Query 008218
Match_columns 573
No_of_seqs 476 out of 2437
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 20:58:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008218.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008218hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x4j_A Ring finger protein 38; 99.3 1.6E-12 5.4E-17 105.2 3.7 50 286-335 20-72 (75)
2 2ect_A Ring finger protein 126 99.3 3.2E-12 1.1E-16 104.1 5.5 56 286-341 12-70 (78)
3 2kiz_A E3 ubiquitin-protein li 99.3 3.5E-12 1.2E-16 101.3 5.2 50 287-336 12-64 (69)
4 2ep4_A Ring finger protein 24; 99.2 4.4E-12 1.5E-16 102.2 5.2 51 287-337 13-66 (74)
5 2l0b_A E3 ubiquitin-protein li 99.2 2.5E-12 8.4E-17 108.3 3.7 49 287-335 38-89 (91)
6 1iym_A EL5; ring-H2 finger, ub 99.2 2.9E-12 1E-16 97.0 3.6 47 288-334 4-54 (55)
7 2ecl_A Ring-box protein 2; RNF 99.2 5.2E-12 1.8E-16 103.9 4.5 48 287-334 13-75 (81)
8 2ea6_A Ring finger protein 4; 99.2 5.1E-12 1.7E-16 100.1 3.9 48 287-334 13-67 (69)
9 2d8t_A Dactylidin, ring finger 99.2 5.3E-12 1.8E-16 101.0 3.9 49 287-335 13-61 (71)
10 3ng2_A RNF4, snurf, ring finge 99.2 4.6E-12 1.6E-16 101.0 3.4 50 287-336 8-64 (71)
11 2djb_A Polycomb group ring fin 99.2 1.1E-11 3.6E-16 99.5 5.4 51 287-337 13-64 (72)
12 2ecm_A Ring finger and CHY zin 99.2 5.8E-12 2E-16 95.3 3.5 48 287-334 3-54 (55)
13 2xeu_A Ring finger protein 4; 99.2 9.3E-12 3.2E-16 97.0 3.6 49 288-336 2-57 (64)
14 1v87_A Deltex protein 2; ring- 99.2 2.6E-11 9E-16 106.1 6.4 49 288-336 24-95 (114)
15 1chc_A Equine herpes virus-1 r 99.1 1.7E-11 5.8E-16 97.0 4.0 49 287-335 3-52 (68)
16 2ysl_A Tripartite motif-contai 99.1 3.1E-11 1.1E-15 96.8 5.2 50 287-336 18-70 (73)
17 3dpl_R Ring-box protein 1; ubi 99.1 2.2E-11 7.7E-16 105.2 4.6 48 287-334 35-100 (106)
18 2ecn_A Ring finger protein 141 99.1 1.4E-11 4.9E-16 98.1 2.7 50 287-337 13-62 (70)
19 2ecy_A TNF receptor-associated 99.1 3.1E-11 1E-15 95.1 4.4 50 287-336 13-63 (66)
20 2csy_A Zinc finger protein 183 99.1 2.7E-11 9.2E-16 99.4 4.2 48 287-334 13-60 (81)
21 4ayc_A E3 ubiquitin-protein li 99.1 3.8E-11 1.3E-15 108.9 4.8 48 288-335 52-99 (138)
22 2yur_A Retinoblastoma-binding 99.1 4.6E-11 1.6E-15 96.4 4.8 50 287-336 13-65 (74)
23 2ct2_A Tripartite motif protei 99.1 7E-11 2.4E-15 98.1 4.7 50 287-336 13-69 (88)
24 1t1h_A Gspef-atpub14, armadill 99.1 6.9E-11 2.3E-15 96.1 4.5 50 287-336 6-56 (78)
25 2ysj_A Tripartite motif-contai 99.0 1.5E-10 5E-15 90.2 5.0 43 287-329 18-63 (63)
26 2ecw_A Tripartite motif-contai 99.0 1.6E-10 5.6E-15 95.0 5.3 50 287-336 17-72 (85)
27 2egp_A Tripartite motif-contai 99.0 5.4E-11 1.8E-15 96.8 2.2 49 287-335 10-65 (79)
28 2ecv_A Tripartite motif-contai 99.0 2E-10 6.8E-15 94.5 5.3 50 287-336 17-72 (85)
29 3ztg_A E3 ubiquitin-protein li 99.0 1.6E-10 5.6E-15 97.0 4.8 48 287-334 11-61 (92)
30 3lrq_A E3 ubiquitin-protein li 99.0 7.5E-11 2.6E-15 100.9 2.1 48 288-335 21-70 (100)
31 4a0k_B E3 ubiquitin-protein li 99.0 4.2E-11 1.4E-15 105.1 0.4 48 287-334 46-111 (117)
32 2ecj_A Tripartite motif-contai 99.0 2.5E-10 8.4E-15 87.1 3.9 43 287-329 13-58 (58)
33 2y43_A E3 ubiquitin-protein li 99.0 1.8E-10 6.2E-15 98.2 3.3 48 288-335 21-69 (99)
34 2ckl_A Polycomb group ring fin 99.0 2.3E-10 7.9E-15 99.1 4.0 48 288-335 14-62 (108)
35 3fl2_A E3 ubiquitin-protein li 99.0 2.9E-10 9.9E-15 101.0 4.4 48 288-335 51-99 (124)
36 4ap4_A E3 ubiquitin ligase RNF 98.9 3.6E-10 1.2E-14 100.9 4.0 50 287-336 5-61 (133)
37 2d8s_A Cellular modulator of i 98.9 5E-10 1.7E-14 91.7 4.3 51 287-337 13-72 (80)
38 1g25_A CDK-activating kinase a 98.9 6.6E-10 2.2E-14 87.1 4.4 48 289-336 3-56 (65)
39 1jm7_A BRCA1, breast cancer ty 98.9 7.7E-10 2.6E-14 96.2 4.6 47 289-335 21-70 (112)
40 3l11_A E3 ubiquitin-protein li 98.9 1.7E-10 5.8E-15 101.1 0.3 47 288-334 14-61 (115)
41 2ct0_A Non-SMC element 1 homol 98.9 1.5E-09 5.2E-14 87.2 5.8 49 287-335 13-64 (74)
42 2kre_A Ubiquitin conjugation f 98.9 7.9E-10 2.7E-14 94.5 4.2 48 288-335 28-75 (100)
43 2kr4_A Ubiquitin conjugation f 98.9 8.3E-10 2.8E-14 91.6 3.5 48 288-335 13-60 (85)
44 1z6u_A NP95-like ring finger p 98.9 8.7E-10 3E-14 101.4 4.0 49 288-336 77-126 (150)
45 1bor_A Transcription factor PM 98.9 5.1E-10 1.7E-14 85.2 1.8 49 287-338 4-52 (56)
46 1wgm_A Ubiquitin conjugation f 98.8 1.4E-09 4.7E-14 92.7 4.2 48 288-335 21-69 (98)
47 2ckl_B Ubiquitin ligase protei 98.8 1E-09 3.6E-14 102.3 3.7 47 289-335 54-102 (165)
48 1rmd_A RAG1; V(D)J recombinati 98.8 5E-10 1.7E-14 98.3 1.3 48 288-335 22-70 (116)
49 2vje_B MDM4 protein; proto-onc 98.8 1.5E-09 5E-14 84.8 3.3 48 287-334 5-55 (63)
50 2vje_A E3 ubiquitin-protein li 98.8 1.6E-09 5.4E-14 84.9 3.5 47 288-334 7-56 (64)
51 3hct_A TNF receptor-associated 98.8 1.2E-09 4.1E-14 96.2 2.8 49 287-335 16-65 (118)
52 4ap4_A E3 ubiquitin ligase RNF 98.8 1.1E-09 3.9E-14 97.6 2.6 50 286-335 69-125 (133)
53 2y1n_A E3 ubiquitin-protein li 98.8 2E-09 6.8E-14 112.6 4.5 49 288-336 331-380 (389)
54 2c2l_A CHIP, carboxy terminus 98.7 1.2E-08 4.1E-13 102.6 7.0 49 287-335 206-255 (281)
55 3knv_A TNF receptor-associated 98.7 2.5E-09 8.5E-14 97.3 1.4 49 287-335 29-78 (141)
56 1e4u_A Transcriptional repress 98.7 1.5E-08 5.1E-13 82.5 5.9 50 287-336 9-63 (78)
57 1jm7_B BARD1, BRCA1-associated 98.7 4.1E-09 1.4E-13 92.6 2.4 45 288-334 21-66 (117)
58 4ic3_A E3 ubiquitin-protein li 98.6 6.2E-09 2.1E-13 83.8 1.8 43 288-334 23-66 (74)
59 2yu4_A E3 SUMO-protein ligase 98.6 1.5E-08 5.1E-13 85.6 2.2 45 288-332 6-59 (94)
60 2ea5_A Cell growth regulator w 98.5 5.2E-08 1.8E-12 77.1 3.7 48 284-335 10-58 (68)
61 2f42_A STIP1 homology and U-bo 98.5 3.6E-08 1.2E-12 92.8 3.0 48 288-335 105-153 (179)
62 3k1l_B Fancl; UBC, ring, RWD, 98.5 4.3E-08 1.5E-12 99.7 3.1 48 287-334 306-372 (381)
63 3hcs_A TNF receptor-associated 98.5 4E-08 1.4E-12 92.0 2.4 48 288-335 17-65 (170)
64 2ecg_A Baculoviral IAP repeat- 98.5 5.9E-08 2E-12 78.2 2.8 43 289-335 25-68 (75)
65 2bay_A PRE-mRNA splicing facto 98.4 8.8E-08 3E-12 74.1 2.1 48 289-336 3-51 (61)
66 2yho_A E3 ubiquitin-protein li 98.4 9.3E-08 3.2E-12 78.0 1.7 43 289-335 18-61 (79)
67 1vyx_A ORF K3, K3RING; zinc-bi 98.3 5.1E-07 1.7E-11 69.5 3.5 48 287-334 4-58 (60)
68 3htk_C E3 SUMO-protein ligase 98.2 1.2E-06 3.9E-11 86.6 5.7 48 288-335 180-232 (267)
69 3t6p_A Baculoviral IAP repeat- 98.2 3.2E-07 1.1E-11 95.2 1.3 43 288-334 294-337 (345)
70 1wim_A KIAA0161 protein; ring 98.0 1.8E-06 6.3E-11 72.5 3.2 45 288-332 4-61 (94)
71 3vk6_A E3 ubiquitin-protein li 97.7 2.3E-05 8E-10 65.5 3.6 46 291-336 3-50 (101)
72 3nw0_A Non-structural maintena 97.6 4.9E-05 1.7E-09 74.8 5.3 48 289-336 180-230 (238)
73 2ko5_A Ring finger protein Z; 93.7 0.11 3.8E-06 42.6 5.7 47 288-336 27-74 (99)
74 3m62_A Ubiquitin conjugation f 92.8 0.15 5.2E-06 58.8 7.2 48 288-335 890-938 (968)
75 2jun_A Midline-1; B-BOX, TRIM, 90.5 0.1 3.5E-06 43.5 2.0 31 289-319 3-36 (101)
76 2lri_C Autoimmune regulator; Z 88.7 0.31 1.1E-05 37.7 3.3 44 287-333 10-60 (66)
77 1wil_A KIAA1045 protein; ring 86.2 0.57 2E-05 37.7 3.5 32 287-319 13-47 (89)
78 2cs3_A Protein C14ORF4, MY039 74.2 2.2 7.4E-05 33.9 3.0 36 287-322 13-52 (93)
79 3u5n_A E3 ubiquitin-protein li 70.7 0.79 2.7E-05 43.5 -0.3 44 286-332 4-54 (207)
80 1mm2_A MI2-beta; PHD, zinc fin 70.2 1.1 3.8E-05 33.9 0.5 44 286-332 6-56 (61)
81 2l5u_A Chromodomain-helicase-D 69.9 2.1 7.3E-05 32.2 2.0 42 287-331 9-57 (61)
82 1weo_A Cellulose synthase, cat 64.9 22 0.00077 28.8 7.1 48 288-335 15-70 (93)
83 1fp0_A KAP-1 corepressor; PHD 64.6 3.1 0.00011 33.9 2.2 44 286-332 22-72 (88)
84 2k16_A Transcription initiatio 64.4 1.2 4.1E-05 35.0 -0.4 47 288-334 17-70 (75)
85 3o36_A Transcription intermedi 64.0 3.1 0.00011 38.5 2.3 43 288-333 3-52 (184)
86 1f62_A Transcription factor WS 62.9 2.9 9.9E-05 30.1 1.5 41 291-331 2-49 (51)
87 3lqh_A Histone-lysine N-methyl 61.9 2.7 9.4E-05 39.1 1.5 44 289-332 2-63 (183)
88 2puy_A PHD finger protein 21A; 54.8 0.87 3E-05 34.2 -2.7 45 287-334 3-54 (60)
89 2ro1_A Transcription intermedi 51.8 3.4 0.00012 38.6 0.3 41 289-332 2-49 (189)
90 2ysm_A Myeloid/lymphoid or mix 51.2 3.4 0.00012 34.9 0.2 44 287-330 5-55 (111)
91 1we9_A PHD finger family prote 50.3 1.8 6.2E-05 32.8 -1.5 45 287-331 4-57 (64)
92 2l43_A N-teminal domain from h 47.7 4.8 0.00016 32.7 0.5 47 287-333 23-76 (88)
93 2yql_A PHD finger protein 21A; 46.0 1.4 4.7E-05 32.6 -2.7 41 287-330 7-54 (56)
94 3i2d_A E3 SUMO-protein ligase 45.6 12 0.00042 38.4 3.3 47 289-335 249-300 (371)
95 2lbm_A Transcriptional regulat 44.5 14 0.00049 32.7 3.2 43 286-331 60-116 (142)
96 4fo9_A E3 SUMO-protein ligase 43.2 14 0.00048 37.9 3.3 47 289-335 215-266 (360)
97 2lv9_A Histone-lysine N-methyl 42.4 7.2 0.00025 32.3 0.9 41 290-331 29-75 (98)
98 1wen_A Inhibitor of growth fam 40.7 13 0.00046 28.7 2.1 41 288-332 15-65 (71)
99 2e6s_A E3 ubiquitin-protein li 40.5 5.2 0.00018 31.7 -0.3 43 289-331 26-76 (77)
