Query 008217
Match_columns 573
No_of_seqs 263 out of 1119
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 20:57:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008217.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008217hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1cxqa_ c.55.3.2 (A:) Retrovir 71.8 9 0.00066 30.7 9.2 70 139-213 7-76 (147)
2 d1exqa_ c.55.3.2 (A:) Retrovir 68.9 3.7 0.00027 33.7 6.0 63 141-213 5-67 (154)
3 d2bw3a2 c.55.3.12 (A:163-609) 37.3 48 0.0035 30.7 9.0 68 168-239 43-114 (447)
4 d1c6va_ c.55.3.2 (A:) Retrovir 33.1 42 0.003 26.8 6.7 61 141-211 6-66 (159)
5 d1wj2a_ g.79.1.1 (A:) WRKY DNA 25.6 20 0.0014 25.2 2.5 18 6-23 52-69 (71)
6 d1u04a2 c.55.3.10 (A:324-770) 20.7 1.7E+02 0.012 27.7 9.3 70 141-210 231-306 (447)
7 d1ob1c2 g.3.11.4 (C:46-96) Mer 18.7 17 0.0012 23.3 0.8 20 428-447 26-49 (51)
8 d1yvua2 c.55.3.10 (A:315-706) 17.7 1.8E+02 0.013 26.9 8.8 69 141-209 184-257 (392)
9 d1fxla2 d.58.7.1 (A:119-203) H 17.0 84 0.0061 21.9 4.8 52 126-193 18-69 (85)
10 d3begb1 d.58.7.1 (B:121-207) S 13.5 86 0.0063 21.9 4.0 43 128-193 14-56 (87)
No 1
>d1cxqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Rous sarcoma virus RSV [TaxId: 11886]}
Probab=71.81 E-value=9 Score=30.72 Aligned_cols=70 Identities=13% Similarity=0.040 Sum_probs=45.2
Q ss_pred CCEEEecceeccccCCceeeeEEEEcCCCCeeeEeEeeeccCCcchHHHHHHHHHHHhCCCCCcEEeccccHHHH
Q 008217 139 GDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMS 213 (573)
Q Consensus 139 ~dvi~iD~Ty~tn~y~~pl~~~~Gv~~~~~~~~~g~al~~~E~~es~~w~l~~~~~~~~~~~p~~iitD~~~al~ 213 (573)
++++.+|-|+.....+.. +..+.+|..-+- +.++ .+..++.......|..+....+ .|..|.||..+...
T Consensus 7 ~~~w~~D~~~~~~~~~~~-~l~v~vD~~Sr~-i~~~-~~~~~t~~~~~~~l~~~~~~~g--~p~~i~sDnG~~F~ 76 (147)
T d1cxqa_ 7 LQIWQTDFTLEPRMAPRS-WLAVTVDTASSA-IVVT-QHGRVTSVAAQHHWATAIAVLG--RPKAIKTDNGSCFT 76 (147)
T ss_dssp CCEEEEEEEECGGGTTSC-EEEEEEETTTCC-EEEE-EESSCCHHHHHHHHHHHHHHHC--CCSEEECCSCHHHH
T ss_pred CCEEEEEEEEecCCCCeE-EEEEEEecccce-eccc-ccCccchHHHHHHHHHHHHHhC--CCeEEEeccccccc
Confidence 367888888776544444 344556755543 3444 4667777766666666555554 59999999988764
No 2
>d1exqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=68.94 E-value=3.7 Score=33.73 Aligned_cols=63 Identities=16% Similarity=0.144 Sum_probs=43.7
Q ss_pred EEEecceeccccCCceeeeEEEEcCCCCeeeEeEeeeccCCcchHHHHHHHHHHHhCCCCCcEEeccccHHHH
Q 008217 141 VVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMS 213 (573)
Q Consensus 141 vi~iD~Ty~tn~y~~pl~~~~Gv~~~~~~~~~g~al~~~E~~es~~w~l~~~~~~~~~~~p~~iitD~~~al~ 213 (573)
+..+|.|+..|+| .++.||..-+ ++++. .+.+++.+...-+|..+... ..|+.|.||+.....
