Query 008217
Match_columns 573
No_of_seqs 263 out of 1119
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 20:56:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008217.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008217hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kks_A Integrase, IN; beta-str 78.4 7.7 0.00026 33.0 8.3 66 139-214 2-67 (152)
2 3hph_A Integrase, IN; protein- 59.0 29 0.00099 31.6 8.2 66 140-215 61-126 (219)
3 3hot_A Transposable element ma 56.7 50 0.0017 32.4 10.1 55 153-210 187-252 (345)
4 1c0m_A Protein (integrase); HI 52.7 48 0.0016 30.8 8.7 70 139-213 10-79 (238)
5 1cxq_A Avian sarcoma virus int 52.1 70 0.0024 27.3 9.2 71 139-214 11-81 (162)
6 3l3u_A POL polyprotein; DNA in 46.6 47 0.0016 28.4 7.1 63 139-211 9-71 (163)
7 1bco_A MUA domain II, bacterio 36.4 81 0.0028 30.9 7.7 71 139-212 16-94 (327)
8 3av9_A Integrase, IN; protein- 33.1 98 0.0034 27.1 7.1 65 139-213 29-93 (183)
9 2x78_A Integrase; viral protei 31.9 1.3E+02 0.0044 26.5 7.8 70 139-214 13-83 (200)
10 1c6v_A Protein (SIV integrase) 29.7 1.3E+02 0.0045 25.1 7.2 63 139-211 9-71 (164)
11 2bw3_A Transposase; DNA recomb 28.5 1.8E+02 0.0061 30.4 9.3 68 168-239 130-201 (534)
12 1ex4_A Integrase; SH3-like dom 24.7 1.7E+02 0.0057 26.9 7.4 65 140-214 10-74 (239)
13 2l0z_A Glycoprotein G2; zinc-b 23.0 24 0.00081 23.2 0.6 16 429-444 20-35 (42)
14 2ayd_A WRKY transcription fact 22.6 53 0.0018 25.0 2.6 19 6-24 56-74 (76)
15 3f9k_A Integrase; protein-prot 21.6 1.6E+02 0.0054 26.3 6.3 63 140-212 60-122 (210)
No 1
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=78.35 E-value=7.7 Score=33.00 Aligned_cols=66 Identities=8% Similarity=0.076 Sum_probs=47.0
Q ss_pred CCEEEecceeccccCCceeeeEEEEcCCCCeeeEeEeeeccCCcchHHHHHHHHHHHhCCCCCcEEeccccHHHHH
Q 008217 139 GDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSK 214 (573)
Q Consensus 139 ~dvi~iD~Ty~tn~y~~pl~~~~Gv~~~~~~~~~g~al~~~E~~es~~w~l~~~~~~~~~~~p~~iitD~~~al~~ 214 (573)
++++.+|.|+..++ +.++.+|..-+.+ ++..+ .+++.+...-+|..+....+ |..|.||+......
T Consensus 2 n~~w~~D~t~~~~~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~g---p~~i~sDnG~~f~s 67 (152)
T 3kks_A 2 SHLWQMDNTHWNKT-----IIWVAVETNSGLV-EAQVI-PEETALQVALCILQLIQRYT---VLHLHSDNGPCFTA 67 (152)
T ss_dssp CCEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSSCHHHHHHHHHHHHHHSC---CSEEEECSCHHHHS
T ss_pred CcEEEEeeeeeCCE-----EEEEEEEcCCCcE-EEEEe-CCcCHHHHHHHHHHHHHHhC---CcEEecCCchHhhH
Confidence 46788999988543 4666677766655 44444 57777777777766666655 99999999987754
No 2
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Probab=59.03 E-value=29 Score=31.65 Aligned_cols=66 Identities=15% Similarity=0.155 Sum_probs=45.3
Q ss_pred CEEEecceeccccCCceeeeEEEEcCCCCeeeEeEeeeccCCcchHHHHHHHHHHHhCCCCCcEEeccccHHHHHH
Q 008217 140 DVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKA 215 (573)
Q Consensus 140 dvi~iD~Ty~tn~y~~pl~~~~Gv~~~~~~~~~g~al~~~E~~es~~w~l~~~~~~~~~~~p~~iitD~~~al~~A 215 (573)
