36 Aligned_cols=106 Identities=23% Similarity=0.394 Sum_probs=84.1
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEecc--CCCCEEEEEEEeCC
Q 008214 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD 521 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~V~d~~ 521 (573)
.+.|.|+|++|++|+..+..|.+||||++++... ..+++|+++++|.||.|||+|.|.+.. .....|.|+|||++
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d 92 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHN 92 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 4789999999999999998899999999998432 246799999999999999999999853 23447999999998
Q ss_pred CCCC-ceeEEEEEEcceeeecCeEeEEEEcCCC
Q 008214 522 TFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 553 (573)
Q Consensus 522 ~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~ 553 (573)
..++ ++||++.|+..... .....+|+.|...
T Consensus 93 ~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~ 124 (135)
T cd08410 93 VKSSNDFIGRIVIGQYSSG-PSETNHWRRMLNS 124 (135)
T ss_pred CCCCCcEEEEEEEcCccCC-chHHHHHHHHHhC
Confidence 8765 69999987764432 2234677776544
No 175
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.60 E-value=3.8e-16 Score=152.67 Aligned_cols=109 Identities=32% Similarity=0.574 Sum_probs=95.2
Q ss_pred cceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC--CeEEeeeeCCCCCceeccEEEEEEecC-CCcEEEEEEEeCC
Q 008214 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDE 336 (573)
Q Consensus 260 ~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~w~e~f~f~v~~~-~~~~l~i~v~d~~ 336 (573)
....|+|+|.+|+||.++|.+|.+||||++.+-|.++ .+++|++++.++||+|||+|.|.+... ....|.++|||+|
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD 257 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD 257 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence 3567899999999999999999999999999976433 368899999999999999999998754 3568999999999
Q ss_pred CCCCCCceEEEEEEccccCCCceeEEEEEeeec
Q 008214 337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD 369 (573)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~ 369 (573)
+.++++++|..++.+++|...+ .+.|++|...
T Consensus 258 rTsRNDFMGslSFgisEl~K~p-~~GWyKlLsq 289 (683)
T KOG0696|consen 258 RTSRNDFMGSLSFGISELQKAP-VDGWYKLLSQ 289 (683)
T ss_pred ccccccccceecccHHHHhhcc-hhhHHHHhhh
Confidence 9999999999999999997654 6789998653
No 176
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.60 E-value=4.4e-15 Score=128.53 Aligned_cols=118 Identities=24% Similarity=0.413 Sum_probs=90.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-ce
Q 008214 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DY 527 (573)
Q Consensus 449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d~ 527 (573)
+|+|+|++|++|+..+..|.+||||++++++.....||.+++++.||.|||+|.|.+..+..+.|.|+|||++..++ ++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 37899999999999998899999999999864445688888999999999999999877777899999999998755 79
Q ss_pred eEEEEEEcceeeecCeEeEEEEcCC--CCCeEEEEEEEEEec
Q 008214 528 MGRCILTLTRVILEGEYTDCFELDG--TKSGKLKLHLKWMPQ 567 (573)
Q Consensus 528 lG~~~i~l~~l~~~~~~~~~~~L~~--~~~G~i~l~l~~~p~ 567 (573)
||++.+++.+.... ...+++.+.. ...|.++..-.+.|.
T Consensus 81 iG~~~i~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (124)
T cd04037 81 IGETVIDLEDRFFS-KHRATCGLPPTYEESGPNQWRDSLKPS 121 (124)
T ss_pred eEEEEEeecccccc-hHHHhccCCCcccccCceecCcccCcc
Confidence 99999999987542 1112222221 145666555444443
No 177
>PLN03008 Phospholipase D delta
Probab=99.60 E-value=9.1e-15 Score=157.17 Aligned_cols=124 Identities=23% Similarity=0.487 Sum_probs=105.9
Q ss_pred ceeeEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEEEcCcce
Q 008214 445 IIRGVLSVTVILAENLPASDL------------------------------------------MGKADPYVVLTMKKSET 482 (573)
Q Consensus 445 ~~~~~L~V~v~~a~~L~~~~~------------------------------------------~~~~dpyv~v~l~~~~~ 482 (573)
..-|.|.++|++|++|++++. .+.+||||++.+++ .+
T Consensus 11 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~-~r 89 (868)
T PLN03008 11 LLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQ-AT 89 (868)
T ss_pred EeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECC-cc
Confidence 456889999999999985221 23679999999975 45
Q ss_pred eEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCCceeEEEEEEcceeeecCeEeEEEEcCCC------CCe
Q 008214 483 RNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGT------KSG 556 (573)
Q Consensus 483 ~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~L~~~------~~G 556 (573)
+.||++++++.||+|||+|.|.|.++ ...|.|+|+|++.+++++||++.|++.++..+...+.|++|.+. +.|
T Consensus 90 v~RTrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~ 168 (868)
T PLN03008 90 LARTRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAET 168 (868)
T ss_pred eeeEEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCc
Confidence 67999999999999999999999985 45899999999999889999999999999998888999999542 368
Q ss_pred EEEEEEEEEecCCC
Q 008214 557 KLKLHLKWMPQPIY 570 (573)
Q Consensus 557 ~i~l~l~~~p~~~~ 570 (573)
+|+++++|.|....
T Consensus 169 kl~v~lqf~pv~~~ 182 (868)
T PLN03008 169 AIFIDMKFTPFDQI 182 (868)
T ss_pred EEEEEEEEEEcccc
Confidence 99999999997653
No 178
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.60 E-value=1.8e-14 Score=124.79 Aligned_cols=102 Identities=28% Similarity=0.398 Sum_probs=83.9
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC---cceeEeecccCCCCCCeeeeEEEEEecc---CCCCEEEEEEEeC
Q 008214 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVED---GLHDMLIAEVWDH 520 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~---~~~~~L~i~V~d~ 520 (573)
.+.|+|+|++|++|+..+..+.+||||++++.. ...+++|++++++.||.|||.|.|.... ..+..|.|+|||+
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~ 93 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDE 93 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEc
Confidence 478999999999999988888999999999842 2347899999999999999999996322 2356899999999
Q ss_pred CCCCCceeEEEEEEcceeeecCeEeEEE
Q 008214 521 DTFGKDYMGRCILTLTRVILEGEYTDCF 548 (573)
Q Consensus 521 ~~~~~d~lG~~~i~l~~l~~~~~~~~~~ 548 (573)
+..++++||.+.++++++..++...-|+
T Consensus 94 ~~~~~~~iG~~~i~l~~l~~~~~~~~~~ 121 (123)
T cd04035 94 DRFGNDFLGETRIPLKKLKPNQTKQFNI 121 (123)
T ss_pred CCcCCeeEEEEEEEcccCCCCcceEeec
Confidence 8775579999999999998665444443
No 179
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.59 E-value=2.4e-14 Score=125.10 Aligned_cols=111 Identities=24% Similarity=0.462 Sum_probs=90.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc-----------ceeEeecccCCCCCCee-eeEEEEEeccCCCCEEEEE
Q 008214 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKS-----------ETRNKTRVVNDCLNPIW-NQTFDFVVEDGLHDMLIAE 516 (573)
Q Consensus 449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~-----------~~~~kT~~~~~t~nP~w-ne~f~f~v~~~~~~~L~i~ 516 (573)
...|++++|+||+ .+..|.+||||++.+... .+++||++++++.||+| ||.|.|.+. .++.|.|+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence 4678999999998 677899999999999532 23789999999999999 999999986 35789999
Q ss_pred EEeCCCCC----CceeEEEEEEcceeeecC---eEeEEEEcCCC-----CCeEEEEEE
Q 008214 517 VWDHDTFG----KDYMGRCILTLTRVILEG---EYTDCFELDGT-----KSGKLKLHL 562 (573)
Q Consensus 517 V~d~~~~~----~d~lG~~~i~l~~l~~~~---~~~~~~~L~~~-----~~G~i~l~l 562 (573)
|||++..+ +++||++.++++++.... ....||+|... -+|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 99976533 479999999999998663 35789999753 267777765
No 180
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.59 E-value=4.6e-15 Score=130.53 Aligned_cols=104 Identities=31% Similarity=0.412 Sum_probs=84.4
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCC
Q 008214 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD 521 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~ 521 (573)
.+.|+|+|++|++|+..+..|.+||||++++... ..+++|++++++.||.|||+|.|.+... ....|.|+|||++
T Consensus 13 ~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~ 92 (134)
T cd08403 13 AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYD 92 (134)
T ss_pred CCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECC
Confidence 4789999999999999998999999999998531 2467999999999999999999988632 3347999999999
Q ss_pred CCCC-ceeEEEEEEcceeeecCeEeEEEEcCC
Q 008214 522 TFGK-DYMGRCILTLTRVILEGEYTDCFELDG 552 (573)
Q Consensus 522 ~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~ 552 (573)
..+. ++||.+.+++.. .+....+|+.+..
T Consensus 93 ~~~~~~~IG~~~l~~~~--~~~~~~~w~~~~~ 122 (134)
T cd08403 93 RVGHNELIGVCRVGPNA--DGQGREHWNEMLA 122 (134)
T ss_pred CCCCCceeEEEEECCCC--CCchHHHHHHHHH
Confidence 8875 799999999873 2333456776643
No 181
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.59 E-value=2e-14 Score=123.42 Aligned_cols=108 Identities=24% Similarity=0.424 Sum_probs=85.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCC--CCEEEEEEEeCCCCCC-c
Q 008214 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL--HDMLIAEVWDHDTFGK-D 526 (573)
Q Consensus 450 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~--~~~L~i~V~d~~~~~~-d 526 (573)
|.|+|++|++|+.. +.+||||++++++ ...++|+++++ .||.|||+|.|.+.... ...|.|.+||.+..++ .
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~-~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~ 76 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQ-VEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDI 76 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECC-EEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCee
Confidence 78999999999976 7899999999975 34579999988 99999999999987532 3478888898876544 3
Q ss_pred eeEEEEEEcceeeecCeEeEEEEcCCC-----CCeEEEEEEEE
Q 008214 527 YMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKW 564 (573)
Q Consensus 527 ~lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~i~l~l~~ 564 (573)
.+|.+.|. .+..++..++||+|.+. ..|+|+++++|
T Consensus 77 ~~g~v~l~--~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 77 VIGKVALS--KLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEEec--CcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 66665554 44446667899999764 37999999876
No 182
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.59 E-value=2.3e-14 Score=123.09 Aligned_cols=114 Identities=31% Similarity=0.512 Sum_probs=89.3
Q ss_pred EEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCC--CcEEEEEEEeCCCCCCC
Q 008214 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES--TQHLVVRIYDDEGIQSS 341 (573)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~--~~~l~i~v~d~~~~~~d 341 (573)
|+|+|++|++|+.. +.+||||+++++. .+.++|+++++ .||.|||+|.|.+.... ...|.+.+||.+...++
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~--~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQ--VEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD 75 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECC--EEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe
Confidence 78999999999876 7899999999972 34578999988 99999999999987542 34678888988766556
Q ss_pred CceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEE
Q 008214 342 ELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (573)
Q Consensus 342 ~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (573)
..+|. +++..+..+...+.|++|.+.. ......|+|++++.|
T Consensus 76 ~~~g~--v~l~~~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGK--VALSKLDLGQGKDEWFPLTPVD---PDSEVQGSVRLRARY 117 (117)
T ss_pred eEEEE--EEecCcCCCCcceeEEECccCC---CCCCcCceEEEEEEC
Confidence 55665 5566666677789999997542 245678999999875
No 183
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.58 E-value=5.2e-14 Score=122.94 Aligned_cols=119 Identities=25% Similarity=0.404 Sum_probs=96.5
Q ss_pred EEEEEEEEeeeccCCC--CCCCCCcEEEEEEecCC---CCeEEeeeeCCCC-CceeccEEEEEEecCCCcEEEEEEEeCC
Q 008214 263 TLEVKLVQAKGLTNKD--LIGKSDPYAVLFVRPLP---EKTKKSKTINNDL-NPIWNEHFEFIVEDESTQHLVVRIYDDE 336 (573)
Q Consensus 263 ~L~V~v~~a~~L~~~d--~~g~~dpyv~v~~~~~~---~~~~~T~~~~~~~-nP~w~e~f~f~v~~~~~~~l~i~v~d~~ 336 (573)
.|+|+|++|++|+..+ ..+.+||||++++...+ ...++|+++.++. ||.|||+|.|.+..+....|.++|||.+
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999887 57889999999996432 4568899887765 9999999999998766668999999999
Q ss_pred CCCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEE
Q 008214 337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (573)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (573)
.. ++++||.+.++++++..+. .|+.|.... ......|.|.+.++.
T Consensus 83 ~~-~~~~iG~~~~~l~~l~~g~---~~~~l~~~~---~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLRQGY---RHVPLLDSK---GEPLELSTLFVHIDI 127 (128)
T ss_pred CC-CCcEeEEEEEEhHHhcCce---EEEEecCCC---CCCCcceeEEEEEEE
Confidence 87 8999999999999996543 577775432 123566888888764
No 184
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.58 E-value=1.2e-14 Score=125.05 Aligned_cols=91 Identities=32% Similarity=0.442 Sum_probs=79.2
Q ss_pred eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEecc-CCCCEEEEEEEeCCCCC
Q 008214 446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED-GLHDMLIAEVWDHDTFG 524 (573)
Q Consensus 446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~-~~~~~L~i~V~d~~~~~ 524 (573)
..+.|+|+|++|++|+. +..+.+||||++++++ .++||++++++.||+|||+|.|.... .....|.|+|||++..+
T Consensus 26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~--~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s 102 (127)
T cd04032 26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGG--QEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW 102 (127)
T ss_pred CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECC--ccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence 45899999999999985 6678899999999976 58899999999999999999997533 35679999999999885
Q ss_pred C-ceeEEEEEEcceee
Q 008214 525 K-DYMGRCILTLTRVI 539 (573)
Q Consensus 525 ~-d~lG~~~i~l~~l~ 539 (573)
+ ++||++.++|....
T Consensus 103 ~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 103 DDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCeeEEEEEEecCCc
Confidence 5 79999999999765
No 185
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.57 E-value=2.9e-15 Score=132.06 Aligned_cols=109 Identities=28% Similarity=0.430 Sum_probs=93.4
Q ss_pred CcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC--CeEEeeeeCCCCCceeccEEEEEEecCC--CcEEEEEEEe
Q 008214 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDES--TQHLVVRIYD 334 (573)
Q Consensus 259 ~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~w~e~f~f~v~~~~--~~~l~i~v~d 334 (573)
+..|.|.|+|++|++|+..+..+.+||||++++.+... ..++|++++++.||.|||+|.|.+.... ...|.|+|||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d 90 (134)
T cd00276 11 PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVD 90 (134)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEe
Confidence 45689999999999999988888999999999975432 3578999999999999999999987543 5789999999
Q ss_pred CCCCCCCCceEEEEEEccccCCCceeEEEEEeeec
Q 008214 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD 369 (573)
Q Consensus 335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~ 369 (573)
.+..+++++||.+.+++.+ .+...+.|+.|...
T Consensus 91 ~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 91 KDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred cCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 9988899999999999999 56667889888643
No 186
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.57 E-value=1.8e-14 Score=120.41 Aligned_cols=82 Identities=28% Similarity=0.505 Sum_probs=70.6
Q ss_pred EEEEEEEeeeccCCCCCCCCCcEEEEEEecCC--CCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeC------
Q 008214 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD------ 335 (573)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~------ 335 (573)
|.|+|.+|++|+ +.+||||++++.+.+ ...++|+++++|+||+|||+|.|.+. ..+.|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--GSQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--CCCEEEEEEEEccccccc
Confidence 579999999996 569999999997543 35799999999999999999999986 367999999998
Q ss_pred -CCCCCCCceEEEEEEcc
Q 008214 336 -EGIQSSELIGCAQVRLC 352 (573)
Q Consensus 336 -~~~~~d~~lG~~~i~l~ 352 (573)
|..+.|+++|.+.+.|+
T Consensus 74 ~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred ccccCcccEEEEEEEEEC
Confidence 45678999998888875
No 187
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.55 E-value=3.6e-14 Score=122.30 Aligned_cols=100 Identities=28% Similarity=0.392 Sum_probs=85.7
Q ss_pred EEEEeecCCCCCCCCCCCcEEEEEEcCcc-----eeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCC----C
Q 008214 453 TVILAENLPASDLMGKADPYVVLTMKKSE-----TRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT----F 523 (573)
Q Consensus 453 ~v~~a~~L~~~~~~~~~dpyv~v~l~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~----~ 523 (573)
..++|++|+..+..|.+||||++++.+.. ..++|++++++.||+|||+|.|.+.....+.|.|+|||++. .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 35889999999988999999999997532 35899999999999999999998765556789999999986 5
Q ss_pred CC-ceeEEEEEEcceeeecCeEeEEEEcCC
Q 008214 524 GK-DYMGRCILTLTRVILEGEYTDCFELDG 552 (573)
Q Consensus 524 ~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~ 552 (573)
++ ++||++.++++++..+.....|++|.+
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 44 799999999999998877788999943
No 188
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.55 E-value=8.6e-14 Score=120.63 Aligned_cols=111 Identities=30% Similarity=0.463 Sum_probs=90.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-c
Q 008214 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-D 526 (573)
Q Consensus 448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d 526 (573)
..|.|+|.+|+ |...+..+.+||||++++++. ..++|++++++.||.|||.|.|.+.. .+.|.|+|||++..+. +
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~-~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~ 77 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQ-PPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADV 77 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCc-ccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCc
Confidence 36899999998 555555788999999999752 47899999999999999999999863 5789999999998755 6
Q ss_pred eeEEEEEEcceeeecCe-----EeEEEEcCC------CCCeEEEEEE
Q 008214 527 YMGRCILTLTRVILEGE-----YTDCFELDG------TKSGKLKLHL 562 (573)
Q Consensus 527 ~lG~~~i~l~~l~~~~~-----~~~~~~L~~------~~~G~i~l~l 562 (573)
+||++.++|.++..... ...|++|.. ...|+|.+++
T Consensus 78 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 78 LLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 99999999999886532 346888842 2378888875
No 189
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.53 E-value=1.6e-13 Score=119.81 Aligned_cols=113 Identities=27% Similarity=0.434 Sum_probs=93.1
Q ss_pred EEEEEEEEeecCCCCC--CCCCCCcEEEEEEcC----cceeEeecccCCCC-CCeeeeEEEEEeccCCCCEEEEEEEeCC
Q 008214 449 VLSVTVILAENLPASD--LMGKADPYVVLTMKK----SETRNKTRVVNDCL-NPIWNQTFDFVVEDGLHDMLIAEVWDHD 521 (573)
Q Consensus 449 ~L~V~v~~a~~L~~~~--~~~~~dpyv~v~l~~----~~~~~kT~~~~~t~-nP~wne~f~f~v~~~~~~~L~i~V~d~~ 521 (573)
.|+|+|++|+||+..+ ..+.+||||++++.+ ...+++|+++.++. ||.|||+|.|.+..+....|.++|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999887 578899999999953 23568999987776 9999999999998766678999999998
Q ss_pred CCCCceeEEEEEEcceeeecCeEeEEEEcCC-----CCCeEEEEEEEE
Q 008214 522 TFGKDYMGRCILTLTRVILEGEYTDCFELDG-----TKSGKLKLHLKW 564 (573)
Q Consensus 522 ~~~~d~lG~~~i~l~~l~~~~~~~~~~~L~~-----~~~G~i~l~l~~ 564 (573)
..++++||++.++++++..+ ..|++|.+ ...|.|.+++++
T Consensus 83 ~~~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 SGDDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCCCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 87557999999999998433 46788853 246888888875
No 190
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.3e-13 Score=143.00 Aligned_cols=123 Identities=36% Similarity=0.523 Sum_probs=105.4
Q ss_pred eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC-cceeEeecccCCCCCCeeeeEEEEEecc--CCCCEEEEEEEeCCC
Q 008214 446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHDT 522 (573)
Q Consensus 446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~V~d~~~ 522 (573)
....|.|+|.+|++|+..+..|.+||||++++.. ...+.+|++.++|+||.|||+|.|.|.. .....|.++|||.|.
T Consensus 165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr 244 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR 244 (421)
T ss_pred cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence 3578999999999999999777899999999964 3468899999999999999999999752 356799999999999
Q ss_pred CCC-ceeEEEEEEcceeeecCeEeEEEEcCCC------CCeEEEEEEEEEecC
Q 008214 523 FGK-DYMGRCILTLTRVILEGEYTDCFELDGT------KSGKLKLHLKWMPQP 568 (573)
Q Consensus 523 ~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~------~~G~i~l~l~~~p~~ 568 (573)
+++ +++|.+.++|..+........|.+|... ..|+|.+.++|.|..
T Consensus 245 fsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~ 297 (421)
T KOG1028|consen 245 FSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTA 297 (421)
T ss_pred cccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCC
Confidence 977 7999999999988776667889998542 247999999999873
No 191
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.52 E-value=2.2e-13 Score=113.96 Aligned_cols=105 Identities=24% Similarity=0.380 Sum_probs=79.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEcCc---ceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCC-----
Q 008214 450 LSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD----- 521 (573)
Q Consensus 450 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~----- 521 (573)
|.|+|++|+||+ +.+||||+++++.. ..+.||+++++|.||+|||+|+|.+.. ...|.+.|||++
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 579999999995 45899999998642 357899999999999999999999973 679999999983
Q ss_pred --CCCC-ceeEEEEEEcc--eeeecCeEeEEEEcCCCCCeEEEEEEEE
Q 008214 522 --TFGK-DYMGRCILTLT--RVILEGEYTDCFELDGTKSGKLKLHLKW 564 (573)
Q Consensus 522 --~~~~-d~lG~~~i~l~--~l~~~~~~~~~~~L~~~~~G~i~l~l~~ 564 (573)
..+. +.+|++.+.|+ .+...+..+..+.|.+ =+|.++++|
T Consensus 74 ~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~~---~~~~~s~~~ 118 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVISMNG---ITVNLSIKF 118 (118)
T ss_pred ccccCcccEEEEEEEEECHHHhccCCeeEEEEEecC---EEEEEEEeC
Confidence 3344 68977777664 4444455566677766 245555554
No 192
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.51 E-value=4.8e-14 Score=165.39 Aligned_cols=121 Identities=14% Similarity=0.294 Sum_probs=103.8
Q ss_pred CcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCC-CcEEEEEEEeCCC
Q 008214 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES-TQHLVVRIYDDEG 337 (573)
Q Consensus 259 ~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~-~~~l~i~v~d~~~ 337 (573)
.-.|.|+|+|++|+||. +..|.+||||++.+++ +++.||++++++.||+|||+|+|.+.++. ++.+.++|||+|.
