Query 008218
Match_columns 573
No_of_seqs 476 out of 2437
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 21:00:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008218.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008218hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5243 HRD1 HRD ubiquitin lig 100.0 5.5E-53 1.2E-57 420.5 34.3 332 2-337 1-348 (491)
2 KOG0802 E3 ubiquitin ligase [P 100.0 3.1E-35 6.8E-40 326.0 29.2 329 7-335 2-342 (543)
3 KOG4628 Predicted E3 ubiquitin 99.5 2.3E-13 4.9E-18 140.0 11.6 73 264-336 202-280 (348)
4 PF13639 zf-RING_2: Ring finge 99.2 4.9E-12 1.1E-16 92.7 1.7 41 290-330 1-44 (44)
5 KOG0317 Predicted E3 ubiquitin 99.1 4.9E-11 1.1E-15 118.2 3.2 53 284-336 234-286 (293)
6 KOG0823 Predicted E3 ubiquitin 99.1 1.4E-10 2.9E-15 112.0 5.7 54 286-339 44-100 (230)
7 PHA02929 N1R/p28-like protein; 99.0 1.6E-10 3.5E-15 114.2 4.1 48 287-334 172-227 (238)
8 PLN03208 E3 ubiquitin-protein 99.0 3.4E-10 7.3E-15 107.5 5.7 50 288-337 17-82 (193)
9 PF12678 zf-rbx1: RING-H2 zinc 99.0 2.7E-10 5.8E-15 92.8 3.5 44 287-330 17-73 (73)
10 COG5540 RING-finger-containing 98.8 1.4E-09 3E-14 107.9 3.1 48 288-335 322-373 (374)
11 KOG1785 Tyrosine kinase negati 98.8 1.8E-08 3.8E-13 103.3 9.9 60 287-346 367-428 (563)
12 PF13920 zf-C3HC4_3: Zinc fing 98.8 2.5E-09 5.5E-14 80.5 2.8 46 289-334 2-48 (50)
13 PF13923 zf-C3HC4_2: Zinc fing 98.8 3.5E-09 7.7E-14 75.4 2.5 38 292-329 1-39 (39)
14 PF15227 zf-C3HC4_4: zinc fing 98.7 7.6E-09 1.7E-13 74.8 2.7 38 292-329 1-42 (42)
15 KOG1734 Predicted RING-contain 98.7 6.3E-07 1.4E-11 87.9 16.1 50 287-336 222-283 (328)
16 cd00162 RING RING-finger (Real 98.7 1.5E-08 3.3E-13 73.3 3.5 43 291-333 1-45 (45)
17 smart00504 Ubox Modified RING 98.7 1.7E-08 3.6E-13 79.6 3.7 46 290-335 2-47 (63)
18 PF12861 zf-Apc11: Anaphase-pr 98.6 2.6E-08 5.6E-13 82.2 2.8 47 288-334 20-82 (85)
19 KOG0320 Predicted E3 ubiquitin 98.6 2.9E-08 6.3E-13 92.0 2.9 50 287-336 129-180 (187)
20 KOG0828 Predicted E3 ubiquitin 98.6 1.8E-07 3.9E-12 98.4 8.8 49 287-335 569-635 (636)
21 PF00097 zf-C3HC4: Zinc finger 98.5 4.3E-08 9.2E-13 70.5 2.4 38 292-329 1-41 (41)
22 COG5574 PEX10 RING-finger-cont 98.5 4.6E-08 9.9E-13 96.1 2.2 50 288-337 214-265 (271)
23 PHA02926 zinc finger-like prot 98.5 6.7E-08 1.5E-12 92.8 2.9 48 287-334 168-230 (242)
24 smart00184 RING Ring finger. E 98.5 9.8E-08 2.1E-12 66.6 3.1 38 292-329 1-39 (39)
25 KOG3970 Predicted E3 ubiquitin 98.4 2.4E-07 5.3E-12 88.4 5.1 76 288-370 49-134 (299)
26 TIGR00599 rad18 DNA repair pro 98.4 1.2E-07 2.6E-12 100.4 3.3 48 288-335 25-72 (397)
27 PF13705 TRC8_N: TRC8 N-termin 98.4 3E-06 6.6E-11 91.4 12.2 177 43-228 279-468 (508)
28 PF14634 zf-RING_5: zinc-RING 98.3 5.1E-07 1.1E-11 66.0 2.7 41 291-331 1-44 (44)
29 PF13445 zf-RING_UBOX: RING-ty 98.2 5.3E-07 1.1E-11 65.4 1.9 35 292-327 1-43 (43)
30 PF04564 U-box: U-box domain; 98.2 6E-07 1.3E-11 73.2 2.2 47 289-335 4-51 (73)
31 KOG2164 Predicted E3 ubiquitin 98.2 6.1E-07 1.3E-11 95.7 2.5 52 289-340 186-242 (513)
32 KOG1493 Anaphase-promoting com 98.2 5.1E-07 1.1E-11 71.9 1.4 48 287-334 18-81 (84)
33 KOG0287 Postreplication repair 98.2 5.5E-07 1.2E-11 90.9 1.6 48 289-336 23-70 (442)
34 KOG0804 Cytoplasmic Zn-finger 98.2 5.9E-07 1.3E-11 94.0 1.7 45 288-334 174-222 (493)
35 COG5432 RAD18 RING-finger-cont 98.2 9E-07 1.9E-11 87.6 2.4 46 289-334 25-70 (391)
36 COG5194 APC11 Component of SCF 98.1 2.2E-06 4.7E-11 68.9 2.6 47 289-335 20-82 (88)
37 KOG4265 Predicted E3 ubiquitin 97.9 5.1E-06 1.1E-10 85.4 3.3 49 287-335 288-337 (349)
38 COG5219 Uncharacterized conser 97.9 3.2E-06 6.8E-11 94.9 1.4 48 287-334 1467-1523(1525)
39 KOG2930 SCF ubiquitin ligase, 97.9 6.4E-06 1.4E-10 69.5 1.8 45 289-333 46-107 (114)
40 KOG4172 Predicted E3 ubiquitin 97.8 4.2E-06 9.2E-11 62.3 0.4 48 287-334 5-54 (62)
41 PF11793 FANCL_C: FANCL C-term 97.8 3.6E-06 7.8E-11 68.0 -0.1 46 289-334 2-66 (70)
42 KOG2177 Predicted E3 ubiquitin 97.7 1.5E-05 3.2E-10 81.4 2.3 44 287-330 11-54 (386)
43 TIGR00570 cdk7 CDK-activating 97.7 3E-05 6.4E-10 79.3 3.6 49 289-337 3-57 (309)
44 smart00744 RINGv The RING-vari 97.6 3.4E-05 7.5E-10 57.7 2.5 40 291-330 1-49 (49)
45 KOG0824 Predicted E3 ubiquitin 97.6 2.2E-05 4.7E-10 78.8 1.8 49 288-336 6-55 (324)
46 PF14835 zf-RING_6: zf-RING of 97.6 2.2E-05 4.9E-10 61.1 0.6 46 289-336 7-53 (65)
47 KOG0311 Predicted E3 ubiquitin 97.4 4.2E-05 9.1E-10 78.3 0.3 49 288-336 42-92 (381)
48 KOG0827 Predicted E3 ubiquitin 97.3 8.6E-05 1.9E-09 76.7 1.7 42 289-330 4-52 (465)
49 KOG0978 E3 ubiquitin ligase in 97.3 8.4E-05 1.8E-09 83.4 1.2 48 288-335 642-690 (698)
50 KOG2879 Predicted E3 ubiquitin 97.2 0.00084 1.8E-08 66.8 7.5 50 285-334 235-287 (298)
51 KOG4159 Predicted E3 ubiquitin 97.2 0.00017 3.7E-09 76.9 2.3 49 287-335 82-130 (398)
52 COG5222 Uncharacterized conser 97.0 0.00092 2E-08 66.9 5.5 46 289-334 274-322 (427)
53 KOG1645 RING-finger-containing 97.0 0.00043 9.3E-09 72.2 2.8 46 288-333 3-55 (463)
54 KOG1941 Acetylcholine receptor 96.9 0.001 2.2E-08 69.0 4.9 46 287-332 363-414 (518)
55 KOG1039 Predicted E3 ubiquitin 96.9 0.00047 1E-08 72.1 2.1 48 287-334 159-221 (344)
56 COG5152 Uncharacterized conser 96.7 0.00069 1.5E-08 64.0 1.4 46 289-334 196-241 (259)
57 KOG2114 Vacuolar assembly/sort 96.6 0.0021 4.6E-08 72.7 4.8 69 262-333 813-882 (933)
58 KOG0297 TNF receptor-associate 96.6 0.00095 2.1E-08 71.8 1.9 52 287-338 19-71 (391)
59 KOG0825 PHD Zn-finger protein 96.5 0.00061 1.3E-08 75.8 0.1 31 304-334 141-171 (1134)
60 KOG1002 Nucleotide excision re 96.4 0.0013 2.8E-08 70.5 1.6 50 287-336 534-588 (791)
61 KOG1571 Predicted E3 ubiquitin 96.3 0.0036 7.7E-08 64.9 4.1 45 287-334 303-347 (355)
62 KOG4275 Predicted E3 ubiquitin 96.3 0.00088 1.9E-08 67.0 -0.4 42 289-334 300-342 (350)
63 KOG1813 Predicted E3 ubiquitin 96.3 0.0015 3.2E-08 65.7 0.9 49 288-336 240-288 (313)
64 KOG4692 Predicted E3 ubiquitin 96.3 0.0039 8.5E-08 63.9 3.9 49 287-335 420-468 (489)
65 PF11789 zf-Nse: Zinc-finger o 96.2 0.0027 5.8E-08 49.1 1.9 42 287-328 9-53 (57)
66 KOG2660 Locus-specific chromos 96.0 0.0021 4.6E-08 65.7 0.6 47 289-335 15-62 (331)
67 KOG4445 Uncharacterized conser 95.8 0.0066 1.4E-07 61.1 3.0 50 289-338 115-190 (368)
68 PF14447 Prok-RING_4: Prokaryo 95.6 0.0057 1.2E-07 46.3 1.4 46 289-336 7-52 (55)
69 KOG1428 Inhibitor of type V ad 95.6 0.0079 1.7E-07 70.8 3.0 48 287-334 3484-3544(3738)
70 COG5236 Uncharacterized conser 95.4 0.01 2.3E-07 60.7 3.0 56 278-333 50-107 (493)
71 PHA02825 LAP/PHD finger-like p 95.0 0.017 3.7E-07 53.4 2.8 48 286-334 5-59 (162)
72 KOG0826 Predicted E3 ubiquitin 94.8 0.11 2.5E-06 53.2 8.1 47 287-333 298-345 (357)
73 PHA02862 5L protein; Provision 94.8 0.019 4.1E-07 52.0 2.3 45 289-334 2-53 (156)
74 KOG2932 E3 ubiquitin ligase in 94.7 0.37 7.9E-06 49.1 11.3 44 289-334 90-134 (389)
75 PF14570 zf-RING_4: RING/Ubox 94.4 0.024 5.1E-07 42.0 1.7 42 292-333 1-47 (48)
76 KOG1814 Predicted E3 ubiquitin 94.3 0.025 5.5E-07 59.5 2.4 50 282-331 177-237 (445)
77 PF10367 Vps39_2: Vacuolar sor 94.3 0.064 1.4E-06 46.4 4.5 31 287-317 76-108 (109)
78 KOG3268 Predicted E3 ubiquitin 94.0 0.03 6.6E-07 52.3 2.0 46 290-335 166-229 (234)
79 KOG3039 Uncharacterized conser 93.6 0.055 1.2E-06 53.2 3.0 50 288-337 220-273 (303)
80 PF12906 RINGv: RING-variant d 93.4 0.041 8.9E-07 40.7 1.5 38 292-329 1-47 (47)
81 KOG0802 E3 ubiquitin ligase [P 93.2 0.069 1.5E-06 60.2 3.6 61 275-339 465-525 (543)
82 KOG1952 Transcription factor N 93.0 0.048 1E-06 62.1 1.8 47 286-332 188-245 (950)
83 COG5175 MOT2 Transcriptional r 92.9 0.053 1.2E-06 55.5 1.9 48 288-335 13-65 (480)
84 KOG4185 Predicted E3 ubiquitin 92.4 0.078 1.7E-06 54.9 2.4 45 289-333 3-54 (296)
85 PF09726 Macoilin: Transmembra 92.3 21 0.00046 41.5 22.0 18 110-127 37-54 (697)
86 KOG1940 Zn-finger protein [Gen 92.1 0.091 2E-06 53.4 2.4 43 289-331 158-204 (276)
87 KOG2034 Vacuolar sorting prote 92.1 0.18 4E-06 58.0 5.0 34 287-320 815-850 (911)
88 PF10272 Tmpp129: Putative tra 92.0 0.23 4.9E-06 52.6 5.2 49 286-334 268-351 (358)
89 PF08746 zf-RING-like: RING-li 91.9 0.14 3.1E-06 37.1 2.5 38 292-329 1-43 (43)
90 KOG1001 Helicase-like transcri 91.8 0.067 1.4E-06 61.3 1.0 46 290-336 455-502 (674)
91 KOG4367 Predicted Zn-finger pr 91.5 0.93 2E-05 48.1 8.9 33 288-320 3-35 (699)
92 PHA03096 p28-like protein; Pro 91.3 0.1 2.2E-06 53.6 1.7 42 290-331 179-231 (284)
93 PF05883 Baculo_RING: Baculovi 91.2 0.12 2.5E-06 46.8 1.8 40 289-328 26-74 (134)
94 PF04641 Rtf2: Rtf2 RING-finge 90.6 0.23 5.1E-06 50.5 3.6 49 287-336 111-163 (260)
95 KOG4739 Uncharacterized protei 90.4 0.092 2E-06 51.9 0.4 44 291-336 5-50 (233)
96 COG5183 SSM4 Protein involved 90.3 0.18 3.9E-06 57.1 2.6 48 287-334 10-66 (1175)
97 PF05290 Baculo_IE-1: Baculovi 89.9 0.77 1.7E-05 41.3 5.7 49 288-336 79-134 (140)
98 KOG0827 Predicted E3 ubiquitin 89.2 0.047 1E-06 57.0 -2.8 46 289-334 196-245 (465)
99 KOG0298 DEAD box-containing he 88.7 0.16 3.4E-06 60.6 0.6 46 288-333 1152-1198(1394)
100 PF07800 DUF1644: Protein of u 88.3 0.47 1E-05 44.0 3.3 33 289-321 2-47 (162)
101 KOG3053 Uncharacterized conser 85.6 0.32 6.9E-06 48.4 0.8 47 287-333 18-81 (293)
102 KOG3800 Predicted E3 ubiquitin 85.0 0.63 1.4E-05 47.2 2.6 44 291-334 2-51 (300)
103 KOG1100 Predicted E3 ubiquitin 84.9 0.37 8.1E-06 47.3 0.9 40 291-334 160-200 (207)
104 KOG0260 RNA polymerase II, lar 83.2 49 0.0011 40.2 16.8 22 288-309 1390-1411(1605)
105 KOG0309 Conserved WD40 repeat- 82.1 0.79 1.7E-05 51.9 2.1 24 305-328 1046-1069(1081)
106 KOG2817 Predicted E3 ubiquitin 81.0 1.2 2.6E-05 47.2 2.9 42 288-329 333-380 (394)
107 KOG3002 Zn finger protein [Gen 80.6 0.98 2.1E-05 46.8 2.0 46 287-335 46-92 (299)
108 KOG3161 Predicted E3 ubiquitin 80.0 0.66 1.4E-05 51.6 0.6 36 290-327 12-51 (861)
109 KOG0260 RNA polymerase II, lar 79.6 21 0.00046 43.0 12.3 9 69-77 1020-1028(1605)
110 COG5220 TFB3 Cdk activating ki 79.1 1.2 2.6E-05 43.9 1.9 46 288-333 9-63 (314)
111 KOG0825 PHD Zn-finger protein 78.8 1.1 2.3E-05 51.1 1.7 47 288-334 95-154 (1134)
112 KOG0801 Predicted E3 ubiquitin 78.7 0.72 1.6E-05 42.7 0.3 36 278-313 164-204 (205)
113 PF03854 zf-P11: P-11 zinc fin 76.7 1.1 2.4E-05 32.9 0.7 43 291-335 4-47 (50)
114 KOG0971 Microtubule-associated 75.9 41 0.00088 39.6 12.9 26 478-504 219-244 (1243)
115 KOG3899 Uncharacterized conser 75.7 1.4 3.1E-05 44.6 1.5 28 307-334 325-365 (381)
116 PRK12495 hypothetical protein; 75.2 90 0.0019 30.9 15.1 30 288-335 41-70 (226)
117 KOG1609 Protein involved in mR 74.6 1.7 3.6E-05 45.1 1.7 47 289-335 78-135 (323)
118 KOG0269 WD40 repeat-containing 74.5 2.3 5E-05 48.5 2.8 38 291-328 781-820 (839)
119 KOG4362 Transcriptional regula 73.5 1 2.2E-05 51.2 -0.2 46 289-334 21-69 (684)
120 KOG2068 MOT2 transcription fac 73.3 4 8.7E-05 42.4 4.0 45 290-334 250-298 (327)
121 KOG4718 Non-SMC (structural ma 68.7 2.6 5.6E-05 41.0 1.4 43 289-331 181-224 (235)
122 KOG2302 T-type voltage-gated C 67.1 2.9E+02 0.0064 33.5 18.2 20 193-212 1336-1355(1956)
123 PF02891 zf-MIZ: MIZ/SP-RING z 65.4 6.4 0.00014 29.4 2.7 42 290-332 3-50 (50)
124 PTZ00249 variable surface prot 61.7 21 0.00046 39.3 6.8 12 546-557 422-433 (516)
125 KOG0956 PHD finger protein AF1 59.9 75 0.0016 36.4 10.6 47 287-333 115-181 (900)
126 KOG3113 Uncharacterized conser 58.6 8.8 0.00019 38.4 3.0 49 287-337 109-161 (293)
127 PLN03223 Polycystin cation cha 58.0 4.8E+02 0.01 32.9 23.3 49 9-57 1177-1231(1634)
128 KOG3039 Uncharacterized conser 57.5 6.9 0.00015 39.0 2.1 33 288-320 42-74 (303)
129 PF07218 RAP1: Rhoptry-associa 56.5 1.5E+02 0.0033 33.3 12.0 22 495-516 224-245 (782)
130 KOG1812 Predicted E3 ubiquitin 56.2 6 0.00013 42.7 1.6 35 288-322 145-183 (384)
131 KOG3842 Adaptor protein Pellin 55.4 10 0.00022 39.1 2.9 49 287-335 339-415 (429)
132 KOG2066 Vacuolar assembly/sort 54.6 7.7 0.00017 44.7 2.1 43 288-331 783-832 (846)
133 PF04710 Pellino: Pellino; In 54.1 4.2 9.2E-05 43.2 0.0 48 288-335 327-402 (416)
134 KOG3579 Predicted E3 ubiquitin 52.8 7.9 0.00017 39.3 1.6 34 289-322 268-305 (352)
135 PF06906 DUF1272: Protein of u 49.8 22 0.00048 27.3 3.2 44 290-335 6-53 (57)
136 PF04216 FdhE: Protein involve 47.2 8.4 0.00018 39.8 0.9 45 287-331 170-219 (290)
137 KOG3005 GIY-YIG type nuclease 45.8 10 0.00022 38.4 1.2 45 289-333 182-242 (276)
138 KOG1924 RhoA GTPase effector D 43.5 1.3E+02 0.0028 35.3 9.3 47 34-87 167-214 (1102)
139 KOG1829 Uncharacterized conser 43.2 8.7 0.00019 43.3 0.3 40 288-330 510-557 (580)
140 PF04710 Pellino: Pellino; In 42.6 8.2 0.00018 41.1 0.0 43 287-332 275-337 (416)
141 KOG1812 Predicted E3 ubiquitin 41.9 13 0.00028 40.1 1.3 43 287-329 304-351 (384)
142 KOG0824 Predicted E3 ubiquitin 40.3 32 0.00069 35.5 3.8 49 287-335 103-152 (324)
143 KOG1815 Predicted E3 ubiquitin 40.3 15 0.00032 40.5 1.5 36 287-322 68-104 (444)
144 PF10571 UPF0547: Uncharacteri 39.7 14 0.0003 23.8 0.7 8 292-299 3-10 (26)
145 PF13901 DUF4206: Domain of un 39.1 16 0.00035 35.7 1.4 39 288-331 151-197 (202)
146 KOG0193 Serine/threonine prote 38.2 2.9E+02 0.0062 31.7 10.9 16 498-513 430-445 (678)
147 PF14569 zf-UDP: Zinc-binding 37.2 43 0.00094 27.5 3.3 47 288-334 8-62 (80)
148 PF14446 Prok-RING_1: Prokaryo 37.0 33 0.0007 26.3 2.4 37 288-328 4-44 (54)
149 PF07106 TBPIP: Tat binding pr 35.3 96 0.0021 29.1 6.1 44 484-527 109-152 (169)
150 smart00132 LIM Zinc-binding do 34.3 30 0.00064 23.2 1.8 35 291-333 1-37 (39)
151 PF12097 DUF3573: Protein of u 34.2 45 0.00098 35.0 3.8 47 484-530 35-82 (383)
152 PLN02189 cellulose synthase 34.0 40 0.00087 40.6 3.8 47 288-334 33-87 (1040)