T Consensus 5 ~W~~D~~~~~~k~-----ilv~vD~~Sr-~~~~~-~~~~~~~~~v~~~l~~~~~~---~~p~~I~sDnG~eF~ 67 (154)
T d1exqa_ 5 IWQLDCTHLEGKV-----ILVAVHVASG-YIEAE-VIPAETGQETAYFLLKLAGR---WPVKTIHTDNGSNFT 67 (154)
T ss_dssp EEEEEEEEETTEE-----EEEEEETTTT-EEEEE-EESSSSHHHHHHHHHHHHHH---SCCCEEECCCCGGGT
T ss_pred ceeeEEEEECCEE-----EEEEEECcCC-cEEEE-EecCcchHHHHhhhhhheec---cCCCEEEEcCCcccc
Confidence 6678889887764 5677887755 44544 45667777777777665543 248999999987654
No 3
>d2bw3a2 c.55.3.12 (A:163-609) Transposase Hermes, catalytic domain {House fly (Musca domestica) [TaxId: 7370]}
Probab=37.25 E-value=48 Score=30.72 Aligned_cols=68 Identities=10% Similarity=0.209 Sum_probs=47.0
Q ss_pred CeeeEeEeeeccC--CcchHHHHHHHHHHHhC--CCCCcEEeccccHHHHHHHHHhcccCccccccchHHHHHHHh
Q 008217 168 KNMLFGCAFLLDE--STHSYVWLFESFLESMG--NTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRN 239 (573)
Q Consensus 168 ~~~~~g~al~~~E--~~es~~w~l~~~~~~~~--~~~p~~iitD~~~al~~Ai~~vfP~~~h~~C~~Hi~kn~~~~ 239 (573)
+..++||.-+..+ +.+++...+...+...+ ...-..+.||....|..+ +++..+.-|.-|.+.-+.+.
T Consensus 43 ~~~~L~~~~~~~~~~tg~~i~~~l~~~l~~~~i~~~~~~~~~~D~a~n~~~~----~~~~~~i~C~aH~Lnl~v~d 114 (447)
T d2bw3a2 43 RDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIKFVTDRGANVVKS----LANNIRINCSSHLLSNVLEN 114 (447)
T ss_dssp EEEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTTCEEEECCCHHHHHH----TTTSEEEECHHHHHHHHHHH
T ss_pred eEEEEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCcceEEEEEcCCcHhhHHH----hhccccccchhhhhhhhhHH
Confidence 3567777666533 56777666666655433 335667899999887654 67888899999988766543
No 4
>d1c6va_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Simian immunodeficiency virus [TaxId: 11723]}
Probab=33.14 E-value=42 Score=26.76 Aligned_cols=61 Identities=13% Similarity=0.100 Sum_probs=38.1
Q ss_pred EEEecceeccccCCceeeeEEEEcCCCCeeeEeEeeeccCCcchHHHHHHHHHHHhCCCCCcEEeccccHH
Q 008217 141 VVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEA 211 (573)
Q Consensus 141 vi~iD~Ty~tn~y~~pl~~~~Gv~~~~~~~~~g~al~~~E~~es~~w~l~~~~~~~~~~~p~~iitD~~~a 211 (573)
+..+|.||..++| .++.||..-+ ++.++ .+.+++.+...-++..+. ....|..|.||+...