100 2e6r_A Jumonji/ARID domain-con 40.2 3.3 0.00011 34.0 -1.6 46 287-332 14-66 (92)
101 3v43_A Histone acetyltransfera 39.8 6.4 0.00022 33.3 0.2 41 291-331 63-111 (112)
102 1xwh_A Autoimmune regulator; P 39.5 3.9 0.00013 31.2 -1.2 42 287-331 6-54 (66)
103 1wem_A Death associated transc 38.6 8.3 0.00028 30.1 0.6 45 287-332 14-70 (76)
104 2dar_A PDZ and LIM domain prot 36.2 20 0.00069 28.5 2.6 40 288-335 24-63 (90)
105 3shb_A E3 ubiquitin-protein li 35.5 7.2 0.00025 30.9 -0.2 41 291-331 28-76 (77)
106 2xze_Q Charged multivesicular 33.7 34 0.0012 23.5 2.9 21 492-512 20-40 (40)
107 3ql9_A Transcriptional regulat 33.3 29 0.001 30.2 3.3 43 286-331 54-110 (129)
108 2gmg_A Hypothetical protein PF 33.2 11 0.00039 31.6 0.6 26 303-333 69-94 (105)
109 3zyq_A Hepatocyte growth facto 32.6 28 0.00097 33.1 3.4 32 288-319 163-198 (226)
110 3v43_A Histone acetyltransfera 32.2 42 0.0014 28.1 4.1 43 288-330 4-62 (112)
111 1wep_A PHF8; structural genomi 31.7 18 0.00061 28.4 1.5 45 287-332 10-63 (79)
112 1y02_A CARP2, FYVE-ring finger 31.1 3.7 0.00013 35.5 -2.8 46 288-333 18-67 (120)
113 2wg5_A General control protein 30.9 43 0.0015 28.1 3.9 28 487-514 10-37 (109)
114 1x62_A C-terminal LIM domain p 30.4 27 0.00092 27.0 2.4 39 288-334 14-52 (79)
115 1x64_A Alpha-actinin-2 associa 30.1 37 0.0013 26.8 3.2 40 288-335 24-63 (89)
116 2d8z_A Four and A half LIM dom 30.0 36 0.0012 25.3 3.1 38 289-334 5-42 (70)
117 3ask_A E3 ubiquitin-protein li 29.9 9.7 0.00033 36.5 -0.4 42 290-331 175-224 (226)
118 4gne_A Histone-lysine N-methyl 29.5 29 0.00099 29.2 2.5 43 287-334 13-64 (107)
119 2d8x_A Protein pinch; LIM doma 29.2 35 0.0012 25.5 2.8 39 289-335 5-43 (70)
120 1wev_A Riken cDNA 1110020M19; 28.5 9.3 0.00032 30.9 -0.7 47 288-334 15-74 (88)
121 2fiy_A Protein FDHE homolog; F 28.5 13 0.00045 37.4 0.3 46 287-332 180-231 (309)
122 1z2q_A LM5-1; membrane protein 28.3 20 0.00068 28.6 1.3 32 288-319 20-55 (84)
123 1joc_A EEA1, early endosomal a 28.3 18 0.00063 31.2 1.1 30 289-318 69-102 (125)
124 3viq_B Mating-type switching p 27.8 1.2E+02 0.0042 24.2 5.8 42 485-526 2-43 (85)
125 2cu8_A Cysteine-rich protein 2 27.8 33 0.0011 26.2 2.5 40 288-335 8-48 (76)
126 1wd2_A Ariadne-1 protein homol 27.8 11 0.00037 28.3 -0.4 34 289-322 6-47 (60)
127 1nyp_A Pinch protein; LIM doma 27.7 30 0.001 25.5 2.2 38 289-334 5-42 (66)
128 2hep_A UPF0291 protein YNZC; S 27.4 16 0.00054 29.4 0.5 52 487-538 29-80 (85)
129 2yw8_A RUN and FYVE domain-con 27.1 22 0.00075 28.2 1.3 31 288-318 18-52 (82)
130 2ri7_A Nucleosome-remodeling f 26.8 8.3 0.00029 35.1 -1.4 44 288-332 7-59 (174)
131 3asl_A E3 ubiquitin-protein li 26.7 18 0.0006 27.9 0.6 41 291-331 20-68 (70)
132 2cur_A Skeletal muscle LIM-pro 26.5 39 0.0013 25.1 2.7 38 289-334 5-42 (69)
133 2cor_A Pinch protein; LIM doma 26.4 40 0.0014 26.0 2.8 40 288-335 14-53 (79)
134 3mpx_A FYVE, rhogef and PH dom 26.3 14 0.00048 38.5 0.0 46 288-333 374-430 (434)
135 1weu_A Inhibitor of growth fam 26.1 35 0.0012 27.8 2.4 41 289-333 36-86 (91)
136 1jcd_A Major outer membrane li 25.9 1.3E+02 0.0043 21.9 5.0 36 487-530 7-42 (52)
137 1vfy_A Phosphatidylinositol-3- 25.9 26 0.00089 27.1 1.5 29 289-317 11-43 (73)
138 3t7l_A Zinc finger FYVE domain 25.5 22 0.00077 28.7 1.1 33 288-320 19-55 (90)
139 1x4u_A Zinc finger, FYVE domai 24.9 22 0.00076 28.3 1.0 29 288-316 13-45 (84)
140 1wyh_A SLIM 2, skeletal muscle 24.8 47 0.0016 24.8 2.9 39 289-335 5-45 (72)
141 1x68_A FHL5 protein; four-and- 24.6 47 0.0016 25.3 2.8 38 289-334 5-46 (76)
142 2d8v_A Zinc finger FYVE domain 24.4 28 0.00095 26.6 1.3 32 287-319 6-38 (67)
143 2yt5_A Metal-response element- 23.7 27 0.00093 26.2 1.2 46 287-332 4-61 (66)
144 1v6g_A Actin binding LIM prote 23.4 46 0.0016 25.6 2.6 39 289-335 15-53 (81)
145 2vpb_A Hpygo1, pygopus homolog 23.2 34 0.0012 25.9 1.7 31 287-317 6-41 (65)
146 1x4l_A Skeletal muscle LIM-pro 22.8 60 0.002 24.3 3.1 38 289-334 5-46 (72)
147 1zbd_B Rabphilin-3A; G protein 22.7 48 0.0016 29.0 2.8 30 287-316 53-87 (134)
148 1wfk_A Zinc finger, FYVE domai 21.7 29 0.00099 28.0 1.1 31 288-318 8-42 (88)
149 1dvp_A HRS, hepatocyte growth 21.3 25 0.00086 33.2 0.7 31 288-318 160-194 (220)
150 2o35_A Hypothetical protein DU 20.7 36 0.0012 28.1 1.4 12 311-322 43-54 (105)
151 3mjh_B Early endosome antigen 20.7 9.1 0.00031 25.4 -1.8 15 289-303 5-19 (34)
152 3fyb_A Protein of unknown func 20.6 37 0.0012 28.0 1.4 12 311-322 42-53 (104)
153 1x6a_A LIMK-2, LIM domain kina 20.4 53 0.0018 25.2 2.4 38 289-334 15-52 (81)
154 2ysm_A Myeloid/lymphoid or mix 20.4 16 0.00054 30.6 -0.8 42 291-332 56-104 (111)
155 4h22_A Leucine-rich repeat fli 20.3 45 0.0015 27.7 1.9 58 485-544 17-74 (103)
156 2dlo_A Thyroid receptor-intera 20.3 59 0.002 25.0 2.6 39 288-334 14-52 (81)
157 1wew_A DNA-binding family prot 20.3 28 0.00097 27.2 0.7 45 288-333 15-73 (78)
158 1wig_A KIAA1808 protein; LIM d 20.2 50 0.0017 25.1 2.1 38 289-334 5-42 (73)
159 1iml_A CRIP, cysteine rich int 20.1 52 0.0018 25.0 2.2 24 292-315 3-27 (76)
No 1
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=1.6e-12 Score=105.23 Aligned_cols=50 Identities=34% Similarity=0.907 Sum_probs=44.5
Q ss_pred ccCCCcccccccccccc---eEecccccccHHHHHHHHhcCCCCCCCCccccC
Q 008218 286 DASDSTCIICREEMTTA---KKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 286 ~~~~~~C~IC~~~~~~~---~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
...+..|+||++.+..+ ..+||||.||..||++|++.+.+||+||+++.+
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 34567899999999887 578999999999999999999999999998864
No 2
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.27 E-value=3.2e-12 Score=104.12 Aligned_cols=56 Identities=32% Similarity=0.839 Sum_probs=46.8
Q ss_pred ccCCCcccccccccccce---EecccccccHHHHHHHHhcCCCCCCCCccccCCCCCCC
Q 008218 286 DASDSTCIICREEMTTAK---KLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGAS 341 (573)
Q Consensus 286 ~~~~~~C~IC~~~~~~~~---~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~~~~~~ 341 (573)
...+..|+||++.+..+. .++|||.||..||.+|++.+.+||+||.++...+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 355789999999998663 56999999999999999999999999999876544433
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.26 E-value=3.5e-12 Score=101.32 Aligned_cols=50 Identities=32% Similarity=0.832 Sum_probs=43.4
Q ss_pred cCCCccccccccccc---ceEecccccccHHHHHHHHhcCCCCCCCCccccCC
Q 008218 287 ASDSTCIICREEMTT---AKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~---~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~ 336 (573)
..+..|+||++.+.. +..++|||.||..|+.+|+..+.+||+||.++...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 456789999999864 35789999999999999999999999999988653
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=4.4e-12 Score=102.18 Aligned_cols=51 Identities=31% Similarity=0.760 Sum_probs=44.1
Q ss_pred cCCCcccccccccccceE---ecccccccHHHHHHHHhcCCCCCCCCccccCCC
Q 008218 287 ASDSTCIICREEMTTAKK---LICGHLFHVHCLRSWLERQHTCPTCRALVVPPE 337 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~---l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~~ 337 (573)
..+..|+||++.+..+.. ++|+|.||..||.+|++.+.+||+||.++....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 346789999999987654 499999999999999998899999999986543
No 5
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.25 E-value=2.5e-12 Score=108.26 Aligned_cols=49 Identities=39% Similarity=0.941 Sum_probs=43.5
Q ss_pred cCCCccccccccccc---ceEecccccccHHHHHHHHhcCCCCCCCCccccC
Q 008218 287 ASDSTCIICREEMTT---AKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~---~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
..+..|+||++.+.. ...+||||.||..||+.|+..+.+||+||..+.+
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 356789999999987 5578999999999999999999999999998854
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.24 E-value=2.9e-12 Score=97.01 Aligned_cols=47 Identities=43% Similarity=0.963 Sum_probs=41.8
Q ss_pred CCCccccccccccc---ceEec-ccccccHHHHHHHHhcCCCCCCCCcccc
Q 008218 288 SDSTCIICREEMTT---AKKLI-CGHLFHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 288 ~~~~C~IC~~~~~~---~~~l~-C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
.+..|+||++.+.+ ...++ |||.||..|+++|++.+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 46789999999987 55777 9999999999999999999999998764
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=5.2e-12 Score=103.92 Aligned_cols=48 Identities=31% Similarity=0.753 Sum_probs=40.9
Q ss_pred cCCCccccccccccc--------------ceEec-ccccccHHHHHHHHhcCCCCCCCCcccc
Q 008218 287 ASDSTCIICREEMTT--------------AKKLI-CGHLFHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~--------------~~~l~-C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
..++.|+||++.+.+ ...++ |||.||..||++|++.+.+||+||+++.