153 PF00412 LIM: LIM domain; Int 33.5 24 0.00052 26.4 1.3 37 292-336 1-39 (58)
154 COG5109 Uncharacterized conser 33.3 29 0.00062 36.0 2.1 42 288-329 335-382 (396)
155 PF12443 AKNA: AT-hook-contain 32.8 1.3E+02 0.0029 26.3 5.8 37 484-520 45-81 (106)
156 COG1615 Uncharacterized conser 32.8 5.5E+02 0.012 30.1 12.1 50 61-129 167-217 (885)
157 KOG3915 Transcription regulato 32.6 1.2E+02 0.0027 33.1 6.7 62 483-544 499-561 (641)
158 KOG0971 Microtubule-associated 31.9 3.5E+02 0.0076 32.4 10.5 22 496-517 229-250 (1243)
159 PF07191 zinc-ribbons_6: zinc- 30.6 6.5 0.00014 31.6 -2.3 40 290-334 2-41 (70)
160 PLN02400 cellulose synthase 30.5 2.6E+02 0.0057 34.2 9.7 47 288-334 35-89 (1085)
161 PF05297 Herpes_LMP1: Herpesvi 30.4 17 0.00037 37.1 0.0 162 11-237 24-185 (381)
162 PLN02436 cellulose synthase A 30.0 51 0.0011 39.8 3.8 47 288-334 35-89 (1094)
163 KOG1818 Membrane trafficking a 28.5 54 0.0012 37.4 3.5 31 289-319 165-199 (634)
164 KOG0162 Myosin class I heavy c 28.2 5E+02 0.011 30.5 10.7 8 250-257 703-710 (1106)
165 KOG0193 Serine/threonine prote 27.6 3.4E+02 0.0074 31.1 9.4 10 306-315 208-217 (678)
166 KOG2302 T-type voltage-gated C 26.3 1.3E+03 0.028 28.4 14.1 19 174-192 1265-1283(1956)
167 KOG3842 Adaptor protein Pellin 26.3 26 0.00057 36.2 0.6 42 287-331 288-349 (429)
168 PF15290 Syntaphilin: Golgi-lo 26.3 3E+02 0.0065 28.3 7.9 48 496-548 87-137 (305)
169 PF06844 DUF1244: Protein of u 26.3 38 0.00082 26.9 1.3 13 310-322 11-23 (68)
170 KOG4185 Predicted E3 ubiquitin 26.1 13 0.00029 38.2 -1.6 45 288-332 206-265 (296)
171 KOG4193 G protein-coupled rece 26.1 1.1E+03 0.023 27.3 15.0 71 51-122 332-407 (610)
172 KOG3990 Uncharacterized conser 26.0 3.6E+02 0.0078 27.3 8.2 44 481-524 215-265 (305)
173 KOG2231 Predicted E3 ubiquitin 24.8 55 0.0012 37.7 2.8 44 291-334 2-52 (669)
174 TIGR01562 FdhE formate dehydro 24.7 31 0.00067 36.0 0.7 44 288-331 183-232 (305)
175 smart00249 PHD PHD zinc finger 24.3 41 0.00089 23.4 1.1 28 291-318 1-31 (47)
176 PRK03564 formate dehydrogenase 22.5 40 0.00087 35.2 1.1 45 287-331 185-234 (309)
177 PF02318 FYVE_2: FYVE-type zin 22.2 46 0.00099 29.5 1.2 43 288-331 53-102 (118)
178 KOG2113 Predicted RNA binding 22.0 63 0.0014 33.5 2.3 44 288-333 342-386 (394)
179 KOG3726 Uncharacterized conser 22.0 1E+02 0.0022 35.4 4.0 39 289-330 654-696 (717)
180 KOG3088 Secretory carrier memb 21.9 3.1E+02 0.0068 28.3 7.1 10 496-505 69-78 (313)
181 PF01363 FYVE: FYVE zinc finge 21.8 29 0.00062 27.3 -0.1 33 288-320 8-44 (69)
182 PF04977 DivIC: Septum formati 21.2 1.2E+02 0.0026 24.2 3.4 38 486-523 19-58 (80)
183 PLN02638 cellulose synthase A 20.4 99 0.0021 37.6 3.8 47 288-334 16-70 (1079)
No 1
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-53 Score=420.50 Aligned_cols=332 Identities=32% Similarity=0.550 Sum_probs=281.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhccCchhhhhhhhhc-CCchHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHh
Q 008218 2 MRLQTYAGFSFMATLAVVYHAFNSRRQFYPSMVYLST-SKISLVLLMNMGLVIMCILWQLIKKVFLGSLREAEVERLNEQ 80 (573)
Q Consensus 2 ~~~~~y~~~S~~~~~~~v~~a~~~~~~fy~~~v~l~~-s~~~~~il~N~~~~~~~~~~~~~~~~ffG~Lr~~E~e~l~e~ 80 (573)
||+.+|+..++++.++.+|-++++..+-|++.+..++ |+.++++..|++++++.++|+++++++||+||..|.||++|+
T Consensus 1 ~r~i~y~l~~~Vl~~l~~~~~~~~s~t~ys~l~~t~~ls~~hi~i~~~~ill~~~l~~~~l~~llFGsLr~~E~e~~~E~ 80 (491)
T COG5243 1 MRFILYVLASLVLFGLSVLLSLYSSATVYSALVMTSQLSPVHITIGLNVILLLFFLIANALKTLLFGSLRTFELELLYEQ 80 (491)
T ss_pred CceeehhHHHHHHHHHHHHHHHhccceeeeeeeeeeccCcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 6889999999999999999999999999999888887 889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCChhHH--HHHHHHHHHHHHHHHHHHHH
Q 008218 81 SRREIMEILFAITIFRQDFSVSFLAMVTTLLLIKALHWLAQKRVEYIETTPTVPLLSH--IRIVSFMSFLLLVDSLFLYS 158 (573)
Q Consensus 81 ~~~~v~~~lf~i~if~~~~~~~~~~l~~~ll~lk~fh~l~~dR~e~l~~sp~~~~~~h--~R~~~~l~~ll~~d~~~~~~ 158 (573)
+|++++|++|+++.|++++++++..++..|+++|+||||+++|+|-+. ..++....| -|+...+.+|.++|.-++|.
T Consensus 81 l~~tlt~~ll~iS~F~e~i~fs~~~l~~~Ll~~kvfhwil~~R~er~~-~~st~~~~~ifSrfS~~~~lL~ild~~li~~ 159 (491)
T COG5243 81 LWITLTEILLAISVFREAISFSFFMLLSTLLFAKVFHWILSFRTERLQ-IQSTDQRFHIFSRFSCAYFLLSILDASLIYL 159 (491)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999999999999543 223445555 47777788888999777776
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhhheecccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008218 159 SVKFLLQTRQASVSLFFSFEYMILATTTVSIFVKYVFYVSDMLMEGQWERKAVYTFYLELIRDLLHLSMYLCFFLVIFMN 238 (573)
Q Consensus 159 ~~~~~~~~~~~~v~~~f~fE~~il~~~~~~~~~kY~~~~~d~~~~~~we~k~~~~fy~el~~~li~l~~~l~f~~~i~~~ 238 (573)
|+....-. ......+|-+||..+....-+...|--++..|..++. ++|..|.||+|+..+-+.++.|..+++..+..
T Consensus 160 CiSs~~li-D~~~lfL~~c~F~~~ll~l~s~~n~~cV~n~~~~ddD--d~rs~~~f~~~v~y~g~tllays~l~~~~~~~ 236 (491)
T COG5243 160 CISSEHLI-DKSTLFLFVCEFSVLLLNLTSEANKLCVYNYEARDDD--DERSTYLFRLEVCYDGLTLLAYSLLFMYQFPY 236 (491)
T ss_pred HhhhHhhh-hhhHHHHHHHHHHHHHHHHHHhhcccceeeccccccc--ccceeeeeeeehHHHHHHHHHHHHHHHhhccc
Confidence 65421101 1222233444554443333333334455555555444 77888999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhhhccCCCccccccccc-cc------------ceEe
Q 008218 239 YGVPLHLIRELYETFRNFRIRVADYVRYRKITSNMNDRFPDASPEELDASDSTCIICREEM-TT------------AKKL 305 (573)
Q Consensus 239 ~~~pl~li~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~-~~------------~~~l 305 (573)
+.+|++++|+.|..+..+.+|++.+.++++..|++++.+|.++.|++..+|..|.||+|++ .. |++|
T Consensus 237 ~r~Pi~l~r~~~t~~~AL~~~i~~~~~~~r~~kdl~~~~~t~t~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrL 316 (491)
T COG5243 237 VRVPIYLIRQMYTCFYALFRRIREHARFRRATKDLNAMYPTATEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRL 316 (491)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcchhhhhhhcCCCCeEEEecccccCCCCccCcccccCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999994 33 4899
Q ss_pred cccccccHHHHHHHHhcCCCCCCCCccccCCC
Q 008218 306 ICGHLFHVHCLRSWLERQHTCPTCRALVVPPE 337 (573)
Q Consensus 306 ~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~~ 337 (573)
||||.+|.+|++.|++++++||+||.++.-+.
T Consensus 317 pCGHilHl~CLknW~ERqQTCPICr~p~ifd~ 348 (491)
T COG5243 317 PCGHILHLHCLKNWLERQQTCPICRRPVIFDQ 348 (491)
T ss_pred cccceeeHHHHHHHHHhccCCCcccCcccccc
Confidence 99999999999999999999999999965443
No 2
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-35 Score=325.99 Aligned_cols=329 Identities=30% Similarity=0.501 Sum_probs=291.1
Q ss_pred HHHHHHHHHHHHHHHHHhccCchhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHhhH-HHH
Q 008218 7 YAGFSFMATLAVVYHAFNSRRQFYPSMVYLSTSKISLVLLMNMGLVIMCILWQLIKKVFLGSLREAEVERLNEQSR-REI 85 (573)
Q Consensus 7 y~~~S~~~~~~~v~~a~~~~~~fy~~~v~l~~s~~~~~il~N~~~~~~~~~~~~~~~~ffG~Lr~~E~e~l~e~~~-~~v 85 (573)
|.+.+.+++...+++++....|+|++.+++.++..++.++.|++++....+++.++.+|||.|+..|.||+.|++| +.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~sl~~~~~g~l~~~~~e~~~~~l~~~~~ 81 (543)
T KOG0802|consen 2 YVRSSALATIKTIFSAYLGSAQSISTTVLLLSSPTSLAVLLNRALVVLALILLSLQLIFFGALLLSEAEHLSHSLWNLIG 81 (543)
T ss_pred cchhhHHHHHHHHHHHHHhhhcccccceeeecccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999999999999999999999999999999999999999999999999999999999999 666
Q ss_pred HHHHhhh--hhccccchhHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008218 86 MEILFAI--TIFRQDFSVSFLAMVTTLLLIKALHWLAQKRVEYIETTPTVPLLSHIRIVSFMSFLLLVDSLFLYSSVKFL 163 (573)
Q Consensus 86 ~~~lf~i--~if~~~~~~~~~~l~~~ll~lk~fh~l~~dR~e~l~~sp~~~~~~h~R~~~~l~~ll~~d~~~~~~~~~~~ 163 (573)
.+..|.. +.|+..++..|..+++.++++|+|||++++|+++|+.+|....+.|.|+...+..+.+.|...++.++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~s~~~~ 161 (543)
T KOG0802|consen 82 LKYTFLLGYVTFRTVLSELFSLWLLLLLFLHVFHLLASDRLPRLFFSPLITTLNHFRVVSVLFALLIVDGHLVYNSLKTA 161 (543)
T ss_pred HHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6766665 77888777667778888999999999999999999999999999999999998888888988877777767
Q ss_pred HhhccchhHHHHHHHHHHHHHHHHHHHHHhhheecccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Q 008218 164 LQTRQASVSLFFSFEYMILATTTVSIFVKYVFYVSDMLMEGQWERKAVYTFYLELIRDLLHLSMYLCFFLVIFMNYGVPL 243 (573)
Q Consensus 164 ~~~~~~~v~~~f~fE~~il~~~~~~~~~kY~~~~~d~~~~~~we~k~~~~fy~el~~~li~l~~~l~f~~~i~~~~~~pl 243 (573)
+++.+..+.+.+.++.+++...+....++|+++..+-....+|+.+..+.++.+.......+.++++++.+.+..+++++
T Consensus 162 ~~t~~~~~l~~~~~~~~~~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 241 (543)
T KOG0802|consen 162 YRTYGLSMLIELTFPSLLVVFWTALVILQYVLHSTADHIHIRSEDLSLLTFTLIIFGCMTLLVLLIMSAVISLVVHGILL 241 (543)
T ss_pred HHhhhhhheeccchHHHHHHHHHHHHHHHHHHhcchhhcCcccCccceeechhHHHhhhhHHHHHhhhHHHHHHHhHhhh
Confidence 76777777777899999988888888888999988622344679999999999998888888899999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHh-hhhcCCCCChhh--hccCCCccccccccccc-----ceEecccccccHH
Q 008218 244 HLIRELYETF-RNFRIRVADYVRYRKITSN-MNDRFPDASPEE--LDASDSTCIICREEMTT-----AKKLICGHLFHVH 314 (573)
Q Consensus 244 ~li~~~~~~~-~~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~C~IC~~~~~~-----~~~l~C~H~Fh~~ 314 (573)
++.+..+... ....++.....+.++.... +...++.++.++ ....++.|+||+|.+.. ++++||+|.||..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~ 321 (543)
T KOG0802|consen 242 GLVADLYNTPFLEVERRLRELAPLRRVILATLQTGLPGATLEERGLALSDELCIICLEELHSGHNITPKRLPCGHIFHDS 321 (543)
T ss_pred hhhHHHhhhhhhhHHHHccchHHHHHHhhccccccccccChHHhhhhhcCCeeeeechhhccccccccceeecccchHHH
Confidence 9999998887 7777888888888888777 778888888887 77789999999999998 7899999999999
Q ss_pred HHHHHHhcCCCCCCCCccccC
Q 008218 315 CLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 315 Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
|+++|+++.++||+||..+..
T Consensus 322 CL~~W~er~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 322 CLRSWFERQQTCPTCRTVLYD 342 (543)
T ss_pred HHHHHHHHhCcCCcchhhhhc
Confidence 999999999999999995543
No 3
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.3e-13 Score=139.96 Aligned_cols=73 Identities=29% Similarity=0.696 Sum_probs=56.8
Q ss_pred HHHHHHHHhhhhcCCCCChhhhcc--CCCcccccccccccce---EecccccccHHHHHHHHhcCCC-CCCCCccccCC
Q 008218 264 VRYRKITSNMNDRFPDASPEELDA--SDSTCIICREEMTTAK---KLICGHLFHVHCLRSWLERQHT-CPTCRALVVPP 336 (573)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~C~IC~~~~~~~~---~l~C~H~Fh~~Cl~~wl~~~~~-CP~Cr~~i~~~ 336 (573)
.+.+++.+++.+++|..+..+.++ ..+.|+||+|+|++++ .|||+|.||..||++||.+..+ ||+||+++..+
T Consensus 202 ~~~~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 202 LRRNRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred hhhhhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence 455677777777787766544332 1258999999999986 4699999999999999988755 99999987644
No 4
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.20 E-value=4.9e-12 Score=92.67 Aligned_cols=41 Identities=49% Similarity=1.226 Sum_probs=35.4
Q ss_pred Cccccccccccc---ceEecccccccHHHHHHHHhcCCCCCCCC
Q 008218 290 STCIICREEMTT---AKKLICGHLFHVHCLRSWLERQHTCPTCR 330 (573)
Q Consensus 290 ~~C~IC~~~~~~---~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr 330 (573)
++|+||++++.. ...++|||.||.+|+.+|++++.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 479999999964 34789999999999999999999999997
No 5
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=4.9e-11 Score=118.17 Aligned_cols=53 Identities=26% Similarity=0.758 Sum_probs=47.6
Q ss_pred hhccCCCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCccccCC
Q 008218 284 ELDASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (573)
Q Consensus 284 ~~~~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~ 336 (573)
...+.+..|.+|+|...+|-.+||||+|||.||.+|+.....||+||....+.
T Consensus 234 ~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred cCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCc
Confidence 34456789999999999999999999999999999999999999999988654
No 6
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.4e-10 Score=111.98 Aligned_cols=54 Identities=33% Similarity=0.672 Sum_probs=46.3
Q ss_pred ccCCCcccccccccccceEecccccccHHHHHHHHhc---CCCCCCCCccccCCCCC
Q 008218 286 DASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLER---QHTCPTCRALVVPPENG 339 (573)
Q Consensus 286 ~~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~---~~~CP~Cr~~i~~~~~~ 339 (573)
+....+|.||+|.-++|+.+.|||.|||.||.+|++. .+.||+|+..+......
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vv 100 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVV 100 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEE
Confidence 4567899999999999999999999999999999975 34589999998755443
No 7
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.02 E-value=1.6e-10 Score=114.17 Aligned_cols=48 Identities=31% Similarity=0.848 Sum_probs=41.1
Q ss_pred cCCCcccccccccccc--------eEecccccccHHHHHHHHhcCCCCCCCCcccc
Q 008218 287 ASDSTCIICREEMTTA--------KKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~--------~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
..+.+|+||++.+.++ ..++|+|.||..||.+|++++.+||+||.++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 3468999999987653 23579999999999999999999999999874
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.01 E-value=3.4e-10 Score=107.50 Aligned_cols=50 Identities=30% Similarity=0.763 Sum_probs=43.5
Q ss_pred CCCcccccccccccceEecccccccHHHHHHHHhc----------------CCCCCCCCccccCCC
Q 008218 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLER----------------QHTCPTCRALVVPPE 337 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~----------------~~~CP~Cr~~i~~~~ 337 (573)
.+.+|+||++.++++..++|||.||+.||.+|+.. ...||+||.++....