T Consensus 6 ~W~~D~t~~~~k~-----il~~vD~~Sr-~~~~~-~~~~~~a~~v~~~l~~~~---~~~~~~~I~sDnG~~ 66 (159)
T d1c6va_ 6 TWQMDCTHLEGKI-----VIVAVHVASG-FIEAE-VIPQETGRQTALFLLKLA---GRWPITHLHTDNGAN 66 (159)
T ss_dssp EEEEEEEEETTEE-----EEEEECTTSC-CEEEE-ECSSCSHHHHHHHHHHHH---TTSCCCEEECCCCSS
T ss_pred ceeeEEEEECCEE-----EEEEEECCCC-eEEEE-EeeccCHHHHHHHHHHHh---hccCCceeEecCCCc
Confidence 4568999887763 4555665544 44554 556677776665554443 333466799998864
No 5
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=25.64 E-value=20 Score=25.17 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=15.0
Q ss_pred ECCeEEEEEEecccCCCC
Q 008217 6 SNGVWVISHINFEHNHEL 23 (573)
Q Consensus 6 ~~~~w~v~~~~~~HNH~l 23 (573)
+++.-.++.+.++|||++
T Consensus 52 ~d~~~~~vtY~G~H~h~~ 69 (71)
T d1wj2a_ 52 TDPKAVVTTYEGKHNHDL 69 (71)
T ss_dssp TTTSEEEEEEESCCSSCC
T ss_pred CCCCEEEEEEeeEeCCCC
Confidence 456778888999999987
No 6
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]}
Probab=20.69 E-value=1.7e+02 Score=27.73 Aligned_cols=70 Identities=13% Similarity=0.007 Sum_probs=38.7
Q ss_pred EEEecceeccccCCceeeeEEEEcCCCCeeeEeE-ee--eccCCcch---HHHHHHHHHHHhCCCCCcEEeccccH
Q 008217 141 VVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGC-AF--LLDESTHS---YVWLFESFLESMGNTQPKTIFTNENE 210 (573)
Q Consensus 141 vi~iD~Ty~tn~y~~pl~~~~Gv~~~~~~~~~g~-al--~~~E~~es---~~w~l~~~~~~~~~~~p~~iitD~~~ 210 (573)
||.+|.|+.+..-..-...++.++++|.+.-+.. .+ -..|..+- +.-.+..|.+..+...|..||.=||.
T Consensus 231 IIGiDVth~~~~~~~~~g~a~v~~~~g~~~~~s~v~~q~~~~E~idl~~~i~~aL~~~~~~n~~~~P~rIIIyRDG 306 (447)
T d1u04a2 231 IIGIDVAPMKRSEGYIGGSAVMFDSQGYIRKIVPIKIGEQRGESVDMNEFFKEMVDKFKEFNIKLDNKKILLLRDG 306 (447)
T ss_dssp EEEEEEEEECCTTTCEEEEEEEEETTSCEEEEEEEECCCCSSSSCCHHHHHHHHHHHHHHTTCCCTTCEEEEECSB
T ss_pred EEEEeccccCCCCeEEEEEEEEEeCCCceEEEEEEEccCCCCceecHHHHHHHHHHHHHHHhCCCCCceEEEEECC
Confidence 6889999976443333345556777776554321 21 22343332 33445555555555678877766554
No 7
>d1ob1c2 g.3.11.4 (C:46-96) Merozoite surface protein 1 (MSP-1) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=18.74 E-value=17 Score=23.32 Aligned_cols=20 Identities=35% Similarity=0.886 Sum_probs=15.7
Q ss_pred CCeEEeecccccc----cCcchhh
Q 008217 428 TQDISCSCKLFER----MGILCRH 447 (573)
Q Consensus 428 ~~~~~CsC~~fe~----~GipCrH 447 (573)
...+.|+|.+-.. .|+.|+|
T Consensus 26 skkIvC~Ck~p~~~~~~~GVFCS~ 49 (51)
T d1ob1c2 26 GKKITCECTKPDSYPLFDGIFCSH 49 (51)
T ss_dssp SCCCEEEECSTTCCEEGGGTEECC
T ss_pred cceEEEEecCCCCCcccceEEeec
Confidence 3688999998554 6999987
No 8
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]}
Probab=17.68 E-value=1.8e+02 Score=26.90 Aligned_cols=69 Identities=7% Similarity=-0.085 Sum_probs=38.7