T Consensus 1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~--~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN--GPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred hCCcceEEEEeeccccc--cccCCCCCeEEEEECC--CCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence 35799999999999998 4468999999999983 33678999999999999999999998875 4679999999999
Q ss_pred CCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeE---EEEEEEEee
Q 008214 338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQ---VHLELLYCP 390 (573)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~---i~l~l~~~p 390 (573)
++ ++.+|.++|++.++..++....||+|.+ +++..|+ |++++.|.+
T Consensus 2053 f~-kd~~G~~~i~l~~vv~~~~~~~~~~L~~------~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2053 FG-KSSLGKVTIQIDRVVMEGTYSGEYSLNP------ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred cC-CCCCceEEEEHHHHhcCceeeeeeecCc------ccccCCCcceEEEEEEecC
Confidence 85 5599999999999999999999999963 3345666 999999853
No 193
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.51 E-value=1.3e-13 Score=117.01 Aligned_cols=90 Identities=27% Similarity=0.459 Sum_probs=76.5
Q ss_pred EEEeeeccCCCCCCCCCcEEEEEEecCC---CCeEEeeeeCCCCCceeccEEEEEEecCC----CcEEEEEEEeCCCCCC
Q 008214 268 LVQAKGLTNKDLIGKSDPYAVLFVRPLP---EKTKKSKTINNDLNPIWNEHFEFIVEDES----TQHLVVRIYDDEGIQS 340 (573)
Q Consensus 268 v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~~~~T~~~~~~~nP~w~e~f~f~v~~~~----~~~l~i~v~d~~~~~~ 340 (573)
.++|++|+..|..|.+||||++++.+.. ...++|++++++.||+|| +|.|.+.+.. .+.|.|+|||++..++
T Consensus 6 ~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~ 84 (110)
T cd04047 6 QFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGK 84 (110)
T ss_pred EEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCC
Confidence 4689999999999999999999987432 235899999999999999 6888765432 5689999999999999
Q ss_pred CCceEEEEEEccccCCCc
Q 008214 341 SELIGCAQVRLCELEPGK 358 (573)
Q Consensus 341 d~~lG~~~i~l~~l~~~~ 358 (573)
|++||++.++++++..+.
T Consensus 85 d~~iG~~~~~l~~l~~~~ 102 (110)
T cd04047 85 HDLIGEFETTLDELLKSS 102 (110)
T ss_pred CcEEEEEEEEHHHHhcCC
Confidence 999999999999997544
No 194
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.46 E-value=3.7e-13 Score=108.13 Aligned_cols=85 Identities=35% Similarity=0.596 Sum_probs=76.6
Q ss_pred EEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCCc
Q 008214 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (573)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~ 343 (573)
|+|+|++|++|+..+..+..|||+++++.......++|+++.++.+|.|+|+|.|.+.....+.|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 78999999999998888899999999998544466999999999999999999999887777789999999999888999
Q ss_pred eEEEE
Q 008214 344 IGCAQ 348 (573)
Q Consensus 344 lG~~~ 348 (573)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99873
No 195
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.41 E-value=1.7e-12 Score=110.08 Aligned_cols=88 Identities=26% Similarity=0.498 Sum_probs=74.2
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEEcCc----ceeEeecccCCCCCCeeeeEEEEEeccC----CCCEEEEEEEeCCCC
Q 008214 452 VTVILAENLPASDLMGKADPYVVLTMKKS----ETRNKTRVVNDCLNPIWNQTFDFVVEDG----LHDMLIAEVWDHDTF 523 (573)
Q Consensus 452 V~v~~a~~L~~~~~~~~~dpyv~v~l~~~----~~~~kT~~~~~t~nP~wne~f~f~v~~~----~~~~L~i~V~d~~~~ 523 (573)
+..++|++|+..+..|.+||||++++.+. ...++|++++++.||+|| .|.|.+... ....|.|+|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 34679999999999999999999998643 246899999999999999 688876532 256899999999988
Q ss_pred CC-ceeEEEEEEcceeee
Q 008214 524 GK-DYMGRCILTLTRVIL 540 (573)
Q Consensus 524 ~~-d~lG~~~i~l~~l~~ 540 (573)
++ ++||++.++++++..
T Consensus 83 ~~d~~iG~~~~~l~~l~~ 100 (110)
T cd04047 83 GKHDLIGEFETTLDELLK 100 (110)
T ss_pred CCCcEEEEEEEEHHHHhc
Confidence 65 699999999999973
No 196
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.38 E-value=4e-12 Score=102.06 Aligned_cols=83 Identities=46% Similarity=0.802 Sum_probs=74.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEcCcc-eeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-ce
Q 008214 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSE-TRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DY 527 (573)
Q Consensus 450 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~-~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d~ 527 (573)
|+|+|++|+||+..+..+.+|||+++.+++.. ..++|++++++.+|.|+|+|.|.+..+..+.|.|+|||++..+. ++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 78999999999998888899999999997633 46899999999999999999999887777789999999999875 69
Q ss_pred eEEEE
Q 008214 528 MGRCI 532 (573)
Q Consensus 528 lG~~~ 532 (573)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99873
No 197
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=9.7e-13 Score=134.26 Aligned_cols=114 Identities=32% Similarity=0.656 Sum_probs=97.2
Q ss_pred ceeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCC-
Q 008214 445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF- 523 (573)
Q Consensus 445 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~- 523 (573)
..++.++++|.+|.+|..+|..|++||||.+.++. .+.+|+++...+||+|||.|.|.+.+ ..+.|.+.|||++..
T Consensus 292 kwsakitltvlcaqgl~akdktg~sdpyvt~qv~k--tkrrtrti~~~lnpvw~ekfhfechn-stdrikvrvwded~dl 368 (1283)
T KOG1011|consen 292 KWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGK--TKRRTRTIHQELNPVWNEKFHFECHN-STDRIKVRVWDEDNDL 368 (1283)
T ss_pred ccceeeEEeeeecccceecccCCCCCCcEEEeecc--cchhhHhhhhccchhhhhheeeeecC-CCceeEEEEecCcccH
Confidence 45789999999999999999999999999999986 78899999999999999999999997 478899999998742
Q ss_pred -----------CCceeEEEEEEcceeeecCeEeEEEEcCCC-----CCeEEEEEEE
Q 008214 524 -----------GKDYMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLK 563 (573)
Q Consensus 524 -----------~~d~lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~i~l~l~ 563 (573)
++||||+..|.+..+ .++++-||+|+.. -+|.|++.+.
T Consensus 369 ksklrqkl~resddflgqtvievrtl--sgemdvwynlekrtdksavsgairlhis 422 (1283)
T KOG1011|consen 369 KSKLRQKLTRESDDFLGQTVIEVRTL--SGEMDVWYNLEKRTDKSAVSGAIRLHIS 422 (1283)
T ss_pred HHHHHHHhhhcccccccceeEEEEec--ccchhhhcchhhccchhhccceEEEEEE
Confidence 357999999988875 4678999999753 3676666443
No 198
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=1.8e-12 Score=132.31 Aligned_cols=121 Identities=31% Similarity=0.592 Sum_probs=101.8
Q ss_pred cceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCC-
Q 008214 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI- 338 (573)
Q Consensus 260 ~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~- 338 (573)
=...++++|+.|.+|..+|..|++||||.+.++ +.+.+|+++..++||+|||.|.|..++. ++.+.++|||.|..
T Consensus 293 wsakitltvlcaqgl~akdktg~sdpyvt~qv~---ktkrrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~dl 368 (1283)
T KOG1011|consen 293 WSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVG---KTKRRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDNDL 368 (1283)
T ss_pred cceeeEEeeeecccceecccCCCCCCcEEEeec---ccchhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCcccH
Confidence 357899999999999999999999999999997 6778999999999999999999999964 67999999998842
Q ss_pred ----------CCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEe
Q 008214 339 ----------QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (573)
Q Consensus 339 ----------~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (573)
..|+|+|+..|.+..|.. ..+.|+.|.+... +...+|.|++.+...
T Consensus 369 ksklrqkl~resddflgqtvievrtlsg--emdvwynlekrtd---ksavsgairlhisve 424 (1283)
T KOG1011|consen 369 KSKLRQKLTRESDDFLGQTVIEVRTLSG--EMDVWYNLEKRTD---KSAVSGAIRLHISVE 424 (1283)
T ss_pred HHHHHHHhhhcccccccceeEEEEeccc--chhhhcchhhccc---hhhccceEEEEEEEE
Confidence 468999999999987754 4679999976543 456778777666554
No 199
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.30 E-value=1.5e-11 Score=105.87 Aligned_cols=95 Identities=21% Similarity=0.357 Sum_probs=80.1
Q ss_pred EEEEEEEeeeccCCC--CCC--CCCcEEEEEEecCCCCeEEeeeeCCCCC--ceeccEEEEEEecC--------------
Q 008214 264 LEVKLVQAKGLTNKD--LIG--KSDPYAVLFVRPLPEKTKKSKTINNDLN--PIWNEHFEFIVEDE-------------- 323 (573)
Q Consensus 264 L~V~v~~a~~L~~~d--~~g--~~dpyv~v~~~~~~~~~~~T~~~~~~~n--P~w~e~f~f~v~~~-------------- 323 (573)
|+|.|.+|++++..+ ..| .+||||+..+.+....+++|.+.++++| |.||+.|.|.+..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 789999999966433 356 4999999999865566789999999999 99999999887641
Q ss_pred ---------CCcEEEEEEEeCCCCCCCCceEEEEEEccccCCCc
Q 008214 324 ---------STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGK 358 (573)
Q Consensus 324 ---------~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~ 358 (573)
....|.++|||.|.+++|++||.++++|..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 24579999999999999999999999999887654
No 200
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.28 E-value=3.8e-11 Score=99.33 Aligned_cols=96 Identities=38% Similarity=0.655 Sum_probs=82.2
Q ss_pred EEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCCc
Q 008214 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (573)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~ 343 (573)
|.|+|++|++|......+..+|||++++.+.+...++|+++.++.||.|||+|.|.+.....+.|.++|||.+..+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 67999999999987755678999999998322257899999999999999999999987657899999999998777999
Q ss_pred eEEEEEEccccCCCce
Q 008214 344 IGCAQVRLCELEPGKV 359 (573)
Q Consensus 344 lG~~~i~l~~l~~~~~ 359 (573)
+|.+.+++.++..+..
T Consensus 82 ~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 82 IGQVTIPLSDLLLGGR 97 (101)
T ss_pred eEEEEEEHHHcccCcc
Confidence 9999999998876543
No 201
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.26 E-value=4.3e-11 Score=98.76 Aligned_cols=101 Identities=39% Similarity=0.725 Sum_probs=86.4
Q ss_pred EEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCCc
Q 008214 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (573)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~ 343 (573)
|.|+|++|++|......+..+|||.+.+.. ...++|.++.++.||.|++.|.|.+.......+.++|||.+..+.+++
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~--~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 78 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG--KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF 78 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc--CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCce
Confidence 468999999998766667899999999973 367899999999999999999999986456789999999998877899
Q ss_pred eEEEEEEccccC-CCceeEEEEEe
Q 008214 344 IGCAQVRLCELE-PGKVKDVWLKL 366 (573)
Q Consensus 344 lG~~~i~l~~l~-~~~~~~~w~~L 366 (573)
+|.+.+++.++. .......|++|
T Consensus 79 ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 79 LGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred eEEEEEeHHHhhhcCCcCcceecC
Confidence 999999999987 55666677653
No 202
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.24 E-value=4.8e-11 Score=102.83 Aligned_cols=93 Identities=27% Similarity=0.382 Sum_probs=77.7
Q ss_pred EEEEEEEeecCCCC--CCCCC--CCcEEEEEEcCc-ceeEeecccCCCCC--CeeeeEEEEEeccC--------------
Q 008214 450 LSVTVILAENLPAS--DLMGK--ADPYVVLTMKKS-ETRNKTRVVNDCLN--PIWNQTFDFVVEDG-------------- 508 (573)
Q Consensus 450 L~V~v~~a~~L~~~--~~~~~--~dpyv~v~l~~~-~~~~kT~~~~~t~n--P~wne~f~f~v~~~-------------- 508 (573)
|+|.|.+|++++.. +..|. +||||++.+.+. ..+++|.+.+++.| |.||+.|.|++..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 78999999997653 33564 999999999764 57899999999999 99999999987641
Q ss_pred ---------CCCEEEEEEEeCCCCCC-ceeEEEEEEcceeeecC
Q 008214 509 ---------LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEG 542 (573)
Q Consensus 509 ---------~~~~L~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~ 542 (573)
....|.++|||.|.++. |+||.++++|..+....
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 24589999999999875 79999999999887553
No 203
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.23 E-value=3.9e-12 Score=136.53 Aligned_cols=91 Identities=31% Similarity=0.491 Sum_probs=82.4
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-
Q 008214 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK- 525 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~- 525 (573)
...++|++.+|-+|...|.+|..|||+.+.++++...-+...+.+|.||+|++.|++.+..+....+.++|||+|..+.
T Consensus 612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d 691 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQD 691 (1105)
T ss_pred eeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccccc
Confidence 4568899999999999999999999999999986556788889999999999999999998888899999999999875
Q ss_pred ceeEEEEEEcce
Q 008214 526 DYMGRCILTLTR 537 (573)
Q Consensus 526 d~lG~~~i~l~~ 537 (573)
+.+|...++|+.
T Consensus 692 ~~iget~iDLEn 703 (1105)
T KOG1326|consen 692 EKIGETTIDLEN 703 (1105)
T ss_pred chhhceehhhhh
Confidence 699999999875
No 204
>PLN02223 phosphoinositide phospholipase C
Probab=99.20 E-value=2.5e-10 Score=118.63 Aligned_cols=104 Identities=25% Similarity=0.343 Sum_probs=85.7
Q ss_pred ceEEEEEEEEeeeccC-----CCCCCCCCcEEEEEEec--CCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEE
Q 008214 261 VGTLEVKLVQAKGLTN-----KDLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY 333 (573)
Q Consensus 261 ~G~L~V~v~~a~~L~~-----~d~~g~~dpyv~v~~~~--~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~ 333 (573)
...|.|+|+.|.+++. .+.....||||+|.+.+ .+...++|++..|+.||+|||+|.|.+..++-..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 4679999999998751 12234679999999973 3344677888899999999999999999888888999999
Q ss_pred eCCCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (573)
Q Consensus 334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 367 (573)
|+|....|+++|++.+|+..|..|- .+++|.
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~ 518 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGI---RAVPLY 518 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCc---eeEecc
Confidence 9998888999999999999998876 445664
No 205
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.19 E-value=1.6e-10 Score=95.38 Aligned_cols=100 Identities=46% Similarity=0.761 Sum_probs=85.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-cee
Q 008214 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYM 528 (573)
Q Consensus 450 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d~l 528 (573)
|.|.|++|+++......+..||||.+++.+ ...++|+++.++.||.||+.|.|.+.......|.|+||+.+..+. .++
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~-~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~i 79 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG-KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFL 79 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc-CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCcee
Confidence 468999999998876677899999999975 467899999999999999999999986456789999999988764 699
Q ss_pred EEEEEEcceee-ecCeEeEEEEc
Q 008214 529 GRCILTLTRVI-LEGEYTDCFEL 550 (573)
Q Consensus 529 G~~~i~l~~l~-~~~~~~~~~~L 550 (573)
|++.+++.++. ......+|++|
T Consensus 80 g~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 80 GEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEEeHHHhhhcCCcCcceecC
Confidence 99999999998 55566788765
No 206
>PLN02270 phospholipase D alpha
Probab=99.18 E-value=2.1e-10 Score=124.01 Aligned_cols=123 Identities=19% Similarity=0.376 Sum_probs=104.2
Q ss_pred ceeeEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEEcCcceeEeecccCCC-CCCeeeeEEEEEe
Q 008214 445 IIRGVLSVTVILAENLPASD------------------LMGKADPYVVLTMKKSETRNKTRVVNDC-LNPIWNQTFDFVV 505 (573)
Q Consensus 445 ~~~~~L~V~v~~a~~L~~~~------------------~~~~~dpyv~v~l~~~~~~~kT~~~~~t-~nP~wne~f~f~v 505 (573)
..-|.|.++|++|++|++.+ ..+.+||||.+.+++ .+..||+++.+. .||.|||.|.++|
T Consensus 5 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~-a~v~rtr~~~~~~~~p~w~e~f~i~~ 83 (808)
T PLN02270 5 LLHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEK-ARVGRTRKIENEPKNPRWYESFHIYC 83 (808)
T ss_pred eeecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCC-cEEEEEeecCCCCCCCccccceEEee
Confidence 34589999999999998631 124679999999985 578899999885 6999999999999
Q ss_pred ccCCCCEEEEEEEeCCCCCCceeEEEEEEcceeeecCeEeEEEEcCCC------CCeEEEEEEEEEecCC
Q 008214 506 EDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGT------KSGKLKLHLKWMPQPI 569 (573)
Q Consensus 506 ~~~~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~L~~~------~~G~i~l~l~~~p~~~ 569 (573)
.... ..++|.|.|.+.++..+||.+.||..+++.+...+.||++.+. +..+|+++++|.|...
T Consensus 84 ah~~-~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~ 152 (808)
T PLN02270 84 AHMA-SNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTK 152 (808)
T ss_pred ccCc-ceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence 9754 6799999999999889999999999999999889999998542 2459999999998654
No 207
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.17 E-value=2.4e-10 Score=94.44 Aligned_cols=94 Identities=41% Similarity=0.793 Sum_probs=80.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEcCc-ceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCC-ce
Q 008214 450 LSVTVILAENLPASDLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DY 527 (573)
Q Consensus 450 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~-~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~-d~ 527 (573)
+.+.|++|++|......+..+|||++++... ....+|+++.++.||.|||.|.|.+..+....|.|+|||.+..+. .+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 6789999999998776567899999999753 147899999999999999999999987657899999999987754 69
Q ss_pred eEEEEEEcceeeecCe
Q 008214 528 MGRCILTLTRVILEGE 543 (573)
Q Consensus 528 lG~~~i~l~~l~~~~~ 543 (573)
+|.+.+++.++..+..
T Consensus 82 ~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 82 IGQVTIPLSDLLLGGR 97 (101)
T ss_pred eEEEEEEHHHcccCcc
Confidence 9999999999876544
No 208
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=99.15 E-value=2e-10 Score=93.01 Aligned_cols=85 Identities=22% Similarity=0.357 Sum_probs=72.9
Q ss_pred HHHHHhhCh-hh-HHHHHHHHHHhHHHHHhh-hCCCccceEEEeEEecCCCCceEeEEEEEEc-CCCeEEEEEeeEEecC
Q 008214 75 NHHLEKLWP-YV-NEAASELIKSSVEPVLEQ-YRPFILSSLKFSKFTLGTVAPQFTGVSIIED-GGSGVTMELEMQWDAN 150 (573)
Q Consensus 75 N~~l~~~Wp-~~-~~~~~~~~~~~~~~~l~~-~~p~~l~~i~~~~~~lG~~pP~i~~i~~~~~-~~~~~~le~~~~~~~~ 150 (573)
|.+++|++- +. .+.+.+.+++.++..|++ .+|++++.|++++++||+.||.|+++++.+. .++++.+|+|+.|.|+
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G~ 80 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSGG 80 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcCC
Confidence 677777765 33 357899999999999998 4699999999999999999999999999865 4456999999999999
Q ss_pred cceEEEEee
Q 008214 151 SSIILAIKT 159 (573)
Q Consensus 151 ~~i~l~~~~ 159 (573)
..+.++++.
T Consensus 81 ~~l~l~t~l 89 (91)
T PF10296_consen 81 FSLTLETKL 89 (91)
T ss_pred eEEEEEEEE
Confidence 988888763
No 209
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.14 E-value=1.1e-10 Score=121.49 Aligned_cols=120 Identities=24% Similarity=0.347 Sum_probs=104.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCCce
Q 008214 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDY 527 (573)
Q Consensus 448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d~ 527 (573)
..|.|.|.+|+||++.+..|..||||.+.+.. +...||.++.+++.|.|.|.|.|.+.. .-..|.|-|||+|...++.
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~-E~v~RT~tv~ksL~PF~gEe~~~~iP~-~F~~l~fYv~D~d~~~D~~ 82 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQ-EEVCRTATVEKSLCPFFGEEFYFEIPR-TFRYLSFYVWDRDLKRDDI 82 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecc-hhhhhhhhhhhhcCCccccceEEecCc-ceeeEEEEEeccccccccc
Confidence 46889999999999999999999999999974 678999999999999999999999884 4568999999999434469
Q ss_pred eEEEEEEcceeeecCeEeEEEEcCCC-----CCeEEEEEEEEEecCC
Q 008214 528 MGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKWMPQPI 569 (573)
Q Consensus 528 lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~i~l~l~~~p~~~ 569 (573)
||.+.|.-.+|......+.||.|... -+|+|++++++.+.-.
T Consensus 83 IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~ 129 (800)
T KOG2059|consen 83 IGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQ 129 (800)
T ss_pred cceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccccC
Confidence 99999999999877777999999654 3899999999987644
No 210
>PLN02270 phospholipase D alpha
Probab=99.14 E-value=4.8e-10 Score=121.26 Aligned_cols=128 Identities=23% Similarity=0.429 Sum_probs=105.1
Q ss_pred ceEEEEEEEEeeeccCCC------------------CCCCCCcEEEEEEecCCCCeEEeeeeCCC-CCceeccEEEEEEe
Q 008214 261 VGTLEVKLVQAKGLTNKD------------------LIGKSDPYAVLFVRPLPEKTKKSKTINND-LNPIWNEHFEFIVE 321 (573)
Q Consensus 261 ~G~L~V~v~~a~~L~~~d------------------~~g~~dpyv~v~~~~~~~~~~~T~~~~~~-~nP~w~e~f~f~v~ 321 (573)
.|.|.|+|.+|++|++.+ ..+.+|||+.+.+. +.+..||+++.+. .||+|+|+|.+.+-
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~--~a~v~rtr~~~~~~~~p~w~e~f~i~~a 84 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLE--KARVGRTRKIENEPKNPRWYESFHIYCA 84 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeC--CcEEEEEeecCCCCCCCccccceEEeec
Confidence 599999999999998631 12467999999997 4678899999885 69999999999987
Q ss_pred cCCCcEEEEEEEeCCCCCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEeecCCC
Q 008214 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGME 394 (573)
Q Consensus 322 ~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~~ 394 (573)
... ..+.|.|.|.|.++ ..+||.+.+|+.++..+...+.|+++..... +..+....|+++++|.|....
T Consensus 85 h~~-~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~--~p~~~~~~~~~~~~f~~~~~~ 153 (808)
T PLN02270 85 HMA-SNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEVDRWVEILDNDK--NPIHGGSKIHVKLQYFEVTKD 153 (808)
T ss_pred cCc-ceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCccccEEeccCCCC--CcCCCCCEEEEEEEEEEcccC
Confidence 654 58999999999875 4699999999999999999999999975432 223344589999999997654
No 211
>PLN02952 phosphoinositide phospholipase C
Probab=99.11 E-value=1.1e-09 Score=116.39 Aligned_cols=105 Identities=24% Similarity=0.364 Sum_probs=86.8
Q ss_pred ceEEEEEEEEeeeccCC------CCCCCCCcEEEEEEec--CCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEE
Q 008214 261 VGTLEVKLVQAKGLTNK------DLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI 332 (573)
Q Consensus 261 ~G~L~V~v~~a~~L~~~------d~~g~~dpyv~v~~~~--~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v 332 (573)
...|.|+|+.|.+++.. +.....||||++.+.+ .+..+++|+++.++.||+|||+|.|.+..++-..++|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46899999999887531 1123459999999963 334567999999999999999999999988777899999
Q ss_pred EeCCCCCCCCceEEEEEEccccCCCceeEEEEEeee
Q 008214 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (573)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 368 (573)
||+|..+.++++|++.+|+..|..|- .|++|..