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 356789999999865 33554 9999999999999999999999999875
No 8
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=5.1e-12 Score=100.05 Aligned_cols=48 Identities=35% Similarity=0.804 Sum_probs=43.6
Q ss_pred cCCCcccccccccccc-------eEecccccccHHHHHHHHhcCCCCCCCCcccc
Q 008218 287 ASDSTCIICREEMTTA-------KKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~-------~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
..+..|+||++.+.++ ..++|||.||..|+.+|+..+.+||+||.++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 4577899999999887 67899999999999999999999999999875
No 9
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=5.3e-12 Score=101.02 Aligned_cols=49 Identities=22% Similarity=0.485 Sum_probs=45.2
Q ss_pred cCCCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCccccC
Q 008218 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
..+..|+||++.+.++..++|||.||..|+..|+..+.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4567899999999999999999999999999999998999999998853
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.21 E-value=4.6e-12 Score=101.04 Aligned_cols=50 Identities=34% Similarity=0.761 Sum_probs=44.7
Q ss_pred cCCCcccccccccccc-------eEecccccccHHHHHHHHhcCCCCCCCCccccCC
Q 008218 287 ASDSTCIICREEMTTA-------KKLICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~-------~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~ 336 (573)
..+..|+||++.+.++ ..++|||.||..|+.+|++.+.+||+||.++...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 3567899999999887 6889999999999999999999999999988643
No 11
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.1e-11 Score=99.53 Aligned_cols=51 Identities=24% Similarity=0.556 Sum_probs=45.6
Q ss_pred cCCCcccccccccccceEe-cccccccHHHHHHHHhcCCCCCCCCccccCCC
Q 008218 287 ASDSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLERQHTCPTCRALVVPPE 337 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~~ 337 (573)
..+..|+||++.+.++..+ +|||.||..||..|++.+.+||+||.++...+
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred CCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 3467899999999999987 99999999999999998899999999886543
No 12
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.20 E-value=5.8e-12 Score=95.28 Aligned_cols=48 Identities=38% Similarity=0.773 Sum_probs=42.2
Q ss_pred cCCCccccccccccc----ceEecccccccHHHHHHHHhcCCCCCCCCcccc
Q 008218 287 ASDSTCIICREEMTT----AKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~----~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
..+..|+||++.+.+ +..++|||.||..|+.+|++.+.+||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 346789999999966 567899999999999999998899999998774
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.18 E-value=9.3e-12 Score=97.00 Aligned_cols=49 Identities=35% Similarity=0.753 Sum_probs=43.6
Q ss_pred CCCcccccccccccc-------eEecccccccHHHHHHHHhcCCCCCCCCccccCC
Q 008218 288 SDSTCIICREEMTTA-------KKLICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~-------~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~ 336 (573)
++..|+||++.+.++ ..++|||.||..|+.+|++.+.+||+||.++...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 356899999999876 6789999999999999999999999999988643
No 14
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.17 E-value=2.6e-11 Score=106.06 Aligned_cols=49 Identities=31% Similarity=0.772 Sum_probs=40.9
Q ss_pred CCCcccccccccccce------------------EecccccccHHHHHHHH-----hcCCCCCCCCccccCC
Q 008218 288 SDSTCIICREEMTTAK------------------KLICGHLFHVHCLRSWL-----ERQHTCPTCRALVVPP 336 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~------------------~l~C~H~Fh~~Cl~~wl-----~~~~~CP~Cr~~i~~~ 336 (573)
.++.|+||++.+..+. .++|+|.||..||..|+ ..+.+||+||..+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3568999999997653 67999999999999999 4567899999987543
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.15 E-value=1.7e-11 Score=96.97 Aligned_cols=49 Identities=31% Similarity=0.720 Sum_probs=43.7
Q ss_pred cCCCcccccccccccc-eEecccccccHHHHHHHHhcCCCCCCCCccccC
Q 008218 287 ASDSTCIICREEMTTA-KKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~-~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
..+..|+||++.+.++ ..++|||.||..|+.+|++.+.+||+||.++..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 3467899999999986 678999999999999999989999999998853
No 16
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=3.1e-11 Score=96.79 Aligned_cols=50 Identities=26% Similarity=0.611 Sum_probs=44.3
Q ss_pred cCCCcccccccccccceEecccccccHHHHHHHHh---cCCCCCCCCccccCC
Q 008218 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLE---RQHTCPTCRALVVPP 336 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~---~~~~CP~Cr~~i~~~ 336 (573)
..+..|+||++.+.++..++|||.||..|+..|++ ....||+||.++...
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 45679999999999999999999999999999996 355899999988643
No 17
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.14 E-value=2.2e-11 Score=105.25 Aligned_cols=48 Identities=29% Similarity=0.713 Sum_probs=41.9
Q ss_pred cCCCcccccccccccc------------------eEecccccccHHHHHHHHhcCCCCCCCCcccc
Q 008218 287 ASDSTCIICREEMTTA------------------KKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~------------------~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
..++.|+||++.+..+ ..++|+|.||..||++|+..+.+||+||++..
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 3578999999999865 24799999999999999999999999999853
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=1.4e-11 Score=98.07 Aligned_cols=50 Identities=28% Similarity=0.772 Sum_probs=44.9
Q ss_pred cCCCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCccccCCC
Q 008218 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPE 337 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~~ 337 (573)
..+..|+||++.+.+ ..++|||.||..|+.+|+..+.+||+||.++...+
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 346789999999999 88999999999999999999999999999887543
No 19
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3.1e-11 Score=95.07 Aligned_cols=50 Identities=24% Similarity=0.595 Sum_probs=44.1
Q ss_pred cCCCcccccccccccceEecccccccHHHHHHHHh-cCCCCCCCCccccCC
Q 008218 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLE-RQHTCPTCRALVVPP 336 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~-~~~~CP~Cr~~i~~~ 336 (573)
..+..|+||++.+.++..++|||.||..|+.+|+. ...+||+||.++...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 34678999999999999999999999999999994 567899999988643
No 20
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=2.7e-11 Score=99.41 Aligned_cols=48 Identities=21% Similarity=0.458 Sum_probs=44.6
Q ss_pred cCCCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCcccc
Q 008218 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
.....|+||++.+.++..++|||.||..|+..|++...+||+||.++.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 456789999999999999999999999999999998899999999885
No 21
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.11 E-value=3.8e-11 Score=108.92 Aligned_cols=48 Identities=35% Similarity=0.857 Sum_probs=44.2
Q ss_pred CCCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCccccC
Q 008218 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
.+..|+||++.+.+|+.+||||.||..||..|+..+.+||+||.++..
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 356799999999999999999999999999999999999999998853
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.11 E-value=4.6e-11 Score=96.37 Aligned_cols=50 Identities=38% Similarity=0.822 Sum_probs=43.6
Q ss_pred cCCCcccccccccccceEec-ccccccHHHHHHHHhcC--CCCCCCCccccCC
Q 008218 287 ASDSTCIICREEMTTAKKLI-CGHLFHVHCLRSWLERQ--HTCPTCRALVVPP 336 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~-C~H~Fh~~Cl~~wl~~~--~~CP~Cr~~i~~~ 336 (573)
..+..|+||++.+.++..++ |||.||..||..|+..+ .+||+||.++...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 34678999999999999999 99999999999999765 6899999975443
No 23
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=7e-11 Score=98.13 Aligned_cols=50 Identities=32% Similarity=0.621 Sum_probs=44.1
Q ss_pred cCCCccccccccccc----ceEecccccccHHHHHHHHhcC---CCCCCCCccccCC
Q 008218 287 ASDSTCIICREEMTT----AKKLICGHLFHVHCLRSWLERQ---HTCPTCRALVVPP 336 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~----~~~l~C~H~Fh~~Cl~~wl~~~---~~CP~Cr~~i~~~ 336 (573)
..+..|+||++.+.+ +..++|||.||..|+..|++.+ .+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 456789999999998 8889999999999999999875 7899999987543
No 24
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.07 E-value=6.9e-11 Score=96.13 Aligned_cols=50 Identities=20% Similarity=0.454 Sum_probs=44.9
Q ss_pred cCCCcccccccccccceEecccccccHHHHHHHHhc-CCCCCCCCccccCC
Q 008218 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLER-QHTCPTCRALVVPP 336 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~-~~~CP~Cr~~i~~~ 336 (573)
..+..|+||++.+.+|..++|||.||..||..|+.. +.+||+||.++...
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred cccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 346799999999999999999999999999999987 77899999988543
No 25
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.5e-10 Score=90.20 Aligned_cols=43 Identities=28% Similarity=0.702 Sum_probs=39.1
Q ss_pred cCCCcccccccccccceEecccccccHHHHHHHHh---cCCCCCCC
Q 008218 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLE---RQHTCPTC 329 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~---~~~~CP~C 329 (573)
..+..|+||++.+.++..++|||.||..||.+|++ ...+||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 45779999999999999999999999999999997 45689998
No 26
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.04 E-value=1.6e-10 Score=95.02 Aligned_cols=50 Identities=28% Similarity=0.530 Sum_probs=44.7
Q ss_pred cCCCcccccccccccceEecccccccHHHHHHHHhc------CCCCCCCCccccCC
Q 008218 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLER------QHTCPTCRALVVPP 336 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~------~~~CP~Cr~~i~~~ 336 (573)
..+..|+||++.+.++..++|||.||..|+..|+.. ...||.||.++...
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 456799999999999999999999999999999977 66899999988643
No 27
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.03 E-value=5.4e-11 Score=96.82 Aligned_cols=49 Identities=29% Similarity=0.564 Sum_probs=44.1
Q ss_pred cCCCcccccccccccceEecccccccHHHHHHHHhc-------CCCCCCCCccccC
Q 008218 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLER-------QHTCPTCRALVVP 335 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~-------~~~CP~Cr~~i~~ 335 (573)
..+..|+||++.+.++..++|||.||..|+..|+.. ...||+||.++..
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 356789999999999999999999999999999976 5689999998864
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=2e-10 Score=94.47 Aligned_cols=50 Identities=36% Similarity=0.739 Sum_probs=44.9
Q ss_pred cCCCcccccccccccceEecccccccHHHHHHHHhc------CCCCCCCCccccCC
Q 008218 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLER------QHTCPTCRALVVPP 336 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~------~~~CP~Cr~~i~~~ 336 (573)
..+..|+||++.+.++..++|||.||..|+..|+.. ...||.||..+...
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred cCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 456799999999999999999999999999999976 77899999988653
No 29
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.02 E-value=1.6e-10 Score=96.96 Aligned_cols=48 Identities=38% Similarity=0.800 Sum_probs=42.7
Q ss_pred cCCCcccccccccccceEec-ccccccHHHHHHHHhcC--CCCCCCCcccc
Q 008218 287 ASDSTCIICREEMTTAKKLI-CGHLFHVHCLRSWLERQ--HTCPTCRALVV 334 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~-C~H~Fh~~Cl~~wl~~~--~~CP~Cr~~i~ 334 (573)
..+..|+||++.+.+|..++ |||.||..||..|+..+ ..||+||.++.
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 45779999999999999999 99999999999999643 58999999863
No 30
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.01 E-value=7.5e-11 Score=100.92 Aligned_cols=48 Identities=35% Similarity=0.785 Sum_probs=43.5
Q ss_pred CCCcccccccccccceE-ecccccccHHHHHHHHhcC-CCCCCCCccccC
Q 008218 288 SDSTCIICREEMTTAKK-LICGHLFHVHCLRSWLERQ-HTCPTCRALVVP 335 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~-l~C~H~Fh~~Cl~~wl~~~-~~CP~Cr~~i~~ 335 (573)
.+..|+||++.+.++.. ++|||.||..||..|+..+ .+||+||.++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 35689999999999999 9999999999999999877 689999998853
No 31
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.00 E-value=4.2e-11 Score=105.11 Aligned_cols=48 Identities=29% Similarity=0.696 Sum_probs=1.6
Q ss_pred cCCCcccccccccccce------------------EecccccccHHHHHHHHhcCCCCCCCCcccc
Q 008218 287 ASDSTCIICREEMTTAK------------------KLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~------------------~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
..++.|+||++.+.++. .++|+|.||..||++|+..+.+||+||++..
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CCC---------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 35689999999997632 2489999999999999999999999999864
No 32
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=2.5e-10 Score=87.13 Aligned_cols=43 Identities=33% Similarity=0.914 Sum_probs=38.4
Q ss_pred cCCCcccccccccccceEecccccccHHHHHHHHh---cCCCCCCC
Q 008218 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLE---RQHTCPTC 329 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~---~~~~CP~C 329 (573)
..+..|+||++.+.++..++|||.||..||.+|+. ...+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45678999999999999999999999999999954 56789998
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.97 E-value=1.8e-10 Score=98.17 Aligned_cols=48 Identities=31% Similarity=0.628 Sum_probs=44.0
Q ss_pred CCCcccccccccccceEe-cccccccHHHHHHHHhcCCCCCCCCccccC
Q 008218 288 SDSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
.+..|+||++.+.++..+ +|||.||..|+..|+..+.+||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 457899999999999988 899999999999999988999999998754
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.97 E-value=2.3e-10 Score=99.15 Aligned_cols=48 Identities=27% Similarity=0.642 Sum_probs=44.4
Q ss_pred CCCcccccccccccceEe-cccccccHHHHHHHHhcCCCCCCCCccccC
Q 008218 288 SDSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
.+..|+||++.+.++..+ +|||.||..||..|+..+.+||.||..+..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 467899999999999998 999999999999999988999999998854
No 35
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.97 E-value=2.9e-10 Score=101.01 Aligned_cols=48 Identities=27% Similarity=0.548 Sum_probs=43.2
Q ss_pred CCCcccccccccccceEecccccccHHHHHHHHhcCC-CCCCCCccccC
Q 008218 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQH-TCPTCRALVVP 335 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~-~CP~Cr~~i~~ 335 (573)
.+..|+||++.+.+|..++|||.||..||..|+..+. .||+||.++..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4578999999999999999999999999999997544 89999998864
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.94 E-value=3.6e-10 Score=100.90 Aligned_cols=50 Identities=34% Similarity=0.761 Sum_probs=45.1
Q ss_pred cCCCcccccccccccc-------eEecccccccHHHHHHHHhcCCCCCCCCccccCC
Q 008218 287 ASDSTCIICREEMTTA-------KKLICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~-------~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~ 336 (573)
.++..|+||++.+.++ ..++|||.||..||++|++.+.+||+||+.+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 4567899999999988 7899999999999999999999999999988643
No 37
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=5e-10 Score=91.75 Aligned_cols=51 Identities=25% Similarity=0.622 Sum_probs=41.6
Q ss_pred cCCCccccccccccc--ceEeccc-----ccccHHHHHHHHhcC--CCCCCCCccccCCC
Q 008218 287 ASDSTCIICREEMTT--AKKLICG-----HLFHVHCLRSWLERQ--HTCPTCRALVVPPE 337 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~--~~~l~C~-----H~Fh~~Cl~~wl~~~--~~CP~Cr~~i~~~~ 337 (573)
..+..|.||++++++ +..+||+ |.||..||++|+..+ .+||+||.++....