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~ 82 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEAT 82 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhc
Confidence 56899999999999999999999999999999852 247999999996543
No 9
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.99 E-value=2.7e-10 Score=92.83 Aligned_cols=44 Identities=45% Similarity=1.138 Sum_probs=36.0
Q ss_pred cCCCcccccccccccc-------------eEecccccccHHHHHHHHhcCCCCCCCC
Q 008218 287 ASDSTCIICREEMTTA-------------KKLICGHLFHVHCLRSWLERQHTCPTCR 330 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~-------------~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr 330 (573)
..++.|+||++.+.++ ...+|||.||..||.+|++.+.+||+||
T Consensus 17 ~~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 17 IADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp SCCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CcCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 3456799999999432 2347999999999999999999999998
No 10
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.4e-09 Score=107.87 Aligned_cols=48 Identities=35% Similarity=0.888 Sum_probs=41.8
Q ss_pred CCCcccccccccccce---EecccccccHHHHHHHHh-cCCCCCCCCccccC
Q 008218 288 SDSTCIICREEMTTAK---KLICGHLFHVHCLRSWLE-RQHTCPTCRALVVP 335 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~---~l~C~H~Fh~~Cl~~wl~-~~~~CP~Cr~~i~~ 335 (573)
.+-+|+||++++...+ .|||.|.||..|+++|+. .+..||+||.++++
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 3578999999998765 569999999999999997 57789999999865
No 11
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=98.81 E-value=1.8e-08 Score=103.27 Aligned_cols=60 Identities=30% Similarity=0.559 Sum_probs=50.1
Q ss_pred cCCCcccccccccccceEecccccccHHHHHHHHhc--CCCCCCCCccccCCCCCCCCCCcC
Q 008218 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLER--QHTCPTCRALVVPPENGASTAGVQ 346 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~--~~~CP~Cr~~i~~~~~~~~~~~~~ 346 (573)
..-..|.||-|.-++.+.-||||..|..|+..|... .++||.||.+|...+.........
T Consensus 367 sTFeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~viid~F~p 428 (563)
T KOG1785|consen 367 STFELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVIIDPFDP 428 (563)
T ss_pred chHHHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccceeeeccCC
Confidence 345679999999999889999999999999999854 578999999999887766555433
No 12
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.81 E-value=2.5e-09 Score=80.49 Aligned_cols=46 Identities=39% Similarity=0.820 Sum_probs=41.1
Q ss_pred CCcccccccccccceEeccccc-ccHHHHHHHHhcCCCCCCCCcccc
Q 008218 289 DSTCIICREEMTTAKKLICGHL-FHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~-Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
+..|.||++...+...+||||. ||..|+.+|++....||+||+++.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4689999999999889999999 999999999999999999999874
No 13
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.77 E-value=3.5e-09 Score=75.41 Aligned_cols=38 Identities=37% Similarity=0.964 Sum_probs=33.8
Q ss_pred ccccccccccc-eEecccccccHHHHHHHHhcCCCCCCC
Q 008218 292 CIICREEMTTA-KKLICGHLFHVHCLRSWLERQHTCPTC 329 (573)
Q Consensus 292 C~IC~~~~~~~-~~l~C~H~Fh~~Cl~~wl~~~~~CP~C 329 (573)
|+||++.+.++ ..++|||.||.+|+.+|++.+..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999999 578999999999999999988899998
No 14
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.71 E-value=7.6e-09 Score=74.85 Aligned_cols=38 Identities=34% Similarity=0.851 Sum_probs=30.7
Q ss_pred ccccccccccceEecccccccHHHHHHHHhcC----CCCCCC
Q 008218 292 CIICREEMTTAKKLICGHLFHVHCLRSWLERQ----HTCPTC 329 (573)
Q Consensus 292 C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~----~~CP~C 329 (573)
|+||++.+++|+.|+|||.||..||.+|.+.. ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999999999998653 369988
No 15
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=6.3e-07 Score=87.94 Aligned_cols=50 Identities=38% Similarity=0.928 Sum_probs=40.6
Q ss_pred cCCCcccccccccccc----------eEecccccccHHHHHHHH--hcCCCCCCCCccccCC
Q 008218 287 ASDSTCIICREEMTTA----------KKLICGHLFHVHCLRSWL--ERQHTCPTCRALVVPP 336 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~----------~~l~C~H~Fh~~Cl~~wl--~~~~~CP~Cr~~i~~~ 336 (573)
.+|..|++|-..+... .+|.|+|+||..||+.|. .+.++||.|+..+...
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 3578999998776532 378999999999999997 4577999999888543
No 16
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.68 E-value=1.5e-08 Score=73.34 Aligned_cols=43 Identities=42% Similarity=1.066 Sum_probs=37.0
Q ss_pred cccccccccccceEec-ccccccHHHHHHHHhc-CCCCCCCCccc
Q 008218 291 TCIICREEMTTAKKLI-CGHLFHVHCLRSWLER-QHTCPTCRALV 333 (573)
Q Consensus 291 ~C~IC~~~~~~~~~l~-C~H~Fh~~Cl~~wl~~-~~~CP~Cr~~i 333 (573)
.|+||++.+..+..++ |||.||..|++.|++. ...||.||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 5999999996666654 9999999999999987 77899999753
No 17
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.67 E-value=1.7e-08 Score=79.55 Aligned_cols=46 Identities=22% Similarity=0.319 Sum_probs=42.5
Q ss_pred CcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCccccC
Q 008218 290 STCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 290 ~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
..|+||.+.+++|..++|||+|+..||.+|++.+.+||.|+.++..
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 4799999999999999999999999999999888899999988743
No 18
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.59 E-value=2.6e-08 Score=82.17 Aligned_cols=47 Identities=38% Similarity=0.893 Sum_probs=37.6
Q ss_pred CCCcccccccccccce---Ee----------cccccccHHHHHHHHhc---CCCCCCCCcccc
Q 008218 288 SDSTCIICREEMTTAK---KL----------ICGHLFHVHCLRSWLER---QHTCPTCRALVV 334 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~---~l----------~C~H~Fh~~Cl~~wl~~---~~~CP~Cr~~i~ 334 (573)
.++.|.||+..|+... +. .|+|.||..||.+|+++ +.+||+||++..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 4789999999997311 11 59999999999999975 467999999764
No 19
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2.9e-08 Score=92.01 Aligned_cols=50 Identities=28% Similarity=0.737 Sum_probs=43.0
Q ss_pred cCCCcccccccccccce--EecccccccHHHHHHHHhcCCCCCCCCccccCC
Q 008218 287 ASDSTCIICREEMTTAK--KLICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~--~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~ 336 (573)
+....|+||++.+.+.. -+.|||+||..||+.-++....||+||+.|..+
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 34578999999998654 478999999999999999999999999987644
No 20
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.8e-07 Score=98.37 Aligned_cols=49 Identities=31% Similarity=0.852 Sum_probs=39.2
Q ss_pred cCCCcccccccccccc-----------------eEecccccccHHHHHHHHhc-CCCCCCCCccccC
Q 008218 287 ASDSTCIICREEMTTA-----------------KKLICGHLFHVHCLRSWLER-QHTCPTCRALVVP 335 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~-----------------~~l~C~H~Fh~~Cl~~wl~~-~~~CP~Cr~~i~~ 335 (573)
+...+|+||+.+.+-. -.+||.|+||..|+..|++. +-.||+||+++.+
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 4567899999887520 13599999999999999984 5589999998854
No 21
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.54 E-value=4.3e-08 Score=70.48 Aligned_cols=38 Identities=47% Similarity=1.047 Sum_probs=34.8
Q ss_pred ccccccccccce-EecccccccHHHHHHHHh--cCCCCCCC
Q 008218 292 CIICREEMTTAK-KLICGHLFHVHCLRSWLE--RQHTCPTC 329 (573)
Q Consensus 292 C~IC~~~~~~~~-~l~C~H~Fh~~Cl~~wl~--~~~~CP~C 329 (573)
|+||++.+.++. .++|||.||..|+++|++ ....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999998 789999999999999998 45679998
No 22
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=4.6e-08 Score=96.14 Aligned_cols=50 Identities=40% Similarity=0.897 Sum_probs=44.8
Q ss_pred CCCcccccccccccceEecccccccHHHHHH-HHhcCCC-CCCCCccccCCC
Q 008218 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRS-WLERQHT-CPTCRALVVPPE 337 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~-wl~~~~~-CP~Cr~~i~~~~ 337 (573)
.+..|+||++....+..++|||+||+.||.. |-.++.. ||+||+.+.+.+
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 4778999999999999999999999999999 9877766 999999886543
No 23
>PHA02926 zinc finger-like protein; Provisional
Probab=98.48 E-value=6.7e-08 Score=92.80 Aligned_cols=48 Identities=27% Similarity=0.737 Sum_probs=37.7
Q ss_pred cCCCccccccccccc---------ceEecccccccHHHHHHHHhcC------CCCCCCCcccc
Q 008218 287 ASDSTCIICREEMTT---------AKKLICGHLFHVHCLRSWLERQ------HTCPTCRALVV 334 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~---------~~~l~C~H~Fh~~Cl~~wl~~~------~~CP~Cr~~i~ 334 (573)
+.+.+|+||+|..-+ +...+|+|.||..||+.|.+.+ .+||+||....
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 457899999998632 2234899999999999999742 35999998764
No 24
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.48 E-value=9.8e-08 Score=66.62 Aligned_cols=38 Identities=47% Similarity=1.128 Sum_probs=34.7
Q ss_pred ccccccccccceEecccccccHHHHHHHHh-cCCCCCCC
Q 008218 292 CIICREEMTTAKKLICGHLFHVHCLRSWLE-RQHTCPTC 329 (573)
Q Consensus 292 C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~-~~~~CP~C 329 (573)
|+||++....+..++|||.||..|++.|++ ....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 889999988888999999999999999998 56679988
No 25
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=2.4e-07 Score=88.41 Aligned_cols=76 Identities=26% Similarity=0.565 Sum_probs=61.7
Q ss_pred CCCcccccccccccce--EecccccccHHHHHHHHhc--------CCCCCCCCccccCCCCCCCCCCcCCCCCCCCCCCC
Q 008218 288 SDSTCIICREEMTTAK--KLICGHLFHVHCLRSWLER--------QHTCPTCRALVVPPENGASTAGVQHGQRPDTHQSG 357 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~--~l~C~H~Fh~~Cl~~wl~~--------~~~CP~Cr~~i~~~~~~~~~~~~~~~~~~~~~~~~ 357 (573)
.+..|..|-..+..++ +|.|.|.|||+|+++|... ..+||.|..+|+++.+..++.. +..++.
T Consensus 49 Y~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~NlvsPva-------~aLre~ 121 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLVSPVA-------EALREQ 121 (299)
T ss_pred CCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccccchhH-------HHHHHH
Confidence 4568999999998775 6789999999999999854 5579999999999988888776 556666
Q ss_pred CCCCCCCCCCCCC
Q 008218 358 TATANTASQGSAN 370 (573)
Q Consensus 358 ~~~~~~~~~~~~~ 370 (573)
....+|++.+-.-
T Consensus 122 L~qvNWaRagLGL 134 (299)
T KOG3970|consen 122 LKQVNWARAGLGL 134 (299)
T ss_pred HHhhhHHhhccCC
Confidence 7777888776433
No 26
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.42 E-value=1.2e-07 Score=100.44 Aligned_cols=48 Identities=31% Similarity=0.647 Sum_probs=44.3
Q ss_pred CCCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCccccC
Q 008218 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
....|+||.+.+..+..++|||.||..|+..|+.....||+||..+..
T Consensus 25 ~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 467999999999999999999999999999999888889999998754
No 27
>PF13705 TRC8_N: TRC8 N-terminal domain
Probab=98.36 E-value=3e-06 Score=91.40 Aligned_cols=177 Identities=22% Similarity=0.340 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHhcccCcHHHHHHHHHhhHHHHHHHHhhhhhccccch-------hHHHHHHHHHHHH
Q 008218 43 LVLLMNMGLVIMCILWQL--IKKVFLGSLREAEVERLNEQSRREIMEILFAITIFRQDFS-------VSFLAMVTTLLLI 113 (573)
Q Consensus 43 ~~il~N~~~~~~~~~~~~--~~~~ffG~Lr~~E~e~l~e~~~~~v~~~lf~i~if~~~~~-------~~~~~l~~~ll~l 113 (573)
...+.-++.++.++...+ ..+.+.|.=++.|-++ ..++--.+|.+..++..+. .--+....++++.
T Consensus 279 ~~sllgms~vvS~ia~~i~~~~~~~l~g~~~~~~~~-----~G~~~~vlf~iLalQTGL~~l~~~~R~~~L~~~l~lv~t 353 (508)
T PF13705_consen 279 PLSLLGMSFVVSYIAHYIGLLCQFFLGGYDEFEDKN-----RGTTEAVLFFILALQTGLLGLKPEQRLVRLSRNLFLVLT 353 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccc-----cchHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHH
Confidence 344555556655554332 3455667666655444 2233335666666765432 1122233344445
Q ss_pred HHHHHHH---hhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccchhHHHHHHHHHHHHHHHHHH
Q 008218 114 KALHWLA---QKRVEYIETTPTVPLLSHIRIVSFMSFLLLVDSLFLYSSVKF-LLQTRQASVSLFFSFEYMILATTTVSI 189 (573)
Q Consensus 114 k~fh~l~---~dR~e~l~~sp~~~~~~h~R~~~~l~~ll~~d~~~~~~~~~~-~~~~~~~~v~~~f~fE~~il~~~~~~~ 189 (573)
..+|.+. .-.+-.|..+.+.++++|+|.+++..+|+++..++.|....+ .+++|...+.. |+.|-+ +..+.+
T Consensus 354 a~Lh~~~ei~~pvLmsL~As~~~s~~rH~R~L~v~~~Ll~~P~~~~y~l~~~~~i~tWll~v~s-~~~~t~---vkv~~s 429 (508)
T PF13705_consen 354 ALLHSLHEIVDPVLMSLSASHNRSFWRHFRALSVCLFLLVFPLYLSYYLWSFFPIDTWLLIVTS-FCVETI---VKVLGS 429 (508)
T ss_pred HHHHHHHHHhHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH-HHHHHH---HHHHHH
Confidence 5555555 444455667888899999999999999999999888765543 35555544432 444444 345556
Q ss_pred HHHhhheecccccccccccchhhHHHHHHHHHHHHHHHH
Q 008218 190 FVKYVFYVSDMLMEGQWERKAVYTFYLELIRDLLHLSMY 228 (573)
Q Consensus 190 ~~kY~~~~~d~~~~~~we~k~~~~fy~el~~~li~l~~~ 228 (573)
+..|.+++.|...+..||+.++|+||++.+...++++.-
T Consensus 430 l~iY~Lf~vd~~~~~~WE~LDD~VYyv~a~~~~~EFl~~ 468 (508)
T PF13705_consen 430 LAIYILFMVDARREEPWEKLDDYVYYVRATGRVLEFLVG 468 (508)
T ss_pred HHHHHHHHHHhhcccchhhcccEEEEEeccCcEeeehhh
Confidence 678999999999999999999999999998888776443
No 28
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.27 E-value=5.1e-07 Score=66.04 Aligned_cols=41 Identities=34% Similarity=0.859 Sum_probs=34.9
Q ss_pred cccccccccc---cceEecccccccHHHHHHHHhcCCCCCCCCc
Q 008218 291 TCIICREEMT---TAKKLICGHLFHVHCLRSWLERQHTCPTCRA 331 (573)
Q Consensus 291 ~C~IC~~~~~---~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~ 331 (573)
.|.||++.+. .+..++|||.||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4899999992 3457799999999999999866778999985
No 29
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.23 E-value=5.3e-07 Score=65.39 Aligned_cols=35 Identities=40% Similarity=0.977 Sum_probs=22.3
Q ss_pred cccccccccc----ceEecccccccHHHHHHHHhcC----CCCC
Q 008218 292 CIICREEMTT----AKKLICGHLFHVHCLRSWLERQ----HTCP 327 (573)
Q Consensus 292 C~IC~~~~~~----~~~l~C~H~Fh~~Cl~~wl~~~----~~CP 327 (573)
|+||.| +.+ |+.|+|||+||.+|++++.+.+ ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 877 8899999999999999999753 2476
No 30
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.21 E-value=6e-07 Score=73.16 Aligned_cols=47 Identities=28% Similarity=0.417 Sum_probs=38.8
Q ss_pred CCcccccccccccceEecccccccHHHHHHHHhc-CCCCCCCCccccC
Q 008218 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLER-QHTCPTCRALVVP 335 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~-~~~CP~Cr~~i~~ 335 (573)
...|+||.+.|.+|+.+||||.|...||..|++. +.+||.|+.++..
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred ccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 4689999999999999999999999999999988 8899999988754
No 31
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=6.1e-07 Score=95.72 Aligned_cols=52 Identities=27% Similarity=0.630 Sum_probs=44.6
Q ss_pred CCcccccccccccceEecccccccHHHHHHHHhc-----CCCCCCCCccccCCCCCC
Q 008218 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLER-----QHTCPTCRALVVPPENGA 340 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~-----~~~CP~Cr~~i~~~~~~~ 340 (573)
+..|+||++....+..+.|||+||..||...+.. ...||+||..|...+-.+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~p 242 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLP 242 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceee
Confidence 7899999999999999999999999999997754 346999999998755433
No 32
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=5.1e-07 Score=71.86 Aligned_cols=48 Identities=46% Similarity=0.917 Sum_probs=37.6
Q ss_pred cCCCcccccccccccc---eEe----------cccccccHHHHHHHHhc---CCCCCCCCcccc
Q 008218 287 ASDSTCIICREEMTTA---KKL----------ICGHLFHVHCLRSWLER---QHTCPTCRALVV 334 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~---~~l----------~C~H~Fh~~Cl~~wl~~---~~~CP~Cr~~i~ 334 (573)
..++.|.||+-.|+.. .++ -|.|.||..||.+|+.. +..||+||++..
T Consensus 18 ~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 18 APDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3566999999998742 133 39999999999999964 456999998753
No 33
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.18 E-value=5.5e-07 Score=90.86 Aligned_cols=48 Identities=31% Similarity=0.599 Sum_probs=44.5
Q ss_pred CCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCccccCC
Q 008218 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~ 336 (573)
-..|-||.|.|..|..+||+|.||.-||+..|..+..||.|+.++.+.
T Consensus 23 lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 23 LLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred HHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchh
Confidence 458999999999999999999999999999999999999999887654
No 34
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.18 E-value=5.9e-07 Score=93.99 Aligned_cols=45 Identities=36% Similarity=0.914 Sum_probs=37.8
Q ss_pred CCCcccccccccccce----EecccccccHHHHHHHHhcCCCCCCCCcccc
Q 008218 288 SDSTCIICREEMTTAK----KLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~----~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
.-.+|++|+|.|.... ...|.|.||..|+..| ...+||+||....
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w--~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW--WDSSCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhc--ccCcChhhhhhcC
Confidence 4579999999998654 4579999999999999 4568999998665
No 35
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.15 E-value=9e-07 Score=87.60 Aligned_cols=46 Identities=33% Similarity=0.668 Sum_probs=42.9
Q ss_pred CCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCcccc
Q 008218 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
-..|-||-+.+..|..++|||.||.-||+..|..+..||+||.+-.
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHH
Confidence 4589999999999999999999999999999999999999998653
No 36
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.07 E-value=2.2e-06 Score=68.92 Aligned_cols=47 Identities=34% Similarity=0.844 Sum_probs=36.6
Q ss_pred CCcccccccccccc-----------eE--e---cccccccHHHHHHHHhcCCCCCCCCccccC
Q 008218 289 DSTCIICREEMTTA-----------KK--L---ICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 289 ~~~C~IC~~~~~~~-----------~~--l---~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
-+.|+||+..+... .. + .|.|.||..||.+||..+..||+||++...