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~ 581 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHD 581 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcC
Confidence 99998888999999999999999876 4778853
No 212
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.06 E-value=3.7e-10 Score=121.62 Aligned_cols=89 Identities=29% Similarity=0.437 Sum_probs=79.6
Q ss_pred eEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCe--EEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCC
Q 008214 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339 (573)
Q Consensus 262 G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~--~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~ 339 (573)
-..+|.|++|-+|...|.+|.+|||+++.++ ++. -+...+.+++||+|.+.|.+....+....+.++|||+|..+
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lG---k~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~ 689 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLG---KKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA 689 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCCcCceeeeeec---cchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc
Confidence 3567999999999999999999999999997 333 56777899999999999999988887788999999999999
Q ss_pred CCCceEEEEEEccc
Q 008214 340 SSELIGCAQVRLCE 353 (573)
Q Consensus 340 ~d~~lG~~~i~l~~ 353 (573)
+|+.+|+..++|+.
T Consensus 690 ~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 690 QDEKIGETTIDLEN 703 (1105)
T ss_pred ccchhhceehhhhh
Confidence 99999999999875
No 213
>PLN02223 phosphoinositide phospholipase C
Probab=99.06 E-value=1.7e-09 Score=112.54 Aligned_cols=115 Identities=23% Similarity=0.356 Sum_probs=90.2
Q ss_pred eeEEEEEEEEeecCCCC-----CCCCCCCcEEEEEEcC---cceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEE
Q 008214 447 RGVLSVTVILAENLPAS-----DLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVW 518 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~-----~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~ 518 (573)
...|.|+|+.|.+++.. +....+||||+|.+.+ ...+++|.+..++.||+|||+|+|.+..|.-..|.|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 46899999999987521 2234689999999964 234567888788999999999999999888889999999
Q ss_pred eCCCCCC-ceeEEEEEEcceeeecCeEeEEEEcCCC-----CCeEEEEEEEE
Q 008214 519 DHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKW 564 (573)
Q Consensus 519 d~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~i~l~l~~ 564 (573)
|+|..++ +++|+..+|++.+..+- ++.+|.+. ..-.|.+.++|
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCCceEEEEEEe
Confidence 9998654 79999999999997654 45666432 24567777776
No 214
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.01 E-value=3.8e-09 Score=112.22 Aligned_cols=105 Identities=21% Similarity=0.279 Sum_probs=85.5
Q ss_pred ceEEEEEEEEeeeccCC------CCCCCCCcEEEEEEec--CCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEE
Q 008214 261 VGTLEVKLVQAKGLTNK------DLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI 332 (573)
Q Consensus 261 ~G~L~V~v~~a~~L~~~------d~~g~~dpyv~v~~~~--~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v 332 (573)
..+|.|+|+.+.+++.. +.....||||+|.+-. .+..+++|++..++.||+|||+|.|.+..++-..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 46899999999987421 2223469999999963 334457888889999999999999999988888999999
Q ss_pred EeCCCCCCCCceEEEEEEccccCCCceeEEEEEeee
Q 008214 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (573)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 368 (573)
+|+|...+|+++|++.+|+..|..|-. .++|..
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~ 580 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGIH---AVPLFN 580 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCccc---eEeccC
Confidence 999988899999999999999988753 445543
No 215
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.97 E-value=9.9e-09 Score=108.92 Aligned_cols=104 Identities=22% Similarity=0.281 Sum_probs=84.5
Q ss_pred ceEEEEEEEEeeecc----CC--CCCCCCCcEEEEEEec--CCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEE
Q 008214 261 VGTLEVKLVQAKGLT----NK--DLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI 332 (573)
Q Consensus 261 ~G~L~V~v~~a~~L~----~~--d~~g~~dpyv~v~~~~--~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v 332 (573)
...|+|+|+.+.++. .. +.....||||+|.+.+ .+..+++|+++.++.||+|||+|.|.+..++-..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 467999999998753 11 1223579999999963 344568999999999999999999999988888999999
Q ss_pred EeCCCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (573)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 367 (573)
+|+|....|+++|++.+|+..|..|-. .++|.
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR---~V~L~ 562 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGIR---AFPLH 562 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCccc---eEEcc
Confidence 999987889999999999999988753 44554
No 216
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.96 E-value=1.8e-10 Score=119.64 Aligned_cols=129 Identities=34% Similarity=0.607 Sum_probs=104.8
Q ss_pred cceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC----------------------------CeEEeeeeCCCCCce
Q 008214 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE----------------------------KTKKSKTINNDLNPI 311 (573)
Q Consensus 260 ~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~----------------------------~~~~T~~~~~~~nP~ 311 (573)
|.-.+.|.+.+|++|.++|.+|.+|||+...+.+... -.+-|++++.|+||+
T Consensus 112 P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPk 191 (1103)
T KOG1328|consen 112 PSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPK 191 (1103)
T ss_pred CcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcc
Confidence 4445677888999999999999999999987753110 024578889999999
Q ss_pred eccEEEEEEecCCCcEEEEEEEeCCCC---------------------------------CC---CCceEEEEEEccccC
Q 008214 312 WNEHFEFIVEDESTQHLVVRIYDDEGI---------------------------------QS---SELIGCAQVRLCELE 355 (573)
Q Consensus 312 w~e~f~f~v~~~~~~~l~i~v~d~~~~---------------------------------~~---d~~lG~~~i~l~~l~ 355 (573)
|+|.|.|.+.+..++.+.+.+||+|.- +. |||+|++.|||.++.
T Consensus 192 W~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP 271 (1103)
T KOG1328|consen 192 WSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIP 271 (1103)
T ss_pred hhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCC
Confidence 999999999999999999999998731 12 899999999999997
Q ss_pred CCceeEEEEEeeecccccCCCcceeEEEEEEEEeecC
Q 008214 356 PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFG 392 (573)
Q Consensus 356 ~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p~~ 392 (573)
... .+.||+|.+... ..+..|++++.+...-.+
T Consensus 272 ~~G-ld~WFkLepRS~---~S~VqG~~~LklwLsT~e 304 (1103)
T KOG1328|consen 272 PDG-LDQWFKLEPRSD---KSKVQGQVKLKLWLSTKE 304 (1103)
T ss_pred cch-HHHHhccCcccc---cccccceEEEEEEEeeec
Confidence 644 689999987643 568899999999876443
No 217
>PLN02228 Phosphoinositide phospholipase C
Probab=98.95 E-value=1.2e-08 Score=108.10 Aligned_cols=124 Identities=19% Similarity=0.247 Sum_probs=95.5
Q ss_pred ceEEEEEEEEeeeccC---C---CCCCCCCcEEEEEEec--CCCCeEEeeeeCCCCCcee-ccEEEEEEecCCCcEEEEE
Q 008214 261 VGTLEVKLVQAKGLTN---K---DLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIW-NEHFEFIVEDESTQHLVVR 331 (573)
Q Consensus 261 ~G~L~V~v~~a~~L~~---~---d~~g~~dpyv~v~~~~--~~~~~~~T~~~~~~~nP~w-~e~f~f~v~~~~~~~l~i~ 331 (573)
...|+|+|++|.+|+. . +.....||||+|.+.+ .+...++|++++++.||+| ||+|.|.+..++-..|+|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 3579999999998731 1 1123479999999963 3445689999999999999 9999999998887899999
Q ss_pred EEeCCCCCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEee
Q 008214 332 IYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (573)
Q Consensus 332 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p 390 (573)
|+|+|..+.|+++|++.+|+..|..|- ..++|.... ...-...+|.+.+.+.+
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~---G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSGV---RAVRLHDRA---GKAYKNTRLLVSFALDP 562 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCCe---eEEEccCCC---CCCCCCeEEEEEEEEcC
Confidence 999998888999999999999998765 345664322 12234567888887764
No 218
>PLN02228 Phosphoinositide phospholipase C
Probab=98.95 E-value=8.9e-09 Score=108.97 Aligned_cols=122 Identities=23% Similarity=0.325 Sum_probs=96.7
Q ss_pred eeEEEEEEEEeecCCC----C--CCCCCCCcEEEEEEcC---cceeEeecccCCCCCCee-eeEEEEEeccCCCCEEEEE
Q 008214 447 RGVLSVTVILAENLPA----S--DLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIW-NQTFDFVVEDGLHDMLIAE 516 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~----~--~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~w-ne~f~f~v~~~~~~~L~i~ 516 (573)
...|.|+|++|.+|+. . +....+||||++.+.+ ...+++|++++++.||+| ||+|+|.+..+.-..|.|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 4579999999998742 1 1223479999999854 234679999988899999 9999999998877899999
Q ss_pred EEeCCCCCC-ceeEEEEEEcceeeecCeEeEEEEcC---CC--CCeEEEEEEEEEecCCCC
Q 008214 517 VWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELD---GT--KSGKLKLHLKWMPQPIYR 571 (573)
Q Consensus 517 V~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~---~~--~~G~i~l~l~~~p~~~~~ 571 (573)
|+|++..+. +++|+..||++.+..+-+ ..+|. |. ....|.+.+.+.+.++||
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~~~G~~l~~atLfv~~~~~~~~~~~ 567 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHDRAGKAYKNTRLLVSFALDPPYTFR 567 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCCee---EEEccCCCCCCCCCeEEEEEEEEcCccccC
Confidence 999986644 799999999999965533 45663 32 357899999999999987
No 219
>PLN02952 phosphoinositide phospholipase C
Probab=98.93 E-value=1.1e-08 Score=109.05 Aligned_cols=115 Identities=23% Similarity=0.372 Sum_probs=88.7
Q ss_pred eeEEEEEEEEeecCCCC------CCCCCCCcEEEEEEcC---cceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEE
Q 008214 447 RGVLSVTVILAENLPAS------DLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEV 517 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~------~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V 517 (573)
...|.|+|+.|.+++.. +....+||||++.+.+ ...+++|+++.++.||+|||+|+|.+..+.-..+.|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46799999999987532 1223469999999954 23567999999999999999999999987778899999
Q ss_pred EeCCCCCC-ceeEEEEEEcceeeecCeEeEEEEcC---CCCCe--EEEEEEEE
Q 008214 518 WDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELD---GTKSG--KLKLHLKW 564 (573)
Q Consensus 518 ~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~---~~~~G--~i~l~l~~ 564 (573)
+|+|..++ +++|+..+|++.+..+- +|++|. |..-+ .+.+.+.|
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCCCCEEEEEEEEe
Confidence 99987654 79999999999997654 488885 33333 44445544
No 220
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.92 E-value=8.8e-09 Score=106.26 Aligned_cols=182 Identities=24% Similarity=0.347 Sum_probs=132.3
Q ss_pred eEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCC----CCCCceEEEEEEccccCCCceeEEEEEeeeccccc
Q 008214 298 TKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI----QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ 373 (573)
Q Consensus 298 ~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~----~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~ 373 (573)
..+|.++.+.+||.|.+.|.+.......|.+++.++|.+.. ...+++|++.+.+..+........-+.+. .
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~-----~ 116 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLK-----P 116 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcc-----c
Confidence 45899999999999999998888877889999999997743 45789999999999886543222212221 1
Q ss_pred CCCcceeEEEEEEEEeecCCCCCccCCCCCCCChhhHHHHhccCcccccCCCCCcchhhhchhhhccccccceeeEEEEE
Q 008214 374 RDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVT 453 (573)
Q Consensus 374 ~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~ 453 (573)
......|+|.+..+-. ........-
T Consensus 117 ~~~~~~g~iti~aee~-------------------------------------------------------~~~~~~~~~ 141 (529)
T KOG1327|consen 117 GKNAGSGTITISAEED-------------------------------------------------------ESDNDVVQF 141 (529)
T ss_pred CccCCcccEEEEeecc-------------------------------------------------------cccCceeee
Confidence 1334556666655321 001122233
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEEc--C--cceeEeecccCCCCCCeeeeEEEEEecc----CCCCEEEEEEEeCCCCCC
Q 008214 454 VILAENLPASDLMGKADPYVVLTMK--K--SETRNKTRVVNDCLNPIWNQTFDFVVED----GLHDMLIAEVWDHDTFGK 525 (573)
Q Consensus 454 v~~a~~L~~~~~~~~~dpyv~v~l~--~--~~~~~kT~~~~~t~nP~wne~f~f~v~~----~~~~~L~i~V~d~~~~~~ 525 (573)
..+|++|..++..+++|||..++-. . ....++|.+++++++|.|.. |...... ..+..+.+.+||.+..++
T Consensus 142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence 5669999999999999999998863 2 12468999999999999995 4444332 134688999999998877
Q ss_pred -ceeEEEEEEcceeee
Q 008214 526 -DYMGRCILTLTRVIL 540 (573)
Q Consensus 526 -d~lG~~~i~l~~l~~ 540 (573)
+++|.+..+++++..
T Consensus 221 ~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 221 HDLIGKFQTTLSELQE 236 (529)
T ss_pred cCceeEecccHHHhcc
Confidence 799999999988753
No 221
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.92 E-value=3.5e-09 Score=85.44 Aligned_cols=86 Identities=22% Similarity=0.330 Sum_probs=71.0
Q ss_pred EEEEEEEeecCCCCC---CCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCCc
Q 008214 450 LSVTVILAENLPASD---LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD 526 (573)
Q Consensus 450 L~V~v~~a~~L~~~~---~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d 526 (573)
|.|+|+.|+|+.... ..+.+||||.+.+++ ..+.||++ +.||.|||.|.|.+. ....+.+.|||+.....-
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved-~~kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~~~~~ 74 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVED-VERARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGGDQPV 74 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECC-EEEEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCCCeec
Confidence 578999999998776 577899999999986 34778875 589999999999995 467899999998653223
Q ss_pred eeEEEEEEcceeeec
Q 008214 527 YMGRCILTLTRVILE 541 (573)
Q Consensus 527 ~lG~~~i~l~~l~~~ 541 (573)
.+|..-+.|++|..+
T Consensus 75 Pi~llW~~~sdi~Ee 89 (109)
T cd08689 75 PVGLLWLRLSDIAEE 89 (109)
T ss_pred ceeeehhhHHHHHHH
Confidence 799999999998754
No 222
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.91 E-value=7.8e-09 Score=109.73 Aligned_cols=121 Identities=22% Similarity=0.342 Sum_probs=93.4
Q ss_pred EEEEEEEEeeeccCCCC----CCCCCcEEEEEEec--CCCCeEEee-eeCCCCCceeccEEEEEEecCCCcEEEEEEEeC
Q 008214 263 TLEVKLVQAKGLTNKDL----IGKSDPYAVLFVRP--LPEKTKKSK-TINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD 335 (573)
Q Consensus 263 ~L~V~v~~a~~L~~~d~----~g~~dpyv~v~~~~--~~~~~~~T~-~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~ 335 (573)
+|.|+|+++.++..... ...+||||.|.+.+ .+....+|+ +..|+-||.|+|+|+|.+..++-..|+|+|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 69999999997664321 24579999999863 333467888 568899999999999999999988999999999
Q ss_pred CCCCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEe
Q 008214 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (573)
Q Consensus 336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (573)
|..++|+|+|+..+|+..|..|-.+ ++|... ....-...+|.+.+.+.
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRh---VpL~~~---~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRH---VPLLSR---EGEALSSASLFVRIAIV 744 (746)
T ss_pred CCCCcccccceeeccHHHhhCceee---eeecCC---CCccccceeEEEEEEEe
Confidence 9999999999999999999887533 455422 12333455666666654
No 223
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.88 E-value=6.1e-09 Score=84.06 Aligned_cols=84 Identities=24% Similarity=0.442 Sum_probs=69.8
Q ss_pred EEEEEEEeeeccCCC---CCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCC
Q 008214 264 LEVKLVQAKGLTNKD---LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 340 (573)
Q Consensus 264 L~V~v~~a~~L~~~d---~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~ 340 (573)
|.|+|.+|+|+...+ ..+.+||||.++++ +.++.||++ +.||.|||+|.|.+. ....+.+.|||... ..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKve--d~~kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~-~~ 72 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVE--DVERARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGG-DQ 72 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEEC--CEEEEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCC-Ce
Confidence 578999999999877 56789999999997 244777876 479999999999995 46799999999865 45
Q ss_pred CCceEEEEEEccccC
Q 008214 341 SELIGCAQVRLCELE 355 (573)
Q Consensus 341 d~~lG~~~i~l~~l~ 355 (573)
.-.+|...+.+++|.
T Consensus 73 ~~Pi~llW~~~sdi~ 87 (109)
T cd08689 73 PVPVGLLWLRLSDIA 87 (109)
T ss_pred ecceeeehhhHHHHH
Confidence 678999888888874
No 224
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.85 E-value=2.1e-08 Score=106.69 Aligned_cols=115 Identities=23% Similarity=0.360 Sum_probs=89.3
Q ss_pred eeEEEEEEEEeecCCCC------CCCCCCCcEEEEEEcC---cceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEE
Q 008214 447 RGVLSVTVILAENLPAS------DLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEV 517 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~------~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V 517 (573)
...|.|+|+.|.+++.. +....+||||+|.+.+ ...+++|++..++.||+|||+|+|.+..|.-..|.|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 46799999999987532 2233579999999954 23467889888999999999999999988888999999
Q ss_pred EeCCCCC-CceeEEEEEEcceeeecCeEeEEEEcCCC-----CCeEEEEEEEE
Q 008214 518 WDHDTFG-KDYMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKW 564 (573)
Q Consensus 518 ~d~~~~~-~d~lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~i~l~l~~ 564 (573)
+|++..+ ++++|+..||++.+..+-+ ..+|.+. ..-.|.+.+.|
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGIH---AVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCccc---eEeccCCCcCCCCCCeeEEEEEe
Confidence 9998864 4799999999999876544 5566432 24567777766
No 225
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.80 E-value=5e-08 Score=103.63 Aligned_cols=115 Identities=23% Similarity=0.342 Sum_probs=88.7
Q ss_pred eeEEEEEEEEeecCCC----C--CCCCCCCcEEEEEEcC---cceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEE
Q 008214 447 RGVLSVTVILAENLPA----S--DLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEV 517 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~----~--~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V 517 (573)
...|.|+|+.|.+++. . +....+||||+|.+.+ ...+++|+++.++.||+|||+|+|.+..+.-..|.|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 4679999999987532 1 2234579999999953 23567999999999999999999999888778999999
Q ss_pred EeCCCCC-CceeEEEEEEcceeeecCeEeEEEEcCCC-----CCeEEEEEEEE
Q 008214 518 WDHDTFG-KDYMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKW 564 (573)
Q Consensus 518 ~d~~~~~-~d~lG~~~i~l~~l~~~~~~~~~~~L~~~-----~~G~i~l~l~~ 564 (573)
+|+|..+ ++++|+..+|++.+..+-+ ..+|.+. ....+.+.+.|
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR---~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGIR---AFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCccc---eEEccCCCcCCCCCeeEEEEEEe
Confidence 9998765 4799999999999875543 5566332 24567777766
No 226
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.76 E-value=3.6e-08 Score=103.97 Aligned_cols=124 Identities=19% Similarity=0.271 Sum_probs=92.5
Q ss_pred eEEEEEEEEeeeccCCCCCCCCCcEEEEEEec--CCCC-eEEeeeeCCCCCceec-cEEEEEEecCCCcEEEEEEEeCCC
Q 008214 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP--LPEK-TKKSKTINNDLNPIWN-EHFEFIVEDESTQHLVVRIYDDEG 337 (573)
Q Consensus 262 G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~-~~~T~~~~~~~nP~w~-e~f~f~v~~~~~~~l~i~v~d~~~ 337 (573)
-.|.|.|+.|++|+... .|-..|||.|.+.+ .+.. .++|.++.|++||+|| |.|+|.+.+|+-..|+|.|||.|-
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 46889999999999543 35567999999963 2233 4555567899999999 999999999998999999999999
Q ss_pred CCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEeecC
Q 008214 338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFG 392 (573)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p~~ 392 (573)
++...|||++.+|+..+..|-. -.+|.+.. .+.-.-..+.+.+...|..
T Consensus 1144 fs~~~FiaqA~yPv~~ik~GfR---sVpLkN~y---SEdlELaSLLv~i~m~~~~ 1192 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGFR---SVPLKNGY---SEDLELASLLVFIEMRPVL 1192 (1267)
T ss_pred cCCcceeeeeecchhhhhccce---eeecccCc---hhhhhhhhheeeeEecccc
Confidence 9888999999999999876532 23442211 1223345566666666643
No 227
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.76 E-value=4.2e-08 Score=104.28 Aligned_cols=118 Identities=22% Similarity=0.349 Sum_probs=90.9
Q ss_pred EEEEEEEEeecCCCCCC----CCCCCcEEEEEEcC---cceeEeec-ccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeC
Q 008214 449 VLSVTVILAENLPASDL----MGKADPYVVLTMKK---SETRNKTR-VVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDH 520 (573)
Q Consensus 449 ~L~V~v~~a~~L~~~~~----~~~~dpyv~v~l~~---~~~~~kT~-~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~ 520 (573)
.|.|.|+.|.+++.... ....||||.+.+.+ .....+|+ +..++-||.|+|+|+|.+..|.-.-|.|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 89999999997765322 24579999999854 34567899 456688999999999999999889999999999
Q ss_pred CCCC-CceeEEEEEEcceeeecCeEeEEEEcCCC--CCeEEEEEEEEEe
Q 008214 521 DTFG-KDYMGRCILTLTRVILEGEYTDCFELDGT--KSGKLKLHLKWMP 566 (573)
Q Consensus 521 ~~~~-~d~lG~~~i~l~~l~~~~~~~~~~~L~~~--~~G~i~l~l~~~p 566 (573)
+..+ +||+|+.++|++++..+-++-.=+..+|. ....|.+.+.|.+
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRhVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRHVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred CCCCcccccceeeccHHHhhCceeeeeecCCCCccccceeEEEEEEEec
Confidence 9987 47999999999999765443222222333 3678888888764
No 228
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.76 E-value=9.6e-09 Score=112.14 Aligned_cols=107 Identities=23% Similarity=0.302 Sum_probs=89.6
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC---cceeEeecccCCCCCCeeeeEEEEE---eccCCCCEEEEEEEeC
Q 008214 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFV---VEDGLHDMLIAEVWDH 520 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~wne~f~f~---v~~~~~~~L~i~V~d~ 520 (573)
.|.|+|.|.-|++|+.......+||||+.++.. +..+.||+++++|+||.|||...+. ........|+++||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 489999999999997765567899999999952 3467899999999999999998875 2233456899999998
Q ss_pred CCCCC-ceeEEEEEEcceeeecCeEeEEEEcCCC
Q 008214 521 DTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 553 (573)
Q Consensus 521 ~~~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~ 553 (573)
+.... .++|.+.|+|.++...++...||+|...