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 456789999998854 4467996 999999999999765 48999999886543
No 38
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.92 E-value=6.6e-10 Score=87.06 Aligned_cols=48 Identities=23% Similarity=0.606 Sum_probs=40.4
Q ss_pred CCccccccc-ccccce----EecccccccHHHHHHHHhc-CCCCCCCCccccCC
Q 008218 289 DSTCIICRE-EMTTAK----KLICGHLFHVHCLRSWLER-QHTCPTCRALVVPP 336 (573)
Q Consensus 289 ~~~C~IC~~-~~~~~~----~l~C~H~Fh~~Cl~~wl~~-~~~CP~Cr~~i~~~ 336 (573)
+..|+||++ .+.++. .++|||.||..|+.+|+.+ ...||+||.++...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 568999999 888874 5799999999999999754 46799999988643
No 39
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.90 E-value=7.7e-10 Score=96.15 Aligned_cols=47 Identities=26% Similarity=0.634 Sum_probs=42.2
Q ss_pred CCcccccccccccceEecccccccHHHHHHHHhcCC---CCCCCCccccC
Q 008218 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQH---TCPTCRALVVP 335 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~---~CP~Cr~~i~~ 335 (573)
...|+||++.+.++..++|||.||..|+..|+..+. +||+||.++..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 458999999999999999999999999999998654 89999998754
No 40
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.90 E-value=1.7e-10 Score=101.09 Aligned_cols=47 Identities=34% Similarity=0.683 Sum_probs=42.8
Q ss_pred CCCcccccccccccceEecccccccHHHHHHHHhc-CCCCCCCCcccc
Q 008218 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLER-QHTCPTCRALVV 334 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~-~~~CP~Cr~~i~ 334 (573)
.+..|+||++.+.++..++|||.||..||..|+.. ...||+||..+.
T Consensus 14 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 14 SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 45789999999999999999999999999999976 668999999875
No 41
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.90 E-value=1.5e-09 Score=87.21 Aligned_cols=49 Identities=20% Similarity=0.602 Sum_probs=42.3
Q ss_pred cCCCcccccccccccceEe-cccccccHHHHHHHHhcC--CCCCCCCccccC
Q 008218 287 ASDSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLERQ--HTCPTCRALVVP 335 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~~--~~CP~Cr~~i~~ 335 (573)
+..+.|+||++.+..+++- .|+|.||..||++|++.+ .+||+||.+...
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 4567899999999877655 799999999999999877 789999988753
No 42
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.89 E-value=7.9e-10 Score=94.55 Aligned_cols=48 Identities=17% Similarity=0.128 Sum_probs=44.8
Q ss_pred CCCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCccccC
Q 008218 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
....|+||++.|.+|+.++|||.||..||..|+..+.+||.||.++..
T Consensus 28 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred HhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 467999999999999999999999999999999988899999998864
No 43
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.87 E-value=8.3e-10 Score=91.56 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=44.6
Q ss_pred CCCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCccccC
Q 008218 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
....|+||++.|++|+.++|||.||..||..|+..+.+||.||.++..
T Consensus 13 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred hheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 468999999999999999999999999999999988999999988753
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.87 E-value=8.7e-10 Score=101.38 Aligned_cols=49 Identities=24% Similarity=0.495 Sum_probs=44.0
Q ss_pred CCCcccccccccccceEecccccccHHHHHHHHhcCC-CCCCCCccccCC
Q 008218 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQH-TCPTCRALVVPP 336 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~-~CP~Cr~~i~~~ 336 (573)
.+..|+||++.+.++..++|||.||..||..|+.... .||+||.++...
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3578999999999999999999999999999998754 899999998654
No 45
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.86 E-value=5.1e-10 Score=85.24 Aligned_cols=49 Identities=27% Similarity=0.437 Sum_probs=42.1
Q ss_pred cCCCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCccccCCCC
Q 008218 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPEN 338 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~~~ 338 (573)
..+..|+||++.+.+++.++|||.||..|+..| ...||+||+.+..+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~ 52 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGAD 52 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCSS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC---CCCCCcCCcEeecCCc
Confidence 346789999999999999999999999999874 5689999998865443
No 46
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.85 E-value=1.4e-09 Score=92.69 Aligned_cols=48 Identities=15% Similarity=0.006 Sum_probs=44.8
Q ss_pred CCCcccccccccccceEeccc-ccccHHHHHHHHhcCCCCCCCCccccC
Q 008218 288 SDSTCIICREEMTTAKKLICG-HLFHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~-H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
.+..|+||++.|++|+.++|| |.||..||..|+..+.+||+||.++..
T Consensus 21 ~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred HhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 467999999999999999999 999999999999888899999998864
No 47
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.85 E-value=1e-09 Score=102.33 Aligned_cols=47 Identities=30% Similarity=0.673 Sum_probs=42.6
Q ss_pred CCcccccccccccceEe-cccccccHHHHHHHHhc-CCCCCCCCccccC
Q 008218 289 DSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLER-QHTCPTCRALVVP 335 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~-~~~CP~Cr~~i~~ 335 (573)
+..|+||++.+.++..+ +|||.||..||..|+.. +..||+||.++..
T Consensus 54 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 45899999999999988 99999999999999987 7789999998853
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.84 E-value=5e-10 Score=98.26 Aligned_cols=48 Identities=29% Similarity=0.670 Sum_probs=43.7
Q ss_pred CCCcccccccccccceEecccccccHHHHHHHHhc-CCCCCCCCccccC
Q 008218 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLER-QHTCPTCRALVVP 335 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~-~~~CP~Cr~~i~~ 335 (573)
.+..|+||++.+.++..++|||.||..||..|+.. +.+||+||.++..
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 46789999999999999999999999999999986 6789999998854
No 49
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.83 E-value=1.5e-09 Score=84.79 Aligned_cols=48 Identities=23% Similarity=0.549 Sum_probs=43.0
Q ss_pred cCCCcccccccccccceEe--ccccc-ccHHHHHHHHhcCCCCCCCCcccc
Q 008218 287 ASDSTCIICREEMTTAKKL--ICGHL-FHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l--~C~H~-Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
+.+..|.||++...++..+ ||||. ||..|+..|.+.+..||+||+++.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 4467899999999888877 99998 999999999988889999999874
No 50
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.82 E-value=1.6e-09 Score=84.88 Aligned_cols=47 Identities=26% Similarity=0.615 Sum_probs=42.5
Q ss_pred CCCcccccccccccceEe--ccccc-ccHHHHHHHHhcCCCCCCCCcccc
Q 008218 288 SDSTCIICREEMTTAKKL--ICGHL-FHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l--~C~H~-Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
.+..|.||++...++..+ ||||. ||..|+..|.+.+..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 456899999999998877 99999 899999999998889999999874
No 51
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.81 E-value=1.2e-09 Score=96.17 Aligned_cols=49 Identities=24% Similarity=0.538 Sum_probs=43.8
Q ss_pred cCCCcccccccccccceEecccccccHHHHHHHHhcCC-CCCCCCccccC
Q 008218 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQH-TCPTCRALVVP 335 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~-~CP~Cr~~i~~ 335 (573)
..+..|+||++.+.++..++|||.||..||..|+..+. +||+||.++..
T Consensus 16 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 34578999999999999999999999999999997755 89999998854
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.81 E-value=1.1e-09 Score=97.57 Aligned_cols=50 Identities=34% Similarity=0.765 Sum_probs=44.8
Q ss_pred ccCCCcccccccccccc-------eEecccccccHHHHHHHHhcCCCCCCCCccccC
Q 008218 286 DASDSTCIICREEMTTA-------KKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 286 ~~~~~~C~IC~~~~~~~-------~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
...+..|+||++.+.++ ..++|||.||..|+++|++.+.+||+||.++..
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 45678899999999876 678999999999999999999999999998854
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.80 E-value=2e-09 Score=112.60 Aligned_cols=49 Identities=37% Similarity=0.746 Sum_probs=44.1
Q ss_pred CCCcccccccccccceEecccccccHHHHHHHHh-cCCCCCCCCccccCC
Q 008218 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLE-RQHTCPTCRALVVPP 336 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~-~~~~CP~Cr~~i~~~ 336 (573)
....|+||++.+.++..+||||.||..|+..|+. ...+||+||.++...
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3468999999999999999999999999999998 678999999988643
No 54
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.72 E-value=1.2e-08 Score=102.60 Aligned_cols=49 Identities=18% Similarity=0.130 Sum_probs=43.4
Q ss_pred cCCCcccccccccccceEecccccccHHHHHHHHhc-CCCCCCCCccccC
Q 008218 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLER-QHTCPTCRALVVP 335 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~-~~~CP~Cr~~i~~ 335 (573)
.....|+||++.|.+|+.+||||.||..||..|+.. +.+||+||.++..
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 357789999999999999999999999999999976 4459999998853
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.71 E-value=2.5e-09 Score=97.26 Aligned_cols=49 Identities=24% Similarity=0.529 Sum_probs=43.7
Q ss_pred cCCCcccccccccccceEecccccccHHHHHHHHhcCC-CCCCCCccccC
Q 008218 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQH-TCPTCRALVVP 335 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~-~CP~Cr~~i~~ 335 (573)
..+..|+||++.+.+|..++|||.||..||..|+.... +||+||.++..
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 45678999999999999999999999999999998664 89999998743
No 56
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.71 E-value=1.5e-08 Score=82.52 Aligned_cols=50 Identities=20% Similarity=0.454 Sum_probs=40.0
Q ss_pred cCCCccccccccccc--ceEec--ccccccHHHHHHHHh-cCCCCCCCCccccCC
Q 008218 287 ASDSTCIICREEMTT--AKKLI--CGHLFHVHCLRSWLE-RQHTCPTCRALVVPP 336 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~--~~~l~--C~H~Fh~~Cl~~wl~-~~~~CP~Cr~~i~~~ 336 (573)
..+..|+||++.+.. ...+| |||.||..|+..|.+ ....||.||+++...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 456789999999853 34455 999999999999874 356899999988654
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.70 E-value=4.1e-09 Score=92.63 Aligned_cols=45 Identities=22% Similarity=0.531 Sum_probs=41.4
Q ss_pred CCCcccccccccccceEe-cccccccHHHHHHHHhcCCCCCCCCcccc
Q 008218 288 SDSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
.+..|+||++.+.+|..+ +|||.||..||..|+. ..||+||..+.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 367899999999999999 9999999999999987 78999999874
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.64 E-value=6.2e-09 Score=83.84 Aligned_cols=43 Identities=26% Similarity=0.672 Sum_probs=39.4
Q ss_pred CCCcccccccccccceEeccccc-ccHHHHHHHHhcCCCCCCCCcccc
Q 008218 288 SDSTCIICREEMTTAKKLICGHL-FHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~-Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
.+..|.||++.+.++..+||||. ||..|+..| ..||+||.++.
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 35689999999999999999999 999999998 78999999875
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.57 E-value=1.5e-08 Score=85.57 Aligned_cols=45 Identities=33% Similarity=0.635 Sum_probs=40.1
Q ss_pred CCCcccccccccccceEec-ccccccHHHHHHHHhcC------CCCCC--CCcc
Q 008218 288 SDSTCIICREEMTTAKKLI-CGHLFHVHCLRSWLERQ------HTCPT--CRAL 332 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~-C~H~Fh~~Cl~~wl~~~------~~CP~--Cr~~ 332 (573)
.+..|+||++.|.+|+.++ |||.||..||..|+..+ .+||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4678999999999999996 99999999999999753 48999 9865
No 60
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=5.2e-08 Score=77.12 Aligned_cols=48 Identities=23% Similarity=0.615 Sum_probs=41.2
Q ss_pred hhccCCCcccccccccccceEeccccc-ccHHHHHHHHhcCCCCCCCCccccC
Q 008218 284 ELDASDSTCIICREEMTTAKKLICGHL-FHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 284 ~~~~~~~~C~IC~~~~~~~~~l~C~H~-Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
..+..+..|.||++...+...+||||. ||..|+.. ...||+||.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 10 PSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred ccCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 344567899999999999999999999 99999984 4789999998854
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.50 E-value=3.6e-08 Score=92.78 Aligned_cols=48 Identities=19% Similarity=0.117 Sum_probs=42.9
Q ss_pred CCCcccccccccccceEecccccccHHHHHHHHhcC-CCCCCCCccccC
Q 008218 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQ-HTCPTCRALVVP 335 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~-~~CP~Cr~~i~~ 335 (573)
....|+||.+.|.+|+.+||||.||..||..|+..+ .+||.|+.++..
T Consensus 105 ~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 105 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred HhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 467899999999999999999999999999999764 469999988753
No 62
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.48 E-value=4.3e-08 Score=99.68 Aligned_cols=48 Identities=25% Similarity=0.576 Sum_probs=39.0
Q ss_pred cCCCcccccccccccceE--------ecccccccHHHHHHHHhcC-----------CCCCCCCcccc
Q 008218 287 ASDSTCIICREEMTTAKK--------LICGHLFHVHCLRSWLERQ-----------HTCPTCRALVV 334 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~--------l~C~H~Fh~~Cl~~wl~~~-----------~~CP~Cr~~i~ 334 (573)
....+|+||++.+.+... .+|||.||..||.+|+++. .+||+||+++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 456789999999876222 3699999999999999752 46999999885
No 63
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.47 E-value=4e-08 Score=91.96 Aligned_cols=48 Identities=27% Similarity=0.600 Sum_probs=43.1
Q ss_pred CCCcccccccccccceEecccccccHHHHHHHHhcC-CCCCCCCccccC
Q 008218 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQ-HTCPTCRALVVP 335 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~-~~CP~Cr~~i~~ 335 (573)
.+..|+||++.+.+|..++|||.||..|+.+|+... .+||+||.++..
T Consensus 17 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 467899999999999999999999999999999764 489999998854
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=5.9e-08 Score=78.22 Aligned_cols=43 Identities=26% Similarity=0.650 Sum_probs=38.1
Q ss_pred CCcccccccccccceEeccccc-ccHHHHHHHHhcCCCCCCCCccccC
Q 008218 289 DSTCIICREEMTTAKKLICGHL-FHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~-Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
+..|.||++.+.++..+||||. ||..|+.. ...||+||.++..