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 36788887766431 11 1 499999999999999999999999987643
No 37
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=5.1e-06 Score=85.42 Aligned_cols=49 Identities=31% Similarity=0.650 Sum_probs=44.0
Q ss_pred cCCCcccccccccccceEeccccc-ccHHHHHHHHhcCCCCCCCCccccC
Q 008218 287 ASDSTCIICREEMTTAKKLICGHL-FHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~-Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
+...+|.||+.+-++...|||.|. .|..|.+.---+++.||+||+++..
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 457899999999999999999996 9999999987788999999998853
No 38
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.93 E-value=3.2e-06 Score=94.86 Aligned_cols=48 Identities=29% Similarity=0.843 Sum_probs=38.7
Q ss_pred cCCCcccccccccc-cceEec------ccccccHHHHHHHHhc--CCCCCCCCcccc
Q 008218 287 ASDSTCIICREEMT-TAKKLI------CGHLFHVHCLRSWLER--QHTCPTCRALVV 334 (573)
Q Consensus 287 ~~~~~C~IC~~~~~-~~~~l~------C~H~Fh~~Cl~~wl~~--~~~CP~Cr~~i~ 334 (573)
++-.+|+||+..+. ..+.+| |+|.||..|+.+|+.+ +++||+||..+.
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 46689999999887 333443 9999999999999976 457999997764
No 39
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=6.4e-06 Score=69.49 Aligned_cols=45 Identities=31% Similarity=0.882 Sum_probs=35.3
Q ss_pred CCccccccccccc-------------ce-Ee---cccccccHHHHHHHHhcCCCCCCCCccc
Q 008218 289 DSTCIICREEMTT-------------AK-KL---ICGHLFHVHCLRSWLERQHTCPTCRALV 333 (573)
Q Consensus 289 ~~~C~IC~~~~~~-------------~~-~l---~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i 333 (573)
-+.|+||+.-+-+ .. .. .|.|.||..||.+|++..+.||+|.++-
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 4789999865421 11 11 4999999999999999999999998754
No 40
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=4.2e-06 Score=62.33 Aligned_cols=48 Identities=27% Similarity=0.562 Sum_probs=39.5
Q ss_pred cCCCcccccccccccceEeccccc-ccHHHHHHHH-hcCCCCCCCCcccc
Q 008218 287 ASDSTCIICREEMTTAKKLICGHL-FHVHCLRSWL-ERQHTCPTCRALVV 334 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~-Fh~~Cl~~wl-~~~~~CP~Cr~~i~ 334 (573)
+.+++|.||+|.-.+.+.-.|||. .|..|-.+-. ..+..||+||+++.
T Consensus 5 ~~~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 5 QWSDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 456899999999877777799996 8999976644 46889999999874
No 41
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.83 E-value=3.6e-06 Score=67.95 Aligned_cols=46 Identities=28% Similarity=0.725 Sum_probs=23.2
Q ss_pred CCcccccccccccceEe--------cccccccHHHHHHHHhc-----------CCCCCCCCcccc
Q 008218 289 DSTCIICREEMTTAKKL--------ICGHLFHVHCLRSWLER-----------QHTCPTCRALVV 334 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l--------~C~H~Fh~~Cl~~wl~~-----------~~~CP~Cr~~i~ 334 (573)
+.+|.||++...+...+ .|++.||..||.+|+.. ..+||.|+.+|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 45899999986522211 59999999999999963 125999999874
No 42
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=1.5e-05 Score=81.37 Aligned_cols=44 Identities=39% Similarity=0.741 Sum_probs=39.8
Q ss_pred cCCCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCC
Q 008218 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCR 330 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr 330 (573)
.....|+||++.+..++.+||||.||..|+..+......||.||
T Consensus 11 ~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 11 QEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred cccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccC
Confidence 45679999999999998899999999999999888556799999
No 43
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.67 E-value=3e-05 Score=79.33 Aligned_cols=49 Identities=22% Similarity=0.646 Sum_probs=36.6
Q ss_pred CCcccccccc-cccce-E-e--cccccccHHHHHHHH-hcCCCCCCCCccccCCC
Q 008218 289 DSTCIICREE-MTTAK-K-L--ICGHLFHVHCLRSWL-ERQHTCPTCRALVVPPE 337 (573)
Q Consensus 289 ~~~C~IC~~~-~~~~~-~-l--~C~H~Fh~~Cl~~wl-~~~~~CP~Cr~~i~~~~ 337 (573)
+..|++|..+ +..+. + + +|||.||..|++..+ .....||.|+.++....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 4689999985 33333 2 2 799999999999955 44568999998886543
No 44
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.63 E-value=3.4e-05 Score=57.70 Aligned_cols=40 Identities=30% Similarity=0.814 Sum_probs=30.5
Q ss_pred cccccccccc--cceEeccc-----ccccHHHHHHHHhc--CCCCCCCC
Q 008218 291 TCIICREEMT--TAKKLICG-----HLFHVHCLRSWLER--QHTCPTCR 330 (573)
Q Consensus 291 ~C~IC~~~~~--~~~~l~C~-----H~Fh~~Cl~~wl~~--~~~CP~Cr 330 (573)
.|.||++..+ ++...||. |.+|..|+++|+.. ..+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998333 33466885 89999999999955 44799995
No 45
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=2.2e-05 Score=78.78 Aligned_cols=49 Identities=24% Similarity=0.582 Sum_probs=42.4
Q ss_pred CCCcccccccccccceEecccccccHHHHHHHHhc-CCCCCCCCccccCC
Q 008218 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLER-QHTCPTCRALVVPP 336 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~-~~~CP~Cr~~i~~~ 336 (573)
...+|+||+.....|..++|+|.||..||+.-... ..+|++||.++...
T Consensus 6 ~~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 6 KKKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cCCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 36789999999999999999999999999986655 45699999998653
No 46
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.55 E-value=2.2e-05 Score=61.11 Aligned_cols=46 Identities=26% Similarity=0.596 Sum_probs=25.0
Q ss_pred CCcccccccccccceEe-cccccccHHHHHHHHhcCCCCCCCCccccCC
Q 008218 289 DSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~ 336 (573)
...|++|.+.++.|..+ .|.|.||..|+..-+. ..||+|+.+....
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~q 53 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQ 53 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-S
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCChHHHH
Confidence 35799999999999865 8999999999988654 3499999876543
No 47
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=4.2e-05 Score=78.29 Aligned_cols=49 Identities=29% Similarity=0.599 Sum_probs=41.5
Q ss_pred CCCcccccccccccceEe-cccccccHHHHHHHHhc-CCCCCCCCccccCC
Q 008218 288 SDSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLER-QHTCPTCRALVVPP 336 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~-~~~CP~Cr~~i~~~ 336 (573)
.+..|.||++.++....+ .|.|.||.+||..-+.. ++.||.||+.+...
T Consensus 42 ~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 467899999999887766 59999999999988855 67899999988644
No 48
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=8.6e-05 Score=76.68 Aligned_cols=42 Identities=38% Similarity=1.046 Sum_probs=32.0
Q ss_pred CCcccccccccccceEe----cccccccHHHHHHHHhcC---CCCCCCC
Q 008218 289 DSTCIICREEMTTAKKL----ICGHLFHVHCLRSWLERQ---HTCPTCR 330 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l----~C~H~Fh~~Cl~~wl~~~---~~CP~Cr 330 (573)
...|.||.+-......+ .|||+||..|+..|++.. .+||.|+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 35799994444333333 499999999999999863 4799999
No 49
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=8.4e-05 Score=83.35 Aligned_cols=48 Identities=31% Similarity=0.689 Sum_probs=41.5
Q ss_pred CCCcccccccccccceEecccccccHHHHHHHHh-cCCCCCCCCccccC
Q 008218 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLE-RQHTCPTCRALVVP 335 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~-~~~~CP~Cr~~i~~ 335 (573)
.-..|+.|-+..++...+.|||+||..|+..-+. ++..||.|.+...+
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 4568999998888888899999999999999985 57789999887644
No 50
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00084 Score=66.77 Aligned_cols=50 Identities=30% Similarity=0.632 Sum_probs=40.9
Q ss_pred hccCCCcccccccccccceEe-cccccccHHHHHHHHhc--CCCCCCCCcccc
Q 008218 285 LDASDSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLER--QHTCPTCRALVV 334 (573)
Q Consensus 285 ~~~~~~~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~--~~~CP~Cr~~i~ 334 (573)
..+.+.+|++|-+.-..|-.. +|||.||..|+..=... ..+||.|..++.
T Consensus 235 ~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 346788999999998888755 69999999999987654 468999987664
No 51
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.00017 Score=76.86 Aligned_cols=49 Identities=31% Similarity=0.730 Sum_probs=45.3
Q ss_pred cCCCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCccccC
Q 008218 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
..+..|.||...+..|..+||||.||..||.+-+.+...||.||.++..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 5788999999999999999999999999999988888889999998875
No 52
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.03 E-value=0.00092 Score=66.89 Aligned_cols=46 Identities=28% Similarity=0.681 Sum_probs=38.8
Q ss_pred CCcccccccccccceEec-ccccccHHHHHHHH-hcCCCCCCCCc-ccc
Q 008218 289 DSTCIICREEMTTAKKLI-CGHLFHVHCLRSWL-ERQHTCPTCRA-LVV 334 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~-C~H~Fh~~Cl~~wl-~~~~~CP~Cr~-~i~ 334 (573)
...|+.|-..+..+.++| |+|.||.+||..-| +....||.|.. ++.
T Consensus 274 ~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvl 322 (427)
T COG5222 274 SLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVL 322 (427)
T ss_pred cccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccch
Confidence 368999999999999995 89999999999766 67789999944 443
No 53
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.00043 Score=72.19 Aligned_cols=46 Identities=41% Similarity=0.972 Sum_probs=37.5
Q ss_pred CCCcccccccccccce-----EecccccccHHHHHHHHhc--CCCCCCCCccc
Q 008218 288 SDSTCIICREEMTTAK-----KLICGHLFHVHCLRSWLER--QHTCPTCRALV 333 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~-----~l~C~H~Fh~~Cl~~wl~~--~~~CP~Cr~~i 333 (573)
...+|+||++.+..+. .+.|||.|..+||++|+.+ ...||.|..+-
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 3568999999998753 4689999999999999953 34699997643
No 54
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.94 E-value=0.001 Score=68.97 Aligned_cols=46 Identities=37% Similarity=0.928 Sum_probs=36.9
Q ss_pred cCCCcccccccccccc----eEecccccccHHHHHHHHhcC--CCCCCCCcc
Q 008218 287 ASDSTCIICREEMTTA----KKLICGHLFHVHCLRSWLERQ--HTCPTCRAL 332 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~----~~l~C~H~Fh~~Cl~~wl~~~--~~CP~Cr~~ 332 (573)
+.+..|..|-+.+-.. ..|||.|+||..|+.+.++++ .+||.||+-
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 3467899999987532 257999999999999999764 579999943
No 55
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.00047 Score=72.11 Aligned_cols=48 Identities=31% Similarity=0.779 Sum_probs=38.2
Q ss_pred cCCCcccccccccccce-----E---ecccccccHHHHHHHH--hc-----CCCCCCCCcccc
Q 008218 287 ASDSTCIICREEMTTAK-----K---LICGHLFHVHCLRSWL--ER-----QHTCPTCRALVV 334 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~-----~---l~C~H~Fh~~Cl~~wl--~~-----~~~CP~Cr~~i~ 334 (573)
..+..|.||+|...+.. . .+|.|.||..|++.|- .+ ...||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 45789999999876543 2 4699999999999998 34 467999997653
No 56
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.68 E-value=0.00069 Score=64.04 Aligned_cols=46 Identities=22% Similarity=0.499 Sum_probs=41.7
Q ss_pred CCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCcccc
Q 008218 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
...|.||-++++.|+.+.|||.||..|.-.-.+....|-.|.+...
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~ 241 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATY 241 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhc
Confidence 4689999999999999999999999999998888899999976543
No 57
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.0021 Score=72.66 Aligned_cols=69 Identities=22% Similarity=0.535 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhhhcCCCCChhhhccCCCcccccccccccce-EecccccccHHHHHHHHhcCCCCCCCCccc
Q 008218 262 DYVRYRKITSNMNDRFPDASPEELDASDSTCIICREEMTTAK-KLICGHLFHVHCLRSWLERQHTCPTCRALV 333 (573)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~-~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i 333 (573)
...+|++-++++++.+.+....+..-....|..|.-.++-|. ...|||.||..|+. +....||.|+.+.
T Consensus 813 ~Ie~yk~~i~e~r~~l~~lr~sa~i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 813 AIEVYKKDIEEKRQELETLRTSAQIFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccceeeeeeecccCCccccceeeeecccHHHHHhhc---cCcccCCccchhh
Confidence 334566777777776666554443334568999999999875 67999999999997 4567899998733
No 58
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.59 E-value=0.00095 Score=71.80 Aligned_cols=52 Identities=29% Similarity=0.659 Sum_probs=45.5
Q ss_pred cCCCcccccccccccceE-ecccccccHHHHHHHHhcCCCCCCCCccccCCCC
Q 008218 287 ASDSTCIICREEMTTAKK-LICGHLFHVHCLRSWLERQHTCPTCRALVVPPEN 338 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~-l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~~~ 338 (573)
..+..|++|...+.+|.. +.|||.||..|+..|+..+..||.|+..+...+.
T Consensus 19 ~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEE 71 (391)
T ss_pred cccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhc
Confidence 346789999999999998 5999999999999999999999999887765443
No 59
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.55 E-value=0.00061 Score=75.85 Aligned_cols=31 Identities=29% Similarity=0.544 Sum_probs=27.6
Q ss_pred EecccccccHHHHHHHHhcCCCCCCCCcccc
Q 008218 304 KLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 304 ~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
.-+|+|.||..|+..|-...++||+||....
T Consensus 141 ~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 141 EKHTAHYFCEECVGSWSRCAQTCPVDRGEFG 171 (1134)
T ss_pred ccccccccHHHHhhhhhhhcccCchhhhhhh
Confidence 3479999999999999999999999998653
No 60
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.44 E-value=0.0013 Score=70.52 Aligned_cols=50 Identities=22% Similarity=0.567 Sum_probs=42.7
Q ss_pred cCCCcccccccccccceEecccccccHHHHHHHHhc-----CCCCCCCCccccCC
Q 008218 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLER-----QHTCPTCRALVVPP 336 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~-----~~~CP~Cr~~i~~~ 336 (573)
.+...|.+|-|.-++.....|.|.||..|++++... +-+||.|...+.-+
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 456789999999999999999999999999998864 45899998877543
No 61
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0036 Score=64.88 Aligned_cols=45 Identities=27% Similarity=0.665 Sum_probs=34.8
Q ss_pred cCCCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCcccc
Q 008218 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
...+.|.||.+..++.+.+||||+-| |..-- +.-.+||+||+.|.
T Consensus 303 ~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred CCCCceEEecCCccceeeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 45678999999999999999999866 54332 22345999998774
No 62
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.00088 Score=66.99 Aligned_cols=42 Identities=31% Similarity=0.748 Sum_probs=35.6
Q ss_pred CCcccccccccccceEeccccc-ccHHHHHHHHhcCCCCCCCCcccc
Q 008218 289 DSTCIICREEMTTAKKLICGHL-FHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~-Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
+..|+||+|.-.+...|+|||. -|.+|-+.. +.||+||+.+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM----NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc----ccCchHHHHHH
Confidence 6789999999999999999995 788886543 47999998764
No 63
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.0015 Score=65.73 Aligned_cols=49 Identities=22% Similarity=0.453 Sum_probs=43.5
Q ss_pred CCCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCccccCC
Q 008218 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~ 336 (573)
-.+.|-||...+..|+++.|+|.||..|...-++....|++|.+.....
T Consensus 240 ~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 240 LPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGS 288 (313)
T ss_pred CCccccccccccccchhhcCCceeehhhhccccccCCcceecccccccc
Confidence 3567999999999999999999999999998888889999998876543
No 64
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.0039 Score=63.88 Aligned_cols=49 Identities=24% Similarity=0.451 Sum_probs=44.5
Q ss_pred cCCCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCccccC
Q 008218 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
..++.|+||+..-......||+|.-|..||.+-+...+.|=.|+..+..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 5678999999988888889999999999999999999999999998753
No 65
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.21 E-value=0.0027 Score=49.10 Aligned_cols=42 Identities=24% Similarity=0.564 Sum_probs=29.6
Q ss_pred cCCCcccccccccccceEe-cccccccHHHHHHHHhc--CCCCCC
Q 008218 287 ASDSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLER--QHTCPT 328 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~--~~~CP~ 328 (573)
..+..|+|....+++|++- .|||.|-.+.|.+|+++ ...||.
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 3467899999999999875 89999999999999944 346998
No 66
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.01 E-value=0.0021 Score=65.72 Aligned_cols=47 Identities=30% Similarity=0.697 Sum_probs=41.5
Q ss_pred CCcccccccccccceEe-cccccccHHHHHHHHhcCCCCCCCCccccC
Q 008218 289 DSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
-..|.+|...+.++... -|-|.||.+||...++....||.|...+-.
T Consensus 15 ~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~ 62 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHK 62 (331)
T ss_pred ceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccC
Confidence 46899999999998755 699999999999999999999999987743
No 67
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=95.80 E-value=0.0066 Score=61.12 Aligned_cols=50 Identities=30% Similarity=0.765 Sum_probs=39.0
Q ss_pred CCcccccccccccce---EecccccccHHHHHHHHhc-----------------------CCCCCCCCccccCCCC
Q 008218 289 DSTCIICREEMTTAK---KLICGHLFHVHCLRSWLER-----------------------QHTCPTCRALVVPPEN 338 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~---~l~C~H~Fh~~Cl~~wl~~-----------------------~~~CP~Cr~~i~~~~~ 338 (573)
...|.||+--|.+.. +++|.|.||..|+.++|.. ...||+||..|....+
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~ 190 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEEN 190 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccccc
Confidence 457999998887654 7799999999999887642 2259999998875544
No 68
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.62 E-value=0.0057 Score=46.33 Aligned_cols=46 Identities=28% Similarity=0.580 Sum_probs=37.2
Q ss_pred CCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCccccCC
Q 008218 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~ 336 (573)
...|..|...-..+..+||||..|..|..-+ +-+-||.|..++...
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFD 52 (55)
T ss_pred ceeEEEccccccccccccccceeeccccChh--hccCCCCCCCcccCC
Confidence 4568888888788889999999999997665 556799999887543
No 69
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.59 E-value=0.0079 Score=70.84 Aligned_cols=48 Identities=38% Similarity=0.859 Sum_probs=38.1
Q ss_pred cCCCcccccccccc---cceEecccccccHHHHHHHHhcC----------CCCCCCCcccc
Q 008218 287 ASDSTCIICREEMT---TAKKLICGHLFHVHCLRSWLERQ----------HTCPTCRALVV 334 (573)
Q Consensus 287 ~~~~~C~IC~~~~~---~~~~l~C~H~Fh~~Cl~~wl~~~----------~~CP~Cr~~i~ 334 (573)
..|+.|-||..+-- ...+|.|+|+||..|.+..|++. -+||+|+.+|.