+++.+|.|+..++ +.++-+|..-+.+ .+.. +.+++.+...-++..+....| |.+|.||+......+
T Consensus 61 ~~w~~D~t~~~~~-----y~~~~iD~~Sr~~-~~~~-~~~~~~~~~~~~l~~~~~~~g---p~~i~sDnG~~F~s~ 126 (219)
T 3hph_A 61 DHWQVDYTHYEDK-----IILVWVETNSGLI-YAER-VKGETGQEFRVQTMKWYAMFA---PKSLQSDNGPAFVAE 126 (219)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEEE-ESCCCHHHHHHHHHHHHHHHC---CCEEEECCCHHHHSH
T ss_pred ceEEEEEecCCCE-----EEEEEEeCCCCcE-EEEE-eCCCCHHHHHHHHHHHHHHhC---CcEEEeCCCchhhhH
Confidence 5677888876544 4566777776655 4444 566777776666666665555 999999999877543
No 3
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=56.69 E-value=50 Score=32.39 Aligned_cols=55 Identities=5% Similarity=0.012 Sum_probs=34.5
Q ss_pred CCceeeeEEEEcCCCCeeeEeEeeec---cCCcchHHHHHHHHHHHh----CC----CCCcEEeccccH
Q 008217 153 YNLICAPFVGVNHHWKNMLFGCAFLL---DESTHSYVWLFESFLESM----GN----TQPKTIFTNENE 210 (573)
Q Consensus 153 y~~pl~~~~Gv~~~~~~~~~g~al~~---~E~~es~~w~l~~~~~~~----~~----~~p~~iitD~~~ 210 (573)
++..+....+++..| ++++.++. .-+.+.|.-+|+.++..+ +. ..+.+++.|..+
T Consensus 187 ~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~ 252 (345)
T 3hot_A 187 FGKKTMLCVWWDQSG---VIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAP 252 (345)
T ss_dssp TCCEEEEEEEEESSS---EEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCT
T ss_pred cCCcEEEEEEEcccC---ceeeEecCCCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCC
Confidence 444555566666666 45666665 457777877787765543 21 235689999854
No 4
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=52.70 E-value=48 Score=30.80 Aligned_cols=70 Identities=13% Similarity=0.074 Sum_probs=48.1
Q ss_pred CCEEEecceeccccCCceeeeEEEEcCCCCeeeEeEeeeccCCcchHHHHHHHHHHHhCCCCCcEEeccccHHHH
Q 008217 139 GDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMS 213 (573)
Q Consensus 139 ~dvi~iD~Ty~tn~y~~pl~~~~Gv~~~~~~~~~g~al~~~E~~es~~w~l~~~~~~~~~~~p~~iitD~~~al~ 213 (573)
.+++.+|.||.....+ -.+.++-+|..-+. ++|+.+- +++.+...-+|+......+ .|.+|.||+.....
T Consensus 10 ~~~w~~D~~~~~~~~g-~~yl~~~iD~~Sr~-i~~~~~~-~~~~~~v~~~l~~~~~~~g--~p~~i~sDnG~~f~ 79 (238)
T 1c0m_A 10 LQIWQTDFTLEPRMAP-RSWLAVTVDTASSA-IVVTQHG-RVTSVAVQHHWATAIAVLG--RPKAIKTDNGSCFT 79 (238)
T ss_dssp TSEEEEEEEECGGGCS-SCEEEEEEETTTCC-EEEEEES-SCCHHHHHHHHHHHHHHHC--CCSEEEECSCHHHH
T ss_pred CCEEEEeeccccccCC-CEEEEEEEECCCCC-EEEEEcc-CCCHHHHHHHHHHHHHHhC--CCcEEEECCCCccc
Confidence 4688899998664333 24566667766554 4456654 7777777777776666655 48999999998764
No 5
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=52.10 E-value=70 Score=27.33 Aligned_cols=71 Identities=13% Similarity=0.067 Sum_probs=46.9
Q ss_pred CCEEEecceeccccCCceeeeEEEEcCCCCeeeEeEeeeccCCcchHHHHHHHHHHHhCCCCCcEEeccccHHHHH
Q 008217 139 GDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSK 214 (573)
Q Consensus 139 ~dvi~iD~Ty~tn~y~~pl~~~~Gv~~~~~~~~~g~al~~~E~~es~~w~l~~~~~~~~~~~p~~iitD~~~al~~ 214 (573)
.+++.+|.|+.....+ ..+.++.+|..-+.+ +|+.+- +.+.+...-+|+......+ .|.+|.||+......