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 4579999999999999999999 99999964 3789999998854
No 65
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.39 E-value=8.8e-08 Score=74.11 Aligned_cols=48 Identities=10% Similarity=0.109 Sum_probs=43.4
Q ss_pred CCcccccccccccceEe-cccccccHHHHHHHHhcCCCCCCCCccccCC
Q 008218 289 DSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~ 336 (573)
...|+||.+.|++|+.+ +|||.|.+.||.+|++.+.+||+++.++...
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 46799999999999999 8999999999999998888899999988644
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.36 E-value=9.3e-08 Score=77.98 Aligned_cols=43 Identities=30% Similarity=0.678 Sum_probs=38.6
Q ss_pred CCcccccccccccceEeccccc-ccHHHHHHHHhcCCCCCCCCccccC
Q 008218 289 DSTCIICREEMTTAKKLICGHL-FHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~-Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
+..|.||++...++..+||||. ||..|+..| ..||+||.++..
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 4589999999999999999999 999999877 489999998854
No 67
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.25 E-value=5.1e-07 Score=69.55 Aligned_cols=48 Identities=29% Similarity=0.696 Sum_probs=38.6
Q ss_pred cCCCcccccccccccceEeccc--c---cccHHHHHHHHhc--CCCCCCCCcccc
Q 008218 287 ASDSTCIICREEMTTAKKLICG--H---LFHVHCLRSWLER--QHTCPTCRALVV 334 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~--H---~Fh~~Cl~~wl~~--~~~CP~Cr~~i~ 334 (573)
+....|.||+++..++..+||. | .||..||.+|+.. +.+||+|+.++.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4567899999986666667854 4 8999999999964 568999998764
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.20 E-value=1.2e-06 Score=86.57 Aligned_cols=48 Identities=23% Similarity=0.506 Sum_probs=42.0
Q ss_pred CCCcccccccccccceEe-cccccccHHHHHHHHhcC--CCCCC--CCccccC
Q 008218 288 SDSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLERQ--HTCPT--CRALVVP 335 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l-~C~H~Fh~~Cl~~wl~~~--~~CP~--Cr~~i~~ 335 (573)
.+..|+||++.|.+|+.. .|||.||..||..|++.+ .+||. ||..+..
T Consensus 180 ~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 467899999999999986 999999999999999764 46999 9997753
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.18 E-value=3.2e-07 Score=95.24 Aligned_cols=43 Identities=30% Similarity=0.798 Sum_probs=39.7
Q ss_pred CCCcccccccccccceEeccccc-ccHHHHHHHHhcCCCCCCCCcccc
Q 008218 288 SDSTCIICREEMTTAKKLICGHL-FHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~-Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
.+..|+||++.+.++..+||||. ||..|+..| ..||+||.++.
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 46789999999999999999999 999999988 78999999874
No 70
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.05 E-value=1.8e-06 Score=72.46 Aligned_cols=45 Identities=27% Similarity=0.677 Sum_probs=37.3
Q ss_pred CCCcccccccccccceEe---cccccccHHHHHHHHhc--------CCCCCC--CCcc
Q 008218 288 SDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER--------QHTCPT--CRAL 332 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~--------~~~CP~--Cr~~ 332 (573)
....|+||++++..++.+ +|||.||..|+..+++. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 456899999999887644 79999999999999853 136999 9987
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.67 E-value=2.3e-05 Score=65.48 Aligned_cols=46 Identities=22% Similarity=0.485 Sum_probs=37.2
Q ss_pred ccccccccccc-ceEecccccccHHHHHHHHh-cCCCCCCCCccccCC
Q 008218 291 TCIICREEMTT-AKKLICGHLFHVHCLRSWLE-RQHTCPTCRALVVPP 336 (573)
Q Consensus 291 ~C~IC~~~~~~-~~~l~C~H~Fh~~Cl~~wl~-~~~~CP~Cr~~i~~~ 336 (573)
.|.+|--.+.. ++.+||+|+||.+|+..|.+ ..++||.|+.++...
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 47888776665 45679999999999999985 467899999988643
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.59 E-value=4.9e-05 Score=74.81 Aligned_cols=48 Identities=21% Similarity=0.593 Sum_probs=40.7
Q ss_pred CCcccccccccccceEec-ccccccHHHHHHHHhcCC--CCCCCCccccCC
Q 008218 289 DSTCIICREEMTTAKKLI-CGHLFHVHCLRSWLERQH--TCPTCRALVVPP 336 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~-C~H~Fh~~Cl~~wl~~~~--~CP~Cr~~i~~~ 336 (573)
-..|.||.+....+.+-+ |+|.||..|+..|++.+. .||.|+.+....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 568999999999887665 999999999999997644 899999876543
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.70 E-value=0.11 Score=42.65 Aligned_cols=47 Identities=23% Similarity=0.535 Sum_probs=38.2
Q ss_pred CCCcccccccccccceEecc-cccccHHHHHHHHhcCCCCCCCCccccCC
Q 008218 288 SDSTCIICREEMTTAKKLIC-GHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C-~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~ 336 (573)
+-..|..|+-..+ -.+.| .|..|..|+...+..+..||+|+.++...
T Consensus 27 G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred CcccChhhccccC--CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 4567999997644 34455 69999999999999999999999998643
No 74
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=92.81 E-value=0.15 Score=58.78 Aligned_cols=48 Identities=13% Similarity=-0.011 Sum_probs=43.7
Q ss_pred CCCcccccccccccceEeccc-ccccHHHHHHHHhcCCCCCCCCccccC
Q 008218 288 SDSTCIICREEMTTAKKLICG-HLFHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~-H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
....|+|-.+.|.+|+.+|.| +.+-+.+|.+|+.++.+||.=|.++..
T Consensus 890 ~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 890 DEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp GGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred HHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 367899999999999999998 589999999999999999999998864
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=90.52 E-value=0.1 Score=43.52 Aligned_cols=31 Identities=23% Similarity=0.565 Sum_probs=26.0
Q ss_pred CCcccccccc-cccceE--ecccccccHHHHHHH
Q 008218 289 DSTCIICREE-MTTAKK--LICGHLFHVHCLRSW 319 (573)
Q Consensus 289 ~~~C~IC~~~-~~~~~~--l~C~H~Fh~~Cl~~w 319 (573)
+..|.||.++ ..++.. +.|+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 4689999986 566666 899999999999983
No 76
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=88.71 E-value=0.31 Score=37.65 Aligned_cols=44 Identities=25% Similarity=0.535 Sum_probs=32.3
Q ss_pred cCCCcccccccccccceEe---cccccccHHHHHHHHhcCC----CCCCCCccc
Q 008218 287 ASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLERQH----TCPTCRALV 333 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~~~----~CP~Cr~~i 333 (573)
..+..|.||.+. ++.+ .|...||..|+++.+.... .||.|+...
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 346689999853 3344 5888999999998886532 699997643
No 77
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=86.23 E-value=0.57 Score=37.66 Aligned_cols=32 Identities=31% Similarity=0.689 Sum_probs=24.3
Q ss_pred cCCCcccccccccccceEec---ccccccHHHHHHH
Q 008218 287 ASDSTCIICREEMTTAKKLI---CGHLFHVHCLRSW 319 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~---C~H~Fh~~Cl~~w 319 (573)
..|+.|.||-. +.....+| |+-+||..|+++-
T Consensus 13 ~~D~~C~VC~~-~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV-WTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC-CCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccc-ccccceeccccccccccHhhcccc
Confidence 46889999963 23445565 7889999999996
No 78
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=74.20 E-value=2.2 Score=33.93 Aligned_cols=36 Identities=25% Similarity=0.599 Sum_probs=30.5
Q ss_pred cCCCcccccccccccceEecc----cccccHHHHHHHHhc
Q 008218 287 ASDSTCIICREEMTTAKKLIC----GHLFHVHCLRSWLER 322 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C----~H~Fh~~Cl~~wl~~ 322 (573)
.....|.+|.+.+++.-...| .|.||..|-+..+++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 446789999999999877766 799999999998865
No 79
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=70.73 E-value=0.79 Score=43.52 Aligned_cols=44 Identities=27% Similarity=0.680 Sum_probs=31.8
Q ss_pred ccCCCcccccccccccceEe---cccccccHHHHHHHHhcC----CCCCCCCcc
Q 008218 286 DASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLERQ----HTCPTCRAL 332 (573)
Q Consensus 286 ~~~~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~~----~~CP~Cr~~ 332 (573)
+..++.|.+|.+. +..+ .|...||..|+.+-+... -.||.|+..
T Consensus 4 d~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 4 DPNEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp CSSCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 3467789999854 3344 477889999998876542 359999764
No 80
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=70.22 E-value=1.1 Score=33.87 Aligned_cols=44 Identities=30% Similarity=0.764 Sum_probs=30.7
Q ss_pred ccCCCcccccccccccceEe---cccccccHHHHHHHHhc----CCCCCCCCcc
Q 008218 286 DASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCRAL 332 (573)
Q Consensus 286 ~~~~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~----~~~CP~Cr~~ 332 (573)
+..+..|.+|.+. +..+ .|...||..|+.+-+.. .-.||.|+..
T Consensus 6 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 4567789999863 3344 47778999999865543 2259999754
No 81
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=69.86 E-value=2.1 Score=32.24 Aligned_cols=42 Identities=24% Similarity=0.782 Sum_probs=30.1
Q ss_pred cCCCcccccccccccceEe---cccccccHHHHHHHHhc----CCCCCCCCc
Q 008218 287 ASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCRA 331 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~----~~~CP~Cr~ 331 (573)
..+..|.+|.+. +..+ .|...||..|+..-+.. .-.||.|+.
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 456789999873 4455 46678999999885533 235999965
No 82
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=64.86 E-value=22 Score=28.79 Aligned_cols=48 Identities=21% Similarity=0.473 Sum_probs=35.3
Q ss_pred CCCccccccccccc---ce-Ee---cccccccHHHHHHHH-hcCCCCCCCCccccC
Q 008218 288 SDSTCIICREEMTT---AK-KL---ICGHLFHVHCLRSWL-ERQHTCPTCRALVVP 335 (573)
Q Consensus 288 ~~~~C~IC~~~~~~---~~-~l---~C~H~Fh~~Cl~~wl-~~~~~CP~Cr~~i~~ 335 (573)
....|.||-|+.-. +. .. .|+--.|..|+.-=. +.++.||-|+.....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 45799999999743 22 12 477789999987644 457789999988763
No 83
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=64.63 E-value=3.1 Score=33.90 Aligned_cols=44 Identities=27% Similarity=0.753 Sum_probs=31.4
Q ss_pred ccCCCcccccccccccceEec---ccccccHHHHHHHHhc----CCCCCCCCcc
Q 008218 286 DASDSTCIICREEMTTAKKLI---CGHLFHVHCLRSWLER----QHTCPTCRAL 332 (573)
Q Consensus 286 ~~~~~~C~IC~~~~~~~~~l~---C~H~Fh~~Cl~~wl~~----~~~CP~Cr~~ 332 (573)
+..++.|.+|.+. +..|- |.-.||..|+.+=+.. .-.||.|+..
T Consensus 22 d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 4567899999864 34554 6668999999876644 2259999753
No 84
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=64.45 E-value=1.2 Score=35.00 Aligned_cols=47 Identities=19% Similarity=0.415 Sum_probs=32.3
Q ss_pred CCCcccccccccccceEe---cccccccHHHHHHHHhc----CCCCCCCCcccc
Q 008218 288 SDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCRALVV 334 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~----~~~CP~Cr~~i~ 334 (573)
....|.+|.........+ .|.-.||..|+..-... .-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 445699998775433344 47778999999765432 346999987654
No 85
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=63.98 E-value=3.1 Score=38.51 Aligned_cols=43 Identities=28% Similarity=0.689 Sum_probs=31.1
Q ss_pred CCCcccccccccccceEe---cccccccHHHHHHHHhcC----CCCCCCCccc
Q 008218 288 SDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLERQ----HTCPTCRALV 333 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~~----~~CP~Cr~~i 333 (573)
.++.|.+|.+. +..+ .|.-.||..|+.+-+... -.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 46789999854 4444 477789999998876542 3599998643
No 86
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=62.86 E-value=2.9 Score=30.05 Aligned_cols=41 Identities=34% Similarity=0.868 Sum_probs=27.6
Q ss_pred cccccccccccceEe---cccccccHHHHHHHHhc----CCCCCCCCc
Q 008218 291 TCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCRA 331 (573)
Q Consensus 291 ~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~----~~~CP~Cr~ 331 (573)
.|.+|.+.-.....+ .|...||..|+++=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588888764444444 47778999999764433 224999964
No 87
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=61.91 E-value=2.7 Score=39.08 Aligned_cols=44 Identities=20% Similarity=0.468 Sum_probs=31.3
Q ss_pred CCcccccccccccce----Ee---cccccccHHHHHHH------Hh-----cCCCCCCCCcc
Q 008218 289 DSTCIICREEMTTAK----KL---ICGHLFHVHCLRSW------LE-----RQHTCPTCRAL 332 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~----~l---~C~H~Fh~~Cl~~w------l~-----~~~~CP~Cr~~ 332 (573)
+..|+||...+.+.+ .+ .|..-||..|..-= +. ....||.|+..
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 457999999887664 34 47889999998431 11 15789999753
No 88
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=54.81 E-value=0.87 Score=34.22 Aligned_cols=45 Identities=27% Similarity=0.799 Sum_probs=31.0
Q ss_pred cCCCcccccccccccceEe---cccccccHHHHHHHHhc----CCCCCCCCcccc
Q 008218 287 ASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCRALVV 334 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~----~~~CP~Cr~~i~ 334 (573)
..+..|.+|.+. +..+ .|.-.||..|+.+=+.. .-.||.|+....