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred cceeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence 87755 5999999999999888887899999764
No 229
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.75 E-value=3.7e-08 Score=100.19 Aligned_cols=124 Identities=25% Similarity=0.440 Sum_probs=102.5
Q ss_pred eEEEEEEEEeeeccCCCCC-CCCCcEEEEEEecCCCCeEEeeeeCCCCCceec-cEEEEEEecC--CCcEEEEEEEeCCC
Q 008214 262 GTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN-EHFEFIVEDE--STQHLVVRIYDDEG 337 (573)
Q Consensus 262 G~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~-e~f~f~v~~~--~~~~l~i~v~d~~~ 337 (573)
|.|.|+|..|++|+-+|.. ...|.||.+.+. ...+||.+..+++||.|| +.|.|.|.+. ....|.+.+.|+|.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~---n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFA---NTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEec---ccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 7889999999999998865 467999999998 778999999999999998 5689998765 45689999999999
Q ss_pred CCCCCceEEEEEEccccCC----------CceeEEEEEeeecccccCCCcceeEEEEEEEEeecCC
Q 008214 338 IQSSELIGCAQVRLCELEP----------GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGM 393 (573)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~----------~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~ 393 (573)
.+.++-||.+.|+++.|.- +.....|+++.... ...+|+|.+-+..--+.+
T Consensus 80 ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-----hgirgeinvivkvdlfnd 140 (1169)
T KOG1031|consen 80 YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-----HGIRGEINVIVKVDLFND 140 (1169)
T ss_pred cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-----ccccceeEEEEEEeehhh
Confidence 9999999999999998732 34567899987543 357889888776554444
No 230
>PLN02352 phospholipase D epsilon
Probab=98.66 E-value=1.8e-07 Score=101.45 Aligned_cols=118 Identities=19% Similarity=0.329 Sum_probs=91.8
Q ss_pred ceeeEEEEEEEEeecCCCC----CC-CCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEe
Q 008214 445 IIRGVLSVTVILAENLPAS----DL-MGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWD 519 (573)
Q Consensus 445 ~~~~~L~V~v~~a~~L~~~----~~-~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d 519 (573)
..-|.|.++|.+|+-+... .. ....||||.+.+++ .+..|| .+..||.|+|.|.++|.......+.|.|.|
T Consensus 7 ~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~-~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~ 82 (758)
T PLN02352 7 FFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGN-KKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT 82 (758)
T ss_pred ccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCC-cEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec
Confidence 3458999999999843221 11 11239999999985 466677 556699999999999997765689999988
Q ss_pred CCCCCCceeEEEEEEcceeeecCe-EeEEEEcCCC-----CCeEEEEEEEEEecCCC
Q 008214 520 HDTFGKDYMGRCILTLTRVILEGE-YTDCFELDGT-----KSGKLKLHLKWMPQPIY 570 (573)
Q Consensus 520 ~~~~~~d~lG~~~i~l~~l~~~~~-~~~~~~L~~~-----~~G~i~l~l~~~p~~~~ 570 (573)
+..+||.+.||..+++.++. .+.||++.+. +..+|+++++|.|....
T Consensus 83 ----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 83 ----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAELE 135 (758)
T ss_pred ----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhhC
Confidence 35799999999999998866 8999998543 23599999999987654
No 231
>PLN02352 phospholipase D epsilon
Probab=98.61 E-value=3.6e-07 Score=99.19 Aligned_cols=122 Identities=14% Similarity=0.301 Sum_probs=92.7
Q ss_pred cceEEEEEEEEeeeccCC----CCC-CCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEe
Q 008214 260 PVGTLEVKLVQAKGLTNK----DLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYD 334 (573)
Q Consensus 260 ~~G~L~V~v~~a~~L~~~----d~~-g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d 334 (573)
-.|.|.++|.+|+-+... +.. ...|||+.+.++ +.+..|| .+..||+|+|+|.+.+-......+.|.|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~--~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~ 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIG--NKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeC--CcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec
Confidence 369999999999844321 111 123999999997 3556777 566799999999999876654579999988
Q ss_pred CCCCCCCCceEEEEEEccccCCCce-eEEEEEeeecccccCCCcceeEEEEEEEEeecCCC
Q 008214 335 DEGIQSSELIGCAQVRLCELEPGKV-KDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGME 394 (573)
Q Consensus 335 ~~~~~~d~~lG~~~i~l~~l~~~~~-~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~~ 394 (573)
...+||.+.+|+.++..+.. .+.|+++...... .... ..|+++++|.|....
T Consensus 83 -----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~--p~~~-~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 83 -----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGK--PNPE-LKLRFMLWFRPAELE 135 (758)
T ss_pred -----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCC--CCCC-CEEEEEEEEEEhhhC
Confidence 25799999999999988865 8999999765421 1122 599999999997654
No 232
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.60 E-value=1.6e-08 Score=105.40 Aligned_cols=96 Identities=31% Similarity=0.476 Sum_probs=81.8
Q ss_pred ceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCC----CCeEEeeeeCCCCCceeccEEEEEEecC----CCcEEEEEE
Q 008214 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDE----STQHLVVRI 332 (573)
Q Consensus 261 ~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~~~~~~~nP~w~e~f~f~v~~~----~~~~l~i~v 332 (573)
.-.|.|.|+.|+++.+-|.+|.+||||++.+.|.. -...+|+++.+|+||+|+|.|+|.|... ++..+.|.|
T Consensus 946 ~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTV 1025 (1103)
T KOG1328|consen 946 AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTV 1025 (1103)
T ss_pred ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEe
Confidence 44566777899999999999999999999998522 2357899999999999999999999743 345799999
Q ss_pred EeCCCCCCCCceEEEEEEccccCC
Q 008214 333 YDDEGIQSSELIGCAQVRLCELEP 356 (573)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~ 356 (573)
+|+|-...+||-|++.+.|+++..
T Consensus 1026 MDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1026 MDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred eccceecccccchHHHHhhCCCCC
Confidence 999999999999999999988753
No 233
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.58 E-value=1.6e-07 Score=99.21 Aligned_cols=102 Identities=25% Similarity=0.383 Sum_probs=82.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC----cceeEeecccCCCCCCeee-eEEEEEeccCCCCEEEEEEEeCCC
Q 008214 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKK----SETRNKTRVVNDCLNPIWN-QTFDFVVEDGLHDMLIAEVWDHDT 522 (573)
Q Consensus 448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~----~~~~~kT~~~~~t~nP~wn-e~f~f~v~~~~~~~L~i~V~d~~~ 522 (573)
-.|.|.|+.||.|+... .|-..|+|++.+-+ ....++|.++.++.||+|| |.|+|.|.+|.-..|.+.|+|.|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 47899999999999543 34567999999843 2234556667889999999 999999999999999999999999
Q ss_pred CCC-ceeEEEEEEcceeeecCeEeEEEEcCCC
Q 008214 523 FGK-DYMGRCILTLTRVILEGEYTDCFELDGT 553 (573)
Q Consensus 523 ~~~-d~lG~~~i~l~~l~~~~~~~~~~~L~~~ 553 (573)
+++ .|||++..|+..|..+- +..+|.+.
T Consensus 1144 fs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ 1172 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGF---RSVPLKNG 1172 (1267)
T ss_pred cCCcceeeeeecchhhhhccc---eeeecccC
Confidence 987 69999999999986542 34556544
No 234
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.53 E-value=2.1e-07 Score=94.78 Aligned_cols=114 Identities=31% Similarity=0.485 Sum_probs=93.7
Q ss_pred eEEEEEEEEeecCCCCCCCC-CCCcEEEEEEcCcceeEeecccCCCCCCeee-eEEEEEecc--CCCCEEEEEEEeCCCC
Q 008214 448 GVLSVTVILAENLPASDLMG-KADPYVVLTMKKSETRNKTRVVNDCLNPIWN-QTFDFVVED--GLHDMLIAEVWDHDTF 523 (573)
Q Consensus 448 ~~L~V~v~~a~~L~~~~~~~-~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wn-e~f~f~v~~--~~~~~L~i~V~d~~~~ 523 (573)
|.|-|.|..|++||.+|..+ ..|.||++.+.. ..+||.+..+++||.|| +=|.|.+.+ ..++.|+|.++|+|..
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n--~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN--TTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecc--cceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence 77899999999999988644 579999999976 78999999999999999 558888864 4667999999999998
Q ss_pred CC-ceeEEEEEEcceeeecC----------eEeEEEEcCCC---CCeEEEEEEE
Q 008214 524 GK-DYMGRCILTLTRVILEG----------EYTDCFELDGT---KSGKLKLHLK 563 (573)
Q Consensus 524 ~~-d~lG~~~i~l~~l~~~~----------~~~~~~~L~~~---~~G~i~l~l~ 563 (573)
+. |.||.+.|+++.+..++ -...||++-+. -+|+|.+-++
T Consensus 81 sandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivk 134 (1169)
T KOG1031|consen 81 SANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVK 134 (1169)
T ss_pred ccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEE
Confidence 75 89999999998876431 23789998653 3688876443
No 235
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.32 E-value=3.8e-07 Score=100.07 Aligned_cols=108 Identities=26% Similarity=0.407 Sum_probs=89.6
Q ss_pred cceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCC--eEEeeeeCCCCCceeccEEEEE---EecCCCcEEEEEEEe
Q 008214 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFI---VEDESTQHLVVRIYD 334 (573)
Q Consensus 260 ~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~~T~~~~~~~nP~w~e~f~f~---v~~~~~~~l~i~v~d 334 (573)
..|+|.|-|.-|++|.--.-...+||||+.|+.|...+ +.||+++++|.||.|||...+. ........|.+.||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 36889999999999965444567999999999875543 6789999999999999987655 222345689999999
Q ss_pred CCCCCCCCceEEEEEEccccCCCceeEEEEEee
Q 008214 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (573)
Q Consensus 335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 367 (573)
.+....+.++|.+.++|.++...+....|+.|.
T Consensus 1602 ~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred ccceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence 999999999999999999998777777999984
No 236
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.21 E-value=1.5e-06 Score=72.41 Aligned_cols=101 Identities=22% Similarity=0.381 Sum_probs=76.3
Q ss_pred EEEEEEEeecCCCCC-------------CCCCCCcEEEEEEc--CcceeEeecccCCCCCCeeeeEEEEEec--------
Q 008214 450 LSVTVILAENLPASD-------------LMGKADPYVVLTMK--KSETRNKTRVVNDCLNPIWNQTFDFVVE-------- 506 (573)
Q Consensus 450 L~V~v~~a~~L~~~~-------------~~~~~dpyv~v~l~--~~~~~~kT~~~~~t~nP~wne~f~f~v~-------- 506 (573)
|.|.|++|.+|.... ..-.-|+|+++.+. .+....+|+++.++-.|.|+..++|+|.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 467788888886421 01125899999963 3456789999999999999999999986
Q ss_pred c-------CCCCEEEEEEEeCCCCC----------Cc-eeEEEEEEcceeeec-CeEeEEEEc
Q 008214 507 D-------GLHDMLIAEVWDHDTFG----------KD-YMGRCILTLTRVILE-GEYTDCFEL 550 (573)
Q Consensus 507 ~-------~~~~~L~i~V~d~~~~~----------~d-~lG~~~i~l~~l~~~-~~~~~~~~L 550 (573)
. .....+.++||.+...+ +| .||.+.||+.+++.. .....||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 13458999999876431 35 799999999999876 456899975
No 237
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.20 E-value=5.7e-06 Score=85.86 Aligned_cols=87 Identities=30% Similarity=0.505 Sum_probs=70.4
Q ss_pred EEeeeccCCCCCCCCCcEEEEEEecCCC---CeEEeeeeCCCCCceeccEEEEEEecC----CCcEEEEEEEeCCCCCCC
Q 008214 269 VQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVEDE----STQHLVVRIYDDEGIQSS 341 (573)
Q Consensus 269 ~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~~T~~~~~~~nP~w~e~f~f~v~~~----~~~~l~i~v~d~~~~~~d 341 (573)
++|++|.++|..+++|||..++-...++ ..++|.+.++++||.|.+ |.+..... ....+.+.+||++..+++
T Consensus 143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~ 221 (529)
T KOG1327|consen 143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKH 221 (529)
T ss_pred eeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCc
Confidence 5689999999999999999887652122 258999999999999988 55554433 245788999999998889
Q ss_pred CceEEEEEEccccCC
Q 008214 342 ELIGCAQVRLCELEP 356 (573)
Q Consensus 342 ~~lG~~~i~l~~l~~ 356 (573)
+++|.+..++.++..
T Consensus 222 ~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 222 DLIGKFQTTLSELQE 236 (529)
T ss_pred CceeEecccHHHhcc
Confidence 999999999998864
No 238
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=6.2e-06 Score=79.49 Aligned_cols=103 Identities=24% Similarity=0.348 Sum_probs=80.6
Q ss_pred cceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCC--eEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEEeC
Q 008214 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDD 335 (573)
Q Consensus 260 ~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~d~ 335 (573)
....+.|++++|.+|..+|.+|.+|||+..++.+.-+. +++|++.+++.||+||++|.|.+... ....+.+.|||+
T Consensus 231 ~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~ 310 (362)
T KOG1013|consen 231 TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDY 310 (362)
T ss_pred CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeeccc
Confidence 45678899999999999999999999999999754333 57788889999999999999887632 456789999999
Q ss_pred CCCCCCCceEEEEEEccccCCCceeEEEE
Q 008214 336 EGIQSSELIGCAQVRLCELEPGKVKDVWL 364 (573)
Q Consensus 336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~ 364 (573)
+..+..+.+|-+...+ ...+.....|.
T Consensus 311 ~~G~s~d~~GG~~~g~--~rr~~v~~h~g 337 (362)
T KOG1013|consen 311 DIGKSNDSIGGSMLGG--YRRGEVHKHWG 337 (362)
T ss_pred CCCcCccCCCcccccc--cccchhhcCcc
Confidence 9877888998754433 33344444443
No 239
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=97.89 E-value=5.2e-05 Score=79.33 Aligned_cols=227 Identities=15% Similarity=0.244 Sum_probs=153.1
Q ss_pred CCCCceecCcc-------cchHHHHHHHHhhChh------hHHHHHHHHHHhHHHHHhhhC-CCccceEEEeEEecCCCC
Q 008214 58 FYPSWVVFSHR-------QKLTWLNHHLEKLWPY------VNEAASELIKSSVEPVLEQYR-PFILSSLKFSKFTLGTVA 123 (573)
Q Consensus 58 ~~p~w~~~~~~-------E~~~WlN~~l~~~Wp~------~~~~~~~~~~~~~~~~l~~~~-p~~l~~i~~~~~~lG~~p 123 (573)
..|.|+..... -.|-.+|.++..++.- +..++.+.+...++.++.... ...+..+.+.++-+|.+-
T Consensus 81 ~~~t~~~~~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elElg~~f 160 (1051)
T KOG3532|consen 81 ELRTFLKSGEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELELGTKF 160 (1051)
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhhcccc
Confidence 47788765321 2355566666666542 222333444444555555443 348999999999999999
Q ss_pred ceEeEEEEEEcC-------------------------CCeEEEEEeeEEecCcceEEEEeeeeceeeeEEEEEEEEEEEE
Q 008214 124 PQFTGVSIIEDG-------------------------GSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVF 178 (573)
Q Consensus 124 P~i~~i~~~~~~-------------------------~~~~~le~~~~~~~~~~i~l~~~~~~g~~~~v~v~~~~~~g~~ 178 (573)
|.+++.+++.-+ -..+.+-+|++|.|+.--++++....+..-.++|+..+++|.+
T Consensus 161 ~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l~Gm~ 240 (1051)
T KOG3532|consen 161 MTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKLTGMV 240 (1051)
T ss_pred ccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEeccce
Confidence 999999998511 1234567889999987666666666666777889999999999
Q ss_pred EEEeecCCcCCCeeeEEEEEecccceeeEEEEE--ccccccCCcchHHHHHHHHHHHHHhcccccceee--ecCCC----
Q 008214 179 RLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKV--VGGDISTIPGLSDSIEATIHDAIEDSITWPVRKI--VPILP---- 250 (573)
Q Consensus 179 rv~l~pl~~~~P~~~~~~~~f~~~p~l~f~~~~--~g~~~~~iP~l~~~~~~~i~~~i~~~~~~P~~~~--ipl~~---- 250 (573)
|+.+. .-|+ ..++++|...|.+....+. .|..+.. -|...+...++.++....+||++.. .|.-.
T Consensus 241 r~~~~----r~py-~hw~~sf~G~P~~e~di~s~~qg~qLQ~--~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~~~ 313 (1051)
T KOG3532|consen 241 RVILS----RQPY-HHWTFSFVGQPIFETDINSQIQGHQLQR--LIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNPIF 313 (1051)
T ss_pred eEEEE----eccc-eeeeeeeccCchhhhhhHHHHHHHHHHH--HhHHHHHHHHHHHHHhhccCcchhhhccccccCccc
Confidence 99886 4565 3589999999976655433 2222111 1344678888888899999999753 13221
Q ss_pred ----CCCcccccCcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEec
Q 008214 251 ----GDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP 293 (573)
Q Consensus 251 ----~~~~~~~~~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~ 293 (573)
...+.....+.|.+.|++.++..|.. ..++..-||.+.+.+
T Consensus 314 ~a~~~~~s~~~i~~~G~~~V~~lE~srL~~--~~k~~e~Yct~T~e~ 358 (1051)
T KOG3532|consen 314 QASPPINSFTHIKMEGGIEVTVLECSRLKD--KNKNYEVYCTVTIES 358 (1051)
T ss_pred ccCcchhhhhheeccCceeEeehhhhhhhc--cCCccceeeeccccC
Confidence 11122233678999999999988854 457788899988864
No 240
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.88 E-value=0.0015 Score=65.59 Aligned_cols=257 Identities=13% Similarity=0.131 Sum_probs=149.4
Q ss_pred EEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEec-------CCCcEEEEEEEeCC
Q 008214 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-------ESTQHLVVRIYDDE 336 (573)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~-------~~~~~l~i~v~d~~ 336 (573)
+.|+|++|++.+... ...-.+..++. +....|..+..+..|.||.+..+.+.. .....|++++|..+
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~n---g~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~ 75 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFN---GESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD 75 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeC---CceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence 578999999998652 23345566665 777888888899999999988887742 24568999999988
Q ss_pred -CCCCCCceEEEEEEcccc---CCC--ceeEEEEEeeecccccCCCcceeEEEEEEEEeecCCCCCccC-CC----CCCC
Q 008214 337 -GIQSSELIGCAQVRLCEL---EPG--KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTN-PF----APNF 405 (573)
Q Consensus 337 -~~~~d~~lG~~~i~l~~l---~~~--~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~~~-~~----~~~~ 405 (573)
..++.+.+|.+.++|... ..+ .....|++|..... +-.+..-+|.+.+........+.... .+ .+..
T Consensus 76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~--~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~ 153 (340)
T PF12416_consen 76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS--KYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPR 153 (340)
T ss_pred CCCCcceeccEEEEEccccccccccccccCCCeeEcccccc--ccccCCccEEEEEEEeccccccCCccccccccCCCcc
Confidence 557789999999999998 555 56789999975422 12223446666666654332111000 00 0000
Q ss_pred ChhhHHHHhccCcccccCCCCCcchhhhchh---hhccccccceeeEEEEEEEEeecCCCCC----C--CCCCCcEEEEE
Q 008214 406 SMTSLEKVLTNGEKALKSGANGTEAIELEKD---ASQKRREVIIRGVLSVTVILAENLPASD----L--MGKADPYVVLT 476 (573)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~L~V~v~~a~~L~~~~----~--~~~~dpyv~v~ 476 (573)
+. .... +....+..........+. .......-...-.|.|++..|+||...- . .+...-|...+
T Consensus 154 ~~----~~~~---~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~Ys 226 (340)
T PF12416_consen 154 QG----HVPP---PNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYS 226 (340)
T ss_pred cC----CCcc---cccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEE
Confidence 00 0000 000000000000000000 0000011134568999999999997641 1 12245566666
Q ss_pred EcCcceeEeecccCCCCCCeee-eEEE-EEeccC---------CCCEEEEEEEeCCCCCCceeEEEEEEcceeeec
Q 008214 477 MKKSETRNKTRVVNDCLNPIWN-QTFD-FVVEDG---------LHDMLIAEVWDHDTFGKDYMGRCILTLTRVILE 541 (573)
Q Consensus 477 l~~~~~~~kT~~~~~t~nP~wn-e~f~-f~v~~~---------~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~ 541 (573)
+-+ ....|...+...+|.|. +.-. +.+... ....|.|.++.. +..||.+.+++..++..
T Consensus 227 llG--n~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g----~~~Lg~~~v~l~~Ll~~ 296 (340)
T PF12416_consen 227 LLG--NDVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG----NQSLGSTSVPLQPLLPK 296 (340)
T ss_pred ecC--cEeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC----CcEEEEEEEEhhhccCC
Confidence 655 34456666777788775 3333 555421 224677777654 35899999999998754
No 241
>PLN02964 phosphatidylserine decarboxylase
Probab=97.87 E-value=2.2e-05 Score=84.91 Aligned_cols=88 Identities=17% Similarity=0.369 Sum_probs=74.4
Q ss_pred CcceEEEEEEEEeeeccCCCCCCCCCcEEE-EEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCC
Q 008214 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAV-LFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 337 (573)
Q Consensus 259 ~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~-v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~ 337 (573)
.-.|+..+++++|+ ++ ..|+|.. ++++ .+++||.+.++|.||+||+...|.|........++.|||.+.
T Consensus 51 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g---~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (644)
T PLN02964 51 DFSGIALLTLVGAE----MK---FKDKWLACVSFG---EQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR 120 (644)
T ss_pred cccCeEEEEeehhh----hc---cCCcEEEEEEec---ceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCC
Confidence 35799999999997 32 3588754 5555 889999999999999999999999987666678999999999
Q ss_pred CCCCCceEEEEEEccccCC
Q 008214 338 IQSSELIGCAQVRLCELEP 356 (573)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~ 356 (573)
++.++++|.|+++|.++..
T Consensus 121 ~s~n~lv~~~e~~~t~f~~ 139 (644)
T PLN02964 121 LSKNTLVGYCELDLFDFVT 139 (644)
T ss_pred CCHHHhhhheeecHhhccH
Confidence 9999999999998876643
No 242
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.82 E-value=1.6e-05 Score=61.44 Aligned_cols=98 Identities=20% Similarity=0.230 Sum_probs=69.8
Q ss_pred EEEEEEeeeccCCCCCC-CCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEec--CCCcEEEEEEEeCCCCCCC
Q 008214 265 EVKLVQAKGLTNKDLIG-KSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIYDDEGIQSS 341 (573)
Q Consensus 265 ~V~v~~a~~L~~~d~~g-~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~--~~~~~l~i~v~d~~~~~~d 341 (573)
.++|+.|++|.-....| .+.-|++--+.-.+...+||.+.+...||+|.|+|.|.+.- ...-.|.|.|+. ...+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 57899999998654333 34456654333223456889999999999999999998753 345578889988 45678
Q ss_pred CceEEEEEEccccCCCceeEEEEE
Q 008214 342 ELIGCAQVRLCELEPGKVKDVWLK 365 (573)
Q Consensus 342 ~~lG~~~i~l~~l~~~~~~~~w~~ 365 (573)
+.||.|.+.++++-..+ .++|..