T Consensus 11 ~~~~~~D~~~~~~~~g-~~yl~~~iD~~Sr~i-~~~~~~-~~~~~~v~~~l~~~~~~~g--~p~~i~sDnG~~f~s 81 (162)
T 1cxq_A 11 LQIWQTDFTLEPRMAP-RSWLAVTVDTASSAI-VVTQHG-RVTSVAAQHHWATAIAVLG--RPKAIKTDNGSCFTS 81 (162)
T ss_dssp CCEEEEEEEECGGGTT-SCEEEEEEETTTCCE-EEEEES-SCCHHHHHHHHHHHHHHHC--CCSEEECCSCHHHHS
T ss_pred CCEEEeeeeecccCCC-CEEEEEEEEcCCCeE-EEEECC-CccHHHHHHHHHHHHHHHC--CCeEEEeCCchhhhh
Confidence 3678899888654333 345667778766544 455554 6777666666666555554 488999999987753
No 6
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=46.61 E-value=47 Score=28.39 Aligned_cols=63 Identities=14% Similarity=0.110 Sum_probs=43.3
Q ss_pred CCEEEecceeccccCCceeeeEEEEcCCCCeeeEeEeeeccCCcchHHHHHHHHHHHhCCCCCcEEeccccHH
Q 008217 139 GDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEA 211 (573)
Q Consensus 139 ~dvi~iD~Ty~tn~y~~pl~~~~Gv~~~~~~~~~g~al~~~E~~es~~w~l~~~~~~~~~~~p~~iitD~~~a 211 (573)
.+++.+|.||..++ +.++-+|..-+.+ ++..+ .+++.+...-++..+....+ |.+|.||+...
T Consensus 9 ~~~w~~D~t~~~g~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~~---~~~i~sD~G~~ 71 (163)
T 3l3u_A 9 PGIWQLDCTHLEGK-----VILVAVHVASGYI-EAEVI-PAETGQETAYFLLKLAGRWP---VKTVHTDNGSN 71 (163)
T ss_dssp TTEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSCCHHHHHHHHHHHHHHSC---CCEEEECCCGG
T ss_pred CCEEEEEecccCCc-----EEEEEEecCCCcE-EEEEe-CCCcHHHHHHHHHHHHHHcC---CcEEeecChHh
Confidence 46888999998653 4667777776654 45444 56677777766666555544 58999999754
No 7
>1bco_A MUA domain II, bacteriophage MU transposase; polynucleotidyl transferase, DNA binding, endonuclease, integrase; 2.40A {Enterobacteria phage MU} SCOP: b.48.1.1 c.55.3.3 PDB: 1bcm_A
Probab=36.38 E-value=81 Score=30.88 Aligned_cols=71 Identities=11% Similarity=0.051 Sum_probs=48.1
Q ss_pred CCEEEecceecccc----CCc--eeeeEEEEcCCCCeeeEeEeeeccCCcchHHHHHHHHHHHhCCCCCc--EEeccccH
Q 008217 139 GDVVSFDATFRLNK----YNL--ICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPK--TIFTNENE 210 (573)
Q Consensus 139 ~dvi~iD~Ty~tn~----y~~--pl~~~~Gv~~~~~~~~~g~al~~~E~~es~~w~l~~~~~~~~~~~p~--~iitD~~~ 210 (573)
++++.+|.|+..-. -+. ...+.+-+|..-+ .++|+.+...|+.++..-+|.......+ .|. .|.+|+-.