T Consensus 3 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 457789999874 3444 47778999999865533 224998866543
No 89
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=51.84 E-value=3.4 Score=38.59 Aligned_cols=41 Identities=24% Similarity=0.719 Sum_probs=28.9
Q ss_pred CCcccccccccccceEe---cccccccHHHHHHHHhc----CCCCCCCCcc
Q 008218 289 DSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCRAL 332 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~----~~~CP~Cr~~ 332 (573)
++.|.+|.+. +..+ .|...||..|+.+=+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 5689999854 3444 46678999999765533 2259999764
No 90
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=51.18 E-value=3.4 Score=34.88 Aligned_cols=44 Identities=25% Similarity=0.705 Sum_probs=30.4
Q ss_pred cCCCcccccccccccceEe---cccccccHHHHHHHHhc----CCCCCCCC
Q 008218 287 ASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCR 330 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~----~~~CP~Cr 330 (573)
..++.|.+|.+.-+....+ .|+..||..|+...... .-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 4678999998764432223 58899999999887642 22477664
No 91
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=50.32 E-value=1.8 Score=32.75 Aligned_cols=45 Identities=27% Similarity=0.670 Sum_probs=30.7
Q ss_pred cCCCcccccccccccce-Ee---cccccccHHHHHHHHh-----cCCCCCCCCc
Q 008218 287 ASDSTCIICREEMTTAK-KL---ICGHLFHVHCLRSWLE-----RQHTCPTCRA 331 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~-~l---~C~H~Fh~~Cl~~wl~-----~~~~CP~Cr~ 331 (573)
..+..|.+|...+.+.. .+ .|..-||..|+.--.. ....||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 34668999998875432 33 5778899999864322 2456999965
No 92
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=47.74 E-value=4.8 Score=32.73 Aligned_cols=47 Identities=23% Similarity=0.456 Sum_probs=30.9
Q ss_pred cCCCccccccccc--ccceEe---cccccccHHHHHHHHhc--CCCCCCCCccc
Q 008218 287 ASDSTCIICREEM--TTAKKL---ICGHLFHVHCLRSWLER--QHTCPTCRALV 333 (573)
Q Consensus 287 ~~~~~C~IC~~~~--~~~~~l---~C~H~Fh~~Cl~~wl~~--~~~CP~Cr~~i 333 (573)
..+..|.||.+.- .....+ .|.-.||..|+..-..- .-.||.|....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 4578999998754 223344 47778999999754321 22589886543
No 93
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.98 E-value=1.4 Score=32.61 Aligned_cols=41 Identities=29% Similarity=0.868 Sum_probs=27.9
Q ss_pred cCCCcccccccccccceEe---cccccccHHHHHHHHhcC----CCCCCCC
Q 008218 287 ASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLERQ----HTCPTCR 330 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~~----~~CP~Cr 330 (573)
..+..|.+|.+. +..+ .|...||..|+.+=+... -.||.|+
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 457789999874 3444 477789999998654332 2477774
No 94
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=45.56 E-value=12 Score=38.44 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=31.8
Q ss_pred CCcccccccccccceEe-cccccccHH--HHHHHHhcC--CCCCCCCccccC
Q 008218 289 DSTCIICREEMTTAKKL-ICGHLFHVH--CLRSWLERQ--HTCPTCRALVVP 335 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l-~C~H~Fh~~--Cl~~wl~~~--~~CP~Cr~~i~~ 335 (573)
...|++-...+..|.+- .|.|.-|.+ -+.....+. -.||+|.+.+..
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 57899988889888764 799984433 233322233 369999987743
No 95
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=44.50 E-value=14 Score=32.74 Aligned_cols=43 Identities=28% Similarity=0.616 Sum_probs=31.0
Q ss_pred ccCCCcccccccccccceEe---cccccccHHHHHHHHh-----------cCCCCCCCCc
Q 008218 286 DASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLE-----------RQHTCPTCRA 331 (573)
Q Consensus 286 ~~~~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~-----------~~~~CP~Cr~ 331 (573)
+..++.|.+|.+- +..+ .|-..||..||.+=+. ..-.||.|+.
T Consensus 60 Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4567899999864 4444 5677899999997552 1236999974
No 96
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=43.23 E-value=14 Score=37.86 Aligned_cols=47 Identities=21% Similarity=0.445 Sum_probs=32.0
Q ss_pred CCcccccccccccceEe-ccccc--ccHHHHHHHHhcC--CCCCCCCccccC
Q 008218 289 DSTCIICREEMTTAKKL-ICGHL--FHVHCLRSWLERQ--HTCPTCRALVVP 335 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l-~C~H~--Fh~~Cl~~wl~~~--~~CP~Cr~~i~~ 335 (573)
...|++-...+..|.+- .|.|. |-..-+....++. -.||+|.+.+..
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 46799999888888764 79998 4433333333333 369999988754
No 97
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=42.40 E-value=7.2 Score=32.26 Aligned_cols=41 Identities=20% Similarity=0.511 Sum_probs=28.5
Q ss_pred CcccccccccccceEe---cccccccHHHHHHHHhc---CCCCCCCCc
Q 008218 290 STCIICREEMTTAKKL---ICGHLFHVHCLRSWLER---QHTCPTCRA 331 (573)
Q Consensus 290 ~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~---~~~CP~Cr~ 331 (573)
..| ||......+..+ .|.-.||..|+..=... .-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 888776666655 47788999998753322 346999963
No 98
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=40.72 E-value=13 Score=28.74 Aligned_cols=41 Identities=24% Similarity=0.701 Sum_probs=27.0
Q ss_pred CCCcccccccccccceEec-----cc-ccccHHHHHHHHhc----CCCCCCCCcc
Q 008218 288 SDSTCIICREEMTTAKKLI-----CG-HLFHVHCLRSWLER----QHTCPTCRAL 332 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~-----C~-H~Fh~~Cl~~wl~~----~~~CP~Cr~~ 332 (573)
....| ||..... +..+- |. ..||..|+. +.. .-.||.|+..
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 34567 8987543 44553 55 589999997 433 3359999754
No 99
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.55 E-value=5.2 Score=31.66 Aligned_cols=43 Identities=26% Similarity=0.754 Sum_probs=28.8
Q ss_pred CCcccccccccccceEe---cccccccHHHHHHHHhc-----CCCCCCCCc
Q 008218 289 DSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER-----QHTCPTCRA 331 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~-----~~~CP~Cr~ 331 (573)
+..|.+|...-.....+ .|...||..|+.+=+.. .=.||.|..
T Consensus 26 ~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 34788888654445555 47788999999864432 225888864
No 100
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.22 E-value=3.3 Score=34.00 Aligned_cols=46 Identities=26% Similarity=0.560 Sum_probs=31.6
Q ss_pred cCCCcccccccccccceEe---cccccccHHHHHHHHhc----CCCCCCCCcc
Q 008218 287 ASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCRAL 332 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~----~~~CP~Cr~~ 332 (573)
..+..|.||.+.-.....+ .|...||..|+.+=+.. .-.||.|+..
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3466899998765444444 47888999999854433 2249999754
No 101
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=39.84 E-value=6.4 Score=33.33 Aligned_cols=41 Identities=34% Similarity=0.737 Sum_probs=27.7
Q ss_pred ccccccccccc-ceEe---cccccccHHHHHHHHhc----CCCCCCCCc
Q 008218 291 TCIICREEMTT-AKKL---ICGHLFHVHCLRSWLER----QHTCPTCRA 331 (573)
Q Consensus 291 ~C~IC~~~~~~-~~~l---~C~H~Fh~~Cl~~wl~~----~~~CP~Cr~ 331 (573)
.|.+|.+.-.+ ...+ .|...||..|+++-+.. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 67788864322 3333 48889999999876544 225999974
No 102
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=39.48 E-value=3.9 Score=31.24 Aligned_cols=42 Identities=26% Similarity=0.744 Sum_probs=29.4
Q ss_pred cCCCcccccccccccceEe---cccccccHHHHHHHHhc----CCCCCCCCc
Q 008218 287 ASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCRA 331 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~----~~~CP~Cr~ 331 (573)
..+..|.+|.+. +..+ .|.-.||..|+.+=+.. .-.||.|..
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 457789999864 3444 47778999999865433 225999964
No 103
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=38.64 E-value=8.3 Score=30.13 Aligned_cols=45 Identities=27% Similarity=0.603 Sum_probs=30.1
Q ss_pred cCCCcccccccccccceEe---cccccccHHHHHHHH---------hcCCCCCCCCcc
Q 008218 287 ASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWL---------ERQHTCPTCRAL 332 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl---------~~~~~CP~Cr~~ 332 (573)
.....| ||.........+ .|..-||..|+.--. .....||.|+..
T Consensus 14 ~~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 14 PNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 345567 898876544444 478889999985321 246689999754
No 104
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.15 E-value=20 Score=28.53 Aligned_cols=40 Identities=15% Similarity=0.407 Sum_probs=31.8
Q ss_pred CCCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCccccC
Q 008218 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
....|+-|-+.+.......-+..||..| ..|-.|+..+..
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVALGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEETTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCCccCCCEecceEEEECCccccccC--------CccCCCCCCCCC
Confidence 4568999999887555667888999888 479999988853
No 105
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=35.48 E-value=7.2 Score=30.87 Aligned_cols=41 Identities=34% Similarity=0.799 Sum_probs=27.1
Q ss_pred cccccccccccceEe---cccccccHHHHHHHHhc----C-CCCCCCCc
Q 008218 291 TCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----Q-HTCPTCRA 331 (573)
Q Consensus 291 ~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~----~-~~CP~Cr~ 331 (573)
.|.+|...-.....| .|...||..|+.+-|.. . =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466666654444555 47788999999876543 1 35998875
No 106
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=33.69 E-value=34 Score=23.48 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=16.2
Q ss_pred HHhHHHHHHHHHHHHHHHhhh
Q 008218 492 QRKFIENQIEVLQNQLQLLQK 512 (573)
Q Consensus 492 ~~~~~~s~~~~l~~~l~~l~~ 512 (573)
...+-+..++.+|+||++|+.
T Consensus 20 e~edeEedi~~MqsRLaALRS 40 (40)
T 2xze_Q 20 DEEEEEEALEAMQSRLATLRS 40 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhHHHHHHHHHHHHHhcC
Confidence 344556788999999999973
No 107
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=33.34 E-value=29 Score=30.18 Aligned_cols=43 Identities=28% Similarity=0.621 Sum_probs=29.9
Q ss_pred ccCCCcccccccccccceEe---cccccccHHHHHHHH------h-----cCCCCCCCCc
Q 008218 286 DASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWL------E-----RQHTCPTCRA 331 (573)
Q Consensus 286 ~~~~~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl------~-----~~~~CP~Cr~ 331 (573)
+..++.|.+|.+- +..+ .|-..||..||.+=+ + ..=.|+.|+.
T Consensus 54 Dg~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 4567789999864 3333 577899999999742 1 1236999964
No 108
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=33.16 E-value=11 Score=31.55 Aligned_cols=26 Identities=23% Similarity=0.621 Sum_probs=16.7
Q ss_pred eEecccccccHHHHHHHHhcCCCCCCCCccc
Q 008218 303 KKLICGHLFHVHCLRSWLERQHTCPTCRALV 333 (573)
Q Consensus 303 ~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i 333 (573)
+...||+.|. .-+.....||.|+..-
T Consensus 69 ~C~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 69 QCRKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp BBTTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred ChhhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 3456999981 2223456799998754
No 109
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=32.63 E-value=28 Score=33.13 Aligned_cols=32 Identities=22% Similarity=0.639 Sum_probs=24.2
Q ss_pred CCCcccccccccccceE----ecccccccHHHHHHH
Q 008218 288 SDSTCIICREEMTTAKK----LICGHLFHVHCLRSW 319 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~----l~C~H~Fh~~Cl~~w 319 (573)
.+..|.+|...|..-.+ -.||++||..|-...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 35689999998875432 269999999996643
No 110
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=32.21 E-value=42 Score=28.15 Aligned_cols=43 Identities=21% Similarity=0.496 Sum_probs=27.5
Q ss_pred CCCcccccccccc-----cc-eEe---cccccccHHHHHHH------H-hcCCCCCCCC
Q 008218 288 SDSTCIICREEMT-----TA-KKL---ICGHLFHVHCLRSW------L-ERQHTCPTCR 330 (573)
Q Consensus 288 ~~~~C~IC~~~~~-----~~-~~l---~C~H~Fh~~Cl~~w------l-~~~~~CP~Cr 330 (573)
....|.+|...-. .+ ..+ .|+..||..|+..+ + ...-.||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 4568999987632 12 223 58999999999531 2 2234577775
No 111
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=31.70 E-value=18 Score=28.44 Aligned_cols=45 Identities=27% Similarity=0.623 Sum_probs=29.1
Q ss_pred cCCCcccccccccc-cceEe---cccccccHHHHHHHHh-----cCCCCCCCCcc
Q 008218 287 ASDSTCIICREEMT-TAKKL---ICGHLFHVHCLRSWLE-----RQHTCPTCRAL 332 (573)
Q Consensus 287 ~~~~~C~IC~~~~~-~~~~l---~C~H~Fh~~Cl~~wl~-----~~~~CP~Cr~~ 332 (573)
.....| ||..... ....+ .|..-||..|+.---. ....||.|+..