T Consensus 80 e~iG~~sL~l~s~geeE-~~HW~e 102 (103)
T cd08684 80 RTIGECSLSLRTLSTQE-TDHWLE 102 (103)
T ss_pred ceeeEEEeecccCCHHH-hhhhhc
Confidence 99999999998874432 455643
No 243
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.75 E-value=2.7e-05 Score=60.23 Aligned_cols=96 Identities=19% Similarity=0.249 Sum_probs=68.3
Q ss_pred EEEEEeecCCCCCCCC-CCCcEEEEEEc-CcceeEeecccCCCCCCeeeeEEEEEec--cCCCCEEEEEEEeCCCCCCce
Q 008214 452 VTVILAENLPASDLMG-KADPYVVLTMK-KSETRNKTRVVNDCLNPIWNQTFDFVVE--DGLHDMLIAEVWDHDTFGKDY 527 (573)
Q Consensus 452 V~v~~a~~L~~~~~~~-~~dpyv~v~l~-~~~~~~kT~~~~~t~nP~wne~f~f~v~--~~~~~~L~i~V~d~~~~~~d~ 527 (573)
+++.+|++|.-....| .+.-|++--+. .+.-.+||.+..+..||+|.|+|.|.+. +...-.|.+.|+. ..-++..
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RKe~ 81 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRKRT 81 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCccce
Confidence 6788999997644333 34456663332 1235689999999999999999999876 3455689999998 3323479
Q ss_pred eEEEEEEcceeeecCeEeEEEE
Q 008214 528 MGRCILTLTRVILEGEYTDCFE 549 (573)
Q Consensus 528 lG~~~i~l~~l~~~~~~~~~~~ 549 (573)
||.+.++++++- .++..+|..
T Consensus 82 iG~~sL~l~s~g-eeE~~HW~e 102 (103)
T cd08684 82 IGECSLSLRTLS-TQETDHWLE 102 (103)
T ss_pred eeEEEeecccCC-HHHhhhhhc
Confidence 999999999863 334466654
No 244
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=8.9e-05 Score=72.95 Aligned_cols=108 Identities=22% Similarity=0.372 Sum_probs=83.5
Q ss_pred ceeeEEEEEEEEeecCCCCCC-CCCCCcEEEEEEcC---cceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeC
Q 008214 445 IIRGVLSVTVILAENLPASDL-MGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDH 520 (573)
Q Consensus 445 ~~~~~L~V~v~~a~~L~~~~~-~~~~dpyv~v~l~~---~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~ 520 (573)
...|.+.|.+++|++|..+.. ...++|||+|++-. ...+.+|+...+|.+|.|.+...|.-. +....|.+.||-.
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGTVWGD 344 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEEEecc
Confidence 457899999999999987543 23689999999843 234678999999999988887777655 4577899999953
Q ss_pred -CCCCC-ceeEEEEEEcceeeecC-eEeEEEEcCCC
Q 008214 521 -DTFGK-DYMGRCILTLTRVILEG-EYTDCFELDGT 553 (573)
Q Consensus 521 -~~~~~-d~lG~~~i~l~~l~~~~-~~~~~~~L~~~ 553 (573)
..... .|+|.++|-+.++-... ....||+|-+.
T Consensus 345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred ccccchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 33333 59999999999987655 56899999764
No 245
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.57 E-value=0.00018 Score=60.22 Aligned_cols=103 Identities=17% Similarity=0.382 Sum_probs=74.2
Q ss_pred EEEEEEEeeeccCC---------CCC----CCCCcEEEEEEec-CCCCeEEeeeeCCCCCceeccEEEEEEe--------
Q 008214 264 LEVKLVQAKGLTNK---------DLI----GKSDPYAVLFVRP-LPEKTKKSKTINNDLNPIWNEHFEFIVE-------- 321 (573)
Q Consensus 264 L~V~v~~a~~L~~~---------d~~----g~~dpyv~v~~~~-~~~~~~~T~~~~~~~nP~w~e~f~f~v~-------- 321 (573)
|.|.|++|.+|+.. ++. -.-++|+++.+.- .+++..+|+++.++-.|.|+.+++|.+.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 35777888877631 111 1248999998753 2356788999999999999999999875
Q ss_pred c-------CCCcEEEEEEEeCCC----------CCCCCceEEEEEEccccCC-CceeEEEEEe
Q 008214 322 D-------ESTQHLVVRIYDDEG----------IQSSELIGCAQVRLCELEP-GKVKDVWLKL 366 (573)
Q Consensus 322 ~-------~~~~~l~i~v~d~~~----------~~~d~~lG~~~i~l~~l~~-~~~~~~w~~L 366 (573)
+ .+...+.++||+... ..+|-+||.+.||+.+|.. ......|+++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 134578999999753 2356789999999999854 3456678763
No 246
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.39 E-value=0.00015 Score=71.91 Aligned_cols=120 Identities=18% Similarity=0.244 Sum_probs=94.1
Q ss_pred eeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEc---CcceeEeecccCCCCCCeeeeEEEEEeccC-----------CCC
Q 008214 446 IRGVLSVTVILAENLPASDLMGKADPYVVLTMK---KSETRNKTRVVNDCLNPIWNQTFDFVVEDG-----------LHD 511 (573)
Q Consensus 446 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~---~~~~~~kT~~~~~t~nP~wne~f~f~v~~~-----------~~~ 511 (573)
....|.+.|.++.+++........|.|+++.+- +...+.+|.++++|.+|.|+|.|...+... ...
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 345677888899888875433345789988873 344678999999999999999999998742 123
Q ss_pred EEEEEEEeCCCCCC--ceeEEEEEEcceeeecCeEeEEEEcCCC---CCeEEEEEEEEE
Q 008214 512 MLIAEVWDHDTFGK--DYMGRCILTLTRVILEGEYTDCFELDGT---KSGKLKLHLKWM 565 (573)
Q Consensus 512 ~L~i~V~d~~~~~~--d~lG~~~i~l~~l~~~~~~~~~~~L~~~---~~G~i~l~l~~~ 565 (573)
-+.|+|+.+..+-+ .++|.+.+.|..+...-++...|+|.+. -+|.+.+++..+
T Consensus 445 g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR 503 (523)
T ss_pred CeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence 68999999887743 4999999999998888888899998653 379999988875
No 247
>PLN02964 phosphatidylserine decarboxylase
Probab=97.23 E-value=0.00049 Score=74.76 Aligned_cols=88 Identities=19% Similarity=0.355 Sum_probs=72.0
Q ss_pred ceeeEEEEEEEEeecCCCCCCCCCCCcEEEE-EEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCC
Q 008214 445 IIRGVLSVTVILAENLPASDLMGKADPYVVL-TMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF 523 (573)
Q Consensus 445 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v-~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~ 523 (573)
.-+|+..+++.+|+ + ...|+|..+ ++| .+.+||.+.++|.||+||+...|.+........++.|||.+.+
T Consensus 51 ~~~~~~~~~~~~~~----~---~~~~~~~~~~~~g--~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (644)
T PLN02964 51 DFSGIALLTLVGAE----M---KFKDKWLACVSFG--EQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRL 121 (644)
T ss_pred cccCeEEEEeehhh----h---ccCCcEEEEEEec--ceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCC
Confidence 45789999999987 2 235887664 455 4899999999999999999999998865556679999999998
Q ss_pred CC-ceeEEEEEEcceeeec
Q 008214 524 GK-DYMGRCILTLTRVILE 541 (573)
Q Consensus 524 ~~-d~lG~~~i~l~~l~~~ 541 (573)
+. +++|.+.++|.++...
T Consensus 122 s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 122 SKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred CHHHhhhheeecHhhccHH
Confidence 76 6999999999887655
No 248
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.00034 Score=68.95 Aligned_cols=111 Identities=23% Similarity=0.368 Sum_probs=86.1
Q ss_pred CcceEEEEEEEEeeeccCCCC-CCCCCcEEEEEEecCCC--CeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEe-
Q 008214 259 KPVGTLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYD- 334 (573)
Q Consensus 259 ~~~G~L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d- 334 (573)
...|.+.|.|++|++|..+.- ...++|||+||+.+.+. -+.+|+...+|.+|.+.+...|.-. +....|.+.||.
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGTVWGD 344 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEEEecc
Confidence 467999999999999987542 23689999999985332 2467888889999888877666644 456689999885
Q ss_pred CCCCCCCCceEEEEEEccccCCCc-eeEEEEEeeecc
Q 008214 335 DEGIQSSELIGCAQVRLCELEPGK-VKDVWLKLVKDL 370 (573)
Q Consensus 335 ~~~~~~d~~lG~~~i~l~~l~~~~-~~~~w~~L~~~~ 370 (573)
+.+...+.|+|.+.+-+.+|.... ....|+++....
T Consensus 345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred ccccchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 556677899999999999996655 778999987543
No 249
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.03 E-value=0.00043 Score=68.80 Aligned_cols=124 Identities=17% Similarity=0.182 Sum_probs=91.7
Q ss_pred ceEEEEEEEEeeeccCCCCCCCCCcEEEEEEe--cCCCCeEEeeeeCCCCCceeccEEEEEEecC-----------CCcE
Q 008214 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVR--PLPEKTKKSKTINNDLNPIWNEHFEFIVEDE-----------STQH 327 (573)
Q Consensus 261 ~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~--~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~-----------~~~~ 327 (573)
.-.|.+.|+++.+++........|-|+++.+. ....++.+|.+++++.+|.|+|.|.+.+... ....
T Consensus 366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g 445 (523)
T KOG3837|consen 366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG 445 (523)
T ss_pred hhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence 34566777788777644322235778888774 2335678899999999999999999988651 1235
Q ss_pred EEEEEEeCCCC-CCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEe
Q 008214 328 LVVRIYDDEGI-QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (573)
Q Consensus 328 l~i~v~d~~~~-~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (573)
+.|++|+...+ ..|.++|.|.+.|..|.........++|. ...+...|.+.+.+...
T Consensus 446 ~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~-----DGRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 446 KKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLK-----DGRKAVGGKLEVKVRIR 503 (523)
T ss_pred eeEEEeeccccccccceeceeeeeehhhhcccchhhceecc-----ccccccCCeeEEEEEEe
Confidence 89999998765 56899999999999887776666777774 23556788998888874
No 250
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.88 E-value=0.012 Score=51.90 Aligned_cols=124 Identities=21% Similarity=0.260 Sum_probs=90.6
Q ss_pred ceeeEEEEEEEEeecCCCCC--CCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccC-------------C
Q 008214 445 IIRGVLSVTVILAENLPASD--LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG-------------L 509 (573)
Q Consensus 445 ~~~~~L~V~v~~a~~L~~~~--~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~-------------~ 509 (573)
.....|++.|..++-+-..- ..+..+.-..+++.-..++++|+.+..+.+|.|+|.|-|.+... .
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 34678999999987654321 11556666666664445899999999999999999999998633 1
Q ss_pred CCEEEEEEEeCCCCCC-ceeEEEEEEcceeeecCeE--eEEEEcCCC------CCeEEEEEEEEEecC
Q 008214 510 HDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEY--TDCFELDGT------KSGKLKLHLKWMPQP 568 (573)
Q Consensus 510 ~~~L~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~~--~~~~~L~~~------~~G~i~l~l~~~p~~ 568 (573)
.+.+++-|.-.+..++ .++|.-.+.-..++..+.. .....|.|. +.|-+.++++..|..
T Consensus 86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred CCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 3478888887776655 6899999999888877654 344445432 579999999988764
No 251
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=96.60 E-value=0.098 Score=46.12 Aligned_cols=122 Identities=20% Similarity=0.209 Sum_probs=82.7
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcce-eEeeccc-CCCCCCeeeeEEEEEecc---C-----CCCEEEEE
Q 008214 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSET-RNKTRVV-NDCLNPIWNQTFDFVVED---G-----LHDMLIAE 516 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~-~~kT~~~-~~t~nP~wne~f~f~v~~---~-----~~~~L~i~ 516 (573)
.-.+.+.+++..+++.. ...-|++...++... ..+|... .....-.|||.|.+.+.- . ....+.|.
T Consensus 6 kf~~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 46788999999999872 223344444443211 2333332 234567899999998751 1 23478899
Q ss_pred EEeCCCCCCc-eeEEEEEEcceeeec--CeEeEEEEcCCC--CCeEEEEEEEEEecCCCCC
Q 008214 517 VWDHDTFGKD-YMGRCILTLTRVILE--GEYTDCFELDGT--KSGKLKLHLKWMPQPIYRD 572 (573)
Q Consensus 517 V~d~~~~~~d-~lG~~~i~l~~l~~~--~~~~~~~~L~~~--~~G~i~l~l~~~p~~~~~~ 572 (573)
|+.....+.. .+|.+.|+|.++... ......++|.+. ....+++++++.+....++
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~~~~~ 142 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSELREDPD 142 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECccCCC
Confidence 9887544444 899999999999885 455788888765 4678999999988766554
No 252
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.55 E-value=0.03 Score=49.43 Aligned_cols=129 Identities=15% Similarity=0.153 Sum_probs=88.0
Q ss_pred cceEEEEEEEEeeeccCCCC--CCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCC-------------
Q 008214 260 PVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES------------- 324 (573)
Q Consensus 260 ~~G~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~------------- 324 (573)
..-.|.++|..++-....-. .+..+.-..+++. ..+|.++|+.+..+.+|.|+|.|-|.+....
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~-f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLH-FRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEE-ecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 34568888888776543211 1444555555543 3478999999999999999999999986442
Q ss_pred CcEEEEEEEeCCCCCCCCceEEEEEEccccCCCcee--EEEEEeeecccccCCCcceeEEEEEEEEeec
Q 008214 325 TQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK--DVWLKLVKDLDVQRDTKYRGQVHLELLYCPF 391 (573)
Q Consensus 325 ~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~--~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p~ 391 (573)
.+.+.+.|...|..+...++|+..+.-..+...+.. .....|.... ...+...|-+.++++..|.
T Consensus 86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~--~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVG--PESKVPVGILDLRLELLPN 152 (156)
T ss_pred CCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccC--CCCccceeEEEEEEEeecC
Confidence 346788888888776778999998888877554433 3333332211 2224588999999999873
No 253
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.00 E-value=0.015 Score=63.36 Aligned_cols=90 Identities=24% Similarity=0.445 Sum_probs=68.5
Q ss_pred ceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC----CeEEeeee-CCCCCceeccE-EEEE-EecCCCcEEEEEEE
Q 008214 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE----KTKKSKTI-NNDLNPIWNEH-FEFI-VEDESTQHLVVRIY 333 (573)
Q Consensus 261 ~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~----~~~~T~~~-~~~~nP~w~e~-f~f~-v~~~~~~~l~i~v~ 333 (573)
.+.+.|+|+++.-|..++ ...||.|.+-+.+. +.++|+++ .++.||+|+|+ |.|. |--+.-..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 578999999999998665 34799998853332 34677776 68899999975 6664 33345568999999
Q ss_pred eCCCCCCCCceEEEEEEccccCCCc
Q 008214 334 DDEGIQSSELIGCAQVRLCELEPGK 358 (573)
Q Consensus 334 d~~~~~~d~~lG~~~i~l~~l~~~~ 358 (573)
+.. ..+||+-.+|+..|..|-
T Consensus 778 eEg----gK~ig~RIlpvd~l~~GY 798 (1189)
T KOG1265|consen 778 EEG----GKFIGQRILPVDGLNAGY 798 (1189)
T ss_pred ccC----CceeeeeccchhcccCcc
Confidence 976 369999999999998764
No 254
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.99 E-value=0.098 Score=52.77 Aligned_cols=113 Identities=13% Similarity=0.189 Sum_probs=85.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEec-------cCCCCEEEEEEEeCCC
Q 008214 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVE-------DGLHDMLIAEVWDHDT 522 (573)
Q Consensus 450 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~-------~~~~~~L~i~V~d~~~ 522 (573)
+.|.|.+|++++... ...-.+..++++ ....|..+..+..|.||..+.+.+. ...+..|++++|..+.
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng--~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~ 76 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNG--ESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDG 76 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCC--ceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecC
Confidence 568899999998752 335678888877 6778889899999999999998875 2245689999998873
Q ss_pred C--CCceeEEEEEEccee---eec--CeEeEEEEcCCC------CCeEEEEEEEEEec
Q 008214 523 F--GKDYMGRCILTLTRV---ILE--GEYTDCFELDGT------KSGKLKLHLKWMPQ 567 (573)
Q Consensus 523 ~--~~d~lG~~~i~l~~l---~~~--~~~~~~~~L~~~------~~G~i~l~l~~~p~ 567 (573)
. .++.+|.+.++|... ..+ .....||+|-+. .+-+|.+.+.....
T Consensus 77 ~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~ 134 (340)
T PF12416_consen 77 STGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDD 134 (340)
T ss_pred CCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecc
Confidence 2 347999999999988 333 344789999765 35677777766543
No 255
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.45 E-value=0.11 Score=47.55 Aligned_cols=89 Identities=18% Similarity=0.193 Sum_probs=62.2
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcce----eEeecccCCCCCCeeeeEEEEEec--c-CCCCEEEEEEEeC
Q 008214 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE--D-GLHDMLIAEVWDH 520 (573)
Q Consensus 448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~----~~kT~~~~~t~nP~wne~f~f~v~--~-~~~~~L~i~V~d~ 520 (573)
..++|+++.+.++... ....+-||++.+-++.+ ...|+.+..+.++.|||.++|++. + |....|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 4688999999999862 23456788876632222 335655555678999999999764 3 4667999999986
Q ss_pred CCCC----------------C-ceeEEEEEEccee
Q 008214 521 DTFG----------------K-DYMGRCILTLTRV 538 (573)
Q Consensus 521 ~~~~----------------~-d~lG~~~i~l~~l 538 (573)
.... + ..||.+.++|-+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 4321 1 3799999999764
No 256
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.29 E-value=0.13 Score=46.04 Aligned_cols=87 Identities=16% Similarity=0.154 Sum_probs=61.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcce----eEeecccCCCCCCeeeeEEEEEec--c-CCCCEEEEEEEeC
Q 008214 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE--D-GLHDMLIAEVWDH 520 (573)
Q Consensus 448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~----~~kT~~~~~t~nP~wne~f~f~v~--~-~~~~~L~i~V~d~ 520 (573)
..++|+++++.++... ..+|-||++.+-++.+ ...|+.+.. .++.|||-.+|++. + |.+..|.|+||+.
T Consensus 8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 4688999999998764 3457899887743222 224444443 68999999999775 2 4667999999986
Q ss_pred CCCC----C-ceeEEEEEEccee
Q 008214 521 DTFG----K-DYMGRCILTLTRV 538 (573)
Q Consensus 521 ~~~~----~-d~lG~~~i~l~~l 538 (573)
.... . ..+|.++++|-+.
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECC
Confidence 5421 2 3699999999763
No 257
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=95.06 E-value=1.6 Score=38.27 Aligned_cols=121 Identities=13% Similarity=0.206 Sum_probs=74.2
Q ss_pred eEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeee-CCCCCceeccEEEEEEec--------CCCcEEEEEE
Q 008214 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI-NNDLNPIWNEHFEFIVED--------ESTQHLVVRI 332 (573)
Q Consensus 262 G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~-~~~~nP~w~e~f~f~v~~--------~~~~~l~i~v 332 (573)
=.+.++|.+..+++. ....-|++...+.......+|+.. ..+-.-.|||+|.+.+.- .....+.|.|
T Consensus 7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 356788888888875 122234444333111102334333 345567999999887642 1234688999
Q ss_pred EeCCCCCCCCceEEEEEEccccCCC--ceeEEEEEeeecccccCCCcceeEEEEEEEEeecC
Q 008214 333 YDDEGIQSSELIGCAQVRLCELEPG--KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFG 392 (573)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~--~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p~~ 392 (573)
+.....++...+|.+.++|.+.... .....-+.|.+ .......+++.+.+.+..
T Consensus 83 ~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~------~~~~~a~L~isi~~~~~~ 138 (143)
T PF10358_consen 83 FEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKK------CKKSNATLSISISLSELR 138 (143)
T ss_pred EEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCcc------CCCCCcEEEEEEEEEECc
Confidence 9875433346999999999998664 34445555532 235667888888887643
No 258
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.99 E-value=0.56 Score=42.05 Aligned_cols=89 Identities=17% Similarity=0.256 Sum_probs=59.3
Q ss_pred eEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCC---eEEeeeeCCCCCceeccEEEEEEe--cC-CCcEEEEEEEeC
Q 008214 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK---TKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDD 335 (573)
Q Consensus 262 G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~---~~~T~~~~~~~nP~w~e~f~f~v~--~~-~~~~l~i~v~d~ 335 (573)
..++|+|+++.++.-. ..+|-|+.+.+-..+.. ...|+.+.. .++.|||...|.+. +. ....|.|.+|+.
T Consensus 8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 4678999999998754 34678888766421111 123443333 67999999888764 32 456899999997
Q ss_pred CCCC----CCCceEEEEEEcccc
Q 008214 336 EGIQ----SSELIGCAQVRLCEL 354 (573)
Q Consensus 336 ~~~~----~d~~lG~~~i~l~~l 354 (573)
.... ....+|.+.++|-+-
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECC
Confidence 6421 224699999998763
No 259
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=94.52 E-value=0.091 Score=57.65 Aligned_cols=90 Identities=27% Similarity=0.384 Sum_probs=68.9
Q ss_pred ceeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcC-----cceeEeecccCC-CCCCeeee-EEEEE-eccCCCCEEEEE
Q 008214 445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKK-----SETRNKTRVVND-CLNPIWNQ-TFDFV-VEDGLHDMLIAE 516 (573)
Q Consensus 445 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~~~kT~~~~~-t~nP~wne-~f~f~-v~~~~~~~L~i~ 516 (573)
...+.+.|+|++|.-|..++. ..||.|.+.+ ..+.++|+++.+ +.||+|+| .|.|. |--|.-..|.|.
T Consensus 700 vIA~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRia 775 (1189)
T KOG1265|consen 700 VIAATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIA 775 (1189)
T ss_pred eEEeeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeee
Confidence 557899999999999976543 4899999854 124578887754 78999995 47774 334456789999
Q ss_pred EEeCCCCCCceeEEEEEEcceeeec
Q 008214 517 VWDHDTFGKDYMGRCILTLTRVILE 541 (573)
Q Consensus 517 V~d~~~~~~d~lG~~~i~l~~l~~~ 541 (573)
||+... .++|+-.+|+..+..+
T Consensus 776 vyeEgg---K~ig~RIlpvd~l~~G 797 (1189)
T KOG1265|consen 776 VYEEGG---KFIGQRILPVDGLNAG 797 (1189)
T ss_pred eeccCC---ceeeeeccchhcccCc
Confidence 999864 6999999999987544
No 260
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=94.50 E-value=0.33 Score=38.37 Aligned_cols=84 Identities=20% Similarity=0.200 Sum_probs=58.5
Q ss_pred CCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCCceeEEEEEEcceeeecCeEeEEE
Q 008214 469 ADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCF 548 (573)
Q Consensus 469 ~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~~~ 548 (573)
.+..+.+.+.+ ....+|.-. ...+..|++.|.+.+. .+..|+|.|+-+|. +.+.|...+.|.+.. +.+
T Consensus 9 ~eV~avLklDn-~~VgqT~Wk-~~s~q~WDQ~Fti~Ld--RsRELEI~VywrD~--RslCav~~lrLEd~~------~~~ 76 (98)
T cd08687 9 SEVSAVLKLDN-TVVGQTQWK-PKSNQAWDQSFTLELE--RSRELEIAVYWRDW--RSLCAVKFLKLEDER------HEV 76 (98)
T ss_pred cceEEEEEEcC-eEEeecccc-ccccccccceeEEEee--cccEEEEEEEEecc--hhhhhheeeEhhhhc------ccc
Confidence 56677777764 345566653 3468899999999987 36789999998875 457777778888731 123
Q ss_pred EcCCCCCeEEEEEEEE
Q 008214 549 ELDGTKSGKLKLHLKW 564 (573)
Q Consensus 549 ~L~~~~~G~i~l~l~~ 564 (573)
.+.-.++|.+..++.|
T Consensus 77 ~~~lepqg~l~~ev~f 92 (98)
T cd08687 77 QLDMEPQLCLVAELTF 92 (98)
T ss_pred eeccccccEEEEEEEe
Confidence 3333457888888877
No 261
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=94.41 E-value=0.28 Score=44.06 Aligned_cols=90 Identities=16% Similarity=0.103 Sum_probs=61.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcce----eEeecccCCCCCCeeeeEEEEEec---cCCCCEEEEEEEeC
Q 008214 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWDH 520 (573)
Q Consensus 448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~----~~kT~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~d~ 520 (573)
..++|.++...+.... .....+-||++.+-.+.+ ...|.....+.++.|||..+|++. -|.+..|.|.||+.
