BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008218
(573 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 17/76 (22%)
Query: 278 PDASPEELDA--------------SDSTCIICREEMT---TAKKLICGHLFHVHCLRSWL 320
P AS E +DA + C IC E A +L C H FH C+ WL
Sbjct: 15 PPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWL 74
Query: 321 ERQHTCPTCRALVVPP 336
++ TCP CR + PP
Sbjct: 75 QKSGTCPVCRCMFPPP 90
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 283 EELDASDSTCIICREEMT---TAKKLICGHLFHVHCLRSWLERQHTCPTCR 330
EE S C +C+E+ + ++L C HLFH C+ WLE+ +CP CR
Sbjct: 9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCR 59
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 268 KITSNMNDRFPDASPEELDASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCP 327
++ S+MND + + CIIC E A L C H F +C+ W++R+ CP
Sbjct: 52 EVLSHMNDVLEN---------ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECP 102
Query: 328 TCR 330
CR
Sbjct: 103 ICR 105
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 268 KITSNMNDRFPDASPEELDASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCP 327
++ S+MND + + CIIC E A L C H F +C+ W++R+ CP
Sbjct: 41 EVLSHMNDVLEN---------ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECP 91
Query: 328 TCR 330
CR
Sbjct: 92 ICR 94
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 281 SPEELDASDSTCIICR---EEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRA 331
+P + + C++C E + L C H FH C+ WL+ TCP CRA
Sbjct: 15 NPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRA 68
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 268 KITSNMNDRFPDASPEELDASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCP 327
++ S+MND + + CIIC E A L C H F +C+ W++R+ CP
Sbjct: 41 EVLSHMNDVLEN---------ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECP 91
Query: 328 TCR 330
CR
Sbjct: 92 ICR 94
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 292 CIICREEMTTAKKLI----CGHLFHVHCLRSWLERQHTCPTCRALVV 334
C +C E+ ++ CGH FH C+ WL TCP CR VV
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 282 PEELDASDSTCIICRE---EMTTAKKLI----CGHLFHVHCLRSWLERQHTCPTCR 330
P + + +C IC + E+ +LI CGH+F CLR L+ +TCPTCR
Sbjct: 65 PIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 120
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 291 TCIICRE---EMTTAKKLI----CGHLFHVHCLRSWLERQHTCPTCR 330
+C IC + E+ +LI CGH+F CLR L+ +TCPTCR
Sbjct: 9 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 55
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 291 TCIICRE---EMTTAKKLI----CGHLFHVHCLRSWLERQHTCPTCR 330
+C IC + E+ +LI CGH+F CLR L+ +TCPTCR
Sbjct: 12 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 58
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 291 TCIICRE---EMTTAKKLI----CGHLFHVHCLRSWLERQHTCPTCR 330
+C IC + E+ +LI CGH+F CLR L+ +TCPTCR
Sbjct: 5 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 51
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 291 TCIICRE---EMTTAKKLI----CGHLFHVHCLRSWLERQHTCPTCR 330
+C IC + E+ +LI CGH+F CLR L+ +TCPTCR
Sbjct: 17 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 63
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 292 CIICR---EEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCR 330
C IC EE ++L C HLFH C+ WL CP CR
Sbjct: 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICR 58
>pdb|3ZTG|A Chain A, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
pdb|3ZTG|B Chain B, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
Length = 92
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 279 DASPEELDASDSTCIICREEMTTAKKL-ICGHLFHVHCLRSWL--ERQHTCPTCRALVVP 335
D P+EL C+IC++ MT A + CG+ + C+R+ L +HTCPTC V
Sbjct: 8 DPIPDEL-----LCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 62
Query: 336 PE 337
P+
Sbjct: 63 PD 64
>pdb|2YUR|A Chain A, Solution Structure Of The Ring Finger Of Human
Retinoblastoma-Binding Protein 6
Length = 74
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 279 DASPEELDASDSTCIICREEMTTAKKL-ICGHLFHVHCLRSWL--ERQHTCPTCRALVVP 335
D P+EL C+IC++ MT A + CG+ + C+R+ L +HTCPTC V
Sbjct: 10 DPIPDEL-----LCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64
Query: 336 PE 337
P+
Sbjct: 65 PD 66
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 284 ELDASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQ-HTCPTCR 330
E+ ++ C IC E K CGHL CL SW E + CP CR
Sbjct: 22 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 69
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 284 ELDASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQ-HTCPTCR 330
E+ ++ C IC E K CGHL CL SW E + CP CR
Sbjct: 19 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 66
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 284 ELDASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQ-HTCPTCRALV 333
E+ ++ C IC E K CGHL CL SW E + CP CR +
Sbjct: 329 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 284 ELDASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQ-HTCPTCRALV 333
E+ ++ C IC E K CGHL CL SW E + CP CR +