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 344566 8988764 23333 4778899999853221 34579999764
No 112
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=31.05 E-value=3.7 Score=35.51 Aligned_cols=46 Identities=17% Similarity=0.461 Sum_probs=29.9
Q ss_pred CCCcccccccccccceE----ecccccccHHHHHHHHhcCCCCCCCCccc
Q 008218 288 SDSTCIICREEMTTAKK----LICGHLFHVHCLRSWLERQHTCPTCRALV 333 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~----l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i 333 (573)
....|..|...|....+ -.||.+||..|..........|-.|...+
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 34689999998875432 36999999999766655556677775543
No 113
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=30.89 E-value=43 Score=28.06 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=25.8
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHhhhcC
Q 008218 487 SQLEAQRKFIENQIEVLQNQLQLLQKSK 514 (573)
Q Consensus 487 sq~~a~~~~~~s~~~~l~~~l~~l~~~~ 514 (573)
-|++++.+.++.+++.++.++..|+++.
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~~~P 37 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLRSPP 37 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5999999999999999999999999865
No 114
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.43 E-value=27 Score=26.97 Aligned_cols=39 Identities=15% Similarity=0.323 Sum_probs=31.0
Q ss_pred CCCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCcccc
Q 008218 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
....|.-|-+.+.......-+..||..|. .|-.|+..+.
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVGVFVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCSSCEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccCcEEEECcceeCcCcC--------eeCCCCCCCC
Confidence 45689999998876655677889999884 7999988774
No 115
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=30.06 E-value=37 Score=26.84 Aligned_cols=40 Identities=18% Similarity=0.331 Sum_probs=31.4
Q ss_pred CCCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCccccC
Q 008218 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
....|.-|.+.+.......-+..||..| ..|-.|+..+..
T Consensus 24 ~~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVKARDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCSCCEESSSCEECTTT--------CCCSSSCCCTTT
T ss_pred cCCCcccCCCEecccEEEECCceECccC--------CEecCCCCCCCC
Confidence 4568999999888755556788899888 479999888753
No 116
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.01 E-value=36 Score=25.32 Aligned_cols=38 Identities=26% Similarity=0.660 Sum_probs=29.4
Q ss_pred CCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCcccc
Q 008218 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
...|+-|.+.+.......-+..||..| .+|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITTGGVTYREQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCSSEEESSSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCCcccCCeeccceEEECccccCCCC--------CccCCCCCcCC
Confidence 457999998887655556788899888 46889988774
No 117
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=29.91 E-value=9.7 Score=36.50 Aligned_cols=42 Identities=33% Similarity=0.787 Sum_probs=24.4
Q ss_pred CcccccccccccceEe---cccccccHHHHHHHHhc-----CCCCCCCCc
Q 008218 290 STCIICREEMTTAKKL---ICGHLFHVHCLRSWLER-----QHTCPTCRA 331 (573)
Q Consensus 290 ~~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~-----~~~CP~Cr~ 331 (573)
..|.+|...-.....+ .|...||..|+.+=+.. .=.||.|+.
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 3577887643333444 47788999999865533 125999964
No 118
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=29.48 E-value=29 Score=29.18 Aligned_cols=43 Identities=21% Similarity=0.604 Sum_probs=28.8
Q ss_pred cCCCcccccccccccceEec-----ccccccHHHHHHHHhcC----CCCCCCCcccc
Q 008218 287 ASDSTCIICREEMTTAKKLI-----CGHLFHVHCLRSWLERQ----HTCPTCRALVV 334 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~-----C~H~Fh~~Cl~~wl~~~----~~CP~Cr~~i~ 334 (573)
..++.|.+|.+ .+..+- |-..||..|+. +... -.||.|+..+-
T Consensus 13 ~~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 13 MHEDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp SSCSSCTTTCC---CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCcCCC---CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 45778999984 344443 55789999997 5432 24887765554
No 119
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.16 E-value=35 Score=25.49 Aligned_cols=39 Identities=21% Similarity=0.499 Sum_probs=29.3
Q ss_pred CCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCccccC
Q 008218 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
...|.-|-+.+.......-+..||..|. +|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFIIGRVIKAMNNSWHPECF--------RCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCCSCCEEETTEEECTTTS--------BCSSSCCBCSS
T ss_pred CCcCccCCCEecceEEEECcccccccCC--------EeCCCCCcCCC
Confidence 4579999988875555567778888884 68889887754
No 120
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=28.54 E-value=9.3 Score=30.93 Aligned_cols=47 Identities=19% Similarity=0.583 Sum_probs=32.7
Q ss_pred CCCccccccccccc--ceEe---cccccccHHHHHHHHhc--------CCCCCCCCcccc
Q 008218 288 SDSTCIICREEMTT--AKKL---ICGHLFHVHCLRSWLER--------QHTCPTCRALVV 334 (573)
Q Consensus 288 ~~~~C~IC~~~~~~--~~~l---~C~H~Fh~~Cl~~wl~~--------~~~CP~Cr~~i~ 334 (573)
.+..|.+|...-.. ...+ .|...||..|+.+=+.. .-.||.|+....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 46789999976432 3344 57889999999876531 236999976553
No 121
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=28.50 E-value=13 Score=37.38 Aligned_cols=46 Identities=17% Similarity=0.292 Sum_probs=32.4
Q ss_pred cCCCcccccccccccceEe----cc--cccccHHHHHHHHhcCCCCCCCCcc
Q 008218 287 ASDSTCIICREEMTTAKKL----IC--GHLFHVHCLRSWLERQHTCPTCRAL 332 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l----~C--~H~Fh~~Cl~~wl~~~~~CP~Cr~~ 332 (573)
.....|++|-..-...... .= .|..|..|-..|-.....||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4567999998765443222 12 2567778888998888899999654
No 122
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=28.26 E-value=20 Score=28.59 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=24.3
Q ss_pred CCCcccccccccccceE----ecccccccHHHHHHH
Q 008218 288 SDSTCIICREEMTTAKK----LICGHLFHVHCLRSW 319 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~----l~C~H~Fh~~Cl~~w 319 (573)
....|.+|...|..-.+ -.||++||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 45689999999875432 269999999997553
No 123
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=28.26 E-value=18 Score=31.20 Aligned_cols=30 Identities=20% Similarity=0.664 Sum_probs=22.6
Q ss_pred CCcccccccccccceE----ecccccccHHHHHH
Q 008218 289 DSTCIICREEMTTAKK----LICGHLFHVHCLRS 318 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~----l~C~H~Fh~~Cl~~ 318 (573)
...|.+|...|....+ -.||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 4579999999875432 26999999999543
No 124
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=27.84 E-value=1.2e+02 Score=24.23 Aligned_cols=42 Identities=29% Similarity=0.299 Sum_probs=31.7
Q ss_pred cchhHHHHHhHHHHHHHHHHHHHHHhhhcCCCCChHhHHHHH
Q 008218 485 PVSQLEAQRKFIENQIEVLQNQLQLLQKSKPEGNVETILQCH 526 (573)
Q Consensus 485 ~~sq~~a~~~~~~s~~~~l~~~l~~l~~~~~~~~~~~~~~~~ 526 (573)
..+++++..+.++.+.+.|+.++..++..-.+..++.|-+.+
T Consensus 2 ~~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~h 43 (85)
T 3viq_B 2 EKSQLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKH 43 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 346788888899999999999999888766666565555444
No 125
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.82 E-value=33 Score=26.16 Aligned_cols=40 Identities=25% Similarity=0.536 Sum_probs=30.3
Q ss_pred CCCcccccccccccce-EecccccccHHHHHHHHhcCCCCCCCCccccC
Q 008218 288 SDSTCIICREEMTTAK-KLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~-~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
....|+.|-+.+.... ...-+..+|..| ..|..|+.++..
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSSLGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEETTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCCcCCCCEeECCeEEEECCeEeeCCC--------CCCCCCCCccCC
Confidence 3568999999887444 446778899888 479999888853
No 126
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=27.80 E-value=11 Score=28.29 Aligned_cols=34 Identities=21% Similarity=0.523 Sum_probs=23.5
Q ss_pred CCcccccccccccce---Ee--c---ccccccHHHHHHHHhc
Q 008218 289 DSTCIICREEMTTAK---KL--I---CGHLFHVHCLRSWLER 322 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~---~l--~---C~H~Fh~~Cl~~wl~~ 322 (573)
...|+-|...++... .+ + |++.||+.|..+|-..
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 346777776665432 11 2 8999999999998754
No 127
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=27.71 E-value=30 Score=25.53 Aligned_cols=38 Identities=21% Similarity=0.461 Sum_probs=28.9
Q ss_pred CCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCcccc
Q 008218 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
...|+.|.+.+.......-+..+|..| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (66)
T 1nyp_A 5 VPICGACRRPIEGRVVNAMGKQWHVEH--------FVCAKCEKPFL 42 (66)
T ss_dssp CCEETTTTEECCSCEECCTTSBEETTT--------CBCTTTCCBCS
T ss_pred CCCCcccCCEecceEEEECccccccCc--------CEECCCCCCCC
Confidence 457999999888444446778899888 46889988875
No 128
>2hep_A UPF0291 protein YNZC; SR384, structure, autostructure, northeast structural genomics consortium, PSI-1, protein structure initiative, NESG; NMR {Bacillus subtilis} SCOP: a.2.21.1
Probab=27.44 E-value=16 Score=29.43 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=11.0
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHhhhcCCCCChHhHHHHHHHhhccceehhh
Q 008218 487 SQLEAQRKFIENQIEVLQNQLQLLQKSKPEGNVETILQCHQVAKERQLHLHL 538 (573)
Q Consensus 487 sq~~a~~~~~~s~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (573)
.|..-...+++.+...++++|..+.-.-++++.-+-+..+++.++.++|++-
T Consensus 29 EQ~~LR~eYl~~fR~~~r~~L~~ikivD~~G~dvtp~Klk~~q~~~~l~~~~ 80 (85)
T 2hep_A 29 EQQKLRQEYLKGFRSSMKNTLKSVKIIDPEGNDVTPEKLKREQRNNKLHLEH 80 (85)
T ss_dssp HHHHHHHHHHHHCC--------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcceeEECCCCCcCCHHHHHHHHHHhCCcccc
Confidence 4666677889999999999999998877777544444444444577888764
No 129
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=27.11 E-value=22 Score=28.18 Aligned_cols=31 Identities=26% Similarity=0.744 Sum_probs=23.5
Q ss_pred CCCcccccccccccceE----ecccccccHHHHHH
Q 008218 288 SDSTCIICREEMTTAKK----LICGHLFHVHCLRS 318 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~----l~C~H~Fh~~Cl~~ 318 (573)
....|.+|...|....+ -.||.+||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 34579999999875432 26999999999654
No 130
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=26.83 E-value=8.3 Score=35.09 Aligned_cols=44 Identities=20% Similarity=0.585 Sum_probs=29.3
Q ss_pred CCCcccccccccccc-eEe---cccccccHHHHHHHH-----hcCCCCCCCCcc
Q 008218 288 SDSTCIICREEMTTA-KKL---ICGHLFHVHCLRSWL-----ERQHTCPTCRAL 332 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~-~~l---~C~H~Fh~~Cl~~wl-----~~~~~CP~Cr~~ 332 (573)
....| +|.....+. ..+ .|...||..|+.--. .....||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 45678 998876433 334 477789999985321 124579999753
No 131
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=26.71 E-value=18 Score=27.94 Aligned_cols=41 Identities=34% Similarity=0.805 Sum_probs=27.1
Q ss_pred cccccccccccceEe---cccccccHHHHHHHHhc-----CCCCCCCCc
Q 008218 291 TCIICREEMTTAKKL---ICGHLFHVHCLRSWLER-----QHTCPTCRA 331 (573)
Q Consensus 291 ~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~-----~~~CP~Cr~ 331 (573)
.|.+|...-.....| .|...||..|+.+=+.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 566777654445555 47789999999854432 225888864
No 132
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.49 E-value=39 Score=25.10 Aligned_cols=38 Identities=24% Similarity=0.614 Sum_probs=28.6
Q ss_pred CCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCcccc
Q 008218 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
...|+-|-+.+.......-+..||..| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITSGGITYQDQPWHADC--------FVCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCTTCEEETTEEECTTT--------TBCTTTCCBCT
T ss_pred cCCCcccCCEeCcceEEECccccccCc--------CEECCCCCCCC
Confidence 457999988877555556777888887 46888988775
No 133
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.41 E-value=40 Score=26.04 Aligned_cols=40 Identities=13% Similarity=0.375 Sum_probs=30.7
Q ss_pred CCCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCccccC
Q 008218 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
....|+-|-+.+.......-+..+|..| .+|-.|+.++..
T Consensus 14 ~~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 2cor_A 14 GKYICQKCHAIIDEQPLIFKNDPYHPDH--------FNCANCGKELTA 53 (79)
T ss_dssp CCCBCTTTCCBCCSCCCCCSSSCCCTTT--------SBCSSSCCBCCT
T ss_pred CCCCCccCCCEecceEEEECcceeCCCC--------CEeCCCCCccCC
Confidence 4568999999888544456788899888 479999888753
No 134
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=26.29 E-value=14 Score=38.52 Aligned_cols=46 Identities=17% Similarity=0.416 Sum_probs=0.0
Q ss_pred CCCcccccccccccce----EecccccccHHHHHHHHhc-------CCCCCCCCccc
Q 008218 288 SDSTCIICREEMTTAK----KLICGHLFHVHCLRSWLER-------QHTCPTCRALV 333 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~----~l~C~H~Fh~~Cl~~wl~~-------~~~CP~Cr~~i 333 (573)
....|.+|...|.... .-.||++||..|-..+..- ...|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 3568999999887443 2369999999998765411 23577775544
No 135
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=26.12 E-value=35 Score=27.78 Aligned_cols=41 Identities=24% Similarity=0.691 Sum_probs=26.5
Q ss_pred CCcccccccccccceEec-----cc-ccccHHHHHHHHhc----CCCCCCCCccc
Q 008218 289 DSTCIICREEMTTAKKLI-----CG-HLFHVHCLRSWLER----QHTCPTCRALV 333 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~-----C~-H~Fh~~Cl~~wl~~----~~~CP~Cr~~i 333 (573)
...| ||.+... +..+- |. ..||..|+. +.. .-.||.|+..-
T Consensus 36 ~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 36 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 4456 9988643 34443 55 579999997 332 33699997643
No 136
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=25.91 E-value=1.3e+02 Score=21.87 Aligned_cols=36 Identities=8% Similarity=0.053 Sum_probs=25.1
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHhhhcCCCCChHhHHHHHHHhh
Q 008218 487 SQLEAQRKFIENQIEVLQNQLQLLQKSKPEGNVETILQCHQVAK 530 (573)
Q Consensus 487 sq~~a~~~~~~s~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~ 530 (573)
.|+.++-..+-.+.+.|+++.++++. ++.+|+.+|.