T Consensus 8 ~~~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 4577888888887651 123456777776632222 234444444478999999999864 24667999999997
Q ss_pred CCCC--C-ceeEEEEEEccee
Q 008214 521 DTFG--K-DYMGRCILTLTRV 538 (573)
Q Consensus 521 ~~~~--~-d~lG~~~i~l~~l 538 (573)
...+ + ..||.+.++|-+.
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred ecCCCCcceEEEEEeEEeEcc
Confidence 6554 2 4899999999774
No 262
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=94.22 E-value=0.2 Score=44.94 Aligned_cols=72 Identities=18% Similarity=0.199 Sum_probs=52.3
Q ss_pred CCCCcEEEEEEcCcce----eEeecccCCCCCCeeeeEEEEEec---cCCCCEEEEEEEeCCCCCC-ceeEEEEEEccee
Q 008214 467 GKADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 538 (573)
Q Consensus 467 ~~~dpyv~v~l~~~~~----~~kT~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~d~~~~~~-d~lG~~~i~l~~l 538 (573)
..+|-||++.+-.+.+ ...|+.+.-+..+.|||-.+|++. -|.+..|.|+|||....++ ..+|.++++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 3467788887743222 235666666778999999999875 2466799999999876544 4899999999764
No 263
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=93.41 E-value=0.47 Score=43.31 Aligned_cols=74 Identities=22% Similarity=0.281 Sum_probs=48.4
Q ss_pred eEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC---CeEEeeeeCCCCCceeccEEEEEEe--cC-CCcEEEEEEEeC
Q 008214 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDD 335 (573)
Q Consensus 262 G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~~T~~~~~~~nP~w~e~f~f~v~--~~-~~~~l~i~v~d~ 335 (573)
..++|+|+++.++... ....+-|+.+.+-..+. ....|+...-+.++.|||.+.|.+. +. ....|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 4678999999999752 23456677765532111 1234555444567999999888764 32 456899999997
Q ss_pred CC
Q 008214 336 EG 337 (573)
Q Consensus 336 ~~ 337 (573)
..
T Consensus 86 ~~ 87 (173)
T cd08693 86 SK 87 (173)
T ss_pred cc
Confidence 53
No 264
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=93.25 E-value=0.39 Score=43.80 Aligned_cols=92 Identities=17% Similarity=0.231 Sum_probs=64.6
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcce----eEeecccC----CCCCCeeeeEEEEEec---cCCCCEEEE
Q 008214 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSET----RNKTRVVN----DCLNPIWNQTFDFVVE---DGLHDMLIA 515 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~----~~kT~~~~----~t~nP~wne~f~f~v~---~~~~~~L~i 515 (573)
...+.|+|.++.+++........|-|+.+.+-.+.+ ...|+... -...+.|||-.+|.+. -|.+..|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 467889999999999876555678899887743222 22343221 1235779999999774 346679999
Q ss_pred EEEeCCCCC---------C-ceeEEEEEEccee
Q 008214 516 EVWDHDTFG---------K-DYMGRCILTLTRV 538 (573)
Q Consensus 516 ~V~d~~~~~---------~-d~lG~~~i~l~~l 538 (573)
.+|+....+ + ..||.+.++|-+.
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999865443 2 4899999999774
No 265
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=92.88 E-value=1.2 Score=35.35 Aligned_cols=86 Identities=21% Similarity=0.258 Sum_probs=58.7
Q ss_pred CCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCCceEEEEEEccccCCCcee
Q 008214 281 GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360 (573)
Q Consensus 281 g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~ 360 (573)
|.++-.+.+.+. .....+|..... .+..|++.|.+.+. ....|+|.||-.|- ..+-|...+.|++...+
T Consensus 7 ~~~eV~avLklD--n~~VgqT~Wk~~-s~q~WDQ~Fti~Ld--RsRELEI~VywrD~---RslCav~~lrLEd~~~~--- 75 (98)
T cd08687 7 GCSEVSAVLKLD--NTVVGQTQWKPK-SNQAWDQSFTLELE--RSRELEIAVYWRDW---RSLCAVKFLKLEDERHE--- 75 (98)
T ss_pred cccceEEEEEEc--CeEEeecccccc-ccccccceeEEEee--cccEEEEEEEEecc---hhhhhheeeEhhhhccc---
Confidence 336777888886 245666765433 47889999999987 35689999998764 35677777888773221
Q ss_pred EEEEEeeecccccCCCcceeEEEEEEEE
Q 008214 361 DVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (573)
Q Consensus 361 ~~w~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (573)
.-. .-.+.|.+..+++|
T Consensus 76 -~~~----------~lepqg~l~~ev~f 92 (98)
T cd08687 76 -VQL----------DMEPQLCLVAELTF 92 (98)
T ss_pred -cee----------ccccccEEEEEEEe
Confidence 111 33567888887776
No 266
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=92.82 E-value=0.7 Score=42.17 Aligned_cols=90 Identities=13% Similarity=0.176 Sum_probs=57.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcce---eEeecccCCCCCCeeeeEEEEEec--c-CCCCEEEEEEEeCC
Q 008214 448 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSET---RNKTRVVNDCLNPIWNQTFDFVVE--D-GLHDMLIAEVWDHD 521 (573)
Q Consensus 448 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~---~~kT~~~~~t~nP~wne~f~f~v~--~-~~~~~L~i~V~d~~ 521 (573)
..++|+|+++. .+..+......-||++.+-.+.. ..+|....-+.+|.|||-.+|++. + |....|.|.||+..
T Consensus 10 ~~friki~~~~-~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 10 RKFRVKILGID-IPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CCEEEEEEeec-ccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 35778888886 33333233334677765532222 235565556778999999999875 2 45679999999852
Q ss_pred CC---------------C-C-ceeEEEEEEccee
Q 008214 522 TF---------------G-K-DYMGRCILTLTRV 538 (573)
Q Consensus 522 ~~---------------~-~-d~lG~~~i~l~~l 538 (573)
.. + . ..||.+.+.|-+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~ 122 (178)
T cd08399 89 APALSSKKSAESPSSESKGKHQLLYYVNLLLIDH 122 (178)
T ss_pred cCcccccccccccccccccccceEEEEEEEEEcC
Confidence 11 1 1 3799999998763
No 267
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=92.64 E-value=0.71 Score=41.39 Aligned_cols=92 Identities=18% Similarity=0.214 Sum_probs=58.1
Q ss_pred eEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC---CeEEeeeeCCCCCceeccEEEEEEe--cC-CCcEEEEEEEeC
Q 008214 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDD 335 (573)
Q Consensus 262 G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~~T~~~~~~~nP~w~e~f~f~v~--~~-~~~~l~i~v~d~ 335 (573)
..++|++....++...+ ....+-|+.+.+-..+. ....|.......++.|||...|.+. +. ....|.|.+|+.
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 34677777777765411 23355666665532111 1233443333468999999888753 22 456899999998
Q ss_pred CCCC--CCCceEEEEEEcccc
Q 008214 336 EGIQ--SSELIGCAQVRLCEL 354 (573)
Q Consensus 336 ~~~~--~d~~lG~~~i~l~~l 354 (573)
+..+ .+..||.+.++|-+-
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred ecCCCCcceEEEEEeEEeEcc
Confidence 7543 468999999998663
No 268
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=92.47 E-value=0.28 Score=47.55 Aligned_cols=117 Identities=18% Similarity=0.158 Sum_probs=71.9
Q ss_pred cceEEEEEEEEeeeccCCCC--CCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCC
Q 008214 260 PVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 337 (573)
Q Consensus 260 ~~G~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~ 337 (573)
..|+|.++++.+++|.-... .-.-+-||++.... ....+|.+...+.-=.|.|+|..++.. ...+.+-||+++.
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~dr--qh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvySW~p 124 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDR--QHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYSWPP 124 (442)
T ss_pred ccceEEEEEecccccccChhccCceeeeeeeeeecc--cCccccccccCCCCccchhhceeeccc--ceeeeEEEeecCc
Confidence 57999999999999974322 23458899998751 223344444444445789999988874 3478899999987
Q ss_pred CCCCCceEEEEEEccccCCCceeEEEEEeeecccccCCCcceeEEEEEEEEe
Q 008214 338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (573)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (573)
..++++.-.-.+.+..+.... .+.-+.| .-.++|++.+.+.+.
T Consensus 125 q~RHKLC~~g~l~~~~v~rqs-pd~~~Al--------~lePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 125 QRRHKLCHLGLLEAFVVDRQS-PDRVVAL--------YLEPRGQPPLRLPLA 167 (442)
T ss_pred hhhccccccchhhhhhhhhcC-Ccceeee--------ecccCCCCceecccC
Confidence 666665433333333332111 1111222 235678888877654
No 269
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=91.59 E-value=2.6 Score=38.78 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=40.7
Q ss_pred eEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEEeCCCCC--CCCceEEEEEEcc
Q 008214 298 TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQ--SSELIGCAQVRLC 352 (573)
Q Consensus 298 ~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~d~~~~~--~d~~lG~~~i~l~ 352 (573)
.++|-+...+.+|.|+|++.+.+... ....|.|++++..... ....+|.+.+||-
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 57888899999999999998887643 4568999888754321 1256888777773
No 270
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=90.85 E-value=0.92 Score=40.75 Aligned_cols=74 Identities=18% Similarity=0.202 Sum_probs=50.2
Q ss_pred CCCCcEEEEEEecCCC---CeEEeeeeCCCCCceeccEEEEEEe--cC-CCcEEEEEEEeCCCCCCCCceEEEEEEcccc
Q 008214 281 GKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDDEGIQSSELIGCAQVRLCEL 354 (573)
Q Consensus 281 g~~dpyv~v~~~~~~~---~~~~T~~~~~~~nP~w~e~f~f~v~--~~-~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l 354 (573)
..+|-||.+.+-..+. ....|+.+.-+..+.|||...|.+. +. ....|.|.|||.+..+....+|.+.++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 3467777776642111 1234554555567889999888864 22 3568999999988655678999999998653
No 271
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=90.61 E-value=0.49 Score=45.96 Aligned_cols=113 Identities=18% Similarity=0.179 Sum_probs=72.2
Q ss_pred ceeeEEEEEEEEeecCCCCCC--CCCCCcEEEEEEcCcceeEeecccCCCCCC--eeeeEEEEEeccCCCCEEEEEEEeC
Q 008214 445 IIRGVLSVTVILAENLPASDL--MGKADPYVVLTMKKSETRNKTRVVNDCLNP--IWNQTFDFVVEDGLHDMLIAEVWDH 520 (573)
Q Consensus 445 ~~~~~L~V~v~~a~~L~~~~~--~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP--~wne~f~f~v~~~~~~~L~i~V~d~ 520 (573)
..+|+|.+++..+++|..... .-.-+-||.+.... .+++++...+.+| .|.|.|+..+-+ ...+.+-||.+
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~dr---qh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvySW 122 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDR---QHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYSW 122 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecc---cCccccccccCCCCccchhhceeeccc--ceeeeEEEeec
Confidence 457999999999999976432 33468899998763 3444444455555 677888887764 46788899988
Q ss_pred CCCCCc---eeEEEEEEcceeeecCeEeEEEEcCCCCCeEEEEEEEEE
Q 008214 521 DTFGKD---YMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWM 565 (573)
Q Consensus 521 ~~~~~d---~lG~~~i~l~~l~~~~~~~~~~~L~~~~~G~i~l~l~~~ 565 (573)
+...+. ..| .+.+..+..... ++-+.|.-.+.|++.+.+.+.
T Consensus 123 ~pq~RHKLC~~g--~l~~~~v~rqsp-d~~~Al~lePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 123 PPQRRHKLCHLG--LLEAFVVDRQSP-DRVVALYLEPRGQPPLRLPLA 167 (442)
T ss_pred Cchhhccccccc--hhhhhhhhhcCC-cceeeeecccCCCCceecccC
Confidence 865432 455 344444433222 344555545567777666553
No 272
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=90.59 E-value=4 Score=37.72 Aligned_cols=55 Identities=22% Similarity=0.235 Sum_probs=41.1
Q ss_pred eEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEEeCCCC-C---CCCceEEEEEEcc
Q 008214 298 TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGI-Q---SSELIGCAQVRLC 352 (573)
Q Consensus 298 ~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~d~~~~-~---~d~~lG~~~i~l~ 352 (573)
.++|-+...+.+|.|+|++.+.+... ....|.|.+++.... . ....+|.+.+||-
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 57888888899999999998887543 456899999885421 1 2356888888874
No 273
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=90.09 E-value=1.1 Score=40.93 Aligned_cols=92 Identities=16% Similarity=0.224 Sum_probs=59.4
Q ss_pred eEEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCC---CeEEeeeeC----CCCCceeccEEEEEEe--c-CCCcEEEEE
Q 008214 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTIN----NDLNPIWNEHFEFIVE--D-ESTQHLVVR 331 (573)
Q Consensus 262 G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~~T~~~~----~~~nP~w~e~f~f~v~--~-~~~~~l~i~ 331 (573)
..+.|+|.++.+++........|-|+.+.+-..+. ....|+... -...+.|||...|.+. + +....|.|.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 45789999999998655444577888876642111 112333211 1235779999888764 2 245689999
Q ss_pred EEeCCCCC---------CCCceEEEEEEccc
Q 008214 332 IYDDEGIQ---------SSELIGCAQVRLCE 353 (573)
Q Consensus 332 v~d~~~~~---------~d~~lG~~~i~l~~ 353 (573)
+|+....+ .+..||.+.++|-+
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEc
Confidence 99976543 35688888888765
No 274
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=89.47 E-value=1.9 Score=37.97 Aligned_cols=54 Identities=20% Similarity=0.194 Sum_probs=39.6
Q ss_pred eecccCCC-CCCeeeeEEEEEec---cCCCCEEEEEEEeCCCCCC-----ceeEEEEEEccee
Q 008214 485 KTRVVNDC-LNPIWNQTFDFVVE---DGLHDMLIAEVWDHDTFGK-----DYMGRCILTLTRV 538 (573)
Q Consensus 485 kT~~~~~t-~nP~wne~f~f~v~---~~~~~~L~i~V~d~~~~~~-----d~lG~~~i~l~~l 538 (573)
.|+...-+ .++.|||.++|++. -|.+..|.|.||+.+.... ..||.+.++|-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 56665555 79999999999874 3467799999998765443 4899999999775
No 275
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=88.59 E-value=2.7 Score=34.47 Aligned_cols=72 Identities=17% Similarity=0.209 Sum_probs=48.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEcCcce----eEeecccCCCCCCeeeeEEEEEec---cCCCCEEEEEEEeCC
Q 008214 450 LSVTVILAENLPASDLMGKADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWDHD 521 (573)
Q Consensus 450 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~----~~kT~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~d~~ 521 (573)
+.+.+..+++.........++-||++.+-++.+ ...|..+.-...+.|||-.+|++. -|.+..|.|.||+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 556677777776544333357888887743222 234555555667999999999765 346679999999864
No 276
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=87.94 E-value=5 Score=36.97 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=42.9
Q ss_pred eeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCCCCC--C-ceeEEEEEEcce
Q 008214 482 TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFG--K-DYMGRCILTLTR 537 (573)
Q Consensus 482 ~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~~~~--~-d~lG~~~i~l~~ 537 (573)
..++|.+...+.+|.|+|++.+.+... .+..|.++++...... . ..+|.+.++|-+
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 357888889999999999999988633 5568889887754432 2 479999999854
No 277
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=87.68 E-value=1.9 Score=39.83 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=34.4
Q ss_pred eEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEEeCCCCCC---CCceEEEEEEccc
Q 008214 298 TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQS---SELIGCAQVRLCE 353 (573)
Q Consensus 298 ~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~d~~~~~~---d~~lG~~~i~l~~ 353 (573)
.+.|.+..++.+|.|+|+|.+.+... ....|.|.+++.....+ +..+|.+.+||-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 46778888889999999999988654 45689999999764221 2689999999876
No 278
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=86.86 E-value=3.8 Score=37.47 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=42.4
Q ss_pred EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCC---eEEeeeeCCCCCceeccEEEEEEe--cC-CCcEEEEEEEeCC
Q 008214 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK---TKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDDE 336 (573)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~---~~~T~~~~~~~nP~w~e~f~f~v~--~~-~~~~l~i~v~d~~ 336 (573)
.++|+|.++..+ +.+......-||++.+-. +++ ..+|....-+.++.|||...|.+. +. ....|.|.||+..
T Consensus 11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~-g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQH-GQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeeccc-CcCCCCceEEEEEEEEEE-CCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 467788877633 222122223455554321 122 124555555678999998888764 32 4568999999974
No 279
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=85.02 E-value=10 Score=33.30 Aligned_cols=55 Identities=18% Similarity=0.388 Sum_probs=39.2
Q ss_pred EeeeeCCC-CCceeccEEEEEEe--c-CCCcEEEEEEEeCCCCCCC----CceEEEEEEcccc
Q 008214 300 KSKTINND-LNPIWNEHFEFIVE--D-ESTQHLVVRIYDDEGIQSS----ELIGCAQVRLCEL 354 (573)
Q Consensus 300 ~T~~~~~~-~nP~w~e~f~f~v~--~-~~~~~l~i~v~d~~~~~~d----~~lG~~~i~l~~l 354 (573)
.|+...-+ .++.|||...|.+. + +....|.|.||+.+....+ ..||.+.++|-+-
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 45555444 79999999888864 3 3466899999998765444 6899999998664
No 280
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=84.42 E-value=10 Score=35.06 Aligned_cols=55 Identities=13% Similarity=0.138 Sum_probs=42.3
Q ss_pred eeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCCCCC--C---ceeEEEEEEcc
Q 008214 482 TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFG--K---DYMGRCILTLT 536 (573)
Q Consensus 482 ~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~~~~--~---d~lG~~~i~l~ 536 (573)
..++|.+.....+|.|+|++.+.+... .+..|.++++...... + ..+|.+.++|-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 467888888999999999999988632 5668999998754321 1 36999999986
No 281
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=81.78 E-value=5.4 Score=36.78 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=35.1
Q ss_pred eeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCCCCC--C--ceeEEEEEEcce
Q 008214 482 TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFG--K--DYMGRCILTLTR 537 (573)
Q Consensus 482 ~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~~~~--~--d~lG~~~i~l~~ 537 (573)
..+.|.+...+.+|.|+|+|.+.+... .+..|.|++++..... + ..+|.+.++|.+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 456788888899999999999988744 4568999999866532 1 489999999987
No 282
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=81.11 E-value=30 Score=31.35 Aligned_cols=70 Identities=20% Similarity=0.336 Sum_probs=51.7
Q ss_pred CCCcEEEEEEecCCCCeEEeeeeC--CCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCCceEEEEEEccccC
Q 008214 282 KSDPYAVLFVRPLPEKTKKSKTIN--NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELE 355 (573)
Q Consensus 282 ~~dpyv~v~~~~~~~~~~~T~~~~--~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~ 355 (573)
+..-|+++.+. ++...+|+... .+..-.|+|.|.+.+... -..|.++||.... ..+..|+.+.+|+-...
T Consensus 36 ~~~~~ikl~~N--~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 36 KTRYYIKLFFN--DKEVSRTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSG-LSDRLLAEVFVPVPGST 107 (168)
T ss_pred heeEEEEEEEC--CEEEEeeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccC-ccceEEEEEEeeCCCCc
Confidence 34568888886 34566666543 333457789999998764 3589999999887 67899999999987653
No 283
>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only]
Probab=80.18 E-value=0.56 Score=51.30 Aligned_cols=89 Identities=16% Similarity=0.290 Sum_probs=72.7
Q ss_pred cchHHHHHHHHhhChhhHHH--HHHHHHHhHHHHHhhhC-CCccceEEEeEEecCCCCceEeEEEEEEc-CCCeEEEEEe
Q 008214 69 QKLTWLNHHLEKLWPYVNEA--ASELIKSSVEPVLEQYR-PFILSSLKFSKFTLGTVAPQFTGVSIIED-GGSGVTMELE 144 (573)
Q Consensus 69 E~~~WlN~~l~~~Wp~~~~~--~~~~~~~~~~~~l~~~~-p~~l~~i~~~~~~lG~~pP~i~~i~~~~~-~~~~~~le~~ 144 (573)
+.+-|||.++.++..-+.+. ..+..++.++.++...+ |+++..+-..+++-|..||.|++-++... ..+...++.|
T Consensus 334 ~~T~~ln~~~~rl~~~~k~~~~~~n~~~~r~q~~y~~~Rt~~~~eelv~~~vd~~nl~p~i~~~~~l~~~~~gv~~~~~d 413 (795)
T KOG2238|consen 334 EGTLALNAVLGRLFLDLKQPTDLKNSSHERIQRIYSKMRTPSYIEELVCRKVDTGNLPPLITSTRVLPVEMSGVWAFEID 413 (795)
T ss_pred hhhhhhhhhcchhhhcccCCccccchHHHHHHHHHhccccchhhhhhhhhhhhhcCCccccccceeEEeeccccccCccc
Confidence 45889999999998766554 66777888888888764 78999999999999999999999999877 3455578899
Q ss_pred eEEecCcceEEEE
Q 008214 145 MQWDANSSIILAI 157 (573)
Q Consensus 145 ~~~~~~~~i~l~~ 157 (573)
+.|.||..+.++.
T Consensus 414 i~y~~d~~~~i~~ 426 (795)
T KOG2238|consen 414 IEYRGDLTIIIET 426 (795)
T ss_pred eeecccccccccc
Confidence 9999987655554
No 284
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=79.77 E-value=4.3 Score=45.59 Aligned_cols=107 Identities=12% Similarity=0.245 Sum_probs=76.8
Q ss_pred CCcEEEEEEecCCCCeEEeeeeCCC-CCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCCceEEEEEEccccCCCceeE
Q 008214 283 SDPYAVLFVRPLPEKTKKSKTINND-LNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKD 361 (573)
Q Consensus 283 ~dpyv~v~~~~~~~~~~~T~~~~~~-~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~ 361 (573)
.++|+.+.+. .....+|....+. .+|.|++.|........ ..+.+.+-+.+..+....+|.+.++...+..+....