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 45789999987653 34688999999999999877651 26999998875
No 70
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.43 E-value=0.01 Score=60.68 Aligned_cols=56 Identities=29% Similarity=0.573 Sum_probs=45.9
Q ss_pred CCCChhhhccCCCcccccccccccceEecccccccHHHHHH--HHhcCCCCCCCCccc
Q 008218 278 PDASPEELDASDSTCIICREEMTTAKKLICGHLFHVHCLRS--WLERQHTCPTCRALV 333 (573)
Q Consensus 278 ~~~~~~~~~~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~--wl~~~~~CP~Cr~~i 333 (573)
.+.+.++.++.+..|-||.+...-...+||+|..|--|--+ -|.....||+||..-
T Consensus 50 ttsSaddtDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 50 TTSSADDTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccccccccccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 34556777788889999999988888999999999999765 345678899999754
No 71
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.05 E-value=0.017 Score=53.41 Aligned_cols=48 Identities=25% Similarity=0.721 Sum_probs=35.8
Q ss_pred ccCCCcccccccccccceEec--ccc---cccHHHHHHHHhc--CCCCCCCCcccc
Q 008218 286 DASDSTCIICREEMTTAKKLI--CGH---LFHVHCLRSWLER--QHTCPTCRALVV 334 (573)
Q Consensus 286 ~~~~~~C~IC~~~~~~~~~l~--C~H---~Fh~~Cl~~wl~~--~~~CP~Cr~~i~ 334 (573)
...+..|-||.++.. ...-| |.. .-|.+|++.|+.. ...|+.|+.+..
T Consensus 5 s~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 5 SLMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 345779999999864 33446 455 4699999999965 446999998764
No 72
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.11 Score=53.21 Aligned_cols=47 Identities=19% Similarity=0.429 Sum_probs=40.3
Q ss_pred cCCCcccccccccccceEec-ccccccHHHHHHHHhcCCCCCCCCccc
Q 008218 287 ASDSTCIICREEMTTAKKLI-CGHLFHVHCLRSWLERQHTCPTCRALV 333 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~-C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i 333 (573)
.....|++|+..-.+|..+. -|-+||+.|+-+.+..++.||+-..+.
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 35678999999998888775 599999999999999999999876554
No 73
>PHA02862 5L protein; Provisional
Probab=94.75 E-value=0.019 Score=52.04 Aligned_cols=45 Identities=22% Similarity=0.775 Sum_probs=34.5
Q ss_pred CCcccccccccccceEeccc-----ccccHHHHHHHHhc--CCCCCCCCcccc
Q 008218 289 DSTCIICREEMTTAKKLICG-----HLFHVHCLRSWLER--QHTCPTCRALVV 334 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~-----H~Fh~~Cl~~wl~~--~~~CP~Cr~~i~ 334 (573)
++.|-||.++-++. .-||+ ..-|.+|+.+|+.. ...||.|+.+..
T Consensus 2 ~diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 46899999986543 45763 35899999999965 446999998764
No 74
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.37 Score=49.13 Aligned_cols=44 Identities=27% Similarity=0.655 Sum_probs=31.1
Q ss_pred CCccccccccccc-ceEecccccccHHHHHHHHhcCCCCCCCCcccc
Q 008218 289 DSTCIICREEMTT-AKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 289 ~~~C~IC~~~~~~-~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
--.|.-|--.+.. ++..||+|+||.+|.+. +..+.||.|-..+.
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhc--CccccCcCcccHHH
Confidence 3456667544443 45679999999999754 44668999987664
No 75
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.38 E-value=0.024 Score=42.02 Aligned_cols=42 Identities=31% Similarity=0.706 Sum_probs=21.8
Q ss_pred ccccccccccce--Ee--cccccccHHHHHHHHh-cCCCCCCCCccc
Q 008218 292 CIICREEMTTAK--KL--ICGHLFHVHCLRSWLE-RQHTCPTCRALV 333 (573)
Q Consensus 292 C~IC~~~~~~~~--~l--~C~H~Fh~~Cl~~wl~-~~~~CP~Cr~~i 333 (573)
|++|.+++.... .. +||+..|..|...-++ .+..||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999984432 33 5899999999999886 478899999863
No 76
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=0.025 Score=59.51 Aligned_cols=50 Identities=32% Similarity=0.572 Sum_probs=36.9
Q ss_pred hhhhccCCCcccccccccccc---eEecccccccHHHHHHHHhc--------CCCCCCCCc
Q 008218 282 PEELDASDSTCIICREEMTTA---KKLICGHLFHVHCLRSWLER--------QHTCPTCRA 331 (573)
Q Consensus 282 ~~~~~~~~~~C~IC~~~~~~~---~~l~C~H~Fh~~Cl~~wl~~--------~~~CP~Cr~ 331 (573)
.+........|.||++...-. +.+||+|+||..|++.+... .-.||-|..
T Consensus 177 ~~~F~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 177 LEKFVNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred HHHHHhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 344445678999999987542 47899999999999998843 224776654
No 77
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=94.25 E-value=0.064 Score=46.43 Aligned_cols=31 Identities=23% Similarity=0.794 Sum_probs=25.8
Q ss_pred cCCCcccccccccccce--EecccccccHHHHH
Q 008218 287 ASDSTCIICREEMTTAK--KLICGHLFHVHCLR 317 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~--~l~C~H~Fh~~Cl~ 317 (573)
..+..|++|...+.... ..||||++|..|++
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 34678999999998764 55999999999975
No 78
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=0.03 Score=52.30 Aligned_cols=46 Identities=30% Similarity=0.733 Sum_probs=33.0
Q ss_pred Ccccccccccccc-------eEecccccccHHHHHHHHhc-----------CCCCCCCCccccC
Q 008218 290 STCIICREEMTTA-------KKLICGHLFHVHCLRSWLER-----------QHTCPTCRALVVP 335 (573)
Q Consensus 290 ~~C~IC~~~~~~~-------~~l~C~H~Fh~~Cl~~wl~~-----------~~~CP~Cr~~i~~ 335 (573)
..|.||+..--++ +-..||.-||.-|+..||+. -..||.|..++..
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 3577776544332 23469999999999999975 1269999988753
No 79
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.59 E-value=0.055 Score=53.24 Aligned_cols=50 Identities=16% Similarity=0.375 Sum_probs=42.3
Q ss_pred CCCcccccccccccce---Ee-cccccccHHHHHHHHhcCCCCCCCCccccCCC
Q 008218 288 SDSTCIICREEMTTAK---KL-ICGHLFHVHCLRSWLERQHTCPTCRALVVPPE 337 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~---~l-~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~~ 337 (573)
....|++|.+.+.+.. .| ||||+++.+|..+.+.....||+|-.++...+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD 273 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence 4568999999998753 33 89999999999999999999999988886544
No 80
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=93.42 E-value=0.041 Score=40.73 Aligned_cols=38 Identities=29% Similarity=0.761 Sum_probs=26.2
Q ss_pred ccccccccccce--Eecc--cc---cccHHHHHHHHhc--CCCCCCC
Q 008218 292 CIICREEMTTAK--KLIC--GH---LFHVHCLRSWLER--QHTCPTC 329 (573)
Q Consensus 292 C~IC~~~~~~~~--~l~C--~H---~Fh~~Cl~~wl~~--~~~CP~C 329 (573)
|-||++.-++.. ..|| +- ..|..|+..|+.. ..+|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 779998877654 4465 33 6899999999964 5579987
No 81
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=0.069 Score=60.16 Aligned_cols=61 Identities=33% Similarity=0.761 Sum_probs=51.3
Q ss_pred hcCCCCChhhhccCCCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCccccCCCCC
Q 008218 275 DRFPDASPEELDASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENG 339 (573)
Q Consensus 275 ~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~~~~ 339 (573)
+.++.++.+++....+.|.||++++ ..+..+|. |..|+++|+..+..||+|++.+...+..
T Consensus 465 ~~~s~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~~ 525 (543)
T KOG0802|consen 465 NSLSEATPSQLREPNDVCAICYQEM-SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDFL 525 (543)
T ss_pred CCCCCCChhhhhcccCcchHHHHHH-Hhcccccc---chhHHHhhhhhccccCCCchhhhccccc
Confidence 4556777888888899999999999 66777898 8999999999999999999887655443
No 82
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=92.97 E-value=0.048 Score=62.08 Aligned_cols=47 Identities=28% Similarity=0.914 Sum_probs=36.3
Q ss_pred ccCCCcccccccccccceEe----cccccccHHHHHHHHhc-------CCCCCCCCcc
Q 008218 286 DASDSTCIICREEMTTAKKL----ICGHLFHVHCLRSWLER-------QHTCPTCRAL 332 (573)
Q Consensus 286 ~~~~~~C~IC~~~~~~~~~l----~C~H~Fh~~Cl~~wl~~-------~~~CP~Cr~~ 332 (573)
....-+|.||.+.+....-+ .|.|+||..||+.|..+ .-.||.|+..
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred hcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 34567899999998765422 59999999999999864 1259999843
No 83
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.94 E-value=0.053 Score=55.52 Aligned_cols=48 Identities=25% Similarity=0.539 Sum_probs=36.0
Q ss_pred CCCcccccccccccceE----ecccccccHHHHHHHHh-cCCCCCCCCccccC
Q 008218 288 SDSTCIICREEMTTAKK----LICGHLFHVHCLRSWLE-RQHTCPTCRALVVP 335 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~----l~C~H~Fh~~Cl~~wl~-~~~~CP~Cr~~i~~ 335 (573)
.++.|+.|+|.+...++ .|||-..|.-|....-+ -+..||-||+....
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 35569999999987664 37999888888766543 36789999986643
No 84
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.45 E-value=0.078 Score=54.89 Aligned_cols=45 Identities=31% Similarity=0.724 Sum_probs=36.6
Q ss_pred CCccccccccccc------ceEecccccccHHHHHHHHhc-CCCCCCCCccc
Q 008218 289 DSTCIICREEMTT------AKKLICGHLFHVHCLRSWLER-QHTCPTCRALV 333 (573)
Q Consensus 289 ~~~C~IC~~~~~~------~~~l~C~H~Fh~~Cl~~wl~~-~~~CP~Cr~~i 333 (573)
...|-||-++|+. |+.|.|||.+|..|+.+-+.. ...||.||.+.
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 3579999999975 456779999999999887755 34699999875
No 85
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.34 E-value=21 Score=41.54 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhhhhccc
Q 008218 110 LLLIKALHWLAQKRVEYI 127 (573)
Q Consensus 110 ll~lk~fh~l~~dR~e~l 127 (573)
..++-++-++..-|+|||
T Consensus 37 w~~~~~~d~~~~~r~e~~ 54 (697)
T PF09726_consen 37 WALVLLADFMLEFRFEYL 54 (697)
T ss_pred HHHHHHHHHHhhhHHHHH
Confidence 344445778889999998
No 86
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=92.13 E-value=0.091 Score=53.40 Aligned_cols=43 Identities=35% Similarity=0.794 Sum_probs=36.6
Q ss_pred CCccccccccccc----ceEecccccccHHHHHHHHhcCCCCCCCCc
Q 008218 289 DSTCIICREEMTT----AKKLICGHLFHVHCLRSWLERQHTCPTCRA 331 (573)
Q Consensus 289 ~~~C~IC~~~~~~----~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~ 331 (573)
...|+||.+.+-. +..++|||..|..|+......+.+||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 3459999998754 557899999999999999877799999988
No 87
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.11 E-value=0.18 Score=57.99 Aligned_cols=34 Identities=26% Similarity=0.620 Sum_probs=27.1
Q ss_pred cCCCcccccccccccc--eEecccccccHHHHHHHH
Q 008218 287 ASDSTCIICREEMTTA--KKLICGHLFHVHCLRSWL 320 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~--~~l~C~H~Fh~~Cl~~wl 320 (573)
+.++.|.+|...+-.. ..-||||.||+.|+.+-.
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccchHHHHHHHHHH
Confidence 3578999998877543 366999999999998754
No 88
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=92.02 E-value=0.23 Score=52.56 Aligned_cols=49 Identities=27% Similarity=0.704 Sum_probs=33.3
Q ss_pred ccCCCcccccccccccceEe-----------------c-----ccccccHHHHHHHHhc-------------CCCCCCCC
Q 008218 286 DASDSTCIICREEMTTAKKL-----------------I-----CGHLFHVHCLRSWLER-------------QHTCPTCR 330 (573)
Q Consensus 286 ~~~~~~C~IC~~~~~~~~~l-----------------~-----C~H~Fh~~Cl~~wl~~-------------~~~CP~Cr 330 (573)
..+.+.|.-|+..-.+.+.. + |....|.+|+-+|+-. +-+||+||
T Consensus 268 ~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCR 347 (358)
T PF10272_consen 268 GQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCR 347 (358)
T ss_pred ccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCc
Confidence 34566888898765432211 1 6677899999999843 33799999
Q ss_pred cccc
Q 008218 331 ALVV 334 (573)
Q Consensus 331 ~~i~ 334 (573)
+...
T Consensus 348 a~FC 351 (358)
T PF10272_consen 348 AKFC 351 (358)
T ss_pred ccce
Confidence 8754
No 89
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=91.91 E-value=0.14 Score=37.13 Aligned_cols=38 Identities=26% Similarity=0.857 Sum_probs=24.4
Q ss_pred ccccccccccceEec---ccccccHHHHHHHHhcCC--CCCCC
Q 008218 292 CIICREEMTTAKKLI---CGHLFHVHCLRSWLERQH--TCPTC 329 (573)
Q Consensus 292 C~IC~~~~~~~~~l~---C~H~Fh~~Cl~~wl~~~~--~CP~C 329 (573)
|.+|.+....+.+=+ |+=.+|..|++.++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 778888888887655 888999999999997654 69988
No 90
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.75 E-value=0.067 Score=61.34 Aligned_cols=46 Identities=30% Similarity=0.722 Sum_probs=38.7
Q ss_pred CcccccccccccceEecccccccHHHHHHHHhc--CCCCCCCCccccCC
Q 008218 290 STCIICREEMTTAKKLICGHLFHVHCLRSWLER--QHTCPTCRALVVPP 336 (573)
Q Consensus 290 ~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~--~~~CP~Cr~~i~~~ 336 (573)
..|.||.+ .+.+...+|||.||.+|+..-++. ...||.||..+...
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 78999999 777888999999999999998755 23599999877543
No 91
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=91.48 E-value=0.93 Score=48.14 Aligned_cols=33 Identities=24% Similarity=0.487 Sum_probs=28.9
Q ss_pred CCCcccccccccccceEecccccccHHHHHHHH
Q 008218 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWL 320 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl 320 (573)
.+..|+||..-+++|..|||+|..|..|.+.-+
T Consensus 3 eelkc~vc~~f~~epiil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 3 EELKCPVCGSFYREPIILPCSHNLCQACARNIL 35 (699)
T ss_pred ccccCceehhhccCceEeecccHHHHHHHHhhc
Confidence 356799999999999999999999999987543
No 92
>PHA03096 p28-like protein; Provisional
Probab=91.34 E-value=0.1 Score=53.64 Aligned_cols=42 Identities=29% Similarity=0.636 Sum_probs=30.4
Q ss_pred Ccccccccccccce-------Ee-cccccccHHHHHHHHhc---CCCCCCCCc
Q 008218 290 STCIICREEMTTAK-------KL-ICGHLFHVHCLRSWLER---QHTCPTCRA 331 (573)
Q Consensus 290 ~~C~IC~~~~~~~~-------~l-~C~H~Fh~~Cl~~wl~~---~~~CP~Cr~ 331 (573)
..|.||++...... .| .|.|.||..|++.|-.. ..+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 57999999875421 23 59999999999999854 234555543
No 93
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=91.18 E-value=0.12 Score=46.77 Aligned_cols=40 Identities=20% Similarity=0.545 Sum_probs=29.4
Q ss_pred CCccccccccccc--ce-Eeccc------ccccHHHHHHHHhcCCCCCC
Q 008218 289 DSTCIICREEMTT--AK-KLICG------HLFHVHCLRSWLERQHTCPT 328 (573)
Q Consensus 289 ~~~C~IC~~~~~~--~~-~l~C~------H~Fh~~Cl~~wl~~~~~CP~ 328 (573)
..+|.||++.+.+ |+ -++|| |.||..|+++|-.....=|.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPf 74 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDPF 74 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCCc
Confidence 5689999999987 54 34665 78999999999543333343
No 94
>PF04641 Rtf2: Rtf2 RING-finger
Probab=90.59 E-value=0.23 Score=50.52 Aligned_cols=49 Identities=18% Similarity=0.441 Sum_probs=38.5
Q ss_pred cCCCcccccccccccce----EecccccccHHHHHHHHhcCCCCCCCCccccCC
Q 008218 287 ASDSTCIICREEMTTAK----KLICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~----~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~ 336 (573)
.....|+|+...|.... ..||||+|...|+++-- ....||+|-.+....
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccC
Confidence 45678999999995432 23999999999999973 456799999887643
No 95
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.44 E-value=0.092 Score=51.93 Aligned_cols=44 Identities=23% Similarity=0.482 Sum_probs=29.0
Q ss_pred cccccccccc-cc-eEecccccccHHHHHHHHhcCCCCCCCCccccCC
Q 008218 291 TCIICREEMT-TA-KKLICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (573)
Q Consensus 291 ~C~IC~~~~~-~~-~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~ 336 (573)
.|.-|..--. ++ ..+.|+|+||..|...-. ...||+|+.++...
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir~i 50 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIRII 50 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccCC--ccccccccceeeee
Confidence 3555544333 22 245899999999976532 23899999987543
No 96
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=90.28 E-value=0.18 Score=57.14 Aligned_cols=48 Identities=29% Similarity=0.657 Sum_probs=36.4
Q ss_pred cCCCcccccccccccceEe--cccc-----cccHHHHHHHHhcC--CCCCCCCcccc
Q 008218 287 ASDSTCIICREEMTTAKKL--ICGH-----LFHVHCLRSWLERQ--HTCPTCRALVV 334 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l--~C~H-----~Fh~~Cl~~wl~~~--~~CP~Cr~~i~ 334 (573)
+++..|.||+.+-.....| ||+- ..|.+|+.+|++-+ ..|-+|+.+..
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 4567999999876655544 7653 48999999999754 35999998764
No 97
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=89.89 E-value=0.77 Score=41.33 Aligned_cols=49 Identities=24% Similarity=0.587 Sum_probs=38.3
Q ss_pred CCCcccccccccccceEec----ccccccHHHHHH-HH--hcCCCCCCCCccccCC
Q 008218 288 SDSTCIICREEMTTAKKLI----CGHLFHVHCLRS-WL--ERQHTCPTCRALVVPP 336 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~----C~H~Fh~~Cl~~-wl--~~~~~CP~Cr~~i~~~ 336 (573)
.--+|.||.|.-.+...|. ||-..|..|.-. |- ..+..||.|+......
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 3458999999988887773 999999998766 54 2367899999877543
No 98
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.21 E-value=0.047 Score=57.03 Aligned_cols=46 Identities=28% Similarity=0.698 Sum_probs=39.9
Q ss_pred CCcccccccccccc----eEecccccccHHHHHHHHhcCCCCCCCCcccc
Q 008218 289 DSTCIICREEMTTA----KKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 289 ~~~C~IC~~~~~~~----~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
...|+||.+.++.. ..+.|||..|..||.+|+.....||.|+..+.
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~ 245 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELP 245 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence 45799999988754 35689999999999999999889999999875
No 99
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=88.67 E-value=0.16 Score=60.62 Aligned_cols=46 Identities=26% Similarity=0.627 Sum_probs=40.3
Q ss_pred CCCcccccccccc-cceEecccccccHHHHHHHHhcCCCCCCCCccc
Q 008218 288 SDSTCIICREEMT-TAKKLICGHLFHVHCLRSWLERQHTCPTCRALV 333 (573)
Q Consensus 288 ~~~~C~IC~~~~~-~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i 333 (573)
.-..|.||.+.+. .+-...|||.+|..|...|+..+..||.|+...