T Consensus 7 ~~Lss~V~~L~~kVdqLssdV~al~~--------~v~~ak~eA~ 42 (52)
T 1jcd_A 7 DQASSDAQTANAKADQASNDANAARS--------DAQAAKDDAA 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 46667777777777777777777764 6667776643
No 137
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=25.87 E-value=26 Score=27.07 Aligned_cols=29 Identities=21% Similarity=0.608 Sum_probs=22.3
Q ss_pred CCcccccccccccceE----ecccccccHHHHH
Q 008218 289 DSTCIICREEMTTAKK----LICGHLFHVHCLR 317 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~----l~C~H~Fh~~Cl~ 317 (573)
+..|.+|...|..-.+ -.||.+||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 3589999998875432 2699999999964
No 138
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=25.54 E-value=22 Score=28.71 Aligned_cols=33 Identities=24% Similarity=0.563 Sum_probs=24.6
Q ss_pred CCCcccccccccccceE----ecccccccHHHHHHHH
Q 008218 288 SDSTCIICREEMTTAKK----LICGHLFHVHCLRSWL 320 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~----l~C~H~Fh~~Cl~~wl 320 (573)
....|.+|...|..-.+ -.||++||..|...+.
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 34579999998875432 2699999999976543
No 139
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.88 E-value=22 Score=28.28 Aligned_cols=29 Identities=28% Similarity=0.584 Sum_probs=21.9
Q ss_pred CCCcccccccccccceE----ecccccccHHHH
Q 008218 288 SDSTCIICREEMTTAKK----LICGHLFHVHCL 316 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~----l~C~H~Fh~~Cl 316 (573)
....|.+|...|..-.+ -.||.+||..|.
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTS
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhc
Confidence 34689999999865432 269999999884
No 140
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.80 E-value=47 Score=24.77 Aligned_cols=39 Identities=26% Similarity=0.604 Sum_probs=28.7
Q ss_pred CCcccccccccccc-e-EecccccccHHHHHHHHhcCCCCCCCCccccC
Q 008218 289 DSTCIICREEMTTA-K-KLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 289 ~~~C~IC~~~~~~~-~-~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
...|.-|-+.+... . ...-+..||..| .+|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEEEECccccCccc--------CeECCCCCcCCC
Confidence 45799999988853 3 335788899888 468889887743
No 141
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.56 E-value=47 Score=25.27 Aligned_cols=38 Identities=21% Similarity=0.573 Sum_probs=29.2
Q ss_pred CCccccccccccc----ceEecccccccHHHHHHHHhcCCCCCCCCcccc
Q 008218 289 DSTCIICREEMTT----AKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 289 ~~~C~IC~~~~~~----~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
...|+.|-+.+.. .....-+..+|..| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCccc--------CChhhCCCcCC
Confidence 4579999998875 34446778899988 47899988875
No 142
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=24.44 E-value=28 Score=26.59 Aligned_cols=32 Identities=31% Similarity=0.671 Sum_probs=23.7
Q ss_pred cCCCcccccccccccceEecc-cccccHHHHHHH
Q 008218 287 ASDSTCIICREEMTTAKKLIC-GHLFHVHCLRSW 319 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C-~H~Fh~~Cl~~w 319 (573)
+...-|.||.++ -.-+.+-| +-+||..|.++-
T Consensus 6 ee~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED-ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC-CCEEETTTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC-CeEEecCCCCceehHHHHHHH
Confidence 345679999999 33445678 778999997764
No 143
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=23.66 E-value=27 Score=26.16 Aligned_cols=46 Identities=26% Similarity=0.673 Sum_probs=31.0
Q ss_pred cCCCcccccccccc--cceEe---cccccccHHHHHHHHh-------cCCCCCCCCcc
Q 008218 287 ASDSTCIICREEMT--TAKKL---ICGHLFHVHCLRSWLE-------RQHTCPTCRAL 332 (573)
Q Consensus 287 ~~~~~C~IC~~~~~--~~~~l---~C~H~Fh~~Cl~~wl~-------~~~~CP~Cr~~ 332 (573)
..+..|.+|..... ....+ .|.-.||..|+.+=+. ..-.||.|+..
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 35678999997643 24444 4777899999986432 22358888653
No 144
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.44 E-value=46 Score=25.64 Aligned_cols=39 Identities=23% Similarity=0.616 Sum_probs=29.6
Q ss_pred CCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCccccC
Q 008218 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (573)
...|+-|-+.+.......-+..||..| ..|-.|+.++..
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~~ 53 (81)
T 1v6g_A 15 GTRCFSCDQFIEGEVVSALGKTYHPDC--------FVCAVCRLPFPP 53 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTEEECTTT--------SSCSSSCCCCCS
T ss_pred CCcCccccCEeccceEEECCceeCccC--------CccccCCCCCCC
Confidence 458999999887544556788899888 478899887753
No 145
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=23.24 E-value=34 Score=25.90 Aligned_cols=31 Identities=26% Similarity=0.596 Sum_probs=21.3
Q ss_pred cCCCcccccccccccceE-e----cccccccHHHHH
Q 008218 287 ASDSTCIICREEMTTAKK-L----ICGHLFHVHCLR 317 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~-l----~C~H~Fh~~Cl~ 317 (573)
.....|.+|...+.+... + .|.--||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 345689999998765543 2 567789999974
No 146
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.84 E-value=60 Score=24.25 Aligned_cols=38 Identities=21% Similarity=0.490 Sum_probs=28.8
Q ss_pred CCccccccccccc----ceEecccccccHHHHHHHHhcCCCCCCCCcccc
Q 008218 289 DSTCIICREEMTT----AKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 289 ~~~C~IC~~~~~~----~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
...|.-|-+.+.. .....-+..+|..| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTT--------CBCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCccc--------CEeccCCCcCC
Confidence 4679999998875 33445788899888 47999988875
No 147
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=22.75 E-value=48 Score=28.96 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=20.4
Q ss_pred cCCCccccccccccc--ce---EecccccccHHHH
Q 008218 287 ASDSTCIICREEMTT--AK---KLICGHLFHVHCL 316 (573)
Q Consensus 287 ~~~~~C~IC~~~~~~--~~---~l~C~H~Fh~~Cl 316 (573)
.++..|.+|...+.- +. ..-|+|.+|..|-
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 357789999999841 11 2257887777774
No 148
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=21.73 E-value=29 Score=27.97 Aligned_cols=31 Identities=35% Similarity=0.580 Sum_probs=23.8
Q ss_pred CCCcccccccccccceE----ecccccccHHHHHH
Q 008218 288 SDSTCIICREEMTTAKK----LICGHLFHVHCLRS 318 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~----l~C~H~Fh~~Cl~~ 318 (573)
....|.+|...|..-.+ -.||++||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 34589999999875532 26999999999754
No 149
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=21.27 E-value=25 Score=33.23 Aligned_cols=31 Identities=29% Similarity=0.652 Sum_probs=23.2
Q ss_pred CCCcccccccccccceE----ecccccccHHHHHH
Q 008218 288 SDSTCIICREEMTTAKK----LICGHLFHVHCLRS 318 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~----l~C~H~Fh~~Cl~~ 318 (573)
.+..|.+|...|.--.+ -.||++||..|-..
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 35799999998875432 26999999998644
No 150
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=20.73 E-value=36 Score=28.10 Aligned_cols=12 Identities=33% Similarity=1.002 Sum_probs=10.6
Q ss_pred ccHHHHHHHHhc
Q 008218 311 FHVHCLRSWLER 322 (573)
Q Consensus 311 Fh~~Cl~~wl~~ 322 (573)
||..||.+|...
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 899999999954
No 151
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=20.72 E-value=9.1 Score=25.38 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=9.8
Q ss_pred CCcccccccccccce
Q 008218 289 DSTCIICREEMTTAK 303 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~ 303 (573)
...|++|+.++..+.
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 356777777766554
No 152
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=20.63 E-value=37 Score=28.03 Aligned_cols=12 Identities=42% Similarity=1.013 Sum_probs=10.5
Q ss_pred ccHHHHHHHHhc
Q 008218 311 FHVHCLRSWLER 322 (573)
Q Consensus 311 Fh~~Cl~~wl~~ 322 (573)
||..||.+|+..
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 899999999863
No 153
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.41 E-value=53 Score=25.22 Aligned_cols=38 Identities=21% Similarity=0.496 Sum_probs=28.8
Q ss_pred CCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCcccc
Q 008218 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
...|+.|-+.+.......-+..||..| ..|-.|+.++.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 1x6a_A 15 GEFCHGCSLLMTGPFMVAGEFKYHPEC--------FACMSCKVIIE 52 (81)
T ss_dssp SCBCTTTCCBCCSCCBCCTTCCBCTTS--------CBCTTTCCBCC
T ss_pred CCcCccCCCCcCceEEEECCceecccc--------CCccCCCCccC
Confidence 457999998888544456788889877 46889988874
No 154
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=20.39 E-value=16 Score=30.64 Aligned_cols=42 Identities=26% Similarity=0.687 Sum_probs=27.3
Q ss_pred cccccccccccceEe---cccccccHHHHHHHHhc----CCCCCCCCcc
Q 008218 291 TCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCRAL 332 (573)
Q Consensus 291 ~C~IC~~~~~~~~~l---~C~H~Fh~~Cl~~wl~~----~~~CP~Cr~~ 332 (573)
.|.+|.+.-.+...+ .|...||..|+++=+.. .-.||.|+..
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 466777664444455 47778999999865433 2258888543
No 155
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=20.32 E-value=45 Score=27.72 Aligned_cols=58 Identities=21% Similarity=0.280 Sum_probs=43.5
Q ss_pred cchhHHHHHhHHHHHHHHHHHHHHHhhhcCCCCChHhHHHHHHHhhccceehhhHHHHhh
Q 008218 485 PVSQLEAQRKFIENQIEVLQNQLQLLQKSKPEGNVETILQCHQVAKERQLHLHLFLHQTL 544 (573)
Q Consensus 485 ~~sq~~a~~~~~~s~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (573)
+|.|++..++.+.-|++-||-.+..++..-++...+....+... |++++.++=+...+
T Consensus 17 snAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~--e~~Kr~~~~L~~~~ 74 (103)
T 4h22_A 17 SNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEF--EREKHAHSILQFQF 74 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 57899999999999999999999999988887777665555542 45555555444433
No 156
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.26 E-value=59 Score=24.98 Aligned_cols=39 Identities=21% Similarity=0.483 Sum_probs=29.9
Q ss_pred CCCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCcccc
Q 008218 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
....|+-|-+.+.......-+..||..| .+|..|+.++.
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 2dlo_A 14 TLEKCATCSQPILDRILRAMGKAYHPGC--------FTCVVCHRGLD 52 (81)
T ss_dssp SCCBCTTTCCBCCSCCEEETTEEECTTT--------CBCSSSCCBCT
T ss_pred CCCccccCCCeecceeEEECCccccHHh--------cCcccCCCccC
Confidence 3568999998887554556788899888 47999988875
No 157
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=20.26 E-value=28 Score=27.22 Aligned_cols=45 Identities=22% Similarity=0.469 Sum_probs=29.2
Q ss_pred CCCcccccccccccceEe-----cccccccHHHHHHHHh---------cCCCCCCCCccc
Q 008218 288 SDSTCIICREEMTTAKKL-----ICGHLFHVHCLRSWLE---------RQHTCPTCRALV 333 (573)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l-----~C~H~Fh~~Cl~~wl~---------~~~~CP~Cr~~i 333 (573)
....| ||......+..+ .|..-||..|+.---. ....||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 45567 898875555444 4777899999853211 245699997643
No 158
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.20 E-value=50 Score=25.06 Aligned_cols=38 Identities=21% Similarity=0.448 Sum_probs=28.6
Q ss_pred CCcccccccccccceEecccccccHHHHHHHHhcCCCCCCCCcccc
Q 008218 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (573)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (573)
...|+-|-..+.......-+..||.+| .+|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITGRVLEAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSSCCBCCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred cCCcccCCCEecCeeEEeCCCCCCCCc--------CEeCCCCCCCC
Confidence 457899988877644556788899888 47888888775
No 159
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=20.07 E-value=52 Score=24.96 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=10.2
Q ss_pred ccccccccccce-EecccccccHHH
Q 008218 292 CIICREEMTTAK-KLICGHLFHVHC 315 (573)
Q Consensus 292 C~IC~~~~~~~~-~l~C~H~Fh~~C 315 (573)
|+-|-+.+.... ...-+..+|..|
T Consensus 3 C~~C~~~I~~~~~v~a~~~~~H~~C 27 (76)
T 1iml_A 3 CPKCDKEVYFAERVTSLGKDWHRPC 27 (76)
T ss_dssp CTTTSSBCCGGGEEEETTEEEETTT
T ss_pred CCCCCCEEECceEEEECCccccCCC
Confidence 455555444222 223344555444
Done!