T Consensus 138 ~e~Ylt~~l~--~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~-g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~ 214 (887)
T KOG1329|consen 138 LENYLTVVLH--KARYRRTHVIYEFLENSRWSFSFDIGFAHKA-GYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIG 214 (887)
T ss_pred ccchheeeec--hhhhhchhhhhcccccchhhhhccccccccc-cEEEEeecCCccccceeEEEEeccchhhhhcccccc
Confidence 4888888886 2344566666666 79999999987776544 478888888887665789999999999999888888
Q ss_pred EEEEeeecccccCCCcceeEEEEEEEEeecCCC
Q 008214 362 VWLKLVKDLDVQRDTKYRGQVHLELLYCPFGME 394 (573)
Q Consensus 362 ~w~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~~ 394 (573)
.|+++..... +.....-.+.+.+.|.+....
T Consensus 215 ~~~~Il~~d~--~~~~~~~~~~~~~~~~~~~~~ 245 (887)
T KOG1329|consen 215 GWFPILDNDG--KPHQKGSNESLRLGFTPMEKD 245 (887)
T ss_pred ceeeeeccCC--ccccCCcccceEEeeEeechh
Confidence 9998864332 112223356666777776553
No 285
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=79.68 E-value=19 Score=33.06 Aligned_cols=56 Identities=14% Similarity=0.291 Sum_probs=39.6
Q ss_pred eEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEEeCCCC--C-------CCCceEEEEEEccc
Q 008214 298 TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGI--Q-------SSELIGCAQVRLCE 353 (573)
Q Consensus 298 ~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~d~~~~--~-------~d~~lG~~~i~l~~ 353 (573)
...|.+...+.+|.|.|++.+.+.-. ....|.|+.|+.+-. . ....+|.+.+||-.
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 56788888889999999998877543 456899999986521 1 12457777666643
No 286
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=79.15 E-value=13 Score=30.90 Aligned_cols=87 Identities=17% Similarity=0.177 Sum_probs=45.7
Q ss_pred CCeEEeeeeCCCCCceeccEEEEEEecC-------CCcEEEEEEEeCCCCCCCCceEEEEEEccccCCCc--eeEEEEEe
Q 008214 296 EKTKKSKTINNDLNPIWNEHFEFIVEDE-------STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGK--VKDVWLKL 366 (573)
Q Consensus 296 ~~~~~T~~~~~~~nP~w~e~f~f~v~~~-------~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~--~~~~w~~L 366 (573)
-+...|.++. +.+|.+|-+-.|.|... .+..+.++++..-. ...+.+|.+.+++..+.... .......+
T Consensus 10 fEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~~~~~i~~~~~l 87 (107)
T PF11618_consen 10 FETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLESNGERIHGSATL 87 (107)
T ss_dssp ---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH--S--EEEEEEE
T ss_pred eeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcCCCceEEEEEEE
Confidence 4567777766 78999999888887632 35579999998763 34689999999999985332 23344444
Q ss_pred eecccccCCCcceeEEEEEEEEe
Q 008214 367 VKDLDVQRDTKYRGQVHLELLYC 389 (573)
Q Consensus 367 ~~~~~~~~~~~~~G~i~l~l~~~ 389 (573)
.. ..+..-|.+...++..
T Consensus 88 ~g-----~~~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 88 VG-----VSGEDFGTLEYWIRLR 105 (107)
T ss_dssp -B-----SSS-TSEEEEEEEEEE
T ss_pred ec-----cCCCeEEEEEEEEEec
Confidence 32 2344788888877653
No 287
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=78.07 E-value=6.9 Score=35.87 Aligned_cols=54 Identities=19% Similarity=0.351 Sum_probs=38.9
Q ss_pred EEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEEeCCCC-----CCCCceEEEEEEccc
Q 008214 299 KKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGI-----QSSELIGCAQVRLCE 353 (573)
Q Consensus 299 ~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~d~~~~-----~~d~~lG~~~i~l~~ 353 (573)
++|-+..+ .+|.|+|++.+.+... ....|.|.+|+.... .....+|.+.+||-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 44444444 8999999999888543 456899999997632 235678888888754
No 288
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=77.68 E-value=11 Score=30.71 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=44.1
Q ss_pred EEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCC---eEEeeeeCCCCCceeccEEEEEEe--c-CCCcEEEEEEEeCCC
Q 008214 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK---TKKSKTINNDLNPIWNEHFEFIVE--D-ESTQHLVVRIYDDEG 337 (573)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~---~~~T~~~~~~~nP~w~e~f~f~v~--~-~~~~~l~i~v~d~~~ 337 (573)
+.+++....+.........++-|+.+.+-..+.. ...|+.+.-...+.|||...|.+. + +....|.|.+|+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 4456666666554332223577888766421111 224544444556899999888754 2 245689999998653
No 289
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=76.60 E-value=8.2 Score=35.31 Aligned_cols=56 Identities=13% Similarity=0.228 Sum_probs=40.2
Q ss_pred CeEEeeeeCCCCCceeccEEEEEEecC--CCcEEEEEEEeCCCCC------CCCceEEEEEEcc
Q 008214 297 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQ------SSELIGCAQVRLC 352 (573)
Q Consensus 297 ~~~~T~~~~~~~nP~w~e~f~f~v~~~--~~~~l~i~v~d~~~~~------~d~~lG~~~i~l~ 352 (573)
....|.+...+.+|.|+|++.+.+... ....|.|+.|+.+-.. ....+|.+.+||-
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence 356788888899999999998887643 4568999999854321 1245777777764
No 290
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=75.92 E-value=27 Score=34.87 Aligned_cols=108 Identities=14% Similarity=0.143 Sum_probs=71.1
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCe--eeeEEEEEeccCCCCEEEEEEEeCCCCC
Q 008214 447 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPI--WNQTFDFVVEDGLHDMLIAEVWDHDTFG 524 (573)
Q Consensus 447 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~--wne~f~f~v~~~~~~~L~i~V~d~~~~~ 524 (573)
+-.|.|.|++..++.. ....|+.++.+. ...+|..+.-+..-. -.+.....++. .+.+|.+.++-....+
T Consensus 57 kF~LLVeI~EI~~i~k-----~khiyIef~~Gr--~d~TT~~IpTsKK~RI~IqqRV~IkIRQ-cDnTLkI~lfKKkLvk 128 (508)
T PTZ00447 57 TFYLLVKINEIFNINK-----YKHIYIIFSTDK--YDFTTDEIPTNKKNRIHIDQRVDIKIRQ-CDETLRVDLFTTKLTK 128 (508)
T ss_pred eeeEEEEehhhhcccc-----ceeEEEEEEcCc--eEEEccccccCcCceEEEeeeeeeeeee-cCceEEEEEEeccccc
Confidence 4567788888777654 335788888875 555665543333322 23555555553 4678999999888777
Q ss_pred CceeEEEEEEcce-eeecC-eEeEEEEcCC--CCCeEEEEEE
Q 008214 525 KDYMGRCILTLTR-VILEG-EYTDCFELDG--TKSGKLKLHL 562 (573)
Q Consensus 525 ~d~lG~~~i~l~~-l~~~~-~~~~~~~L~~--~~~G~i~l~l 562 (573)
+.-+|.+.+.+.. +..+. .-.+||.+.. ...++|.++|
T Consensus 129 k~hIgdI~InIn~dIIdk~FPKnkWy~c~kDGq~~cRIqLSF 170 (508)
T PTZ00447 129 KVHIGQIKIDINASVISKSFPKNEWFVCFKDGQEICKVQMSF 170 (508)
T ss_pred eeEEEEEEecccHHHHhccCCccceEEEecCCceeeeEEEEe
Confidence 7789999999965 33333 2378999953 4456666655
No 291
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=75.17 E-value=17 Score=30.22 Aligned_cols=92 Identities=16% Similarity=0.188 Sum_probs=46.8
Q ss_pred EEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccC-------CCCEEEEEEEeCCCCCCceeEEEEEEcceeeecC--
Q 008214 472 YVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG-------LHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEG-- 542 (573)
Q Consensus 472 yv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~-------~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~~-- 542 (573)
||.+.+.+ -..+.|.++. +.+|.+|-+-.|.|... ....+.|+++......-..+|.+.|++.+++...
T Consensus 2 Fct~dFyd-fEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~ 79 (107)
T PF11618_consen 2 FCTYDFYD-FETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGE 79 (107)
T ss_dssp EEEE-STT----EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S-
T ss_pred EEEEEeec-eeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCc
Confidence 34444432 2455677765 78999999888888621 3458899998766321258999999999998553
Q ss_pred eEeEEEEcCC---CCCeEEEEEEEEE
Q 008214 543 EYTDCFELDG---TKSGKLKLHLKWM 565 (573)
Q Consensus 543 ~~~~~~~L~~---~~~G~i~l~l~~~ 565 (573)
.......|.+ ..-|.+...++.+
T Consensus 80 ~i~~~~~l~g~~~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 80 RIHGSATLVGVSGEDFGTLEYWIRLR 105 (107)
T ss_dssp -EEEEEEE-BSSS-TSEEEEEEEEEE
T ss_pred eEEEEEEEeccCCCeEEEEEEEEEec
Confidence 3455556643 3568888776654
No 292
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=73.13 E-value=21 Score=32.35 Aligned_cols=67 Identities=10% Similarity=0.242 Sum_probs=47.3
Q ss_pred CcEEEEEEcCcceeEeecccCC--CCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCCceeEEEEEEccee
Q 008214 470 DPYVVLTMKKSETRNKTRVVND--CLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRV 538 (573)
Q Consensus 470 dpyv~v~l~~~~~~~kT~~~~~--t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l 538 (573)
.-|+++.+++ ....+|+...- .-.=.|||.|.+.+.. --..|.++||.....++..|+.+.+++-..
T Consensus 38 ~~~ikl~~N~-k~V~~T~~~~l~~dF~v~f~~~f~v~i~~-~Pesi~l~i~E~~~~~~~~la~v~vpvP~~ 106 (168)
T PF15625_consen 38 RYYIKLFFND-KEVSRTRSRPLWSDFRVHFNEIFNVQITR-WPESIKLEIYEKSGLSDRLLAEVFVPVPGS 106 (168)
T ss_pred eEEEEEEECC-EEEEeeeeEecCCCeEEeccCEEEEEEec-CCCEEEEEEEEccCccceEEEEEEeeCCCC
Confidence 4588888876 34455554322 2234568999999876 356799999998875556999999997554
No 293
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=68.43 E-value=5.8 Score=44.58 Aligned_cols=99 Identities=18% Similarity=0.279 Sum_probs=75.6
Q ss_pred CCcEEEEEEcCcceeEeecccCCC-CCCeeeeEEEEEeccCCCCEEEEEEEeCCCCC-CceeEEEEEEcceeeecCeEeE
Q 008214 469 ADPYVVLTMKKSETRNKTRVVNDC-LNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG-KDYMGRCILTLTRVILEGEYTD 546 (573)
Q Consensus 469 ~dpyv~v~l~~~~~~~kT~~~~~t-~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~-~d~lG~~~i~l~~l~~~~~~~~ 546 (573)
.++|+.+.+.. ....+|..+.+. .+|.|.+.|+..+.. ....+++.|-+.+..+ ...+|.+.++...+..+.....
T Consensus 138 ~e~Ylt~~l~~-~~~~~t~~~~~f~e~s~~~f~~~~~~~h-~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~ 215 (887)
T KOG1329|consen 138 LENYLTVVLHK-ARYRRTHVIYEFLENSRWSFSFDIGFAH-KAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGG 215 (887)
T ss_pred ccchheeeech-hhhhchhhhhcccccchhhhhccccccc-cccEEEEeecCCccccceeEEEEeccchhhhhccccccc
Confidence 68999999864 344567777666 789999999888775 3567899999988887 5799999999999998877788
Q ss_pred EEEcCCC------CCeEEEEEEEEEecCC
Q 008214 547 CFELDGT------KSGKLKLHLKWMPQPI 569 (573)
Q Consensus 547 ~~~L~~~------~~G~i~l~l~~~p~~~ 569 (573)
|+++-.. +...+.+.+.|.+...
T Consensus 216 ~~~Il~~d~~~~~~~~~~~~~~~~~~~~~ 244 (887)
T KOG1329|consen 216 WFPILDNDGKPHQKGSNESLRLGFTPMEK 244 (887)
T ss_pred eeeeeccCCccccCCcccceEEeeEeech
Confidence 9886322 2335556677776654
No 294
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=67.23 E-value=1.6 Score=37.02 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=11.1
Q ss_pred hhhHHHHHHHHHhheeeeEEehhhhhhhhh
Q 008214 4 FFGLVVGLVVGLGIIVGFVRSENARSKLRS 33 (573)
Q Consensus 4 ~~g~~~~~~~g~~l~~~~~~~~~~~~~~~~ 33 (573)
+.|+++|.++|+.+.+++++|.-+|.+|+.
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 344444444444433333333333433333
No 295
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=61.28 E-value=26 Score=32.05 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=39.4
Q ss_pred eEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCCCCC------CceeEEEEEEcce
Q 008214 483 RNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFG------KDYMGRCILTLTR 537 (573)
Q Consensus 483 ~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~~~~------~d~lG~~~i~l~~ 537 (573)
.++|-+. ...+|.|+|++.+.+... ....|.|++++..... ...+|.+.++|-+
T Consensus 54 ~~~sv~~-~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVVY-YHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEEE-cCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 3444444 448999999999988643 4668999999866332 2479999999986
No 296
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=60.21 E-value=25 Score=32.12 Aligned_cols=56 Identities=18% Similarity=0.180 Sum_probs=41.6
Q ss_pred eeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCCCC----CC---ceeEEEEEEcce
Q 008214 482 TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF----GK---DYMGRCILTLTR 537 (573)
Q Consensus 482 ~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~~~----~~---d~lG~~~i~l~~ 537 (573)
....|.+...+.+|.|+|++.+.+.-. ....|.|++++.... ++ ..+|.+.+||-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 456788888899999999999887633 456888888874432 11 369999999864
No 297
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=56.16 E-value=9.1 Score=32.96 Aligned_cols=19 Identities=42% Similarity=0.532 Sum_probs=13.9
Q ss_pred hhhHHHHHHHHHhheeeeE
Q 008214 4 FFGLVVGLVVGLGIIVGFV 22 (573)
Q Consensus 4 ~~g~~~~~~~g~~l~~~~~ 22 (573)
++||++|+++|.++.-++.
T Consensus 3 ~i~lvvG~iiG~~~~r~~~ 21 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTS 21 (128)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5778888888888765444
No 298
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=53.93 E-value=39 Score=31.08 Aligned_cols=56 Identities=14% Similarity=0.158 Sum_probs=42.1
Q ss_pred eeEeecccCCCCCCeeeeEEEEEeccC--CCCEEEEEEEeCCCC--C-----C---ceeEEEEEEcce
Q 008214 482 TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF--G-----K---DYMGRCILTLTR 537 (573)
Q Consensus 482 ~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~~~~--~-----~---d~lG~~~i~l~~ 537 (573)
....|.+...+.+|.|+|++.+.+.-. ....|.|+.++.... . + ..+|.+.+||-+
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 456788888899999999998877632 456889999886521 1 1 269999999976
No 299
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=52.04 E-value=13 Score=28.49 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=15.7
Q ss_pred chhhHHHHHHHHHhheeeeE
Q 008214 3 FFFGLVVGLVVGLGIIVGFV 22 (573)
Q Consensus 3 ~~~g~~~~~~~g~~l~~~~~ 22 (573)
|++|+++|.++|..+.+++.
T Consensus 1 F~~g~l~Ga~~Ga~~glL~a 20 (74)
T PF12732_consen 1 FLLGFLAGAAAGAAAGLLFA 20 (74)
T ss_pred CHHHHHHHHHHHHHHHHHhC
Confidence 67888888888888776664
No 300
>PF14851 FAM176: FAM176 family
Probab=45.80 E-value=9.8 Score=33.64 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=18.4
Q ss_pred chhhHHHHHHHHHhheeeeEEe
Q 008214 3 FFFGLVVGLVVGLGIIVGFVRS 24 (573)
Q Consensus 3 ~~~g~~~~~~~g~~l~~~~~~~ 24 (573)
|+.|+.+||++.||+++.-+.+
T Consensus 26 Fv~gVC~GLlLtLcllV~risc 47 (153)
T PF14851_consen 26 FVSGVCAGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHHHHHHHHhhhee
Confidence 6889999999999988766654
No 301
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=44.39 E-value=5.6 Score=43.40 Aligned_cols=81 Identities=10% Similarity=0.038 Sum_probs=48.2
Q ss_pred CCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCCCCCCCCceEEEEEEccccCC-Ccee
Q 008214 282 KSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEP-GKVK 360 (573)
Q Consensus 282 ~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~-~~~~ 360 (573)
..|||+.+.+.. .+...+.+...+..|.|+++|...+.. ...+.+.|+.......+.....+++-.+++.. ....
T Consensus 27 al~~y~~v~vk~--~~~~~~~~~~~~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~ 102 (694)
T KOG0694|consen 27 ALQPYLAVELKV--KQGAENMTKVELRIPELRETFHVEVVA--GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQ 102 (694)
T ss_pred hhhhhheeccce--eecccccCCCCCCCchhhhheeeeeec--CCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhh
Confidence 457888887752 222334446788999999999999764 45788888887544444333333333333321 1223
Q ss_pred EEEEEe
Q 008214 361 DVWLKL 366 (573)
Q Consensus 361 ~~w~~L 366 (573)
..|..+
T Consensus 103 ~~w~~~ 108 (694)
T KOG0694|consen 103 RLWVLI 108 (694)
T ss_pred hhcccc
Confidence 455553
No 302
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=44.01 E-value=7.5 Score=28.58 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=0.0
Q ss_pred cchhhHHHHHHHHHhheeeeEE
Q 008214 2 GFFFGLVVGLVVGLGIIVGFVR 23 (573)
Q Consensus 2 ~~~~g~~~~~~~g~~l~~~~~~ 23 (573)
|.|-|.++|+++.++|.+++++
T Consensus 13 avIaG~Vvgll~ailLIlf~iy 34 (64)
T PF01034_consen 13 AVIAGGVVGLLFAILLILFLIY 34 (64)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777776655544
No 303
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=42.23 E-value=6.1 Score=33.53 Aligned_cols=29 Identities=24% Similarity=0.444 Sum_probs=18.0
Q ss_pred cchhhHHHHHHHHHhheeeeEEehhhhhh
Q 008214 2 GFFFGLVVGLVVGLGIIVGFVRSENARSK 30 (573)
Q Consensus 2 ~~~~g~~~~~~~g~~l~~~~~~~~~~~~~ 30 (573)
|.++|+++|++..++|.+++++++.+|..
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR~~Kk~~ 96 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRRLRKKSS 96 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS----
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 56899999997766666666655555533
No 304
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.04 E-value=1.5e+02 Score=26.34 Aligned_cols=47 Identities=11% Similarity=0.203 Sum_probs=33.3
Q ss_pred CCCCc-eeccEEEEEEecC---CCcEEEEEEEeCCCCCCCCceEEEEEEcc
Q 008214 306 NDLNP-IWNEHFEFIVEDE---STQHLVVRIYDDEGIQSSELIGCAQVRLC 352 (573)
Q Consensus 306 ~~~nP-~w~e~f~f~v~~~---~~~~l~i~v~d~~~~~~d~~lG~~~i~l~ 352 (573)
+-.|| +||--++...... .=..|.+.||..|..++|...|...+++-
T Consensus 59 ~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v~GYg~~hiP 109 (187)
T KOG4027|consen 59 GADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCVTGYGMLHIP 109 (187)
T ss_pred cCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCCcceeeeeeeEecC
Confidence 33344 6776555554432 12468899999999999999999888864
No 305
>PF15179 Myc_target_1: Myc target protein 1
Probab=41.55 E-value=5.9 Score=35.58 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=18.4
Q ss_pred CcchhhHHHHHHHHHhheeeeEEe
Q 008214 1 MGFFFGLVVGLVVGLGIIVGFVRS 24 (573)
Q Consensus 1 ~~~~~g~~~~~~~g~~l~~~~~~~ 24 (573)
|.|.+..++|+++|.++|+++.|.
T Consensus 23 laF~vSm~iGLviG~li~~Lltwl 46 (197)
T PF15179_consen 23 LAFCVSMAIGLVIGALIWALLTWL 46 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777888999998888876653
No 306
>KOG4092 consensus Mitochondrial F1F0-ATP synthase, subunit f [Energy production and conversion]
Probab=41.34 E-value=13 Score=29.46 Aligned_cols=45 Identities=16% Similarity=0.369 Sum_probs=35.7
Q ss_pred CCCCCCceecCcccchHHHHHHHHhhChhhHHHHHHHHHHhHHHH
Q 008214 56 AEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPV 100 (573)
Q Consensus 56 ~~~~p~w~~~~~~E~~~WlN~~l~~~Wp~~~~~~~~~~~~~~~~~ 100 (573)
..+||+|+...|..--.-.|.+....|.+.+.+++-.-..+|.++
T Consensus 36 LGelpaW~~rR~ktPsa~~gaf~R~~wR~~nkY~~Pv~~gsi~~i 80 (108)
T KOG4092|consen 36 LGELPAWILRRDKTPSAIFGAFQRGYWRYYNKYINPVKKGSISGI 80 (108)
T ss_pred ecccHHHHHhccCChHHHHHHHHHHHHHHHhheechhhcCchhHH
Confidence 367999999999888899999999999999888773333444443
No 307
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=39.46 E-value=2.9e+02 Score=24.89 Aligned_cols=81 Identities=14% Similarity=0.228 Sum_probs=53.8
Q ss_pred EEEEEeeeccCCCCCCCCCcEEEEEEec-------CCCC-eEEeeeeCC-----CCCceeccEEEEEEecC--CC-cEEE
Q 008214 266 VKLVQAKGLTNKDLIGKSDPYAVLFVRP-------LPEK-TKKSKTINN-----DLNPIWNEHFEFIVEDE--ST-QHLV 329 (573)
Q Consensus 266 V~v~~a~~L~~~d~~g~~dpyv~v~~~~-------~~~~-~~~T~~~~~-----~~nP~w~e~f~f~v~~~--~~-~~l~ 329 (573)
=.|.+|.+.. ..+-||+..+.- .+.. ...|.+... +..-.||.-|.+..... .. ..|.