Q ss_pred EEEecceeccccCCc-eee-eEEEEcCCCCeeeEeEeeeccCCcchHHHHHHHHHH---HhCCCCCcEEecccc
Q 008217 141 VVSFDATFRLNKYNL-ICA-PFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLE---SMGNTQPKTIFTNEN 209 (573)
Q Consensus 141 vi~iD~Ty~tn~y~~-pl~-~~~Gv~~~~~~~~~g~al~~~E~~es~~w~l~~~~~---~~~~~~p~~iitD~~ 209 (573)
+|.+|.|+....-+. +.+ .++..+..|....+..........+...-+++..++ ...+..|.-||.=+|
T Consensus 184 iIGiDv~h~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~ee~~~~~~~~~l~~~~~~~~~~P~rIIi~Rd 257 (392)
T d1yvua2 184 FVGIDISRITRDGKTVNAVAFTKIFNSKGELVRYYLTSYPAFGEKLTEKAIGDVFSLLEKLGFKKGSKIVVHRD 257 (392)
T ss_dssp EEEECEEECCCSSSCCCEEEEEEEECTTSCEEEEEEEEECSCTTHHHHHHHHHHHHHHHHTTCCTTCEEEEEES
T ss_pred EEEEEEEecCCCCCcccEEEEEEEEcCCCCEEEEEEEecCCccHHHHHHHHHHHHHHHHHhcCCCCceEEEEeC
Confidence 577999997644433 333 344567777766655544444444444444444332 235667877764333
No 9
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.01 E-value=84 Score=21.88 Aligned_cols=52 Identities=6% Similarity=-0.015 Sum_probs=34.3
Q ss_pred ecccccHHHHhhcCCEEEecceeccccCCceeeeEEEEcCCCCeeeEeEeeeccCCcchHHHHHHHHH
Q 008217 126 WRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFL 193 (573)
Q Consensus 126 w~~~~~~~~~~~f~dvi~iD~Ty~tn~y~~pl~~~~Gv~~~~~~~~~g~al~~~E~~es~~w~l~~~~ 193 (573)
|....-+..|..||+|..+.--... ..|+ .-||||+.=++.+.-..+++.+-
T Consensus 18 ~te~~L~~~F~~~G~v~~v~i~~d~--------------~~g~--~kg~afV~f~~~~~a~~Ai~~ln 69 (85)
T d1fxla2 18 MTQKELEQLFSQYGRIITSRILVDQ--------------VTGV--SRGVGFIRFDKRIEAEEAIKGLN 69 (85)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECT--------------TTCC--EEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCcccccccccc--------------cccc--CCCeeEEEEcCHHHHHHHHHHhC
Confidence 3455667888999998765432110 1232 45788888889998888887653
No 10
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.53 E-value=86 Score=21.93 Aligned_cols=43 Identities=14% Similarity=0.010 Sum_probs=31.5
Q ss_pred ccccHHHHhhcCCEEEecceeccccCCceeeeEEEEcCCCCeeeEeEeeeccCCcchHHHHHHHHH
Q 008217 128 DGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFL 193 (573)
Q Consensus 128 ~~~~~~~~~~f~dvi~iD~Ty~tn~y~~pl~~~~Gv~~~~~~~~~g~al~~~E~~es~~w~l~~~~ 193 (573)
...-+..|..||+|+.++-- .. |+|+|.=++.+.-..+++.+-
T Consensus 14 ~~~l~~~F~~~G~v~~~~i~-----------------~~------g~afV~f~~~~~a~~Ai~~l~ 56 (87)
T d3begb1 14 WQDLKDHMREAGDVCYADVY-----------------RD------GTGVVEFVRKEDMTYAVRKLD 56 (87)
T ss_dssp TTHHHHHHGGGSCEEEEEEC-----------------TT------SEEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhccccccccc-----------------cc------ceeeEEeCCHHHHHHHHHHhC
Confidence 34557788899998776421 01 689999999999888887764
Done!