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhhh
Confidence 3458999999999 566789999999999999999999999998433
No 100
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=88.28 E-value=0.47 Score=44.01 Aligned_cols=33 Identities=36% Similarity=0.692 Sum_probs=25.0
Q ss_pred CCcccccccccccceEec------------ccc-cccHHHHHHHHh
Q 008218 289 DSTCIICREEMTTAKKLI------------CGH-LFHVHCLRSWLE 321 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~------------C~H-~Fh~~Cl~~wl~ 321 (573)
+..|+||+|---+.+.|- |+- .-|..|+++.-+
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 568999999988888774 443 357899998754
No 101
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.62 E-value=0.32 Score=48.35 Aligned_cols=47 Identities=23% Similarity=0.668 Sum_probs=35.4
Q ss_pred cCCCcccccccccccceE----ecc-----cccccHHHHHHHHhcC--------CCCCCCCccc
Q 008218 287 ASDSTCIICREEMTTAKK----LIC-----GHLFHVHCLRSWLERQ--------HTCPTCRALV 333 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~----l~C-----~H~Fh~~Cl~~wl~~~--------~~CP~Cr~~i 333 (573)
+.+..|-||...-++... -|| .|--|..|+..|...+ -+||-|+.+.
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 456789999998777553 265 3679999999999542 2599999865
No 102
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=85.05 E-value=0.63 Score=47.20 Aligned_cols=44 Identities=23% Similarity=0.617 Sum_probs=32.5
Q ss_pred cccccccccc-cce-E---ecccccccHHHHHHHHhc-CCCCCCCCcccc
Q 008218 291 TCIICREEMT-TAK-K---LICGHLFHVHCLRSWLER-QHTCPTCRALVV 334 (573)
Q Consensus 291 ~C~IC~~~~~-~~~-~---l~C~H~Fh~~Cl~~wl~~-~~~CP~Cr~~i~ 334 (573)
.|++|..+-- .|. + -+|+|..|.+|++.-+.. ...||-|-..+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 5888876532 332 2 289999999999998865 568999976553
No 103
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.89 E-value=0.37 Score=47.30 Aligned_cols=40 Identities=35% Similarity=0.645 Sum_probs=31.3
Q ss_pred cccccccccccceEeccccc-ccHHHHHHHHhcCCCCCCCCcccc
Q 008218 291 TCIICREEMTTAKKLICGHL-FHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 291 ~C~IC~~~~~~~~~l~C~H~-Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
.|-.|.+.-.....+||.|. +|..|=.. -..||+|+....
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred cceecCcCCceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 39999998777778899995 88888533 456999987654
No 104
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=83.23 E-value=49 Score=40.16 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=14.7
Q ss_pred CCCcccccccccccceEecccc
Q 008218 288 SDSTCIICREEMTTAKKLICGH 309 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H 309 (573)
+.+.|.-|.|..--+-.-|||.
T Consensus 1390 ekd~~rgvsEnImlgqlap~gT 1411 (1605)
T KOG0260|consen 1390 EKDPCRGVSENIMLGQLAPMGT 1411 (1605)
T ss_pred ccCCCccceeeeeecccccCCC
Confidence 4566777877766665557764
No 105
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=82.14 E-value=0.79 Score=51.87 Aligned_cols=24 Identities=33% Similarity=0.981 Sum_probs=22.1
Q ss_pred ecccccccHHHHHHHHhcCCCCCC
Q 008218 305 LICGHLFHVHCLRSWLERQHTCPT 328 (573)
Q Consensus 305 l~C~H~Fh~~Cl~~wl~~~~~CP~ 328 (573)
..|+|+.|.+|.++|++.+..||.
T Consensus 1046 g~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1046 GTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred ccccccccHHHHHHHHhcCCcCCC
Confidence 369999999999999999999995
No 106
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.02 E-value=1.2 Score=47.15 Aligned_cols=42 Identities=29% Similarity=0.605 Sum_probs=33.4
Q ss_pred CCCccccccccc---ccceEecccccccHHHHHHHHhcCC---CCCCC
Q 008218 288 SDSTCIICREEM---TTAKKLICGHLFHVHCLRSWLERQH---TCPTC 329 (573)
Q Consensus 288 ~~~~C~IC~~~~---~~~~~l~C~H~Fh~~Cl~~wl~~~~---~CP~C 329 (573)
+-+.|+|=.+.- .+|.+|.|||+.+.+-+.+--+.+. .||.|
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCC
Confidence 467899866544 3578999999999999999776543 69999
No 107
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=80.64 E-value=0.98 Score=46.83 Aligned_cols=46 Identities=24% Similarity=0.469 Sum_probs=36.2
Q ss_pred cCCCcccccccccccce-EecccccccHHHHHHHHhcCCCCCCCCccccC
Q 008218 287 ASDSTCIICREEMTTAK-KLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~-~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
..-.+|+||.+.+..|. .-+=||.-|..|-.+ ....||.||.++..
T Consensus 46 ~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~---~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK---VSNKCPTCRLPIGN 92 (299)
T ss_pred hhhccCchhhccCcccceecCCCcEehhhhhhh---hcccCCcccccccc
Confidence 34578999999998885 334589999999753 56789999998863
No 108
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.04 E-value=0.66 Score=51.60 Aligned_cols=36 Identities=31% Similarity=0.702 Sum_probs=23.1
Q ss_pred Cccccccccccc----ceEecccccccHHHHHHHHhcCCCCC
Q 008218 290 STCIICREEMTT----AKKLICGHLFHVHCLRSWLERQHTCP 327 (573)
Q Consensus 290 ~~C~IC~~~~~~----~~~l~C~H~Fh~~Cl~~wl~~~~~CP 327 (573)
..|.||+..+-. |+.+-|||..|..|+..-. +.+||
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp 51 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP 51 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC
Confidence 357787766643 4455688888888876543 34677
No 109
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=79.62 E-value=21 Score=43.01 Aligned_cols=9 Identities=44% Similarity=0.268 Sum_probs=3.3
Q ss_pred CcHHHHHHH
Q 008218 69 LREAEVERL 77 (573)
Q Consensus 69 Lr~~E~e~l 77 (573)
+|..|.-|+
T Consensus 1020 krv~~e~rl 1028 (1605)
T KOG0260|consen 1020 KRVLEEYRL 1028 (1605)
T ss_pred HHHHHHhcc
Confidence 333333333
No 110
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=79.13 E-value=1.2 Score=43.95 Aligned_cols=46 Identities=26% Similarity=0.687 Sum_probs=33.6
Q ss_pred CCCccccccccc-ccce-E-e--c-ccccccHHHHHHHHhcC-CCCC--CCCccc
Q 008218 288 SDSTCIICREEM-TTAK-K-L--I-CGHLFHVHCLRSWLERQ-HTCP--TCRALV 333 (573)
Q Consensus 288 ~~~~C~IC~~~~-~~~~-~-l--~-C~H~Fh~~Cl~~wl~~~-~~CP--~Cr~~i 333 (573)
.+..|++|..+- -.|+ + + | |-|..|.+|+++-+... ..|| -|.+-+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 356899998653 3343 2 2 5 99999999999999765 4799 686533
No 111
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=78.84 E-value=1.1 Score=51.13 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=35.7
Q ss_pred CCCcccccccccccce----Eec---ccccccHHHHHHHHhc------CCCCCCCCcccc
Q 008218 288 SDSTCIICREEMTTAK----KLI---CGHLFHVHCLRSWLER------QHTCPTCRALVV 334 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~----~l~---C~H~Fh~~Cl~~wl~~------~~~CP~Cr~~i~ 334 (573)
..+.|.+|.-++.+++ .+| |+|.+|..||..|..+ +-.|++|...+.
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 4567888888877643 345 9999999999999975 335899987653
No 112
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.65 E-value=0.72 Score=42.72 Aligned_cols=36 Identities=28% Similarity=0.694 Sum_probs=26.2
Q ss_pred CCCChhh--hccCCCcccccccccccce---EecccccccH
Q 008218 278 PDASPEE--LDASDSTCIICREEMTTAK---KLICGHLFHV 313 (573)
Q Consensus 278 ~~~~~~~--~~~~~~~C~IC~~~~~~~~---~l~C~H~Fh~ 313 (573)
|..+..+ +....-+|.||+|+++.++ +|||--++|+
T Consensus 164 PrlsYNdDVL~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 164 PRLSYNDDVLKDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred cccccccchhcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 4444433 3345678999999999876 6799888775
No 113
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=76.65 E-value=1.1 Score=32.94 Aligned_cols=43 Identities=26% Similarity=0.630 Sum_probs=25.8
Q ss_pred cccccccccccceEeccc-ccccHHHHHHHHhcCCCCCCCCccccC
Q 008218 291 TCIICREEMTTAKKLICG-HLFHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 291 ~C~IC~~~~~~~~~l~C~-H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
.|.-|+-. +.-...|. |..|..|+...+..+..||+|..+++.
T Consensus 4 nCKsCWf~--~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCWFA--NKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp ---SS-S----SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred cChhhhhc--CCCeeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 45556533 33355774 899999999999999999999998753
No 114
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=75.90 E-value=41 Score=39.62 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=16.8
Q ss_pred CCCCCCCcchhHHHHHhHHHHHHHHHH
Q 008218 478 LPSTQNTPVSQLEAQRKFIENQIEVLQ 504 (573)
Q Consensus 478 ~~~~~~~~~sq~~a~~~~~~s~~~~l~ 504 (573)
.+++++.+.+ +++|-+++..-+|-++
T Consensus 219 l~saskte~e-Lr~QvrdLtEkLetlR 244 (1243)
T KOG0971|consen 219 LPSASKTEEE-LRAQVRDLTEKLETLR 244 (1243)
T ss_pred CCccccchHH-HHHHHHHHHHHHHHHH
Confidence 3455555544 8888888777776665
No 115
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.74 E-value=1.4 Score=44.56 Aligned_cols=28 Identities=32% Similarity=0.702 Sum_probs=22.5
Q ss_pred ccccccHHHHHHHHhc-------------CCCCCCCCcccc
Q 008218 307 CGHLFHVHCLRSWLER-------------QHTCPTCRALVV 334 (573)
Q Consensus 307 C~H~Fh~~Cl~~wl~~-------------~~~CP~Cr~~i~ 334 (573)
|....|.+|+-+|+.. +-+||+||+...
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 7788999999988732 447999999764
No 116
>PRK12495 hypothetical protein; Provisional
Probab=75.17 E-value=90 Score=30.87 Aligned_cols=30 Identities=27% Similarity=0.629 Sum_probs=18.3
Q ss_pred CCCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCccccC
Q 008218 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
....|..|-..+- -+.....||.|...+..
T Consensus 41 sa~hC~~CG~PIp------------------a~pG~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 41 TNAHCDECGDPIF------------------RHDGQEFCPTCQQPVTE 70 (226)
T ss_pred chhhcccccCccc------------------CCCCeeECCCCCCcccc
Confidence 3567888866643 11223459999876653
No 117
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=74.59 E-value=1.7 Score=45.12 Aligned_cols=47 Identities=28% Similarity=0.700 Sum_probs=35.2
Q ss_pred CCcccccccccccc----eEeccc-----ccccHHHHHHHHh--cCCCCCCCCccccC
Q 008218 289 DSTCIICREEMTTA----KKLICG-----HLFHVHCLRSWLE--RQHTCPTCRALVVP 335 (573)
Q Consensus 289 ~~~C~IC~~~~~~~----~~l~C~-----H~Fh~~Cl~~wl~--~~~~CP~Cr~~i~~ 335 (573)
+..|-||.++.... ...||. +..|..|+..|+. ....|..|......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 47899999977643 355763 4579999999997 45679999876543
No 118
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=74.52 E-value=2.3 Score=48.50 Aligned_cols=38 Identities=26% Similarity=0.656 Sum_probs=29.2
Q ss_pred cccccccccccceEe--cccccccHHHHHHHHhcCCCCCC
Q 008218 291 TCIICREEMTTAKKL--ICGHLFHVHCLRSWLERQHTCPT 328 (573)
Q Consensus 291 ~C~IC~~~~~~~~~l--~C~H~Fh~~Cl~~wl~~~~~CP~ 328 (573)
.|.+|...+.....- -|||.-|.+|+++|+..+..||.
T Consensus 781 ~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 781 KCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred CceeecceeeeeEeecccccccccHHHHHHHHhcCCCCcc
Confidence 577776655443332 49999999999999999888877
No 119
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=73.51 E-value=1 Score=51.17 Aligned_cols=46 Identities=28% Similarity=0.650 Sum_probs=38.9
Q ss_pred CCcccccccccccceEecccccccHHHHHHHHhc---CCCCCCCCcccc
Q 008218 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLER---QHTCPTCRALVV 334 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~---~~~CP~Cr~~i~ 334 (573)
..+|.||...+.++..+.|.|.||..|+..-+.. ...||+|+..+.
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 5689999999999999999999999998876644 346999997664
No 120
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=73.29 E-value=4 Score=42.40 Aligned_cols=45 Identities=27% Similarity=0.660 Sum_probs=36.6
Q ss_pred Ccccccccccccce--Ee--cccccccHHHHHHHHhcCCCCCCCCcccc
Q 008218 290 STCIICREEMTTAK--KL--ICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 290 ~~C~IC~~~~~~~~--~l--~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
..|+||.+.....+ .+ ||++..|..|+..-...+.+||.||.+..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 68999999885443 33 68999999999988888999999995553
No 121
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=68.72 E-value=2.6 Score=40.97 Aligned_cols=43 Identities=23% Similarity=0.706 Sum_probs=36.3
Q ss_pred CCcccccccccccceEe-cccccccHHHHHHHHhcCCCCCCCCc
Q 008218 289 DSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLERQHTCPTCRA 331 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~~~~CP~Cr~ 331 (573)
-..|.+|.+..-.+.+- .|+-.+|..|+...+++...||.|..
T Consensus 181 lk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cphc~d 224 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPHCGD 224 (235)
T ss_pred HHHHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCchhc
Confidence 35799999987776644 68888999999999999999999954
No 122
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=67.08 E-value=2.9e+02 Score=33.45 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=11.9
Q ss_pred hhheecccccccccccchhh
Q 008218 193 YVFYVSDMLMEGQWERKAVY 212 (573)
Q Consensus 193 Y~~~~~d~~~~~~we~k~~~ 212 (573)
++..++|-.....|+..+..
T Consensus 1336 Wv~ImyDgldavavdqqPI~ 1355 (1956)
T KOG2302|consen 1336 WVNIMYDGLDAVAVDQQPIL 1355 (1956)
T ss_pred hhhhhccchhhceeeeeccc
Confidence 44445666666677766654
No 123
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=65.39 E-value=6.4 Score=29.45 Aligned_cols=42 Identities=26% Similarity=0.522 Sum_probs=21.3
Q ss_pred CcccccccccccceEe-cccccccHHHHHHHHhc---C--CCCCCCCcc
Q 008218 290 STCIICREEMTTAKKL-ICGHLFHVHCLRSWLER---Q--HTCPTCRAL 332 (573)
Q Consensus 290 ~~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~---~--~~CP~Cr~~ 332 (573)
..|+|....++.|.+- .|.|.-|.+ ++.|++. . -.||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 4699999999888765 699974432 3456643 2 259999763
No 124
>PTZ00249 variable surface protein Vir28; Provisional
Probab=61.70 E-value=21 Score=39.28 Aligned_cols=12 Identities=33% Similarity=0.410 Sum_probs=5.6
Q ss_pred cccccchheeee
Q 008218 546 AMGKTKKLVHSF 557 (573)
Q Consensus 546 ~~~~~~~~~~~~ 557 (573)
-||+.|..+-+.
T Consensus 422 ~~~~~~~~~~~~ 433 (516)
T PTZ00249 422 IMGTIKGAVSNV 433 (516)
T ss_pred hHHhhhHHHHHh
Confidence 355555444433
No 125
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=59.88 E-value=75 Score=36.44 Aligned_cols=47 Identities=36% Similarity=0.632 Sum_probs=31.5
Q ss_pred cCCCcccccccccccce----------EecccccccHHHHHHH--H-hc-------CCCCCCCCccc
Q 008218 287 ASDSTCIICREEMTTAK----------KLICGHLFHVHCLRSW--L-ER-------QHTCPTCRALV 333 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~----------~l~C~H~Fh~~Cl~~w--l-~~-------~~~CP~Cr~~i 333 (573)
.....|-||-|.=++.+ +-.|+..||..|...- | +. -+-|-+|+.-+
T Consensus 115 RfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hf 181 (900)
T KOG0956|consen 115 RFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHF 181 (900)
T ss_pred hhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHH
Confidence 34678999998844322 2248889999998762 1 21 23599998644
No 126
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.56 E-value=8.8 Score=38.37 Aligned_cols=49 Identities=20% Similarity=0.388 Sum_probs=37.1
Q ss_pred cCCCcccccccccccce----EecccccccHHHHHHHHhcCCCCCCCCccccCCC
Q 008218 287 ASDSTCIICREEMTTAK----KLICGHLFHVHCLRSWLERQHTCPTCRALVVPPE 337 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~----~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~~ 337 (573)
.....|+|-.-+|.... ..+|||+|-..-+++. ...+|++|.+.....+
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDD 161 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccC
Confidence 44578998777776543 3489999999988875 3678999998876544
No 127
>PLN03223 Polycystin cation channel protein; Provisional
Probab=58.00 E-value=4.8e+02 Score=32.90 Aligned_cols=49 Identities=18% Similarity=0.313 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhccCchhhhh------hhhhcCCchHHHHHHHHHHHHHHH
Q 008218 9 GFSFMATLAVVYHAFNSRRQFYPSM------VYLSTSKISLVLLMNMGLVIMCIL 57 (573)
Q Consensus 9 ~~S~~~~~~~v~~a~~~~~~fy~~~------v~l~~s~~~~~il~N~~~~~~~~~ 57 (573)
++=++..+.++|+.+..-.+++..- ....++..+.+-+++.++.+..+.
T Consensus 1177 acEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIv 1231 (1634)
T PLN03223 1177 AMEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIM 1231 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHH
Confidence 3446666777777777655555421 233566888888877777755553
No 128
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.49 E-value=6.9 Score=38.96 Aligned_cols=33 Identities=12% Similarity=0.180 Sum_probs=30.4
Q ss_pred CCCcccccccccccceEecccccccHHHHHHHH
Q 008218 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWL 320 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl 320 (573)
..+.|+.|+....+|...|=||+|+.+||.+.+
T Consensus 42 ~FdcCsLtLqPc~dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDPVITPDGYLFDREAILEYI 74 (303)
T ss_pred CcceeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence 456899999999999999999999999999976
No 129
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=56.55 E-value=1.5e+02 Score=33.26 Aligned_cols=22 Identities=9% Similarity=0.362 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHhhhcCCC
Q 008218 495 FIENQIEVLQNQLQLLQKSKPE 516 (573)
Q Consensus 495 ~~~s~~~~l~~~l~~l~~~~~~ 516 (573)
.++..+++|+|+-.-|.+..++
T Consensus 224 ~l~kemdilkney~kvk~~e~~ 245 (782)
T PF07218_consen 224 KLTKEMDILKNEYIKVKEEEEK 245 (782)
T ss_pred HHHHHHHHHhhhhHHHHHHHHh
Confidence 4566777788777666554443
No 130
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.20 E-value=6 Score=42.66 Aligned_cols=35 Identities=34% Similarity=0.656 Sum_probs=26.5
Q ss_pred CCCcccccccccccce----EecccccccHHHHHHHHhc
Q 008218 288 SDSTCIICREEMTTAK----KLICGHLFHVHCLRSWLER 322 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~----~l~C~H~Fh~~Cl~~wl~~ 322 (573)
...+|.||..+...++ ...|+|.||..|+++.++.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 4668999995444432 3469999999999988863
No 131
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=55.37 E-value=10 Score=39.05 Aligned_cols=49 Identities=20% Similarity=0.526 Sum_probs=35.1
Q ss_pred cCCCccccccccccc-----------------ce--EecccccccHHHHHHHHhc---------CCCCCCCCccccC
Q 008218 287 ASDSTCIICREEMTT-----------------AK--KLICGHLFHVHCLRSWLER---------QHTCPTCRALVVP 335 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~-----------------~~--~l~C~H~Fh~~Cl~~wl~~---------~~~CP~Cr~~i~~ 335 (573)
..+.+|++|+..=.- +. ..||||+--.+-.+=|-+- +..||.|-..+..