T Consensus 6 G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~ 79 (168)
T PF07162_consen 6 GEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLV 79 (168)
T ss_pred EEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEE
Confidence 3466777553 346688877741 1222 456665532 34568998777665433 22 5899
Q ss_pred EEEEeCCCCCCCCceEEEEEEcc
Q 008214 330 VRIYDDEGIQSSELIGCAQVRLC 352 (573)
Q Consensus 330 i~v~d~~~~~~d~~lG~~~i~l~ 352 (573)
++||..|..+++...|...+.|-
T Consensus 80 l~V~~~D~~gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 80 LQVYSLDSWGRDRVEGYGFCHLP 102 (168)
T ss_pred EEEEEEcccCCeEEeEEeEEEeC
Confidence 99999999999999998777763
No 308
>PRK11677 hypothetical protein; Provisional
Probab=38.50 E-value=29 Score=30.09 Aligned_cols=17 Identities=35% Similarity=0.639 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHhheee
Q 008214 4 FFGLVVGLVVGLGIIVG 20 (573)
Q Consensus 4 ~~g~~~~~~~g~~l~~~ 20 (573)
++||++|+++|.++.-+
T Consensus 7 ~i~livG~iiG~~~~R~ 23 (134)
T PRK11677 7 LIGLVVGIIIGAVAMRF 23 (134)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 46678888888776543
No 309
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=36.35 E-value=3e+02 Score=24.26 Aligned_cols=94 Identities=16% Similarity=0.052 Sum_probs=49.2
Q ss_pred ceeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEcCc-----ceeEeecccCCCCCCeeeeEEEEEecc-----CCCCEEE
Q 008214 445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS-----ETRNKTRVVNDCLNPIWNQTFDFVVED-----GLHDMLI 514 (573)
Q Consensus 445 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~-----~~~~kT~~~~~t~nP~wne~f~f~v~~-----~~~~~L~ 514 (573)
.....|.|.|.+.. |. |.....|||+.+++.+. +..+.|.+.....+-.+--.....+.. +....+.
T Consensus 10 ~g~t~l~v~Iekig-lk--da~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~ 86 (147)
T PF14186_consen 10 PGMTYLSVFIEKIG-LK--DASQYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIF 86 (147)
T ss_dssp TT--EEEEEEEEEE--T--TGGG-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEE
T ss_pred CCCceEEEEEEEEE-EC--ChHHccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEE
Confidence 34567888888875 53 33455799999999532 234567765332222222123333332 2456899
Q ss_pred EEEEeCCCCCC--ceeEEEEEEcceeeec
Q 008214 515 AEVWDHDTFGK--DYMGRCILTLTRVILE 541 (573)
Q Consensus 515 i~V~d~~~~~~--d~lG~~~i~l~~l~~~ 541 (573)
+++.++....+ ...|.+-+.++++..+
T Consensus 87 fE~kH~K~kk~k~S~kcw~fme~dei~~g 115 (147)
T PF14186_consen 87 FEFKHYKPKKKKTSTKCWAFMELDEIKPG 115 (147)
T ss_dssp EEEEEEETTTTCEEEEEEEEEEGGG--SE
T ss_pred EEEEeeeccceeeeeeEEEEEEhhhccCC
Confidence 99998766544 3577788888887655
No 310
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=36.17 E-value=10 Score=41.43 Aligned_cols=93 Identities=15% Similarity=0.019 Sum_probs=56.2
Q ss_pred CCCcEEEEEEcCcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCCCCCCc-eeEEEEEEcceeeec-CeEe
Q 008214 468 KADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD-YMGRCILTLTRVILE-GEYT 545 (573)
Q Consensus 468 ~~dpyv~v~l~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d-~lG~~~i~l~~l~~~-~~~~ 545 (573)
..+||+.+.+.- .+...+.+.+.+..|.|+++|...+.. ...+.|.|+.......+ ...++++-.+++... ....
T Consensus 27 al~~y~~v~vk~-~~~~~~~~~~~~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~ 103 (694)
T KOG0694|consen 27 ALQPYLAVELKV-KQGAENMTKVELRIPELRETFHVEVVA--GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQR 103 (694)
T ss_pred hhhhhheeccce-eecccccCCCCCCCchhhhheeeeeec--CCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhh
Confidence 357888888753 122244456789999999999999774 45688888887643332 344444444444321 1224
Q ss_pred EEEEcCCCCCeEEEEEEEEE
Q 008214 546 DCFELDGTKSGKLKLHLKWM 565 (573)
Q Consensus 546 ~~~~L~~~~~G~i~l~l~~~ 565 (573)
.|..++. .|++.....+.
T Consensus 104 ~w~~~~~--~g~~~~~~~~~ 121 (694)
T KOG0694|consen 104 LWVLIEE--LGTLLKPAALT 121 (694)
T ss_pred hcccccc--ccceeeeeccc
Confidence 5666544 35665554443
No 311
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=34.43 E-value=25 Score=26.84 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=16.0
Q ss_pred CcchhhHHHHHHHHHhhee
Q 008214 1 MGFFFGLVVGLVVGLGIIV 19 (573)
Q Consensus 1 ~~~~~g~~~~~~~g~~l~~ 19 (573)
.||++|.++|.++|+++.=
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP 21 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAP 21 (74)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 3789999999999998765
No 312
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=33.53 E-value=19 Score=31.66 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=11.8
Q ss_pred cchhhHHHHHHHHHhheeeeE
Q 008214 2 GFFFGLVVGLVVGLGIIVGFV 22 (573)
Q Consensus 2 ~~~~g~~~~~~~g~~l~~~~~ 22 (573)
|...|+.+.++++++++++|.
T Consensus 53 GvVVGVGg~ill~il~lvf~~ 73 (154)
T PF04478_consen 53 GVVVGVGGPILLGILALVFIF 73 (154)
T ss_pred EEEecccHHHHHHHHHhheeE
Confidence 555666666666655544443
No 313
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=32.45 E-value=2.9e+02 Score=28.74 Aligned_cols=64 Identities=22% Similarity=0.375 Sum_probs=41.6
Q ss_pred cEEEEEEEeCCC-----C-CCCCceEEEEEEcccc-CCCc---eeEEEEEeeecccccCCCcceeEEEEEEEEee
Q 008214 326 QHLVVRIYDDEG-----I-QSSELIGCAQVRLCEL-EPGK---VKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (573)
Q Consensus 326 ~~l~i~v~d~~~-----~-~~d~~lG~~~i~l~~l-~~~~---~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~p 390 (573)
..|+|.||.-.. + ....+||.+.++|+-- ..++ -+..|+.+-+... ...+....++|+.+...|
T Consensus 95 ~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~-~~~~~~~aeLHl~Vr~Ep 168 (460)
T PF06219_consen 95 PCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQ-GSGKSPSAELHLVVRAEP 168 (460)
T ss_pred ceEEEEEEECCCCCcccccccceEEEEEEEEeccccccCCeeEEEccceecCCCCC-CCCCCCcceEEEEEeccC
Confidence 469999998542 2 4568999999999732 2222 3567998854322 112235678999887665
No 314
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=31.93 E-value=28 Score=39.24 Aligned_cols=87 Identities=18% Similarity=0.195 Sum_probs=60.2
Q ss_pred CcceEEEEEEEEeeeccCCCCCCCCCcEEEEEEecC--CCCeEEeeeeCCCCCceeccEEEEEEecCCCcEEEEEEEeCC
Q 008214 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDE 336 (573)
Q Consensus 259 ~~~G~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~~~~~~~nP~w~e~f~f~v~~~~~~~l~i~v~d~~ 336 (573)
...|-+.+.+.+|..+.. ...-||...+... ..-+.+|.++.++..|.||++++..+.. .|..++..++.+
T Consensus 756 l~ygflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~--sqS~r~~~~ek~ 828 (1112)
T KOG4269|consen 756 LLYGFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE--SQSSRLEKTEKS 828 (1112)
T ss_pred ccccceeeeecccccccc-----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhh--ccccchhhhccc
Confidence 357889999999998863 3456887766532 2346788999999999999999887763 456667776654
Q ss_pred C----------CCCCCceEEEEEEcc
Q 008214 337 G----------IQSSELIGCAQVRLC 352 (573)
Q Consensus 337 ~----------~~~d~~lG~~~i~l~ 352 (573)
. ...+...|+..+.+.
T Consensus 829 ~~~~k~~~~~~~~~~~~~~~~~~~l~ 854 (1112)
T KOG4269|consen 829 TPVEKLIDSHSQNSQNEEKRSRMKLD 854 (1112)
T ss_pred chHHHhhhccchhhcccccccccccC
Confidence 2 233455566555554
No 315
>PF14356 DUF4403: Domain of unknown function (DUF4403)
Probab=31.79 E-value=5.9e+02 Score=26.91 Aligned_cols=87 Identities=22% Similarity=0.319 Sum_probs=51.5
Q ss_pred cCCCCceEeEEEEEEcCCCeEEEEEeeEEecCcceEEEEeeeeceeeeEEEEEEEEEEEEEEEeecCCcCCCeeeEEEEE
Q 008214 119 LGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYS 198 (573)
Q Consensus 119 lG~~pP~i~~i~~~~~~~~~~~le~~~~~~~~~~i~l~~~~~~g~~~~v~v~~~~~~g~~rv~l~pl~~~~P~~~~~~~~ 198 (573)
.|..--+|.++++|. .++.+++.+++.=. +.|++.+.-+|..+.-- =.+.
T Consensus 280 ~~~~~v~v~~v~v~g-~~~rl~i~~~~~g~-------------------------~~G~i~l~G~P~yD~~~----~~l~ 329 (427)
T PF14356_consen 280 SGGKKVTVKSVSVYG-SGDRLVIALDVTGS-------------------------LNGTIYLSGRPVYDPAT----QTLR 329 (427)
T ss_pred CCCceEEEEEEEEEe-cCCcEEEEEEEEEE-------------------------EEEEEEEEEEEEECCCC----CEEE
Confidence 777777888999987 44555544433321 56666666665544421 1334
Q ss_pred ecccceeeEEEEEccccccCCcch-HHHHHHHHHHHHHhcccccc
Q 008214 199 LREKKKLDFKLKVVGGDISTIPGL-SDSIEATIHDAIEDSITWPV 242 (573)
Q Consensus 199 f~~~p~l~f~~~~~g~~~~~iP~l-~~~~~~~i~~~i~~~~~~P~ 242 (573)
|. ++||++..-+. +-+. +-++.+.|++.|++.++.|-
T Consensus 330 l~---dld~~~~t~~~----l~~~a~wl~~~~i~~~i~~~~~~~l 367 (427)
T PF14356_consen 330 LE---DLDFDLDTKNF----LLKTAAWLLHGRIRKAIEEKLVFDL 367 (427)
T ss_pred EE---eeEEEecccch----HHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 43 77887765431 2222 23667888888888876664
No 316
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=31.73 E-value=5e+02 Score=26.30 Aligned_cols=108 Identities=13% Similarity=0.204 Sum_probs=65.9
Q ss_pred EEEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCc--eeccEEEEEEecCCCcEEEEEEEeCCCCCC
Q 008214 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNP--IWNEHFEFIVEDESTQHLVVRIYDDEGIQS 340 (573)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP--~w~e~f~f~v~~~~~~~l~i~v~d~~~~~~ 340 (573)
.|-|.|.+-.++. -...-|+.+..+ ....+|..+.-+..- .-.+.....+.. ....|++.+|-..- .+
T Consensus 59 ~LLVeI~EI~~i~-----k~khiyIef~~G---r~d~TT~~IpTsKK~RI~IqqRV~IkIRQ-cDnTLkI~lfKKkL-vk 128 (508)
T PTZ00447 59 YLLVKINEIFNIN-----KYKHIYIIFSTD---KYDFTTDEIPTNKKNRIHIDQRVDIKIRQ-CDETLRVDLFTTKL-TK 128 (508)
T ss_pred eEEEEehhhhccc-----cceeEEEEEEcC---ceEEEccccccCcCceEEEeeeeeeeeee-cCceEEEEEEeccc-cc
Confidence 3556665555443 234567777776 444555443222221 223333334442 35589999998764 56
Q ss_pred CCceEEEEEEccc-c-CCCceeEEEEEeeecccccCCCcceeEEEEEE
Q 008214 341 SELIGCAQVRLCE-L-EPGKVKDVWLKLVKDLDVQRDTKYRGQVHLEL 386 (573)
Q Consensus 341 d~~lG~~~i~l~~-l-~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l 386 (573)
..-||.+.+.+.. + ...-+...|+.+.+ .+...+.|.+++
T Consensus 129 k~hIgdI~InIn~dIIdk~FPKnkWy~c~k------DGq~~cRIqLSF 170 (508)
T PTZ00447 129 KVHIGQIKIDINASVISKSFPKNEWFVCFK------DGQEICKVQMSF 170 (508)
T ss_pred eeEEEEEEecccHHHHhccCCccceEEEec------CCceeeeEEEEe
Confidence 7889999999875 3 44456889999854 567778888776
No 317
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=28.33 E-value=27 Score=39.36 Aligned_cols=70 Identities=23% Similarity=0.286 Sum_probs=51.1
Q ss_pred ceeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEc---CcceeEeecccCCCCCCeeeeEEEEEeccCCCCEEEEEEEeCC
Q 008214 445 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMK---KSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD 521 (573)
Q Consensus 445 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~---~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~ 521 (573)
...|.+.+.+++|..+.. ..+-||...+. ....+.+|+++.+|..|.||++|+..+.. .+.+.+..++++
T Consensus 756 l~ygflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~--sqS~r~~~~ek~ 828 (1112)
T KOG4269|consen 756 LLYGFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE--SQSSRLEKTEKS 828 (1112)
T ss_pred ccccceeeeecccccccc-----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhh--ccccchhhhccc
Confidence 346788899999988864 34568877653 22356789999999999999999988764 344556666654
No 318
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=27.08 E-value=1.3e+02 Score=28.14 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHhheeeeEEehh
Q 008214 4 FFGLVVGLVVGLGIIVGFVRSEN 26 (573)
Q Consensus 4 ~~g~~~~~~~g~~l~~~~~~~~~ 26 (573)
.+|.+.|+++|+.+...|..+.+
T Consensus 4 ~vg~l~al~laf~~~~~~~~~~~ 26 (209)
T PF14023_consen 4 VVGVLFALLLAFTISSAWSRYDN 26 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888877864433
No 319
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=25.86 E-value=85 Score=32.77 Aligned_cols=43 Identities=21% Similarity=0.363 Sum_probs=30.9
Q ss_pred ceEEEEEEccc-cCCCceeEEEEEeeecccccCCCcceeEEEEEEEEe
Q 008214 343 LIGCAQVRLCE-LEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (573)
Q Consensus 343 ~lG~~~i~l~~-l~~~~~~~~w~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (573)
++|.+.|++.. +..+...+.|+++..... .....|.+ +++.|.
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~---~~~~~~~l-lk~~~~ 44 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDN---KSVGEGLI-IKVSSE 44 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCC---CCcCcceE-EEEEee
Confidence 48999999999 566778899999865422 33445666 676664
No 320
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=25.35 E-value=4.6e+02 Score=22.91 Aligned_cols=84 Identities=14% Similarity=0.214 Sum_probs=55.0
Q ss_pred EEEEEEEeeeccCCCCCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEec------------CCCcEEEEE
Q 008214 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED------------ESTQHLVVR 331 (573)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~------------~~~~~l~i~ 331 (573)
|.|+-+.|-+.-- ..+.|-|..+++. ++.++|+.....--=.++|.|.|.-.. .+.+.+.++
T Consensus 4 L~i~aVTCPGv~L---~~~~~vyL~v~~l---g~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iE 77 (140)
T PF14909_consen 4 LEIHAVTCPGVWL---CDKGDVYLSVCIL---GQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIE 77 (140)
T ss_pred EEEEEEecCCeEe---CCCCCEEEEEEEc---ccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEE
Confidence 4555555554332 2456899999998 777888765433333568888887421 246678899
Q ss_pred EEeCCCCCCCCceEEEEEEcccc
Q 008214 332 IYDDEGIQSSELIGCAQVRLCEL 354 (573)
Q Consensus 332 v~d~~~~~~d~~lG~~~i~l~~l 354 (573)
++...... .+.|+..+-...++
T Consensus 78 LiQl~~~~-g~iLA~ye~n~rDf 99 (140)
T PF14909_consen 78 LIQLVPPA-GEILAYYEENTRDF 99 (140)
T ss_pred EEEEeCCC-CcEEEEEeccccce
Confidence 98866532 67788877777665
No 321
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=23.24 E-value=31 Score=25.65 Aligned_cols=15 Identities=40% Similarity=0.968 Sum_probs=7.8
Q ss_pred cchhhHHHHHHHHHh
Q 008214 2 GFFFGLVVGLVVGLG 16 (573)
Q Consensus 2 ~~~~g~~~~~~~g~~ 16 (573)
|.++|+++|+++.+.
T Consensus 51 GILYGlVIGlil~~i 65 (75)
T COG4064 51 GILYGLVIGLILCMI 65 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555554443
No 322
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=23.05 E-value=4.7e+02 Score=22.18 Aligned_cols=89 Identities=12% Similarity=0.133 Sum_probs=49.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEcCcceeEeecccCCCCCCee-eeEEEEEec--cCCCCEEEEEEEeCCC--C
Q 008214 449 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIW-NQTFDFVVE--DGLHDMLIAEVWDHDT--F 523 (573)
Q Consensus 449 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~kT~~~~~t~nP~w-ne~f~f~v~--~~~~~~L~i~V~d~~~--~ 523 (573)
.|.++-+.-.+.|..+..+..+||++++-++ .....|..... ..... .+.+.+.+. -+....+.|++++.+. .
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~-~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~ 82 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGG-KKVFSTSKSYE-DPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSM 82 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETT-EEEEETCCTCC-CCCEEETTCEEEEEEEEEEEESEEEEEEEECETTEC
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCC-ccEEEecccee-ccccccceeEEEEeCCCCeEeCCEEEEEEeCCCccc
Confidence 3444444556677666667789999999764 22222332111 11111 122333322 2234578999998873 3
Q ss_pred CCceeEEEEEEcceee
Q 008214 524 GKDYMGRCILTLTRVI 539 (573)
Q Consensus 524 ~~d~lG~~~i~l~~l~ 539 (573)
.++.+.++.+.-.-+.
T Consensus 83 ~~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 83 SKEKMFRFWFNTGFIE 98 (134)
T ss_dssp CCEEEEEEEEEGGGSB
T ss_pred ccCeEEEEEEeeeeee
Confidence 4568898888877664
No 323
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=22.69 E-value=36 Score=26.20 Aligned_cols=7 Identities=29% Similarity=0.776 Sum_probs=3.4
Q ss_pred CCCCCCc
Q 008214 56 AEFYPSW 62 (573)
Q Consensus 56 ~~~~p~w 62 (573)
..+-|.|
T Consensus 66 dae~P~w 72 (75)
T PF06667_consen 66 DAEHPNW 72 (75)
T ss_pred cCCCCCc
Confidence 3445555
No 324
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=22.68 E-value=2.5e+02 Score=29.26 Aligned_cols=60 Identities=20% Similarity=0.260 Sum_probs=40.8
Q ss_pred CEEEEEEEeCCCC-------CCceeEEEEEEcceeeecC----eEeEEEEcCCCC-------CeEEEEEEEEEecCCC
Q 008214 511 DMLIAEVWDHDTF-------GKDYMGRCILTLTRVILEG----EYTDCFELDGTK-------SGKLKLHLKWMPQPIY 570 (573)
Q Consensus 511 ~~L~i~V~d~~~~-------~~d~lG~~~i~l~~l~~~~----~~~~~~~L~~~~-------~G~i~l~l~~~p~~~~ 570 (573)
..|+|.||.-... +..+||.+.++|.--..+. -+..|..+.+.. ..++|+.++-.|.+.|
T Consensus 95 ~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpDPRf 172 (460)
T PF06219_consen 95 PCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPDPRF 172 (460)
T ss_pred ceEEEEEEECCCCCcccccccceEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCCCee
Confidence 5799999985531 2369999999987332222 136899985442 4688888887776653
No 325
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.99 E-value=49 Score=28.45 Aligned_cols=20 Identities=25% Similarity=0.559 Sum_probs=12.4
Q ss_pred cchhhHHHHHHHHHhheeee
Q 008214 2 GFFFGLVVGLVVGLGIIVGF 21 (573)
Q Consensus 2 ~~~~g~~~~~~~g~~l~~~~ 21 (573)
||++|+++|++++-+..-..
T Consensus 5 ~lvvG~iiG~~~~r~~~~~~ 24 (128)
T PF06295_consen 5 GLVVGLIIGFLIGRLTSSNQ 24 (128)
T ss_pred HHHHHHHHHHHHHHHhccch
Confidence 56667777766666654443
No 326
>PRK09458 pspB phage shock protein B; Provisional
Probab=21.87 E-value=49 Score=25.33 Aligned_cols=6 Identities=33% Similarity=0.921 Sum_probs=3.3
Q ss_pred CCCCCc
Q 008214 57 EFYPSW 62 (573)
Q Consensus 57 ~~~p~w 62 (573)
.+-|.|
T Consensus 67 ae~P~W 72 (75)
T PRK09458 67 AEHPNW 72 (75)
T ss_pred ccCCCc
Confidence 455655
No 327
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=21.47 E-value=21 Score=38.59 Aligned_cols=59 Identities=24% Similarity=0.200 Sum_probs=40.9
Q ss_pred ceEEEEEEEEeeeccCC--C--CCCCCCcEEEEEEecCCCCeEEeeeeCCCCCceeccEEEEEEecC
Q 008214 261 VGTLEVKLVQAKGLTNK--D--LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323 (573)
Q Consensus 261 ~G~L~V~v~~a~~L~~~--d--~~g~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w~e~f~f~v~~~ 323 (573)
.|....+++.|.+++.- + ..-+.++++...++ .+.++|+....+.+|+|||. .+.+.+.
T Consensus 279 ~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~---~~~frt~~~~~~e~piyNe~-~~E~~~F 341 (975)
T KOG2419|consen 279 TGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFG---EQTFRTEISDDTEKPIYNED-EREDSDF 341 (975)
T ss_pred hhhHHHHHhhhhcccchhhhhhhccCCCchheeecc---hhhhhhhhhccccccccccc-ccccccc
Confidence 34555556666665431 1 11356899999987 78899999999999999996 5555443
No 328
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=21.45 E-value=38 Score=26.05 Aligned_cols=6 Identities=33% Similarity=0.921 Sum_probs=3.2
Q ss_pred CCCCCc
Q 008214 57 EFYPSW 62 (573)
Q Consensus 57 ~~~p~w 62 (573)
.+-|.|
T Consensus 67 ~e~P~w 72 (75)
T TIGR02976 67 AEHPNW 72 (75)
T ss_pred CCCcCc
Confidence 445555
No 329
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=21.00 E-value=46 Score=27.91 Aligned_cols=22 Identities=27% Similarity=0.700 Sum_probs=18.3
Q ss_pred CcchhhHHHHHHHHHhheeeeE
Q 008214 1 MGFFFGLVVGLVVGLGIIVGFV 22 (573)
Q Consensus 1 ~~~~~g~~~~~~~g~~l~~~~~ 22 (573)
.+|++|.++|-++|....++|.
T Consensus 5 ~~~l~G~liGgiiGa~aaLL~A 26 (115)
T COG4980 5 KDFLFGILIGGIIGAAAALLFA 26 (115)
T ss_pred chHHHHHHHHHHHHHHHHHHhC
Confidence 3689999999999998776664
No 330
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.97 E-value=62 Score=27.52 Aligned_cols=15 Identities=47% Similarity=0.893 Sum_probs=10.9
Q ss_pred hhhHHHHHHHHHhhe
Q 008214 4 FFGLVVGLVVGLGII 18 (573)
Q Consensus 4 ~~g~~~~~~~g~~l~ 18 (573)
++|+++|+++|.++.
T Consensus 12 ~igLvvGi~IG~li~ 26 (138)
T COG3105 12 LIGLVVGIIIGALIA 26 (138)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467788888887754
Done!