T Consensus 16 ~~~w~~D~t~~d~~~~~~~g~~~r~~l~~~iD~~SR-~ivg~~~~~~~~~~~v~~aL~~a~~~~G--~P~~~~i~sDnG~ 92 (327)
T 1bco_A 16 MQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTR-KILGWRCDVSENIDSIRLSFMDVVTRYG--IPEDFHITIDNTR 92 (327)
T ss_dssp TTEEEEEEEECSBCEECTTSCEECCEEEEEEETTTC-CEEEEEEESSCCHHHHHHHHHHHHHHHC--EESSCEEECCCTT
T ss_pred CcEEEecCCEEEEEEECCCCccceeEEEEEEECCCC-cEEEEEEECCCCHHHHHHHHHHHHHhcC--CCCCcEEEeeCch
Confidence 57888888875432 121 2345556676555 4578888888988888777776665544 577 99999875
Q ss_pred HH
Q 008217 211 AM 212 (573)
Q Consensus 211 al 212 (573)
..
T Consensus 93 ~f 94 (327)
T 1bco_A 93 GA 94 (327)
T ss_dssp ST
T ss_pred hh
Confidence 43
No 8
>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A
Probab=33.06 E-value=98 Score=27.07 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=39.6
Q ss_pred CCEEEecceeccccCCceeeeEEEEcCCCCeeeEeEeeeccCCcchHHHHHHHHHHHhCCCCCcEEeccccHHHH
Q 008217 139 GDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMS 213 (573)
Q Consensus 139 ~dvi~iD~Ty~tn~y~~pl~~~~Gv~~~~~~~~~g~al~~~E~~es~~w~l~~~~~~~~~~~p~~iitD~~~al~ 213 (573)
++++.+|.|+..++| .++.||..-+.+ +|+. +.+++.....-++..+.... .+.+|.+|+.....
T Consensus 29 ~~~w~~D~~~~~g~~-----~l~~vD~~Sr~~-~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~i~sDnG~ef~ 93 (183)
T 3av9_A 29 PGIWQLDCTHLEGKV-----ILVAVHVASGYI-EAEV-IPAETGQETAYFLLKLAGRW---PVKTVHTDNGSNFT 93 (183)
T ss_dssp TTEEEEEEEEETTEE-----EEEEEETTTTEE-EEEE-ESSCCHHHHHHHHHHHHHHS---CCCEEECSSHHHHH
T ss_pred CCEEEEeccccCCcE-----EEEEEECCCCCE-EEEE-eCCccchHHHHHHHHHHHHc---CCcEEEecCchhcc
Confidence 467888888873322 345556665554 5554 45556555554444444333 35999999988764
No 9
>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Probab=31.94 E-value=1.3e+02 Score=26.47 Aligned_cols=70 Identities=14% Similarity=-0.041 Sum_probs=43.4
Q ss_pred CCEEEecc-eeccccCCceeeeEEEEcCCCCeeeEeEeeeccCCcchHHHHHHHHHHHhCCCCCcEEeccccHHHHH
Q 008217 139 GDVVSFDA-TFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSK 214 (573)
Q Consensus 139 ~dvi~iD~-Ty~tn~y~~pl~~~~Gv~~~~~~~~~g~al~~~E~~es~~w~l~~~~~~~~~~~p~~iitD~~~al~~ 214 (573)
.+++.+|. ++.... ++..+.++.+|..-+.+ +++.+ .+.+.+...-+|+ .+.....|..|.||+......
T Consensus 13 ~~~~~~D~~~~~~~~-~g~~y~~~~iD~~Sr~~-~~~~~-~~~~~~~~~~~l~---~~~~~g~p~~i~sDnG~~f~s 83 (200)
T 2x78_A 13 FDKFFIDYIGPLPPS-QGYLYVLVVVDGMTGFT-WLYPT-KAPSTSATVKSLN---VLTSIAIPRVIHSDQGAAFTS 83 (200)
T ss_dssp TSEEEEEEECCCSCB-TTBCEEEEEEETTTCCE-EEEEE-SSSCHHHHHHHHH---HHTTTCCCSEEEECSCHHHHS
T ss_pred ccEEEEEEeCCCccC-CCCeEEEEEEeCCCCcE-EEEEC-CCCCHHHHHHHHH---HHHHhCCCcEEEecCCcceeh
Confidence 36788887 554433 34556777788766554 45555 6666655444443 333335799999999987644
No 10
>1c6v_A Protein (SIV integrase); DNA integration, DNA binding protein; 3.00A {Simian immunodeficiency virus} SCOP: c.55.3.2
Probab=29.67 E-value=1.3e+02 Score=25.11 Aligned_cols=63 Identities=11% Similarity=0.021 Sum_probs=37.0
Q ss_pred CCEEEecceeccccCCceeeeEEEEcCCCCeeeEeEeeeccCCcchHHHHHHHHHHHhCCCCCcEEeccccHH
Q 008217 139 GDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEA 211 (573)
Q Consensus 139 ~dvi~iD~Ty~tn~y~~pl~~~~Gv~~~~~~~~~g~al~~~E~~es~~w~l~~~~~~~~~~~p~~iitD~~~a 211 (573)
.+++.+|.|+..+ . +.++.+|..-+. ++|+. +.+.+.+...-++..+. ....|.+|.+|+...