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 346789999875321 11 2489999988888889764 4569999877643
No 132
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.64 E-value=7.7 Score=44.69 Aligned_cols=43 Identities=26% Similarity=0.523 Sum_probs=31.4
Q ss_pred CCCcccccccccc-------cceEecccccccHHHHHHHHhcCCCCCCCCc
Q 008218 288 SDSTCIICREEMT-------TAKKLICGHLFHVHCLRSWLERQHTCPTCRA 331 (573)
Q Consensus 288 ~~~~C~IC~~~~~-------~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~ 331 (573)
-+..|.-|.+... ....+.|||.||..|+..-..++. |-.|..
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~~~ 832 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIESG 832 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChhhc
Confidence 3458999988764 234678999999999987765544 666643
No 133
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=54.06 E-value=4.2 Score=43.21 Aligned_cols=48 Identities=23% Similarity=0.535 Sum_probs=0.0
Q ss_pred CCCcccccccccc-----------------cce--EecccccccHHHHHHHHhc---------CCCCCCCCccccC
Q 008218 288 SDSTCIICREEMT-----------------TAK--KLICGHLFHVHCLRSWLER---------QHTCPTCRALVVP 335 (573)
Q Consensus 288 ~~~~C~IC~~~~~-----------------~~~--~l~C~H~Fh~~Cl~~wl~~---------~~~CP~Cr~~i~~ 335 (573)
...+|++|+..=. .+. ..||||+--.+..+-|-+- +..||.|-.++..
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 3678999986532 111 3489999999999999754 3469999887753
No 134
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.80 E-value=7.9 Score=39.30 Aligned_cols=34 Identities=24% Similarity=0.628 Sum_probs=29.7
Q ss_pred CCcccccccccccceEecc----cccccHHHHHHHHhc
Q 008218 289 DSTCIICREEMTTAKKLIC----GHLFHVHCLRSWLER 322 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C----~H~Fh~~Cl~~wl~~ 322 (573)
-..|.+|.|.+++.-.+.| .|.||..|-++-+++
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccceecccCHHHHHh
Confidence 3679999999999888877 799999999998865
No 135
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=49.77 E-value=22 Score=27.26 Aligned_cols=44 Identities=25% Similarity=0.708 Sum_probs=32.6
Q ss_pred Ccccccccccccce--Eecccc--cccHHHHHHHHhcCCCCCCCCccccC
Q 008218 290 STCIICREEMTTAK--KLICGH--LFHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 290 ~~C~IC~~~~~~~~--~l~C~H--~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
..|--|-.++.... ..-|.+ .||..|.+..+ +..||.|...+..
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 46777877775433 455766 59999999877 5789999887754
No 136
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=47.16 E-value=8.4 Score=39.79 Aligned_cols=45 Identities=18% Similarity=0.280 Sum_probs=23.0
Q ss_pred cCCCcccccccccccceEec-----ccccccHHHHHHHHhcCCCCCCCCc
Q 008218 287 ASDSTCIICREEMTTAKKLI-----CGHLFHVHCLRSWLERQHTCPTCRA 331 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~-----C~H~Fh~~Cl~~wl~~~~~CP~Cr~ 331 (573)
.....|++|-..-.-..... -.|.+|.-|-..|-.....||.|-.
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred ccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 44579999987654333221 2567888899999888889999954
No 137
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=45.84 E-value=10 Score=38.36 Aligned_cols=45 Identities=27% Similarity=0.709 Sum_probs=32.6
Q ss_pred CCcccccccccccce--Ee-----cccccccHHHHHHHHhc---------CCCCCCCCccc
Q 008218 289 DSTCIICREEMTTAK--KL-----ICGHLFHVHCLRSWLER---------QHTCPTCRALV 333 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~--~l-----~C~H~Fh~~Cl~~wl~~---------~~~CP~Cr~~i 333 (573)
...|.+|.+++.+.+ ++ -|+-.+|..|+-.-+.. ...||.|++-+
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 368999999995433 22 27778999999984422 44799998744
No 138
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=43.48 E-value=1.3e+02 Score=35.26 Aligned_cols=47 Identities=26% Similarity=0.427 Sum_probs=23.6
Q ss_pred hhhhcCCchHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHH-HHhhHHHHHH
Q 008218 34 VYLSTSKISLVLLMNMGLVIMCILWQLIKKVFLGSLREAEVERL-NEQSRREIME 87 (573)
Q Consensus 34 v~l~~s~~~~~il~N~~~~~~~~~~~~~~~~ffG~Lr~~E~e~l-~e~~~~~v~~ 87 (573)
|.|++++++.+ -+|+.-.+-++-.+++ +||..+.+.= .++..+.++-
T Consensus 167 VsL~~npVSwv--n~Fgvegl~ll~~~Lk-----rl~dsk~~~~~~~k~~~eiIr 214 (1102)
T KOG1924|consen 167 VSLTSNPVSWV--NKFGVEGLGLLLDVLK-----RLRDSKVGSKLDIKNLQEIIR 214 (1102)
T ss_pred hhhcCCccHHH--HHhhhhhHHHHHHHHH-----HHHhhhhhhhhHHHHHHHHHH
Confidence 45666665532 3444444444444444 5677666533 4454444444
No 139
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=43.19 E-value=8.7 Score=43.28 Aligned_cols=40 Identities=30% Similarity=0.757 Sum_probs=25.6
Q ss_pred CCCccccccccc-----c---cceEecccccccHHHHHHHHhcCCCCCCCC
Q 008218 288 SDSTCIICREEM-----T---TAKKLICGHLFHVHCLRSWLERQHTCPTCR 330 (573)
Q Consensus 288 ~~~~C~IC~~~~-----~---~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr 330 (573)
....|.+|...- + .-+...|+++||..|++. .+..||.|-
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~ 557 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRCE 557 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCchH
Confidence 456788883221 0 012346999999999754 445599994
No 140
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=42.58 E-value=8.2 Score=41.12 Aligned_cols=43 Identities=30% Similarity=0.695 Sum_probs=0.0
Q ss_pred cCCCcccccccccccc--------------eEecccccccHHHHHHHHh------cCCCCCCCCcc
Q 008218 287 ASDSTCIICREEMTTA--------------KKLICGHLFHVHCLRSWLE------RQHTCPTCRAL 332 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~--------------~~l~C~H~Fh~~Cl~~wl~------~~~~CP~Cr~~ 332 (573)
.....|++=+..+.-+ +-+.|||++.+ ..|-. ...+||+||..
T Consensus 275 a~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 275 AGRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGY---HNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp ------------------------------------------------------------------
T ss_pred hcCCCCCcCCCccccccccccccccccCceeeccccceeee---cccccccccccccccCCCcccc
Confidence 3455677666555322 13569998664 35643 24579999874
No 141
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.86 E-value=13 Score=40.13 Aligned_cols=43 Identities=23% Similarity=0.564 Sum_probs=31.5
Q ss_pred cCCCcccccccccccce-----EecccccccHHHHHHHHhcCCCCCCC
Q 008218 287 ASDSTCIICREEMTTAK-----KLICGHLFHVHCLRSWLERQHTCPTC 329 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~-----~l~C~H~Fh~~Cl~~wl~~~~~CP~C 329 (573)
..-..|+.|.-.++-.. .-.|||.||+.|...|...+..|..|
T Consensus 304 ~~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 304 KRWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred HhcCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 34567888877664322 22599999999999998877777655
No 142
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.31 E-value=32 Score=35.46 Aligned_cols=49 Identities=29% Similarity=0.688 Sum_probs=41.9
Q ss_pred cCCCcccccccccccceEe-cccccccHHHHHHHHhcCCCCCCCCccccC
Q 008218 287 ASDSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
...+.|-||...+..+.+. -|.|.|+..|...|......||.|+....+
T Consensus 103 ~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred CCccceeeeeeeEEecccccCceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 3467899999999888766 499999999999999999999999986643
No 143
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.26 E-value=15 Score=40.45 Aligned_cols=36 Identities=33% Similarity=0.601 Sum_probs=30.5
Q ss_pred cCCCccccccccccc-ceEecccccccHHHHHHHHhc
Q 008218 287 ASDSTCIICREEMTT-AKKLICGHLFHVHCLRSWLER 322 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~-~~~l~C~H~Fh~~Cl~~wl~~ 322 (573)
.....|-||.+.+.. ...+.|||.||..|....+..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 456789999999886 556799999999999998865
No 144
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=39.71 E-value=14 Score=23.81 Aligned_cols=8 Identities=38% Similarity=0.912 Sum_probs=3.8
Q ss_pred cccccccc
Q 008218 292 CIICREEM 299 (573)
Q Consensus 292 C~IC~~~~ 299 (573)
|+-|....
T Consensus 3 CP~C~~~V 10 (26)
T PF10571_consen 3 CPECGAEV 10 (26)
T ss_pred CCCCcCCc
Confidence 44454444
No 145
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=39.11 E-value=16 Score=35.71 Aligned_cols=39 Identities=28% Similarity=0.796 Sum_probs=26.7
Q ss_pred CCCcccccccc-c----ccce---EecccccccHHHHHHHHhcCCCCCCCCc
Q 008218 288 SDSTCIICREE-M----TTAK---KLICGHLFHVHCLRSWLERQHTCPTCRA 331 (573)
Q Consensus 288 ~~~~C~IC~~~-~----~~~~---~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~ 331 (573)
.+..|-+|.++ . +... --.|+-+||..|.. ...||.|..
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 46789999864 1 1111 12599999999975 267999943
No 146
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=38.18 E-value=2.9e+02 Score=31.71 Aligned_cols=16 Identities=25% Similarity=0.642 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhhhc
Q 008218 498 NQIEVLQNQLQLLQKS 513 (573)
Q Consensus 498 s~~~~l~~~l~~l~~~ 513 (573)
+|.+..|||..++++.
T Consensus 430 ~qlqaFKnEVa~lkkT 445 (678)
T KOG0193|consen 430 EQLQAFKNEVAVLKKT 445 (678)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 4777777887777664
No 147
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=37.20 E-value=43 Score=27.50 Aligned_cols=47 Identities=19% Similarity=0.475 Sum_probs=20.3
Q ss_pred CCCccccccccccc---ceE----ecccccccHHHHHHHH-hcCCCCCCCCcccc
Q 008218 288 SDSTCIICREEMTT---AKK----LICGHLFHVHCLRSWL-ERQHTCPTCRALVV 334 (573)
Q Consensus 288 ~~~~C~IC~~~~~~---~~~----l~C~H~Fh~~Cl~~wl-~~~~~CP~Cr~~i~ 334 (573)
....|-||-|+.-. +.. -.|+--.|..|..-=. +.++.||-|+.+..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 46689999998753 221 2477788999987544 44678999997664
No 148
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=37.02 E-value=33 Score=26.25 Aligned_cols=37 Identities=19% Similarity=0.609 Sum_probs=25.9
Q ss_pred CCCcccccccccccc-eEe---cccccccHHHHHHHHhcCCCCCC
Q 008218 288 SDSTCIICREEMTTA-KKL---ICGHLFHVHCLRSWLERQHTCPT 328 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~-~~l---~C~H~Fh~~Cl~~wl~~~~~CP~ 328 (573)
....|.+|-+.+.+. +.+ .||-.+|+.|... ...|-.
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~ 44 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCIN 44 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEe
Confidence 356899999999633 232 5999999999643 345544
No 149
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=35.32 E-value=96 Score=29.13 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=29.0
Q ss_pred CcchhHHHHHhHHHHHHHHHHHHHHHhhhcCCCCChHhHHHHHH
Q 008218 484 TPVSQLEAQRKFIENQIEVLQNQLQLLQKSKPEGNVETILQCHQ 527 (573)
Q Consensus 484 ~~~sq~~a~~~~~~s~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 527 (573)
.++.++......++.+++.++.+|..+++....-++++++...+
T Consensus 109 ~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~ 152 (169)
T PF07106_consen 109 PTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEK 152 (169)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 44566777777777777777777777777666666666655544
No 150
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=34.30 E-value=30 Score=23.23 Aligned_cols=35 Identities=23% Similarity=0.642 Sum_probs=24.2
Q ss_pred cccccccccccc-eEe-cccccccHHHHHHHHhcCCCCCCCCccc
Q 008218 291 TCIICREEMTTA-KKL-ICGHLFHVHCLRSWLERQHTCPTCRALV 333 (573)
Q Consensus 291 ~C~IC~~~~~~~-~~l-~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i 333 (573)
.|..|.+.+... ..+ .=+..||..| ..|..|+.++
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEEEeCCccccccC--------CCCcccCCcC
Confidence 377888877664 333 3467888887 4788887765
No 151
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=34.25 E-value=45 Score=34.95 Aligned_cols=47 Identities=13% Similarity=0.177 Sum_probs=32.0
Q ss_pred CcchhHHHHHhHHHHHHHHHHHHHHHhhhc-CCCCChHhHHHHHHHhh
Q 008218 484 TPVSQLEAQRKFIENQIEVLQNQLQLLQKS-KPEGNVETILQCHQVAK 530 (573)
Q Consensus 484 ~~~sq~~a~~~~~~s~~~~l~~~l~~l~~~-~~~~~~~~~~~~~~~~~ 530 (573)
-+++.++.....+|.|+.+||.|++.|++. ....+-|+---..+|+.
T Consensus 35 ~~~~~~~~~i~~Lq~QI~~Lq~ei~~l~~~~~~n~~~~f~tYsSkv~~ 82 (383)
T PF12097_consen 35 QSNQNDQQEISELQKQIQQLQAEINQLEEQNNSNNSSQFTTYSSKVDD 82 (383)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccceehhhhhcc
Confidence 344667778889999999999999999977 33333344333344433
No 152
>PLN02189 cellulose synthase
Probab=34.03 E-value=40 Score=40.60 Aligned_cols=47 Identities=23% Similarity=0.535 Sum_probs=33.3
Q ss_pred CCCccccccccccc---ce-Ee---cccccccHHHHHHHH-hcCCCCCCCCcccc
Q 008218 288 SDSTCIICREEMTT---AK-KL---ICGHLFHVHCLRSWL-ERQHTCPTCRALVV 334 (573)
Q Consensus 288 ~~~~C~IC~~~~~~---~~-~l---~C~H~Fh~~Cl~~wl-~~~~~CP~Cr~~i~ 334 (573)
....|.||-|+... +. -. .|+--.|..|.+-=- +.++.||-|+....
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 45689999999753 22 22 377779999984322 34678999998775
No 153
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=33.46 E-value=24 Score=26.44 Aligned_cols=37 Identities=19% Similarity=0.584 Sum_probs=26.5
Q ss_pred ccccccccccceEe--cccccccHHHHHHHHhcCCCCCCCCccccCC
Q 008218 292 CIICREEMTTAKKL--ICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (573)
Q Consensus 292 C~IC~~~~~~~~~l--~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~ 336 (573)
|.-|.+.+...... .-+..||..| .+|-.|+.++...
T Consensus 1 C~~C~~~I~~~~~~~~~~~~~~H~~C--------f~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKAMGKFWHPEC--------FKCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEEEEETTEEEETTT--------SBETTTTCBTTTS
T ss_pred CCCCCCCccCcEEEEEeCCcEEEccc--------cccCCCCCccCCC
Confidence 66777777755544 6778888877 4788888877543
No 154
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=33.29 E-value=29 Score=35.96 Aligned_cols=42 Identities=26% Similarity=0.507 Sum_probs=30.7
Q ss_pred CCCccccccccc---ccceEecccccccHHHHHHHHhc---CCCCCCC
Q 008218 288 SDSTCIICREEM---TTAKKLICGHLFHVHCLRSWLER---QHTCPTC 329 (573)
Q Consensus 288 ~~~~C~IC~~~~---~~~~~l~C~H~Fh~~Cl~~wl~~---~~~CP~C 329 (573)
.-..|++--+.- ..|..+.|||+.-.+-++..-+. ...||.|
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 456888754433 35678999999999998876544 2359999
No 155
>PF12443 AKNA: AT-hook-containing transcription factor; InterPro: IPR022150 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. This family contains a transcription factor which regulates the expression of the costimulatory molecules on lymphocytes.
Probab=32.80 E-value=1.3e+02 Score=26.29 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=34.3
Q ss_pred CcchhHHHHHhHHHHHHHHHHHHHHHhhhcCCCCChH
Q 008218 484 TPVSQLEAQRKFIENQIEVLQNQLQLLQKSKPEGNVE 520 (573)
Q Consensus 484 ~~~sq~~a~~~~~~s~~~~l~~~l~~l~~~~~~~~~~ 520 (573)
-+.++.+++--.+..+.|.||..+++.++..++.+.|
T Consensus 45 ~~~~ege~~~qkL~eqteeLK~kvqe~sk~i~~~~~~ 81 (106)
T PF12443_consen 45 DKIREGEQMIQKLGEQTEELKDKVQEFSKRIEQDSPD 81 (106)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCcc
Confidence 3458999999999999999999999999999999987
No 156
>COG1615 Uncharacterized conserved protein [Function unknown]
Probab=32.79 E-value=5.5e+02 Score=30.14 Aligned_cols=50 Identities=20% Similarity=0.430 Sum_probs=27.1
Q ss_pred HHHHhcccCcHHHHHHHHHhhHHHHHHHHhhhhhccccchhHHHHHHHHHHHH-HHHHHHHhhhhccccc
Q 008218 61 IKKVFLGSLREAEVERLNEQSRREIMEILFAITIFRQDFSVSFLAMVTTLLLI-KALHWLAQKRVEYIET 129 (573)
Q Consensus 61 ~~~~ffG~Lr~~E~e~l~e~~~~~v~~~lf~i~if~~~~~~~~~~l~~~ll~l-k~fh~l~~dR~e~l~~ 129 (573)
+....||.+|..|.....-+ .=-+.+..+..+++++ .+-||| ||.|.+..
T Consensus 167 v~~Yif~~irlse~~~~ls~-----------------~A~~q~a~~~G~~vlL~av~ywL--~Ryell~~ 217 (885)
T COG1615 167 VTHYIFGGIRLSEFRGALSR-----------------SARVQLASLLGALVLLKAVAYWL--DRYELLSR 217 (885)
T ss_pred HHHHHhhceeeccccccccc-----------------hhhHHHHHHHHHHHHHHHHHHHH--HHhHhhhc
Confidence 77889999995553211111 0012233333333333 366888 78998874
No 157
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=32.56 E-value=1.2e+02 Score=33.08 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=40.8
Q ss_pred CCcchhHHHHHhHHHHHHHHHHHHHHHhhhcCCCCChHhHHHHH-HHhhccceehhhHHHHhh
Q 008218 483 NTPVSQLEAQRKFIENQIEVLQNQLQLLQKSKPEGNVETILQCH-QVAKERQLHLHLFLHQTL 544 (573)
Q Consensus 483 ~~~~sq~~a~~~~~~s~~~~l~~~l~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 544 (573)
+...+-+......++-.++-.+.|-++.+..++++..|...+++ .+--|+|+-.|+=+..++
T Consensus 499 SS~eTll~niq~llkva~dnar~qekQiq~Ek~ELkmd~lrerelreslekql~~ErklR~~~ 561 (641)
T KOG3915|consen 499 SSIETLLTNIQGLLKVAIDNARAQEKQIQLEKTELKMDFLRERELRESLEKQLAMERKLRAIV 561 (641)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666667777777777777888888888887765553 225567776666555443
No 158
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=31.94 E-value=3.5e+02 Score=32.40 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhhhcCCCC
Q 008218 496 IENQIEVLQNQLQLLQKSKPEG 517 (573)
Q Consensus 496 ~~s~~~~l~~~l~~l~~~~~~~ 517 (573)
++.|...|...|+.++.-..++
T Consensus 229 Lr~QvrdLtEkLetlR~kR~ED 250 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLKRAED 250 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhhhh
Confidence 5555555555555555444333
No 159
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=30.65 E-value=6.5 Score=31.62 Aligned_cols=40 Identities=25% Similarity=0.647 Sum_probs=21.8
Q ss_pred CcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCcccc
Q 008218 290 STCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 290 ~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
..|+.|..+++... +|..|..|-.. +.....||-|..++.