Sbjct: 327 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 284 ELDASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQ-HTCPTCRALV 333
E+ ++ C IC E K CGHL CL SW E + CP CR +
Sbjct: 329 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 284 ELDASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQ-HTCPTCRALV 333
E+ ++ C IC E K CGHL CL SW E + CP CR +
Sbjct: 327 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 292 CIICREEMTTAKKL---ICGHLFHVHCLRSWLERQHTCPTCRALVV 334
C +C E+ +L C H FH CL WLE + CP C V+
Sbjct: 18 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 286 DASDSTCIICREEMTTAKK----LICGHLFHVHCLRSWLERQHTCPTC 329
+ S C IC E++ T++ L CGHL H C L+ + CP C
Sbjct: 2 NVSQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
Query: 292 CIICR--------EEMTTAKKLICGHLFHVHCLRSWLERQHTCP 327
CI C+ EE T A +C H FH HC+ WL+ + CP
Sbjct: 53 CIECQANQASATSEECTVAWG-VCNHAFHFHCISRWLKTRQVCP 95
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
Query: 292 CIICR--------EEMTTAKKLICGHLFHVHCLRSWLERQHTCP 327
CI C+ EE T A +C H FH HC+ WL+ + CP
Sbjct: 35 CIECQANQASATSEECTVAWG-VCNHAFHFHCISRWLKTRQVCP 77
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
Query: 292 CIICR--------EEMTTAKKLICGHLFHVHCLRSWLERQHTCP 327
CI C+ EE T A +C H FH HC+ WL+ + CP
Sbjct: 45 CIECQANQASATSEECTVAWG-VCNHAFHFHCISRWLKTRQVCP 87
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
Query: 292 CIICR--------EEMTTAKKLICGHLFHVHCLRSWLERQHTCP 327
CI C+ EE T A +C H FH HC+ WL+ + CP
Sbjct: 62 CIECQANQASATSEECTVAWG-VCNHAFHFHCISRWLKTRQVCP 104
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
Query: 292 CIICR--------EEMTTAKKLICGHLFHVHCLRSWLERQHTCP 327
CI C+ EE T A +C H FH HC+ WL+ + CP
Sbjct: 43 CIECQANQASATSEECTVAWG-VCNHAFHFHCISRWLKTRQVCP 85
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
Query: 292 CIICR--------EEMTTAKKLICGHLFHVHCLRSWLERQHTCP 327
CI C+ EE T A +C H FH HC+ WL+ + CP
Sbjct: 51 CIECQANQASATSEECTVAWG-VCNHAFHFHCISRWLKTRQVCP 93
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
Query: 292 CIICR--------EEMTTAKKLICGHLFHVHCLRSWLERQHTCP 327
CI C+ EE T A +C H FH HC+ WL+ + CP
Sbjct: 51 CIECQANQASATSEECTVAWG-VCNHAFHFHCISRWLKTRQVCP 93
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 287 ASDSTCIICREEMTTAKK----LICGHLFHVHCLRSWLERQHTCPTC 329
+ S C IC E++ T++ L CGHL H C L+ + CP C
Sbjct: 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 291 TCIICREEMTTAKKLICGHLFHVHCL-----RSWLER-QHTCPTCRALVVPPEN 338
TC IC E +T L CGH F CL +S L++ + +CP CR + PEN
Sbjct: 21 TCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR-ISYQPEN 73
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 284 ELDASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQ-HTCPTCRALV 333
E+ ++ C IC E K CGHL CL +W E CP CR +
Sbjct: 333 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 383
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 37.4 bits (85), Expect = 0.021, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 284 ELDASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQ-HTCPTCR 330
E+ ++ C IC E K CGHL CL +W E CP CR
Sbjct: 21 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 68
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 35.8 bits (81), Expect = 0.060, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSW---LERQHTCPTC 329
+++C +C E + + CGH F C+ W LER CP C
Sbjct: 15 EASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 292 CIICREEMTT-AKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGAST 342
C IC E+ + + L C H F C+ W+ + TCP C+ VP E+ T
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCK---VPVESVVHT 56
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 289 DSTCIICREEMTTAKKLI--CGHLFHVHCLRSWLERQHTCPTCR 330
+ C IC M LI C H F C+ W +R CP CR
Sbjct: 15 EEECCIC---MDGRADLILPCAHSFCQKCIDKWSDRHRNCPICR 55
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 292 CIICREEMTTAKKLI----CGHLFHVHCLRSWLERQHTCPTCR 330
C+ C+ E ++ C H FH C+ W+++ + CP C+
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 292 CIICREEMTTAKKLI-CGHLFHVHCLRSWLERQHTCPTCRALVVPPE 337
C IC E A + C H + C+R +L + CPTC V P+
Sbjct: 25 CGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPD 71
>pdb|2CO8|A Chain A, Solution Structures Of The Lim Domain Of Human Nedd9
Interacting Protein With Calponin Homology And Lim
Domains
Length = 82
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 10/54 (18%)
Query: 283 EELDASDSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLERQHTCPTCRALVVP 335
+E A D C +C E + ++L + GH FH C R C TC A + P
Sbjct: 10 QEAGAGD-LCALCGEHLYVLERLCVNGHFFHRSCFR--------CHTCEATLWP 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,894,670
Number of Sequences: 62578
Number of extensions: 486716
Number of successful extensions: 1201
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1163
Number of HSP's gapped (non-prelim): 43
length of query: 573
length of database: 14,973,337
effective HSP length: 104
effective length of query: 469
effective length of database: 8,465,225
effective search space: 3970190525
effective search space used: 3970190525
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)