T Consensus 9 ~~~w~~D~~~~~g----~-~~l~~iD~~Sr~-~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~i~sDnG~~ 71 (164)
T 1c6v_A 9 LGTWQMDCTHLEG----K-IVIVAVHVASGF-IEAEV-IPQETGRQTALFLLKLA---GRWPITHLHTDNGAN 71 (164)
T ss_dssp TTEEEEEEEEETT----E-EEEEEECTTSCC-EEEEE-CSSCSHHHHHHHHHHHH---TTSCCCEEECCCCSS
T ss_pred CCEEEEeecccCC----E-EEEEEEEccCCE-EEEEE-cCCCchHHHHHHHHHHH---HhcCCCEEEeCCchh
Confidence 3578889888822 2 344447766654 44554 44555555544443333 333489999998753
No 11
>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B
Probab=28.47 E-value=1.8e+02 Score=30.37 Aligned_cols=68 Identities=9% Similarity=0.207 Sum_probs=47.9
Q ss_pred CeeeEeEeeec--cCCcchHHHHHHHHHHHhCCCC--CcEEeccccHHHHHHHHHhcccCccccccchHHHHHHHh
Q 008217 168 KNMLFGCAFLL--DESTHSYVWLFESFLESMGNTQ--PKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRN 239 (573)
Q Consensus 168 ~~~~~g~al~~--~E~~es~~w~l~~~~~~~~~~~--p~~iitD~~~al~~Ai~~vfP~~~h~~C~~Hi~kn~~~~ 239 (573)
+..++|+.-+. +.|.++..-.+...++..+-.. -..++||....|..|++. ..|.-|.-|++.-+.+.
T Consensus 130 ~~~~L~~~~~~~~~~t~~~i~~~i~~~l~~~~l~~~~~v~~vtDnasn~~~~~~~----~~~i~C~~H~lnLi~~~ 201 (534)
T 2bw3_A 130 RDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIKFVTDRGANVVKSLAN----NIRINCSSHLLSNVLEN 201 (534)
T ss_dssp EEEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTTCEEEECCCHHHHHHTTT----SEEEECHHHHHHHHHHH
T ss_pred EEEEEeEeecCCCCCCHHHHHHHHHHHHHHcCCCcccceeEECCCHHHHHHHHhc----CcccccHHHHHHHHHHH
Confidence 34567776666 3566776666666665555332 557899999999888764 35889999998887765
No 12
>1ex4_A Integrase; SH3-like domain, nonspecific DNA binding beta sheet, CIS-Pro viral protein; HET: CPS; 2.80A {Human immunodeficiency virus 1} SCOP: b.34.7.1 c.55.3.2 PDB: 1qmc_A 1ihv_A 1ihw_A
Probab=24.72 E-value=1.7e+02 Score=26.87 Aligned_cols=65 Identities=15% Similarity=0.154 Sum_probs=39.5
Q ss_pred CEEEecceeccccCCceeeeEEEEcCCCCeeeEeEeeeccCCcchHHHHHHHHHHHhCCCCCcEEeccccHHHHH
Q 008217 140 DVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSK 214 (573)
Q Consensus 140 dvi~iD~Ty~tn~y~~pl~~~~Gv~~~~~~~~~g~al~~~E~~es~~w~l~~~~~~~~~~~p~~iitD~~~al~~ 214 (573)
.++.+|.|+..++ +.++.||..-+ .++|+. +.+++.....-++..+.... .|.+|.||+.....+
T Consensus 10 ~~w~~D~t~~~g~-----~~l~~vD~~Sr-~i~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~i~sDnG~eF~s 74 (239)