T Consensus 2 ~~CP~C~~~L~~~~----~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET----TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC----CEEECcccccc-ceecccCCCcccHHH
Confidence 46999988876443 66677777554 334567999988773
No 160
>PLN02400 cellulose synthase
Probab=30.48 E-value=2.6e+02 Score=34.18 Aligned_cols=47 Identities=17% Similarity=0.497 Sum_probs=32.7
Q ss_pred CCCccccccccccc---ce-Ee---cccccccHHHHHH-HHhcCCCCCCCCcccc
Q 008218 288 SDSTCIICREEMTT---AK-KL---ICGHLFHVHCLRS-WLERQHTCPTCRALVV 334 (573)
Q Consensus 288 ~~~~C~IC~~~~~~---~~-~l---~C~H~Fh~~Cl~~-wl~~~~~CP~Cr~~i~ 334 (573)
....|-||-|+... +. -. .|+--.|+.|.+- .-+.++.||-|+....
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 45689999999753 22 22 4666699999842 2234678999998775
No 161
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=30.41 E-value=17 Score=37.13 Aligned_cols=162 Identities=17% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhccCchhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHhhHHHHHHHHh
Q 008218 11 SFMATLAVVYHAFNSRRQFYPSMVYLSTSKISLVLLMNMGLVIMCILWQLIKKVFLGSLREAEVERLNEQSRREIMEILF 90 (573)
Q Consensus 11 S~~~~~~~v~~a~~~~~~fy~~~v~l~~s~~~~~il~N~~~~~~~~~~~~~~~~ffG~Lr~~E~e~l~e~~~~~v~~~lf 90 (573)
|++..++.+.-|...- ||-.|--+++ ...++|.-|+++++++ ++
T Consensus 24 ~l~~~~llll~ail~w--~~iimsd~t~--~a~~vl~sfAvvliiI--------------------------------Ii 67 (381)
T PF05297_consen 24 SLLFGLLLLLVAILVW--FFIIMSDLTQ--GALTVLYSFAVVLIII--------------------------------II 67 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHH--HHHHHhcccc--chHHHHHHHHHHHHHH--------------------------------HH
Q ss_pred hhhhccccchhHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 008218 91 AITIFRQDFSVSFLAMVTTLLLIKALHWLAQKRVEYIETTPTVPLLSHIRIVSFMSFLLLVDSLFLYSSVKFLLQTRQAS 170 (573)
Q Consensus 91 ~i~if~~~~~~~~~~l~~~ll~lk~fh~l~~dR~e~l~~sp~~~~~~h~R~~~~l~~ll~~d~~~~~~~~~~~~~~~~~~ 170 (573)
+|.+|+..+-.-...+-++++ +-.+.-+---+..-..-++.++++++.+-..+..++.-+++...+++
T Consensus 68 IImlF~RrLLCPLGlLCiili------------mi~lLv~~L~tLtGQ~LF~Gi~~l~l~~lLaL~vW~Ym~lLr~~GAs 135 (381)
T PF05297_consen 68 IIMLFKRRLLCPLGLLCIILI------------MIVLLVSMLWTLTGQTLFVGIVILFLCCLLALGVWFYMWLLRELGAS 135 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhcCcchHHHHHHH------------HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhheecccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008218 171 VSLFFSFEYMILATTTVSIFVKYVFYVSDMLMEGQWERKAVYTFYLELIRDLLHLSMYLCFFLVIFM 237 (573)
Q Consensus 171 v~~~f~fE~~il~~~~~~~~~kY~~~~~d~~~~~~we~k~~~~fy~el~~~li~l~~~l~f~~~i~~ 237 (573)
+-.+.+|=.+.++...+.++..|.-..+ ..++.++..+++|+...+.+++
T Consensus 136 ~WtiLaFcLAF~LaivlLIIAv~L~qaW-----------------fT~L~dL~WL~LFlaiLIWlY~ 185 (381)
T PF05297_consen 136 FWTILAFCLAFLLAIVLLIIAVLLHQAW-----------------FTILVDLYWLLLFLAILIWLYV 185 (381)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHh
No 162
>PLN02436 cellulose synthase A
Probab=29.98 E-value=51 Score=39.84 Aligned_cols=47 Identities=26% Similarity=0.545 Sum_probs=33.1
Q ss_pred CCCccccccccccc---ce-Ee---cccccccHHHHHHHH-hcCCCCCCCCcccc
Q 008218 288 SDSTCIICREEMTT---AK-KL---ICGHLFHVHCLRSWL-ERQHTCPTCRALVV 334 (573)
Q Consensus 288 ~~~~C~IC~~~~~~---~~-~l---~C~H~Fh~~Cl~~wl-~~~~~CP~Cr~~i~ 334 (573)
....|-||-|+... +. -. .|+--.|..|.+-=- +.++.||-|++...
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 45589999999743 32 22 366669999984322 34678999998775
No 163
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.54 E-value=54 Score=37.40 Aligned_cols=31 Identities=23% Similarity=0.554 Sum_probs=23.8
Q ss_pred CCcccccccccccce----EecccccccHHHHHHH
Q 008218 289 DSTCIICREEMTTAK----KLICGHLFHVHCLRSW 319 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~----~l~C~H~Fh~~Cl~~w 319 (573)
...|-.|...|..-. .-.||-+||..|-..-
T Consensus 165 ~~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s 199 (634)
T KOG1818|consen 165 SEECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKS 199 (634)
T ss_pred ccccceeeeeeeeccccccccccchhhccCccccc
Confidence 478999999886432 3479999999996553
No 164
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=28.20 E-value=5e+02 Score=30.49 Aligned_cols=8 Identities=25% Similarity=0.571 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 008218 250 YETFRNFR 257 (573)
Q Consensus 250 ~~~~~~~~ 257 (573)
...||++.
T Consensus 703 QkAWRrfv 710 (1106)
T KOG0162|consen 703 QKAWRRFV 710 (1106)
T ss_pred HHHHHHHH
Confidence 34444443
No 165
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=27.59 E-value=3.4e+02 Score=31.11 Aligned_cols=10 Identities=50% Similarity=1.198 Sum_probs=6.2
Q ss_pred cccccccHHH
Q 008218 306 ICGHLFHVHC 315 (573)
Q Consensus 306 ~C~H~Fh~~C 315 (573)
.|+-.||..|
T Consensus 208 ~C~~KfHq~C 217 (678)
T KOG0193|consen 208 TCGYKFHQSC 217 (678)
T ss_pred CCCCcccccc
Confidence 4666666666
No 166
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=26.31 E-value=1.3e+03 Score=28.43 Aligned_cols=19 Identities=11% Similarity=0.170 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008218 174 FFSFEYMILATTTVSIFVK 192 (573)
Q Consensus 174 ~f~fE~~il~~~~~~~~~k 192 (573)
++++-|++++-....-++|
T Consensus 1265 liccaffiiFgilgvqLFk 1283 (1956)
T KOG2302|consen 1265 LICCAFFIIFGILGVQLFK 1283 (1956)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3455555555444444445
No 167
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=26.31 E-value=26 Score=36.16 Aligned_cols=42 Identities=29% Similarity=0.679 Sum_probs=24.9
Q ss_pred cCCCcccccccccccc--------------eEecccccccHHHHHHHHhc------CCCCCCCCc
Q 008218 287 ASDSTCIICREEMTTA--------------KKLICGHLFHVHCLRSWLER------QHTCPTCRA 331 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~--------------~~l~C~H~Fh~~Cl~~wl~~------~~~CP~Cr~ 331 (573)
..-..|++=+..+.-| +-|.|||+-.. ..|=.+ ...||+||.
T Consensus 288 A~RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~---H~WG~~e~~g~~~r~CPmC~~ 349 (429)
T KOG3842|consen 288 AARPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGY---HNWGVRENTGQRERECPMCRV 349 (429)
T ss_pred ccCCCCCcccceeecccccccccccccCCeEEEeccccccc---cccccccccCcccCcCCeeee
Confidence 3456788777665432 23679996221 245422 446999986
No 168
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=26.30 E-value=3e+02 Score=28.29 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCChHhHHHHHHH---hhccceehhhHHHHhhhccc
Q 008218 496 IENQIEVLQNQLQLLQKSKPEGNVETILQCHQV---AKERQLHLHLFLHQTLGAMG 548 (573)
Q Consensus 496 ~~s~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 548 (573)
.++.|+.||+||.-++. .| +||+=|++++ .||+.+-+.. |.|++.-|+
T Consensus 87 RetEI~eLksQL~RMrE---DW-IEEECHRVEAQLALKEARkEIkQ-LkQvieTmr 137 (305)
T PF15290_consen 87 RETEIDELKSQLARMRE---DW-IEEECHRVEAQLALKEARKEIKQ-LKQVIETMR 137 (305)
T ss_pred hHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 45677788888877652 12 3444333332 4454444433 445555443
No 169
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=26.28 E-value=38 Score=26.89 Aligned_cols=13 Identities=31% Similarity=0.792 Sum_probs=9.1
Q ss_pred cccHHHHHHHHhc
Q 008218 310 LFHVHCLRSWLER 322 (573)
Q Consensus 310 ~Fh~~Cl~~wl~~ 322 (573)
.||+.||.+|...
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999853
No 170
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.13 E-value=13 Score=38.22 Aligned_cols=45 Identities=24% Similarity=0.492 Sum_probs=35.4
Q ss_pred CCCccccccccccc------ceEec--------ccccccHHHHHHHHhcC-CCCCCCCcc
Q 008218 288 SDSTCIICREEMTT------AKKLI--------CGHLFHVHCLRSWLERQ-HTCPTCRAL 332 (573)
Q Consensus 288 ~~~~C~IC~~~~~~------~~~l~--------C~H~Fh~~Cl~~wl~~~-~~CP~Cr~~ 332 (573)
.+..|.||...+.. |..+. |||..|..|++.-+.+. ..||.|+..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 45679999988873 23445 99999999999988654 579999875
No 171
>KOG4193 consensus G protein-coupled receptors [Signal transduction mechanisms]
Probab=26.06 E-value=1.1e+03 Score=27.34 Aligned_cols=71 Identities=18% Similarity=0.402 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHhcccCcHHHHHHHHHhh--HHHHHHHHhhhhhccccchh---HHHHHHHHHHHHHHHHHHHhh
Q 008218 51 LVIMCILWQLIKKVFLGSLREAEVERLNEQS--RREIMEILFAITIFRQDFSV---SFLAMVTTLLLIKALHWLAQK 122 (573)
Q Consensus 51 ~~~~~~~~~~~~~~ffG~Lr~~E~e~l~e~~--~~~v~~~lf~i~if~~~~~~---~~~~l~~~ll~lk~fh~l~~d 122 (573)
+.+.+++.-++..++|-.++... -.+.-.+ =-++.+++|.+.+++....+ ..++.+....+|..|-|++-+
T Consensus 332 iSlvcL~lti~ty~~~~~l~~~~-~~i~~~l~~~L~l~~l~fL~~~~~~~~~~~~C~~~a~llhff~LaaF~Wm~le 407 (610)
T KOG4193|consen 332 ISLVCLLLTIATYLLFRKLQNDR-TKIHINLCLCLFLAELLFLLGIDRTSTSVVLCIAAAILLHFFFLAAFFWMLLE 407 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhcccccccCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555666777777777776 2222222 22445677777777655443 233344445667777777643
No 172
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.97 E-value=3.6e+02 Score=27.27 Aligned_cols=44 Identities=11% Similarity=0.068 Sum_probs=25.8
Q ss_pred CCCCcchhHHHHHhHHHHHHHHHHHHHHHhh-------hcCCCCChHhHHH
Q 008218 481 TQNTPVSQLEAQRKFIENQIEVLQNQLQLLQ-------KSKPEGNVETILQ 524 (573)
Q Consensus 481 ~~~~~~sq~~a~~~~~~s~~~~l~~~l~~l~-------~~~~~~~~~~~~~ 524 (573)
.+..+++.-=.-...++..+..|+..|++-+ +-.++++.|.+.|
T Consensus 215 ~~D~~~~dh~V~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad~e~~ 265 (305)
T KOG3990|consen 215 FGDRDPGDHMVKIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKADKEYQ 265 (305)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcchhHH
Confidence 3344444444455566777777777776633 4456677774444
No 173
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.82 E-value=55 Score=37.67 Aligned_cols=44 Identities=27% Similarity=0.557 Sum_probs=24.5
Q ss_pred cccccccccccceEecccc-cccHHHHHHHHh--c----CCCCCCCCcccc
Q 008218 291 TCIICREEMTTAKKLICGH-LFHVHCLRSWLE--R----QHTCPTCRALVV 334 (573)
Q Consensus 291 ~C~IC~~~~~~~~~l~C~H-~Fh~~Cl~~wl~--~----~~~CP~Cr~~i~ 334 (573)
.|+||-...+-...=.||| .-|..|...... . +..||.||..+.
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcccccccccCccccccee
Confidence 4666666655555556666 566666655432 1 234566666443
No 174
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=24.68 E-value=31 Score=36.02 Aligned_cols=44 Identities=18% Similarity=0.329 Sum_probs=29.7
Q ss_pred CCCcccccccccccceEe------cccccccHHHHHHHHhcCCCCCCCCc
Q 008218 288 SDSTCIICREEMTTAKKL------ICGHLFHVHCLRSWLERQHTCPTCRA 331 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l------~C~H~Fh~~Cl~~wl~~~~~CP~Cr~ 331 (573)
....|++|-..-...... -=.|..|.-|-.+|-.....||.|..
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 445899998764322111 12355667788899888889999965
No 175
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=22.48 E-value=40 Score=35.20 Aligned_cols=45 Identities=16% Similarity=0.411 Sum_probs=30.8
Q ss_pred cCCCcccccccccccce-Ee--c--ccccccHHHHHHHHhcCCCCCCCCc
Q 008218 287 ASDSTCIICREEMTTAK-KL--I--CGHLFHVHCLRSWLERQHTCPTCRA 331 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~-~l--~--C~H~Fh~~Cl~~wl~~~~~CP~Cr~ 331 (573)
+....|++|-..-.... ++ . =.|..|.-|-.+|-.....||.|-.
T Consensus 185 ~~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 185 EQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred cCCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 45678999987643221 11 1 2356677788899888889999964
No 177
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=22.17 E-value=46 Score=29.50 Aligned_cols=43 Identities=16% Similarity=0.454 Sum_probs=24.3
Q ss_pred CCCccccccccccc----ce-EecccccccHHHHHHHHhcCC--CCCCCCc
Q 008218 288 SDSTCIICREEMTT----AK-KLICGHLFHVHCLRSWLERQH--TCPTCRA 331 (573)
Q Consensus 288 ~~~~C~IC~~~~~~----~~-~l~C~H~Fh~~Cl~~wl~~~~--~CP~Cr~ 331 (573)
++..|++|...+.- +. -..|+|.+|..|-.. ..... .|.+|..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 56789999987642 22 235899888888533 11111 3666653
No 178
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=22.04 E-value=63 Score=33.52 Aligned_cols=44 Identities=11% Similarity=-0.142 Sum_probs=34.6
Q ss_pred CCCcccccccccccceEecccc-cccHHHHHHHHhcCCCCCCCCccc
Q 008218 288 SDSTCIICREEMTTAKKLICGH-LFHVHCLRSWLERQHTCPTCRALV 333 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H-~Fh~~Cl~~wl~~~~~CP~Cr~~i 333 (573)
....|-.|-+..-...-.+|+| .||.+|.. +.-..+||+|....
T Consensus 342 s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred hhcccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccc
Confidence 4567999988877777779999 59999987 55678999997543
No 179
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.97 E-value=1e+02 Score=35.44 Aligned_cols=39 Identities=21% Similarity=0.473 Sum_probs=26.9
Q ss_pred CCcccccccccc----cceEecccccccHHHHHHHHhcCCCCCCCC
Q 008218 289 DSTCIICREEMT----TAKKLICGHLFHVHCLRSWLERQHTCPTCR 330 (573)
Q Consensus 289 ~~~C~IC~~~~~----~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr 330 (573)
...|-+|...-. .+..+-|+-.+|+.| |..-.+.||.|-
T Consensus 654 ~r~C~vcq~pedse~~v~rt~~C~~~~C~~c---~~~~~~~~~vC~ 696 (717)
T KOG3726|consen 654 IRTCKVCQLPEDSETDVCRTTFCYTPYCVAC---SLDYASISEVCG 696 (717)
T ss_pred HHHHHHhcCCcCccccccCccccCCcchHhh---hhhhhccCcccC
Confidence 346778865432 234567999999998 555567899993
No 180
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.90 E-value=3.1e+02 Score=28.31 Aligned_cols=10 Identities=20% Similarity=0.265 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 008218 496 IENQIEVLQN 505 (573)
Q Consensus 496 ~~s~~~~l~~ 505 (573)
++..-|+|++
T Consensus 69 L~~rqeEL~R 78 (313)
T KOG3088|consen 69 LLKKQEELRR 78 (313)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 181
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=21.77 E-value=29 Score=27.33 Aligned_cols=33 Identities=21% Similarity=0.628 Sum_probs=17.1
Q ss_pred CCCcccccccccccceEe----cccccccHHHHHHHH
Q 008218 288 SDSTCIICREEMTTAKKL----ICGHLFHVHCLRSWL 320 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l----~C~H~Fh~~Cl~~wl 320 (573)
....|.+|...|.--.+- .||++||..|.....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 456899999999654322 599999998875443
No 182
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.15 E-value=1.2e+02 Score=24.20 Aligned_cols=38 Identities=18% Similarity=0.166 Sum_probs=28.9
Q ss_pred chhHHHHHhHHHHHHHHHHHHHHHhhhcCCCC--ChHhHH
Q 008218 486 VSQLEAQRKFIENQIEVLQNQLQLLQKSKPEG--NVETIL 523 (573)
Q Consensus 486 ~sq~~a~~~~~~s~~~~l~~~l~~l~~~~~~~--~~~~~~ 523 (573)
..+.+.+...++.+++.++.+...|++...++ ++|.++
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie 58 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIE 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 35777888888888888888888888777776 445553
No 183
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=20.45 E-value=99 Score=37.58 Aligned_cols=47 Identities=17% Similarity=0.555 Sum_probs=32.9
Q ss_pred CCCcccccccccccc---e-Ee---cccccccHHHHHH-HHhcCCCCCCCCcccc
Q 008218 288 SDSTCIICREEMTTA---K-KL---ICGHLFHVHCLRS-WLERQHTCPTCRALVV 334 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~---~-~l---~C~H~Fh~~Cl~~-wl~~~~~CP~Cr~~i~ 334 (573)
....|-||-|+.... . -. .|+--.|..|.+= .-+.++.||-|+....
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 456899999997532 2 22 4666699999843 2244678999998775
Done!