T 1ex4_A 10 GIWQLDCTHLEGK-----VILVAVHVASG-YIEAEV-IPAETGQETAYFLLKLAGRW---PVKTIHTDNGSNFTG 74 (239)
T ss_dssp GEEEEEEEEETTE-----EEEEEECTTTC-CEEEEC-CSSSSTTHHHHHHHHHHHHS---CCCEEEECCCHHHHC
T ss_pred CEEEEeccccCCe-----EEEEEEECCCC-eEEEEE-eCCCCHHHHHHHHHHHHHhc---CCcEEEecCcHHHHH
Confidence 5788999988332 24455565544 445554 44556555554444433332 479999999987643
No 13
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=23.02 E-value=24 Score=23.21 Aligned_cols=16 Identities=13% Similarity=0.291 Sum_probs=13.0
Q ss_pred CeEEeecccccccCcc
Q 008217 429 QDISCSCKLFERMGIL 444 (573)
Q Consensus 429 ~~~~CsC~~fe~~Gip 444 (573)
..-.|+|+.|..-|.|
T Consensus 20 ~~~~C~CG~y~~~~kp 35 (42)
T 2l0z_A 20 SLGGCRCGKYPNLKKP 35 (42)
T ss_dssp TTSSBTTTTBCCCCCC
T ss_pred CCceeccccccCCCCc
Confidence 4568999999887776
No 14
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=22.58 E-value=53 Score=25.00 Aligned_cols=19 Identities=16% Similarity=0.382 Sum_probs=15.9
Q ss_pred ECCeEEEEEEecccCCCCC
Q 008217 6 SNGVWVISHINFEHNHELA 24 (573)
Q Consensus 6 ~~~~w~v~~~~~~HNH~l~ 24 (573)
++....++.+..+|||++.
T Consensus 56 ~d~~~~~~tY~G~H~H~~p 74 (76)
T 2ayd_A 56 HDTKLLITTYEGKHDHDMP 74 (76)
T ss_dssp SSTTEEEEEEESCCSSCCC
T ss_pred CCCCEEEEEEccCcCCCCC
Confidence 4667888999999999973
No 15
>3f9k_A Integrase; protein-protein complex, AIDS, DNA integration, endonuclease magnesium, metal-binding, multifunctional enzyme; 3.20A {Human immunodeficiency virus type 2} PDB: 1e0e_A
Probab=21.57 E-value=1.6e+02 Score=26.34 Aligned_cols=63 Identities=13% Similarity=0.082 Sum_probs=39.5
Q ss_pred CEEEecceeccccCCceeeeEEEEcCCCCeeeEeEeeeccCCcchHHHHHHHHHHHhCCCCCcEEeccccHHH
Q 008217 140 DVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAM 212 (573)
Q Consensus 140 dvi~iD~Ty~tn~y~~pl~~~~Gv~~~~~~~~~g~al~~~E~~es~~w~l~~~~~~~~~~~p~~iitD~~~al 212 (573)
.++.+|.|+..++| .++.+|..-+ .+.+. .+.+++.+...-++..+.... .|.+|.||+....
T Consensus 60 ~~w~~D~~~~~~~y-----~l~~vD~~sr-~~~~~-~~~~~~~~~~~~~l~~~~~~~---g~~~i~sDnG~~F 122 (210)
T 3f9k_A 60 GTWQMDCTHLEGKI-----IIVAVHVASG-FIEAE-VIPQESGRQTALFLLKLASRW---PITHLHTDNGANF 122 (210)
T ss_dssp TEEEEEEEEETTEE-----EEEEEETTTT-EEEEE-EESSCCHHHHHHHHHHHHTTS---CCSEEEECCCTTT
T ss_pred CeEeEeecccCCeE-----EEEEEEcCCC-cEEEE-EeCCcchHHHHHHHHHHHHHc---CCCEEEeCCCchh
Confidence 56778888876543 5666776666 44444 445567777666655544333 3556999998643
Done!